Query 035860
Match_columns 440
No_of_seqs 227 out of 1706
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 7.6E-35 1.7E-39 266.9 25.6 225 154-408 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 1.2E-15 2.6E-20 131.8 17.0 155 267-432 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 2.2E-15 4.9E-20 124.7 14.7 118 267-392 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.4 7E-11 1.5E-15 112.6 19.2 319 41-410 4-350 (373)
5 PHA02713 hypothetical protein; 99.0 6.8E-08 1.5E-12 99.6 22.1 213 154-412 299-539 (557)
6 PHA03098 kelch-like protein; P 98.9 2.8E-07 6E-12 95.3 23.6 198 172-412 311-517 (534)
7 KOG4441 Proteins containing BT 98.8 3.7E-07 7.9E-12 94.0 18.1 216 151-412 325-552 (571)
8 PHA02713 hypothetical protein; 98.8 7.9E-07 1.7E-11 91.7 20.4 132 173-330 273-408 (557)
9 PF12937 F-box-like: F-box-lik 98.7 3.3E-09 7.1E-14 70.8 1.5 41 42-82 2-42 (47)
10 PHA02790 Kelch-like protein; P 98.7 1.8E-06 3.8E-11 87.8 21.6 184 172-412 287-476 (480)
11 TIGR03548 mutarot_permut cycli 98.6 1.6E-05 3.5E-10 76.6 24.6 157 173-363 40-205 (323)
12 PLN02193 nitrile-specifier pro 98.6 7.2E-06 1.6E-10 83.1 22.7 205 172-412 193-416 (470)
13 PF00646 F-box: F-box domain; 98.6 1.5E-08 3.2E-13 68.0 1.9 43 42-84 4-46 (48)
14 smart00256 FBOX A Receptor for 98.6 1.2E-08 2.6E-13 65.9 0.7 39 44-82 1-39 (41)
15 TIGR03547 muta_rot_YjhT mutatr 98.6 3.8E-05 8.3E-10 74.8 24.4 181 154-365 13-240 (346)
16 PLN02153 epithiospecifier prot 98.5 9.5E-06 2.1E-10 78.8 19.3 189 154-362 28-235 (341)
17 PRK14131 N-acetylneuraminic ac 98.4 6.2E-05 1.4E-09 74.1 22.8 181 153-364 33-260 (376)
18 KOG4441 Proteins containing BT 98.4 1.6E-05 3.4E-10 82.1 18.3 196 171-412 300-505 (571)
19 PHA03098 kelch-like protein; P 98.3 3.7E-05 8.1E-10 79.5 19.0 177 153-363 337-522 (534)
20 PHA02790 Kelch-like protein; P 98.3 3.7E-05 8.1E-10 78.1 18.4 143 153-330 313-456 (480)
21 PLN02193 nitrile-specifier pro 98.3 0.00037 8.1E-09 70.7 23.9 188 154-363 224-421 (470)
22 PLN02153 epithiospecifier prot 98.2 0.00028 6.1E-09 68.5 21.2 188 154-362 81-294 (341)
23 TIGR03548 mutarot_permut cycli 98.1 0.00053 1.1E-08 66.1 19.4 138 172-330 88-233 (323)
24 PRK14131 N-acetylneuraminic ac 98.0 0.002 4.2E-08 63.5 22.4 92 236-330 189-289 (376)
25 TIGR03547 muta_rot_YjhT mutatr 97.9 0.0033 7.2E-08 61.2 21.7 91 236-329 168-266 (346)
26 KOG2120 SCF ubiquitin ligase, 97.6 2E-05 4.4E-10 71.8 1.3 46 35-80 92-137 (419)
27 KOG0281 Beta-TrCP (transducin 97.6 0.0021 4.5E-08 59.7 13.8 45 42-86 76-124 (499)
28 KOG1230 Protein containing rep 97.3 0.014 2.9E-07 55.9 16.2 221 171-417 97-352 (521)
29 KOG4693 Uncharacterized conser 96.6 0.073 1.6E-06 48.1 13.6 119 235-363 156-287 (392)
30 KOG4693 Uncharacterized conser 96.4 0.21 4.5E-06 45.3 15.1 217 170-412 42-282 (392)
31 KOG0379 Kelch repeat-containin 96.4 0.25 5.5E-06 50.3 17.7 153 237-412 89-255 (482)
32 KOG0379 Kelch repeat-containin 96.3 0.34 7.4E-06 49.4 18.5 184 152-363 117-312 (482)
33 KOG2997 F-box protein FBX9 [Ge 95.7 0.0036 7.9E-08 57.7 0.6 45 42-86 108-157 (366)
34 PF02191 OLF: Olfactomedin-lik 95.6 1.1 2.4E-05 41.2 16.6 73 267-349 74-155 (250)
35 smart00284 OLF Olfactomedin-li 95.4 0.69 1.5E-05 42.4 14.1 74 267-350 79-161 (255)
36 PF07762 DUF1618: Protein of u 94.2 0.42 9.2E-06 39.2 9.1 82 287-368 7-102 (131)
37 PF13964 Kelch_6: Kelch motif 93.0 0.22 4.8E-06 33.1 4.5 38 267-304 7-47 (50)
38 KOG0274 Cdc4 and related F-box 92.8 4.9 0.00011 41.5 15.7 42 42-83 109-150 (537)
39 PF07893 DUF1668: Protein of u 92.1 4.9 0.00011 39.0 14.1 138 172-330 86-253 (342)
40 PF01344 Kelch_1: Kelch motif; 91.6 0.73 1.6E-05 29.9 5.6 38 267-304 7-47 (47)
41 COG4257 Vgb Streptogramin lyas 90.6 9.8 0.00021 35.2 13.3 226 152-414 66-314 (353)
42 PF13964 Kelch_6: Kelch motif 90.0 0.97 2.1E-05 29.9 5.1 38 155-192 8-48 (50)
43 KOG1230 Protein containing rep 89.5 4.2 9E-05 39.5 10.5 118 237-361 99-224 (521)
44 smart00612 Kelch Kelch domain. 85.9 1.5 3.2E-05 28.0 4.0 22 235-257 14-35 (47)
45 KOG4341 F-box protein containi 84.7 0.3 6.5E-06 47.4 0.1 37 42-78 73-109 (483)
46 PF07646 Kelch_2: Kelch motif; 84.4 2.5 5.5E-05 27.7 4.5 37 267-303 7-47 (49)
47 PF05096 Glu_cyclase_2: Glutam 84.0 36 0.00077 31.5 16.6 145 231-411 63-208 (264)
48 KOG4152 Host cell transcriptio 82.7 28 0.0006 35.0 12.4 90 172-279 57-154 (830)
49 KOG3545 Olfactomedin and relat 82.1 31 0.00067 31.4 11.7 91 246-349 55-154 (249)
50 PF07893 DUF1668: Protein of u 81.2 44 0.00095 32.4 13.6 121 287-412 87-213 (342)
51 PF10282 Lactonase: Lactonase, 80.2 59 0.0013 31.4 14.5 121 271-412 154-283 (345)
52 PF13418 Kelch_4: Galactose ox 78.9 3.8 8.2E-05 26.7 3.8 35 267-301 7-44 (49)
53 PF01344 Kelch_1: Kelch motif; 78.6 2.8 6E-05 27.0 3.1 33 223-256 13-47 (47)
54 PF02897 Peptidase_S9_N: Proly 76.0 86 0.0019 31.0 17.8 163 219-412 237-410 (414)
55 PRK11028 6-phosphogluconolacto 75.9 74 0.0016 30.3 14.3 140 235-407 11-157 (330)
56 PF06433 Me-amine-dh_H: Methyl 71.9 72 0.0016 30.7 11.7 123 267-410 189-324 (342)
57 PF07646 Kelch_2: Kelch motif; 71.3 7.4 0.00016 25.4 3.7 44 314-362 5-48 (49)
58 PLN02772 guanylate kinase 69.0 30 0.00065 34.1 8.7 73 266-349 29-107 (398)
59 PF13418 Kelch_4: Galactose ox 68.8 4.9 0.00011 26.2 2.4 33 223-256 14-48 (49)
60 PRK11138 outer membrane biogen 66.0 1.3E+02 0.0029 29.5 13.1 113 267-412 65-184 (394)
61 smart00612 Kelch Kelch domain. 66.0 21 0.00046 22.3 5.1 20 286-305 15-35 (47)
62 PF13360 PQQ_2: PQQ-like domai 63.9 1.1E+02 0.0023 27.2 19.0 192 157-412 35-236 (238)
63 TIGR03300 assembly_YfgL outer 62.7 1.3E+02 0.0029 29.2 12.3 108 267-412 61-169 (377)
64 PF10282 Lactonase: Lactonase, 60.6 1.6E+02 0.0036 28.3 17.4 168 212-412 148-330 (345)
65 PF13570 PQQ_3: PQQ-like domai 60.6 13 0.00029 23.0 3.1 24 267-295 17-40 (40)
66 smart00564 PQQ beta-propeller 59.5 31 0.00066 19.9 4.5 27 267-298 2-28 (33)
67 PF07250 Glyoxal_oxid_N: Glyox 58.6 1.5E+02 0.0032 27.2 12.8 152 235-410 45-201 (243)
68 PF13415 Kelch_3: Galactose ox 57.1 22 0.00049 23.1 4.0 20 286-305 19-39 (49)
69 PF12458 DUF3686: ATPase invol 56.5 1.5E+02 0.0032 29.4 10.7 146 155-348 235-384 (448)
70 TIGR01640 F_box_assoc_1 F-box 55.1 1.6E+02 0.0034 26.4 13.9 119 269-411 3-131 (230)
71 COG3055 Uncharacterized protei 54.5 47 0.001 31.9 6.9 119 236-366 113-269 (381)
72 COG4257 Vgb Streptogramin lyas 54.4 48 0.001 30.8 6.7 131 275-411 117-267 (353)
73 PF13360 PQQ_2: PQQ-like domai 53.6 1.6E+02 0.0035 26.1 13.7 112 267-412 32-146 (238)
74 cd01207 Ena-Vasp Enabled-VASP- 53.6 41 0.00088 26.6 5.4 43 172-228 9-51 (111)
75 cd01206 Homer Homer type EVH1 52.6 31 0.00067 27.1 4.4 40 172-228 11-51 (111)
76 COG2706 3-carboxymuconate cycl 52.3 2.2E+02 0.0049 27.4 13.2 122 273-410 53-179 (346)
77 PRK11028 6-phosphogluconolacto 52.0 2.2E+02 0.0047 27.0 12.0 96 286-407 12-111 (330)
78 TIGR03074 PQQ_membr_DH membran 47.5 4E+02 0.0087 29.1 13.5 29 266-299 189-219 (764)
79 TIGR03075 PQQ_enz_alc_DH PQQ-d 47.4 3.4E+02 0.0074 28.1 13.1 119 267-412 65-195 (527)
80 COG2706 3-carboxymuconate cycl 47.4 2.7E+02 0.0058 26.8 15.8 110 286-412 167-282 (346)
81 KOG1310 WD40 repeat protein [G 44.3 1.2E+02 0.0026 31.0 8.2 113 156-295 59-179 (758)
82 PRK04792 tolB translocation pr 41.3 3.9E+02 0.0084 26.9 19.4 140 171-350 241-382 (448)
83 PF03022 MRJP: Major royal jel 39.3 1.8E+02 0.0039 27.3 8.5 25 388-412 78-103 (287)
84 TIGR03032 conserved hypothetic 38.5 1.5E+02 0.0032 28.4 7.4 53 267-330 208-261 (335)
85 PF08450 SGL: SMP-30/Gluconola 38.0 3E+02 0.0065 24.7 18.4 194 156-409 9-215 (246)
86 COG3055 Uncharacterized protei 36.5 1.7E+02 0.0036 28.4 7.5 79 246-330 69-156 (381)
87 cd00260 Sialidase Sialidases o 35.9 4E+02 0.0086 25.5 12.1 87 267-363 151-242 (351)
88 KOG2055 WD40 repeat protein [G 35.5 4.7E+02 0.01 26.3 12.7 36 269-308 266-302 (514)
89 KOG2502 Tub family proteins [G 35.0 25 0.00054 33.6 1.9 37 41-77 45-89 (355)
90 TIGR02276 beta_rpt_yvtn 40-res 34.9 65 0.0014 19.6 3.4 25 386-410 2-26 (42)
91 TIGR02658 TTQ_MADH_Hv methylam 33.8 4.6E+02 0.0099 25.6 22.1 120 269-410 203-334 (352)
92 PRK11138 outer membrane biogen 32.5 4.9E+02 0.011 25.5 15.9 50 237-298 131-182 (394)
93 PF13013 F-box-like_2: F-box-l 31.4 17 0.00036 28.7 0.1 29 41-69 22-50 (109)
94 PRK00178 tolB translocation pr 31.3 5.3E+02 0.011 25.5 19.4 139 171-349 222-362 (430)
95 PF05096 Glu_cyclase_2: Glutam 31.0 4.4E+02 0.0095 24.5 13.9 109 267-409 49-160 (264)
96 PRK05137 tolB translocation pr 29.3 5.8E+02 0.013 25.4 20.3 186 171-411 225-417 (435)
97 COG1520 FOG: WD40-like repeat 28.6 5.5E+02 0.012 24.9 12.0 111 267-412 64-177 (370)
98 PF01011 PQQ: PQQ enzyme repea 27.3 1.2E+02 0.0026 18.3 3.6 23 389-412 2-24 (38)
99 TIGR03866 PQQ_ABC_repeats PQQ- 27.1 4.7E+02 0.01 23.6 21.2 186 171-410 52-241 (300)
100 TIGR02658 TTQ_MADH_Hv methylam 26.2 6.2E+02 0.013 24.7 11.8 110 287-410 28-140 (352)
101 PF00568 WH1: WH1 domain; Int 25.4 1.6E+02 0.0034 23.1 4.8 39 172-228 16-55 (111)
102 KOG3926 F-box proteins [Amino 22.9 54 0.0012 30.2 1.8 37 41-77 202-239 (332)
103 PF13859 BNR_3: BNR repeat-lik 22.2 4.4E+02 0.0096 25.1 7.9 102 248-363 101-217 (310)
104 TIGR03300 assembly_YfgL outer 21.5 7.4E+02 0.016 23.9 19.7 50 237-298 116-167 (377)
105 KOG1408 WD40 repeat protein [F 20.8 1.1E+03 0.023 25.5 12.1 21 171-191 279-300 (1080)
106 cd00837 EVH1 EVH1 (Enabled, Va 20.7 3.4E+02 0.0073 21.0 5.7 40 172-228 9-48 (104)
107 PF13088 BNR_2: BNR repeat-lik 20.2 6.6E+02 0.014 22.8 14.7 116 236-366 133-256 (275)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=7.6e-35 Score=266.85 Aligned_cols=225 Identities=26% Similarity=0.385 Sum_probs=161.7
Q ss_pred EeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecc-cc
Q 035860 154 YFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPV-IE 232 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~-~~ 232 (440)
++|||||||+... ..++||||+||+++.||+++...... ... .++||||+.+++||||++... ..
T Consensus 1 ~~sCnGLlc~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~--------~~~-~~~~G~d~~~~~YKVv~~~~~~~~ 66 (230)
T TIGR01640 1 VVPCDGLICFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNK--------ESD-TYFLGYDPIEKQYKVLCFSDRSGN 66 (230)
T ss_pred CcccceEEEEecC-----CcEEEECCCCCCEEecCCCCCccccc--------ccc-eEEEeecccCCcEEEEEEEeecCC
Confidence 4799999999865 68999999999999999765421111 001 359999999999999999622 22
Q ss_pred CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEE-EeeCCCCCCCC
Q 035860 233 LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFK-KIDLPIDCNME 310 (440)
Q Consensus 233 ~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~-~i~lP~~~~~~ 310 (440)
.....++||+++ +++||.+...+...... ..+|++||++||++...... ...|++||+++|+|+ .+++|......
T Consensus 67 ~~~~~~~Vys~~-~~~Wr~~~~~~~~~~~~--~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~ 143 (230)
T TIGR01640 67 RNQSEHQVYTLG-SNSWRTIECSPPHHPLK--SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDS 143 (230)
T ss_pred CCCccEEEEEeC-CCCccccccCCCCcccc--CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccc
Confidence 356789999999 99999998544322212 23999999999999765422 138999999999999 58999754322
Q ss_pred CCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEE
Q 035860 311 PRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWM 390 (440)
Q Consensus 311 ~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i 390 (440)
.....|++++|+||++.... ....++||+|+++++ ..|+|+++|+.......... ..+.+.+ .+|+ |
T Consensus 144 ~~~~~L~~~~G~L~~v~~~~-------~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~---~~~~~~~-~~g~-I 210 (230)
T TIGR01640 144 VDYLSLINYKGKLAVLKQKK-------DTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDD---NFLSGFT-DKGE-I 210 (230)
T ss_pred ccceEEEEECCEEEEEEecC-------CCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhh---eeEeEEe-eCCE-E
Confidence 23568999999999999764 124599999999864 46999999997544433221 2344443 4565 5
Q ss_pred EEeecCC-Cc-eEEEECCCC
Q 035860 391 VLDTFRH-DN-KFVLDLEND 408 (440)
Q Consensus 391 ~l~~~~~-~~-~~~yd~~~~ 408 (440)
++..... .. +++||++++
T Consensus 211 ~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 211 VLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEeCCCCceEEEEEeccCC
Confidence 5533321 23 899999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.69 E-value=1.2e-15 Score=131.75 Aligned_cols=155 Identities=23% Similarity=0.296 Sum_probs=99.3
Q ss_pred cEEEcCeEEEEEecCCCCc-eEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEE
Q 035860 267 GVSAYGDMHWISFDQNNIH-TCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIE 343 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~-~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~ 343 (440)
||++||++||++....... ..|++||+++|+| ..+++|...........|.+. +|+||++.... ....++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~-------~~~~~~ 73 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD-------ETSKIE 73 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc-------CCccEE
Confidence 6999999999998876542 3799999999999 888999866522356778655 57999997643 235699
Q ss_pred EEEeeccC-CCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEE-eecCC----CceEEEECCCCcEEEEEecc
Q 035860 344 IWVLKDHY-ERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVL-DTFRH----DNKFVLDLENDDCHLRICPV 417 (440)
Q Consensus 344 IW~l~~~g-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l-~~~~~----~~~~~yd~~~~~~~~~~~~~ 417 (440)
||+|+++| +..+|+|.++|+..........- ......+..+++.++. ..... +.+.+|+ +++.......+.
T Consensus 74 IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~--~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~ 150 (164)
T PF07734_consen 74 IWVMKKYGYGKESWTKLFTIDLPPLPSLFFHF--RNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIED 150 (164)
T ss_pred EEEEeeeccCcceEEEEEEEecCCCCCccccc--ccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccccc
Confidence 99999764 37899999999976665432210 0122223223333332 21111 3456776 555543211111
Q ss_pred CCcccccceeecccc
Q 035860 418 PKNFDHHDTIRFTGS 432 (440)
Q Consensus 418 ~~~~~~~~~~~y~~S 432 (440)
.. ..+..+..|+||
T Consensus 151 ~~-~~~~~~~~YvpS 164 (164)
T PF07734_consen 151 KS-SCWPSICNYVPS 164 (164)
T ss_pred CC-CCCCCEEEECCC
Confidence 12 345567789987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.66 E-value=2.2e-15 Score=124.65 Aligned_cols=118 Identities=30% Similarity=0.508 Sum_probs=82.8
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEE
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWV 346 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~ 346 (440)
|+++||++||++.........|++||+++|+|+.|++|...........|++++|+||++..... .....++||+
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~-----~~~~~~~iWv 75 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQ-----GEPDSIDIWV 75 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCC-----CCcceEEEEE
Confidence 68999999999998322247999999999999999999222222277899999999999997651 1135799999
Q ss_pred eeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEE
Q 035860 347 LKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVL 392 (440)
Q Consensus 347 l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l 392 (440)
|+|++ +++|++.+.+-.......... ..+.+. ++..+|+.|+.
T Consensus 76 LeD~~-k~~Wsk~~~~lp~~~~~~~~~-~~~~~~-g~~~~Geiv~~ 118 (129)
T PF08268_consen 76 LEDYE-KQEWSKKHIVLPPSWQHFVHD-CDFSFV-GVTDTGEIVFA 118 (129)
T ss_pred eeccc-cceEEEEEEECChHHhcccCC-cEEEEE-EEcCCCEEEEE
Confidence 99985 589999866433322222111 222333 44567886666
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.35 E-value=7e-11 Score=112.56 Aligned_cols=319 Identities=11% Similarity=0.081 Sum_probs=153.6
Q ss_pred CCCCcHHHHHHHHhcCC-cccceeeeccccchhhhhCChhHHHHHHhhhccCCCccccccccCCCCCcceeecCCcccCC
Q 035860 41 SMEFPSNIIYNILLRQP-VKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQS 119 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP-~~sL~R~r~VCK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (440)
+++||+|||..|..||| ..+++|||+||++||+.+.... +. ...+++++ + ++.. ......+. + +++.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~-~--~~~~-~~~~~~~~-~---~~~~ 71 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPL-I--LFNP-INPSETLT-D---DRSY 71 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccc-c--ccCc-ccCCCCcc-c---cccc
Confidence 47999999999999998 6799999999999999877410 00 00011111 1 1111 00000000 0 0000
Q ss_pred cccccccccCCCCCCCCCcCCCCCCCCCCCCc-cEEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCC
Q 035860 120 EHALFPYIYDDNNALKPGEYPTNLDFSNERDT-PIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQH 198 (440)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~ 198 (440)
+ ......+... . ..++ ..-++..|.|.-...+ .....+.+.||+++.-..+|+.......
T Consensus 72 ~------------~~~~~~ls~~-~---~~r~~~~~~~~~~WLik~~~~-~~~~~~~Ll~PLsr~~~~~~~~~lnll~-- 132 (373)
T PLN03215 72 I------------SRPGAFLSRA-A---FFRVTLSSSPSKGWLIKSDMD-VNSGRFHLLNPLSRLPLRHSSESVDLLE-- 132 (373)
T ss_pred c------------ccccceeeee-E---EEEeecCCCCCCCcEEEEecc-ccCCccEecCccccCccCCCCccceeee--
Confidence 0 0000000000 0 0000 0113568888765431 1357899999999997777753221100
Q ss_pred CcccccccccceEEE-eeeCC---CCCE--EEEEEeccccC-CcceEEEEEeCC-----CCCcceeccCCcccCCCCCcc
Q 035860 199 DYYDAYRGLRGHFGM-GYDSA---TGTY--KIVQSYPVIEL-SDYKIAVYTLGK-----DDSWRIISSSLALRPDVSYEF 266 (440)
Q Consensus 199 ~~~~~~~~~~~~~~~-g~d~~---~~~y--kVv~~~~~~~~-~~~~~~Vyss~~-----t~~W~~~~~~p~~~~~~~~~~ 266 (440)
|....... .+.+ +.+.. ...| |++.....++. ....+-|+.-+. .++|..++.... . ...
