Query 035860
Match_columns 440
No_of_seqs 227 out of 1706
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 99.2 4E-09 1.4E-13 99.2 21.5 215 153-412 50-277 (306)
2 1zgk_A Kelch-like ECH-associat 99.2 7.3E-09 2.5E-13 97.7 23.3 215 153-412 65-292 (308)
3 2vpj_A Kelch-like protein 12; 99.1 9.6E-09 3.3E-13 96.3 23.5 214 153-412 57-283 (301)
4 2xn4_A Kelch-like protein 2; s 99.1 1.1E-08 3.8E-13 96.0 23.6 214 154-412 57-281 (302)
5 2woz_A Kelch repeat and BTB do 99.1 2.1E-08 7.2E-13 94.9 22.8 195 173-412 79-292 (318)
6 4asc_A Kelch repeat and BTB do 99.1 2.1E-08 7.2E-13 94.8 21.7 196 172-412 67-282 (315)
7 2vpj_A Kelch-like protein 12; 99.0 5.6E-08 1.9E-12 91.1 23.2 196 171-412 30-236 (301)
8 2xn4_A Kelch-like protein 2; s 99.0 8.4E-08 2.9E-12 89.9 24.0 199 171-412 29-234 (302)
9 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 8.9E-11 3E-15 79.7 2.3 42 41-82 9-50 (53)
10 3ii7_A Kelch-like protein 7; p 99.0 4.8E-08 1.7E-12 91.8 21.7 200 171-412 23-230 (306)
11 2e31_A FBS1, F-box only protei 99.0 1.2E-10 4E-15 107.5 3.3 48 41-88 51-99 (297)
12 1zgk_A Kelch-like ECH-associat 99.0 5.1E-08 1.7E-12 91.8 20.9 196 171-412 38-245 (308)
13 2uvk_A YJHT; unknown function, 98.9 1.3E-07 4.4E-12 90.9 21.0 180 153-363 14-238 (357)
14 4asc_A Kelch repeat and BTB do 98.9 3.9E-07 1.3E-11 85.9 21.9 198 172-412 13-226 (315)
15 2woz_A Kelch repeat and BTB do 98.7 3.5E-07 1.2E-11 86.4 17.4 207 158-412 15-236 (318)
16 2ovr_B FBW7, F-BOX/WD repeat p 98.6 1.9E-05 6.5E-10 77.8 27.2 46 41-86 19-64 (445)
17 1p22_A F-BOX/WD-repeat protein 98.6 2.8E-06 9.7E-11 83.6 19.9 46 42-87 12-61 (435)
18 2uvk_A YJHT; unknown function, 98.6 4.7E-06 1.6E-10 79.9 20.4 225 152-412 59-347 (357)
19 3v7d_B Cell division control p 98.5 3.1E-05 1.1E-09 76.5 23.2 43 42-84 16-59 (464)
20 2zwa_A Leucine carboxyl methyl 98.4 1.3E-05 4.6E-10 84.0 21.1 219 157-412 396-640 (695)
21 1k3i_A Galactose oxidase precu 97.7 0.0017 5.6E-08 67.6 18.4 226 154-412 249-502 (656)
22 3l2o_B F-box only protein 4; s 97.7 1.6E-05 5.3E-10 72.6 2.5 49 42-90 6-54 (312)
23 1k3i_A Galactose oxidase precu 97.6 0.00032 1.1E-08 73.0 12.4 203 174-412 168-383 (656)
24 2ast_B S-phase kinase-associat 97.3 5.3E-05 1.8E-09 71.7 1.4 42 39-80 7-48 (336)
25 2zwa_A Leucine carboxyl methyl 97.3 0.0038 1.3E-07 65.3 15.5 175 152-357 443-639 (695)
26 2p1m_B Transport inhibitor res 96.3 0.00077 2.6E-08 68.9 0.5 34 41-74 6-40 (594)
27 3ogk_B Coronatine-insensitive 96.0 0.0014 4.6E-08 67.1 0.5 34 41-74 13-47 (592)
28 3mbr_X Glutamine cyclotransfer 91.8 6.5 0.00022 34.8 18.8 157 212-411 25-183 (243)
29 3nol_A Glutamine cyclotransfer 89.2 12 0.0004 33.5 15.7 140 234-411 63-205 (262)
30 3nok_A Glutaminyl cyclase; bet 89.1 12 0.0004 33.6 14.4 135 238-411 77-214 (268)
31 3hfq_A Uncharacterized protein 88.7 8.1 0.00028 35.3 14.0 122 271-411 50-176 (347)
32 4gga_A P55CDC, cell division c 87.2 20 0.00069 33.8 18.2 147 156-349 114-261 (420)
33 1l0q_A Surface layer protein; 87.1 15 0.00051 34.0 15.0 176 171-410 11-192 (391)
34 3mbr_X Glutamine cyclotransfer 85.0 20 0.00067 31.6 16.5 110 267-410 25-136 (243)
35 3jro_A Fusion protein of prote 83.0 46 0.0016 34.4 17.9 127 210-363 56-201 (753)
36 3nol_A Glutamine cyclotransfer 83.0 25 0.00086 31.3 14.8 108 269-410 50-158 (262)
37 3u4y_A Uncharacterized protein 82.9 26 0.00088 31.4 16.9 195 157-410 8-210 (331)
38 1l0q_A Surface layer protein; 81.7 32 0.0011 31.6 16.4 180 171-411 95-279 (391)
39 3jrp_A Fusion protein of prote 80.2 34 0.0012 31.0 19.6 126 211-363 59-203 (379)
40 1yfq_A Cell cycle arrest prote 79.0 35 0.0012 30.5 21.4 194 171-410 78-285 (342)
41 3q7m_A Lipoprotein YFGL, BAMB; 77.1 36 0.0012 31.4 13.3 113 267-412 49-167 (376)
42 3ei3_B DNA damage-binding prot 76.9 45 0.0015 30.6 20.0 186 171-409 95-284 (383)
43 3nok_A Glutaminyl cyclase; bet 74.6 47 0.0016 29.6 13.3 107 267-410 59-167 (268)
44 3sjl_D Methylamine dehydrogena 73.1 29 0.001 32.9 11.3 118 271-410 237-366 (386)
45 1ri6_A Putative isomerase YBHE 73.1 50 0.0017 29.3 18.4 148 235-411 150-314 (343)
46 3g4e_A Regucalcin; six bladed 72.8 51 0.0017 29.2 17.3 197 158-410 24-232 (297)
47 3q7m_A Lipoprotein YFGL, BAMB; 70.5 65 0.0022 29.5 15.7 50 236-297 113-164 (376)
48 3bws_A Protein LP49; two-domai 70.5 69 0.0024 29.8 17.5 192 156-410 178-393 (433)
49 3vgz_A Uncharacterized protein 70.4 60 0.002 29.0 22.0 206 155-410 97-306 (353)
50 4ggc_A P55CDC, cell division c 67.0 65 0.0022 28.2 17.6 67 156-248 34-100 (318)
51 2iwa_A Glutamine cyclotransfer 66.1 72 0.0025 28.3 19.8 158 212-410 25-184 (266)
52 2ojh_A Uncharacterized protein 66.0 63 0.0022 27.6 12.1 105 171-302 21-126 (297)
53 4e54_B DNA damage-binding prot 65.7 70 0.0024 30.1 12.6 136 171-349 141-282 (435)
54 2iwa_A Glutamine cyclotransfer 65.2 75 0.0026 28.2 15.7 111 267-410 25-138 (266)
55 1p22_A F-BOX/WD-repeat protein 62.2 1E+02 0.0035 28.8 20.1 132 171-349 192-325 (435)
56 3bws_A Protein LP49; two-domai 60.9 65 0.0022 30.0 11.3 112 271-410 133-246 (433)
57 3dsm_A Uncharacterized protein 58.9 1E+02 0.0035 27.7 23.9 199 158-411 2-216 (328)
58 3p5b_L Low density lipoprotein 57.6 1.2E+02 0.0041 28.5 12.5 72 212-296 250-321 (400)
59 3no2_A Uncharacterized protein 57.6 1E+02 0.0034 27.2 14.8 114 268-412 84-200 (276)
60 4aez_A CDC20, WD repeat-contai 57.2 1.2E+02 0.0041 28.0 19.8 135 172-349 113-248 (401)
61 2aq5_A Coronin-1A; WD40 repeat 57.0 1.2E+02 0.0041 27.9 21.8 194 171-409 103-301 (402)
62 3scy_A Hypothetical bacterial 57.0 1.1E+02 0.0038 27.5 14.3 117 271-412 221-344 (361)
63 3m0c_C LDL receptor, low-densi 55.4 2E+02 0.0069 30.0 15.4 100 212-329 518-621 (791)
64 1q7f_A NHL, brain tumor CG1071 55.0 1E+02 0.0036 26.6 14.5 149 155-349 128-280 (286)
65 3dsm_A Uncharacterized protein 54.9 1.2E+02 0.0041 27.3 16.4 144 235-412 16-166 (328)
66 2hqs_A Protein TOLB; TOLB, PAL 53.3 1.5E+02 0.005 27.8 16.7 183 172-411 159-348 (415)
67 4gqb_B Methylosome protein 50; 51.3 1.4E+02 0.0049 27.1 15.0 196 156-410 91-292 (344)
68 1kb0_A Quinohemoprotein alcoho 49.9 1E+02 0.0035 31.4 11.2 119 267-412 73-204 (677)
69 3dwl_C Actin-related protein 2 48.7 99 0.0034 28.0 10.2 137 171-348 32-176 (377)
70 1ri6_A Putative isomerase YBHE 48.2 1.4E+02 0.0049 26.2 18.0 103 286-406 151-261 (343)
71 1rwi_B Serine/threonine-protei 45.9 1.4E+02 0.0047 25.3 17.7 192 153-409 72-266 (270)
72 2bkl_A Prolyl endopeptidase; m 45.8 2.5E+02 0.0086 28.3 18.0 144 171-349 201-349 (695)
73 1evh_A WH1 domain, protein (ME 45.4 31 0.0011 26.2 4.8 42 172-228 11-52 (112)
74 1k8k_C P40, ARP2/3 complex 41 45.3 1.7E+02 0.0057 26.1 17.6 136 171-348 29-172 (372)
75 2mad_H Methylamine dehydrogena 44.9 1.9E+02 0.0065 26.7 12.1 56 342-411 298-354 (373)
76 2ad6_A Methanol dehydrogenase 44.8 2.4E+02 0.0083 27.9 13.0 118 267-412 58-190 (571)
77 3hfq_A Uncharacterized protein 44.5 1.7E+02 0.0058 26.0 19.4 166 212-411 145-323 (347)
78 1kv9_A Type II quinohemoprotei 41.0 2E+02 0.0067 29.2 11.7 26 267-297 62-87 (668)
79 2hqs_A Protein TOLB; TOLB, PAL 40.7 2.3E+02 0.0078 26.4 15.5 101 172-301 203-306 (415)
80 1yiq_A Quinohemoprotein alcoho 40.7 3.1E+02 0.01 27.9 13.1 119 267-412 66-197 (689)
81 2p4o_A Hypothetical protein; p 40.3 1.9E+02 0.0066 25.4 12.9 110 271-412 42-152 (306)
82 3m0c_C LDL receptor, low-densi 40.2 2.4E+02 0.0082 29.4 12.2 73 212-297 562-634 (791)
83 2z2n_A Virginiamycin B lyase; 39.4 1.8E+02 0.0062 24.9 20.5 192 153-410 104-298 (299)
84 1n7d_A LDL receptor, low-densi 38.9 2.2E+02 0.0075 29.1 11.7 55 267-328 544-602 (699)
85 1yr2_A Prolyl oligopeptidase; 38.3 3.4E+02 0.011 27.6 21.7 166 212-412 272-446 (741)
86 1npe_A Nidogen, entactin; glyc 37.9 1.9E+02 0.0065 24.7 20.7 194 155-411 44-242 (267)
87 4a11_B DNA excision repair pro 37.4 2.3E+02 0.0079 25.5 15.4 23 386-409 256-278 (408)
88 2xyi_A Probable histone-bindin 36.9 2.1E+02 0.007 26.7 10.5 210 159-407 195-410 (430)
89 1egx_A VAsp, vasodilator-stimu 35.2 63 0.0022 24.6 5.2 43 172-228 11-53 (115)
90 1ijq_A LDL receptor, low-densi 35.1 2.4E+02 0.0083 25.1 12.2 114 154-297 127-240 (316)
91 3u4y_A Uncharacterized protein 33.5 2.4E+02 0.0083 24.6 19.6 189 173-411 109-308 (331)
92 1n7d_A LDL receptor, low-densi 33.3 1.4E+02 0.0046 30.7 9.0 75 212-299 544-618 (699)
93 1ddw_A GLGF-domain protein hom 33.1 58 0.002 25.1 4.6 40 172-228 11-51 (120)
94 3p5b_L Low density lipoprotein 30.9 3.3E+02 0.011 25.3 15.1 56 267-329 250-309 (400)
95 3vgz_A Uncharacterized protein 30.2 2.8E+02 0.0096 24.3 22.0 189 171-410 68-265 (353)
96 4aow_A Guanine nucleotide-bind 28.6 2.9E+02 0.01 24.0 17.1 23 386-409 317-339 (340)
97 3o4h_A Acylamino-acid-releasin 28.3 1.3E+02 0.0044 29.5 7.7 110 158-299 122-231 (582)
98 3mmy_A MRNA export factor; mRN 28.2 3E+02 0.01 24.1 18.2 97 171-299 107-203 (368)
99 1jmx_B Amine dehydrogenase; ox 28.2 3E+02 0.01 24.0 10.4 61 271-348 10-73 (349)
100 4ery_A WD repeat-containing pr 28.1 2.9E+02 0.01 23.9 14.5 136 171-349 128-268 (312)
101 3mkq_A Coatomer beta'-subunit; 27.8 4.9E+02 0.017 26.3 20.6 179 171-410 76-262 (814)
102 2pm9_A Protein WEB1, protein t 27.8 3.4E+02 0.012 24.5 15.5 97 287-409 241-339 (416)
103 2qe8_A Uncharacterized protein 27.7 2.8E+02 0.0097 24.8 9.5 62 267-328 71-139 (343)
104 2ojh_A Uncharacterized protein 27.4 2.7E+02 0.0094 23.3 15.5 185 172-410 62-261 (297)
105 1q7f_A NHL, brain tumor CG1071 27.3 2.9E+02 0.0099 23.5 17.9 201 153-409 35-240 (286)
106 1rwi_B Serine/threonine-protei 27.1 2.8E+02 0.0095 23.3 16.9 193 153-410 29-225 (270)
107 1i2h_A PSD-ZIP45(homer-1C/VESL 25.8 86 0.0029 25.7 4.6 40 172-228 16-56 (168)
108 3g4e_A Regucalcin; six bladed 25.5 3.3E+02 0.011 23.6 13.0 24 386-409 159-184 (297)
109 3dr2_A Exported gluconolactona 25.0 3.4E+02 0.012 23.6 9.5 105 172-305 169-277 (305)
110 2z3z_A Dipeptidyl aminopeptida 24.7 5.2E+02 0.018 25.6 17.7 149 171-349 234-389 (706)
111 2kwv_A RAD30 homolog B, DNA po 24.5 37 0.0013 21.1 1.6 17 41-57 21-37 (48)
112 2qc5_A Streptogramin B lactona 24.2 3.3E+02 0.011 23.1 11.2 105 271-410 156-262 (300)
113 3sfz_A APAF-1, apoptotic pepti 23.6 5.1E+02 0.017 28.0 12.0 192 154-409 969-1160(1249)
114 3tc9_A Hypothetical hydrolase; 23.5 4.6E+02 0.016 24.6 11.2 115 266-409 140-259 (430)
115 3v65_B Low-density lipoprotein 23.1 4.4E+02 0.015 24.2 19.5 130 158-328 87-221 (386)
116 2fp8_A Strictosidine synthase; 23.0 3.8E+02 0.013 23.5 9.3 54 286-349 260-313 (322)
117 2qc5_A Streptogramin B lactona 22.4 3.6E+02 0.012 22.9 11.2 50 271-328 72-122 (300)
118 3s3x_D Psalmotoxin-1; acid-sen 22.3 31 0.0011 19.3 0.9 22 155-181 15-36 (37)
119 3dwl_C Actin-related protein 2 22.3 2.1E+02 0.0072 25.6 7.5 140 235-407 32-177 (377)
120 1rmk_A MU-O-conotoxin mrvib; b 22.1 14 0.00047 20.4 -0.6 14 151-164 14-27 (31)
121 1w6s_A Methanol dehydrogenase 21.7 5.9E+02 0.02 25.3 11.1 121 265-412 56-196 (599)
122 3sov_A LRP-6, low-density lipo 21.4 4.4E+02 0.015 23.5 13.2 120 153-304 128-248 (318)
123 3c75_H MADH, methylamine dehyd 20.1 5.6E+02 0.019 24.2 12.9 57 341-411 349-406 (426)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.16 E-value=4e-09 Score=99.25 Aligned_cols=215 Identities=15% Similarity=0.053 Sum_probs=134.7
Q ss_pred EEeeeccEEEeeecC-CCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860 153 IYFVAYGFICFGESS-CHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV 230 (440)
Q Consensus 153 i~~s~~GLlcl~~~~-~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~ 230 (440)
.....+|.|.+.... ......+.++||.|++|..+|+++..... +.+..++. +|+.++ ..
T Consensus 50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~iyv~GG~~ 111 (306)
T 3ii7_A 50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS-------------LAACAAEG-----KIYTSGGSE 111 (306)
T ss_dssp EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS-------------CEEEEETT-----EEEEECCBB
T ss_pred EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc-------------eeEEEECC-----EEEEECCCC
Confidence 344456666554431 12346789999999999999876654211 11222221 566664 22
Q ss_pred -ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-----ceEEEEEEcCCccEEEe-eC
Q 035860 231 -IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-----HTCIFSFDFNKEEFKKI-DL 303 (440)
Q Consensus 231 -~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~Il~fD~~~e~~~~i-~l 303 (440)
+......+++|+.. ++.|+.++.+|...... ..+.++|.+|.+....... ...+..||+.+++|..+ ++
T Consensus 112 ~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 187 (306)
T 3ii7_A 112 VGNSALYLFECYDTR-TESWHTKPSMLTQRCSH---GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM 187 (306)
T ss_dssp TTBSCCCCEEEEETT-TTEEEEECCCSSCCBSC---EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC
T ss_pred CCCcEeeeEEEEeCC-CCceEeCCCCcCCccee---EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc
Confidence 33445679999999 99999998777633222 2678899999987543221 25699999999999998 45
Q ss_pred CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE
Q 035860 304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI 383 (440)
Q Consensus 304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~ 383 (440)
|... ....++.++|+|+++.... .....-+||+++-. ...|+++..+|... .. ..+.+
T Consensus 188 p~~r----~~~~~~~~~~~i~v~GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~-~~~~~ 245 (306)
T 3ii7_A 188 IEAR----KNHGLVFVKDKIFAVGGQN------GLGGLDNVEYYDIK--LNEWKMVSPMPWKG---------VT-VKCAA 245 (306)
T ss_dssp SSCC----BSCEEEEETTEEEEECCEE------TTEEBCCEEEEETT--TTEEEECCCCSCCB---------SC-CEEEE
T ss_pred cchh----hcceEEEECCEEEEEeCCC------CCCCCceEEEeeCC--CCcEEECCCCCCCc---------cc-eeEEE
Confidence 5432 4567788899999998643 11223467777753 46799875444221 11 11222
Q ss_pred EEcCcEEEEeec----CCCceEEEECCCCcEEE
Q 035860 384 VVAGRWMVLDTF----RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 384 ~~~g~~i~l~~~----~~~~~~~yd~~~~~~~~ 412 (440)
.++.++++.-. ..+.+..||+++++|..
T Consensus 246 -~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 246 -VGSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp -ETTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred -ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 25543344211 23467999999999976
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.16 E-value=7.3e-09 Score=97.69 Aligned_cols=215 Identities=11% Similarity=0.005 Sum_probs=133.5
Q ss_pred EEeeeccEEEeeecC----C--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEE
Q 035860 153 IYFVAYGFICFGESS----C--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQ 226 (440)
Q Consensus 153 i~~s~~GLlcl~~~~----~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 226 (440)
.+...+|.|.+.... . .....+.++||.|++|..+|+++..... .....++. +|+.
T Consensus 65 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~iyv 126 (308)
T 1zgk_A 65 AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-------------IGVGVIDG-----HIYA 126 (308)
T ss_dssp EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-------------CEEEEETT-----EEEE
T ss_pred eEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-------------cEEEEECC-----EEEE
Confidence 344556766655431 0 1134689999999999999977654211 11222221 5666
Q ss_pred Ee-ccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eC
Q 035860 227 SY-PVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DL 303 (440)
Q Consensus 227 ~~-~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~l 303 (440)
++ ..+......+++|+.. ++.|+.+..+|...... ..+.++|.+|.+....... ...+..||+.+++|..+ ++
T Consensus 127 ~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 202 (308)
T 1zgk_A 127 VGGSHGCIHHNSVERYEPE-RDEWHLVAPMLTRRIGV---GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM 202 (308)
T ss_dssp ECCEETTEECCCEEEEETT-TTEEEECCCCSSCCBSC---EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC
T ss_pred EcCCCCCcccccEEEECCC-CCeEeECCCCCccccce---EEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC
Confidence 64 2222334568999999 99999998776532222 2677899999987544221 25799999999999988 44
Q ss_pred CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE
Q 035860 304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI 383 (440)
Q Consensus 304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~ 383 (440)
|... .....+.++|+|+++.... .....-++|+++-. ...|+++..++... .....+.
T Consensus 203 p~~r----~~~~~~~~~~~iyv~GG~~------~~~~~~~v~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~- 260 (308)
T 1zgk_A 203 NTIR----SGAGVCVLHNCIYAAGGYD------GQDQLNSVERYDVE--TETWTFVAPMKHRR---------SALGITV- 260 (308)
T ss_dssp SSCC----BSCEEEEETTEEEEECCBC------SSSBCCCEEEEETT--TTEEEECCCCSSCC---------BSCEEEE-
T ss_pred CCcc----ccceEEEECCEEEEEeCCC------CCCccceEEEEeCC--CCcEEECCCCCCCc---------cceEEEE-
Confidence 4432 4456778899999998654 12234567777753 46899876443211 1111222
Q ss_pred EEcCcEEEEeec----CCCceEEEECCCCcEEE
Q 035860 384 VVAGRWMVLDTF----RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 384 ~~~g~~i~l~~~----~~~~~~~yd~~~~~~~~ 412 (440)
.++.++++.-. ..+.+..||+++++|..
T Consensus 261 -~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 261 -HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp -ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred -ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 25543344211 13467899999999875
No 3
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.15 E-value=9.6e-09 Score=96.35 Aligned_cols=214 Identities=10% Similarity=0.014 Sum_probs=133.0
Q ss_pred EEeeeccEEEeeecCC--CcceeEEEEcccccc---cccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEE
Q 035860 153 IYFVAYGFICFGESSC--HVKDHVHLWNPLRRE---VLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQS 227 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~ 227 (440)
.....+|.|.+..... .....++++||.|++ |..+++++..... .....++ . +|+.+
T Consensus 57 ~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-------------~~~~~~~----~-~lyv~ 118 (301)
T 2vpj_A 57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-------------AGATTLG----D-MIYVS 118 (301)
T ss_dssp EEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-------------CEEEEET----T-EEEEE
T ss_pred cEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-------------eeEEEEC----C-EEEEE
Confidence 3444566665543311 124579999999999 9999877654211 1122222 1 56666
Q ss_pred e-ccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCC
Q 035860 228 Y-PVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLP 304 (440)
Q Consensus 228 ~-~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP 304 (440)
+ ..+......+++|+.. ++.|+.++.+|...... ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|
T Consensus 119 GG~~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 194 (301)
T 2vpj_A 119 GGFDGSRRHTSMERYDPN-IDQWSMLGDMQTAREGA---GLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA 194 (301)
T ss_dssp CCBCSSCBCCEEEEEETT-TTEEEEEEECSSCCBSC---EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS
T ss_pred cccCCCcccceEEEEcCC-CCeEEECCCCCCCcccc---eEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC
Confidence 4 2222335679999999 99999998776532222 2677899999987543221 25799999999999988 445
Q ss_pred CCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEE
Q 035860 305 IDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIV 384 (440)
Q Consensus 305 ~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 384 (440)
... ....++..+|+|+++..... ....-+||+++-. ...|+++..+|... .....+.
T Consensus 195 ~~r----~~~~~~~~~~~i~v~GG~~~------~~~~~~v~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~-- 251 (301)
T 2vpj_A 195 TKR----SGAGVALLNDHIYVVGGFDG------TAHLSSVEAYNIR--TDSWTTVTSMTTPR---------CYVGATV-- 251 (301)
T ss_dssp SCC----BSCEEEEETTEEEEECCBCS------SSBCCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--
T ss_pred ccc----ccceEEEECCEEEEEeCCCC------CcccceEEEEeCC--CCcEEECCCCCCcc---------cceeEEE--
Confidence 432 45577888999999986541 1123467777653 46899875443221 1112222
Q ss_pred EcCcEEEE-eecC----CCceEEEECCCCcEEE
Q 035860 385 VAGRWMVL-DTFR----HDNKFVLDLENDDCHL 412 (440)
Q Consensus 385 ~~g~~i~l-~~~~----~~~~~~yd~~~~~~~~ 412 (440)
.+|. |++ .-.. .+.+..||+++++|..
T Consensus 252 ~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 252 LRGR-LYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp ETTE-EEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred ECCE-EEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 2555 554 2111 1356899999999875
No 4
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.14 E-value=1.1e-08 Score=95.97 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=132.7
Q ss_pred EeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860 154 YFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV 230 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~ 230 (440)
+...+|.|.+..... .....+.++||.|++|..+|+++..... +.+..++ . +|+.++ ..