T Consensus 133 --f~v~ei~~-~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~--~---~~D 204 (373)
T PLN03215 133 --FTVSEIRE-AYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY--H---FSD 204 (373)
T ss_pred --eEEEEccc-eEEEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCCCc--e---eeE
Confidence 00000000 0011 11100 0012 11111111111 112233332221 456777653222 1 223
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCC--CCC-CC-CCCCEEEEeCCeEEEEEcCCC-CCC-------
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPI--DCN-ME-PRSPSLINLRGNLALVTFPTD-DYD------- 334 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~--~~~-~~-~~~~~L~~~~G~L~lv~~~~~-~~~------- 334 (440)
-|+.+|.+|-+...+ .+.++|.+-+ ...+..+. ... .. .....|+|+.|.|.||..... ...
T Consensus 205 Ii~~kGkfYAvD~~G-----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~ 278 (373)
T PLN03215 205 IIVHKGQTYALDSIG-----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGF 278 (373)
T ss_pred EEEECCEEEEEcCCC-----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccc
Confidence 789999999985544 6777774321 22222111 011 00 144679999999999987421 000
Q ss_pred CCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE--EEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 335 GDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI--VVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 335 ~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
....+..++|+.++.. ...|+++.+++-..+. +.....+...... ...++.||+... ...-+||++.++-
T Consensus 279 ~~~~t~~f~VfklD~~--~~~WveV~sLgd~aLF--lG~~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~ 350 (373)
T PLN03215 279 EYSRTVGFKVYKFDDE--LAKWMEVKTLGDNAFV--MATDTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNG 350 (373)
T ss_pred cccceeEEEEEEEcCC--CCcEEEecccCCeEEE--EECCccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCc
Confidence 0012357899999853 5789999888643221 1111111111000 125789999654 3567999999983
No 5
>PHA02713 hypothetical protein; Provisional
Probab=98.99 E-value=6.8e-08 Score=99.59 Aligned_cols=213 Identities=11% Similarity=0.044 Sum_probs=131.1
Q ss_pred EeeeccEEEeeecCC---CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c
Q 035860 154 YFVAYGFICFGESSC---HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P 229 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~ 229 (440)
++..+|-|.+.++.. .....+..+||.+++|..+|+++..... ..+..++. ||.+++ .
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-------------~~~~~~~g-----~IYviGG~ 360 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-------------FSLAVIDD-----TIYAIGGQ 360 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-------------eeEEEECC-----EEEEECCc
Confidence 455566665544311 1235688999999999999988754211 11222222 566664 2
Q ss_pred cccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCC-------------------CceEEEE
Q 035860 230 VIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNN-------------------IHTCIFS 290 (440)
Q Consensus 230 ~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~Il~ 290 (440)
.+......+++|+.. ++.|..++.+|...... ..+.++|.+|-+...... ....+.+
T Consensus 361 ~~~~~~~sve~Ydp~-~~~W~~~~~mp~~r~~~---~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ 436 (557)
T PHA02713 361 NGTNVERTIECYTMG-DDKWKMLPDMPIALSSY---GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR 436 (557)
T ss_pred CCCCCCceEEEEECC-CCeEEECCCCCcccccc---cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEE
Confidence 222234569999999 99999998887643322 267899999998764311 0146899
Q ss_pred EEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEE-EEEEeeccCCC-cccceeEEeecCCC
Q 035860 291 FDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWI-EIWVLKDHYER-NEWSKAYKISTDQD 367 (440)
Q Consensus 291 fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l-~IW~l~~~g~~-~~W~~~~~i~~~~~ 367 (440)
||+.+++|..+ ++|... ....+++++|+|++++.... ..... .+...+- .. ..|+.+..|+....
T Consensus 437 YDP~td~W~~v~~m~~~r----~~~~~~~~~~~IYv~GG~~~------~~~~~~~ve~Ydp--~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 437 YDTVNNIWETLPNFWTGT----IRPGVVSHKDDIYVVCDIKD------EKNVKTCIFRYNT--NTYNGWELITTTESRLS 504 (557)
T ss_pred ECCCCCeEeecCCCCccc----ccCcEEEECCEEEEEeCCCC------CCccceeEEEecC--CCCCCeeEccccCcccc
Confidence 99999999987 444432 44568899999999986530 11111 2333332 23 47999887764321
Q ss_pred CCccccccceeeEEEEEEcCcEEEEeecCC--CceEEEECCCCcEEE
Q 035860 368 GDRIEEEDFFQYVCSIVVAGRWMVLDTFRH--DNKFVLDLENDDCHL 412 (440)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~--~~~~~yd~~~~~~~~ 412 (440)
.+++..-|+.||+.-... ..+-.||+.+++|..
T Consensus 505 ------------~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 505 ------------ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ------------cceeEEECCEEEEEeeecceeehhhcCcccccccc
Confidence 112222344576632111 246799999999973
No 6
>PHA03098 kelch-like protein; Provisional
Probab=98.92 E-value=2.8e-07 Score=95.29 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=121.4
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCcc
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
..++.+||.|++|..+|+++..... ......+. +|..++ ..+......+++|+.. ++.|+
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~-------------~~~~~~~~-----~lyv~GG~~~~~~~~~v~~yd~~-~~~W~ 371 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKN-------------PGVTVFNN-----RIYVIGGIYNSISLNTVESWKPG-ESKWR 371 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccccc-------------ceEEEECC-----EEEEEeCCCCCEecceEEEEcCC-CCcee
Confidence 4789999999999999987644211 10112221 455554 2222334568999999 99999
Q ss_pred eeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEE
Q 035860 251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVT 327 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~ 327 (440)
..+.+|...... .++.++|.+|-+....... ...+..||+.+++|..+ ++|... .....+..+|+|++++
T Consensus 372 ~~~~lp~~r~~~---~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 372 EEPPLIFPRYNP---CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIG 444 (534)
T ss_pred eCCCcCcCCccc---eEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEEC
Confidence 988776533222 2678899999987643221 25789999999999987 445432 3345677899999998
Q ss_pred cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEE
Q 035860 328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFV 402 (440)
Q Consensus 328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~ 402 (440)
..... ......-.+|..+-. +..|+++..++... .....+.. +|. |++.-.. .+.+..
T Consensus 445 G~~~~---~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r---------~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~ 507 (534)
T PHA03098 445 GISYI---DNIKVYNIVESYNPV--TNKWTELSSLNFPR---------INASLCIF--NNK-IYVVGGDKYEYYINEIEV 507 (534)
T ss_pred CccCC---CCCcccceEEEecCC--CCceeeCCCCCccc---------ccceEEEE--CCE-EEEEcCCcCCcccceeEE
Confidence 65310 000011236776653 56899875444221 11122322 444 5542111 246789
Q ss_pred EECCCCcEEE
Q 035860 403 LDLENDDCHL 412 (440)
Q Consensus 403 yd~~~~~~~~ 412 (440)
||+++++|..
T Consensus 508 yd~~~~~W~~ 517 (534)
T PHA03098 508 YDDKTNTWTL 517 (534)
T ss_pred EeCCCCEEEe
Confidence 9999999875
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.77 E-value=3.7e-07 Score=94.01 Aligned_cols=216 Identities=13% Similarity=0.052 Sum_probs=140.5
Q ss_pred ccEEeeeccEEEeeecCC---CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEE
Q 035860 151 TPIYFVAYGFICFGESSC---HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQS 227 (440)
Q Consensus 151 ~~i~~s~~GLlcl~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~ 227 (440)
..-++..+|.|-+.++.. .....+..+||.|.+|..+|++...+... +++. -..+|.++
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------------~v~~----l~g~iYav 386 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------------GVAV----LDGKLYAV 386 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------------eeEE----ECCEEEEE
Confidence 345777888876665422 23467899999999999999987652111 2221 12356666
Q ss_pred e-ccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eC
Q 035860 228 Y-PVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DL 303 (440)
Q Consensus 228 ~-~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~l 303 (440)
+ .++......+|.|+.. ++.|..++.++.... ... ++.++|.+|-+...+... -..+-+||+.+++|+.+ ++
T Consensus 387 GG~dg~~~l~svE~YDp~-~~~W~~va~m~~~r~-~~g--v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M 462 (571)
T KOG4441|consen 387 GGFDGEKSLNSVECYDPV-TNKWTPVAPMLTRRS-GHG--VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM 462 (571)
T ss_pred eccccccccccEEEecCC-CCcccccCCCCccee-eeE--EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc
Confidence 4 3445566679999999 999999998876222 222 778999999998755433 26899999999999987 55
Q ss_pred CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE
Q 035860 304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI 383 (440)
Q Consensus 304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~ 383 (440)
+... ....+++++|+|++++..+. ....-.|=..+- ....|+.+..|...... . ++
T Consensus 463 ~~~R----~~~g~a~~~~~iYvvGG~~~------~~~~~~VE~ydp--~~~~W~~v~~m~~~rs~----------~--g~ 518 (571)
T KOG4441|consen 463 NTRR----SGFGVAVLNGKIYVVGGFDG------TSALSSVERYDP--ETNQWTMVAPMTSPRSA----------V--GV 518 (571)
T ss_pred cccc----ccceEEEECCEEEEECCccC------CCccceEEEEcC--CCCceeEcccCcccccc----------c--cE
Confidence 5433 45569999999999998751 111112222222 34689998655543211 1 11
Q ss_pred EEcCcEEEEe-----ecCCCceEEEECCCCcEEE
Q 035860 384 VVAGRWMVLD-----TFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 384 ~~~g~~i~l~-----~~~~~~~~~yd~~~~~~~~ 412 (440)
...++.||+. ...-+.+-.||+++++|..
T Consensus 519 ~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred EEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 1234445542 1122456899999999975
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.76 E-value=7.9e-07 Score=91.75 Aligned_cols=132 Identities=12% Similarity=0.023 Sum_probs=90.4
Q ss_pred eEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec-c-ccCCcceEEEEEeCCCCCcc
Q 035860 173 HVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP-V-IELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 173 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-~-~~~~~~~~~Vyss~~t~~W~ 250 (440)
.+..+||.|++|..+++++..... ......+. +|+.++- . +......++.|+.. ++.|.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-------------~~~a~l~~-----~IYviGG~~~~~~~~~~v~~Yd~~-~n~W~ 333 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-------------YASAIVDN-----EIIIAGGYNFNNPSLNKVYKINIE-NKIHV 333 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-------------eEEEEECC-----EEEEEcCCCCCCCccceEEEEECC-CCeEe
Confidence 567899999999999887654211 10111221 5666641 1 11224568999999 99999
Q ss_pred eeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEc
Q 035860 251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTF 328 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~ 328 (440)
.++.+|...... ..+.++|.+|-+....... ...+-.||+.+.+|..+ ++|... .....++++|+|++++.
T Consensus 334 ~~~~m~~~R~~~---~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG 406 (557)
T PHA02713 334 ELPPMIKNRCRF---SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGG 406 (557)
T ss_pred eCCCCcchhhce---eEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeC
Confidence 988887533222 2788999999998754222 24689999999999987 555533 34567789999999986
Q ss_pred CC
Q 035860 329 PT 330 (440)
Q Consensus 329 ~~ 330 (440)
..
T Consensus 407 ~~ 408 (557)
T PHA02713 407 RT 408 (557)
T ss_pred CC
Confidence 54
No 9
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.75 E-value=3.3e-09 Score=70.78 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHH
Q 035860 42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAH 82 (440)
Q Consensus 42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~ 82 (440)
..||+|++.+||..||+++++++..|||+|+.++.++.+.+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 57999999999999999999999999999999999875443
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.73 E-value=1.8e-06 Score=87.77 Aligned_cols=184 Identities=14% Similarity=0.055 Sum_probs=115.6
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcce
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRI 251 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~ 251 (440)
..+..+||.+++|..+|+++..... ..+...+. +|..++-. .....++.|+.. ++.|..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~-------------~~~v~~~~-----~iYviGG~--~~~~sve~ydp~-~n~W~~ 345 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLY-------------ASGVPANN-----KLYVVGGL--PNPTSVERWFHG-DAAWVN 345 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhc-------------ceEEEECC-----EEEEECCc--CCCCceEEEECC-CCeEEE
Confidence 4577899999999999988654211 10112221 56666411 122458999999 999999
Q ss_pred eccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEee-CCCCCCCCCCCCEEEEeCCeEEEEEcCC
Q 035860 252 ISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKID-LPIDCNMEPRSPSLINLRGNLALVTFPT 330 (440)
Q Consensus 252 ~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~~~L~~~~G~L~lv~~~~ 330 (440)
++.+|...... .++.++|.+|-+....... ..+-.||+.+++|..++ +|... .....++.+|+|++++..
T Consensus 346 ~~~l~~~r~~~---~~~~~~g~IYviGG~~~~~-~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~~~~~~IYv~GG~- 416 (480)
T PHA02790 346 MPSLLKPRCNP---AVASINNVIYVIGGHSETD-TTTEYLLPNHDQWQFGPSTYYPH----YKSCALVFGRRLFLVGRN- 416 (480)
T ss_pred CCCCCCCCccc---EEEEECCEEEEecCcCCCC-ccEEEEeCCCCEEEeCCCCCCcc----ccceEEEECCEEEEECCc-
Confidence 98887533222 2788999999997754221 46788999999999874 33322 345677899999999832
Q ss_pred CCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEEEEC
Q 035860 331 DDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFVLDL 405 (440)
Q Consensus 331 ~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~yd~ 405 (440)
.++.-. ....|+.+..|+..... ...+ .-++.||+.-.. .+.+-.||+
T Consensus 417 -----------~e~ydp----~~~~W~~~~~m~~~r~~---------~~~~---v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 417 -----------AEFYCE----SSNTWTLIDDPIYPRDN---------PELI---IVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred -----------eEEecC----CCCcEeEcCCCCCCccc---------cEEE---EECCEEEEECCcCCCcccceEEEEEC
Confidence 222211 24689987655432110 0111 233446663111 135789999
Q ss_pred CCCcEEE
Q 035860 406 ENDDCHL 412 (440)
Q Consensus 406 ~~~~~~~ 412 (440)
++++|..
T Consensus 470 ~~~~W~~ 476 (480)
T PHA02790 470 RTYSWNI 476 (480)
T ss_pred CCCeEEe
Confidence 9999863
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.65 E-value=1.6e-05 Score=76.59 Aligned_cols=157 Identities=11% Similarity=0.107 Sum_probs=95.9
Q ss_pred eEEEE-ccccc-ccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCc
Q 035860 173 HVHLW-NPLRR-EVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 173 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W 249 (440)
.+++. +|..+ +|..+++++...... . +..++. +|+.++ ..+......++.|+.. ++.|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~------------~-~~~~~~-----~lyviGG~~~~~~~~~v~~~d~~-~~~w 100 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYG------------A-SVSVEN-----GIYYIGGSNSSERFSSVYRITLD-ESKE 100 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccce------------E-EEEECC-----EEEEEcCCCCCCCceeEEEEEEc-CCce
Confidence 45655 45433 688887665442111 1 222221 466654 2222234578899999 9988
Q ss_pred ----ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEee-CCCCCCCCCCCCEEEEeCCeE
Q 035860 250 ----RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKID-LPIDCNMEPRSPSLINLRGNL 323 (440)
Q Consensus 250 ----~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~~~L~~~~G~L 323 (440)
+.++.+|...... .++.++|.+|-+....... ...+.+||+.+++|..++ +|.... .....+..+|+|
T Consensus 101 ~~~~~~~~~lp~~~~~~---~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r---~~~~~~~~~~~i 174 (323)
T TIGR03548 101 ELICETIGNLPFTFENG---SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR---VQPVCVKLQNEL 174 (323)
T ss_pred eeeeeEcCCCCcCccCc---eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC---CcceEEEECCEE
Confidence 5566666532221 2678899999997643221 257899999999999884 664221 344567889999
Q ss_pred EEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEee
Q 035860 324 ALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIS 363 (440)
Q Consensus 324 ~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~ 363 (440)
+++.... .....++|..+-. +.+|+++..++
T Consensus 175 Yv~GG~~-------~~~~~~~~~yd~~--~~~W~~~~~~~ 205 (323)
T TIGR03548 175 YVFGGGS-------NIAYTDGYKYSPK--KNQWQKVADPT 205 (323)
T ss_pred EEEcCCC-------CccccceEEEecC--CCeeEECCCCC
Confidence 9998654 1123456776642 46899876553
No 12
>PLN02193 nitrile-specifier protein
Probab=98.64 E-value=7.2e-06 Score=83.10 Aligned_cols=205 Identities=11% Similarity=0.050 Sum_probs=119.8
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCcc
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
..++++||.+.+|..+|+........ . .......++. +++.+. .........+++|+.. ++.|+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~---~------~~~~~v~~~~-----~lYvfGG~~~~~~~ndv~~yD~~-t~~W~ 257 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLS---C------LGVRMVSIGS-----TLYVFGGRDASRQYNGFYSFDTT-TNEWK 257 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCc---c------cceEEEEECC-----EEEEECCCCCCCCCccEEEEECC-CCEEE
Confidence 46899999999999887542211000 0 0111222221 455553 2222234568999999 99999
Q ss_pred eeccC---CcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEE
Q 035860 251 IISSS---LALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALV 326 (440)
Q Consensus 251 ~~~~~---p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv 326 (440)
.+..+ |...... ..+.+++.+|.+....... ...+.+||+.+.+|..++.|...........++..+|+++++
T Consensus 258 ~l~~~~~~P~~R~~h---~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 258 LLTPVEEGPTPRSFH---SMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred EcCcCCCCCCCccce---EEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence 98755 3221111 2567899999887643221 246889999999999886553322222445677889999998
Q ss_pred EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec-----------
Q 035860 327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF----------- 395 (440)
Q Consensus 327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~----------- 395 (440)
.... ....-++|+++-. +..|+++..+...+.. +. ..+.+..++. |++.-.
T Consensus 335 GG~~-------g~~~~dv~~yD~~--t~~W~~~~~~g~~P~~------R~--~~~~~~~~~~-iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 335 YGFN-------GCEVDDVHYYDPV--QDKWTQVETFGVRPSE------RS--VFASAAVGKH-IVIFGGEIAMDPLAHVG 396 (470)
T ss_pred ECCC-------CCccCceEEEECC--CCEEEEeccCCCCCCC------cc--eeEEEEECCE-EEEECCccCCccccccC
Confidence 8643 1123567888753 5689998655322111 00 1111222444 544211
Q ss_pred ---CCCceEEEECCCCcEEE
Q 035860 396 ---RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 396 ---~~~~~~~yd~~~~~~~~ 412 (440)
..+.+..||+.+++|..
T Consensus 397 ~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 397 PGQLTDGTFALDTETLQWER 416 (470)
T ss_pred ccceeccEEEEEcCcCEEEE
Confidence 11357999999999874
No 13
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.63 E-value=1.5e-08 Score=68.01 Aligned_cols=43 Identities=33% Similarity=0.489 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHH
Q 035860 42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAH 84 (440)
Q Consensus 42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~ 84 (440)
..||+|++.+||.+|+++++++++.|||+|++++.++.+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 5799999999999999999999999999999999999886654
No 14
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.59 E-value=1.2e-08 Score=65.87 Aligned_cols=39 Identities=46% Similarity=0.788 Sum_probs=36.7
Q ss_pred CcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHH
Q 035860 44 FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAH 82 (440)
Q Consensus 44 LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~ 82 (440)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987754
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.55 E-value=3.8e-05 Score=74.79 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=105.5
Q ss_pred EeeeccEEEeeecCCCcceeEEEEc--ccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860 154 YFVAYGFICFGESSCHVKDHVHLWN--PLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV 230 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~~~~~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~ 230 (440)
.+..++-|.+.... ....+++.+ |.+++|..+|+++...... ......+. +|.+++ ..
T Consensus 13 ~~~~~~~vyv~GG~--~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~------------~~~~~~~~-----~iYv~GG~~ 73 (346)
T TIGR03547 13 GAIIGDKVYVGLGS--AGTSWYKLDLKKPSKGWQKIADFPGGPRNQ------------AVAAAIDG-----KLYVFGGIG 73 (346)
T ss_pred EEEECCEEEEEccc--cCCeeEEEECCCCCCCceECCCCCCCCccc------------ceEEEECC-----EEEEEeCCC
Confidence 33455655554331 124577777 4788899999876321111 10112221 566664 11
Q ss_pred c-c-----CCcceEEEEEeCCCCCcceecc-CCcccCCCCCcccE-EEcCeEEEEEecCCCC------------------
Q 035860 231 I-E-----LSDYKIAVYTLGKDDSWRIISS-SLALRPDVSYEFGV-SAYGDMHWISFDQNNI------------------ 284 (440)
Q Consensus 231 ~-~-----~~~~~~~Vyss~~t~~W~~~~~-~p~~~~~~~~~~~v-~~~G~lywl~~~~~~~------------------ 284 (440)
. . .....++.|+.. ++.|+.+.. +|... .. . .++ .++|.||-+.......
T Consensus 74 ~~~~~~~~~~~~~v~~Yd~~-~~~W~~~~~~~p~~~-~~-~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 74 KANSEGSPQVFDDVYRYDPK-KNSWQKLDTRSPVGL-LG-A-SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred CCCCCCcceecccEEEEECC-CCEEecCCCCCCCcc-cc-e-eEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 1 0 023468999999 999999873 22211 11 1 133 5799999886543110
Q ss_pred -----------------ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEE
Q 035860 285 -----------------HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWV 346 (440)
Q Consensus 285 -----------------~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~ 346 (440)
...+..||+.+.+|..+ ++|.... ....++..+|+|+++..... ......++|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r---~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~ 221 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT---AGSAIVHKGNKLLLINGEIK-----PGLRTAEVKQ 221 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcC---CCceEEEECCEEEEEeeeeC-----CCccchheEE
Confidence 13689999999999988 4553211 34567888999999986531 1123456676
Q ss_pred eeccCCCcccceeEEeecC
Q 035860 347 LKDHYERNEWSKAYKISTD 365 (440)
Q Consensus 347 l~~~g~~~~W~~~~~i~~~ 365 (440)
.+-..+...|+++..|+..