T Consensus 57 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~----~-~iyv~GG~~ 118 (302)
T 2xn4_A 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-------------LGAAVLN----G-LLYAVGGFD 118 (302)
T ss_dssp EEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-------------CEEEEET----T-EEEEEEEEC
T ss_pred EEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-------------eEEEEEC----C-EEEEEcCCC
Confidence 344566665544311 1235789999999999999977654211 1122222 1 566554 22
Q ss_pred ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC---ceEEEEEEcCCccEEEe-eCCCC
Q 035860 231 IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI---HTCIFSFDFNKEEFKKI-DLPID 306 (440)
Q Consensus 231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~Il~fD~~~e~~~~i-~lP~~ 306 (440)
+......+++|+.. ++.|+.++.+|...... ..+.++|.+|-+....... ...+..||+.+++|..+ ++|..
T Consensus 119 ~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 194 (302)
T 2xn4_A 119 GSTGLSSVEAYNIK-SNEWFHVAPMNTRRSSV---GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR 194 (302)
T ss_dssp SSCEEEEEEEEETT-TTEEEEECCCSSCCBSC---EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC
T ss_pred CCccCceEEEEeCC-CCeEeecCCCCCcccCc---eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc
Confidence 22334578999999 99999998776532222 2678899999986543221 24699999999999988 45543
Q ss_pred CCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEc
Q 035860 307 CNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVA 386 (440)
Q Consensus 307 ~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 386 (440)
. ....++..+|+|+++.... .....-++|+++-. ...|+++..++... .....+. .+
T Consensus 195 r----~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~~~~r---------~~~~~~~--~~ 251 (302)
T 2xn4_A 195 R----SGAGVGVLNNLLYAVGGHD------GPLVRKSVEVYDPT--TNAWRQVADMNMCR---------RNAGVCA--VN 251 (302)
T ss_dssp C----BSCEEEEETTEEEEECCBS------SSSBCCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ET
T ss_pred c----ccccEEEECCEEEEECCCC------CCcccceEEEEeCC--CCCEeeCCCCCCcc---------ccCeEEE--EC
Confidence 2 4457788899999998654 11223467887753 46899876443221 1112222 25
Q ss_pred CcEEEEeec----CCCceEEEECCCCcEEE
Q 035860 387 GRWMVLDTF----RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 387 g~~i~l~~~----~~~~~~~yd~~~~~~~~ 412 (440)
|.++++.-. ..+.+..||+++++|..
T Consensus 252 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 252 GLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 543334211 12457999999999875
No 5
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.08 E-value=2.1e-08 Score=94.92 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=124.3
Q ss_pred eEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc--ccCCcceEEEEEeCCCCCc
Q 035860 173 HVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV--IELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 173 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~--~~~~~~~~~Vyss~~t~~W 249 (440)
.++++||.|++|..+|+++..... + ++... +. +|+.++ .. +......+++|+.. ++.|
T Consensus 79 ~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W 139 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLPPLPSARCL-------------F-GLGEV---DD-KIYVVAGKDLQTEASLDSVLCYDPV-AAKW 139 (318)
T ss_dssp EEEEEETTTTEEEECSCBSSCBCS-------------C-EEEEE---TT-EEEEEEEEBTTTCCEEEEEEEEETT-TTEE
T ss_pred cEEEEeCCCCcEEECCCCCccccc-------------c-ceEEE---CC-EEEEEcCccCCCCcccceEEEEeCC-CCCE
Confidence 388999999999999876654211 1 22222 11 466664 11 22344578999999 9999
Q ss_pred ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEE
Q 035860 250 RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALV 326 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv 326 (440)
+.+..+|...... ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|... .....+..+|+|+++
T Consensus 140 ~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~ 212 (318)
T 2woz_A 140 SEVKNLPIKVYGH---NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----SMFGVAIHKGKIVIA 212 (318)
T ss_dssp EEECCCSSCEESC---EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEE
T ss_pred eECCCCCCccccc---EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----ccceEEEECCEEEEE
Confidence 9998777633222 2677999999987542211 25699999999999988 445432 445678889999999
Q ss_pred EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEee------------
Q 035860 327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDT------------ 394 (440)
Q Consensus 327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~------------ 394 (440)
.... .....-++|+++-. ...|+++..+|... ....++. .+|.++++.-
T Consensus 213 GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~ 273 (318)
T 2woz_A 213 GGVT------EDGLSASVEAFDLK--TNKWEVMTEFPQER---------SSISLVS--LAGSLYAIGGFAMIQLESKEFA 273 (318)
T ss_dssp EEEE------TTEEEEEEEEEETT--TCCEEECCCCSSCC---------BSCEEEE--ETTEEEEECCBCCBC----CCB
T ss_pred cCcC------CCCccceEEEEECC--CCeEEECCCCCCcc---------cceEEEE--ECCEEEEECCeeccCCCCceec
Confidence 8654 12234578888753 56899975544321 1112222 2454333311
Q ss_pred -cCCCceEEEECCCCcEEE
Q 035860 395 -FRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 395 -~~~~~~~~yd~~~~~~~~ 412 (440)
...+.+..||+++++|..
T Consensus 274 ~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 274 PTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp CCBCCCEEEEETTTTEEEE
T ss_pred cceeeeEEEEeCCCCEehh
Confidence 112567899999999874
No 6
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.06 E-value=2.1e-08 Score=94.76 Aligned_cols=196 Identities=13% Similarity=0.041 Sum_probs=126.1
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c---cccCCcceEEEEEeCCCC
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P---VIELSDYKIAVYTLGKDD 247 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~---~~~~~~~~~~Vyss~~t~ 247 (440)
..++++||.|++|..+|+++..... + ++... +. +|+.++ . .+......+++|+.. ++
T Consensus 67 ~~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~lyv~GG~~~~~~~~~~~~~~~~d~~-~~ 127 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMPPLPSPRCL-------------F-GLGEA---LN-SIYVVGGREIKDGERCLDSVMCYDRL-SF 127 (315)
T ss_dssp EEEEEEETTTTEEEECCCBSSCEES-------------C-EEEEE---TT-EEEEECCEESSTTCCBCCCEEEEETT-TT
T ss_pred cceEEecCCCCeEEECCCCCcchhc-------------e-eEEEE---CC-EEEEEeCCcCCCCCcccceEEEECCC-CC
Confidence 3489999999999999887654211 1 22222 11 566664 1 123455679999999 99
Q ss_pred CcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEE
Q 035860 248 SWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLA 324 (440)
Q Consensus 248 ~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~ 324 (440)
+|+.++.+|...... ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|... .....+..+|+|+
T Consensus 128 ~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iy 200 (315)
T 4asc_A 128 KWGESDPLPYVVYGH---TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR----SLFGATVHDGRII 200 (315)
T ss_dssp EEEECCCCSSCCBSC---EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEE
T ss_pred cEeECCCCCCcccce---eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch----hceEEEEECCEEE
Confidence 999998777633222 2678999999997652221 25799999999999988 455432 4556788899999
Q ss_pred EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec---------
Q 035860 325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF--------- 395 (440)
Q Consensus 325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~--------- 395 (440)
++.... .....-++|+++-. ...|+.+..+|.... ....+. .+|.++++.-.
T Consensus 201 v~GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~---------~~~~~~--~~~~l~v~GG~~~~~~~~~~ 261 (315)
T 4asc_A 201 VAAGVT------DTGLTSSAEVYSIT--DNKWAPFEAFPQERS---------SLSLVS--LVGTLYAIGGFATLETESGE 261 (315)
T ss_dssp EEEEEC------SSSEEEEEEEEETT--TTEEEEECCCSSCCB---------SCEEEE--ETTEEEEEEEEEEEECTTSC
T ss_pred EEeccC------CCCccceEEEEECC--CCeEEECCCCCCccc---------ceeEEE--ECCEEEEECCccccCcCCcc
Confidence 998764 12234578888763 568998854432211 111222 24443333111
Q ss_pred ----CCCceEEEECCCCcEEE
Q 035860 396 ----RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 396 ----~~~~~~~yd~~~~~~~~ 412 (440)
..+.+..||+++++|..
T Consensus 262 ~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 262 LVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EEEEEEEEEEEEETTTTEEEE
T ss_pred ccccccCcEEEecCCCChhhh
Confidence 11356899999999874
No 7
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.03 E-value=5.6e-08 Score=91.06 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=125.0
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCC-
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDS- 248 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~- 248 (440)
...+.++||.|++|..+|.++..... +.....+. +|+.++ ..+......+++|+.. ++.
T Consensus 30 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~l~v~GG~~~~~~~~~~~~~d~~-~~~~ 90 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPSITRKRRY-------------VASVSLHD-----RIYVIGGYDGRSRLSSVECLDYT-ADED 90 (301)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBS-------------CEEEEETT-----EEEEECCBCSSCBCCCEEEEETT-CCTT
T ss_pred eeEEEEEcCCCCeEEeCCCCChhhcc-------------ccEEEECC-----EEEEEcCCCCCccCceEEEEECC-CCCC
Confidence 35789999999999999876553211 11222221 566664 2223344578999999 999
Q ss_pred --cceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEE
Q 035860 249 --WRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLA 324 (440)
Q Consensus 249 --W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~ 324 (440)
|+.+..+|...... ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|... .....+..+|+|+
T Consensus 91 ~~W~~~~~~p~~r~~~---~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iy 163 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLA---GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR----EGAGLVVASGVIY 163 (301)
T ss_dssp CCCEEECCCSSCCBSC---EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC----BSCEEEEETTEEE
T ss_pred CeeEECCCCCCCccce---eEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc----ccceEEEECCEEE
Confidence 99998777633222 2677899999987644322 25799999999999988 555432 4456778899999
Q ss_pred EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe-ecC----CCc
Q 035860 325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD-TFR----HDN 399 (440)
Q Consensus 325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~----~~~ 399 (440)
++.... .....-++|+++-. ...|+++..+|... .. ..+.. .++. |++. -.. .+.
T Consensus 164 v~GG~~------~~~~~~~~~~~d~~--~~~W~~~~~~p~~r---------~~-~~~~~-~~~~-i~v~GG~~~~~~~~~ 223 (301)
T 2vpj_A 164 CLGGYD------GLNILNSVEKYDPH--TGHWTNVTPMATKR---------SG-AGVAL-LNDH-IYVVGGFDGTAHLSS 223 (301)
T ss_dssp EECCBC------SSCBCCCEEEEETT--TTEEEEECCCSSCC---------BS-CEEEE-ETTE-EEEECCBCSSSBCCC
T ss_pred EECCCC------CCcccceEEEEeCC--CCcEEeCCCCCccc---------cc-ceEEE-ECCE-EEEEeCCCCCcccce
Confidence 998654 11234467777753 46899874433211 11 11122 2454 5542 111 356
Q ss_pred eEEEECCCCcEEE
Q 035860 400 KFVLDLENDDCHL 412 (440)
Q Consensus 400 ~~~yd~~~~~~~~ 412 (440)
+..||+++++|..
T Consensus 224 v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 224 VEAYNIRTDSWTT 236 (301)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeCCCCcEEE
Confidence 8999999999874
No 8
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.02 E-value=8.4e-08 Score=89.93 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=124.8
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W 249 (440)
...+.++||.+++|..+++++..... . ++... +. +|+.++ ..+......+++|+.. ++.|
T Consensus 29 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~lyv~GG~~~~~~~~~~~~~d~~-~~~W 89 (302)
T 2xn4_A 29 IRSVECYDFKEERWHQVAELPSRRCR-------------A-GMVYM---AG-LVFAVGGFNGSLRVRTVDSYDPV-KDQW 89 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBS-------------C-EEEEE---TT-EEEEESCBCSSSBCCCEEEEETT-TTEE
T ss_pred CCcEEEEcCcCCcEeEcccCCccccc-------------c-eEEEE---CC-EEEEEeCcCCCccccceEEECCC-CCce
Confidence 35689999999999999876654211 1 22221 11 466664 2222334578999999 9999
Q ss_pred ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEE
Q 035860 250 RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVT 327 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~ 327 (440)
+.+..+|...... ..+.++|.+|-+....... ...+..||+.+.+|..+ ++|... .....+.++|+|+++.
T Consensus 90 ~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~G 162 (302)
T 2xn4_A 90 TSVANMRDRRSTL---GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR----SSVGVGVVGGLLYAVG 162 (302)
T ss_dssp EEECCCSSCCBSC---EEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEEC
T ss_pred eeCCCCCccccce---EEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc----cCceEEEECCEEEEEe
Confidence 9998877633322 2677899999997654332 25789999999999998 445432 4456778899999998
Q ss_pred cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec----CCCceEEE
Q 035860 328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF----RHDNKFVL 403 (440)
Q Consensus 328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~----~~~~~~~y 403 (440)
.... ......-++|.++-. ...|+++..+|... .....+. .++.++++.-. ..+.+..|
T Consensus 163 G~~~----~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~y 225 (302)
T 2xn4_A 163 GYDV----ASRQCLSTVECYNAT--TNEWTYIAEMSTRR---------SGAGVGV--LNNLLYAVGGHDGPLVRKSVEVY 225 (302)
T ss_dssp CEET----TTTEECCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ETTEEEEECCBSSSSBCCCEEEE
T ss_pred CCCC----CCCccccEEEEEeCC--CCcEEECCCCcccc---------ccccEEE--ECCEEEEECCCCCCcccceEEEE
Confidence 6531 000113357777653 46899985443211 1111222 25543334211 13468999
Q ss_pred ECCCCcEEE
Q 035860 404 DLENDDCHL 412 (440)
Q Consensus 404 d~~~~~~~~ 412 (440)
|+++++|..
T Consensus 226 d~~~~~W~~ 234 (302)
T 2xn4_A 226 DPTTNAWRQ 234 (302)
T ss_dssp ETTTTEEEE
T ss_pred eCCCCCEee
Confidence 999999874
No 9
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.01 E-value=8.9e-11 Score=79.71 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHH
Q 035860 41 SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAH 82 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~ 82 (440)
...||+|++.+||++||+++++++++|||+|+.++.++.|.+
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 479999999999999999999999999999999999988754
No 10
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.00 E-value=4.8e-08 Score=91.78 Aligned_cols=200 Identities=10% Similarity=0.032 Sum_probs=125.2
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...+.++||.|++|..+++++..... +....++. +|+.++-........+++|+.. ++.|+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~lyv~GG~~~~~~~~~~~~d~~-~~~W~ 83 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRD-------------AACVFWDN-----VVYILGGSQLFPIKRMDCYNVV-KDSWY 83 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBS-------------CEEEEETT-----EEEEECCBSSSBCCEEEEEETT-TTEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccce-------------eEEEEECC-----EEEEEeCCCCCCcceEEEEeCC-CCeEE
Confidence 36789999999999999877654211 11222221 4666641113445678999999 99999
Q ss_pred eeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEE
Q 035860 251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVT 327 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~ 327 (440)
.+..+|...... ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|... .....+.++|+|+++.
T Consensus 84 ~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~G 156 (306)
T 3ii7_A 84 SKLGPPTPRDSL---AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----CSHGMVEANGLIYVCG 156 (306)
T ss_dssp EEECCSSCCBSC---EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEEC
T ss_pred ECCCCCccccce---eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----ceeEEEEECCEEEEEC
Confidence 998877533322 2678899999987654221 25799999999999988 455432 4456778899999998
Q ss_pred cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe-ec----CCCceEE
Q 035860 328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD-TF----RHDNKFV 402 (440)
Q Consensus 328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~----~~~~~~~ 402 (440)
..... .......-++|+++-. ...|+++..++... .....+. .++. |++. -. ..+.+..
T Consensus 157 G~~~~--~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~~~-i~v~GG~~~~~~~~~~~~ 220 (306)
T 3ii7_A 157 GSLGN--NVSGRVLNSCEVYDPA--TETWTELCPMIEAR---------KNHGLVF--VKDK-IFAVGGQNGLGGLDNVEY 220 (306)
T ss_dssp CEESC--TTTCEECCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ETTE-EEEECCEETTEEBCCEEE
T ss_pred CCCCC--CCcccccceEEEeCCC--CCeEEECCCccchh---------hcceEEE--ECCE-EEEEeCCCCCCCCceEEE
Confidence 64310 0000014467777653 46899875433211 1111222 2454 5442 11 1246799
Q ss_pred EECCCCcEEE
Q 035860 403 LDLENDDCHL 412 (440)
Q Consensus 403 yd~~~~~~~~ 412 (440)
||+++++|..
T Consensus 221 yd~~~~~W~~ 230 (306)
T 3ii7_A 221 YDIKLNEWKM 230 (306)
T ss_dssp EETTTTEEEE
T ss_pred eeCCCCcEEE
Confidence 9999999875
No 11
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.00 E-value=1.2e-10 Score=107.47 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=45.3
Q ss_pred CCCCcHHHHHHHHhcCCcccce-eeeccccchhhhhCChhHHHHHHhhh
Q 035860 41 SMEFPSNIIYNILLRQPVKVLL-RFRCVSKTWSNIIDSHSFAHAHVMAA 88 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP~~sL~-R~r~VCK~W~~li~s~~F~~~~~~~~ 88 (440)
...||+|||.+||+|||+++|+ ||++|||+|++||+++.|.+.+..+.
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4789999999999999999999 99999999999999999999988765
No 12
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.98 E-value=5.1e-08 Score=91.85 Aligned_cols=196 Identities=13% Similarity=0.064 Sum_probs=123.5
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c----cccCCcceEEEEEeCC
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P----VIELSDYKIAVYTLGK 245 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~----~~~~~~~~~~Vyss~~ 245 (440)
...+.++||.|++|..+++++..... . ++... +. +|+.++ . .+......+++|+..
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~- 98 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSG-------------L-AGCVV---GG-LLYAVGGRNNSPDGNTDSSALDCYNPM- 98 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBS-------------C-EEEEE---TT-EEEEECCEEEETTEEEECCCEEEEETT-
T ss_pred cceEEEEcCCCCeEeECCCCCccccc-------------c-eEEEE---CC-EEEEECCCcCCCCCCeecceEEEECCC-
Confidence 46789999999999999876654211 1 22211 11 455553 1 222234568999999
Q ss_pred CCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeE
Q 035860 246 DDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNL 323 (440)
Q Consensus 246 t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L 323 (440)
++.|+.+..+|...... ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|... .....+.++|+|
T Consensus 99 ~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~i 171 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRI---GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR----IGVGVAVLNRLL 171 (308)
T ss_dssp TTEEEECCCCSSCCBTC---EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEE
T ss_pred CCeEeECCCCCcCcccc---EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc----cceEEEEECCEE
Confidence 99999998777633222 2677899999986533221 24689999999999988 555432 445677789999
Q ss_pred EEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEee-c----CCC
Q 035860 324 ALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDT-F----RHD 398 (440)
Q Consensus 324 ~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~----~~~ 398 (440)
+++..... ....-++|.++-. ...|+++..+|.. ......+. .++. |++.- . ..+
T Consensus 172 yv~GG~~~------~~~~~~~~~yd~~--~~~W~~~~~~p~~---------r~~~~~~~--~~~~-iyv~GG~~~~~~~~ 231 (308)
T 1zgk_A 172 YAVGGFDG------TNRLNSAECYYPE--RNEWRMITAMNTI---------RSGAGVCV--LHNC-IYAAGGYDGQDQLN 231 (308)
T ss_dssp EEECCBCS------SCBCCCEEEEETT--TTEEEECCCCSSC---------CBSCEEEE--ETTE-EEEECCBCSSSBCC
T ss_pred EEEeCCCC------CCcCceEEEEeCC--CCeEeeCCCCCCc---------cccceEEE--ECCE-EEEEeCCCCCCccc
Confidence 99986541 1123457777653 4689987544321 11111222 2444 55421 1 135
Q ss_pred ceEEEECCCCcEEE
Q 035860 399 NKFVLDLENDDCHL 412 (440)
Q Consensus 399 ~~~~yd~~~~~~~~ 412 (440)
.+..||+++++|..
T Consensus 232 ~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 232 SVERYDVETETWTF 245 (308)
T ss_dssp CEEEEETTTTEEEE
T ss_pred eEEEEeCCCCcEEE
Confidence 68999999999875
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.91 E-value=1.3e-07 Score=90.92 Aligned_cols=180 Identities=12% Similarity=0.045 Sum_probs=110.5
Q ss_pred EEeeeccEEEeeecCCCcceeEEEEccc--ccccccCCCCC-CCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-
Q 035860 153 IYFVAYGFICFGESSCHVKDHVHLWNPL--RREVLRLPKLG-YYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY- 228 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~- 228 (440)
..+..+|-|.+.... ....++++||. +++|..+|+++ ..... ..+..++. +|+.++
T Consensus 14 ~~~~~~~~iyv~GG~--~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-------------~~~~~~~~-----~lyv~GG 73 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGS--AGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-------------ATSAFIDG-----NLYVFGG 73 (357)
T ss_dssp EEEEETTEEEEECGG--GTTCEEEEETTSSSCCEEECCCCTTCCCBS-------------CEEEEETT-----EEEEECC
T ss_pred EEEEECCEEEEEeCc--CCCeEEEEccccCCCCeeECCCCCCCcCcc-------------ceEEEECC-----EEEEEcC
Confidence 444457777665541 23579999998 49999998866 33211 11222221 466664
Q ss_pred c-c----ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCC--------------------
Q 035860 229 P-V----IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNN-------------------- 283 (440)
Q Consensus 229 ~-~----~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------- 283 (440)
. . .......+++|+.. ++.|+.+..+++..... ...+.++|.+|.+......
T Consensus 74 ~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 150 (357)
T 2uvk_A 74 IGKNSEGLTQVFNDVHKYNPK-TNSWVKLMSHAPMGMAG--HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID 150 (357)
T ss_dssp EEECTTSCEEECCCEEEEETT-TTEEEECSCCCSSCCSS--EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCccceeeccEEEEeCC-CCcEEECCCCCCccccc--ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchh
Confidence 1 1 11234568999999 99999998776211111 1256799999998864311
Q ss_pred ---------------CceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEe
Q 035860 284 ---------------IHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVL 347 (440)
Q Consensus 284 ---------------~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l 347 (440)
....+..||+.+.+|..+ ++|.... ....++..+|+|+++..... .....-++|.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~~~~iyv~GG~~~-----~~~~~~~v~~~ 222 (357)
T 2uvk_A 151 KINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNKGDKTWLINGEAK-----PGLRTDAVFEL 222 (357)
T ss_dssp HHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC---BSCEEEEETTEEEEECCEEE-----TTEECCCEEEE
T ss_pred hhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCc---ccccEEEECCEEEEEeeecC-----CCcccCceEEE
Confidence 014899999999999988 5564321 23578888999999975430 11123467776
Q ss_pred eccCCCcccceeEEee
Q 035860 348 KDHYERNEWSKAYKIS 363 (440)
Q Consensus 348 ~~~g~~~~W~~~~~i~ 363 (440)
+-......|+++..++
T Consensus 223 d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 223 DFTGNNLKWNKLAPVS 238 (357)
T ss_dssp ECC---CEEEECCCSS
T ss_pred EecCCCCcEEecCCCC
Confidence 5211246899876553
No 14
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.85 E-value=3.9e-07 Score=85.95 Aligned_cols=198 Identities=9% Similarity=0.057 Sum_probs=118.4
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c----ccc--CCcceEEEEEeC
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P----VIE--LSDYKIAVYTLG 244 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~----~~~--~~~~~~~Vyss~ 244 (440)
..+.++||.|++|.. ++++...+.. .+ +.... .+ +|+.++ . ... .....+++|+..
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~-----------~~-~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~ 75 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKN-----------HV-SLVTK--EN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHL 75 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSS-----------EE-EEECT--TC--CEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred CceEEECCCCCeEec-CCCCCCCCcc-----------ce-EEEEE--CC--EEEEEcCcccCCCCCccccccceEEecCC
Confidence 578999999999986 3332211111 01 22221 11 344443 1 111 112338899999
Q ss_pred CCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC----CCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe
Q 035860 245 KDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN----NIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL 319 (440)
Q Consensus 245 ~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~ 319 (440)
+++|+.++.+|...... ..+.++|.+|.+..... .....+..||+.+.+|..+ ++|... .....+..
T Consensus 76 -~~~W~~~~~~p~~r~~~---~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~ 147 (315)
T 4asc_A 76 -DSEWLGMPPLPSPRCLF---GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV----YGHTVLSH 147 (315)
T ss_dssp -TTEEEECCCBSSCEESC---EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE
T ss_pred -CCeEEECCCCCcchhce---eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc----cceeEEEE
Confidence 99999998777533222 26788999999876431 1135799999999999988 555533 45567789
Q ss_pred CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC---
Q 035860 320 RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR--- 396 (440)
Q Consensus 320 ~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~--- 396 (440)
+|+|+++..... .....-++|+++-. ...|+++..+|... .. ..+.+ .++.++++.-..
T Consensus 148 ~~~iyv~GG~~~-----~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~-~~~~~-~~~~iyv~GG~~~~~ 209 (315)
T 4asc_A 148 MDLVYVIGGKGS-----DRKCLNKMCVYDPK--KFEWKELAPMQTAR---------SL-FGATV-HDGRIIVAAGVTDTG 209 (315)
T ss_dssp TTEEEEECCBCT-----TSCBCCCEEEEETT--TTEEEECCCCSSCC---------BS-CEEEE-ETTEEEEEEEECSSS
T ss_pred CCEEEEEeCCCC-----CCcccceEEEEeCC--CCeEEECCCCCCch---------hc-eEEEE-ECCEEEEEeccCCCC
Confidence 999999987531 12234567888753 46899875443211 11 11112 255433332111
Q ss_pred -CCceEEEECCCCcEEE
Q 035860 397 -HDNKFVLDLENDDCHL 412 (440)
Q Consensus 397 -~~~~~~yd~~~~~~~~ 412 (440)
.+.+..||+++++|..
T Consensus 210 ~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 210 LTSSAEVYSITDNKWAP 226 (315)
T ss_dssp EEEEEEEEETTTTEEEE
T ss_pred ccceEEEEECCCCeEEE
Confidence 1357899999999874
No 15
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.74 E-value=3.5e-07 Score=86.40 Aligned_cols=207 Identities=9% Similarity=0.073 Sum_probs=121.2
Q ss_pred ccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec---cc-c-
Q 035860 158 YGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP---VI-E- 232 (440)
Q Consensus 158 ~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~---~~-~- 232 (440)
++.|++... ..+.++||.|++|...|.+. ..+.. .. ++... + =+|+.++- .. .