T Consensus 222 y~~~~~~~~W~~~~~m~~~ 240 (346)
T TIGR03547 222 YLFTGGKLEWNKLPPLPPP 240 (346)
T ss_pred EEecCCCceeeecCCCCCC
Confidence 5422234589988777643
No 16
>PLN02153 epithiospecifier protein
Probab=98.52 E-value=9.5e-06 Score=78.85 Aligned_cols=189 Identities=9% Similarity=0.033 Sum_probs=105.2
Q ss_pred EeeeccEEEeeecCC----CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-
Q 035860 154 YFVAYGFICFGESSC----HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY- 228 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~----~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~- 228 (440)
+...++.|.+..... .....++++||.+.+|..+|+........ . .++....++. +|+.++
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~---~------~~~~~~~~~~-----~iyv~GG 93 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRIS---C------LGVRMVAVGT-----KLYIFGG 93 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCc---c------CceEEEEECC-----EEEEECC
Confidence 344566665543311 01247899999999999988654221110 0 0111112221 566664
Q ss_pred ccccCCcceEEEEEeCCCCCcceeccC-----CcccCCCCCcccEEEcCeEEEEEecCCCC-------ceEEEEEEcCCc
Q 035860 229 PVIELSDYKIAVYTLGKDDSWRIISSS-----LALRPDVSYEFGVSAYGDMHWISFDQNNI-------HTCIFSFDFNKE 296 (440)
Q Consensus 229 ~~~~~~~~~~~Vyss~~t~~W~~~~~~-----p~~~~~~~~~~~v~~~G~lywl~~~~~~~-------~~~Il~fD~~~e 296 (440)
..+......+++|+.. ++.|+.++.+ |.... . ...+..+|.+|-+....... ...+.+||+.+.
T Consensus 94 ~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~p~~R~-~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 94 RDEKREFSDFYSYDTV-KNEWTFLTKLDEEGGPEART-F--HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred CCCCCccCcEEEEECC-CCEEEEeccCCCCCCCCCce-e--eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 2222233468999999 9999988755 22111 1 12677899999886643211 136889999999
Q ss_pred cEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCC--CCCCCccEEEEEEeeccCCCcccceeEEe
Q 035860 297 EFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDY--DGDTEYIWIEIWVLKDHYERNEWSKAYKI 362 (440)
Q Consensus 297 ~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~--~~~~~~~~l~IW~l~~~g~~~~W~~~~~i 362 (440)
+|..++.+...........++.++|+|+++....... ........-+||+++-. ...|+++...
T Consensus 170 ~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~ 235 (341)
T PLN02153 170 KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETT 235 (341)
T ss_pred eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC--CCcEEecccc
Confidence 9998754321111113445778899999987532000 00000112246666542 4679988644
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.44 E-value=6.2e-05 Score=74.13 Aligned_cols=181 Identities=12% Similarity=0.018 Sum_probs=105.6
Q ss_pred EEeeeccEEEeeecCCCcceeEEEEccc--ccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c
Q 035860 153 IYFVAYGFICFGESSCHVKDHVHLWNPL--RREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P 229 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~ 229 (440)
..+..++-|.+.... ....+++.++. +++|..+|+++...... ......+ + +|..++ .
T Consensus 33 ~~~~~~~~iyv~gG~--~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~------------~~~v~~~---~--~IYV~GG~ 93 (376)
T PRK14131 33 TGAIDNNTVYVGLGS--AGTSWYKLDLNAPSKGWTKIAAFPGGPREQ------------AVAAFID---G--KLYVFGGI 93 (376)
T ss_pred eEEEECCEEEEEeCC--CCCeEEEEECCCCCCCeEECCcCCCCCccc------------ceEEEEC---C--EEEEEcCC
Confidence 345567766654431 12456777764 57899998765321111 1011222 1 455553 1
Q ss_pred cc-c-----CCcceEEEEEeCCCCCcceeccC-CcccCCCCCcccEE-EcCeEEEEEecCCC------------------
Q 035860 230 VI-E-----LSDYKIAVYTLGKDDSWRIISSS-LALRPDVSYEFGVS-AYGDMHWISFDQNN------------------ 283 (440)
Q Consensus 230 ~~-~-----~~~~~~~Vyss~~t~~W~~~~~~-p~~~~~~~~~~~v~-~~G~lywl~~~~~~------------------ 283 (440)
.. . .....+++|+.. +++|+.+... |... ... .++. .+|.||-+......
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~-~n~W~~~~~~~p~~~-~~~--~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~ 169 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPK-TNSWQKLDTRSPVGL-AGH--VAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP 169 (376)
T ss_pred CCCCCCCceeEcccEEEEeCC-CCEEEeCCCCCCCcc-cce--EEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhh
Confidence 11 0 113468999999 9999998753 2221 111 1344 79999999764310
Q ss_pred -----------------CceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEE
Q 035860 284 -----------------IHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIW 345 (440)
Q Consensus 284 -----------------~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW 345 (440)
....+..||+.+.+|..+ ++|.... ....++..+++|+++..... ......++|
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~-----~~~~~~~~~ 241 (376)
T PRK14131 170 KDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIK-----PGLRTDAVK 241 (376)
T ss_pred hhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeEC-----CCcCChhhe
Confidence 013699999999999987 4553111 33457778999999996531 122456677
Q ss_pred EeeccCCCcccceeEEeec
Q 035860 346 VLKDHYERNEWSKAYKIST 364 (440)
Q Consensus 346 ~l~~~g~~~~W~~~~~i~~ 364 (440)
..+-..++..|+++..|+.
T Consensus 242 ~~~~~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 242 QGKFTGNNLKWQKLPDLPP 260 (376)
T ss_pred EEEecCCCcceeecCCCCC
Confidence 6653223568999887764
No 18
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.41 E-value=1.6e-05 Score=82.06 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=127.7
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc-ccCCcceEEEEEeCCCCC
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV-IELSDYKIAVYTLGKDDS 248 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~-~~~~~~~~~Vyss~~t~~ 248 (440)
...+..+||.+++|..+.+++...... +.+.-.. +|.+++ .. +......++.|+.. ++.
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~--------------~~~~~~~----~lYv~GG~~~~~~~l~~ve~YD~~-~~~ 360 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRV--------------GVAVLNG----KLYVVGGYDSGSDRLSSVERYDPR-TNQ 360 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccccc--------------cEEEECC----EEEEEccccCCCcccceEEEecCC-CCc
Confidence 356778999999999998887653211 3332221 666664 22 33456789999999 999
Q ss_pred cceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEE
Q 035860 249 WRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALV 326 (440)
Q Consensus 249 W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv 326 (440)
|..++.+....... ..+.++|.+|-+...+... ...+-.||..+.+|..+ +++... .....++++|+|+++
T Consensus 361 W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r----~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR----SGHGVAVLGGKLYII 433 (571)
T ss_pred eeccCCccCccccc---eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce----eeeEEEEECCEEEEE
Confidence 99988876633222 2678999999998776332 36799999999999988 455522 556789999999999
Q ss_pred EcCCCCCCCCCCccEEEEEEeecc-CCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe-ecC----CCce
Q 035860 327 TFPTDDYDGDTEYIWIEIWVLKDH-YERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD-TFR----HDNK 400 (440)
Q Consensus 327 ~~~~~~~~~~~~~~~l~IW~l~~~-g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~----~~~~ 400 (440)
+.... ... .+=..+-| -....|+.+..|+..... ..++. .+| .||.. -+. ...+
T Consensus 434 GG~~~------~~~--~l~sve~YDP~t~~W~~~~~M~~~R~~---------~g~a~--~~~-~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 434 GGGDG------SSN--CLNSVECYDPETNTWTLIAPMNTRRSG---------FGVAV--LNG-KIYVVGGFDGTSALSSV 493 (571)
T ss_pred cCcCC------Ccc--ccceEEEEcCCCCceeecCCccccccc---------ceEEE--ECC-EEEEECCccCCCccceE
Confidence 97651 111 11111212 135689998888754321 11222 244 45552 111 1236
Q ss_pred EEEECCCCcEEE
Q 035860 401 FVLDLENDDCHL 412 (440)
Q Consensus 401 ~~yd~~~~~~~~ 412 (440)
-.||+++++|..
T Consensus 494 E~ydp~~~~W~~ 505 (571)
T KOG4441|consen 494 ERYDPETNQWTM 505 (571)
T ss_pred EEEcCCCCceeE
Confidence 789999999975
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.33 E-value=3.7e-05 Score=79.51 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=110.9
Q ss_pred EEeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec-
Q 035860 153 IYFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP- 229 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~- 229 (440)
.+.+.+|-|.+.++.. .....+.++||.|++|..+|+++..... ..+..++. +|..++-
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-------------~~~~~~~~-----~iYv~GG~ 398 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-------------PCVVNVNN-----LIYVIGGI 398 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-------------ceEEEECC-----EEEEECCc
Confidence 3445566665444311 1234688999999999999887654211 11222221 4555541
Q ss_pred -cccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC----ceEEEEEEcCCccEEEee-C
Q 035860 230 -VIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI----HTCIFSFDFNKEEFKKID-L 303 (440)
Q Consensus 230 -~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~Il~fD~~~e~~~~i~-l 303 (440)
.+......+++|+.. ++.|+.+..+|...... .++..+|.+|-+....... ...+..||+.+++|..++ +
T Consensus 399 ~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 474 (534)
T PHA03098 399 SKNDELLKTVECFSLN-TNKWSKGSPLPISHYGG---CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL 474 (534)
T ss_pred CCCCcccceEEEEeCC-CCeeeecCCCCccccCc---eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC
Confidence 112224578999999 99999988776532222 2678899999887543211 135999999999999884 3
Q ss_pred CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEee
Q 035860 304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIS 363 (440)
Q Consensus 304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~ 363 (440)
|... ....++..+|+|++++.... ....-.||..+-. ...|+.....|
T Consensus 475 ~~~r----~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~--~~~W~~~~~~p 522 (534)
T PHA03098 475 NFPR----INASLCIFNNKIYVVGGDKY------EYYINEIEVYDDK--TNTWTLFCKFP 522 (534)
T ss_pred Cccc----ccceEEEECCEEEEEcCCcC------CcccceeEEEeCC--CCEEEecCCCc
Confidence 3321 34566778999999986541 1113357777653 56898876644
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.32 E-value=3.7e-05 Score=78.14 Aligned_cols=143 Identities=12% Similarity=-0.036 Sum_probs=96.2
Q ss_pred EEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecccc
Q 035860 153 IYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIE 232 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~ 232 (440)
..++.+|-|.+.++. .....+-.++|.+++|..+|+++..... ..+..++. +|.+++...
T Consensus 313 ~~v~~~~~iYviGG~-~~~~sve~ydp~~n~W~~~~~l~~~r~~-------------~~~~~~~g-----~IYviGG~~- 372 (480)
T PHA02790 313 SGVPANNKLYVVGGL-PNPTSVERWFHGDAAWVNMPSLLKPRCN-------------PAVASINN-----VIYVIGGHS- 372 (480)
T ss_pred eEEEECCEEEEECCc-CCCCceEEEECCCCeEEECCCCCCCCcc-------------cEEEEECC-----EEEEecCcC-
Confidence 345677877655442 1124567899999999999988754211 11223332 566664111
Q ss_pred CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCC
Q 035860 233 LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEP 311 (440)
Q Consensus 233 ~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~ 311 (440)
.....+++|+.. ++.|..++.++...... ..+.++|.+|-+.. ..-.||+++++|+.+ ++|...
T Consensus 373 ~~~~~ve~ydp~-~~~W~~~~~m~~~r~~~---~~~~~~~~IYv~GG-------~~e~ydp~~~~W~~~~~m~~~r---- 437 (480)
T PHA02790 373 ETDTTTEYLLPN-HDQWQFGPSTYYPHYKS---CALVFGRRLFLVGR-------NAEFYCESSNTWTLIDDPIYPR---- 437 (480)
T ss_pred CCCccEEEEeCC-CCEEEeCCCCCCccccc---eEEEECCEEEEECC-------ceEEecCCCCcEeEcCCCCCCc----
Confidence 123568999999 99999988776533322 26789999998763 356799999999988 344322
Q ss_pred CCCEEEEeCCeEEEEEcCC
Q 035860 312 RSPSLINLRGNLALVTFPT 330 (440)
Q Consensus 312 ~~~~L~~~~G~L~lv~~~~ 330 (440)
....+++.+|+|++++...
T Consensus 438 ~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 438 DNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred cccEEEEECCEEEEECCcC
Confidence 5567899999999999754
No 21
>PLN02193 nitrile-specifier protein
Probab=98.25 E-value=0.00037 Score=70.68 Aligned_cols=188 Identities=8% Similarity=-0.057 Sum_probs=108.6
Q ss_pred EeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860 154 YFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV 230 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~ 230 (440)
....++.|.+..... .....++++||.|.+|..++++....... + .+ ++... .=||+.+. ..
T Consensus 224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R---~-------~h-~~~~~----~~~iYv~GG~~ 288 (470)
T PLN02193 224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR---S-------FH-SMAAD----EENVYVFGGVS 288 (470)
T ss_pred EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc---c-------ce-EEEEE----CCEEEEECCCC
Confidence 445566665543311 12357899999999999998763211111 1 11 22211 12566664 22
Q ss_pred ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeC----CCC
Q 035860 231 IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDL----PID 306 (440)
Q Consensus 231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~l----P~~ 306 (440)
.......+++|+.. ++.|..+...............+.++|.+|.+..........+..||+.+.+|..++. |..
T Consensus 289 ~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~ 367 (470)
T PLN02193 289 ATARLKTLDSYNIV-DKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE 367 (470)
T ss_pred CCCCcceEEEEECC-CCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC
Confidence 22234568999999 9999987642111011111125678999998865332112479999999999998842 322
Q ss_pred CCCCCCCCEEEEeCCeEEEEEcCCCC-CCCCCCc--cEEEEEEeeccCCCcccceeEEee
Q 035860 307 CNMEPRSPSLINLRGNLALVTFPTDD-YDGDTEY--IWIEIWVLKDHYERNEWSKAYKIS 363 (440)
Q Consensus 307 ~~~~~~~~~L~~~~G~L~lv~~~~~~-~~~~~~~--~~l~IW~l~~~g~~~~W~~~~~i~ 363 (440)
. .....+..+++|+++...... ...+... ..-++|.++-. +..|+++..++
T Consensus 368 R----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~ 421 (470)
T PLN02193 368 R----SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFG 421 (470)
T ss_pred c----ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcccCC
Confidence 1 344567888999999875310 0000001 12268999864 56899876654
No 22
>PLN02153 epithiospecifier protein
Probab=98.21 E-value=0.00028 Score=68.54 Aligned_cols=188 Identities=11% Similarity=-0.004 Sum_probs=105.3
Q ss_pred EeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCC-CCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c
Q 035860 154 YFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYC-DYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P 229 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~ 229 (440)
+.+.+|.|.+..... .....+.++||.|.+|..++++.... +.. + ..+ ++.... + |+++++ .
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-------R--~~~-~~~~~~--~--~iyv~GG~ 146 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-------R--TFH-SMASDE--N--HVYVFGGV 146 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC-------c--eee-EEEEEC--C--EEEEECCc
Confidence 445566665443311 11347899999999999998652210 110 0 011 222111 1 466664 1
Q ss_pred ccc------CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC-------C--CceEEEEEEcC
Q 035860 230 VIE------LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN-------N--IHTCIFSFDFN 294 (440)
Q Consensus 230 ~~~------~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~-------~--~~~~Il~fD~~ 294 (440)
... .....+++|+.. ++.|..++.+............+.++|.+|-+..... . ....+.+||+.
T Consensus 147 ~~~~~~~~~~~~~~v~~yd~~-~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~ 225 (341)
T PLN02153 147 SKGGLMKTPERFRTIEAYNIA-DGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA 225 (341)
T ss_pred cCCCccCCCcccceEEEEECC-CCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC
Confidence 110 112468999999 9999988754321011111125678999998754221 0 01468999999
Q ss_pred CccEEEee----CCCCCCCCCCCCEEEEeCCeEEEEEcCCCCC-CCC--CCccEEEEEEeeccCCCcccceeEEe
Q 035860 295 KEEFKKID----LPIDCNMEPRSPSLINLRGNLALVTFPTDDY-DGD--TEYIWIEIWVLKDHYERNEWSKAYKI 362 (440)
Q Consensus 295 ~e~~~~i~----lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~-~~~--~~~~~l~IW~l~~~g~~~~W~~~~~i 362 (440)
+.+|..++ +|... .....+..+++|+++......- ..+ .....-+||.++-. +..|+++...
T Consensus 226 ~~~W~~~~~~g~~P~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~ 294 (341)
T PLN02153 226 SGKWTEVETTGAKPSAR----SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGEC 294 (341)
T ss_pred CCcEEeccccCCCCCCc----ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCC
Confidence 99999884 34322 3345677889999998742000 000 01112379999863 5689987654
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.05 E-value=0.00053 Score=66.08 Aligned_cols=138 Identities=10% Similarity=-0.027 Sum_probs=84.0
Q ss_pred eeEEEEccccccc----ccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCC
Q 035860 172 DHVHLWNPLRREV----LRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKD 246 (440)
Q Consensus 172 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t 246 (440)
..+..+|+.+++| ..+|+++..... ..+..++. +|..++ ..+......+++|+.. +
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-------------~~~~~~~~-----~iYv~GG~~~~~~~~~v~~yd~~-~ 148 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFEN-------------GSACYKDG-----TLYVGGGNRNGKPSNKSYLFNLE-T 148 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccC-------------ceEEEECC-----EEEEEeCcCCCccCceEEEEcCC-C
Confidence 5788899999987 667776544211 11222322 566654 1122234578999999 9
Q ss_pred CCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeC-CCC-CCCCC-CCCEEEEeCCeE
Q 035860 247 DSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDL-PID-CNMEP-RSPSLINLRGNL 323 (440)
Q Consensus 247 ~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~l-P~~-~~~~~-~~~~L~~~~G~L 323 (440)
+.|..++.+|...... ...+.++|.+|-+..........+.+||+.+++|..++. +.. ..... ....++..+|+|
T Consensus 149 ~~W~~~~~~p~~~r~~--~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~i 226 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQ--PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLL 226 (323)
T ss_pred CCeeECCCCCCCCCCc--ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEE
Confidence 9999988766421111 125678999999876542222346899999999998742 210 11000 223345557899
Q ss_pred EEEEcCC
Q 035860 324 ALVTFPT 330 (440)
Q Consensus 324 ~lv~~~~ 330 (440)
+++....
T Consensus 227 yv~GG~~ 233 (323)
T TIGR03548 227 LCIGGFN 233 (323)
T ss_pred EEECCcC
Confidence 9888654
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.99 E-value=0.002 Score=63.55 Aligned_cols=92 Identities=15% Similarity=0.052 Sum_probs=59.9
Q ss_pred ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC----ceEEEEEEcCCccEEEe-eCCCCCCCC
Q 035860 236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI----HTCIFSFDFNKEEFKKI-DLPIDCNME 310 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~Il~fD~~~e~~~~i-~lP~~~~~~ 310 (440)
..+++|+.. ++.|..++.+|...... ...+.++|.||.+....... ......||.++.+|..+ ++|......
T Consensus 189 ~~v~~YD~~-t~~W~~~~~~p~~~~~~--~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 189 KEVLSYDPS-TNQWKNAGESPFLGTAG--SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred ceEEEEECC-CCeeeECCcCCCCCCCc--ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 468999999 99999988776522222 12577899999998643211 13455678899999887 555432111
Q ss_pred -C---CCCEEEEeCCeEEEEEcCC
Q 035860 311 -P---RSPSLINLRGNLALVTFPT 330 (440)
Q Consensus 311 -~---~~~~L~~~~G~L~lv~~~~ 330 (440)
. .....+.++|+|+++....
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred cCCccceEeceeECCEEEEeeccC
Confidence 0 1112466899999998653
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.88 E-value=0.0033 Score=61.17 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=57.9
Q ss_pred ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEE--cCCccEEEe-eCCCCCCCC
Q 035860 236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFD--FNKEEFKKI-DLPIDCNME 310 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD--~~~e~~~~i-~lP~~~~~~ 310 (440)
..+++|+.. ++.|+.++.+|....... ..+.++|.||-+....... ...+..|| .++.+|..+ ++|......
T Consensus 168 ~~v~~YDp~-t~~W~~~~~~p~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~ 244 (346)
T TIGR03547 168 KNVLSYDPS-TNQWRNLGENPFLGTAGS--AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS 244 (346)
T ss_pred ceEEEEECC-CCceeECccCCCCcCCCc--eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence 469999999 999999987764212221 2567899999987653211 12344454 566799877 555422110
Q ss_pred C---CCCEEEEeCCeEEEEEcC
Q 035860 311 P---RSPSLINLRGNLALVTFP 329 (440)
Q Consensus 311 ~---~~~~L~~~~G~L~lv~~~ 329 (440)
. .....++++|+|+++...
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred cccccEEeeeEECCEEEEeecC
Confidence 0 122367789999999864
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2e-05 Score=71.85 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=39.5
Q ss_pred hhccccCCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhH
Q 035860 35 TTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF 80 (440)
Q Consensus 35 ~~~~~~~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F 80 (440)
..+-+.+..|||||++.||+.||.|+|+++..|||+|+++-++..-
T Consensus 92 ~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 92 NNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 3334446899999999999999999999999999999999887543
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.59 E-value=0.0021 Score=59.70 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=40.1
Q ss_pred CCCc----HHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHh
Q 035860 42 MEFP----SNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVM 86 (440)
Q Consensus 42 ~~LP----~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~ 86 (440)
..|| +++.+.||+.|...+|+.|..|||+|+++++++...+....
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 4689 99999999999999999999999999999999877665543
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.35 E-value=0.014 Score=55.89 Aligned_cols=221 Identities=10% Similarity=0.117 Sum_probs=114.8
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe------cc--ccCCcceEEEEE
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY------PV--IELSDYKIAVYT 242 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~------~~--~~~~~~~~~Vys 242 (440)
.+.+|++|--+.+|+.+-.+..+.+.. ++ .+...++. ++.++ +. .-...--..+|+
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRs-----------sh-q~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd 160 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRS-----------SH-QAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFD 160 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCc-----------cc-eeEEeccC----eEEEeccccCCcchhhhhhhhheeeee
Confidence 367899999999999873222221111 11 22233322 22221 10 112233467899
Q ss_pred eCCCCCcceec--cCCcccCCCCCcccEEEcCeEEEEEecCCCC----ceEEEEEEcCCccEEEeeCCCCCCCCCCCCEE
Q 035860 243 LGKDDSWRIIS--SSLALRPDVSYEFGVSAYGDMHWISFDQNNI----HTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSL 316 (440)
Q Consensus 243 s~~t~~W~~~~--~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L 316 (440)
+. ++.|..+. +-|....-.. ..++-+-.+-+-...+... -.-|.+||+++=+|+.+..+-........+++
T Consensus 161 ~~-trkweql~~~g~PS~RSGHR--MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~ 237 (521)
T KOG1230|consen 161 LK-TRKWEQLEFGGGPSPRSGHR--MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQF 237 (521)
T ss_pred ec-cchheeeccCCCCCCCccce--eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceE
Confidence 99 99999986 3333111110 0122222222222222111 14689999999999999765432222245566
Q ss_pred EEe-CCeEEEEEcCCCCC---CCCCCccEEEEEEeecc---CCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860 317 INL-RGNLALVTFPTDDY---DGDTEYIWIEIWVLKDH---YERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW 389 (440)
Q Consensus 317 ~~~-~G~L~lv~~~~~~~---~~~~~~~~l~IW~l~~~---g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (440)
.+. .|.+++........ ..+.+..+-++|.|+.. .++-.|+++..+...+-... .+.|.+..++..
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs-------gfsv~va~n~ka 310 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS-------GFSVAVAKNHKA 310 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC-------ceeEEEecCCce
Confidence 666 78887776432111 01344567899999754 12457888876665443211 022222233333
Q ss_pred EEEe-------------ecCCCceEEEECCCCcEEE-EEecc
Q 035860 390 MVLD-------------TFRHDNKFVLDLENDDCHL-RICPV 417 (440)
Q Consensus 390 i~l~-------------~~~~~~~~~yd~~~~~~~~-~~~~~ 417 (440)
++|. .---+.++.||+..++|.. .+.+.
T Consensus 311 l~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 311 LFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred EEecceecccccchhhhhhhhhhhhheecccchhhHhhhccC
Confidence 3331 0012567899999999865 44433
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.63 E-value=0.073 Score=48.13 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=77.5
Q ss_pred cceEEEEEeCCCCCcceec---cCCcccCCCCCcccEEEcCeEEEEEecCCCC----------ceEEEEEEcCCccEEEe
Q 035860 235 DYKIAVYTLGKDDSWRIIS---SSLALRPDVSYEFGVSAYGDMHWISFDQNNI----------HTCIFSFDFNKEEFKKI 301 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~---~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----------~~~Il~fD~~~e~~~~i 301 (440)
...+++++.. |-.|+.+. .+|....+. . ++.++|.+|-...+.... -..|++||+.++.|..-
T Consensus 156 S~d~h~ld~~-TmtWr~~~Tkg~PprwRDFH-~--a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 156 SQDTHVLDFA-TMTWREMHTKGDPPRWRDFH-T--ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred hccceeEecc-ceeeeehhccCCCchhhhhh-h--hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence 4557888888 99999886 344333332 2 677889999887655431 16899999999999765
Q ss_pred eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEee
Q 035860 302 DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIS 363 (440)
Q Consensus 302 ~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~ 363 (440)
+--.-.......-...+++|+++++.... ......--++|..+. ...-|+++..=.
T Consensus 232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYn----g~ln~HfndLy~FdP--~t~~W~~I~~~G 287 (392)
T KOG4693|consen 232 PENTMKPGGRRSHSTFVYNGKMYMFGGYN----GTLNVHFNDLYCFDP--KTSMWSVISVRG 287 (392)
T ss_pred CCCCcCCCcccccceEEEcceEEEecccc----hhhhhhhcceeeccc--ccchheeeeccC
Confidence 21111111124556788999999999765 111223347788876 356798864433
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.42 E-value=0.21 Score=45.30 Aligned_cols=217 Identities=12% Similarity=0.095 Sum_probs=117.1
Q ss_pred cceeEEEEcccccccccCCCCCCC--CCCCCCccccccc--ccceEEEeeeCCCCCEEEEEEe-c-cccCCcceEEEEEe
Q 035860 170 VKDHVHLWNPLRREVLRLPKLGYY--CDYQHDYYDAYRG--LRGHFGMGYDSATGTYKIVQSY-P-VIELSDYKIAVYTL 243 (440)
Q Consensus 170 ~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~~--~~~~~~~g~d~~~~~ykVv~~~-~-~~~~~~~~~~Vyss 243 (440)
..-.+.|.|-.+-+|..+||--.. .+.. |. ..+ ..++....|+. |+...+ . +++.......-|+.
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~---yp-~VPyqRYGHtvV~y~d-----~~yvWGGRND~egaCN~Ly~fDp 112 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESP---YP-AVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGACNLLYEFDP 112 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCC---CC-ccchhhcCceEEEEcc-----eEEEEcCccCcccccceeeeecc
Confidence 357899999999999999983211 1111 10 000 00122233332 333332 2 22445556788999
Q ss_pred CCCCCcceec---cCCcccCCCCCcccEEEcCeEEEEEecCCCC---ceEEEEEEcCCccEEEe---eCCCCCCCCCCCC
Q 035860 244 GKDDSWRIIS---SSLALRPDVSYEFGVSAYGDMHWISFDQNNI---HTCIFSFDFNKEEFKKI---DLPIDCNMEPRSP 314 (440)
Q Consensus 244 ~~t~~W~~~~---~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~Il~fD~~~e~~~~i---~lP~~~~~~~~~~ 314 (440)
+ ++.|++.+ .+|... ...+ +++++..+|-......+. ...+.++|+++.+|+.+ --|+.-.+ .-
T Consensus 113 ~-t~~W~~p~v~G~vPgaR-DGHs--AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD---FH 185 (392)
T KOG4693|consen 113 E-TNVWKKPEVEGFVPGAR-DGHS--ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD---FH 185 (392)
T ss_pred c-cccccccceeeecCCcc-CCce--eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh---hh
Confidence 9 99998765 334322 2222 677788888776433221 25789999999999988 34554332 22
Q ss_pred EEEEeCCeEEEEEcCCCCCC---CCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEE
Q 035860 315 SLINLRGNLALVTFPTDDYD---GDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMV 391 (440)
Q Consensus 315 ~L~~~~G~L~lv~~~~~~~~---~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 391 (440)
.-.+++|..+++.....+.. ...+...-.|-.|+-. ++.|..-..-+..+. ++ .... ....+|.+-+
T Consensus 186 ~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~-GR-RSHS------~fvYng~~Y~ 255 (392)
T KOG4693|consen 186 TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPG-GR-RSHS------TFVYNGKMYM 255 (392)
T ss_pred hhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCC-cc-cccc------eEEEcceEEE
Confidence 34556788888876542211 1122233455566542 467987622222111 00 1111 1113555333
Q ss_pred Eeec------CCCceEEEECCCCcEEE
Q 035860 392 LDTF------RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 392 l~~~------~~~~~~~yd~~~~~~~~ 412 (440)
|.-+ .-+.+..||+++..|.+
T Consensus 256 FGGYng~ln~HfndLy~FdP~t~~W~~ 282 (392)
T KOG4693|consen 256 FGGYNGTLNVHFNDLYCFDPKTSMWSV 282 (392)
T ss_pred ecccchhhhhhhcceeecccccchhee
Confidence 3211 11467899999999986
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.36 E-value=0.25 Score=50.26 Aligned_cols=153 Identities=11% Similarity=0.090 Sum_probs=94.7
Q ss_pred eEEEEEeCCCCCcceecc---CCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEeeC----CCCC
Q 035860 237 KIAVYTLGKDDSWRIISS---SLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKIDL----PIDC 307 (440)
Q Consensus 237 ~~~Vyss~~t~~W~~~~~---~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i~l----P~~~ 307 (440)
.+.+++.. +..|..... .|.. ... ...+.++..||.+....... ...|.+||+.+.+|..+.. |+..
T Consensus 89 dl~~~d~~-~~~w~~~~~~g~~p~~-r~g--~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLE-SQLWTKPAATGDEPSP-RYG--HSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecC-CcccccccccCCCCCc-ccc--eeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc
Confidence 58888888 888876552 2321 111 22677888888887766321 2589999999999987732 3322
Q ss_pred CCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcC
Q 035860 308 NMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAG 387 (440)
Q Consensus 308 ~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 387 (440)
....++..+.+|.+...... .....-++|+++-. ...|.++.+....+.... .+.+.+. ++
T Consensus 165 ----~~Hs~~~~g~~l~vfGG~~~-----~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~-------gH~~~~~-~~ 225 (482)
T KOG0379|consen 165 ----AGHSATVVGTKLVVFGGIGG-----TGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRY-------GHAMVVV-GN 225 (482)
T ss_pred ----ccceEEEECCEEEEECCccC-----cccceeeeeeeccc--cccceecccCCCCCCCCC-------CceEEEE-CC
Confidence 44566777789999887651 12257899999863 456999988876554211 1222321 22
Q ss_pred cEEEEe-e----cCCCceEEEECCCCcEEE
Q 035860 388 RWMVLD-T----FRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 388 ~~i~l~-~----~~~~~~~~yd~~~~~~~~ 412 (440)
.++++. - ...+.+..+|+.+.+|..
T Consensus 226 ~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~ 255 (482)
T KOG0379|consen 226 KLLVFGGGDDGDVYLNDVHILDLSTWEWKL 255 (482)
T ss_pred eEEEEeccccCCceecceEeeecccceeee
Confidence 222221 1 112456899999977653
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.34 E-value=0.34 Score=49.36 Aligned_cols=184 Identities=18% Similarity=0.155 Sum_probs=106.7
Q ss_pred cEEeeeccEEEeeecC--CCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec
Q 035860 152 PIYFVAYGFICFGESS--CHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP 229 (440)
Q Consensus 152 ~i~~s~~GLlcl~~~~--~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~ 229 (440)
.+++..+.|+++.... ......+...|+.|++|..+.+.....+.. .++....++. ||+.++.
T Consensus 117 ~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r----------~~Hs~~~~g~-----~l~vfGG 181 (482)
T KOG0379|consen 117 SLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR----------AGHSATVVGT-----KLVVFGG 181 (482)
T ss_pred eEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc----------ccceEEEECC-----EEEEECC
Confidence 3444445666665542 112348999999999999987655421111 1132333332 5666642
Q ss_pred cc--cCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC-CC--ceEEEEEEcCCccEEEe---
Q 035860 230 VI--ELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN-NI--HTCIFSFDFNKEEFKKI--- 301 (440)
Q Consensus 230 ~~--~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~-~~--~~~Il~fD~~~e~~~~i--- 301 (440)
.+ ......++||+.. +..|..+....... .+....++.+-|.-+|+..... +. -.-+..||+.+.+|..+
T Consensus 182 ~~~~~~~~ndl~i~d~~-~~~W~~~~~~g~~P-~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~ 259 (482)
T KOG0379|consen 182 IGGTGDSLNDLHIYDLE-TSTWSELDTQGEAP-SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTG 259 (482)
T ss_pred ccCcccceeeeeeeccc-cccceecccCCCCC-CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecccc
Confidence 11 1246679999999 99999887322100 0112224444455555544433 22 26799999999888733
Q ss_pred -eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCc-cEEEEEEeeccCCCcccceeEEee
Q 035860 302 -DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEY-IWIEIWVLKDHYERNEWSKAYKIS 363 (440)
Q Consensus 302 -~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~-~~l~IW~l~~~g~~~~W~~~~~i~ 363 (440)
..|... ....++..+..+.++..... ... ..-++|.|+.. +..|.++..+.
T Consensus 260 g~~p~~R----~~h~~~~~~~~~~l~gG~~~-----~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 260 GDLPSPR----SGHSLTVSGDHLLLFGGGTD-----PKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred CCCCCCc----ceeeeEEECCEEEEEcCCcc-----ccccccccccccccc--ccceeeeeccc
Confidence 122221 44556655668888886541 111 45678888764 57899987777
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.67 E-value=0.0036 Score=57.70 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHhcCC-----cccceeeeccccchhhhhCChhHHHHHHh
Q 035860 42 MEFPSNIIYNILLRQP-----VKVLLRFRCVSKTWSNIIDSHSFAHAHVM 86 (440)
Q Consensus 42 ~~LP~Dll~eIL~RLP-----~~sL~R~r~VCK~W~~li~s~~F~~~~~~ 86 (440)
..||||+|.+||.++= ..+|-++.+|||.|+-...+|.|.+....
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 5799999999998864 58999999999999999999999876543
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.59 E-value=1.1 Score=41.17 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=55.4
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCC--------CCCEEEEeCCeEEEEEcCCCCCCCCC
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEP--------RSPSLINLRGNLALVTFPTDDYDGDT 337 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~--------~~~~L~~~~G~L~lv~~~~~~~~~~~ 337 (440)
.|..||.+|+-.... ..|+.||+.++.-. ...||....... ....+++-+..|-++.... .
T Consensus 74 ~vVYngslYY~~~~s----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~------~ 143 (250)
T PF02191_consen 74 HVVYNGSLYYNKYNS----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE------D 143 (250)
T ss_pred eEEECCcEEEEecCC----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC------C
Confidence 678899999998866 68999999999998 889998654311 4566777777888887765 2
Q ss_pred CccEEEEEEeec
Q 035860 338 EYIWIEIWVLKD 349 (440)
Q Consensus 338 ~~~~l~IW~l~~ 349 (440)
....|.|=.|+.
T Consensus 144 ~~g~ivvskld~ 155 (250)
T PF02191_consen 144 NNGNIVVSKLDP 155 (250)
T ss_pred CCCcEEEEeeCc
Confidence 234577777765
No 35
>smart00284 OLF Olfactomedin-like domains.
Probab=95.35 E-value=0.69 Score=42.42 Aligned_cols=74 Identities=19% Similarity=0.076 Sum_probs=55.3
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCC--------CCCCEEEEeCCeEEEEEcCCCCCCCCC
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNME--------PRSPSLINLRGNLALVTFPTDDYDGDT 337 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~--------~~~~~L~~~~G~L~lv~~~~~~~~~~~ 337 (440)
.|+.||.||+-.... ..|+.||+.++.... -.||...... ...+.|++-+..|-++.... .
T Consensus 79 ~VVYngslYY~~~~s----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~------~ 148 (255)
T smart00284 79 VVVYNGSLYFNKFNS----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE------Q 148 (255)
T ss_pred EEEECceEEEEecCC----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc------C
Confidence 789999999977665 589999999999964 4678532111 15578888888998888765 2
Q ss_pred CccEEEEEEeecc
Q 035860 338 EYIWIEIWVLKDH 350 (440)
Q Consensus 338 ~~~~l~IW~l~~~ 350 (440)
....|.|=.|+..
T Consensus 149 ~~g~ivvSkLnp~ 161 (255)
T smart00284 149 NAGKIVISKLNPA 161 (255)
T ss_pred CCCCEEEEeeCcc
Confidence 3477888888764
No 36
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.23 E-value=0.42 Score=39.20 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=57.7
Q ss_pred EEEEEEcCCc--cEEEeeCCCCCCCCC----------CCCEEEEeCCeEEEEEcCCCCCCC-CCCccEEEEEEeecc-CC
Q 035860 287 CIFSFDFNKE--EFKKIDLPIDCNMEP----------RSPSLINLRGNLALVTFPTDDYDG-DTEYIWIEIWVLKDH-YE 352 (440)
Q Consensus 287 ~Il~fD~~~e--~~~~i~lP~~~~~~~----------~~~~L~~~~G~L~lv~~~~~~~~~-~~~~~~l~IW~l~~~-g~ 352 (440)
+|+.+|+-.+ .++.|+||....... ....++..+|+|-+|......... ......+.+|.|... ++
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888998765 677889997653221 344677889999999876521110 024678999999884 23
Q ss_pred CcccceeEEeecCCCC
Q 035860 353 RNEWSKAYKISTDQDG 368 (440)
Q Consensus 353 ~~~W~~~~~i~~~~~~ 368 (440)
...|.+-+++....+.
T Consensus 87 ~~~W~~d~~v~~~diw 102 (131)
T PF07762_consen 87 SWEWKKDCEVDLSDIW 102 (131)
T ss_pred CCCEEEeEEEEhhhcc
Confidence 5789999999987654
No 37
>PF13964 Kelch_6: Kelch motif
Probab=93.03 E-value=0.22 Score=33.06 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=30.9
Q ss_pred cEEEcCeEEEEEecCCC-C-ceEEEEEEcCCccEEEe-eCC
Q 035860 267 GVSAYGDMHWISFDQNN-I-HTCIFSFDFNKEEFKKI-DLP 304 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~-~-~~~Il~fD~~~e~~~~i-~lP 304 (440)
.|.++|.||.+...... . ...+..||+++.+|..+ ++|
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 78899999999876652 1 36899999999999998 444
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.77 E-value=4.9 Score=41.47 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHH
Q 035860 42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHA 83 (440)
Q Consensus 42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~ 83 (440)
..||.++...||..|+.++|++++.||+.|+.++.+......
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 579999999999999999999999999999999998776654
No 39
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.05 E-value=4.9 Score=38.98 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=75.2
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe--ccc-cCC---cceEEEE--Ee
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY--PVI-ELS---DYKIAVY--TL 243 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~--~~~-~~~---~~~~~Vy--ss 243 (440)
...+|+++.|+....+|.+....... + .+.. .+ +|.++. ... ... ...+|++ +.
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk~~p------------i-sv~V---G~--~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPKRCP------------I-SVSV---GD--KLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCCcce------------E-EEEe---CC--eEEEeeccCccccccCccceeEEEecccc
Confidence 66899999999999999865432111 1 1111 12 244443 110 000 0144444 31
Q ss_pred ------C-CCCCcceeccCCcccCCC-----CCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEe---eCCCCCC
Q 035860 244 ------G-KDDSWRIISSSLALRPDV-----SYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKI---DLPIDCN 308 (440)
Q Consensus 244 ------~-~t~~W~~~~~~p~~~~~~-----~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i---~lP~~~~ 308 (440)
. .+-+|+.++.+|...... -...+|+ +|.--|+...+.. ..-.+||+++.+|+.. .||-.-.
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~--~GTysfDt~~~~W~~~GdW~LPF~G~ 224 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR--WGTYSFDTESHEWRKHGDWMLPFHGQ 224 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc--eEEEEEEcCCcceeeccceecCcCCc
Confidence 1 134688877766522111 1223666 8998999777611 2699999999999987 7785321
Q ss_pred CCC---CCCEEE--EeC--CeEEEEEcCC
Q 035860 309 MEP---RSPSLI--NLR--GNLALVTFPT 330 (440)
Q Consensus 309 ~~~---~~~~L~--~~~--G~L~lv~~~~ 330 (440)
... ....++ ..+ |.||.+....
T Consensus 225 a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 225 AEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred cEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 111 222233 333 3777776654
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=91.58 E-value=0.73 Score=29.87 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=31.3
Q ss_pred cEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCC
Q 035860 267 GVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLP 304 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP 304 (440)
.+.++|.+|-+....... ...+..||+.+.+|..+ ++|
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 788999999998766522 48999999999999988 444
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.62 E-value=9.8 Score=35.16 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=114.0
Q ss_pred cEEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCC------CcccccccccceEEEeeeCCCCCEEEE
Q 035860 152 PIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQH------DYYDAYRGLRGHFGMGYDSATGTYKIV 225 (440)
Q Consensus 152 ~i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~------~~~~~~~~~~~~~~~g~d~~~~~ykVv 225 (440)
.+.-+-+|-|-+.... ...+-=.||.|++....|...-..+... ..+ ..-.+....-+|+.+..++=+
T Consensus 66 dvapapdG~VWft~qg---~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~W---itd~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 66 DVAPAPDGAVWFTAQG---TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAW---ITDTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred ccccCCCCceEEecCc---cccceecCCCCCceEEEecCCCCCCceEEECCCCCee---EecCcceeEEecCcccceEEe
Confidence 4455667777665441 3456668999999999887655433320 000 000000011123333333322
Q ss_pred EEeccccCCcceEEEEEeCCCCCcceec-----cC-Cc-----cc--CCCCCcccEE--EcCeEEEEEecCCCCceEEEE
Q 035860 226 QSYPVIELSDYKIAVYTLGKDDSWRIIS-----SS-LA-----LR--PDVSYEFGVS--AYGDMHWISFDQNNIHTCIFS 290 (440)
Q Consensus 226 ~~~~~~~~~~~~~~Vyss~~t~~W~~~~-----~~-p~-----~~--~~~~~~~~v~--~~G~lywl~~~~~~~~~~Il~ 290 (440)
-+-.+-....+..-||+-. .+-|=+-. .+ |. .+ .......+++ -||.+|+....+ ..|..
T Consensus 140 ~lp~~~a~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiar 214 (353)
T COG4257 140 PLPLEHADANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIAR 214 (353)
T ss_pred ecccccCCCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEE
Confidence 2211223456777888888 77784322 11 11 01 1111112444 469999987776 68999
Q ss_pred EEcCCccEEEeeCCCCCCCCCCCCEEE-EeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCC
Q 035860 291 FDFNKEEFKKIDLPIDCNMEPRSPSLI-NLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGD 369 (440)
Q Consensus 291 fD~~~e~~~~i~lP~~~~~~~~~~~L~-~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~ 369 (440)
.|..+..-.+++.|....... ..+. ..-|++-.-..-. ..+ -..+- ...+|.. +.+|-..-.