T Consensus 15 ~~~i~~~GG-----~~~~~yd~~~~~W~~~~~~~-~~~r~-----------~~-~~~~~---~-~~lyv~GG~~~~~~~~ 72 (318)
T 2woz_A 15 KDLILLVND-----TAAVAYDPMENECYLTALAE-QIPRN-----------HS-SIVTQ---Q-NQVYVVGGLYVDEENK 72 (318)
T ss_dssp EEEEEEECS-----SEEEEEETTTTEEEEEEECT-TSCSS-----------EE-EEECS---S-SCEEEEESSCC-----
T ss_pred cchhhhccc-----cceEEECCCCCceecccCCc-cCCcc-----------ce-EEEEE---C-CEEEEECCcccCcccc
Confidence 345554444 35789999999998843221 11111 01 22211 1 13555531 00 0
Q ss_pred --CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC--CC-ceEEEEEEcCCccEEEe-eCCCC
Q 035860 233 --LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN--NI-HTCIFSFDFNKEEFKKI-DLPID 306 (440)
Q Consensus 233 --~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~--~~-~~~Il~fD~~~e~~~~i-~lP~~ 306 (440)
.....+++|+.. ++.|+.++.+|...... ..+.++|.+|.+..... .. ...+..||+.+.+|..+ ++|..
T Consensus 73 ~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 148 (318)
T 2woz_A 73 DQPLQSYFFQLDNV-SSEWVGLPPLPSARCLF---GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK 148 (318)
T ss_dssp --CCCBEEEEEETT-TTEEEECSCBSSCBCSC---EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC
T ss_pred CCCccccEEEEeCC-CCcEEECCCCCcccccc---ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc
Confidence 112238899999 99999998777633222 26778999999987642 11 36799999999999988 55553
Q ss_pred CCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEc
Q 035860 307 CNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVA 386 (440)
Q Consensus 307 ~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 386 (440)
. .....+..+|+|+++..... .....-++|+++-. ...|+++..++... .....+. .+
T Consensus 149 r----~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~ 206 (318)
T 2woz_A 149 V----YGHNVISHNGMIYCLGGKTD-----DKKCTNRVFIYNPK--KGDWKDLAPMKTPR---------SMFGVAI--HK 206 (318)
T ss_dssp E----ESCEEEEETTEEEEECCEES-----SSCBCCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ET
T ss_pred c----cccEEEEECCEEEEEcCCCC-----CCCccceEEEEcCC--CCEEEECCCCCCCc---------ccceEEE--EC
Confidence 3 34466778999999986431 11123457888753 46899875443211 1111222 24
Q ss_pred CcEEEEeecC----CCceEEEECCCCcEEE
Q 035860 387 GRWMVLDTFR----HDNKFVLDLENDDCHL 412 (440)
Q Consensus 387 g~~i~l~~~~----~~~~~~yd~~~~~~~~ 412 (440)
+.+.++.-.. .+.+..||+++++|..
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 5433332111 1356799999999875
No 16
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.63 E-value=1.9e-05 Score=77.78 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=42.1
Q ss_pred CCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHh
Q 035860 41 SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVM 86 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~ 86 (440)
...||+|++.+||+.|++++|+|+.+|||+|+.++.++.+.+....
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 3689999999999999999999999999999999999988776654
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.60 E-value=2.8e-06 Score=83.65 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=40.9
Q ss_pred CCCcHH----HHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHhh
Q 035860 42 MEFPSN----IIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMA 87 (440)
Q Consensus 42 ~~LP~D----ll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~~ 87 (440)
..||+| |+..||+.|++++|+|+.+|||+|+.++.++.+.+....+
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~ 61 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 469999 9999999999999999999999999999988777665543
No 18
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.58 E-value=4.7e-06 Score=79.89 Aligned_cols=225 Identities=11% Similarity=0.076 Sum_probs=125.0
Q ss_pred cEEeeeccEEEeeecC-C------CcceeEEEEcccccccccCCCCC-CCCCCCCCcccccccccceEEEeeeCCCCCEE
Q 035860 152 PIYFVAYGFICFGESS-C------HVKDHVHLWNPLRREVLRLPKLG-YYCDYQHDYYDAYRGLRGHFGMGYDSATGTYK 223 (440)
Q Consensus 152 ~i~~s~~GLlcl~~~~-~------~~~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~yk 223 (440)
...+..+|-|.+.... . .....+.++||.|++|..+++++ .. .. ...+..++. +
T Consensus 59 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--r~-----------~~~~~~~~~-----~ 120 (357)
T 2uvk_A 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMG--MA-----------GHVTFVHNG-----K 120 (357)
T ss_dssp CEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSC--CS-----------SEEEEEETT-----E
T ss_pred ceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcc--cc-----------cceEEEECC-----E
Confidence 3445557766654431 0 11357899999999999998866 22 11 121222322 5
Q ss_pred EEEEe-cccc----------------------------------CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccE
Q 035860 224 IVQSY-PVIE----------------------------------LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGV 268 (440)
Q Consensus 224 Vv~~~-~~~~----------------------------------~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v 268 (440)
|+.++ .... .....+++|+.. ++.|+.+..+|....... ..+
T Consensus 121 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~~~~~~--~~~ 197 (357)
T 2uvk_A 121 AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS-TQQWSYAGESPWYGTAGA--AVV 197 (357)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT-TTEEEEEEECSSCCCBSC--EEE
T ss_pred EEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC-CCcEEECCCCCCCCcccc--cEE
Confidence 66664 1110 123589999999 999999987775322212 267
Q ss_pred EEcCeEEEEEecCCCC--ceEEEEEEc--CCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCC---------
Q 035860 269 SAYGDMHWISFDQNNI--HTCIFSFDF--NKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYD--------- 334 (440)
Q Consensus 269 ~~~G~lywl~~~~~~~--~~~Il~fD~--~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~--------- 334 (440)
.++|.+|.+....... ...+..||+ .+.+|..+ ++|..... .....+..+|+|+++........
T Consensus 198 ~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~ 275 (357)
T 2uvk_A 198 NKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV--AGGFAGISNDSLIFAGGAGFKGSRENYQNGKN 275 (357)
T ss_dssp EETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC--BSCEEEEETTEEEEECCEECTTHHHHHHTTCS
T ss_pred EECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc--ccceEEEECCEEEEEcCccccCCcccccccce
Confidence 8899999986532111 145778877 89999987 44432211 34568889999999986420000
Q ss_pred --CCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec--C---CCceEEEECCC
Q 035860 335 --GDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF--R---HDNKFVLDLEN 407 (440)
Q Consensus 335 --~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~--~---~~~~~~yd~~~ 407 (440)
........++|+++-. ...|+++..+|.... . ..+ +..++.++++.-. . .+.+..|++++
T Consensus 276 ~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~---------~-~~~-~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~ 342 (357)
T 2uvk_A 276 YAHEGLKKSYSTDIHLWH--NGKWDKSGELSQGRA---------Y-GVS-LPWNNSLLIIGGETAGGKAVTDSVLITVKD 342 (357)
T ss_dssp STTTTCCCEECCEEEECC-----CEEEEECSSCCB---------S-SEE-EEETTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred eccccccceeeEEEEecC--CCceeeCCCCCCCcc---------c-cee-EEeCCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence 0001123567777653 468999866553211 1 111 2235554444211 1 13467799999
Q ss_pred CcEEE
Q 035860 408 DDCHL 412 (440)
Q Consensus 408 ~~~~~ 412 (440)
++|..
T Consensus 343 ~~~~~ 347 (357)
T 2uvk_A 343 NKVTV 347 (357)
T ss_dssp CSCEE
T ss_pred cEeEe
Confidence 99753
No 19
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.45 E-value=3.1e-05 Score=76.52 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCC-hhHHHHH
Q 035860 42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDS-HSFAHAH 84 (440)
Q Consensus 42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s-~~F~~~~ 84 (440)
..||+||+.+||+.||+++|+|+..|||+|+.++.+ +...+.+
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 479999999999999999999999999999999998 6554443
No 20
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.45 E-value=1.3e-05 Score=83.97 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=123.3
Q ss_pred eccEEEeeecCC-CcceeEEEEcccccccccCC-CCCCC-CCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccc-
Q 035860 157 AYGFICFGESSC-HVKDHVHLWNPLRREVLRLP-KLGYY-CDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVI- 231 (440)
Q Consensus 157 ~~GLlcl~~~~~-~~~~~~~V~NP~T~~~~~LP-~~~~~-~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~- 231 (440)
.+|-|.+..+.. .....+.++||.|++|..++ +.+.. .+.. + ..+ +...... +. +|+.++ ...
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~-------R--~~h-s~~~~~~-~~-~lyv~GG~~~~ 463 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA-------R--MCH-TFTTISR-NN-QLLLIGGRKAP 463 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCC-------C--BSC-EEEEETT-TT-EEEEECCBSST
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcc-------c--cce-EEEEEcc-CC-EEEEEcCCCCC
Confidence 566555544311 22457899999999999988 52210 0000 0 012 2222210 11 466664 211
Q ss_pred cCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE-cCeEEEEEecCCCCceEEEEEEcCCccEEEee----CCCC
Q 035860 232 ELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA-YGDMHWISFDQNNIHTCIFSFDFNKEEFKKID----LPID 306 (440)
Q Consensus 232 ~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~----lP~~ 306 (440)
......+++|+.. ++.|+.+..+|...... .++.+ +|.+|.+....... .+..||+.+.+|..+. +|..
T Consensus 464 ~~~~~dv~~yd~~-t~~W~~~~~~p~~R~~h---~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~ 537 (695)
T 2zwa_A 464 HQGLSDNWIFDMK-TREWSMIKSLSHTRFRH---SACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQN 537 (695)
T ss_dssp TCBCCCCEEEETT-TTEEEECCCCSBCCBSC---EEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGS
T ss_pred CCccccEEEEeCC-CCcEEECCCCCCCcccc---eEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCc
Confidence 1134568999999 99999998877633322 14554 99999987654332 6999999999999885 4543
Q ss_pred CCCCCCCCEEEEeC---CeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcc------cceeEEeecCCCCCccccccce
Q 035860 307 CNMEPRSPSLINLR---GNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNE------WSKAYKISTDQDGDRIEEEDFF 377 (440)
Q Consensus 307 ~~~~~~~~~L~~~~---G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~------W~~~~~i~~~~~~~~~~~~~~~ 377 (440)
. .....+.++ |+|++++.... +.....-++|+++-. ... |+++..+|.... ..
T Consensus 538 r----~~~~a~v~~~~~~~iyv~GG~~~----~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~~~R--------~~ 599 (695)
T 2zwa_A 538 S----LVSAGLEFDPVSKQGIILGGGFM----DQTTVSDKAIIFKYD--AENATEPITVIKKLQHPLFQR--------YG 599 (695)
T ss_dssp C----CBSCEEEEETTTTEEEEECCBCT----TSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGGGCC--------BS
T ss_pred c----cceeEEEEeCCCCEEEEECCcCC----CCCeeeCcEEEEEcc--CCccccceEEEEcCCCCCCCc--------cc
Confidence 3 222333434 88999986531 011123456666543 234 887766442211 11
Q ss_pred eeEEEEEEcCcEEEEeec-------CCCceEEEECCCCcEEE
Q 035860 378 QYVCSIVVAGRWMVLDTF-------RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 378 ~~~~~~~~~g~~i~l~~~-------~~~~~~~yd~~~~~~~~ 412 (440)
...+.. .+|.++++.-. ..+.+..||+++++|..
T Consensus 600 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 600 SQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640 (695)
T ss_dssp CEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred ceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence 122222 22543344211 23568999999999874
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.66 E-value=0.0017 Score=67.58 Aligned_cols=226 Identities=9% Similarity=0.004 Sum_probs=116.6
Q ss_pred EeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEee-eCCCCCEEEEEEec--c
Q 035860 154 YFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGY-DSATGTYKIVQSYP--V 230 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~-d~~~~~ykVv~~~~--~ 230 (440)
....+|-|.+.... ....+.++||.|++|..+++++..+.. ..+..+ |. ||++++- .
T Consensus 249 ~~~~~g~lyv~GG~--~~~~v~~yd~~t~~W~~~~~~~~~R~~-------------~s~~~~~dg-----~iyv~GG~~~ 308 (656)
T 1k3i_A 249 SMDGNGQIVVTGGN--DAKKTSLYDSSSDSWIPGPDMQVARGY-------------QSSATMSDG-----RVFTIGGSWS 308 (656)
T ss_dssp EECTTSCEEEECSS--STTCEEEEEGGGTEEEECCCCSSCCSS-------------CEEEECTTS-----CEEEECCCCC
T ss_pred cCCCCCCEEEeCCC--CCCceEEecCcCCceeECCCCCccccc-------------cceEEecCC-----eEEEEeCccc
Confidence 33467777666541 134799999999999999876654211 112222 21 4666641 2
Q ss_pred ccCCcceEEEEEeCCCCCcceeccCCc-ccCCCCCcccEEEcCeEEEEEecCCC-----CceEEEEEEcCCccEEEeeCC
Q 035860 231 IELSDYKIAVYTLGKDDSWRIISSSLA-LRPDVSYEFGVSAYGDMHWISFDQNN-----IHTCIFSFDFNKEEFKKIDLP 304 (440)
Q Consensus 231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~-~~~~~~~~~~v~~~G~lywl~~~~~~-----~~~~Il~fD~~~e~~~~i~lP 304 (440)
+......+++|+.. ++.|+.+..... ..........+..+|.+|.+...+.. ....+..||+.++.|.....+
T Consensus 309 ~~~~~~~~e~yd~~-t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~ 387 (656)
T 1k3i_A 309 GGVFEKNGEVYSPS-SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 387 (656)
T ss_dssp SSSCCCCEEEEETT-TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred CCcccccceEeCCC-CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc
Confidence 22244679999999 999998753211 00000111133466777776643211 114789999999998643111
Q ss_pred CCC----CCCCCCCEEE---EeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeE--EeecCCCCCcccccc
Q 035860 305 IDC----NMEPRSPSLI---NLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAY--KISTDQDGDRIEEED 375 (440)
Q Consensus 305 ~~~----~~~~~~~~L~---~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~--~i~~~~~~~~~~~~~ 375 (440)
... ........-+ ..+|+|+++.................|++.+- ....|+++. .|+.. +
T Consensus 388 ~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~mp~~---------R 456 (656)
T 1k3i_A 388 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNTVFASNGLYFA---------R 456 (656)
T ss_dssp CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEEEECTTCCSSC---------C
T ss_pred cccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCeeEEccCCCCCC---------c
Confidence 100 0000111222 24789999986431000000112234555543 245798764 33321 1
Q ss_pred ceeeEEEEEEcCcEEEEeecC----------CCceEEEECCCCcEEE
Q 035860 376 FFQYVCSIVVAGRWMVLDTFR----------HDNKFVLDLENDDCHL 412 (440)
Q Consensus 376 ~~~~~~~~~~~g~~i~l~~~~----------~~~~~~yd~~~~~~~~ 412 (440)
..... .+..+|.++++.-.. ...+.+||+++++|..
T Consensus 457 ~~~~~-~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 457 TFHTS-VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp BSCEE-EECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred ccCCe-EECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 11111 121255544442111 2457999999999875
No 22
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.66 E-value=1.6e-05 Score=72.57 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHhhhcc
Q 035860 42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATE 90 (440)
Q Consensus 42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~~~~~ 90 (440)
..||+|++..||+.|++++|+|+.+|||+|+.+..++.-.+.++.+..+
T Consensus 6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54 (312)
T ss_dssp HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence 5799999999999999999999999999999999999988887776544
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.63 E-value=0.00032 Score=73.03 Aligned_cols=203 Identities=6% Similarity=-0.079 Sum_probs=110.8
Q ss_pred EEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccc------cCCcceEEEEEeCCC
Q 035860 174 VHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVI------ELSDYKIAVYTLGKD 246 (440)
Q Consensus 174 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~------~~~~~~~~Vyss~~t 246 (440)
+...+|.+++|..+++++.. . . +..+.+..+ ||+.++ ... ......+++|+.. +
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~---~------------~-~~av~~~~g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t 228 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIV---P------------A-AAAIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPS-T 228 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSC---C------------S-EEEEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTT-T
T ss_pred cccCCCCCCeeeeeccCCCC---c------------e-eEEEEecCC--EEEEEecccccccccCCCCeEEEEEEeCC-C
Confidence 34568999999987765542 1 1 222222111 566654 111 1122368999999 9
Q ss_pred CCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe-CCeEE
Q 035860 247 DSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL-RGNLA 324 (440)
Q Consensus 247 ~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~ 324 (440)
+.|+.+..+|......+....+..||.+|-+..... ..+..||+.+++|..+ ++|... .....+.+ +|+|+
T Consensus 229 ~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~---~~v~~yd~~t~~W~~~~~~~~~R----~~~s~~~~~dg~iy 301 (656)
T 1k3i_A 229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVAR----GYQSSATMSDGRVF 301 (656)
T ss_dssp CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSCC----SSCEEEECTTSCEE
T ss_pred CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC---CceEEecCcCCceeECCCCCccc----cccceEEecCCeEE
Confidence 999998766553333332112346899998876442 2699999999999987 344322 45567788 89999
Q ss_pred EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCC-Cc---cccccceeeEEEEEEcCcEEEEeecCCCce
Q 035860 325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDG-DR---IEEEDFFQYVCSIVVAGRWMVLDTFRHDNK 400 (440)
Q Consensus 325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~-~~---~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~ 400 (440)
++..... .....-++|+.+-. ...|+.+..+...++. .. .....-..++.+. .+|. ++.. ...+.+
T Consensus 302 v~GG~~~-----~~~~~~~~e~yd~~--t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~-~~~~-~~~~~v 371 (656)
T 1k3i_A 302 TIGGSWS-----GGVFEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGS-VFQA-GPSTAM 371 (656)
T ss_dssp EECCCCC-----SSSCCCCEEEEETT--TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGC-EEEC-CSSSEE
T ss_pred EEeCccc-----CCcccccceEeCCC--CCcceeCCCccccccccccccceeecCCceEEEEC-CCCc-EEEe-cCccce
Confidence 9987321 11112234444432 4579886322111111 00 0000001122221 1333 3322 223578
Q ss_pred EEEECCCCcEEE
Q 035860 401 FVLDLENDDCHL 412 (440)
Q Consensus 401 ~~yd~~~~~~~~ 412 (440)
.+||+++++|+.
T Consensus 372 ~~yd~~~~~w~~ 383 (656)
T 1k3i_A 372 NWYYTSGSGDVK 383 (656)
T ss_dssp EEEECSTTCEEE
T ss_pred eeeecCCcceee
Confidence 999999999764
No 24
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.31 E-value=5.3e-05 Score=71.73 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=37.8
Q ss_pred ccCCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhH
Q 035860 39 LCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF 80 (440)
Q Consensus 39 ~~~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F 80 (440)
.....||+|++.+||.+|+.+++++++.|||+|+.++.++..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 335899999999999999999999999999999999877653
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.30 E-value=0.0038 Score=65.27 Aligned_cols=175 Identities=9% Similarity=-0.025 Sum_probs=104.9
Q ss_pred cEEeee--ccEEEeeecCCC---cceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEE
Q 035860 152 PIYFVA--YGFICFGESSCH---VKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQ 226 (440)
Q Consensus 152 ~i~~s~--~GLlcl~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~ 226 (440)
...... +|-|.+..+... ....+.++||.|++|..+++++..... + +...-. +=+|+.
T Consensus 443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-------------h-~~~~~~---~~~iyv 505 (695)
T 2zwa_A 443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-------------H-SACSLP---DGNVLI 505 (695)
T ss_dssp CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-------------C-EEEECT---TSCEEE
T ss_pred eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-------------c-eEEEEc---CCEEEE
Confidence 334444 776655543211 235789999999999999877654211 1 222210 114666
Q ss_pred EeccccCCcceEEEEEeCCCCCcceecc---CCcccCCCCCcccEEEc---CeEEEEEecCCCC---ceEEEEEEcCCcc
Q 035860 227 SYPVIELSDYKIAVYTLGKDDSWRIISS---SLALRPDVSYEFGVSAY---GDMHWISFDQNNI---HTCIFSFDFNKEE 297 (440)
Q Consensus 227 ~~~~~~~~~~~~~Vyss~~t~~W~~~~~---~p~~~~~~~~~~~v~~~---G~lywl~~~~~~~---~~~Il~fD~~~e~ 297 (440)
++-.... . .+++|+.. ++.|..+.. +|...... .++.++ |.+|.+....... ...+..||+.+.+
T Consensus 506 ~GG~~~~-~-~v~~yd~~-t~~W~~~~~~g~~p~~r~~~---~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 506 LGGVTEG-P-AMLLYNVT-EEIFKDVTPKDEFFQNSLVS---AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCSS-C-SEEEEETT-TTEEEECCCSSGGGGSCCBS---CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCCCCC-C-CEEEEECC-CCceEEccCCCCCCCcccce---eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 6411111 1 89999999 999999875 44322211 146667 8899987653221 2589999999999
Q ss_pred ------EEEe-eCCCCCCCCCCCCEEEEeC-CeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccc
Q 035860 298 ------FKKI-DLPIDCNMEPRSPSLINLR-GNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWS 357 (440)
Q Consensus 298 ------~~~i-~lP~~~~~~~~~~~L~~~~-G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~ 357 (440)
|..+ +.|.. .. .....+..+ |+|++++..... ......-+||+++-. ...|+
T Consensus 580 w~~~~~W~~~~~~p~~-~R--~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~v~~yd~~--t~~W~ 639 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLF-QR--YGSQIKYITPRKLLIVGGTSPS---GLFDRTNSIISLDPL--SETLT 639 (695)
T ss_dssp SSCCEEEEEEEECGGG-CC--BSCEEEEEETTEEEEECCBCSS---CCCCTTTSEEEEETT--TTEEE
T ss_pred cccceEEEEcCCCCCC-Cc--ccceEEEeCCCEEEEECCccCC---CCCCCCCeEEEEECC--CCeEE
Confidence 8777 33321 11 445677788 999999865410 000123457777653 46898
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.28 E-value=0.00077 Score=68.91 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHhcCC-cccceeeeccccchhhh
Q 035860 41 SMEFPSNIIYNILLRQP-VKVLLRFRCVSKTWSNI 74 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP-~~sL~R~r~VCK~W~~l 74 (440)
...||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 37899999999999999 99999999999999988
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.98 E-value=0.0014 Score=67.08 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHHHhcC-Ccccceeeeccccchhhh
Q 035860 41 SMEFPSNIIYNILLRQ-PVKVLLRFRCVSKTWSNI 74 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RL-P~~sL~R~r~VCK~W~~l 74 (440)
...||||++.+||.+| |.+++.++..|||+|+.+
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 3689999999999999 899999999999999988
No 28
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=91.82 E-value=6.5 Score=34.77 Aligned_cols=157 Identities=10% Similarity=0.004 Sum_probs=93.3
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSF 291 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~f 291 (440)
|+.|+. . .+. . ..+......+.+++.. ++.=.....++.. .+. ..-...++.+|-++... ..+..|
T Consensus 25 GL~~~~---~-~Ly-e-stG~~g~S~v~~vD~~-tgkv~~~~~l~~~-~fg--eGi~~~~~~ly~ltw~~----~~v~v~ 90 (243)
T 3mbr_X 25 GLFYLR---G-HLY-E-STGETGRSSVRKVDLE-TGRILQRAEVPPP-YFG--AGIVAWRDRLIQLTWRN----HEGFVY 90 (243)
T ss_dssp EEEEET---T-EEE-E-EECCTTSCEEEEEETT-TCCEEEEEECCTT-CCE--EEEEEETTEEEEEESSS----SEEEEE
T ss_pred cEEEEC---C-EEE-E-ECCCCCCceEEEEECC-CCCEEEEEeCCCC-cce--eEEEEeCCEEEEEEeeC----CEEEEE
Confidence 788875 2 122 2 1233345788999999 8754333333321 111 11345678899998777 689999
Q ss_pred EcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCc
Q 035860 292 DFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDR 370 (440)
Q Consensus 292 D~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~ 370 (440)
|..+.+- ..++.|. ....|..-+++|++.... . .|++++-. .-..+.+|+......
T Consensus 91 D~~tl~~~~ti~~~~------~Gwglt~dg~~L~vSdgs----------~--~l~~iDp~----t~~~~~~I~V~~~g~- 147 (243)
T 3mbr_X 91 DLATLTPRARFRYPG------EGWALTSDDSHLYMSDGT----------A--VIRKLDPD----TLQQVGSIKVTAGGR- 147 (243)
T ss_dssp ETTTTEEEEEEECSS------CCCEEEECSSCEEEECSS----------S--EEEEECTT----TCCEEEEEECEETTE-
T ss_pred ECCcCcEEEEEeCCC------CceEEeeCCCEEEEECCC----------C--eEEEEeCC----CCeEEEEEEEccCCc-
Confidence 9987554 5667664 234566556688877532 3 37777642 344556666542110
Q ss_pred cccccceeeEEEEEE-cCcEEEEeecCCCceEEEECCCCcEE
Q 035860 371 IEEEDFFQYVCSIVV-AGRWMVLDTFRHDNKFVLDLENDDCH 411 (440)
Q Consensus 371 ~~~~~~~~~~~~~~~-~g~~i~l~~~~~~~~~~yd~~~~~~~ 411 (440)
.+..+..+.. +| .||...+..+.+.+.|++++++.
T Consensus 148 -----~~~~lNeLe~~~G-~lyanvw~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 148 -----PLDNLNELEWVNG-ELLANVWLTSRIARIDPASGKVV 183 (243)
T ss_dssp -----ECCCEEEEEEETT-EEEEEETTTTEEEEECTTTCBEE
T ss_pred -----ccccceeeEEeCC-EEEEEECCCCeEEEEECCCCCEE
Confidence 0011111112 45 48888888889999999999953
No 29
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=89.18 E-value=12 Score=33.46 Aligned_cols=140 Identities=9% Similarity=0.013 Sum_probs=83.2
Q ss_pred CcceEEEEEeCCCCCcceeccCCcccCCCCCccc-EEEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCC
Q 035860 234 SDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFG-VSAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEP 311 (440)
Q Consensus 234 ~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~-v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~ 311 (440)
....+.+++.. ++.=.....++.. .+. .+ ...++.+|-++... ..+.+||.++.+- ..++.|.
T Consensus 63 g~S~v~~vD~~-Tgkv~~~~~l~~~-~Fg---eGit~~g~~ly~ltw~~----~~v~v~D~~t~~~~~ti~~~~------ 127 (262)
T 3nol_A 63 GRSSIRKVDIE-SGKTLQQIELGKR-YFG---EGISDWKDKIVGLTWKN----GLGFVWNIRNLRQVRSFNYDG------ 127 (262)
T ss_dssp TEEEEEEECTT-TCCEEEEEECCTT-CCE---EEEEEETTEEEEEESSS----SEEEEEETTTCCEEEEEECSS------
T ss_pred CCceEEEEECC-CCcEEEEEecCCc-cce---eEEEEeCCEEEEEEeeC----CEEEEEECccCcEEEEEECCC------
Confidence 35678899998 8754322223221 111 13 35677898888766 6899999987554 5677764
Q ss_pred CCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEE-EcCcEE
Q 035860 312 RSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIV-VAGRWM 390 (440)
Q Consensus 312 ~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~g~~i 390 (440)
....|..-+++|++.... . .||+++-. .-..+.+|+...-.. .+..+..+. .+| .|
T Consensus 128 eG~glt~dg~~L~~SdGs----------~--~i~~iDp~----T~~v~~~I~V~~~g~------~~~~lNELe~~~G-~l 184 (262)
T 3nol_A 128 EGWGLTHNDQYLIMSDGT----------P--VLRFLDPE----SLTPVRTITVTAHGE------ELPELNELEWVDG-EI 184 (262)
T ss_dssp CCCCEEECSSCEEECCSS----------S--EEEEECTT----TCSEEEEEECEETTE------ECCCEEEEEEETT-EE
T ss_pred CceEEecCCCEEEEECCC----------C--eEEEEcCC----CCeEEEEEEeccCCc------cccccceeEEECC-EE
Confidence 123455445577766421 2 47888642 344566776542110 001111111 155 58
Q ss_pred EEeecCCCceEEEECCCCcEE
Q 035860 391 VLDTFRHDNKFVLDLENDDCH 411 (440)
Q Consensus 391 ~l~~~~~~~~~~yd~~~~~~~ 411 (440)
+...+..+.+...|++++++.
T Consensus 185 yan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEE
T ss_pred EEEEccCCeEEEEECCCCcEE
Confidence 888888889999999999964
No 30
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=89.11 E-value=12 Score=33.57 Aligned_cols=135 Identities=8% Similarity=0.060 Sum_probs=80.5
Q ss_pred EEEEEeCCCCCcceeccCCcccCCCCCcccE-EEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCE
Q 035860 238 IAVYTLGKDDSWRIISSSLALRPDVSYEFGV-SAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPS 315 (440)
Q Consensus 238 ~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~ 315 (440)
+.+++.. ++.=.... ++.. .+. .|+ ..++.+|-++... ..+.+||.++.+- ..|+.+. ....
T Consensus 77 v~~iD~~-Tgkv~~~~-l~~~-~Fg---eGit~~g~~Ly~ltw~~----~~v~V~D~~Tl~~~~ti~~~~------eGwG 140 (268)
T 3nok_A 77 LRQLSLE-SAQPVWME-RLGN-IFA---EGLASDGERLYQLTWTE----GLLFTWSGMPPQRERTTRYSG------EGWG 140 (268)
T ss_dssp EEECCSS-CSSCSEEE-ECTT-CCE---EEEEECSSCEEEEESSS----CEEEEEETTTTEEEEEEECSS------CCCC
T ss_pred EEEEECC-CCcEEeEE-CCCC-cce---eEEEEeCCEEEEEEccC----CEEEEEECCcCcEEEEEeCCC------ceeE
Confidence 7888888 77543222 3321 111 134 4567788887766 6899999987554 5667654 2234
Q ss_pred EEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEE-EcCcEEEEee
Q 035860 316 LINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIV-VAGRWMVLDT 394 (440)
Q Consensus 316 L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~l~~ 394 (440)
|..-+++|++... . . .|++++-. .=..+.+|+....... +..+..+. .+| .|+...
T Consensus 141 Lt~Dg~~L~vSdG-s---------~--~l~~iDp~----T~~v~~~I~V~~~g~~------v~~lNeLe~~dG-~lyanv 197 (268)
T 3nok_A 141 LCYWNGKLVRSDG-G---------T--MLTFHEPD----GFALVGAVQVKLRGQP------VELINELECANG-VIYANI 197 (268)
T ss_dssp EEEETTEEEEECS-S---------S--EEEEECTT----TCCEEEEEECEETTEE------CCCEEEEEEETT-EEEEEE
T ss_pred EecCCCEEEEECC-C---------C--EEEEEcCC----CCeEEEEEEeCCCCcc------cccccccEEeCC-EEEEEE
Confidence 6655667777653 1 2 57777642 3345666665431110 01111111 155 588888
Q ss_pred cCCCceEEEECCCCcEE
Q 035860 395 FRHDNKFVLDLENDDCH 411 (440)
Q Consensus 395 ~~~~~~~~yd~~~~~~~ 411 (440)
+..+.+...|++++++.
T Consensus 198 w~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVV 214 (268)
T ss_dssp TTCSEEEEECTTTCBEE
T ss_pred CCCCeEEEEeCCCCcEE
Confidence 88889999999999953
No 31
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=88.71 E-value=8.1 Score=35.34 Aligned_cols=122 Identities=8% Similarity=0.079 Sum_probs=65.5
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCccEEEeeC-CCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEe
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDL-PIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVL 347 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~l-P~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l 347 (440)
+|.+|........ ..|..||+.+++...+.. +.... ....|... +|+ |++..... ..+.+|.+
T Consensus 50 dg~l~~~~~~~~~--~~v~~~~~~~g~~~~~~~~~~~~~---~p~~~a~spdg~~l~~~~~~~---------~~v~v~~~ 115 (347)
T 3hfq_A 50 KDCLYSVDKEDDE--GGIAAWQIDGQTAHKLNTVVAPGT---PPAYVAVDEARQLVYSANYHK---------GTAEVMKI 115 (347)
T ss_dssp TCEEEEEEEETTE--EEEEEEEEETTEEEEEEEEEEESC---CCSEEEEETTTTEEEEEETTT---------TEEEEEEE
T ss_pred CCeEEEEEecCCC--ceEEEEEecCCcEEEeeeeecCCC---CCEEEEECCCCCEEEEEeCCC---------CEEEEEEe
Confidence 6888777764111 489999998887766532 22111 23345544 465 55555333 78999999
Q ss_pred eccCCCcccceeEEeecCCCCCccccccceeeE-EEEEEcCcEEEEeecCCCceEEEECC-CCcEE
Q 035860 348 KDHYERNEWSKAYKISTDQDGDRIEEEDFFQYV-CSIVVAGRWMVLDTFRHDNKFVLDLE-NDDCH 411 (440)
Q Consensus 348 ~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~l~~~~~~~~~~yd~~-~~~~~ 411 (440)
+..| ....+..+........ .......+. .....+|+ +++.....+.+.+||+. +++..
T Consensus 116 ~~~g---~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~ 176 (347)
T 3hfq_A 116 AADG---ALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLS 176 (347)
T ss_dssp CTTS---CEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEE
T ss_pred CCCC---CeeecceeecCCCCCC-ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEE
Confidence 7532 3444555543221110 000000111 12334677 77766655678899988 55543
No 32
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=87.23 E-value=20 Score=33.82 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=78.1
Q ss_pred eeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860 156 VAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD 235 (440)
Q Consensus 156 s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 235 (440)
|.+++|.+... ..++|||..|++...+-..... .. . +.++.|.+. +.|-++.- ..
T Consensus 114 S~~n~lAvgld-----~tV~lWd~~tg~~~~~~~~~~~--~~---~--------V~sv~fspd-g~~lasgs------~D 168 (420)
T 4gga_A 114 SSGNVLAVALD-----NSVYLWSASSGDILQLLQMEQP--GE---Y--------ISSVAWIKE-GNYLAVGT------SS 168 (420)
T ss_dssp CTTSEEEEEET-----TEEEEEETTTCCEEEEEECCST--TC---C--------EEEEEECTT-SSEEEEEE------TT
T ss_pred CCCCEEEEEeC-----CEEEEEECCCCCEEEEEEecCC--CC---c--------EEEEEECCC-CCEEEEEE------CC
Confidence 45677766655 7899999999987654322111 00 1 347777763 44433321 24
Q ss_pred ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCE
Q 035860 236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPS 315 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~ 315 (440)
-.+.||+.. ++.- +..+.. ....-..+..+|.+-..+..+ ..+..+|..........+..... ....
T Consensus 169 g~v~iWd~~-~~~~--~~~~~~---h~~~v~~~s~~~~~l~sgs~d----~~i~~~d~~~~~~~~~~~~~h~~---~~~~ 235 (420)
T 4gga_A 169 AEVQLWDVQ-QQKR--LRNMTS---HSARVGSLSWNSYILSSGSRS----GHIHHHDVRVAEHHVATLSGHSQ---EVCG 235 (420)
T ss_dssp SCEEEEETT-TTEE--EEEECC---CSSCEEEEEEETTEEEEEETT----SEEEEEETTSSSCEEEEEECCSS---CEEE
T ss_pred CeEEEEEcC-CCcE--EEEEeC---CCCceEEEeeCCCEEEEEeCC----CceeEeeecccceeeEEeccccc---ceee
Confidence 568899988 6632 111111 000111445566554444444 47888888765544333322111 1122
Q ss_pred EEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860 316 LINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 316 L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
+... .|.+.+....+ ..+.||-+..
T Consensus 236 ~~~~~~g~~l~s~~~D---------~~v~i~~~~~ 261 (420)
T 4gga_A 236 LRWAPDGRHLASGGND---------NLVNVWPSAP 261 (420)
T ss_dssp EEECTTSSEEEEEETT---------SCEEEEESSC
T ss_pred eeecCCCCeeeeeecc---------ccceEEeecc
Confidence 2222 45655555444 6789998765
No 33
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=87.09 E-value=15 Score=34.04 Aligned_cols=176 Identities=10% Similarity=0.072 Sum_probs=89.8
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...+.|||..+++....-..... ..++.+++.. .+ ++... ...-.+.+|+.. ++.-.
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~~----------------~~~~~~s~dg-~~-l~~~~----~~d~~i~v~d~~-~~~~~ 67 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGSN----------------PMGAVISPDG-TK-VYVAN----AHSNDVSIIDTA-TNNVI 67 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS----------------EEEEEECTTS-SE-EEEEE----GGGTEEEEEETT-TTEEE
T ss_pred CCEEEEEECCCCeEEEEeecCCC----------------cceEEECCCC-CE-EEEEC----CCCCeEEEEECC-CCeEE
Confidence 47899999998876542111110 2266676643 33 32222 123478889988 76543
Q ss_pred eeccCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe-CCe-EE
Q 035860 251 IISSSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL-RGN-LA 324 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~-~G~-L~ 324 (440)
..-.... . -.++.+ +|. +|.....+ ..|..+|+.+.+.... .... ....+... +|+ |+
T Consensus 68 ~~~~~~~----~--v~~~~~spdg~~l~~~~~~~----~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 68 ATVPAGS----S--PQGVAVSPDGKQVYVTNMAS----STLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEECSS----S--EEEEEECTTSSEEEEEETTT----TEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEE
T ss_pred EEEECCC----C--ccceEECCCCCEEEEEECCC----CEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEE
Confidence 2211111 0 012222 355 44443333 4799999998766433 3221 11233333 455 44
Q ss_pred EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEE
Q 035860 325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLD 404 (440)
Q Consensus 325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd 404 (440)
+....+ ..+.+|-++.. ..+..+..... ...+ ....+|+.+++.......+.+||
T Consensus 132 ~~~~~~---------~~v~~~d~~~~------~~~~~~~~~~~---------~~~~-~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 132 VTNNGD---------KTVSVINTVTK------AVINTVSVGRS---------PKGI-AVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp EEETTT---------TEEEEEETTTT------EEEEEEECCSS---------EEEE-EECTTSSEEEEEETTTTEEEEEE
T ss_pred EEeCCC---------CEEEEEECCCC------cEEEEEecCCC---------cceE-EECCCCCEEEEEeCCCCEEEEEE
Confidence 554333 68999976531 22333332210 0111 22236776766555556788999
Q ss_pred CCCCcE
Q 035860 405 LENDDC 410 (440)
Q Consensus 405 ~~~~~~ 410 (440)
+.+++.
T Consensus 187 ~~~~~~ 192 (391)
T 1l0q_A 187 TVTNSV 192 (391)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 998874
No 34
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=84.97 E-value=20 Score=31.61 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=72.3
Q ss_pred cE-EEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEE
Q 035860 267 GV-SAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEI 344 (440)
Q Consensus 267 ~v-~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~I 344 (440)
|+ +.+|.||--+..... ..|..+|+++++- ..+++|... ....+...+++|+++...+ . .+
T Consensus 25 GL~~~~~~LyestG~~g~--S~v~~vD~~tgkv~~~~~l~~~~----fgeGi~~~~~~ly~ltw~~---------~--~v 87 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETGR--SSVRKVDLETGRILQRAEVPPPY----FGAGIVAWRDRLIQLTWRN---------H--EG 87 (243)
T ss_dssp EEEEETTEEEEEECCTTS--CEEEEEETTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSS---------S--EE
T ss_pred cEEEECCEEEEECCCCCC--ceEEEEECCCCCEEEEEeCCCCc----ceeEEEEeCCEEEEEEeeC---------C--EE
Confidence 55 455666665554322 4899999998877 467888744 2234667788999997543 3 45
Q ss_pred EEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 345 WVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 345 W~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
|+.+- ..-.++.+|+... ..+ -+| .+|+.+++.+. ++++.++|+++.+.
T Consensus 88 ~v~D~----~tl~~~~ti~~~~-------~Gw--glt---~dg~~L~vSdg-s~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 88 FVYDL----ATLTPRARFRYPG-------EGW--ALT---SDDSHLYMSDG-TAVIRKLDPDTLQQ 136 (243)
T ss_dssp EEEET----TTTEEEEEEECSS-------CCC--EEE---ECSSCEEEECS-SSEEEEECTTTCCE
T ss_pred EEEEC----CcCcEEEEEeCCC-------Cce--EEe---eCCCEEEEECC-CCeEEEEeCCCCeE
Confidence 66653 3467788888752 111 222 36777777664 67899999999874
No 35
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=83.03 E-value=46 Score=34.39 Aligned_cols=127 Identities=9% Similarity=0.083 Sum_probs=63.0
Q ss_pred eEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--c--CeEEEEEecCCCCc
Q 035860 210 HFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--Y--GDMHWISFDQNNIH 285 (440)
Q Consensus 210 ~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~--G~lywl~~~~~~~~ 285 (440)
+.++.+.+..+.-.++... ..-.+.+|+.. ++.|..+........ . -..+.+ + |.+...+..+
T Consensus 56 V~~l~~s~~~~~~~l~s~s-----~Dg~I~vwd~~-~~~~~~~~~~~~h~~-~--V~~v~~sp~~~~~~l~sgs~d---- 122 (753)
T 3jro_A 56 VWRVDWAHPKFGTILASCS-----YDGKVLIWKEE-NGRWSQIAVHAVHSA-S--VNSVQWAPHEYGPLLLVASSD---- 122 (753)
T ss_dssp EEEEEECCTTSCSEEEEEE-----TTSCEEEEEEE-TTEEEEEEEECCCSS-C--EEEEEECCGGGCSEEEEEETT----
T ss_pred eEEEEecCCCCCCEEEEEe-----CCCeEEEEECC-CCcccccccccCCCC-C--eEEEEECCCCCCCEEEEEeCC----
Confidence 3477776654232333332 24568999999 888766553322000 0 002222 2 4444444444
Q ss_pred eEEEEEEcCCccEE-EeeCCCCCCCCCCCCEEEEe--------------CCeEEEEEcCCCCCCCCCCccEEEEEEeecc
Q 035860 286 TCIFSFDFNKEEFK-KIDLPIDCNMEPRSPSLINL--------------RGNLALVTFPTDDYDGDTEYIWIEIWVLKDH 350 (440)
Q Consensus 286 ~~Il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~--------------~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~ 350 (440)
..|..+|+.+..-. .+.+..... ....+... +|.+.++...+ ..+.||-+...
T Consensus 123 g~I~vwdl~~~~~~~~~~~~~~~~---~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~ 190 (753)
T 3jro_A 123 GKVSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSD 190 (753)
T ss_dssp SEEEEEECCSSSCCCCEEEECCSS---CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETT
T ss_pred CcEEEEEeecCCCcceeEeecCCC---ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCC
Confidence 47888998776221 111111000 11112221 35555555544 67999999863
Q ss_pred CCCcccceeEEee
Q 035860 351 YERNEWSKAYKIS 363 (440)
Q Consensus 351 g~~~~W~~~~~i~ 363 (440)
...+.....+.
T Consensus 191 --~~~~~~~~~~~ 201 (753)
T 3jro_A 191 --AQTYVLESTLE 201 (753)
T ss_dssp --TTEEEEEEEEC
T ss_pred --cccceeeeeec
Confidence 34555555554
No 36
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=83.03 E-value=25 Score=31.31 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=70.7
Q ss_pred EEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEe
Q 035860 269 SAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVL 347 (440)
Q Consensus 269 ~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l 347 (440)
+.+|.||--+..... ..|..+|+++++- ..+++|+.. ....+...+++|+++...+ . .+|+.
T Consensus 50 ~~~~~LyestG~~g~--S~v~~vD~~Tgkv~~~~~l~~~~----FgeGit~~g~~ly~ltw~~---------~--~v~v~ 112 (262)
T 3nol_A 50 YRNGYFYESTGLNGR--SSIRKVDIESGKTLQQIELGKRY----FGEGISDWKDKIVGLTWKN---------G--LGFVW 112 (262)
T ss_dssp EETTEEEEEEEETTE--EEEEEECTTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSS---------S--EEEEE
T ss_pred EECCEEEEECCCCCC--ceEEEEECCCCcEEEEEecCCcc----ceeEEEEeCCEEEEEEeeC---------C--EEEEE
Confidence 457777776655321 4899999998876 566887643 2234667788999987543 3 45666
Q ss_pred eccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 348 KDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 348 ~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
+- .+-.++.+|+... .+ + .+| .+|+.+++.+. .+.+.++|+++.+.
T Consensus 113 D~----~t~~~~~ti~~~~-eG------~--glt---~dg~~L~~SdG-s~~i~~iDp~T~~v 158 (262)
T 3nol_A 113 NI----RNLRQVRSFNYDG-EG------W--GLT---HNDQYLIMSDG-TPVLRFLDPESLTP 158 (262)
T ss_dssp ET----TTCCEEEEEECSS-CC------C--CEE---ECSSCEEECCS-SSEEEEECTTTCSE
T ss_pred EC----ccCcEEEEEECCC-Cc------e--EEe---cCCCEEEEECC-CCeEEEEcCCCCeE
Confidence 53 3466778888743 11 1 122 36776777654 57899999999874
No 37
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=82.91 E-value=26 Score=31.38 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=96.6
Q ss_pred eccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcc
Q 035860 157 AYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDY 236 (440)
Q Consensus 157 ~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~ 236 (440)
..+.+.+.... ...+.|||+.|++....-..... .. ++.+++..+ + ++.... ..-
T Consensus 8 ~~~~~~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~---------------~~-~~~~s~dg~-~-l~~~~~----~~~ 62 (331)
T 3u4y_A 8 TSNFGIVVEQH---LRRISFFSTDTLEILNQITLGYD---------------FV-DTAITSDCS-N-VVVTSD----FCQ 62 (331)
T ss_dssp CCCEEEEEEGG---GTEEEEEETTTCCEEEEEECCCC---------------EE-EEEECSSSC-E-EEEEES----TTC
T ss_pred CCCEEEEEecC---CCeEEEEeCcccceeeeEEccCC---------------cc-eEEEcCCCC-E-EEEEeC----CCC
Confidence 34455444431 47899999999987543221111 13 566666433 3 333321 133
Q ss_pred eEEEEEeCCCCCc--ceeccCCcccCCCCCcccEE--EcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCCC
Q 035860 237 KIAVYTLGKDDSW--RIISSSLALRPDVSYEFGVS--AYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNMEP 311 (440)
Q Consensus 237 ~~~Vyss~~t~~W--~~~~~~p~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~~ 311 (440)
.+.+|+.. ++.- +.+.... .+. .++. -+|...+..... +....|..+|+.+.+... ++...
T Consensus 63 ~i~~~d~~-~~~~~~~~~~~~~----~~~--~~~~~s~dg~~l~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~------ 128 (331)
T 3u4y_A 63 TLVQIETQ-LEPPKVVAIQEGQ----SSM--ADVDITPDDQFAVTVTGL-NHPFNMQSYSFLKNKFISTIPIPY------ 128 (331)
T ss_dssp EEEEEECS-SSSCEEEEEEECS----SCC--CCEEECTTSSEEEECCCS-SSSCEEEEEETTTTEEEEEEECCT------
T ss_pred eEEEEECC-CCceeEEecccCC----CCc--cceEECCCCCEEEEecCC-CCcccEEEEECCCCCeEEEEECCC------
Confidence 78888888 7764 1111110 110 0122 245533333222 111279999998876543 33322
Q ss_pred CCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccce-eEEeecCCCCCccccccceeeEEEEEEcCc
Q 035860 312 RSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK-AYKISTDQDGDRIEEEDFFQYVCSIVVAGR 388 (440)
Q Consensus 312 ~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (440)
....+... +|+ |++..... ...+.+|.++..+. .... ...++.. ..... .....+|+
T Consensus 129 ~~~~~~~spdg~~l~~~~~~~--------~~~i~~~~~~~~g~--~~~~~~~~~~~~---------~~~~~-~~~spdg~ 188 (331)
T 3u4y_A 129 DAVGIAISPNGNGLILIDRSS--------ANTVRRFKIDADGV--LFDTGQEFISGG---------TRPFN-ITFTPDGN 188 (331)
T ss_dssp TEEEEEECTTSSCEEEEEETT--------TTEEEEEEECTTCC--EEEEEEEEECSS---------SSEEE-EEECTTSS
T ss_pred CccceEECCCCCEEEEEecCC--------CceEEEEEECCCCc--EeecCCccccCC---------CCccc-eEECCCCC
Confidence 11233333 464 66665433 23399999986431 1111 1112111 00111 12334777
Q ss_pred EEEEeecCCCceEEEECCCCcE
Q 035860 389 WMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 389 ~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
.+++.....+.+.+||+++++.
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTS
T ss_pred EEEEEeCCCCeEEEEECCCCcc
Confidence 7777665556789999998774
No 38
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=81.67 E-value=32 Score=31.62 Aligned_cols=180 Identities=12% Similarity=0.069 Sum_probs=92.7
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...+.|||+.+++....-..... ..++.+++. +.+-++.. ...-.+.+|+.. ++...
T Consensus 95 ~~~v~v~d~~~~~~~~~~~~~~~----------------~~~~~~s~d-g~~l~~~~-----~~~~~v~~~d~~-~~~~~ 151 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAGTVKTGKS----------------PLGLALSPD-GKKLYVTN-----NGDKTVSVINTV-TKAVI 151 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS----------------EEEEEECTT-SSEEEEEE-----TTTTEEEEEETT-TTEEE
T ss_pred CCEEEEEECCCCeEEEEEeCCCC----------------cceEEECCC-CCEEEEEe-----CCCCEEEEEECC-CCcEE
Confidence 36899999999876543221110 236677664 33332222 124478889988 77543
Q ss_pred eeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe-CCeEEEE
Q 035860 251 IISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL-RGNLALV 326 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~lv 326 (440)
..-.... .. ..+.+ +|...+++.... ..|..+|+.+.+.... .... ....+... +|+..++
T Consensus 152 ~~~~~~~---~~---~~~~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 152 NTVSVGR---SP---KGIAVTPDGTKVYVANFDS---MSISVIDTVTNSVIDTVKVEA------APSGIAVNPEGTKAYV 216 (391)
T ss_dssp EEEECCS---SE---EEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEECSS------EEEEEEECTTSSEEEE
T ss_pred EEEecCC---Cc---ceEEECCCCCEEEEEeCCC---CEEEEEECCCCeEEEEEecCC------CccceEECCCCCEEEE
Confidence 3221111 00 12222 354444433221 4799999988765433 3221 11123333 4554444
Q ss_pred EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEE-EEEEcCcEEEEeecCCCceEEEEC
Q 035860 327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVC-SIVVAGRWMVLDTFRHDNKFVLDL 405 (440)
Q Consensus 327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~l~~~~~~~~~~yd~ 405 (440)
.... .....+.+|-++. ...+..++.... +.+ ....+|+.|++.....+.+.+||+
T Consensus 217 ~~~~------~~~~~v~~~d~~~------~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 217 TNVD------KYFNTVSMIDTGT------NKITARIPVGPD-----------PAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEEC------SSCCEEEEEETTT------TEEEEEEECCSS-----------EEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EecC------cCCCcEEEEECCC------CeEEEEEecCCC-----------ccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 4321 0136888887753 233445553211 111 223467777776555578899999
Q ss_pred CCCcEE
Q 035860 406 ENDDCH 411 (440)
Q Consensus 406 ~~~~~~ 411 (440)
.+++..
T Consensus 274 ~~~~~~ 279 (391)
T 1l0q_A 274 ATNTIT 279 (391)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 998843
No 39
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=80.15 E-value=34 Score=30.98 Aligned_cols=126 Identities=9% Similarity=0.091 Sum_probs=63.5
Q ss_pred EEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEc----CeEEEEEecCCCCce
Q 035860 211 FGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAY----GDMHWISFDQNNIHT 286 (440)
Q Consensus 211 ~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~----G~lywl~~~~~~~~~ 286 (440)
..+.+.+..+.-.++... ..-.+.+|+.. ++.|..+........ .. ..+.+. |.+...+..+ .