T Consensus 215 idp~~~~aev~p~P~~~~~gs--Rriwsdpig~~wittwg~---------g~l--~rfdP--s~~sW~e-ypLPgs~ar- 277 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGS--RRIWSDPIGRAWITTWGT---------GSL--HRFDP--SVTSWIE-YPLPGSKAR- 277 (353)
T ss_pred cccccCCcceecCCCcccccc--cccccCccCcEEEeccCC---------cee--eEeCc--cccccee-eeCCCCCCC-
Confidence 999999888889998743211 1111 1112332221110 111 11111 1235655 344422211
Q ss_pred ccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE-EE
Q 035860 370 RIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL-RI 414 (440)
Q Consensus 370 ~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~-~~ 414 (440)
.+ .+ .+. +-+.|.+.....+.+.-||+++.+..+ ++
T Consensus 278 ------py-s~-rVD-~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 278 ------PY-SM-RVD-RHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ------cc-ee-eec-cCCcEEeeccccCceeecCcccceEEEecC
Confidence 00 11 222 334588877777788999999999876 54
No 42
>PF13964 Kelch_6: Kelch motif
Probab=89.98 E-value=0.97 Score=29.85 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=26.1
Q ss_pred eeeccEEEeeecCC---CcceeEEEEcccccccccCCCCCC
Q 035860 155 FVAYGFICFGESSC---HVKDHVHLWNPLRREVLRLPKLGY 192 (440)
Q Consensus 155 ~s~~GLlcl~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~ 192 (440)
.+.+|-|.+..... .....+.++||.|++|..+|+++.
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 44555554443321 235789999999999999998764
No 43
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=89.48 E-value=4.2 Score=39.55 Aligned_cols=118 Identities=13% Similarity=0.228 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCCcceeccCCcccCCCCCcccEEEc-CeEEEEEecCCCC------c-eEEEEEEcCCccEEEeeCCCCCC
Q 035860 237 KIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAY-GDMHWISFDQNNI------H-TCIFSFDFNKEEFKKIDLPIDCN 308 (440)
Q Consensus 237 ~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~-G~lywl~~~~~~~------~-~~Il~fD~~~e~~~~i~lP~~~~ 308 (440)
...+|+.. ++.|+.+.++....... +..+|.+- |.+|.....-... + --+..||+.+.+|..+.++.. .
T Consensus 99 dLy~Yn~k-~~eWkk~~spn~P~pRs-shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~-P 175 (521)
T KOG1230|consen 99 DLYSYNTK-KNEWKKVVSPNAPPPRS-SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG-P 175 (521)
T ss_pred eeeEEecc-ccceeEeccCCCcCCCc-cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC-C
Confidence 35789999 99999987432211111 12245444 6444443332211 1 468999999999999987762 2
Q ss_pred CCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEE
Q 035860 309 MEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYK 361 (440)
Q Consensus 309 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~ 361 (440)
.......++.+...|.++..-.+. ......-=+||+.+- +...|+++..
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~--nr~y~YyNDvy~FdL--dtykW~Klep 224 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDS--NRDYIYYNDVYAFDL--DTYKWSKLEP 224 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecC--CCceEEeeeeEEEec--cceeeeeccC
Confidence 222556788889999988854310 000111236777664 2568999865
No 44
>smart00612 Kelch Kelch domain.
Probab=85.91 E-value=1.5 Score=28.01 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.7
Q ss_pred cceEEEEEeCCCCCcceeccCCc
Q 035860 235 DYKIAVYTLGKDDSWRIISSSLA 257 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~~~p~ 257 (440)
...+++|+.. ++.|+.++.++.
T Consensus 14 ~~~v~~yd~~-~~~W~~~~~~~~ 35 (47)
T smart00612 14 LKSVEVYDPE-TNKWTPLPSMPT 35 (47)
T ss_pred eeeEEEECCC-CCeEccCCCCCC
Confidence 4568999999 999999887765
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.67 E-value=0.3 Score=47.36 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCCh
Q 035860 42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSH 78 (440)
Q Consensus 42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~ 78 (440)
-.||.|++..||+-|..++++|++.||+.|+-+..+.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 5799999999999999999999999999999987763
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=84.35 E-value=2.5 Score=27.72 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.0
Q ss_pred cEEEcCeEEEEEec--CCCC--ceEEEEEEcCCccEEEeeC
Q 035860 267 GVSAYGDMHWISFD--QNNI--HTCIFSFDFNKEEFKKIDL 303 (440)
Q Consensus 267 ~v~~~G~lywl~~~--~~~~--~~~Il~fD~~~e~~~~i~l 303 (440)
.+.++|.||.+... .... ...+..||+++.+|..++.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 67899999999776 2111 3689999999999998754
No 47
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.01 E-value=36 Score=31.52 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=83.8
Q ss_pred ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCc-cEEEeeCCCCCCC
Q 035860 231 IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKE-EFKKIDLPIDCNM 309 (440)
Q Consensus 231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e-~~~~i~lP~~~~~ 309 (440)
+.-+...+..|+.. ++.=.....+|... +. ..-..+|+.+|-++... ...+.||..+- .-..++.|.
T Consensus 63 G~yG~S~l~~~d~~-tg~~~~~~~l~~~~-Fg--EGit~~~d~l~qLTWk~----~~~f~yd~~tl~~~~~~~y~~---- 130 (264)
T PF05096_consen 63 GLYGQSSLRKVDLE-TGKVLQSVPLPPRY-FG--EGITILGDKLYQLTWKE----GTGFVYDPNTLKKIGTFPYPG---- 130 (264)
T ss_dssp CSTTEEEEEEEETT-TSSEEEEEE-TTT---E--EEEEEETTEEEEEESSS----SEEEEEETTTTEEEEEEE-SS----
T ss_pred CCCCcEEEEEEECC-CCcEEEEEECCccc-cc--eeEEEECCEEEEEEecC----CeEEEEccccceEEEEEecCC----
Confidence 44457788899999 88755444555422 11 22467899999999998 68999999852 333445553
Q ss_pred CCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860 310 EPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW 389 (440)
Q Consensus 310 ~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (440)
....|+.-+..|.|...+ =.|+.++. .......+|....--.. ...+.-...-++.
T Consensus 131 --EGWGLt~dg~~Li~SDGS------------~~L~~~dP----~~f~~~~~i~V~~~g~p------v~~LNELE~i~G~ 186 (264)
T PF05096_consen 131 --EGWGLTSDGKRLIMSDGS------------SRLYFLDP----ETFKEVRTIQVTDNGRP------VSNLNELEYINGK 186 (264)
T ss_dssp --S--EEEECSSCEEEE-SS------------SEEEEE-T----TT-SEEEEEE-EETTEE---------EEEEEEETTE
T ss_pred --cceEEEcCCCEEEEECCc------------cceEEECC----cccceEEEEEEEECCEE------CCCcEeEEEEcCE
Confidence 334566555566666543 34555653 24666677765422111 1122222222345
Q ss_pred EEEeecCCCceEEEECCCCcEE
Q 035860 390 MVLDTFRHDNKFVLDLENDDCH 411 (440)
Q Consensus 390 i~l~~~~~~~~~~yd~~~~~~~ 411 (440)
|+-+.+..+.++..|++|+++.
T Consensus 187 IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEE
Confidence 8888888889999999999964
No 48
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.71 E-value=28 Score=35.03 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=47.8
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCC--Cc
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDD--SW 249 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~--~W 249 (440)
.++.|+|-+|+||. +|....+.+.+ + +.+||.+|. -||++++---+-+.+.-+.|.+. .. .|
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPpg---c-------AA~GfvcdG----trilvFGGMvEYGkYsNdLYELQ-asRWeW 120 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPPG---C-------AAFGFVCDG----TRILVFGGMVEYGKYSNDLYELQ-ASRWEW 120 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCCc---h-------hhcceEecC----ceEEEEccEeeeccccchHHHhh-hhhhhH
Confidence 46899999999996 45444443333 1 233666664 36777641111234445666666 44 46
Q ss_pred ceec-c-----CCcccCCCCCcccEEEcCeEEEEEe
Q 035860 250 RIIS-S-----SLALRPDVSYEFGVSAYGDMHWISF 279 (440)
Q Consensus 250 ~~~~-~-----~p~~~~~~~~~~~v~~~G~lywl~~ 279 (440)
+++. . +|++.....+ =+.++...|.+..
T Consensus 121 krlkp~~p~nG~pPCPRlGHS--Fsl~gnKcYlFGG 154 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGHS--FSLVGNKCYLFGG 154 (830)
T ss_pred hhcCCCCCCCCCCCCCccCce--eEEeccEeEEecc
Confidence 6654 2 2222222221 2445667777654
No 49
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=82.12 E-value=31 Score=31.41 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=59.4
Q ss_pred CCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCC--------CCCEE
Q 035860 246 DDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEP--------RSPSL 316 (440)
Q Consensus 246 t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~--------~~~~L 316 (440)
.+.|...-.+|.... ...-|..||.+|+..... ..|+.||+.++.- ....+|....... ....+
T Consensus 55 ~~~~~~~~~lp~~~~---gTg~VVynGs~yynk~~t----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~ 127 (249)
T KOG3545|consen 55 RGRKAEKYRLPYSWD---GTGHVVYNGSLYYNKAGT----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDL 127 (249)
T ss_pred ccCcceEEeCCCCcc---ccceEEEcceEEeeccCC----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccc
Confidence 455666656665221 223789999999988666 6899999999543 4456676432211 45677
Q ss_pred EEeCCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860 317 INLRGNLALVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 317 ~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
++-+..|-++.... .....+.|=.|+.
T Consensus 128 avDE~GLWviYat~------~~~g~iv~skLdp 154 (249)
T KOG3545|consen 128 AVDENGLWVIYATP------ENAGTIVLSKLDP 154 (249)
T ss_pred eecccceeEEeccc------ccCCcEEeeccCH
Confidence 77777888777655 2445666677765
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=81.24 E-value=44 Score=32.38 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=61.2
Q ss_pred EEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCC-CCCccEEEEEEeec----cCCCcccceeEE
Q 035860 287 CIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDG-DTEYIWIEIWVLKD----HYERNEWSKAYK 361 (440)
Q Consensus 287 ~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~-~~~~~~l~IW~l~~----~g~~~~W~~~~~ 361 (440)
..+.||.++.... .+|. +.........+..+|+|+++......... +.....+++-.... ......|+=. .
T Consensus 87 ~t~vyDt~t~av~--~~P~-l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~-~ 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVA--TGPR-LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWR-S 162 (342)
T ss_pred CeEEEECCCCeEe--ccCC-CCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEE-c
Confidence 5888998888776 4444 22111334455568899988865310000 00001555544331 1123344432 2
Q ss_pred eecCCCCCccccccceeeEEEEEEcCcEEEEeecC-CCceEEEECCCCcEEE
Q 035860 362 ISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-HDNKFVLDLENDDCHL 412 (440)
Q Consensus 362 i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~~~~~yd~~~~~~~~ 412 (440)
+|.+++...........-...+. +|.-|++.... ..+.+.||.++.+|+.
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceee
Confidence 55544432211111101112232 68889996543 1368999999998864
No 51
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.24 E-value=59 Score=31.44 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=70.8
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCcc--EE---EeeCCCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEE
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEE--FK---KIDLPIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIE 343 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~--~~---~i~lP~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~ 343 (440)
+|...|.+..+. ..|..|++..+. +. .+.+|... ....++.. +|+ ++++... ...+.
T Consensus 154 dg~~v~v~dlG~---D~v~~~~~~~~~~~l~~~~~~~~~~G~----GPRh~~f~pdg~~~Yv~~e~---------s~~v~ 217 (345)
T PF10282_consen 154 DGRFVYVPDLGA---DRVYVYDIDDDTGKLTPVDSIKVPPGS----GPRHLAFSPDGKYAYVVNEL---------SNTVS 217 (345)
T ss_dssp TSSEEEEEETTT---TEEEEEEE-TTS-TEEEEEEEECSTTS----SEEEEEE-TTSSEEEEEETT---------TTEEE
T ss_pred CCCEEEEEecCC---CEEEEEEEeCCCceEEEeeccccccCC----CCcEEEEcCCcCEEEEecCC---------CCcEE
Confidence 466666665543 478888887665 53 34667643 22344444 454 5555533 37899
Q ss_pred EEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEEC--CCCcEEE
Q 035860 344 IWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDL--ENDDCHL 412 (440)
Q Consensus 344 IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~--~~~~~~~ 412 (440)
++.++.. +..++.+.+++...-. . .....-.-+ .+..+|+.+|+.....+.+.+|++ ++++...
T Consensus 218 v~~~~~~--~g~~~~~~~~~~~~~~-~-~~~~~~~~i-~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 218 VFDYDPS--DGSLTEIQTISTLPEG-F-TGENAPAEI-AISPDGRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp EEEEETT--TTEEEEEEEEESCETT-S-CSSSSEEEE-EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred EEeeccc--CCceeEEEEeeecccc-c-cccCCceeE-EEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 9988842 3478888888754321 1 111111122 344589999998777788999988 4455544
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=78.86 E-value=3.8 Score=26.74 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=21.2
Q ss_pred cEEE-cCeEEEEEecCCCC--ceEEEEEEcCCccEEEe
Q 035860 267 GVSA-YGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI 301 (440)
Q Consensus 267 ~v~~-~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i 301 (440)
.+.+ ++.+|-........ ...+..||+++.+|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4555 47777776544321 25789999999999988
No 53
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=78.58 E-value=2.8 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=24.4
Q ss_pred EEEEEe-cc-ccCCcceEEEEEeCCCCCcceeccCC
Q 035860 223 KIVQSY-PV-IELSDYKIAVYTLGKDDSWRIISSSL 256 (440)
Q Consensus 223 kVv~~~-~~-~~~~~~~~~Vyss~~t~~W~~~~~~p 256 (440)
+|+.++ .. .......+++|+.. ++.|+.++.+|
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~mp 47 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPE-TNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETT-TTEEEEEEEES
T ss_pred EEEEEeeecccCceeeeEEEEeCC-CCEEEEcCCCC
Confidence 466664 22 24567789999999 99999988765
No 54
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=76.04 E-value=86 Score=31.04 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=80.6
Q ss_pred CCCEEEEEEeccccCCcceEEEEEeCCCC-----CcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEc
Q 035860 219 TGTYKIVQSYPVIELSDYKIAVYTLGKDD-----SWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDF 293 (440)
Q Consensus 219 ~~~ykVv~~~~~~~~~~~~~~Vyss~~t~-----~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~ 293 (440)
.+.|-++..... .. ...+.+.+.. .+ .|+.+..--.. . ....-..++.+|.++..+... ..|++.|+
T Consensus 237 d~~~l~i~~~~~-~~-~s~v~~~d~~-~~~~~~~~~~~l~~~~~~--~--~~~v~~~~~~~yi~Tn~~a~~-~~l~~~~l 308 (414)
T PF02897_consen 237 DGRYLFISSSSG-TS-ESEVYLLDLD-DGGSPDAKPKLLSPREDG--V--EYYVDHHGDRLYILTNDDAPN-GRLVAVDL 308 (414)
T ss_dssp TSSEEEEEEESS-SS-EEEEEEEECC-CTTTSS-SEEEEEESSSS-----EEEEEEETTEEEEEE-TT-TT--EEEEEET
T ss_pred cccEEEEEEEcc-cc-CCeEEEEecc-ccCCCcCCcEEEeCCCCc--e--EEEEEccCCEEEEeeCCCCCC-cEEEEecc
Confidence 345655554311 11 3556666666 43 56665421110 0 001334578888888754443 79999999
Q ss_pred CCcc---EEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCc
Q 035860 294 NKEE---FKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDR 370 (440)
Q Consensus 294 ~~e~---~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~ 370 (440)
.+-. |..+-+|..-.. ....+...++.|.+....+ ....|.|+-++ ..|.. ..+++.....
T Consensus 309 ~~~~~~~~~~~l~~~~~~~--~l~~~~~~~~~Lvl~~~~~-------~~~~l~v~~~~-----~~~~~-~~~~~p~~g~- 372 (414)
T PF02897_consen 309 ADPSPAEWWTVLIPEDEDV--SLEDVSLFKDYLVLSYREN-------GSSRLRVYDLD-----DGKES-REIPLPEAGS- 372 (414)
T ss_dssp TSTSGGGEEEEEE--SSSE--EEEEEEEETTEEEEEEEET-------TEEEEEEEETT------TEEE-EEEESSSSSE-
T ss_pred cccccccceeEEcCCCCce--eEEEEEEECCEEEEEEEEC-------CccEEEEEECC-----CCcEE-eeecCCcceE-
Confidence 8765 664433432110 2234455678888888765 23445555444 12333 4555443211
Q ss_pred cccccceeeEEEEEEcCcEEEE--eecCC-CceEEEECCCCcEEE
Q 035860 371 IEEEDFFQYVCSIVVAGRWMVL--DTFRH-DNKFVLDLENDDCHL 412 (440)
Q Consensus 371 ~~~~~~~~~~~~~~~~g~~i~l--~~~~~-~~~~~yd~~~~~~~~ 412 (440)
...+ ....+++.+++ .+... ..++.||+.+++..+
T Consensus 373 ------v~~~-~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 373 ------VSGV-SGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp ------EEEE-ES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred ------Eecc-CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 0011 11124455655 33332 356899999999654
No 55
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.87 E-value=74 Score=30.27 Aligned_cols=140 Identities=10% Similarity=0.056 Sum_probs=71.0
Q ss_pred cceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcC-CccEEEee-CCCCCCC
Q 035860 235 DYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFN-KEEFKKID-LPIDCNM 309 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~-~e~~~~i~-lP~~~~~ 309 (440)
.-.+.+|+...++.++.+...+... .+ ..+.+ +|. ||...... ..|.+|++. ++.+..+. .|.. .
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~-~~---~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~~--~ 80 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPG-QV---QPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPLP--G 80 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCC-CC---ccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecCC--C
Confidence 3456777776135666555443210 11 12333 454 55544433 478888886 45565442 2221 1
Q ss_pred CCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcC
Q 035860 310 EPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAG 387 (440)
Q Consensus 310 ~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 387 (440)
....+... +|+ |++.... ...+.+|-+++.|. ....+..++... . ...+.+..+|
T Consensus 81 --~p~~i~~~~~g~~l~v~~~~---------~~~v~v~~~~~~g~--~~~~~~~~~~~~-------~---~~~~~~~p~g 137 (330)
T PRK11028 81 --SPTHISTDHQGRFLFSASYN---------ANCVSVSPLDKDGI--PVAPIQIIEGLE-------G---CHSANIDPDN 137 (330)
T ss_pred --CceEEEECCCCCEEEEEEcC---------CCeEEEEEECCCCC--CCCceeeccCCC-------c---ccEeEeCCCC
Confidence 22345444 465 4444433 37899999975432 222222222110 0 0112233467
Q ss_pred cEEEEeecCCCceEEEECCC
Q 035860 388 RWMVLDTFRHDNKFVLDLEN 407 (440)
Q Consensus 388 ~~i~l~~~~~~~~~~yd~~~ 407 (440)
+.+++.....+.+.+||+.+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CEEEEeeCCCCEEEEEEECC
Confidence 77777776667888888876
No 56
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=71.90 E-value=72 Score=30.70 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=67.8
Q ss_pred cEEEc--CeEEEEEecCCCCceEEEEEEcCCccEEEe---eCCCCCCC-CC---CCCEEEEe---CCeEEEEEcCCCCCC
Q 035860 267 GVSAY--GDMHWISFDQNNIHTCIFSFDFNKEEFKKI---DLPIDCNM-EP---RSPSLINL---RGNLALVTFPTDDYD 334 (440)
Q Consensus 267 ~v~~~--G~lywl~~~~~~~~~~Il~fD~~~e~~~~i---~lP~~~~~-~~---~~~~L~~~---~G~L~lv~~~~~~~~ 334 (440)
+++.+ |.+||++..+ .|...|++.+.-... .+-.+.+. .. ...++..+ .|+|+++.... -.
T Consensus 189 ~~~~~~~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g--~~ 261 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG--GE 261 (342)
T ss_dssp -EEETTTTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE----T
T ss_pred cceECCCCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC--CC
Confidence 55554 6799999888 899999998865433 22111110 11 34455555 36898776432 12
Q ss_pred CCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe-ecCCCceEEEECCCCcE
Q 035860 335 GDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD-TFRHDNKFVLDLENDDC 410 (440)
Q Consensus 335 ~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~~~~~~~yd~~~~~~ 410 (440)
.......-+||+++-. .=.++.+|++..-. ..+ .++.++.-+++. +.....+.+||..|++.
T Consensus 262 gsHKdpgteVWv~D~~----t~krv~Ri~l~~~~---------~Si-~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLK----THKRVARIPLEHPI---------DSI-AVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp T-TTS-EEEEEEEETT----TTEEEEEEEEEEEE---------SEE-EEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred CCccCCceEEEEEECC----CCeEEEEEeCCCcc---------ceE-EEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 2233467899999853 34567888864210 022 333455545543 33335789999999984
No 57
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=71.29 E-value=7.4 Score=25.43 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=31.0
Q ss_pred CEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEe
Q 035860 314 PSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKI 362 (440)
Q Consensus 314 ~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i 362 (440)
...++.+++|+++..... .......-++|+++-. +..|+.+..+
T Consensus 5 hs~~~~~~kiyv~GG~~~---~~~~~~~~~v~~~d~~--t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGT---DNGGSSSNDVWVFDTE--TNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCccc---CCCCcccceeEEEECC--CCEEeecCCC
Confidence 356778999999997710 1134567889999873 6789987554
No 58
>PLN02772 guanylate kinase
Probab=68.96 E-value=30 Score=34.06 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=50.5
Q ss_pred ccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe----eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCc
Q 035860 266 FGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI----DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEY 339 (440)
Q Consensus 266 ~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i----~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~ 339 (440)
..|.+++.+|.+....... ...+..||..+.+|..- ..|.... .+...+.-+++|.++..-. .