T Consensus 59 ~~~~~~~~~~~~~l~s~~-----~dg~v~iwd~~-~~~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~l~~~~~d----~ 125 (379)
T 3jrp_A 59 WRVDWAHPKFGTILASCS-----YDGKVLIWKEE-NGRWSQIAVHAVHSA-SV--NSVQWAPHEYGPLLLVASSD----G 125 (379)
T ss_dssp EEEEECCGGGCSEEEEEE-----TTSCEEEEEEE-TTEEEEEEEECCCSS-CE--EEEEECCGGGCSEEEEEETT----S
T ss_pred EEEEeCCCCCCCEEEEec-----cCCEEEEEEcC-CCceeEeeeecCCCc-ce--EEEEeCCCCCCCEEEEecCC----C
Confidence 366665543222333332 23568999999 888766553322000 00 022222 4444444444 4
Q ss_pred EEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEe--------------CCeEEEEEcCCCCCCCCCCccEEEEEEeeccC
Q 035860 287 CIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINL--------------RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHY 351 (440)
Q Consensus 287 ~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~--------------~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g 351 (440)
.|..+|+.+..- ..+.+..... ....+... +|.+.++...+ ..+.||-+...
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~- 192 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSD- 192 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTT---CEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETT-
T ss_pred cEEEEecCCCCceeeEEecCCCC---ceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCC-
Confidence 788899887632 2222211110 11122222 36666666544 68999999753
Q ss_pred CCcccceeEEee
Q 035860 352 ERNEWSKAYKIS 363 (440)
Q Consensus 352 ~~~~W~~~~~i~ 363 (440)
...|.....+.
T Consensus 193 -~~~~~~~~~~~ 203 (379)
T 3jrp_A 193 -AQTYVLESTLE 203 (379)
T ss_dssp -TTEEEEEEEEC
T ss_pred -CcceeeEEEEe
Confidence 34566665554
No 40
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=79.01 E-value=35 Score=30.47 Aligned_cols=194 Identities=7% Similarity=-0.056 Sum_probs=91.9
Q ss_pred ceeEEEEcc-cccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCC-
Q 035860 171 KDHVHLWNP-LRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDS- 248 (440)
Q Consensus 171 ~~~~~V~NP-~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~- 248 (440)
...+.|||. .+++...+...... . .+..+.+.+ +.+-+.. . ..-.+.+|+.. +..
T Consensus 78 dg~i~~wd~~~~~~~~~~~~~~~~---~-----------~v~~l~~~~--~~~l~s~-~-----~d~~i~iwd~~-~~~~ 134 (342)
T 1yfq_A 78 QGEILKVDLIGSPSFQALTNNEAN---L-----------GICRICKYG--DDKLIAA-S-----WDGLIEVIDPR-NYGD 134 (342)
T ss_dssp TSCEEEECSSSSSSEEECBSCCCC---S-----------CEEEEEEET--TTEEEEE-E-----TTSEEEEECHH-HHTT
T ss_pred CCeEEEEEeccCCceEeccccCCC---C-----------ceEEEEeCC--CCEEEEE-c-----CCCeEEEEccc-cccc
Confidence 478999999 88877655431011 0 134777777 4433322 2 24467778766 400
Q ss_pred ------cceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCC-cc--EEEeeCCCCCCCCCCCCEEEEe
Q 035860 249 ------WRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNK-EE--FKKIDLPIDCNMEPRSPSLINL 319 (440)
Q Consensus 249 ------W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~-e~--~~~i~lP~~~~~~~~~~~L~~~ 319 (440)
.+.+..... ...-..+.+++.....+..+ ..|..+|+.+ .. ......+... ....+...
T Consensus 135 ~~~~~~~~~~~~~~~----~~~v~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~----~i~~i~~~ 202 (342)
T 1yfq_A 135 GVIAVKNLNSNNTKV----KNKIFTMDTNSSRLIVGMNN----SQVQWFRLPLCEDDNGTIEESGLKY----QIRDVALL 202 (342)
T ss_dssp BCEEEEESCSSSSSS----CCCEEEEEECSSEEEEEEST----TEEEEEESSCCTTCCCEEEECSCSS----CEEEEEEC
T ss_pred ccccccCCeeeEEee----CCceEEEEecCCcEEEEeCC----CeEEEEECCccccccceeeecCCCC----ceeEEEEC
Confidence 111111111 00001333333322222222 3899999987 33 3333333211 22233444
Q ss_pred --CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCc-cccccceeeEEEEEEcCcEEEEeecC
Q 035860 320 --RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDR-IEEEDFFQYVCSIVVAGRWMVLDTFR 396 (440)
Q Consensus 320 --~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~l~~~~ 396 (440)
+|.+.++...+ ..+.||.++..+..........+........ .........+ ....+|..|+... .
T Consensus 203 ~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~-~ 271 (342)
T 1yfq_A 203 PKEQEGYACSSID---------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI-EFSPRHKFLYTAG-S 271 (342)
T ss_dssp SGGGCEEEEEETT---------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE-EECTTTCCEEEEE-T
T ss_pred CCCCCEEEEEecC---------CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE-EEcCCCCEEEEec-C
Confidence 46666666544 7899999976422222344445543221100 0000111111 1223566554433 3
Q ss_pred CCceEEEECCCCcE
Q 035860 397 HDNKFVLDLENDDC 410 (440)
Q Consensus 397 ~~~~~~yd~~~~~~ 410 (440)
...+.+||+.+++.
T Consensus 272 dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 272 DGIISCWNLQTRKK 285 (342)
T ss_dssp TSCEEEEETTTTEE
T ss_pred CceEEEEcCccHhH
Confidence 35788999998874
No 41
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=77.12 E-value=36 Score=31.40 Aligned_cols=113 Identities=8% Similarity=0.032 Sum_probs=61.2
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCC-----CCCCCCEEEEeCCeEEEEEcCCCCCCCCCCcc
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCN-----MEPRSPSLINLRGNLALVTFPTDDYDGDTEYI 340 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~-----~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~ 340 (440)
++..+|.+|...... .|.+||.++++.. ..+++.... .......+...+|.|++.... .
T Consensus 49 p~v~~~~v~~~~~~g-----~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~----------g 113 (376)
T 3q7m_A 49 PALADNVVYAADRAG-----LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK----------A 113 (376)
T ss_dssp CEEETTEEEEECTTS-----EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT----------S
T ss_pred cEEECCEEEEEcCCC-----eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC----------C
Confidence 788899999876555 8999999766543 234443211 000223355667777776532 2
Q ss_pred EEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE
Q 035860 341 WIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 341 ~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
. |..++....+..|... ...-. ...+. + .++.|++.+.. ..++.||.++++..|
T Consensus 114 ~--l~a~d~~tG~~~W~~~----~~~~~-------~~~p~--~--~~~~v~v~~~~-g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 114 Q--VYALNTSDGTVAWQTK----VAGEA-------LSRPV--V--SDGLVLIHTSN-GQLQALNEADGAVKW 167 (376)
T ss_dssp E--EEEEETTTCCEEEEEE----CSSCC-------CSCCE--E--ETTEEEEECTT-SEEEEEETTTCCEEE
T ss_pred E--EEEEECCCCCEEEEEe----CCCce-------EcCCE--E--ECCEEEEEcCC-CeEEEEECCCCcEEE
Confidence 3 4444432124467542 21100 00121 1 34557775443 578999999998544
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=76.93 E-value=45 Score=30.56 Aligned_cols=186 Identities=9% Similarity=0.012 Sum_probs=91.5
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...+.|||..+++....-..... .. .+.++.+.+..+.+ ++... ..-.+.+|+.. ++..+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h--~~-----------~v~~~~~~~~~~~~-l~s~~-----~d~~i~iwd~~-~~~~~ 154 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGP--GD-----------AITGMKFNQFNTNQ-LFVSS-----IRGATTLRDFS-GSVIQ 154 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCST--TC-----------BEEEEEEETTEEEE-EEEEE-----TTTEEEEEETT-SCEEE
T ss_pred CCeEEEEeCCCcccceeeecCCc--CC-----------ceeEEEeCCCCCCE-EEEEe-----CCCEEEEEECC-CCceE
Confidence 46789999988776543221111 00 13477777633333 22222 24568888888 76555
Q ss_pred eeccCCcc-cCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCe-EEEEE
Q 035860 251 IISSSLAL-RPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGN-LALVT 327 (440)
Q Consensus 251 ~~~~~p~~-~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~-L~lv~ 327 (440)
........ ....+ -...-+|.+...+..+ ..|..+|+..+....+..... ....+... +|. +.+..
T Consensus 155 ~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 155 VFAKTDSWDYWYCC--VDVSVSRQMLATGDST----GRLLLLGLDGHEIFKEKLHKA-----KVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EEECCCCSSCCEEE--EEEETTTTEEEEEETT----SEEEEEETTSCEEEEEECSSS-----CEEEEEECSSCTTEEEEE
T ss_pred EEeccCCCCCCeEE--EEECCCCCEEEEECCC----CCEEEEECCCCEEEEeccCCC-----cEEEEEECCCCCCEEEEE
Confidence 44322210 00000 0111235544444444 489999997665555543221 11223333 355 66665
Q ss_pred cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEE-cCcEEEEeecCCCceEEEECC
Q 035860 328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVV-AGRWMVLDTFRHDNKFVLDLE 406 (440)
Q Consensus 328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~l~~~~~~~~~~yd~~ 406 (440)
..+ ..+.||-+.... ..-..+..+.... ....+ .... +|..|+... ....+.+||+.
T Consensus 224 ~~d---------~~i~iwd~~~~~--~~~~~~~~~~~~~---------~v~~~-~~s~~~~~~l~~~~-~d~~i~iwd~~ 281 (383)
T 3ei3_B 224 SVD---------ATVKLWDLRNIK--DKNSYIAEMPHEK---------PVNAA-YFNPTDSTKLLTTD-QRNEIRVYSSY 281 (383)
T ss_dssp ETT---------SEEEEEEGGGCC--STTCEEEEEECSS---------CEEEE-EECTTTSCEEEEEE-SSSEEEEEETT
T ss_pred eCC---------CEEEEEeCCCCC--cccceEEEecCCC---------ceEEE-EEcCCCCCEEEEEc-CCCcEEEEECC
Confidence 544 789999997632 1223333333211 11111 1123 455444433 33578889988
Q ss_pred CCc
Q 035860 407 NDD 409 (440)
Q Consensus 407 ~~~ 409 (440)
+.+
T Consensus 282 ~~~ 284 (383)
T 3ei3_B 282 DWS 284 (383)
T ss_dssp BTT
T ss_pred CCc
Confidence 765
No 43
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=74.57 E-value=47 Score=29.63 Aligned_cols=107 Identities=7% Similarity=-0.047 Sum_probs=68.7
Q ss_pred cEE-EcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEE
Q 035860 267 GVS-AYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEI 344 (440)
Q Consensus 267 ~v~-~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~I 344 (440)
|+. .+|.||--+... ..|..+|+++++- ..+ +|+.. ....+...+++|+++...+ . .+
T Consensus 59 GL~~~~~~Ly~stG~~----g~v~~iD~~Tgkv~~~~-l~~~~----FgeGit~~g~~Ly~ltw~~---------~--~v 118 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ----GTLRQLSLESAQPVWME-RLGNI----FAEGLASDGERLYQLTWTE---------G--LL 118 (268)
T ss_dssp EEEEETTEEEEEETTT----TEEEECCSSCSSCSEEE-ECTTC----CEEEEEECSSCEEEEESSS---------C--EE
T ss_pred eEEEECCEEEEEcCCC----CEEEEEECCCCcEEeEE-CCCCc----ceeEEEEeCCEEEEEEccC---------C--EE
Confidence 554 456666655554 3699999998776 455 77633 2223666778999887543 3 45
Q ss_pred EEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 345 WVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 345 W~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
|+.+- .+-.++.+|+...- .+ -+| .+|+.+++.+ ..+.+.++|+++.+.
T Consensus 119 ~V~D~----~Tl~~~~ti~~~~e-------Gw--GLt---~Dg~~L~vSd-Gs~~l~~iDp~T~~v 167 (268)
T 3nok_A 119 FTWSG----MPPQRERTTRYSGE-------GW--GLC---YWNGKLVRSD-GGTMLTFHEPDGFAL 167 (268)
T ss_dssp EEEET----TTTEEEEEEECSSC-------CC--CEE---EETTEEEEEC-SSSEEEEECTTTCCE
T ss_pred EEEEC----CcCcEEEEEeCCCc-------ee--EEe---cCCCEEEEEC-CCCEEEEEcCCCCeE
Confidence 66653 34677788886421 11 222 3677777765 467899999999874
No 44
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=73.14 E-value=29 Score=32.86 Aligned_cols=118 Identities=10% Similarity=0.077 Sum_probs=68.2
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCccEEEe---eC-C-----CCCCCCCCCCEEEEe--CCeEEEEEcCCCCCCCCCCc
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEEFKKI---DL-P-----IDCNMEPRSPSLINL--RGNLALVTFPTDDYDGDTEY 339 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i---~l-P-----~~~~~~~~~~~L~~~--~G~L~lv~~~~~~~~~~~~~ 339 (440)
+|.++|.+..+ .|..+|+.++.-..+ .+ . ....-. ....++.. +++|++...... ......
T Consensus 237 dG~~~~vs~~g-----~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~-g~q~~a~~~~~~~lyV~~~~~~--~~~hk~ 308 (386)
T 3sjl_D 237 AGRLVWPTYTG-----KIHQIDLSSGDAKFLPAVEALTEAERADGWRPG-GWQQVAYHRALDRIYLLVDQRD--EWRHKT 308 (386)
T ss_dssp TTEEEEEBTTS-----EEEEEECTTSSCEECCCEESSCHHHHHTTEEEC-SSSCEEEETTTTEEEEEEEECC--TTCTTS
T ss_pred CCcEEEEeCCC-----EEEEEECCCCcceeecceeccccccccccccCC-CcceeeECCCCCeEEEEecccc--ccccCC
Confidence 78899988765 799999987753322 11 0 000000 11123333 357777654210 000112
Q ss_pred cEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc-EEEEeecCCCceEEEECCCCcE
Q 035860 340 IWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR-WMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 340 ~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
..=+||+++- .++..+.+|++..-. ..+.+..+|. .+|..+...+.+.+||..+++.
T Consensus 309 ~~~~V~viD~----~t~kv~~~i~vg~~~----------~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 309 ASRFVVVLDA----KTGERLAKFEMGHEI----------DSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp CEEEEEEEET----TTCCEEEEEEEEEEE----------CEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCCEEEEEEC----CCCeEEEEEECCCCc----------ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 4578999985 468888888875210 1233444665 5566555567899999999984
No 45
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=73.09 E-value=50 Score=29.31 Aligned_cols=148 Identities=10% Similarity=0.091 Sum_probs=74.8
Q ss_pred cceEEEEEeCCC-CCcceec--cCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcC--CccEE---Ee-e
Q 035860 235 DYKIAVYTLGKD-DSWRIIS--SSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFN--KEEFK---KI-D 302 (440)
Q Consensus 235 ~~~~~Vyss~~t-~~W~~~~--~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~--~e~~~---~i-~ 302 (440)
.-.+.+|+.. + +...... ..... .......+.+ +|. +|...... ..|..||+. +.++. .+ .
T Consensus 150 ~~~v~~~d~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~pdg~~l~~~~~~~----~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 150 QDRICLFTVS-DDGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELN----SSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp GTEEEEEEEC-TTSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTT----TEEEEEESSCTTSCCEEEEEEEC
T ss_pred CCEEEEEEec-CCCceeeecccccccC--CCCCcceEEECCCCCEEEEEeCCC----CEEEEEEecCCCCcEEEEeeccc
Confidence 3468899988 6 6665432 11100 0000012223 465 44444333 478889984 44443 23 2
Q ss_pred CCCCCCCCCCCC-EEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceee
Q 035860 303 LPIDCNMEPRSP-SLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQY 379 (440)
Q Consensus 303 lP~~~~~~~~~~-~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~ 379 (440)
+|...... ... .+... +|+ |++.... ...+.+|-++.. ...+..+..++..... ..
T Consensus 223 ~~~~~~~~-~~~~~i~~s~dg~~l~v~~~~---------~~~i~v~d~~~~--~~~~~~~~~~~~~~~~---------~~ 281 (343)
T 1ri6_A 223 MPENFSDT-RWAADIHITPDGRHLYACDRT---------ASLITVFSVSED--GSVLSKEGFQPTETQP---------RG 281 (343)
T ss_dssp SCTTCCSC-CCEEEEEECTTSSEEEEEETT---------TTEEEEEEECTT--SCCEEEEEEEECSSSC---------CC
T ss_pred cCcccccc-CCccceEECCCCCEEEEEecC---------CCEEEEEEEcCC--CCceEEeeeecCCCcc---------ce
Confidence 45432211 122 23333 354 5444432 378999999753 2456777677643211 01
Q ss_pred EEEEEEcCcEEEEeecCCCceEEE--ECCCCcEE
Q 035860 380 VCSIVVAGRWMVLDTFRHDNKFVL--DLENDDCH 411 (440)
Q Consensus 380 ~~~~~~~g~~i~l~~~~~~~~~~y--d~~~~~~~ 411 (440)
+ ....+|+.+++.....+.+.+| |.+++++.
T Consensus 282 ~-~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 282 F-NVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp E-EECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred E-EECCCCCEEEEecCCCCeEEEEEEcCCCceee
Confidence 1 2234677777765444567666 77777654
No 46
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=72.83 E-value=51 Score=29.24 Aligned_cols=197 Identities=11% Similarity=0.093 Sum_probs=95.2
Q ss_pred ccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcce
Q 035860 158 YGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYK 237 (440)
Q Consensus 158 ~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 237 (440)
+|-|.+.... ...++.++|.|++...+..... ..++.+++..+ ++... ...
T Consensus 24 ~~~l~~~d~~---~~~i~~~d~~~~~~~~~~~~~~-----------------~~~i~~~~dG~---l~v~~------~~~ 74 (297)
T 3g4e_A 24 SNSLLFVDIP---AKKVCRWDSFTKQVQRVTMDAP-----------------VSSVALRQSGG---YVATI------GTK 74 (297)
T ss_dssp TTEEEEEETT---TTEEEEEETTTCCEEEEECSSC-----------------EEEEEEBTTSS---EEEEE------TTE
T ss_pred CCEEEEEECC---CCEEEEEECCCCcEEEEeCCCc-----------------eEEEEECCCCC---EEEEE------CCe
Confidence 4544444331 4789999999987654432111 23777776544 22221 246
Q ss_pred EEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCeEEEEEecCC-------CCceEEEEEEcCCccEEEeeCCCCCC
Q 035860 238 IAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQN-------NIHTCIFSFDFNKEEFKKIDLPIDCN 308 (440)
Q Consensus 238 ~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~-------~~~~~Il~fD~~~e~~~~i~lP~~~~ 308 (440)
+.+|+.. ++.++.+...+....... -..+.+ +|.+|+-..... .....|..+|.... ...+. ....
T Consensus 75 l~~~d~~-~g~~~~~~~~~~~~~~~~-~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~--~~~~ 149 (297)
T 3g4e_A 75 FCALNWK-EQSAVVLATVDNDKKNNR-FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYF--DQVD 149 (297)
T ss_dssp EEEEETT-TTEEEEEEECCTTCSSEE-EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEE--EEES
T ss_pred EEEEECC-CCcEEEEEecCCCCCCCC-CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEe--eccc
Confidence 7888888 888876654322100000 013333 588766543321 01257888887643 32221 0000
Q ss_pred CCCCCCEEEEe-CC-eEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEe-ecCCCCCccccccceeeEEEEEE
Q 035860 309 MEPRSPSLINL-RG-NLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKI-STDQDGDRIEEEDFFQYVCSIVV 385 (440)
Q Consensus 309 ~~~~~~~L~~~-~G-~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~ 385 (440)
..-.+... +| .|+++.... ..+.+|-++.. +........+ ..... .....-++ +..
T Consensus 150 ---~pngi~~spdg~~lyv~~~~~---------~~i~~~~~d~~--~G~~~~~~~~~~~~~~------~~~p~g~~-~d~ 208 (297)
T 3g4e_A 150 ---ISNGLDWSLDHKIFYYIDSLS---------YSVDAFDYDLQ--TGQISNRRSVYKLEKE------EQIPDGMC-IDA 208 (297)
T ss_dssp ---BEEEEEECTTSCEEEEEEGGG---------TEEEEEEECTT--TCCEEEEEEEEECCGG------GCEEEEEE-EBT
T ss_pred ---cccceEEcCCCCEEEEecCCC---------CcEEEEeccCC--CCcccCcEEEEECCCC------CCCCCeeE-ECC
Confidence 00123333 45 466665432 56666655421 1222221111 11110 01111222 222
Q ss_pred cCcEEEEeecCCCceEEEECCCCcE
Q 035860 386 AGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 386 ~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
+| .|++..+....+..||+++++.
T Consensus 209 ~G-~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 209 EG-KLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp TS-CEEEEEETTTEEEEECTTTCCE
T ss_pred CC-CEEEEEcCCCEEEEEcCCCceE
Confidence 55 4888766656799999998874
No 47
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=70.53 E-value=65 Score=29.53 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCC--cceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCcc
Q 035860 236 YKIAVYTLGKDDS--WRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEE 297 (440)
Q Consensus 236 ~~~~Vyss~~t~~--W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~ 297 (440)
-.+..++.. ++. |+...... .. ..++..+|.+|..+... .|.+||..+++
T Consensus 113 g~l~a~d~~-tG~~~W~~~~~~~----~~--~~p~~~~~~v~v~~~~g-----~l~~~d~~tG~ 164 (376)
T 3q7m_A 113 AQVYALNTS-DGTVAWQTKVAGE----AL--SRPVVSDGLVLIHTSNG-----QLQALNEADGA 164 (376)
T ss_dssp SEEEEEETT-TCCEEEEEECSSC----CC--SCCEEETTEEEEECTTS-----EEEEEETTTCC
T ss_pred CEEEEEECC-CCCEEEEEeCCCc----eE--cCCEEECCEEEEEcCCC-----eEEEEECCCCc
Confidence 356777777 664 76533211 11 12567788887765544 89999987765
No 48
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=70.51 E-value=69 Score=29.79 Aligned_cols=192 Identities=12% Similarity=0.081 Sum_probs=96.8
Q ss_pred eeccEEEeeecCCCcceeEEEEccccccccc-CCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCC
Q 035860 156 VAYGFICFGESSCHVKDHVHLWNPLRREVLR-LPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELS 234 (440)
Q Consensus 156 s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~ 234 (440)
+.+|-+++.... ...+.+||+.+++... ++.... ...++.+++..+ + ++... ..
T Consensus 178 ~~~~~~~~s~~~---d~~v~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~-~-l~~~~----~~ 232 (433)
T 3bws_A 178 PEHNELWVSQMQ---ANAVHVFDLKTLAYKATVDLTGK----------------WSKILLYDPIRD-L-VYCSN----WI 232 (433)
T ss_dssp GGGTEEEEEEGG---GTEEEEEETTTCCEEEEEECSSS----------------SEEEEEEETTTT-E-EEEEE----TT
T ss_pred cCCCEEEEEECC---CCEEEEEECCCceEEEEEcCCCC----------------CeeEEEEcCCCC-E-EEEEe----cC
Confidence 456666555541 4789999998876433 331111 023677776433 3 22222 12
Q ss_pred cceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCeEEEEEecCCC----CceEEEEEEcCCccEEEe-eCCCCC
Q 035860 235 DYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNN----IHTCIFSFDFNKEEFKKI-DLPIDC 307 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~----~~~~Il~fD~~~e~~~~i-~lP~~~ 307 (440)
.-.+.+|+.. ++.....-.... . . .++.+ +|...+.+..... ....|..+|+.+.+.... ..+..
T Consensus 233 ~~~i~~~d~~-~~~~~~~~~~~~--~-~---~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~- 304 (433)
T 3bws_A 233 SEDISVIDRK-TKLEIRKTDKIG--L-P---RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN- 304 (433)
T ss_dssp TTEEEEEETT-TTEEEEECCCCS--E-E---EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC-
T ss_pred CCcEEEEECC-CCcEEEEecCCC--C-c---eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC-
Confidence 3478889988 765422211111 0 0 12322 4655455442111 014899999988765433 22221
Q ss_pred CCCCCCCEEEEe-CC-eEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEE
Q 035860 308 NMEPRSPSLINL-RG-NLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVV 385 (440)
Q Consensus 308 ~~~~~~~~L~~~-~G-~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 385 (440)
...+... +| .|++....+ ..+.+|-++. ...+..++.... ...+ ....
T Consensus 305 -----~~~~~~~~~g~~l~~~~~~~---------~~v~v~d~~~------~~~~~~~~~~~~---------~~~~-~~s~ 354 (433)
T 3bws_A 305 -----KRHIVSGNTENKIYVSDMCC---------SKIEVYDLKE------KKVQKSIPVFDK---------PNTI-ALSP 354 (433)
T ss_dssp -----EEEEEECSSTTEEEEEETTT---------TEEEEEETTT------TEEEEEEECSSS---------EEEE-EECT
T ss_pred -----cceEEECCCCCEEEEEecCC---------CEEEEEECCC------CcEEEEecCCCC---------CCeE-EEcC
Confidence 1122222 35 455555443 7899998763 233444543211 1111 2223
Q ss_pred cCcEEEEeecCC--------------CceEEEECCCCcE
Q 035860 386 AGRWMVLDTFRH--------------DNKFVLDLENDDC 410 (440)
Q Consensus 386 ~g~~i~l~~~~~--------------~~~~~yd~~~~~~ 410 (440)
+|+.+++..... ..+.+||+++++.
T Consensus 355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred CCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 666676654332 2789999999874
No 49
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=70.38 E-value=60 Score=29.03 Aligned_cols=206 Identities=11% Similarity=-0.042 Sum_probs=101.2
Q ss_pred eeeccEEEeeecCCCcceeEEEEccccccccc-CCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccC
Q 035860 155 FVAYGFICFGESSCHVKDHVHLWNPLRREVLR-LPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIEL 233 (440)
Q Consensus 155 ~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~ 233 (440)
...++.+.+.... ...+.++|+.|++... ++......+.. .... ...++.+++..+ +-++.-. .