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~---GhSa~v~~~~rilv~~~~~--------~ 97 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK---GYSAVVLNKDRILVIKKGS--------A 97 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC---cceEEEECCceEEEEeCCC--------C
Confidence 3788999999888654432 25899999999999753 3344332 3444455568999888543 2
Q ss_pred cEEEEEEeec
Q 035860 340 IWIEIWVLKD 349 (440)
Q Consensus 340 ~~l~IW~l~~ 349 (440)
..=+||.|+-
T Consensus 98 ~~~~~w~l~~ 107 (398)
T PLN02772 98 PDDSIWFLEV 107 (398)
T ss_pred CccceEEEEc
Confidence 4578999974
No 59
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=68.78 E-value=4.9 Score=26.17 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=18.5
Q ss_pred EEEEEe-ccc-cCCcceEEEEEeCCCCCcceeccCC
Q 035860 223 KIVQSY-PVI-ELSDYKIAVYTLGKDDSWRIISSSL 256 (440)
Q Consensus 223 kVv~~~-~~~-~~~~~~~~Vyss~~t~~W~~~~~~p 256 (440)
+|+.++ ... ......+++|+.. +++|+.++.+|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~-~~~W~~~~~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIE-TNTWTRLPSMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETT-TTEEEE--SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECC-CCEEEECCCCC
Confidence 466654 222 2355678999999 99999997665
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=66.02 E-value=1.3e+02 Score=29.53 Aligned_cols=113 Identities=11% Similarity=0.071 Sum_probs=61.6
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCC------CCCCEEEEeCCeEEEEEcCCCCCCCCCCc
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNME------PRSPSLINLRGNLALVTFPTDDYDGDTEY 339 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~------~~~~~L~~~~G~L~lv~~~~~~~~~~~~~ 339 (440)
++..+|.+|.....+ .|.+||.++++-.. .+++...... .....++..+|++++....
T Consensus 65 Pvv~~~~vy~~~~~g-----~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~---------- 129 (394)
T PRK11138 65 PAVAYNKVYAADRAG-----LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK---------- 129 (394)
T ss_pred cEEECCEEEEECCCC-----eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC----------
Confidence 788999999887666 89999987654322 2333311000 0112355667787765422
Q ss_pred cEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE
Q 035860 340 IWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 340 ~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
. .+..++....+..|+... +-.. .-.++ + .++.|++.... ..+..+|.++++..|
T Consensus 130 g--~l~ald~~tG~~~W~~~~--~~~~---------~ssP~--v--~~~~v~v~~~~-g~l~ald~~tG~~~W 184 (394)
T PRK11138 130 G--QVYALNAEDGEVAWQTKV--AGEA---------LSRPV--V--SDGLVLVHTSN-GMLQALNESDGAVKW 184 (394)
T ss_pred C--EEEEEECCCCCCcccccC--CCce---------ecCCE--E--ECCEEEEECCC-CEEEEEEccCCCEee
Confidence 2 244555321256787642 1100 00121 1 34556665433 468999999998444
No 61
>smart00612 Kelch Kelch domain.
Probab=65.96 E-value=21 Score=22.29 Aligned_cols=20 Identities=10% Similarity=0.396 Sum_probs=15.9
Q ss_pred eEEEEEEcCCccEEEe-eCCC
Q 035860 286 TCIFSFDFNKEEFKKI-DLPI 305 (440)
Q Consensus 286 ~~Il~fD~~~e~~~~i-~lP~ 305 (440)
..+..||+.+.+|..+ ++|.
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeEEEECCCCCeEccCCCCCC
Confidence 4788999999999877 4444
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=63.87 E-value=1.1e+02 Score=27.25 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=91.1
Q ss_pred eccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcc
Q 035860 157 AYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDY 236 (440)
Q Consensus 157 ~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 236 (440)
.+|.+.+... ...++.+|+.||+...--..+... . . . ....+ =+|++... .-
T Consensus 35 ~~~~v~~~~~----~~~l~~~d~~tG~~~W~~~~~~~~--~---~--------~-~~~~~-----~~v~v~~~-----~~ 86 (238)
T PF13360_consen 35 DGGRVYVASG----DGNLYALDAKTGKVLWRFDLPGPI--S---G--------A-PVVDG-----GRVYVGTS-----DG 86 (238)
T ss_dssp ETTEEEEEET----TSEEEEEETTTSEEEEEEECSSCG--G---S--------G-EEEET-----TEEEEEET-----TS
T ss_pred eCCEEEEEcC----CCEEEEEECCCCCEEEEeeccccc--c---c--------e-eeecc-----cccccccc-----ee
Confidence 7888877755 588999999999854422211110 0 0 0 01111 12222220 11
Q ss_pred eEEEEEeCCCC--Ccce-eccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCC--
Q 035860 237 KIAVYTLGKDD--SWRI-ISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNME-- 310 (440)
Q Consensus 237 ~~~Vyss~~t~--~W~~-~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~-- 310 (440)
.+..++.. +| .|+. ....+........ .....++.+|...... .|.++|+.+++-. ..+++......
T Consensus 87 ~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-----~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 87 SLYALDAK-TGKVLWSIYLTSSPPAGVRSSS-SPAVDGDRLYVGTSSG-----KLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEEEETT-TSCEEEEEEE-SSCTCSTB--S-EEEEETTEEEEEETCS-----EEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eeEecccC-Ccceeeeecccccccccccccc-CceEecCEEEEEeccC-----cEEEEecCCCcEEEEeecCCCCCCcce
Confidence 56666655 55 5883 4332221111111 1333355566555444 8999998876552 22332211100
Q ss_pred ----CCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEc
Q 035860 311 ----PRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVA 386 (440)
Q Consensus 311 ----~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 386 (440)
.....++..+|.+++..... ..+.+ -++. | ...|++. +.. . ... ....
T Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~g---------~~~~~-d~~t-g-~~~w~~~--~~~--~----------~~~--~~~~ 211 (238)
T PF13360_consen 160 SSFSDINGSPVISDGRVYVSSGDG---------RVVAV-DLAT-G-EKLWSKP--ISG--I----------YSL--PSVD 211 (238)
T ss_dssp EEETTEEEEEECCTTEEEEECCTS---------SEEEE-ETTT-T-EEEEEEC--SS---E----------CEC--EECC
T ss_pred eeecccccceEEECCEEEEEcCCC---------eEEEE-ECCC-C-CEEEEec--CCC--c----------cCC--ceee
Confidence 01123444456555554332 22333 2222 1 2235221 111 0 011 1236
Q ss_pred CcEEEEeecCCCceEEEECCCCcEEE
Q 035860 387 GRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 387 g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
|+.|++.+ ....++.+|++|++..|
T Consensus 212 ~~~l~~~~-~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 212 GGTLYVTS-SDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CTEEEEEE-TTTEEEEEETTTTEEEE
T ss_pred CCEEEEEe-CCCEEEEEECCCCCEEe
Confidence 77788876 45789999999999554
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=62.68 E-value=1.3e+02 Score=29.17 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=56.2
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEE
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIW 345 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW 345 (440)
++..+|.+|.....+ .|.+||..+++-. ...++.... ...+..++.+++... + . .+.
T Consensus 61 p~v~~~~v~v~~~~g-----~v~a~d~~tG~~~W~~~~~~~~~-----~~p~v~~~~v~v~~~-~---------g--~l~ 118 (377)
T TIGR03300 61 PAVAGGKVYAADADG-----TVVALDAETGKRLWRVDLDERLS-----GGVGADGGLVFVGTE-K---------G--EVI 118 (377)
T ss_pred eEEECCEEEEECCCC-----eEEEEEccCCcEeeeecCCCCcc-----cceEEcCCEEEEEcC-C---------C--EEE
Confidence 677889999877665 7999998765432 335554322 123334555554332 1 2 234
Q ss_pred EeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE
Q 035860 346 VLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 346 ~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
.++-...+..|... ++... ...+ + ..++.+++... ...+..+|.++++..|
T Consensus 119 ald~~tG~~~W~~~--~~~~~---------~~~p---~-v~~~~v~v~~~-~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 119 ALDAEDGKELWRAK--LSSEV---------LSPP---L-VANGLVVVRTN-DGRLTALDAATGERLW 169 (377)
T ss_pred EEECCCCcEeeeec--cCcee---------ecCC---E-EECCEEEEECC-CCeEEEEEcCCCceee
Confidence 44421123467543 11000 0001 1 13445666433 3568889999887433
No 64
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=60.58 E-value=1.6e+02 Score=28.31 Aligned_cols=168 Identities=15% Similarity=0.194 Sum_probs=86.7
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCC--cceecc--CCcccCCCCCcccEEE-cCe-EEEEEecCCCCc
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDS--WRIISS--SLALRPDVSYEFGVSA-YGD-MHWISFDQNNIH 285 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~--W~~~~~--~p~~~~~~~~~~~v~~-~G~-lywl~~~~~~~~ 285 (440)
.+.++|. +.|-+|.- ...-.+.+|+.. .+. ...... .|. ..-++. .++. +|. +|.+....
T Consensus 148 ~v~~~pd-g~~v~v~d-----lG~D~v~~~~~~-~~~~~l~~~~~~~~~~-G~GPRh--~~f~pdg~~~Yv~~e~s---- 213 (345)
T PF10282_consen 148 QVVFSPD-GRFVYVPD-----LGADRVYVYDID-DDTGKLTPVDSIKVPP-GSGPRH--LAFSPDGKYAYVVNELS---- 213 (345)
T ss_dssp EEEE-TT-SSEEEEEE-----TTTTEEEEEEE--TTS-TEEEEEEEECST-TSSEEE--EEE-TTSSEEEEEETTT----
T ss_pred eEEECCC-CCEEEEEe-----cCCCEEEEEEEe-CCCceEEEeecccccc-CCCCcE--EEEcCCcCEEEEecCCC----
Confidence 6677774 44444332 235578899988 655 433221 121 011110 2222 455 55555444
Q ss_pred eEEEEEEcC--CccEEEe----eCCCCCCCCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccce
Q 035860 286 TCIFSFDFN--KEEFKKI----DLPIDCNMEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK 358 (440)
Q Consensus 286 ~~Il~fD~~--~e~~~~i----~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~ 358 (440)
..|.+|++. +..+..+ .+|...........|... +|+..++.... ...|.++.++.. .+.-+.
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--------~~sI~vf~~d~~--~g~l~~ 283 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--------SNSISVFDLDPA--TGTLTL 283 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT--------TTEEEEEEECTT--TTTEEE
T ss_pred CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc--------CCEEEEEEEecC--CCceEE
Confidence 467777766 6667654 345433221123344444 46544444332 488999999653 345566
Q ss_pred eEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEE--CCCCcEEE
Q 035860 359 AYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLD--LENDDCHL 412 (440)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd--~~~~~~~~ 412 (440)
+..++.... ..+.+ .+..+|+.+++....++.+.+|+ .+++.+..
T Consensus 284 ~~~~~~~G~--------~Pr~~-~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 284 VQTVPTGGK--------FPRHF-AFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEEEEESSS--------SEEEE-EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEEEeCCCC--------CccEE-EEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 666665321 11122 23458898988777777887774 56777543
No 65
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=60.57 E-value=13 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=18.5
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCC
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNK 295 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~ 295 (440)
+++.+|.+|..+.++ .|.+||.++
T Consensus 17 ~~v~~g~vyv~~~dg-----~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDG-----NLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTS-----EEEEEETT-
T ss_pred CEEECCEEEEEcCCC-----EEEEEeCCC
Confidence 678899999988877 899999875
No 66
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=59.50 E-value=31 Score=19.93 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=19.8
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccE
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF 298 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~ 298 (440)
.+..+|.+|....++ .|.++|.++++-
T Consensus 2 ~~~~~~~v~~~~~~g-----~l~a~d~~~G~~ 28 (33)
T smart00564 2 VVLSDGTVYVGSTDG-----TLYALDAKTGEI 28 (33)
T ss_pred cEEECCEEEEEcCCC-----EEEEEEcccCcE
Confidence 345677888876665 899999977654
No 67
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=58.62 E-value=1.5e+02 Score=27.19 Aligned_cols=152 Identities=12% Similarity=0.165 Sum_probs=77.2
Q ss_pred cceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCC----ccEEEeeCCCCCCCC
Q 035860 235 DYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNK----EEFKKIDLPIDCNME 310 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~----e~~~~i~lP~~~~~~ 310 (440)
.....+|+.. +++++.+.... ...|+...+.-||.+.-......+. ..|-.|+..+ ..|. +.|..+...
T Consensus 45 ~a~s~~yD~~-tn~~rpl~v~t---d~FCSgg~~L~dG~ll~tGG~~~G~-~~ir~~~p~~~~~~~~w~--e~~~~m~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPN-TNTFRPLTVQT---DTFCSGGAFLPDGRLLQTGGDNDGN-KAIRIFTPCTSDGTCDWT--ESPNDMQSG 117 (243)
T ss_pred eEEEEEEecC-CCcEEeccCCC---CCcccCcCCCCCCCEEEeCCCCccc-cceEEEecCCCCCCCCce--ECcccccCC
Confidence 3345677778 88887665321 2334444556677776444333222 4677788765 4564 344333333
Q ss_pred CCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860 311 PRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW 389 (440)
Q Consensus 311 ~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (440)
+.......+ +|++.++.... ....++|=-+..+ .....++............+|-++ .+..+|++
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~--------~~t~E~~P~~~~~-----~~~~~~~~l~~~~~~~~~nlYP~~-~llPdG~l 183 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSN--------NPTYEFWPPKGPG-----PGPVTLPFLSQTSDTLPNNLYPFV-HLLPDGNL 183 (243)
T ss_pred CccccceECCCCCEEEEeCcC--------CCcccccCCccCC-----CCceeeecchhhhccCccccCceE-EEcCCCCE
Confidence 356666666 58998888654 2445555332210 111122211110000111222233 23357874
Q ss_pred EEEeecCCCceEEEECCCCcE
Q 035860 390 MVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 390 i~l~~~~~~~~~~yd~~~~~~ 410 (440)
.++.. ++..+||.+++++
T Consensus 184 Fi~an---~~s~i~d~~~n~v 201 (243)
T PF07250_consen 184 FIFAN---RGSIIYDYKTNTV 201 (243)
T ss_pred EEEEc---CCcEEEeCCCCeE
Confidence 44432 3678899999985
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=57.11 E-value=22 Score=23.05 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=16.5
Q ss_pred eEEEEEEcCCccEEEe-eCCC
Q 035860 286 TCIFSFDFNKEEFKKI-DLPI 305 (440)
Q Consensus 286 ~~Il~fD~~~e~~~~i-~lP~ 305 (440)
..+.+||+.+.+|..+ ++|.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 5789999999999988 4444
No 69
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=56.46 E-value=1.5e+02 Score=29.44 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=76.3
Q ss_pred eeeccEEEeeecCCCcc-eeEEEEcccccccccCCCCCCCC---CCCCCcccccccccceEEEeeeCCCCCEEEEEEecc
Q 035860 155 FVAYGFICFGESSCHVK-DHVHLWNPLRREVLRLPKLGYYC---DYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPV 230 (440)
Q Consensus 155 ~s~~GLlcl~~~~~~~~-~~~~V~NP~T~~~~~LP~~~~~~---~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~ 230 (440)
+--+.||++.-....+. -+++|+|..|++..+|......+ |..+. . +|.=||-=.+++||++-...
T Consensus 235 A~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqG-i--------IFpgGYyLqtGe~K~Fd~~~- 304 (448)
T PF12458_consen 235 ARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQG-I--------IFPGGYYLQTGEYKTFDTDM- 304 (448)
T ss_pred eecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCc-e--------EccCceEeccCCceeecccC-
Confidence 44556677665433333 48999999999998887554321 11100 0 22334444567777654310
Q ss_pred ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCC
Q 035860 231 IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNME 310 (440)
Q Consensus 231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~ 310 (440)
..+.++ |.+.+ + . | ..+||-.-....+. +.++.||+-..+. .-|..+..
T Consensus 305 ---~~l~F~----------r~vrS-------P-N--G---EDvLYvF~~~~~g~-~~Ll~YN~I~k~v---~tPi~chG- 353 (448)
T PF12458_consen 305 ---DGLEFE----------RKVRS-------P-N--G---EDVLYVFYAREEGR-YLLLPYNLIRKEV---ATPIICHG- 353 (448)
T ss_pred ---CCceEE----------EEecC-------C-C--C---ceEEEEEEECCCCc-EEEEechhhhhhh---cCCeeccc-
Confidence 000000 00100 0 0 1 13566554444333 7889999876543 45554432
Q ss_pred CCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEee
Q 035860 311 PRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLK 348 (440)
Q Consensus 311 ~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~ 348 (440)
.-.--+|+|+++..... ......-|+||.--
T Consensus 354 ----~alf~DG~l~~fra~~~---EptrvHp~QiWqTP 384 (448)
T PF12458_consen 354 ----YALFEDGRLVYFRAEGD---EPTRVHPMQIWQTP 384 (448)
T ss_pred ----eeEecCCEEEEEecCCC---CcceeccceeecCC
Confidence 22234789999987631 12234568999853
No 70
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=55.06 E-value=1.6e+02 Score=26.37 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=62.5
Q ss_pred EEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCC--CEEEEe--CC--eEEEEEcCCCCCCCCCCccEE
Q 035860 269 SAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRS--PSLINL--RG--NLALVTFPTDDYDGDTEYIWI 342 (440)
Q Consensus 269 ~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~--~~L~~~--~G--~L~lv~~~~~~~~~~~~~~~l 342 (440)
.|||-+ ++.... .++..|+.|++|..+|.|+........ ..++-. .+ ++..+.... .......+
T Consensus 3 sCnGLl-c~~~~~-----~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~----~~~~~~~~ 72 (230)
T TIGR01640 3 PCDGLI-CFSYGK-----RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS----GNRNQSEH 72 (230)
T ss_pred ccceEE-EEecCC-----cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec----CCCCCccE
Confidence 478888 555433 799999999999999766531110011 122211 12 333332211 00123567
Q ss_pred EEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCC---C-ceEEEECCCCcEE
Q 035860 343 EIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRH---D-NKFVLDLENDDCH 411 (440)
Q Consensus 343 ~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~---~-~~~~yd~~~~~~~ 411 (440)
+|..+.. .+|..+...+. ... . . .. ++..+|.+-++..... . .++.||+.+++++
T Consensus 73 ~Vys~~~----~~Wr~~~~~~~-~~~---~-~---~~--~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~ 131 (230)
T TIGR01640 73 QVYTLGS----NSWRTIECSPP-HHP---L-K---SR--GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFK 131 (230)
T ss_pred EEEEeCC----CCccccccCCC-Ccc---c-c---CC--eEEECCEEEEEEEECCCCCcEEEEEEEcccceEe
Confidence 7777763 47998762221 110 0 0 11 2333676444543221 1 5899999999987
No 71
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.46 E-value=47 Score=31.94 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=72.4
Q ss_pred ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcC-eEEEEEecCCC----------------------------C--
Q 035860 236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYG-DMHWISFDQNN----------------------------I-- 284 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G-~lywl~~~~~~----------------------------~-- 284 (440)
..+..|+.. +++|..+....+....... ++..+| .+|+...-... .
T Consensus 113 nd~Y~y~p~-~nsW~kl~t~sP~gl~G~~--~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~ 189 (381)
T COG3055 113 NDAYRYDPS-TNSWHKLDTRSPTGLVGAS--TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA 189 (381)
T ss_pred eeeEEecCC-CChhheeccccccccccce--eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence 357889999 9999998854432222211 444455 66666532210 0
Q ss_pred -----ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeC-CeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccc
Q 035860 285 -----HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLR-GNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWS 357 (440)
Q Consensus 285 -----~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~-G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~ 357 (440)
...+++||..+++|+.. ..|--- ....-++.+ ++|.+|...-. +.-.+-.+|+.+-.++...|.
T Consensus 190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~----~aGsa~~~~~n~~~lInGEiK-----pGLRt~~~k~~~~~~~~~~w~ 260 (381)
T COG3055 190 EDYFFNKEVLSYDPSTNQWRNLGENPFYG----NAGSAVVIKGNKLTLINGEIK-----PGLRTAEVKQADFGGDNLKWL 260 (381)
T ss_pred HHhcccccccccccccchhhhcCcCcccC----ccCcceeecCCeEEEEcceec-----CCccccceeEEEeccCceeee
Confidence 25899999999999877 466522 122233334 46888875441 234566777766554567899
Q ss_pred eeEEeecCC
Q 035860 358 KAYKISTDQ 366 (440)
Q Consensus 358 ~~~~i~~~~ 366 (440)
++-.+|.+.
T Consensus 261 ~l~~lp~~~ 269 (381)
T COG3055 261 KLSDLPAPI 269 (381)
T ss_pred eccCCCCCC
Confidence 987776544
No 72
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=54.36 E-value=48 Score=30.82 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=72.3
Q ss_pred EEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeecc----
Q 035860 275 HWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDH---- 350 (440)
Q Consensus 275 ywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~---- 350 (440)
-|++... ..|..+|.++.++..++||-+....+...-+..-.|.|-+.....-.-+-+.....|+||---..
T Consensus 117 ~Witd~~----~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpy 192 (353)
T COG4257 117 AWITDTG----LAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPY 192 (353)
T ss_pred eeEecCc----ceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCc
Confidence 4666666 48999999999999999997654432333333345788888765422122455667888865321
Q ss_pred C-----CCcccce------eEEeecCCC-CCcccccc----ceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEE
Q 035860 351 Y-----ERNEWSK------AYKISTDQD-GDRIEEED----FFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCH 411 (440)
Q Consensus 351 g-----~~~~W~~------~~~i~~~~~-~~~~~~~~----~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~ 411 (440)
| +.+-|-- +.+|+.... .+.+...+ ..+-+ .....|. +..++.....+..||+.+.+|.
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRri-wsdpig~-~wittwg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRI-WSDPIGR-AWITTWGTGSLHRFDPSVTSWI 267 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccccccc-ccCccCc-EEEeccCCceeeEeCcccccce
Confidence 1 2345654 234432211 11111000 00001 1111333 6666666567899999999864
No 73
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=53.60 E-value=1.6e+02 Score=26.06 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=63.6
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEE
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIW 345 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW 345 (440)
.+.-+|.+|-..... .|.++|..+++-. ...+|.... .. ....+|.+++... + . .|+
T Consensus 32 ~~~~~~~v~~~~~~~-----~l~~~d~~tG~~~W~~~~~~~~~----~~-~~~~~~~v~v~~~-~---------~--~l~ 89 (238)
T PF13360_consen 32 AVPDGGRVYVASGDG-----NLYALDAKTGKVLWRFDLPGPIS----GA-PVVDGGRVYVGTS-D---------G--SLY 89 (238)
T ss_dssp EEEETTEEEEEETTS-----EEEEEETTTSEEEEEEECSSCGG----SG-EEEETTEEEEEET-T---------S--EEE
T ss_pred EEEeCCEEEEEcCCC-----EEEEEECCCCCEEEEeecccccc----ce-eeecccccccccc-e---------e--eeE
Confidence 344678888775444 8999998766543 345555332 12 4667788877762 1 3 667
Q ss_pred Eee-ccCCCcccce-eEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE
Q 035860 346 VLK-DHYERNEWSK-AYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 346 ~l~-~~g~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
.++ ..| +..|+. ...-+..... . ..... ..|+.+++... ...++.+|+++++..|
T Consensus 90 ~~d~~tG-~~~W~~~~~~~~~~~~~---~-----~~~~~--~~~~~~~~~~~-~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 90 ALDAKTG-KVLWSIYLTSSPPAGVR---S-----SSSPA--VDGDRLYVGTS-SGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEETTTS-CEEEEEEE-SSCTCSTB----------SEEE--EETTEEEEEET-CSEEEEEETTTTEEEE
T ss_pred ecccCCc-ceeeeeccccccccccc---c-----ccCce--EecCEEEEEec-cCcEEEEecCCCcEEE
Confidence 776 333 567874 3221211110 0 01112 24666666443 3589999999999544
No 74
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=53.58 E-value=41 Score=26.65 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=28.8
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
..+++.||.|+.| ||..... .+ +..+ .+-+++..+.|.|+...