T Consensus 97 s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~s~dg~-~l~~~~~----~ 161 (353)
T 3vgz_A 97 NNTTQTLWFGNTV---NSAVTAIDAKTGEVKGRLVLDDRKRTEE------VRPL-QPRELVADDATN-TVYISGI----G 161 (353)
T ss_dssp ETTTTEEEEEETT---TTEEEEEETTTCCEEEEEESCCCCCCSS------CCCC-EEEEEEEETTTT-EEEEEEE----S
T ss_pred CCCCCEEEEEecC---CCEEEEEeCCCCeeEEEEecCCCccccc------cCCC-CCceEEECCCCC-EEEEEec----C
Confidence 3344445444431 4689999999988633 43321111000 0000 123677887544 3222211 1
Q ss_pred CcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCCC
Q 035860 234 SDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEPR 312 (440)
Q Consensus 234 ~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~~ 312 (440)
....+.+|+.. ++.= +...+.....+ ....+.-+|...+.+..+ ..|..+|+.+.+.. .+..+..-... .
T Consensus 162 ~~~~i~~~d~~-~~~~--~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~-~ 232 (353)
T 3vgz_A 162 KESVIWVVDGG-NIKL--KTAIQNTGKMS-TGLALDSEGKRLYTTNAD----GELITIDTADNKILSRKKLLDDGKEH-F 232 (353)
T ss_dssp SSCEEEEEETT-TTEE--EEEECCCCTTC-CCCEEETTTTEEEEECTT----SEEEEEETTTTEEEEEEECCCSSSCC-C
T ss_pred CCceEEEEcCC-CCce--EEEecCCCCcc-ceEEECCCCCEEEEEcCC----CeEEEEECCCCeEEEEEEcCCCCCCc-c
Confidence 24567888877 6532 22121100011 101222356644444443 47889999987664 44553321110 1
Q ss_pred CCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEE
Q 035860 313 SPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWM 390 (440)
Q Consensus 313 ~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i 390 (440)
...+... +|+ |++.... ...+.+|-++. ...+..++...- . . .....+|+.+
T Consensus 233 ~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~------~~~~~~~~~~~~-------~---~-~~~s~dg~~l 286 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSK---------AAEVLVVDTRN------GNILAKVAAPES-------L---A-VLFNPARNEA 286 (353)
T ss_dssp EEEEEEETTTTEEEEEESS---------SSEEEEEETTT------CCEEEEEECSSC-------C---C-EEEETTTTEE
T ss_pred cceEEECCCCCEEEEEeCC---------CCEEEEEECCC------CcEEEEEEcCCC-------c---e-EEECCCCCEE
Confidence 1123333 454 6555432 26777776543 233445553211 0 1 1233477778
Q ss_pred EEeecCCCceEEEECCCCcE
Q 035860 391 VLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 391 ~l~~~~~~~~~~yd~~~~~~ 410 (440)
++.....+.+.+||..+++.
T Consensus 287 ~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp EEEETTTTEEEEEETTTTEE
T ss_pred EEEECCCCeEEEEECCCCeE
Confidence 88766667899999999884
No 50
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=66.97 E-value=65 Score=28.17 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=38.6
Q ss_pred eeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860 156 VAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD 235 (440)
Q Consensus 156 s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 235 (440)
|.+|+|..... ..+.|||..|++...+-..... .. .+..+.+.+. +.|-+.. . ..
T Consensus 34 S~~~~lAvg~D-----~tV~iWd~~tg~~~~~~~~~~~--~~-----------~V~~v~~~~~-~~~l~sg-s-----~D 88 (318)
T 4ggc_A 34 SSGNVLAVALD-----NSVYLWSASSGDILQLLQMEQP--GE-----------YISSVAWIKE-GNYLAVG-T-----SS 88 (318)
T ss_dssp CTTSEEEEEET-----TEEEEEETTTCCEEEEEECCST--TC-----------CEEEEEECTT-SSEEEEE-E-----TT
T ss_pred CCCCEEEEEeC-----CEEEEEECCCCCEEEEEEecCC--CC-----------eEEEEEECCC-CCEEEEE-E-----CC
Confidence 56777766544 6899999999986553221111 00 1346777764 3333322 1 24
Q ss_pred ceEEEEEeCCCCC
Q 035860 236 YKIAVYTLGKDDS 248 (440)
Q Consensus 236 ~~~~Vyss~~t~~ 248 (440)
-.+.+|+.. ++.
T Consensus 89 g~v~iw~~~-~~~ 100 (318)
T 4ggc_A 89 AEVQLWDVQ-QQK 100 (318)
T ss_dssp SEEEEEETT-TTE
T ss_pred CcEEEeecC-Cce
Confidence 467888887 654
No 51
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=66.12 E-value=72 Score=28.34 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=88.7
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccE-EEcCeEEEEEecCCCCceEEEE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGV-SAYGDMHWISFDQNNIHTCIFS 290 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~Il~ 290 (440)
|+.+++. + .+.... +......+.+++.. ++.=...-.++. .... .++ ..++.+|.++... ..+.+
T Consensus 25 Gl~~~~d-g--~Lyvst--g~~~~s~v~~iD~~-tg~v~~~i~l~~-~~fg---eGi~~~g~~lyv~t~~~----~~v~v 90 (266)
T 2iwa_A 25 GLVYAEN-D--TLFEST--GLYGRSSVRQVALQ-TGKVENIHKMDD-SYFG---EGLTLLNEKLYQVVWLK----NIGFI 90 (266)
T ss_dssp EEEECST-T--EEEEEE--CSTTTCEEEEEETT-TCCEEEEEECCT-TCCE---EEEEEETTEEEEEETTC----SEEEE
T ss_pred cEEEeCC-C--eEEEEC--CCCCCCEEEEEECC-CCCEEEEEecCC-Ccce---EEEEEeCCEEEEEEecC----CEEEE
Confidence 8888864 2 333321 22245788999998 876322211221 1111 144 3456899888766 58999
Q ss_pred EEcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCC
Q 035860 291 FDFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGD 369 (440)
Q Consensus 291 fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~ 369 (440)
+|..+.+- ..|+.+ .. ....|..-+++|++... . . .|++++- ..-....+|+......
T Consensus 91 iD~~t~~v~~~i~~g--~~---~g~glt~Dg~~l~vs~g-s---------~--~l~viD~----~t~~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ--MK---DGWGLATDGKILYGSDG-T---------S--ILYEIDP----HTFKLIKKHNVKYNGH 149 (266)
T ss_dssp EETTTTEEEEEEECC--SS---SCCEEEECSSSEEEECS-S---------S--EEEEECT----TTCCEEEEEECEETTE
T ss_pred EECCCCcEEEEEECC--CC---CeEEEEECCCEEEEECC-C---------C--eEEEEEC----CCCcEEEEEEECCCCc
Confidence 99987543 556665 11 22345544457775431 1 3 5677764 2355667777543211
Q ss_pred ccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 370 RIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 370 ~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
... ...-+.. .+| .+|...+..+.+.+.|++++++
T Consensus 150 p~~---~~nele~--~dg-~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 150 RVI---RLNELEY--ING-EVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp ECC---CEEEEEE--ETT-EEEEEETTSSEEEEEETTTCCE
T ss_pred ccc---cceeEEE--ECC-EEEEecCCCCeEEEEECCCCcE
Confidence 000 0001111 245 6888877778999999999985
No 52
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=65.96 E-value=63 Score=27.65 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=54.9
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCC-CCc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKD-DSW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t-~~W 249 (440)
...+++||+.+++...+...... +.++.+.|.. .+-++. . .-.+.+++.. + +..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~----------------v~~~~~spdg-~~l~~~-~------~~~i~~~d~~-~~~~~ 75 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPEL----------------FEAPNWSPDG-KYLLLN-S------EGLLYRLSLA-GDPSP 75 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSC----------------CEEEEECTTS-SEEEEE-E------TTEEEEEESS-SCCSC
T ss_pred ceeEEEEeCCCCceeeeccCCcc----------------eEeeEECCCC-CEEEEE-c------CCeEEEEeCC-CCCCc
Confidence 47899999999887765432111 2366677643 333222 1 3378899998 7 766
Q ss_pred ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEee
Q 035860 250 RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKID 302 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~ 302 (440)
..+........... ....-+|...............|..+|+.+.....+.
T Consensus 76 ~~~~~~~~~~~~~~--~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (297)
T 2ojh_A 76 EKVDTGFATICNND--HGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT 126 (297)
T ss_dssp EECCCTTCCCBCSC--CEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC
T ss_pred eEeccccccccccc--eEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee
Confidence 55442221001110 0122245533333321111257888898877655443
No 53
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=65.70 E-value=70 Score=30.10 Aligned_cols=136 Identities=11% Similarity=0.060 Sum_probs=66.3
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...+.|||..+++...+-..... .. .+.++.|.|..+.+ ++... ..-.+.+++.. ++.-+
T Consensus 141 dg~i~lWd~~~~~~~~~~~~~gH--~~-----------~V~~l~f~p~~~~~-l~s~s-----~D~~v~iwd~~-~~~~~ 200 (435)
T 4e54_B 141 GGDIMLWNFGIKDKPTFIKGIGA--GG-----------SITGLKFNPLNTNQ-FYASS-----MEGTTRLQDFK-GNILR 200 (435)
T ss_dssp TSCEEEECSSCCSCCEEECCCSS--SC-----------CCCEEEECSSCTTE-EEEEC-----SSSCEEEEETT-SCEEE
T ss_pred CCEEEEEECCCCCceeEEEccCC--CC-----------CEEEEEEeCCCCCE-EEEEe-----CCCEEEEeecc-CCcee
Confidence 47899999988764432211110 00 13377777755554 33221 24567888888 76554
Q ss_pred eeccCCcc-cCCCCCcccEE--EcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCC-EEEEe-CC-eEE
Q 035860 251 IISSSLAL-RPDVSYEFGVS--AYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSP-SLINL-RG-NLA 324 (440)
Q Consensus 251 ~~~~~p~~-~~~~~~~~~v~--~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~-~L~~~-~G-~L~ 324 (440)
........ .... .+. -+|.+...+..+ ..|..+|+.++....+.. ....+ .+... .| .+.
T Consensus 201 ~~~~~~~~~~~~~----~~~~~~~~~~l~~g~~d----g~i~~wd~~~~~~~~~~~------h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 201 VFASSDTINIWFC----SLDVSASSRMVVTGDNV----GNVILLNMDGKELWNLRM------HKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp EEECCSSCSCCCC----CEEEETTTTEEEEECSS----SBEEEEESSSCBCCCSBC------CSSCEEEEEECTTCSSEE
T ss_pred EEeccCCCCccEE----EEEECCCCCEEEEEeCC----CcEeeeccCcceeEEEec------ccceEEeeeecCCCceEE
Confidence 43322110 0111 222 245444444433 468888987654322221 00122 22222 34 355
Q ss_pred EEEcCCCCCCCCCCccEEEEEEeec
Q 035860 325 LVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 325 lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
+....+ ..+.||-+..
T Consensus 267 ~s~s~d---------~~v~iwd~~~ 282 (435)
T 4e54_B 267 ATASVD---------QTVKIWDLRQ 282 (435)
T ss_dssp EEEETT---------SBCCEEETTT
T ss_pred EEecCc---------ceeeEEeccc
Confidence 454433 6789998764
No 54
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=65.23 E-value=75 Score=28.22 Aligned_cols=111 Identities=7% Similarity=0.031 Sum_probs=69.4
Q ss_pred cEEEc--CeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEE
Q 035860 267 GVSAY--GDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIE 343 (440)
Q Consensus 267 ~v~~~--G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~ 343 (440)
|+.++ |.||-.+..... ..|..+|+.+.+- ..+++|... ....+...+++|++..... ..
T Consensus 25 Gl~~~~dg~Lyvstg~~~~--s~v~~iD~~tg~v~~~i~l~~~~----fgeGi~~~g~~lyv~t~~~---------~~-- 87 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGR--SSVRQVALQTGKVENIHKMDDSY----FGEGLTLLNEKLYQVVWLK---------NI-- 87 (266)
T ss_dssp EEEECSTTEEEEEECSTTT--CEEEEEETTTCCEEEEEECCTTC----CEEEEEEETTEEEEEETTC---------SE--
T ss_pred cEEEeCCCeEEEECCCCCC--CEEEEEECCCCCEEEEEecCCCc----ceEEEEEeCCEEEEEEecC---------CE--
Confidence 45443 667766543211 4899999998776 456776632 2224555677888887543 33
Q ss_pred EEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 344 IWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 344 IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
|++.+- .+-..+.+|+.. . . ..+ ++..+|+.+|+.. ..+.+.++|+++.+.
T Consensus 88 v~viD~----~t~~v~~~i~~g-~-~----~g~-----glt~Dg~~l~vs~-gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 88 GFIYDR----RTLSNIKNFTHQ-M-K----DGW-----GLATDGKILYGSD-GTSILYEIDPHTFKL 138 (266)
T ss_dssp EEEEET----TTTEEEEEEECC-S-S----SCC-----EEEECSSSEEEEC-SSSEEEEECTTTCCE
T ss_pred EEEEEC----CCCcEEEEEECC-C-C----CeE-----EEEECCCEEEEEC-CCCeEEEEECCCCcE
Confidence 555653 246777888865 1 1 111 2334777788766 567899999999874
No 55
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=62.18 E-value=1e+02 Score=28.81 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=68.8
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...+.|||..|++...--.... . .+..+.+++ . .++... ..-.+.+|+.. ++.-.
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~----~-----------~v~~l~~~~---~-~l~s~s-----~dg~i~vwd~~-~~~~~ 246 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHC----E-----------AVLHLRFNN---G-MMVTCS-----KDRSIAVWDMA-SPTDI 246 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCC----S-----------CEEEEECCT---T-EEEEEE-----TTSCEEEEECS-SSSCC
T ss_pred CCeEEEEECCCCcEEEEEcCCC----C-----------cEEEEEEcC---C-EEEEee-----CCCcEEEEeCC-CCCCc
Confidence 4789999998886533111000 0 133566653 2 233222 24568889988 65422
Q ss_pred ee-ccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCCCCCCEEEEeCCeEEEEEc
Q 035860 251 II-SSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNMEPRSPSLINLRGNLALVTF 328 (440)
Q Consensus 251 ~~-~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~~~~~~L~~~~G~L~lv~~ 328 (440)
.. ..... ....-..+..+|.....+..+ ..|..+|+.+.+... +.... ....-+..+|.+.++..
T Consensus 247 ~~~~~~~~---~~~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~l~~g~ 313 (435)
T 1p22_A 247 TLRRVLVG---HRAAVNVVDFDDKYIVSASGD----RTIKVWNTSTCEFVRTLNGHK------RGIACLQYRDRLVVSGS 313 (435)
T ss_dssp EEEEEECC---CSSCEEEEEEETTEEEEEETT----SEEEEEETTTCCEEEEEECCS------SCEEEEEEETTEEEEEE
T ss_pred eeeeEecC---CCCcEEEEEeCCCEEEEEeCC----CeEEEEECCcCcEEEEEcCCC------CcEEEEEeCCCEEEEEe
Confidence 11 11100 000011444567665555555 489999998876532 22111 22333344666666665
Q ss_pred CCCCCCCCCCccEEEEEEeec
Q 035860 329 PTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 329 ~~~~~~~~~~~~~l~IW~l~~ 349 (440)
.+ ..+.||-++.
T Consensus 314 ~d---------g~i~iwd~~~ 325 (435)
T 1p22_A 314 SD---------NTIRLWDIEC 325 (435)
T ss_dssp TT---------SCEEEEETTT
T ss_pred CC---------CeEEEEECCC
Confidence 44 6899998764
No 56
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=60.93 E-value=65 Score=29.99 Aligned_cols=112 Identities=8% Similarity=0.054 Sum_probs=59.4
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe--CCeEEEEEcCCCCCCCCCCccEEEEEEee
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL--RGNLALVTFPTDDYDGDTEYIWIEIWVLK 348 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~--~G~L~lv~~~~~~~~~~~~~~~l~IW~l~ 348 (440)
+|.++.....+ ..|..+|+.+.+......+...........-+.. +|.+.+....+ ..+.+|-++
T Consensus 133 ~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d---------~~v~~~d~~ 199 (433)
T 3bws_A 133 NTRLAIPLLED----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA---------NAVHVFDLK 199 (433)
T ss_dssp SSEEEEEBTTS----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG---------TEEEEEETT
T ss_pred CCeEEEEeCCC----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC---------CEEEEEECC
Confidence 45555544433 3699999998776543221111111022222223 56777777543 789999875
Q ss_pred ccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 349 DHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 349 ~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
.. ..+.++..... ....+ ....+|+.+++.......+.+||+.+++.
T Consensus 200 ~~------~~~~~~~~~~~--------~~~~~-~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 200 TL------AYKATVDLTGK--------WSKIL-LYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp TC------CEEEEEECSSS--------SEEEE-EEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred Cc------eEEEEEcCCCC--------CeeEE-EEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 41 23334432110 11111 22236777776655556788999998874
No 57
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=58.90 E-value=1e+02 Score=27.72 Aligned_cols=199 Identities=9% Similarity=-0.070 Sum_probs=99.6
Q ss_pred ccEEEeeecCC-CcceeEEEEccccccccc-CCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860 158 YGFICFGESSC-HVKDHVHLWNPLRREVLR-LPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD 235 (440)
Q Consensus 158 ~GLlcl~~~~~-~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 235 (440)
+|++.+..... .....+.++||.|++... ++........+ .. .. ++.++. .+ +..... ..
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg--~~-------~~-~i~~~~---~~-lyv~~~----~~ 63 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLG--DV-------AQ-SMVIRD---GI-GWIVVN----NS 63 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCB--SC-------EE-EEEEET---TE-EEEEEG----GG
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccC--cc-------ce-EEEEEC---CE-EEEEEc----CC
Confidence 45555544311 224789999999998654 21100000000 00 11 444553 22 333321 23
Q ss_pred ceEEEEEeCCCCCc-ceeccCCcccCCCCCcccEE--EcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCC
Q 035860 236 YKIAVYTLGKDDSW-RIISSSLALRPDVSYEFGVS--AYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEP 311 (440)
Q Consensus 236 ~~~~Vyss~~t~~W-~~~~~~p~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~ 311 (440)
-.+.|++.. ++.- +.+.... .+ . ++. -+|.+|...... ..|..+|+.+.+.. .++++.......
T Consensus 64 ~~v~viD~~-t~~~~~~i~~~~----~p-~--~i~~~~~g~lyv~~~~~----~~v~~iD~~t~~~~~~i~~g~~~~~~~ 131 (328)
T 3dsm_A 64 HVIFAIDIN-TFKEVGRITGFT----SP-R--YIHFLSDEKAYVTQIWD----YRIFIINPKTYEITGYIECPDMDMESG 131 (328)
T ss_dssp TEEEEEETT-TCCEEEEEECCS----SE-E--EEEEEETTEEEEEEBSC----SEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred CEEEEEECc-ccEEEEEcCCCC----CC-c--EEEEeCCCeEEEEECCC----CeEEEEECCCCeEEEEEEcCCccccCC
Confidence 468888888 7764 2332111 11 1 332 578888776333 48999999998764 566655211111
Q ss_pred CCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEE
Q 035860 312 RSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMV 391 (440)
Q Consensus 312 ~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 391 (440)
....|...+|+|++..... ...+.++-++. -..+.+|+...... .+ ....+|+ ++
T Consensus 132 ~p~~i~~~~~~lyv~~~~~--------~~~v~viD~~t------~~~~~~i~~g~~p~---------~i-~~~~dG~-l~ 186 (328)
T 3dsm_A 132 STEQMVQYGKYVYVNCWSY--------QNRILKIDTET------DKVVDELTIGIQPT---------SL-VMDKYNK-MW 186 (328)
T ss_dssp BCCCEEEETTEEEEEECTT--------CCEEEEEETTT------TEEEEEEECSSCBC---------CC-EECTTSE-EE
T ss_pred CcceEEEECCEEEEEcCCC--------CCEEEEEECCC------CeEEEEEEcCCCcc---------ce-EEcCCCC-EE
Confidence 1123444678888886421 14555554432 22334555422110 11 1122455 55
Q ss_pred EeecCC----------CceEEEECCCCcEE
Q 035860 392 LDTFRH----------DNKFVLDLENDDCH 411 (440)
Q Consensus 392 l~~~~~----------~~~~~yd~~~~~~~ 411 (440)
+..... ..+..+|.++++..
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred EEECCCccCCccccCCceEEEEECCCCeEE
Confidence 543332 57899999998854
No 58
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=57.64 E-value=1.2e+02 Score=28.50 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=40.1
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSF 291 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~f 291 (440)
|+.+|+..+ +|.+.. ...-.+++++.. ...-+.+...+.....+.. -...+|.+||..... ..|..+
T Consensus 250 glavd~~~~--~lY~aD----~~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~g--l~v~~~~lywtd~~~----~~V~~~ 316 (400)
T 3p5b_L 250 GITLDLLSG--RLYWVD----SKLHSISSIDVN-GGNRKTILEDEKRLAHPFS--LAVFEDKVFWTDIIN----EAIFSA 316 (400)
T ss_dssp EEEEETTTT--EEEEEE----TTTTEEEEEETT-SCCCEEEEECSSTTSSEEE--EEEETTEEEEEESSS----CSEEEE
T ss_pred EEEEEeCCC--EEEEEE----CCCCEEEEEeCC-CCccEEEEeCCCCCCCCEE--EEEeCCEEEEecCCC----CeEEEE
Confidence 888887655 344442 234578888877 4333333221111111211 234678999998665 579999
Q ss_pred EcCCc
Q 035860 292 DFNKE 296 (440)
Q Consensus 292 D~~~e 296 (440)
|..++
T Consensus 317 ~~~~G 321 (400)
T 3p5b_L 317 NRLTG 321 (400)
T ss_dssp ESSSC
T ss_pred EcCCC
Confidence 95544
No 59
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=57.61 E-value=1e+02 Score=27.17 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=57.7
Q ss_pred EEEcCeEEEEEec-CCCCceEEEEEEcCCccEEEeeCCCCCCCCC-CCCEE-EEeCCeEEEEEcCCCCCCCCCCccEEEE
Q 035860 268 VSAYGDMHWISFD-QNNIHTCIFSFDFNKEEFKKIDLPIDCNMEP-RSPSL-INLRGNLALVTFPTDDYDGDTEYIWIEI 344 (440)
Q Consensus 268 v~~~G~lywl~~~-~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~-~~~~L-~~~~G~L~lv~~~~~~~~~~~~~~~l~I 344 (440)
+.-||.++..... . ..|+.||...+....+.+........ ....+ ...+|.+.++.... ..+..
T Consensus 84 ~~~dG~~lv~~~~~~----~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~---------~~v~~ 150 (276)
T 3no2_A 84 ILPDGNALVAWCGHP----STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT---------SEVRE 150 (276)
T ss_dssp ECTTSCEEEEEESTT----EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT---------TEEEE
T ss_pred ECCCCCEEEEecCCC----CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC---------CEEEE
Confidence 3446777666554 3 57899998666555555543221110 11111 22356666655433 55655
Q ss_pred EEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE
Q 035860 345 WVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 345 W~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
|-.+ | +..|+... + .. .+. . ....+|+.++.. ....+++.+|++|++..|
T Consensus 151 ~d~~--G-~~~w~~~~--~--~~--------~~~-~-~~~~~g~~~v~~-~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 151 IAPN--G-QLLNSVKL--S--GT--------PFS-S-AFLDNGDCLVAC-GDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp ECTT--S-CEEEEEEC--S--SC--------CCE-E-EECTTSCEEEEC-BTTSEEEEECTTTCCEEE
T ss_pred ECCC--C-CEEEEEEC--C--CC--------ccc-e-eEcCCCCEEEEe-CCCCeEEEEeCcCCcEEE
Confidence 5543 3 34565322 1 10 001 1 222366644443 333579999999888444
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.24 E-value=1.2e+02 Score=27.96 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=70.6
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcce
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRI 251 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~ 251 (440)
..+.|||..+++...+-..... . .+..+.+.+ .+.+-++.- ..-.+.+|+.. ++.-..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~---~-----------~v~~v~~s~-~~~~l~~~~------~dg~i~iwd~~-~~~~~~ 170 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDES---T-----------YVASVKWSH-DGSFLSVGL------GNGLVDIYDVE-SQTKLR 170 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTT---C-----------CEEEEEECT-TSSEEEEEE------TTSCEEEEETT-TCCEEE
T ss_pred CeEEEeeCCCCcEeEeeecCCC---C-----------CEEEEEECC-CCCEEEEEC------CCCeEEEEECc-CCeEEE
Confidence 7899999999886654322111 0 134777776 334433221 23468899988 764322
Q ss_pred eccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCeEEEEEcCC
Q 035860 252 ISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGNLALVTFPT 330 (440)
Q Consensus 252 ~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~ 330 (440)
.-. . ....-..+..+|.+...+..+ ..|..+|+....-....+..... ....+... +|.+.++...+
T Consensus 171 ~~~--~---~~~~v~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 171 TMA--G---HQARVGCLSWNRHVLSSGSRS----GAIHHHDVRIANHQIGTLQGHSS---EVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp EEC--C---CSSCEEEEEEETTEEEEEETT----SEEEEEETTSSSCEEEEEECCSS---CEEEEEECTTSSEEEEEETT
T ss_pred Eec--C---CCCceEEEEECCCEEEEEcCC----CCEEEEecccCcceeeEEcCCCC---CeeEEEEcCCCCEEEEEeCC
Confidence 111 1 000011444566655555555 58999999844332222222111 11223333 46666665544
Q ss_pred CCCCCCCCccEEEEEEeec
Q 035860 331 DDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 331 ~~~~~~~~~~~l~IW~l~~ 349 (440)
..+.||-++.
T Consensus 239 ---------~~v~iwd~~~ 248 (401)
T 4aez_A 239 ---------NVVQIWDARS 248 (401)
T ss_dssp ---------SCEEEEETTC
T ss_pred ---------CeEEEccCCC
Confidence 6899998764
No 61
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=57.04 E-value=1.2e+02 Score=27.90 Aligned_cols=194 Identities=10% Similarity=0.034 Sum_probs=91.7
Q ss_pred ceeEEEEcccccccccCC-CCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCc
Q 035860 171 KDHVHLWNPLRREVLRLP-KLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W 249 (440)
...+.|||..++....-. .+......+ . ..+..+.+.+....+ ++... ..-.+.||+.. ++..