T Consensus 9 A~Vm~~d~~tk~W--~P~~~~~--~~---------ls~V-~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKW--VPAGGGS--QG---------FSRV-QIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcE--EcCCCCC--CC---------cceE-EEEEcCCCCEEEEEEee
Confidence 5789999999985 4533211 00 0113 77788889999999864
No 75
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=52.58 E-value=31 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=28.9
Q ss_pred eeEEEEccccc-ccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRR-EVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
..+++++|.|+ .|. |..+.. ..+ .+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~~~--------------~~V-~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASKHA--------------VTV-SYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeE--eCCCCc--------------eeE-EEEecCCCcEEEEEEec
Confidence 67899999997 665 433221 124 78899999999999863
No 76
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=52.32 E-value=2.2e+02 Score=27.35 Aligned_cols=122 Identities=9% Similarity=0.156 Sum_probs=72.2
Q ss_pred eEEEEEecCCCCceEEEEEEcCC--ccEEEe-eCCCCCCCCCCCCEEEEeC-CeEEE-EEcCCCCCCCCCCccEEEEEEe
Q 035860 273 DMHWISFDQNNIHTCIFSFDFNK--EEFKKI-DLPIDCNMEPRSPSLINLR-GNLAL-VTFPTDDYDGDTEYIWIEIWVL 347 (440)
Q Consensus 273 ~lywl~~~~~~~~~~Il~fD~~~--e~~~~i-~lP~~~~~~~~~~~L~~~~-G~L~l-v~~~~~~~~~~~~~~~l~IW~l 347 (440)
.||-....+.. ..|.+|.+.. ++...+ ..+..-. ..+.+...+ |++.+ +.+.. ..+.|.-+
T Consensus 53 ~LY~v~~~~~~--ggvaay~iD~~~G~Lt~ln~~~~~g~---~p~yvsvd~~g~~vf~AnY~~---------g~v~v~p~ 118 (346)
T COG2706 53 HLYVVNEPGEE--GGVAAYRIDPDDGRLTFLNRQTLPGS---PPCYVSVDEDGRFVFVANYHS---------GSVSVYPL 118 (346)
T ss_pred EEEEEEecCCc--CcEEEEEEcCCCCeEEEeeccccCCC---CCeEEEECCCCCEEEEEEccC---------ceEEEEEc
Confidence 58877777443 4788887775 677766 2222111 225666665 54444 44433 78999999
Q ss_pred eccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 348 KDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 348 ~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
++.| .-|..+..+....--..-..+...........+|+.++......+++++|+++.+..
T Consensus 119 ~~dG--~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L 179 (346)
T COG2706 119 QADG--SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL 179 (346)
T ss_pred ccCC--ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcc
Confidence 8864 457776666543321111111111122234458888888777778999999997764
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=51.96 E-value=2.2e+02 Score=27.04 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=52.2
Q ss_pred eEEEEEEcCC-ccEEEee-CCCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEE
Q 035860 286 TCIFSFDFNK-EEFKKID-LPIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYK 361 (440)
Q Consensus 286 ~~Il~fD~~~-e~~~~i~-lP~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~ 361 (440)
..|-.||+.+ .++..+. ++.. . ....|... +|+ |++.... ...+.+|.+++ ++.++...+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~-~---~~~~l~~spd~~~lyv~~~~---------~~~i~~~~~~~---~g~l~~~~~ 75 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVP-G---QVQPMVISPDKRHLYVGVRP---------EFRVLSYRIAD---DGALTFAAE 75 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecC-C---CCccEEECCCCCEEEEEECC---------CCcEEEEEECC---CCceEEeee
Confidence 4788888864 4555442 2221 1 11223322 465 5554432 26788898874 245666666
Q ss_pred eecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCC
Q 035860 362 ISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLEN 407 (440)
Q Consensus 362 i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~ 407 (440)
++..... ..+ ....+|+.+|...+..+.+.+||+.+
T Consensus 76 ~~~~~~p---------~~i-~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 76 SPLPGSP---------THI-STDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred ecCCCCc---------eEE-EECCCCCEEEEEEcCCCeEEEEEECC
Confidence 6533110 122 22346777887766667788888864
No 78
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=47.45 E-value=4e+02 Score=29.08 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=23.4
Q ss_pred ccEEEcCeEEEEEecCCCCceEEEEEEcCC--ccEE
Q 035860 266 FGVSAYGDMHWISFDQNNIHTCIFSFDFNK--EEFK 299 (440)
Q Consensus 266 ~~v~~~G~lywl~~~~~~~~~~Il~fD~~~--e~~~ 299 (440)
.++.++|.+|..+..+ .|+++|..+ +.|+
T Consensus 189 TPlvvgg~lYv~t~~~-----~V~ALDa~TGk~lW~ 219 (764)
T TIGR03074 189 TPLKVGDTLYLCTPHN-----KVIALDAATGKEKWK 219 (764)
T ss_pred CCEEECCEEEEECCCC-----eEEEEECCCCcEEEE
Confidence 3899999999987765 899999875 4555
No 79
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=47.42 E-value=3.4e+02 Score=28.06 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=61.1
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCc--cEEEe-eCCCCCCCC----CCCCEEEEeCCeEEEEEcCCCCCCCCCCc
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKE--EFKKI-DLPIDCNME----PRSPSLINLRGNLALVTFPTDDYDGDTEY 339 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e--~~~~i-~lP~~~~~~----~~~~~L~~~~G~L~lv~~~~~~~~~~~~~ 339 (440)
++..+|.+|..+... .|.++|..++ .|+.- ..|...... .....+...+|++++....
T Consensus 65 Pvv~~g~vyv~s~~g-----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d---------- 129 (527)
T TIGR03075 65 PLVVDGVMYVTTSYS-----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD---------- 129 (527)
T ss_pred CEEECCEEEEECCCC-----cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC----------
Confidence 788999999876655 7999998864 55432 333221100 0111234556776654432
Q ss_pred cEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEEEECCCCcEEE
Q 035860 340 IWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFVLDLENDDCHL 412 (440)
Q Consensus 340 ~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~yd~~~~~~~~ 412 (440)
=.|..|+....+..|..... ....... ..-.++ + .++.|++.... ...+..||.+|++..|
T Consensus 130 --g~l~ALDa~TGk~~W~~~~~-~~~~~~~-----~tssP~--v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 130 --ARLVALDAKTGKVVWSKKNG-DYKAGYT-----ITAAPL--V--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred --CEEEEEECCCCCEEeecccc-ccccccc-----ccCCcE--E--ECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 14666665323556775421 1110000 000122 1 23456664321 2467899999999433
No 80
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=47.37 E-value=2.7e+02 Score=26.83 Aligned_cols=110 Identities=14% Similarity=0.243 Sum_probs=62.8
Q ss_pred eEEEEEEcCCccEEEe---eCCCCCCCCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEE
Q 035860 286 TCIFSFDFNKEEFKKI---DLPIDCNMEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYK 361 (440)
Q Consensus 286 ~~Il~fD~~~e~~~~i---~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~ 361 (440)
+.|..||++.+..... .+++.. +...|+-. +|+++.+...- +.++.+|..+.. .++-..+.+
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~----GPRHi~FHpn~k~aY~v~EL--------~stV~v~~y~~~--~g~~~~lQ~ 232 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGA----GPRHIVFHPNGKYAYLVNEL--------NSTVDVLEYNPA--VGKFEELQT 232 (346)
T ss_pred ceEEEEEcccCccccccccccCCCC----CcceEEEcCCCcEEEEEecc--------CCEEEEEEEcCC--CceEEEeee
Confidence 4677777775555322 334432 23344433 57887776542 589999999874 356666666
Q ss_pred eecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCce--EEEECCCCcEEE
Q 035860 362 ISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNK--FVLDLENDDCHL 412 (440)
Q Consensus 362 i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~--~~yd~~~~~~~~ 412 (440)
|+..+- .+....+-..+ .++.+|..+|..+...+.+ |-.|..+++..+
T Consensus 233 i~tlP~--dF~g~~~~aaI-his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 233 IDTLPE--DFTGTNWAAAI-HISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL 282 (346)
T ss_pred eccCcc--ccCCCCceeEE-EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence 664322 12222222333 3446899888876666666 445666666444
No 81
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=44.28 E-value=1.2e+02 Score=31.00 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=63.5
Q ss_pred eeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860 156 VAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD 235 (440)
Q Consensus 156 s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 235 (440)
..+|-+++++.. ..++.||||.-++.+.+ ..-.. ...+|..-|.|.+++-.|+.- ...
T Consensus 59 n~dG~lL~SGSD---D~r~ivWd~~~~Kllhs--I~TgH------------taNIFsvKFvP~tnnriv~sg-----AgD 116 (758)
T KOG1310|consen 59 NADGELLASGSD---DTRLIVWDPFEYKLLHS--ISTGH------------TANIFSVKFVPYTNNRIVLSG-----AGD 116 (758)
T ss_pred cCCCCEEeecCC---cceEEeecchhcceeee--eeccc------------ccceeEEeeeccCCCeEEEec-----cCc
Confidence 467777777663 67899999995543332 21110 012557778888877655543 346
Q ss_pred ceEEEEEeCCCCCcceecc-CCc-ccCCCC-----CcccEEEcC-eEEEEEecCCCCceEEEEEEcCC
Q 035860 236 YKIAVYTLGKDDSWRIISS-SLA-LRPDVS-----YEFGVSAYG-DMHWISFDQNNIHTCIFSFDFNK 295 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~-~p~-~~~~~~-----~~~~v~~~G-~lywl~~~~~~~~~~Il~fD~~~ 295 (440)
..+.+|++. .-+=+.... +-. ...+.| ..-++.=+| ..+|.+.++ ..|.-||+..
T Consensus 117 k~i~lfdl~-~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED----GtirQyDiRE 179 (758)
T KOG1310|consen 117 KLIKLFDLD-SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED----GTIRQYDIRE 179 (758)
T ss_pred ceEEEEecc-cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC----cceeeecccC
Confidence 778899887 422222211 100 000000 111233345 688998888 6888899875
No 82
>PRK04792 tolB translocation protein TolB; Provisional
Probab=41.27 E-value=3.9e+02 Score=26.91 Aligned_cols=140 Identities=10% Similarity=0.060 Sum_probs=72.0
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...++++|..|++...|...+.. .....+.|.. ++ ++.... ......+.+++.. ++..+
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~----------------~~~~~wSPDG-~~-La~~~~--~~g~~~Iy~~dl~-tg~~~ 299 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI----------------NGAPRFSPDG-KK-LALVLS--KDGQPEIYVVDIA-TKALT 299 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC----------------cCCeeECCCC-CE-EEEEEe--CCCCeEEEEEECC-CCCeE
Confidence 35799999999887665432211 0133445432 22 322221 1234567778888 88777
Q ss_pred eeccCCcccCCCCCcccEEEcCe-EEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCC-eEEEEEc
Q 035860 251 IISSSLALRPDVSYEFGVSAYGD-MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRG-NLALVTF 328 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G-~L~lv~~ 328 (440)
.+...... . ......-+|. +++....... ..|..+|+.+.+...+....... ..... .-+| .|++...
T Consensus 300 ~lt~~~~~---~-~~p~wSpDG~~I~f~s~~~g~--~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~~-SpDG~~l~~~~~ 369 (448)
T PRK04792 300 RITRHRAI---D-TEPSWHPDGKSLIFTSERGGK--PQIYRVNLASGKVSRLTFEGEQN---LGGSI-TPDGRSMIMVNR 369 (448)
T ss_pred ECccCCCC---c-cceEECCCCCEEEEEECCCCC--ceEEEEECCCCCEEEEecCCCCC---cCeeE-CCCCCEEEEEEe
Confidence 66532210 0 0011222454 5555433222 57999999988887764322111 11222 2255 5555543
Q ss_pred CCCCCCCCCCccEEEEEEeecc
Q 035860 329 PTDDYDGDTEYIWIEIWVLKDH 350 (440)
Q Consensus 329 ~~~~~~~~~~~~~l~IW~l~~~ 350 (440)
.. ...+||+++-.
T Consensus 370 ~~---------g~~~I~~~dl~ 382 (448)
T PRK04792 370 TN---------GKFNIARQDLE 382 (448)
T ss_pred cC---------CceEEEEEECC
Confidence 22 46789998753
No 83
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=39.27 E-value=1.8e+02 Score=27.32 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.6
Q ss_pred cEEEEeecCCCceEEEECCCCc-EEE
Q 035860 388 RWMVLDTFRHDNKFVLDLENDD-CHL 412 (440)
Q Consensus 388 ~~i~l~~~~~~~~~~yd~~~~~-~~~ 412 (440)
..+|++......+++||+.+++ |++
T Consensus 78 ~~aYItD~~~~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLATGKSWRV 103 (287)
T ss_dssp EEEEEEETTTCEEEEEETTTTEEEEE
T ss_pred eEEEEeCCCcCcEEEEEccCCcEEEE
Confidence 5788887776799999999998 655
No 84
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=38.49 E-value=1.5e+02 Score=28.37 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=41.5
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCC
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPT 330 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~ 330 (440)
+-+.+|.||.+.... ..|..+|.+++++..+ .+|.... .|+-. |.|.+|..+.
T Consensus 208 PRWhdgrLwvldsgt----Gev~~vD~~~G~~e~Va~vpG~~r------GL~f~-G~llvVgmSk 261 (335)
T TIGR03032 208 PRWYQGKLWLLNSGR----GELGYVDPQAGKFQPVAFLPGFTR------GLAFA-GDFAFVGLSK 261 (335)
T ss_pred CcEeCCeEEEEECCC----CEEEEEcCCCCcEEEEEECCCCCc------cccee-CCEEEEEecc
Confidence 778899999988776 6899999999999877 7776321 23433 9999999876
No 85
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=38.04 E-value=3e+02 Score=24.72 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=100.5
Q ss_pred eeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860 156 VAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD 235 (440)
Q Consensus 156 s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 235 (440)
..+|-|.+.+.. ...++.++|.+++...+..+. . . |+.++...+. ++... .
T Consensus 9 ~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------------~-G~~~~~~~g~--l~v~~------~ 59 (246)
T PF08450_consen 9 PRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------------N-GMAFDRPDGR--LYVAD------S 59 (246)
T ss_dssp TTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------------E-EEEEECTTSE--EEEEE------T
T ss_pred CCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------------c-eEEEEccCCE--EEEEE------c
Confidence 335656555531 578999999999876544322 1 2 6677733332 33322 2
Q ss_pred ceEEEEEeCCCCCcceeccCCcc--cCCCCCcccEEEcCeEEEEEecCCCC--c--eEEEEEEcCCccEEEe----eCCC
Q 035860 236 YKIAVYTLGKDDSWRIISSSLAL--RPDVSYEFGVSAYGDMHWISFDQNNI--H--TCIFSFDFNKEEFKKI----DLPI 305 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~~p~~--~~~~~~~~~v~~~G~lywl~~~~~~~--~--~~Il~fD~~~e~~~~i----~lP~ 305 (440)
....+++.. ++.++.+...+.. .......-.+--+|.+|+-....... . ..|..+|.. ++...+ ..|.
T Consensus 60 ~~~~~~d~~-~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN 137 (246)
T PF08450_consen 60 GGIAVVDPD-TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN 137 (246)
T ss_dssp TCEEEEETT-TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE
T ss_pred CceEEEecC-CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc
Confidence 344666888 8888877654311 11111111233468877766544321 1 479999999 555443 2222
Q ss_pred CCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEe-ecCCCCCccccccceeeEEE
Q 035860 306 DCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKI-STDQDGDRIEEEDFFQYVCS 382 (440)
Q Consensus 306 ~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~ 382 (440)
.|+.. +|+ |++..... .. ||.++-......+.....+ .+....+ ...-++
T Consensus 138 ---------Gi~~s~dg~~lyv~ds~~---------~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g------~pDG~~- 190 (246)
T PF08450_consen 138 ---------GIAFSPDGKTLYVADSFN---------GR--IWRFDLDADGGELSNRRVFIDFPGGPG------YPDGLA- 190 (246)
T ss_dssp ---------EEEEETTSSEEEEEETTT---------TE--EEEEEEETTTCCEEEEEEEEE-SSSSC------EEEEEE-
T ss_pred ---------ceEECCcchheeeccccc---------ce--eEEEeccccccceeeeeeEEEcCCCCc------CCCcce-
Confidence 23333 454 55555432 33 6666543223345544433 3322211 112233
Q ss_pred EEEcCcEEEEeecCCCceEEEECCCCc
Q 035860 383 IVVAGRWMVLDTFRHDNKFVLDLENDD 409 (440)
Q Consensus 383 ~~~~g~~i~l~~~~~~~~~~yd~~~~~ 409 (440)
+..+|+ |++..+...++..||++ ++
T Consensus 191 vD~~G~-l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 191 VDSDGN-LWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EBTTS--EEEEEETTTEEEEEETT-SC
T ss_pred EcCCCC-EEEEEcCCCEEEEECCC-cc
Confidence 223554 88877777899999999 55
No 86
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.52 E-value=1.7e+02 Score=28.40 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=53.6
Q ss_pred CCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC------ceEEEEEEcCCccEEEe--eCCCCCCCCCCCCEEE
Q 035860 246 DDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI------HTCIFSFDFNKEEFKKI--DLPIDCNMEPRSPSLI 317 (440)
Q Consensus 246 t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~------~~~Il~fD~~~e~~~~i--~lP~~~~~~~~~~~L~ 317 (440)
...|+.+...|-....... .+.++|.||.....+... -..+..||..+.+|..+ ..|... ....-.
T Consensus 69 ~k~W~~~a~FpG~~rnqa~--~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl----~G~~~~ 142 (381)
T COG3055 69 GKGWTKIADFPGGARNQAV--AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGL----VGASTF 142 (381)
T ss_pred CCCceEcccCCCcccccch--heeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccccccc----ccceeE
Confidence 4579999988763333322 789999999987654322 26788999999999987 556653 233444
Q ss_pred EeCC-eEEEEEcCC
Q 035860 318 NLRG-NLALVTFPT 330 (440)
Q Consensus 318 ~~~G-~L~lv~~~~ 330 (440)
.+++ .+.+.....
T Consensus 143 ~~~~~~i~f~GGvn 156 (381)
T COG3055 143 SLNGTKIYFFGGVN 156 (381)
T ss_pred ecCCceEEEEcccc
Confidence 5555 777776544
No 87
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=35.93 E-value=4e+02 Score=25.50 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=53.0
Q ss_pred cEEE-cCeEEEEEecCCCC---ceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccE
Q 035860 267 GVSA-YGDMHWISFDQNNI---HTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIW 341 (440)
Q Consensus 267 ~v~~-~G~lywl~~~~~~~---~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~ 341 (440)
++.. +|.+.+........ ...++..|-..++|+....+.. ........++++ +|+|.++.... ....
T Consensus 151 gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~-~~~~~e~~i~el~dG~l~~~~R~~-------~~~~ 222 (351)
T cd00260 151 GIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVND-AGGCSECSVVELSDGKLYMYTRDN-------SGGR 222 (351)
T ss_pred eEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCC-CCCCcCCEEEEecCCEEEEEEeeC-------CCCc
Confidence 5666 48888776543321 2455556666789986544432 011156789999 78998877653 1244
Q ss_pred EEEEEeeccCCCcccceeEEee
Q 035860 342 IEIWVLKDHYERNEWSKAYKIS 363 (440)
Q Consensus 342 l~IW~l~~~g~~~~W~~~~~i~ 363 (440)
..+..-.|. ..+|+......
T Consensus 223 ~~~~~S~D~--G~tWs~~~~~~ 242 (351)
T cd00260 223 RPVYESRDM--GTTWTEALGTL 242 (351)
T ss_pred EEEEEEcCC--CcCcccCcCCc
Confidence 555555554 46899976554
No 88
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=35.54 E-value=4.7e+02 Score=26.26 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=26.8
Q ss_pred EEcCe-EEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCC
Q 035860 269 SAYGD-MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCN 308 (440)
Q Consensus 269 ~~~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~ 308 (440)
+-+|. .-+.+.+. .++.+||+.+.+...+..|....
T Consensus 266 ~p~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 266 APNGHSVIFTSGRR----KYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred cCCCceEEEecccc----eEEEEeeccccccccccCCCCcc
Confidence 33565 44554454 68999999999999998887665
No 89
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=34.98 E-value=25 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHhcCC--------cccceeeeccccchhhhhCC
Q 035860 41 SMEFPSNIIYNILLRQP--------VKVLLRFRCVSKTWSNIIDS 77 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP--------~~sL~R~r~VCK~W~~li~s 77 (440)
+..||.++|.+|+.|+- -++.+-+..||+.|+.+..+
T Consensus 45 ~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 45 WAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 36899999999999985 23688999999999997664
No 90
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.93 E-value=65 Score=19.61 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=19.4
Q ss_pred cCcEEEEeecCCCceEEEECCCCcE
Q 035860 386 AGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 386 ~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
+|+.+|+.....+.+.++|..+++.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeE
Confidence 4667888777778889999988774
No 91
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=33.84 E-value=4.6e+02 Score=25.57 Aligned_cols=120 Identities=11% Similarity=0.150 Sum_probs=68.4
Q ss_pred EEcCeEEEEEecCCCCceEEEEEEcCCc------cEEEeeCCCCCCCC-CCCCEEEEeC---CeEEEEEcCC-CCCCCCC
Q 035860 269 SAYGDMHWISFDQNNIHTCIFSFDFNKE------EFKKIDLPIDCNME-PRSPSLINLR---GNLALVTFPT-DDYDGDT 337 (440)
Q Consensus 269 ~~~G~lywl~~~~~~~~~~Il~fD~~~e------~~~~i~lP~~~~~~-~~~~~L~~~~---G~L~lv~~~~-~~~~~~~ 337 (440)
-.+|..+|.+.++ .|...|+++. .|..+..-...... ....+.+.+. ++|++..... ++.| .