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h-------~--~~v~~~~~~p~~~~~-l~s~~-----~dg~i~iwd~~-~~~~ 166 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGH-------T--KRVGIVAWHPTAQNV-LLSAG-----CDNVILVWDVG-TGAA 166 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECC-------S--SCEEEEEECSSBTTE-EEEEE-----TTSCEEEEETT-TTEE
T ss_pred CCeEEEEEccCCCCccccCCceEEecCC-------C--CeEEEEEECcCCCCE-EEEEc-----CCCEEEEEECC-CCCc
Confidence 478999998887543211 000000001 0 113467777654333 33222 24468899988 7654
Q ss_pred ceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEee-CCCCCCCCCCCCEEEEe-CCeEEE
Q 035860 250 RIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKID-LPIDCNMEPRSPSLINL-RGNLAL 325 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~~~L~~~-~G~L~l 325 (440)
...-.... ....-..+.+ +|.+...+..+ ..|..+|+.+.+-...- ... ... ....+... +|.+.+
T Consensus 167 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 167 VLTLGPDV---HPDTIYSVDWSRDGALICTSCRD----KRVRVIEPRKGTVVAEKDRPH-EGT--RPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEECTTT---CCSCEEEEEECTTSSCEEEEETT----SEEEEEETTTTEEEEEEECSS-CSS--SCCEEEECSTTEEEE
T ss_pred cEEEecCC---CCCceEEEEECCCCCEEEEEecC----CcEEEEeCCCCceeeeeccCC-CCC--cceEEEEcCCCcEEE
Confidence 22110000 0000002222 45544444444 48999999887653322 222 110 12334433 467666
Q ss_pred EEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEEC
Q 035860 326 VTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDL 405 (440)
Q Consensus 326 v~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~ 405 (440)
+.... .....+.||-++... .=.....++... ....+ ....+|+.+++.......+.+||+
T Consensus 237 ~g~~~------~~d~~i~iwd~~~~~---~~~~~~~~~~~~---------~v~~~-~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 237 TGFSR------MSERQVALWDTKHLE---EPLSLQELDTSS---------GVLLP-FFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp EEECT------TCCEEEEEEETTBCS---SCSEEEECCCCS---------SCEEE-EEETTTTEEEEEETTCSCEEEEEE
T ss_pred EeccC------CCCceEEEEcCcccc---CCceEEeccCCC---------ceeEE-EEcCCCCEEEEEEcCCCeEEEEEe
Confidence 66321 123789999887531 111122222111 01111 223467766665444467889999
Q ss_pred CCCc
Q 035860 406 ENDD 409 (440)
Q Consensus 406 ~~~~ 409 (440)
.+++
T Consensus 298 ~~~~ 301 (402)
T 2aq5_A 298 TSEA 301 (402)
T ss_dssp CSST
T ss_pred cCCC
Confidence 8876
No 62
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=57.02 E-value=1.1e+02 Score=27.55 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred cCe-EEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCC--eEEEEEcC-CCCCCCCCCccEEEEE
Q 035860 271 YGD-MHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRG--NLALVTFP-TDDYDGDTEYIWIEIW 345 (440)
Q Consensus 271 ~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G--~L~lv~~~-~~~~~~~~~~~~l~IW 345 (440)
+|. +|...... ..|..||+.+.++..+ .++...........+....+ .|++.... . ..+.||
T Consensus 221 dg~~l~v~~~~~----~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~---------~~i~v~ 287 (361)
T 3scy_A 221 DGKFAYLINEIG----GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA---------DGVAIF 287 (361)
T ss_dssp TSSEEEEEETTT----CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS---------CEEEEE
T ss_pred CCCEEEEEcCCC----CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC---------CEEEEE
Q ss_pred EeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEE--EECCCCcEEE
Q 035860 346 VLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFV--LDLENDDCHL 412 (440)
Q Consensus 346 ~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~--yd~~~~~~~~ 412 (440)
.++. ....+..+..++..... .-.....+|+.|++.....+.+.+ +|.++++...
T Consensus 288 ~~~~--~~g~~~~~~~~~~g~~~----------~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 288 KVDE--TNGTLTKVGYQLTGIHP----------RNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EECT--TTCCEEEEEEEECSSCC----------CEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEcC--CCCcEEEeeEecCCCCC----------ceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
No 63
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=55.35 E-value=2e+02 Score=29.98 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=54.2
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEc---CeEEEEEecCCCCceEE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAY---GDMHWISFDQNNIHTCI 288 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~---G~lywl~~~~~~~~~~I 288 (440)
++.+|+..+. |++.. ......+++++.. ...=+.+.... ...+ .++.++ |.|||..... ..|
T Consensus 518 gIaVDp~~g~--LYwtD---~g~~~~I~~~~~d-G~~~~~lv~~~--l~~P---~GLavD~~~~~LYwaD~~~----~~I 582 (791)
T 3m0c_C 518 AIVVDPVHGF--MYWTD---WGTPAKIKKGGLN-GVDIYSLVTEN--IQWP---NGITLDLLSGRLYWVDSKL----HSI 582 (791)
T ss_dssp EEEEETTTTE--EEEEE---CSSSCEEEEEETT-SCCEEEEECSS--CSCE---EEEEEETTTTEEEEEETTT----TEE
T ss_pred eEEEecCCCC--EEEec---CCCCCeEEEEecC-CCceEEEEeCC--CCCc---eEEEEecCCCeEEEEeCCC----CcE
Confidence 7788876542 33221 1122466777766 33222221110 0111 255554 8999997555 589
Q ss_pred EEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcC
Q 035860 289 FSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFP 329 (440)
Q Consensus 289 l~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~ 329 (440)
.++|+....-..+ .-+..+. ....|...++.|+++...
T Consensus 583 ~~~d~dG~~~~~v~~~~~~l~---~P~glav~~~~lYwtD~~ 621 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDII 621 (791)
T ss_dssp EEEETTSCSCEEEEECTTTTS---SEEEEEEETTEEEEEETT
T ss_pred EEEecCCCceEEEecCCCccC---CCCEEEEeCCEEEEEECC
Confidence 9999987655444 2222111 234577778888888754
No 64
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=55.05 E-value=1e+02 Score=26.60 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=77.4
Q ss_pred eeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCC
Q 035860 155 FVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELS 234 (440)
Q Consensus 155 ~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~ 234 (440)
-..+|-+.+.... ...+.++++..+....+...... . ...++.+|+.. . ++... ..
T Consensus 128 ~~~~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~--~------------~p~~i~~~~~g-~--l~v~~----~~ 183 (286)
T 1q7f_A 128 VDNKGRIIVVECK---VMRVIIFDQNGNVLHKFGCSKHL--E------------FPNGVVVNDKQ-E--IFISD----NR 183 (286)
T ss_dssp ECTTSCEEEEETT---TTEEEEECTTSCEEEEEECTTTC--S------------SEEEEEECSSS-E--EEEEE----GG
T ss_pred EeCCCCEEEEECC---CCEEEEEcCCCCEEEEeCCCCcc--C------------CcEEEEECCCC-C--EEEEE----CC
Confidence 3446655555431 36788999865554444321110 0 02377788743 2 33332 12
Q ss_pred cceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCce-EEEEEEcCCccEEEeeCCCCCCCCC
Q 035860 235 DYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHT-CIFSFDFNKEEFKKIDLPIDCNMEP 311 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~-~Il~fD~~~e~~~~i~lP~~~~~~~ 311 (440)
.-.+.+|+.. ...-+.+..... ...+ .++.+ +|.+|...... . .|..||...+....+..+....
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~-~~~p---~~i~~d~~G~l~v~~~~~----~~~i~~~~~~g~~~~~~~~~~~~~--- 251 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGI-TNYP---IGVGINSNGEILIADNHN----NFNLTIFTQDGQLISALESKVKHA--- 251 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTT-SCSE---EEEEECTTCCEEEEECSS----SCEEEEECTTSCEEEEEEESSCCS---
T ss_pred CCEEEEEcCC-CCEEEEEccCCc-cCCC---cEEEECCCCCEEEEeCCC----CEEEEEECCCCCEEEEEcccCCCC---
Confidence 4567888866 443333321100 0111 14555 57766655444 3 7999998776666665433211
Q ss_pred CCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860 312 RSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 312 ~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
....+... +|.|++... + ..+.||.+..
T Consensus 252 ~~~~i~~~~~g~l~vs~~-~---------~~v~v~~~~~ 280 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLASK-D---------YRLYIYRYVQ 280 (286)
T ss_dssp CEEEEEEETTTEEEEEET-T---------TEEEEEECSC
T ss_pred cceeEEECCCCcEEEECC-C---------CeEEEEEccc
Confidence 11234443 578877742 3 6899998754
No 65
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=54.93 E-value=1.2e+02 Score=27.26 Aligned_cols=144 Identities=12% Similarity=0.027 Sum_probs=77.8
Q ss_pred cceEEEEEeCCCCCcceec----cCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCC
Q 035860 235 DYKIAVYTLGKDDSWRIIS----SSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNM 309 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~----~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~ 309 (440)
.-.+.+|+.. ++.....- ........+. ..++.++.+|...... ..|..+|..+.+. ..++...
T Consensus 16 ~~~l~~~d~~-t~~~~~~i~~~~n~~~lg~~~~--~i~~~~~~lyv~~~~~----~~v~viD~~t~~~~~~i~~~~---- 84 (328)
T 3dsm_A 16 NATLSYYDPA-TCEVENEVFYRANGFKLGDVAQ--SMVIRDGIGWIVVNNS----HVIFAIDINTFKEVGRITGFT---- 84 (328)
T ss_dssp CBEEEEEETT-TTEEECSHHHHHHSSCCBSCEE--EEEEETTEEEEEEGGG----TEEEEEETTTCCEEEEEECCS----
T ss_pred CceEEEEECC-CCEEhhhhHhhhcCcccCccce--EEEEECCEEEEEEcCC----CEEEEEECcccEEEEEcCCCC----
Confidence 5677888888 77654211 0000001111 1234567777777654 4899999998776 4453211
Q ss_pred CCCCCEEEE-eCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc
Q 035860 310 EPRSPSLIN-LRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR 388 (440)
Q Consensus 310 ~~~~~~L~~-~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (440)
....++. -+|+|++..... ..+.+|-++ ......+++........... ..++. +++
T Consensus 85 --~p~~i~~~~~g~lyv~~~~~---------~~v~~iD~~------t~~~~~~i~~g~~~~~~~~p---~~i~~---~~~ 141 (328)
T 3dsm_A 85 --SPRYIHFLSDEKAYVTQIWD---------YRIFIINPK------TYEITGYIECPDMDMESGST---EQMVQ---YGK 141 (328)
T ss_dssp --SEEEEEEEETTEEEEEEBSC---------SEEEEEETT------TTEEEEEEECTTCCTTTCBC---CCEEE---ETT
T ss_pred --CCcEEEEeCCCeEEEEECCC---------CeEEEEECC------CCeEEEEEEcCCccccCCCc---ceEEE---ECC
Confidence 2234555 578887776433 556555332 23444566654311110000 11221 566
Q ss_pred EEEEeec-CCCceEEEECCCCcEEE
Q 035860 389 WMVLDTF-RHDNKFVLDLENDDCHL 412 (440)
Q Consensus 389 ~i~l~~~-~~~~~~~yd~~~~~~~~ 412 (440)
.+++..+ ..+.+.++|+++++...
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEEEEcCCCCCEEEEEECCCCeEEE
Confidence 6888765 35789999999998543
No 66
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=53.32 E-value=1.5e+02 Score=27.79 Aligned_cols=183 Identities=8% Similarity=0.065 Sum_probs=91.4
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcce
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRI 251 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~ 251 (440)
..+.+||..++..+.|...... +..+.+.|.. .+ |+... .+.....+.+++.. ++..+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~----------------v~~~~~Spdg-~~-la~~s--~~~~~~~i~~~d~~-tg~~~~ 217 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQP----------------LMSPAWSPDG-SK-LAYVT--FESGRSALVIQTLA-NGAVRQ 217 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSC----------------EEEEEECTTS-SE-EEEEE--CTTSSCEEEEEETT-TCCEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCc----------------ceeeEEcCCC-CE-EEEEE--ecCCCcEEEEEECC-CCcEEE
Confidence 6899999876655544321110 2366676643 32 33332 11234688999999 887765
Q ss_pred eccCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCe-EEEE
Q 035860 252 ISSSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGN-LALV 326 (440)
Q Consensus 252 ~~~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~-L~lv 326 (440)
+...+.. . . .+.+ +|. |++....+.. ..|..+|+.+.+...+.-.. . ....+.-. +|+ |++.
T Consensus 218 l~~~~~~--~--~--~~~~spdg~~la~~~~~~g~--~~i~~~d~~~~~~~~l~~~~--~---~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 218 VASFPRH--N--G--APAFSPDGSKLAFALSKTGS--LNLYVMDLASGQIRQVTDGR--S---NNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp EECCSSC--E--E--EEEECTTSSEEEEEECTTSS--CEEEEEETTTCCEEECCCCS--S---CEEEEEECTTSSEEEEE
T ss_pred eecCCCc--c--c--CEEEcCCCCEEEEEEecCCC--ceEEEEECCCCCEEeCcCCC--C---cccceEECCCCCEEEEE
Confidence 5433220 0 0 1211 465 5555443311 47999999988765442111 0 11223322 465 4444
Q ss_pred EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC--CCceEEEE
Q 035860 327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR--HDNKFVLD 404 (440)
Q Consensus 327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~--~~~~~~yd 404 (440)
.... ....||.++-.+. . ...+... .... .......+|+.|++.... ...+.++|
T Consensus 285 s~~~---------g~~~i~~~d~~~~--~---~~~l~~~--------~~~~-~~~~~spdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 285 SDQA---------GRPQVYKVNINGG--A---PQRITWE--------GSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp ECTT---------SSCEEEEEETTSS--C---CEECCCS--------SSEE-EEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred ECCC---------CCcEEEEEECCCC--C---EEEEecC--------CCcc-cCeEECCCCCEEEEEECcCCceEEEEEE
Confidence 4322 3456777764321 1 1122111 0111 111223477777765433 23678899
Q ss_pred CCCCcEE
Q 035860 405 LENDDCH 411 (440)
Q Consensus 405 ~~~~~~~ 411 (440)
+.+++..
T Consensus 342 ~~~~~~~ 348 (415)
T 2hqs_A 342 LATGGVQ 348 (415)
T ss_dssp TTTCCEE
T ss_pred CCCCCEE
Confidence 9988754
No 67
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=51.30 E-value=1.4e+02 Score=27.05 Aligned_cols=196 Identities=17% Similarity=0.065 Sum_probs=87.6
Q ss_pred eeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860 156 VAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD 235 (440)
Q Consensus 156 s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 235 (440)
+.+|.|+.... ...+.|||..|++.......... .+.+ .+..+.|.+. +.+ ++... ..
T Consensus 91 s~d~~l~~~s~----dg~v~lWd~~~~~~~~~~~~~~~--~H~~---------~V~~v~~spd-g~~-l~sgs-----~d 148 (344)
T 4gqb_B 91 VGERGILVASD----SGAVELWELDENETLIVSKFCKY--EHDD---------IVSTVSVLSS-GTQ-AVSGS-----KD 148 (344)
T ss_dssp ETTTEEEEEET----TSEEEEEEECTTSSCEEEEEEEE--CCSS---------CEEEEEECTT-SSE-EEEEE-----TT
T ss_pred eCCCeEEEEEC----CCEEEEEeccCCCceeEeecccc--CCCC---------CEEEEEECCC-CCE-EEEEe-----CC
Confidence 34555554444 47899999998875433221111 0100 1346777764 333 22222 24
Q ss_pred ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCC
Q 035860 236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEP 311 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~ 311 (440)
-.+.+++.. ++.= +..+.. ....-..+.+ +|. +...+..+ ..|..+|+.+.+-. .+..+....
T Consensus 149 ~~i~iwd~~-~~~~--~~~~~~---h~~~V~~~~~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~--- 215 (344)
T 4gqb_B 149 ICIKVWDLA-QQVV--LSSYRA---HAAQVTCVAASPHKDSVFLSCSED----NRILLWDTRCPKPASQIGCSAPGY--- 215 (344)
T ss_dssp SCEEEEETT-TTEE--EEEECC---CSSCEEEEEECSSCTTEEEEEETT----SCEEEEETTSSSCEEECC----CC---
T ss_pred CeEEEEECC-CCcE--EEEEcC---cCCceEEEEecCCCCCceeeeccc----cccccccccccceeeeeecceeec---
Confidence 468888888 6532 111110 0000001222 232 22223333 36888999876543 333222110
Q ss_pred CCCEEEEe--CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860 312 RSPSLINL--RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW 389 (440)
Q Consensus 312 ~~~~L~~~--~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (440)
....+... ++.+.+....+ ..+.||-++. ...+.++.... .....++ ...+|..
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~------~~~~~~~~~h~--------~~v~~v~-fsp~g~~ 271 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKS------TSCVLSSAVHS--------QCVTGLV-FSPHSVP 271 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--------CCEEEECCS--------SCEEEEE-ECSSSSC
T ss_pred cceeeeecCCCCcceEEeccC---------CcEEEEECCC------CcEEEEEcCCC--------CCEEEEE-EccCCCe
Confidence 11123322 35666666544 7899997653 12233333211 1111111 1124543
Q ss_pred EEEeecCCCceEEEECCCCcE
Q 035860 390 MVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 390 i~l~~~~~~~~~~yd~~~~~~ 410 (440)
+++.-..+..+.++|..+++.
T Consensus 272 ~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp CEEEEETTSCEEEECTTCCEE
T ss_pred EEEEEeCCCeEEEEECCCCcE
Confidence 444333335677888887763
No 68
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=49.88 E-value=1e+02 Score=31.41 Aligned_cols=119 Identities=10% Similarity=-0.014 Sum_probs=60.4
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCC-------CCCCCCCEEEEeCCeEEEEEcCCCCCCCCCC
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDC-------NMEPRSPSLINLRGNLALVTFPTDDYDGDTE 338 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~-------~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~ 338 (440)
++..+|.+|..+... .|.++|..+++-.. .+++... ... ....++..+|+|++....
T Consensus 73 P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~v~v~~~d--------- 137 (677)
T 1kb0_A 73 PVVVDGIMYVSASWS-----VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDV-VNRGVALWKGKVYVGAWD--------- 137 (677)
T ss_dssp CEEETTEEEEECGGG-----CEEEEETTTTEEEEEECCCCCGGGGGGSSSCS-CCCCCEEETTEEEEECTT---------
T ss_pred CEEECCEEEEECCCC-----eEEEEECCCCcEEEEEcCCCCccccccccccC-CCCCceEECCEEEEEcCC---------
Confidence 788999999887655 79999987654332 2322210 000 112344566777665432
Q ss_pred ccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEEEECCCCcEEE
Q 035860 339 YIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFVLDLENDDCHL 412 (440)
Q Consensus 339 ~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~yd~~~~~~~~ 412 (440)
.. |..|+-...+..|+.. +.. ...... .....++ + .++.|++.... ...+..||.+|++..|
T Consensus 138 -g~--l~alD~~tG~~~W~~~--~~~-~~~~~~--~~~~~p~--v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 138 -GR--LIALDAATGKEVWHQN--TFE-GQKGSL--TITGAPR--V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp -SE--EEEEETTTCCEEEEEE--TTT-TCCSSC--BCCSCCE--E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred -CE--EEEEECCCCCEEeeec--CCc-CcCcCc--ccccCcE--E--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 23 4444432124457652 110 100000 0000122 1 35567775431 3568999999999544
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=48.74 E-value=99 Score=27.95 Aligned_cols=137 Identities=15% Similarity=0.049 Sum_probs=59.5
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCC-c
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDS-W 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~-W 249 (440)
...+.|||..++.+..+-..... .. .+..+.+.+.. .+ ++... ..-.+.+|+.. ++. |
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h--~~-----------~v~~~~~s~~~-~~-l~s~s-----~d~~v~vwd~~-~~~~~ 90 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDH--DK-----------IVTCVDWAPKS-NR-IVTCS-----QDRNAYVYEKR-PDGTW 90 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCC--SS-----------CEEEEEECTTT-CC-EEEEE-----TTSSEEEC-------CC
T ss_pred CCEEEEEEccCCceEEEEEEecC--Cc-----------eEEEEEEeCCC-CE-EEEEe-----CCCeEEEEEcC-CCCce
Confidence 46788999988754333222111 00 13477777653 33 22222 23468899988 776 6
Q ss_pred ceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCcc----EEEeeCCCCCCCCCCCCEEEEe-CCe
Q 035860 250 RIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEE----FKKIDLPIDCNMEPRSPSLINL-RGN 322 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~----~~~i~lP~~~~~~~~~~~L~~~-~G~ 322 (440)
......... ...-..+.+ +|.....+..+ ..|..+|+.+++ ...+.-|... ....+... +|.
T Consensus 91 ~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~ 159 (377)
T 3dwl_C 91 KQTLVLLRL---NRAATFVRWSPNEDKFAVGSGA----RVISVCYFEQENDWWVSKHLKRPLRS----TILSLDWHPNNV 159 (377)
T ss_dssp CCEEECCCC---SSCEEEEECCTTSSCCEEEESS----SCEEECCC-----CCCCEEECSSCCS----CEEEEEECTTSS
T ss_pred eeeeEeccc---CCceEEEEECCCCCEEEEEecC----CeEEEEEECCcccceeeeEeecccCC----CeEEEEEcCCCC
Confidence 544322110 000001111 34333333333 368888888765 2333322110 12223333 456
Q ss_pred EEEEEcCCCCCCCCCCccEEEEEEee
Q 035860 323 LALVTFPTDDYDGDTEYIWIEIWVLK 348 (440)
Q Consensus 323 L~lv~~~~~~~~~~~~~~~l~IW~l~ 348 (440)
+.+....+ ..+.||-++
T Consensus 160 ~l~~~~~d---------~~i~iwd~~ 176 (377)
T 3dwl_C 160 LLAAGCAD---------RKAYVLSAY 176 (377)
T ss_dssp EEEEEESS---------SCEEEEEEC
T ss_pred EEEEEeCC---------CEEEEEEEE
Confidence 65555443 679999985
No 70
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=48.18 E-value=1.4e+02 Score=26.15 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=53.0
Q ss_pred eEEEEEEcCC-ccEEE-----eeCCCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccc
Q 035860 286 TCIFSFDFNK-EEFKK-----IDLPIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWS 357 (440)
Q Consensus 286 ~~Il~fD~~~-e~~~~-----i~lP~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~ 357 (440)
..|..||+.+ .+... +..+... ....+... +|+ |++..... ..+.||.++.. ...+.
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~pdg~~l~~~~~~~---------~~i~~~~~~~~--~g~~~ 215 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGA----GPRHMVFHPNEQYAYCVNELN---------SSVDVWELKDP--HGNIE 215 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTC----CEEEEEECTTSSEEEEEETTT---------TEEEEEESSCT--TSCCE
T ss_pred CEEEEEEecCCCceeeecccccccCCCC----CcceEEECCCCCEEEEEeCCC---------CEEEEEEecCC--CCcEE
Confidence 3799999987 66643 3333321 11123333 465 55554333 78999999753 23455
Q ss_pred eeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECC
Q 035860 358 KAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLE 406 (440)
Q Consensus 358 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~ 406 (440)
....+...... .........+ ....+|+.+++.......+.+||+.
T Consensus 216 ~~~~~~~~~~~--~~~~~~~~~i-~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 216 CVQTLDMMPEN--FSDTRWAADI-HITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEEEECSCTT--CCSCCCEEEE-EECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEeeccccCcc--ccccCCccce-EECCCCCEEEEEecCCCEEEEEEEc
Confidence 44444422110 0001111112 2334677777655455678899988
No 71
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=45.89 E-value=1.4e+02 Score=25.35 Aligned_cols=192 Identities=9% Similarity=0.028 Sum_probs=94.6
Q ss_pred EEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecccc
Q 035860 153 IYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIE 232 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~ 232 (440)
+.-..+|-|.+... ...++++||.++....++..... ...++.+|+.. . ++....
T Consensus 72 i~~~~~g~l~v~~~----~~~i~~~d~~~~~~~~~~~~~~~---------------~p~~i~~~~~g-~--l~v~~~--- 126 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF----NNRVVTLAAGSNNQTVLPFDGLN---------------YPEGLAVDTQG-A--VYVADR--- 126 (270)
T ss_dssp EEECTTCCEEEEET----TTEEEEECTTCSCCEECCCCSCS---------------SEEEEEECTTC-C--EEEEEG---
T ss_pred eEECCCCCEEEEcC----CCEEEEEeCCCceEeeeecCCcC---------------CCcceEECCCC-C--EEEEEC---
Confidence 33344566555543 36889999988776655432211 02377788743 2 333321
Q ss_pred CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCC
Q 035860 233 LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNME 310 (440)
Q Consensus 233 ~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~ 310 (440)
..-.+.+|+.+ +........ .....+ .++.+ +|.+|+..... ..|..||..+.......... ..
T Consensus 127 -~~~~i~~~~~~-~~~~~~~~~--~~~~~p---~~i~~~~~g~l~v~~~~~----~~i~~~~~~~~~~~~~~~~~-~~-- 192 (270)
T 1rwi_B 127 -GNNRVVKLAAG-SKTQTVLPF--TGLNDP---DGVAVDNSGNVYVTDTDN----NRVVKLEAESNNQVVLPFTD-IT-- 192 (270)
T ss_dssp -GGTEEEEECTT-CCSCEECCC--CSCCSC---CCEEECTTCCEEEEEGGG----TEEEEECTTTCCEEECCCSS-CC--
T ss_pred -CCCEEEEEECC-CceeEeecc--ccCCCc---eeEEEeCCCCEEEEECCC----CEEEEEecCCCceEeecccC-CC--
Confidence 12356666544 443322211 100111 14544 48877766544 48999999887654432211 11
Q ss_pred CCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860 311 PRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW 389 (440)
Q Consensus 311 ~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (440)
....|... +|.|++..... ..+.+|-.+. .... .+....+ .....+ .+..+|.