T Consensus 203 ~~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th--k 275 (352)
T TIGR02658 203 NKSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH--K 275 (352)
T ss_pred cCCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc--c
Confidence 3479999999996 8999997543 23333111000000 1232334442 4666644211 0111 1
Q ss_pred CccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc-EEEEeecCCCceEEEECCCCcE
Q 035860 338 EYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR-WMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 338 ~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
...=+||+++- .++..+.+|+...... .+ .+..+|+ .+|..+...+.+.++|..+.+.
T Consensus 276 -~~~~~V~ViD~----~t~kvi~~i~vG~~~~---------~i-avS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 276 -TASRFLFVVDA----KTGKRLRKIELGHEID---------SI-NVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred -CCCCEEEEEEC----CCCeEEEEEeCCCcee---------eE-EECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 12238999974 5799999999764211 12 2345777 6676665567799999999984
No 92
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=32.46 E-value=4.9e+02 Score=25.47 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=31.4
Q ss_pred eEEEEEeCCCC--CcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccE
Q 035860 237 KIAVYTLGKDD--SWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF 298 (440)
Q Consensus 237 ~~~Vyss~~t~--~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~ 298 (440)
.+..++.. +| .|+.-..-+. ...++..+|.+|..+..+ .|.+||.++++-
T Consensus 131 ~l~ald~~-tG~~~W~~~~~~~~------~ssP~v~~~~v~v~~~~g-----~l~ald~~tG~~ 182 (394)
T PRK11138 131 QVYALNAE-DGEVAWQTKVAGEA------LSRPVVSDGLVLVHTSNG-----MLQALNESDGAV 182 (394)
T ss_pred EEEEEECC-CCCCcccccCCCce------ecCCEEECCEEEEECCCC-----EEEEEEccCCCE
Confidence 45556655 44 6875432111 122677899999765554 899999987654
No 93
>PF13013 F-box-like_2: F-box-like domain
Probab=31.39 E-value=17 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHHhcCCcccceeeecccc
Q 035860 41 SMEFPSNIIYNILLRQPVKVLLRFRCVSK 69 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP~~sL~R~r~VCK 69 (440)
..+||+||+..|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 47899999999999998887765555555
No 94
>PRK00178 tolB translocation protein TolB; Provisional
Probab=31.33 E-value=5.3e+02 Score=25.53 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=71.1
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...++++|..|++.+.|...... .....+.|. +++-++.... .....+.+++.. ++..+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~----------------~~~~~~SpD-G~~la~~~~~---~g~~~Iy~~d~~-~~~~~ 280 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL----------------NGAPAWSPD-GSKLAFVLSK---DGNPEIYVMDLA-SRQLS 280 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC----------------cCCeEECCC-CCEEEEEEcc---CCCceEEEEECC-CCCeE
Confidence 35799999999987776533211 012334442 2322222221 223567788888 88877
Q ss_pred eeccCCcccCCCCCcccEEEcCe-EEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCC-eEEEEEc
Q 035860 251 IISSSLALRPDVSYEFGVSAYGD-MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRG-NLALVTF 328 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G-~L~lv~~ 328 (440)
.+...+.. . ......-+|. +++....... ..|..+|+.+.+...+....... ....+. -+| .|++...
T Consensus 281 ~lt~~~~~---~-~~~~~spDg~~i~f~s~~~g~--~~iy~~d~~~g~~~~lt~~~~~~---~~~~~S-pdg~~i~~~~~ 350 (430)
T PRK00178 281 RVTNHPAI---D-TEPFWGKDGRTLYFTSDRGGK--PQIYKVNVNGGRAERVTFVGNYN---ARPRLS-ADGKTLVMVHR 350 (430)
T ss_pred EcccCCCC---c-CCeEECCCCCEEEEEECCCCC--ceEEEEECCCCCEEEeecCCCCc---cceEEC-CCCCEEEEEEc
Confidence 65432211 0 0011122454 6666543322 47888999888877664322110 112222 245 5555553
Q ss_pred CCCCCCCCCCccEEEEEEeec
Q 035860 329 PTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 329 ~~~~~~~~~~~~~l~IW~l~~ 349 (440)
.. ...+||+++-
T Consensus 351 ~~---------~~~~l~~~dl 362 (430)
T PRK00178 351 QD---------GNFHVAAQDL 362 (430)
T ss_pred cC---------CceEEEEEEC
Confidence 32 3566777764
No 95
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.99 E-value=4.4e+02 Score=24.50 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=66.8
Q ss_pred cEEE--cCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEE
Q 035860 267 GVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIE 343 (440)
Q Consensus 267 ~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~ 343 (440)
|..+ +|.||=-+.... +..|..+|+.+++.. ..++|+... .-.++..+++|+.+...+ ...-
T Consensus 49 GL~~~~~g~LyESTG~yG--~S~l~~~d~~tg~~~~~~~l~~~~F----gEGit~~~d~l~qLTWk~---------~~~f 113 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG--QSSLRKVDLETGKVLQSVPLPPRYF----GEGITILGDKLYQLTWKE---------GTGF 113 (264)
T ss_dssp EEEEEETTEEEEEECSTT--EEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESSS---------SEEE
T ss_pred cEEecCCCEEEEeCCCCC--cEEEEEEECCCCcEEEEEECCcccc----ceeEEEECCEEEEEEecC---------CeEE
Confidence 5543 567776554432 368999999998874 679998653 335788899999999875 4444
Q ss_pred EEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCc
Q 035860 344 IWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDD 409 (440)
Q Consensus 344 IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~ 409 (440)
++-.+ ...++.+++... +.| .+| .+|+.++.++. ++++...|+++-+
T Consensus 114 ~yd~~------tl~~~~~~~y~~-------EGW--GLt---~dg~~Li~SDG-S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPN------TLKKIGTFPYPG-------EGW--GLT---SDGKRLIMSDG-SSRLYFLDPETFK 160 (264)
T ss_dssp EEETT------TTEEEEEEE-SS-------S----EEE---ECSSCEEEE-S-SSEEEEE-TTT-S
T ss_pred EEccc------cceEEEEEecCC-------cce--EEE---cCCCEEEEECC-ccceEEECCcccc
Confidence 44332 466677776541 122 233 46776666544 5788999998776
No 96
>PRK05137 tolB translocation protein TolB; Provisional
Probab=29.28 E-value=5.8e+02 Score=25.38 Aligned_cols=186 Identities=13% Similarity=0.094 Sum_probs=88.9
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...++++|+.|++.+.|...+.. ..+..+.|. ++.-++... ......+.+++.. ++.-+
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~----------------~~~~~~SPD-G~~la~~~~---~~g~~~Iy~~d~~-~~~~~ 283 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM----------------TFAPRFSPD-GRKVVMSLS---QGGNTDIYTMDLR-SGTTT 283 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc----------------ccCcEECCC-CCEEEEEEe---cCCCceEEEEECC-CCceE
Confidence 36899999999987766432211 113334443 222222221 1224556677887 77665
Q ss_pred eeccCCcccCCCCCcccEEEcCe-EEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCC-eEEEEEc
Q 035860 251 IISSSLALRPDVSYEFGVSAYGD-MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRG-NLALVTF 328 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G-~L~lv~~ 328 (440)
.+...+.. . ......-+|. +++....... ..|..+|+.++....+....... ..+.. .-+| .|+++..
T Consensus 284 ~Lt~~~~~---~-~~~~~spDG~~i~f~s~~~g~--~~Iy~~d~~g~~~~~lt~~~~~~---~~~~~-SpdG~~ia~~~~ 353 (435)
T PRK05137 284 RLTDSPAI---D-TSPSYSPDGSQIVFESDRSGS--PQLYVMNADGSNPRRISFGGGRY---STPVW-SPRGDLIAFTKQ 353 (435)
T ss_pred EccCCCCc---c-CceeEcCCCCEEEEEECCCCC--CeEEEEECCCCCeEEeecCCCcc---cCeEE-CCCCCEEEEEEc
Confidence 55432221 0 0012222454 5544432211 47888899888777664321110 12222 2245 5655554
Q ss_pred CCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCC-----CceEEE
Q 035860 329 PTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRH-----DNKFVL 403 (440)
Q Consensus 329 ~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~-----~~~~~y 403 (440)
.. ....||+++-.+. ..+. +.... . . . .+ ....+|+.|++..... ..++.+
T Consensus 354 ~~---------~~~~i~~~d~~~~---~~~~--lt~~~---~-~-~---~p--~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 354 GG---------GQFSIGVMKPDGS---GERI--LTSGF---L-V-E---GP--TWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred CC---------CceEEEEEECCCC---ceEe--ccCCC---C-C-C---CC--eECCCCCEEEEEEccCCCCCcceEEEE
Confidence 32 3467777764321 2221 11110 0 0 1 11 1234788777744321 357888
Q ss_pred ECCCCcEE
Q 035860 404 DLENDDCH 411 (440)
Q Consensus 404 d~~~~~~~ 411 (440)
|+..+...
T Consensus 410 dl~g~~~~ 417 (435)
T PRK05137 410 DLTGRNER 417 (435)
T ss_pred ECCCCceE
Confidence 98876643
No 97
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=28.60 E-value=5.5e+02 Score=24.86 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=64.9
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCcc--EEEeeCC-CCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEE
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEE--FKKIDLP-IDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIE 343 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~--~~~i~lP-~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~ 343 (440)
.++.+|.+|....++ .|.+||.++.. |+.-... ... ....++..+|+|++-... . .
T Consensus 64 ~~~~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~~~~~~----~~~~~~~~~G~i~~g~~~----------g--~ 122 (370)
T COG1520 64 PADGDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLLGAVAQ----LSGPILGSDGKIYVGSWD----------G--K 122 (370)
T ss_pred cEeeCCeEEEecCCC-----cEEEEeCCCCcEEecccCcCccee----ccCceEEeCCeEEEeccc----------c--e
Confidence 489999999986666 79999999876 6544332 011 122233337885554431 2 7
Q ss_pred EEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE
Q 035860 344 IWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 344 IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
++.|++......|...... . . .........+..|++.+ ....+...|..+++..|
T Consensus 123 ~y~ld~~~G~~~W~~~~~~--~----~-------~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W 177 (370)
T COG1520 123 LYALDASTGTLVWSRNVGG--S----P-------YYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKW 177 (370)
T ss_pred EEEEECCCCcEEEEEecCC--C----e-------EEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEE
Confidence 8888873224567765333 0 0 01111112445577754 33678888999888544
No 98
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=27.26 E-value=1.2e+02 Score=18.33 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=16.6
Q ss_pred EEEEeecCCCceEEEECCCCcEEE
Q 035860 389 WMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 389 ~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
.|++.+. ...++.+|.+|++..|
T Consensus 2 ~v~~~~~-~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTP-DGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETT-TSEEEEEETTTTSEEE
T ss_pred EEEEeCC-CCEEEEEECCCCCEEE
Confidence 4666533 3578999999999555
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=27.13 E-value=4.7e+02 Score=23.60 Aligned_cols=186 Identities=12% Similarity=0.041 Sum_probs=84.7
Q ss_pred ceeEEEEccccccccc-CCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCc
Q 035860 171 KDHVHLWNPLRREVLR-LPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W 249 (440)
...+.+||+.+++... ++..... . .+.+++..+ +++... ...-.+.+|+.. ++.
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~~----------------~-~~~~~~~g~--~l~~~~----~~~~~l~~~d~~-~~~- 106 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPDP----------------E-LFALHPNGK--ILYIAN----EDDNLVTVIDIE-TRK- 106 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCCc----------------c-EEEECCCCC--EEEEEc----CCCCeEEEEECC-CCe-
Confidence 3678999999887543 4321110 1 445665433 232221 112368888887 643
Q ss_pred ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCCCCCCEEE-EeCCeEEEEE
Q 035860 250 RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNMEPRSPSLI-NLRGNLALVT 327 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~~~~~~L~-~~~G~L~lv~ 327 (440)
.+...+.. ... ....+.-+|.+.+.+.... ..+..+|+.+.+... +..+. ....+. .-+|+..++.
T Consensus 107 -~~~~~~~~-~~~-~~~~~~~dg~~l~~~~~~~---~~~~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 107 -VLAEIPVG-VEP-EGMAVSPDGKIVVNTSETT---NMAHFIDTKTYEIVDNVLVDQ------RPRFAEFTADGKELWVS 174 (300)
T ss_pred -EEeEeeCC-CCc-ceEEECCCCCEEEEEecCC---CeEEEEeCCCCeEEEEEEcCC------CccEEEECCCCCEEEEE
Confidence 12111110 001 1001223566655554431 246667887655432 22211 111222 2246544444
Q ss_pred cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeE-EEEEEcCcEEEEeecCCCceEEEECC
Q 035860 328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYV-CSIVVAGRWMVLDTFRHDNKFVLDLE 406 (440)
Q Consensus 328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~l~~~~~~~~~~yd~~ 406 (440)
... ...+.+|-++.. ....++....- .... .. ..+. .....+|+.+++.....+.+.+||++
T Consensus 175 ~~~--------~~~v~i~d~~~~------~~~~~~~~~~~-~~~~-~~-~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 175 SEI--------GGTVSVIDVATR------KVIKKITFEIP-GVHP-EA-VQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred cCC--------CCEEEEEEcCcc------eeeeeeeeccc-cccc-cc-CCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 322 267999987642 22233332110 0000 00 0111 12234677666654444678899998
Q ss_pred CCcE
Q 035860 407 NDDC 410 (440)
Q Consensus 407 ~~~~ 410 (440)
+.+.
T Consensus 238 ~~~~ 241 (300)
T TIGR03866 238 TYEV 241 (300)
T ss_pred CCcE
Confidence 8774
No 100
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.24 E-value=6.2e+02 Score=24.67 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=60.9
Q ss_pred EEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEeCC-eEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeec
Q 035860 287 CIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINLRG-NLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIST 364 (440)
Q Consensus 287 ~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G-~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~ 364 (440)
.|..+|..+.+. ..|+.-. . ... +..-+| .|+++.....+--.......++||=.+ +...+.+|++
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~--~---P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~------t~~~~~~i~~ 95 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGF--L---PNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ------THLPIADIEL 95 (352)
T ss_pred eEEEEECCCCEEEEEEEccC--C---Cce-eECCCCCEEEEEeccccccccCCCCCEEEEEECc------cCcEEeEEcc
Confidence 699999988665 3454321 1 111 333345 566665421100001123667777554 4567778887
Q ss_pred CCCCCccccccceeeEEEEEEcCcEEEEeecC-CCceEEEECCCCcE
Q 035860 365 DQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-HDNKFVLDLENDDC 410 (440)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~~~~~yd~~~~~~ 410 (440)
..-+.+.-.. ......+..+|+.+|+.+.. .+.+-++|+++++.
T Consensus 96 p~~p~~~~~~--~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 96 PEGPRFLVGT--YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred CCCchhhccC--ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 5443221100 01122444588889986655 67889999999984
No 101
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=25.36 E-value=1.6e+02 Score=23.13 Aligned_cols=39 Identities=15% Similarity=0.016 Sum_probs=28.3
Q ss_pred eeEEEEcccccc-cccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRRE-VLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
-.++..+|.+++ |... .. .+...+..|...+.|.|+...
T Consensus 16 A~v~~~~p~~~~~W~~~----~~--------------~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV----KG--------------TGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES----SS--------------EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC----Ce--------------EEEEEEEEECCCCEEEEEEEE
Confidence 578999998888 8765 11 123378889888899888764
No 102
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=22.92 E-value=54 Score=30.25 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHHhcCC-cccceeeeccccchhhhhCC
Q 035860 41 SMEFPSNIIYNILLRQP-VKVLLRFRCVSKTWSNIIDS 77 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP-~~sL~R~r~VCK~W~~li~s 77 (440)
..+||.+++.+||.||| -.+|.-...|--.-..++++
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 46899999999999999 78888777775444444443
No 103
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=22.19 E-value=4.4e+02 Score=25.12 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=50.4
Q ss_pred CcceeccCCcc------cCCCCCcccEEE-cCeEEEEEec--CCCC-ceEEEEEEcC-CccEEEe-eC-CCCCCCCCCCC
Q 035860 248 SWRIISSSLAL------RPDVSYEFGVSA-YGDMHWISFD--QNNI-HTCIFSFDFN-KEEFKKI-DL-PIDCNMEPRSP 314 (440)
Q Consensus 248 ~W~~~~~~p~~------~~~~~~~~~v~~-~G~lywl~~~--~~~~-~~~Il~fD~~-~e~~~~i-~l-P~~~~~~~~~~ 314 (440)
.|.....++.. ..+.....||.. ||.|-+-..- ..+. ...++.|-.. ...|..- .. |..| ..+
T Consensus 101 ~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC----~~p 176 (310)
T PF13859_consen 101 KWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGC----SDP 176 (310)
T ss_dssp EE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT-----EEE
T ss_pred eeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCCc----ceE
Confidence 58776655431 122223346666 7888877543 2222 2677788766 6778643 23 3333 678
Q ss_pred EEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCccccee-EEee
Q 035860 315 SLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKA-YKIS 363 (440)
Q Consensus 315 ~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~-~~i~ 363 (440)
.++|. +|+|.|+...+ ...-.|.+-.|-| .+|+.. -+++
T Consensus 177 sv~EWe~gkLlM~~~c~--------~g~rrVYeS~DmG--~tWtea~gtls 217 (310)
T PF13859_consen 177 SVVEWEDGKLLMMTACD--------DGRRRVYESGDMG--TTWTEALGTLS 217 (310)
T ss_dssp EEEEE-TTEEEEEEE-T--------TS---EEEESSTT--SS-EE-TTTTT
T ss_pred EEEeccCCeeEEEEecc--------cceEEEEEEcccc--eehhhccCccc
Confidence 99999 79999999865 1345666666654 579973 3444
No 104
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=21.48 E-value=7.4e+02 Score=23.87 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=29.8
Q ss_pred eEEEEEeCCCC--CcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccE
Q 035860 237 KIAVYTLGKDD--SWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF 298 (440)
Q Consensus 237 ~~~Vyss~~t~--~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~ 298 (440)
.+..++.. +| .|+....-+. ...++..+|.+|.....+ .|.++|..+++.
T Consensus 116 ~l~ald~~-tG~~~W~~~~~~~~------~~~p~v~~~~v~v~~~~g-----~l~a~d~~tG~~ 167 (377)
T TIGR03300 116 EVIALDAE-DGKELWRAKLSSEV------LSPPLVANGLVVVRTNDG-----RLTALDAATGER 167 (377)
T ss_pred EEEEEECC-CCcEeeeeccCcee------ecCCEEECCEEEEECCCC-----eEEEEEcCCCce
Confidence 45556655 44 5864422111 122566788888765544 799999976543
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=20.80 E-value=1.1e+03 Score=25.51 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=15.0
Q ss_pred ceeEEEEccccccccc-CCCCC
Q 035860 171 KDHVHLWNPLRREVLR-LPKLG 191 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~-LP~~~ 191 (440)
.+.+-++||.|=++.. ||.+.
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~h 300 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSH 300 (1080)
T ss_pred cceeeecCcchhhhcccccccc
Confidence 3567889999988654 66553
No 106
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=20.74 E-value=3.4e+02 Score=21.00 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=29.2
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
.++++.+|.+++|...- . + .+...+..|+..+.|.|+...
T Consensus 9 a~v~~~~~~~~~W~~~~----~---~----------~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 9 AQVYTADPSTGKWVPAS----G---G----------TGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EEEEEECCCCCceEECC----C---C----------eEEEEEEEECCCCEEEEEEEe
Confidence 67899999999998532 1 0 123488899988999888764
No 107
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=20.25 E-value=6.6e+02 Score=22.80 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=65.3
Q ss_pred ceEEE-EEeCCCCCcceeccCCcccCCCCCcccEE--EcCeEEEEEecCCCCceEEEEEEcC-CccEEEe---eCCCCCC
Q 035860 236 YKIAV-YTLGKDDSWRIISSSLALRPDVSYEFGVS--AYGDMHWISFDQNNIHTCIFSFDFN-KEEFKKI---DLPIDCN 308 (440)
Q Consensus 236 ~~~~V-yss~~t~~W~~~~~~p~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~Il~fD~~-~e~~~~i---~lP~~~~ 308 (440)
....+ |+..+...|......+..... ..+.+. -+|.+|.+.... ......++.-.. .++|+.. .+|...
T Consensus 133 ~~~~~~~S~D~G~tW~~~~~~~~~~~~--~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~- 208 (275)
T PF13088_consen 133 FSAFVYYSDDGGKTWSSGSPIPDGQGE--CEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPN- 208 (275)
T ss_dssp EEEEEEEESSTTSSEEEEEECECSEEE--EEEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCC-
T ss_pred cceEEEEeCCCCceeeccccccccCCc--ceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCccc-
Confidence 44444 444423469887655321000 111222 478999888774 211344444443 4688754 555532
Q ss_pred CCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCC
Q 035860 309 MEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQ 366 (440)
Q Consensus 309 ~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~ 366 (440)
....++.+ +|+|.++.... .....+.|++-++. ...|.....|....
T Consensus 209 ---~~~~~~~~~~g~~~~~~~~~------~~r~~l~l~~S~D~--g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 209 ---SSISLVRLSDGRLLLVYNNP------DGRSNLSLYVSEDG--GKTWSRPKTIDDGP 256 (275)
T ss_dssp ---EEEEEEECTTSEEEEEEECS------STSEEEEEEEECTT--CEEEEEEEEEEEEE
T ss_pred ---CCceEEEcCCCCEEEEEECC------CCCCceEEEEEeCC--CCcCCccEEEeCCC
Confidence 34455565 47888888742 12467889887775 46899998887654
Done!