T Consensus 193 -~p~~i~~d~~g~l~v~~~~~---------~~v~~~~~~~---~~~~----~~~~~~~-------~~p~~i-~~~~~g~- 246 (270)
T 1rwi_B 193 -APWGIAVDEAGTVYVTEHNT---------NQVVKLLAGS---TTST----VLPFTGL-------NTPLAV-AVDSDRT- 246 (270)
T ss_dssp -SEEEEEECTTCCEEEEETTT---------SCEEEECTTC---SCCE----ECCCCSC-------SCEEEE-EECTTCC-
T ss_pred -CceEEEECCCCCEEEEECCC---------CcEEEEcCCC---Ccce----eeccCCC-------CCceeE-EECCCCC-
Confidence 22234444 36777776533 4555554422 1111 1111110 011112 1223565
Q ss_pred EEEeecCCCceEEEECCCCc
Q 035860 390 MVLDTFRHDNKFVLDLENDD 409 (440)
Q Consensus 390 i~l~~~~~~~~~~yd~~~~~ 409 (440)
|++.....+.+.+|++..++
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 77766666788888887655
No 72
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=45.83 E-value=2.5e+02 Score=28.31 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=75.1
Q ss_pred ceeEEEEcccccccc--cCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCC
Q 035860 171 KDHVHLWNPLRREVL--RLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDS 248 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~--~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~ 248 (440)
...+++++.-|++-. .+-..+.. .. + ..+..+.+. +.|-++..... .....+.+++.. ++.
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~--~~---~--------~~~~~~SpD-G~~l~~~~~~~--~~~~~l~~~~~~-~~~ 263 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGD--PT---T--------FLQSDLSRD-GKYLFVYILRG--WSENDVYWKRPG-EKD 263 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCC--TT---C--------EEEEEECTT-SCCEEEEEEET--TTEEEEEEECTT-CSS
T ss_pred CCEEEEEECCCCchhceEEEecCCC--CE---E--------EEEEEECCC-CCEEEEEEeCC--CCceEEEEEcCC-CCc
Confidence 345899998887632 22111100 00 1 235666654 45544443211 123344555555 677
Q ss_pred cceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCcc---EEEeeCCCCCCCCCCCCEEEEeCCeEEE
Q 035860 249 WRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEE---FKKIDLPIDCNMEPRSPSLINLRGNLAL 325 (440)
Q Consensus 249 W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~---~~~i~lP~~~~~~~~~~~L~~~~G~L~l 325 (440)
|+.+...... ....+.-+|.+|+.+..+.. ...|+.+|+.+.. |..+-.+.... ....+...+|.|.+
T Consensus 264 ~~~l~~~~~~-----~~~~~~~~g~l~~~s~~~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~---~l~~~~~~~~~lv~ 334 (695)
T 2bkl_A 264 FRLLVKGVGA-----KYEVHAWKDRFYVLTDEGAP-RQRVFEVDPAKPARASWKEIVPEDSSA---SLLSVSIVGGHLSL 334 (695)
T ss_dssp CEEEEECSSC-----CEEEEEETTEEEEEECTTCT-TCEEEEEBTTBCSGGGCEEEECCCSSC---EEEEEEEETTEEEE
T ss_pred eEEeecCCCc-----eEEEEecCCcEEEEECCCCC-CCEEEEEeCCCCCccCCeEEecCCCCC---eEEEEEEECCEEEE
Confidence 8776532210 01134457776666543211 2689999997754 77664332110 11223444788877
Q ss_pred EEcCCCCCCCCCCccEEEEEEeec
Q 035860 326 VTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 326 v~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
....+ ....||+++-
T Consensus 335 ~~~~d---------g~~~l~~~~~ 349 (695)
T 2bkl_A 335 EYLKD---------ATSEVRVATL 349 (695)
T ss_dssp EEEET---------TEEEEEEEET
T ss_pred EEEEC---------CEEEEEEEeC
Confidence 77654 6788998874
No 73
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=45.39 E-value=31 Score=26.23 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=28.8
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
..+++.+|.|+.|. |..... + ...+ .+..|...+.|+|+...
T Consensus 11 A~V~~~d~~~~~W~--p~~~~~---g---------~s~V-~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 11 AAVMVYDDANKKWV--PAGGST---G---------FSRV-HIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEEETTTTEEE--EGGGCC---S---------CEEE-EEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCceE--ECCCCC---C---------ceEE-EEEEECCCCEEEEEEEE
Confidence 57899999999764 432111 0 0113 88899988999999875
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=45.28 E-value=1.7e+02 Score=26.11 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=65.8
Q ss_pred ceeEEEEccccccc---ccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCC
Q 035860 171 KDHVHLWNPLRREV---LRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDD 247 (440)
Q Consensus 171 ~~~~~V~NP~T~~~---~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~ 247 (440)
...+.|||..++++ ..+..... .+..+.+.+. +.+-+.. . ..-.+.+|+.. ++
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~----------------~v~~~~~~~~-~~~l~~~-~-----~dg~i~vwd~~-~~ 84 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNG----------------QVTGVDWAPD-SNRIVTC-G-----TDRNAYVWTLK-GR 84 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSS----------------CEEEEEEETT-TTEEEEE-E-----TTSCEEEEEEE-TT
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCC----------------cccEEEEeCC-CCEEEEE-c-----CCCeEEEEECC-CC
Confidence 47889999988853 22321111 1347777773 3433222 2 23468899998 88
Q ss_pred CcceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCcc-EEEe-eCCCCCCCCCCCCEEEEe-CCe
Q 035860 248 SWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEE-FKKI-DLPIDCNMEPRSPSLINL-RGN 322 (440)
Q Consensus 248 ~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~-~~~i-~lP~~~~~~~~~~~L~~~-~G~ 322 (440)
.+......... ...-..+.+ +|.....+..+ ..|..+|+.+.. +... .+...... ....+... +|.
T Consensus 85 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 155 (372)
T 1k8k_C 85 TWKPTLVILRI---NRAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSV 155 (372)
T ss_dssp EEEEEEECCCC---SSCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSS
T ss_pred eeeeeEEeecC---CCceeEEEECCCCCEEEEEeCC----CEEEEEEecCCCcceeeeeeecccCC--CeeEEEEcCCCC
Confidence 76544322110 000001222 35444444433 357777776654 2221 21111110 22223333 456
Q ss_pred EEEEEcCCCCCCCCCCccEEEEEEee
Q 035860 323 LALVTFPTDDYDGDTEYIWIEIWVLK 348 (440)
Q Consensus 323 L~lv~~~~~~~~~~~~~~~l~IW~l~ 348 (440)
+.++...+ ..+.||-+.
T Consensus 156 ~l~~~~~d---------g~i~~~d~~ 172 (372)
T 1k8k_C 156 LLAAGSCD---------FKCRIFSAY 172 (372)
T ss_dssp EEEEEETT---------SCEEEEECC
T ss_pred EEEEEcCC---------CCEEEEEcc
Confidence 65555443 679999864
No 75
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=44.93 E-value=1.9e+02 Score=26.70 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=36.9
Q ss_pred EEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc-EEEEeecCCCceEEEECCCCcEE
Q 035860 342 IEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR-WMVLDTFRHDNKFVLDLENDDCH 411 (440)
Q Consensus 342 l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~l~~~~~~~~~~yd~~~~~~~ 411 (440)
=+||+.+- .+...+.+|+...... .+ .+..+|+ .+|......+.+.+||.++++..
T Consensus 298 ~~V~VID~----~t~~vv~~i~~g~~p~---------~i-~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 298 KEVTSVTG----LVGQTSSQISLGHDVD---------AI-SVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CeEEEEEC----CCCEEEEEEECCCCcC---------eE-EECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 36888874 4577888887654210 11 2334777 56666555689999999998843
No 76
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=44.80 E-value=2.4e+02 Score=27.87 Aligned_cols=118 Identities=8% Similarity=0.054 Sum_probs=60.1
Q ss_pred cEEEcCeEEEEEe-cCCCCceEEEEEEc-CCc--cEEEeeCCCCCCC------CCCCCEEEEeCCeEEEEEcCCCCCCCC
Q 035860 267 GVSAYGDMHWISF-DQNNIHTCIFSFDF-NKE--EFKKIDLPIDCNM------EPRSPSLINLRGNLALVTFPTDDYDGD 336 (440)
Q Consensus 267 ~v~~~G~lywl~~-~~~~~~~~Il~fD~-~~e--~~~~i~lP~~~~~------~~~~~~L~~~~G~L~lv~~~~~~~~~~ 336 (440)
++..+|.+|..+. .. .|.++|. .++ .|+. +++..... ......++..+|+|++....
T Consensus 58 P~v~~g~vyv~~~~~~-----~v~AlD~~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------- 124 (571)
T 2ad6_A 58 PLVIGDMMYVHSAFPN-----NTYALNLNDPGKIVWQH-KPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN------- 124 (571)
T ss_dssp CEEETTEEEEECSTTT-----CEEEEETTCTTSEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-------
T ss_pred cEEECCEEEEEeCCCC-----EEEEEeCCCCccEEEEE-cCCCCccccccccccccccccEEECCEEEEEeCC-------
Confidence 7888999998876 44 7999998 654 4542 33321000 00112244567777665432
Q ss_pred CCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEEEECCCCcEE
Q 035860 337 TEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFVLDLENDDCH 411 (440)
Q Consensus 337 ~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~yd~~~~~~~ 411 (440)
. .|..++-...+..|+.. +..... . ......++ + .++.|++.... ...+..||.++++..
T Consensus 125 ---g--~l~alD~~tG~~~W~~~--~~~~~~-~---~~~~~~P~--v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 125 ---G--HLLALDAKTGKINWEVE--VCDPKV-G---STLTQAPF--V--AKDTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp ---S--EEEEEETTTCCEEEEEE--CCCGGG-T---CBCCSCCE--E--ETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred ---C--EEEEEECCCCCEEEEec--CCCCCc-c---ceeccCCE--E--ECCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 2 24445532124467643 111000 0 00000122 1 34557775432 357899999999854
Q ss_pred E
Q 035860 412 L 412 (440)
Q Consensus 412 ~ 412 (440)
|
T Consensus 190 W 190 (571)
T 2ad6_A 190 W 190 (571)
T ss_dssp E
T ss_pred E
Confidence 4
No 77
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=44.49 E-value=1.7e+02 Score=26.01 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=81.4
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEE--EcCe-EEEEEecCCCCceEE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVS--AYGD-MHWISFDQNNIHTCI 288 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~--~~G~-lywl~~~~~~~~~~I 288 (440)
++.++|... ++... ...-.+.+|+...++....+.......... ...+. -+|. +|...... ..|
T Consensus 145 ~~~~spdg~---l~v~~----~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~--p~~~~~spdg~~l~v~~~~~----~~v 211 (347)
T 3hfq_A 145 YTDLTPDNR---LAVID----LGSDKVYVYNVSDAGQLSEQSVLTMEAGFG--PRHLVFSPDGQYAFLAGELS----SQI 211 (347)
T ss_dssp EEEECTTSC---EEEEE----TTTTEEEEEEECTTSCEEEEEEEECCTTCC--EEEEEECTTSSEEEEEETTT----TEE
T ss_pred EEEECCCCc---EEEEe----CCCCEEEEEEECCCCcEEEeeeEEcCCCCC--CceEEECCCCCEEEEEeCCC----CEE
Confidence 677777544 33332 123468888887334444332111100000 00222 2576 55444333 355
Q ss_pred EEEEcC--CccEEEe----eCCCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeE
Q 035860 289 FSFDFN--KEEFKKI----DLPIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAY 360 (440)
Q Consensus 289 l~fD~~--~e~~~~i----~lP~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~ 360 (440)
..||+. +.++..+ ..|...........+... +|+ |++..... ..+.||.++.. ..+..+.
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~---------~~v~v~~~~~~---g~~~~~~ 279 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY---------NTLAVFAVTAD---GHLTLIQ 279 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT---------TEEEEEEECGG---GCEEEEE
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC---------CEEEEEEECCC---CcEEEeE
Confidence 556554 5666443 233321111011223333 465 55555433 78999999853 2566666
Q ss_pred EeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEE--ECCCCcEE
Q 035860 361 KISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVL--DLENDDCH 411 (440)
Q Consensus 361 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~y--d~~~~~~~ 411 (440)
.++..... ...+ ....+|+.|++.....+.+.+| |.++++..
T Consensus 280 ~~~~~~~~--------~~~~-~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 280 QISTEGDF--------PRDF-DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECSSSC--------CCEE-EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEecCCCC--------cCeE-EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 66642110 0112 2334788788866555677777 77777754
No 78
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=40.99 E-value=2e+02 Score=29.20 Aligned_cols=26 Identities=8% Similarity=-0.138 Sum_probs=21.5
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCcc
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEE 297 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~ 297 (440)
++..+|.+|..+... .|.++|..+++
T Consensus 62 P~v~~g~vyv~~~~~-----~v~AlD~~tG~ 87 (668)
T 1kv9_A 62 PLFHDGVIYTSMSWS-----RVIAVDAASGK 87 (668)
T ss_dssp CEEETTEEEEEEGGG-----EEEEEETTTCC
T ss_pred CEEECCEEEEECCCC-----eEEEEECCCCh
Confidence 788999999987765 89999987654
No 79
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=40.72 E-value=2.3e+02 Score=26.39 Aligned_cols=101 Identities=8% Similarity=0.080 Sum_probs=55.4
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcce
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRI 251 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~ 251 (440)
..+++||..|++.+.+...... ...+.+.|. +.+-++... ......+.+++.. ++..+.
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~----------------~~~~~~spd-g~~la~~~~---~~g~~~i~~~d~~-~~~~~~ 261 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRH----------------NGAPAFSPD-GSKLAFALS---KTGSLNLYVMDLA-SGQIRQ 261 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSC----------------EEEEEECTT-SSEEEEEEC---TTSSCEEEEEETT-TCCEEE
T ss_pred cEEEEEECCCCcEEEeecCCCc----------------ccCEEEcCC-CCEEEEEEe---cCCCceEEEEECC-CCCEEe
Confidence 5899999999987665432211 236667764 333222222 1234578888988 877655
Q ss_pred eccCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccEEEe
Q 035860 252 ISSSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEFKKI 301 (440)
Q Consensus 252 ~~~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i 301 (440)
+...... . . .+.+ +|. +++....+. ...|..+|+.+.+...+
T Consensus 262 l~~~~~~--~--~--~~~~spdg~~l~~~s~~~g--~~~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 262 VTDGRSN--N--T--EPTWFPDSQNLAFTSDQAG--RPQVYKVNINGGAPQRI 306 (415)
T ss_dssp CCCCSSC--E--E--EEEECTTSSEEEEEECTTS--SCEEEEEETTSSCCEEC
T ss_pred CcCCCCc--c--c--ceEECCCCCEEEEEECCCC--CcEEEEEECCCCCEEEE
Confidence 4432210 0 0 1221 465 554443221 14788999988775444
No 80
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=40.70 E-value=3.1e+02 Score=27.88 Aligned_cols=119 Identities=10% Similarity=0.037 Sum_probs=59.7
Q ss_pred cEEEcCeEEEEEecCCCCceEEEEEEcCCc--cEEEeeCCCCCCC------CCCCCEEEEeCCeEEEEEcCCCCCCCCCC
Q 035860 267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKE--EFKKIDLPIDCNM------EPRSPSLINLRGNLALVTFPTDDYDGDTE 338 (440)
Q Consensus 267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e--~~~~i~lP~~~~~------~~~~~~L~~~~G~L~lv~~~~~~~~~~~~ 338 (440)
++..+|.+|..+... .|.++|..++ .|+. .++..... ......++..+|+|++....
T Consensus 66 P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~d--------- 130 (689)
T 1yiq_A 66 PIVVDGVMYTTGPFS-----VVYALDARDGRLIWKY-DPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD--------- 130 (689)
T ss_dssp CEEETTEEEEECGGG-----CEEEEETTTCCEEEEE-CCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT---------
T ss_pred CEEECCEEEEEcCCC-----eEEEEECCCCceeEEE-cCCCCccccccccccCCCCccEEECCEEEEEccC---------
Confidence 788999999877655 7999998764 4543 22211000 00112244566777665432
Q ss_pred ccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEEEECCCCcEEE
Q 035860 339 YIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFVLDLENDDCHL 412 (440)
Q Consensus 339 ~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~yd~~~~~~~~ 412 (440)
.. |..++....+..|+.....+.... .. ....++ + .++.|++.... ...+..||.+|++..|
T Consensus 131 -g~--l~AlDa~TG~~~W~~~~~~~~~~~-~~----~~~sP~--v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 131 -GR--LEAIDAKTGQRAWSVDTRADHKRS-YT----ITGAPR--V--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp -SE--EEEEETTTCCEEEEEECCSCTTSC-CB----CCSCCE--E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred -CE--EEEEECCCCCEeeeecCcCCCCCC-cc----ccCCcE--E--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 23 344443212456765321111100 00 000121 1 34456664321 2468999999999544
No 81
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=40.25 E-value=1.9e+02 Score=25.44 Aligned_cols=110 Identities=8% Similarity=0.022 Sum_probs=0.0
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
+|.+||..... ..|..||..++.-..+..+. ....|... +|+|++..... ....|+.++.
T Consensus 42 ~g~lyv~d~~~----~~I~~~d~~g~~~~~~~~~~------~p~gia~~~dG~l~vad~~~---------~~~~v~~~d~ 102 (306)
T 2p4o_A 42 DGTIFVTNHEV----GEIVSITPDGNQQIHATVEG------KVSGLAFTSNGDLVATGWNA---------DSIPVVSLVK 102 (306)
T ss_dssp TSCEEEEETTT----TEEEEECTTCCEEEEEECSS------EEEEEEECTTSCEEEEEECT---------TSCEEEEEEC
T ss_pred CCCEEEEeCCC----CeEEEECCCCceEEEEeCCC------CceeEEEcCCCcEEEEeccC---------CcceEEEEcC
Q ss_pred cCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE
Q 035860 350 HYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL 412 (440)
Q Consensus 350 ~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~ 412 (440)
. ....+.+..++.... +-......+..+++.......++.+|..+++..+
T Consensus 103 ~--~g~~~~~~~~~~~~~-----------~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v 152 (306)
T 2p4o_A 103 S--DGTVETLLTLPDAIF-----------LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI 152 (306)
T ss_dssp T--TSCEEEEEECTTCSC-----------EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred C--CCeEEEEEeCCCccc-----------cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeE
No 82
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=40.20 E-value=2.4e+02 Score=29.40 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=40.2
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSF 291 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~f 291 (440)
|+.+|+..+ +|++.. .....+++++..+++....+.. ......+.. -.+.++.|||..... ..|.++
T Consensus 562 GLavD~~~~--~LYwaD----~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~g--lav~~~~lYwtD~~~----~~I~~~ 628 (791)
T 3m0c_C 562 GITLDLLSG--RLYWVD----SKLHSISSIDVNGGNRKTILED-EKRLAHPFS--LAVFEDKVFWTDIIN----EAIFSA 628 (791)
T ss_dssp EEEEETTTT--EEEEEE----TTTTEEEEEETTSCSCEEEEEC-TTTTSSEEE--EEEETTEEEEEETTT----TEEEEE
T ss_pred EEEEecCCC--eEEEEe----CCCCcEEEEecCCCceEEEecC-CCccCCCCE--EEEeCCEEEEEECCC----CEEEEE
Confidence 788887555 344442 2345677888762333322221 111111111 234678999998766 589999
Q ss_pred EcCCcc
Q 035860 292 DFNKEE 297 (440)
Q Consensus 292 D~~~e~ 297 (440)
|..+++
T Consensus 629 dk~tG~ 634 (791)
T 3m0c_C 629 NRLTGS 634 (791)
T ss_dssp ETTTCC
T ss_pred eCCCCc
Confidence 966553
No 83
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=39.38 E-value=1.8e+02 Score=24.85 Aligned_cols=192 Identities=10% Similarity=-0.016 Sum_probs=90.4
Q ss_pred EEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecccc
Q 035860 153 IYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIE 232 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~ 232 (440)
+.-..+|-|.+.... ...++++|| +++...+..+... . . ..++.+|+... +.....
T Consensus 104 i~~~~~g~l~v~~~~---~~~i~~~d~-~g~~~~~~~~~~~---~---~--------~~~i~~~~~g~---l~v~~~--- 159 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMN---GNRIGRITD-DGKIREYELPNKG---S---Y--------PSFITLGSDNA---LWFTEN--- 159 (299)
T ss_dssp EEECTTSCEEEEETT---TTEEEEECT-TCCEEEEECSSTT---C---C--------EEEEEECTTSC---EEEEET---
T ss_pred eEECCCCCEEEEecC---CceEEEECC-CCCEEEecCCCCC---C---C--------CceEEEcCCCC---EEEEeC---
Confidence 333446766665431 367899999 7766554322111 0 0 23677776432 222210
Q ss_pred CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCC
Q 035860 233 LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNME 310 (440)
Q Consensus 233 ~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~ 310 (440)
..-.+.+|+. ++....... +.....+ .++.+ +|.+|+..... ..|..||. +.++..+.+|....
T Consensus 160 -~~~~i~~~~~--~g~~~~~~~-~~~~~~~---~~i~~~~~g~l~v~~~~~----~~i~~~~~-~g~~~~~~~~~~~~-- 225 (299)
T 2z2n_A 160 -QNNAIGRITE--SGDITEFKI-PTPASGP---VGITKGNDDALWFVEIIG----NKIGRITT-SGEITEFKIPTPNA-- 225 (299)
T ss_dssp -TTTEEEEECT--TCCEEEEEC-SSTTCCE---EEEEECTTSSEEEEETTT----TEEEEECT-TCCEEEEECSSTTC--
T ss_pred -CCCEEEEEcC--CCcEEEeeC-CCCCCcc---eeEEECCCCCEEEEccCC----ceEEEECC-CCcEEEEECCCCCC--
Confidence 1223444443 333333211 1100111 14444 47876655433 47999999 77787777664221
Q ss_pred CCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860 311 PRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW 389 (440)
Q Consensus 311 ~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (440)
....+... +|.|.+..... ..+.+|-. .+ . ...+....-. . .+.+....+| .
T Consensus 226 -~~~~i~~~~~g~l~v~~~~~---------~~i~~~d~--~g---~---~~~~~~~~~~------~--~~~~i~~~~g-~ 278 (299)
T 2z2n_A 226 -RPHAITAGAGIDLWFTEWGA---------NKIGRLTS--NN---I---IEEYPIQIKS------A--EPHGICFDGE-T 278 (299)
T ss_dssp -CEEEEEECSTTCEEEEETTT---------TEEEEEET--TT---E---EEEEECSSSS------C--CEEEEEECSS-C
T ss_pred -CceeEEECCCCCEEEeccCC---------ceEEEECC--CC---c---eEEEeCCCCC------C--ccceEEecCC-C
Confidence 22234443 47877776433 45555543 11 1 2222221100 0 1222222344 4
Q ss_pred EEEeecCCCceEEEECCCCcE
Q 035860 390 MVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 390 i~l~~~~~~~~~~yd~~~~~~ 410 (440)
|++... .+.+..||+++++.
T Consensus 279 l~v~~~-~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 279 IWFAME-CDKIGKLTLIKDNM 298 (299)
T ss_dssp EEEEET-TTEEEEEEEC----
T ss_pred EEEEec-CCcEEEEEcCcccC
Confidence 777544 36899999988753
No 84
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=38.85 E-value=2.2e+02 Score=29.09 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=33.4
Q ss_pred cEEEc---CeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEc
Q 035860 267 GVSAY---GDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTF 328 (440)
Q Consensus 267 ~v~~~---G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~ 328 (440)
++.++ |.|||..... ..|.+||+....-..+ ..+.... ....|...++.|+++..
T Consensus 544 Glavd~~~~~LY~aD~~~----~~I~~~d~dG~~~~~~~~~~~~~~---~P~glavd~~~lywtd~ 602 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDI 602 (699)
T ss_dssp CEEECTTTCCEEEEETTT----TEEEEECSSSSCCEEECCCSSSCS---SCCCCEEETTEEEEECS
T ss_pred EEEEeccCCEEEEEecCC----CeEEEEccCCCceEEEEecCCcCC---CceEeEEECCEEEEEeC
Confidence 66664 8899987665 5899999976544443 2222111 22234556677777764
No 85
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=38.31 E-value=3.4e+02 Score=27.63 Aligned_cols=166 Identities=14% Similarity=0.037 Sum_probs=86.7
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCC--C-cceeccCCcccCCCCCcccEE-EcCeEEEEEecCCCCceE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDD--S-WRIISSSLALRPDVSYEFGVS-AYGDMHWISFDQNNIHTC 287 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~--~-W~~~~~~p~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~ 287 (440)
+..+.+ .+.|-++... ........+.+++.. ++ . |+.+...... . ...+. -++.+|+.+..+.. ...
T Consensus 272 ~~~~Sp-DG~~l~~~~~-~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~--~---~~~~~~dg~~l~~~s~~~~~-~~~ 342 (741)
T 1yr2_A 272 GASVSS-DGRWVVITSS-EGTDPVNTVHVARVT-NGKIGPVTALIPDLKA--Q---WDFVDGVGDQLWFVSGDGAP-LKK 342 (741)
T ss_dssp EEEECT-TSCEEEEEEE-CTTCSCCEEEEEEEE-TTEECCCEEEECSSSS--C---EEEEEEETTEEEEEECTTCT-TCE
T ss_pred EEEECC-CCCEEEEEEE-ccCCCcceEEEEECC-CCCCcccEEecCCCCc--e---EEEEeccCCEEEEEECCCCC-CCE
Confidence 555554 3445444433 111235677888888 76 6 8777532210 0 01233 34567777665422 268
Q ss_pred EEEEEcCC--ccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecC
Q 035860 288 IFSFDFNK--EEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTD 365 (440)
Q Consensus 288 Il~fD~~~--e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~ 365 (440)
|+.+|+.+ +.|..+- |.... ....+...++.|.+....+ ....||+++-.|. ....+...
T Consensus 343 l~~~d~~~~~~~~~~l~-~~~~~---~l~~~~~~~~~lv~~~~~d---------g~~~l~~~~~~g~-----~~~~l~~~ 404 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVV-PESKD---NLESVGIAGNRLFASYIHD---------AKSQVLAFDLDGK-----PAGAVSLP 404 (741)
T ss_dssp EEEEECSSSSCEEEEEE-CCCSS---EEEEEEEEBTEEEEEEEET---------TEEEEEEEETTSC-----EEEECBCS
T ss_pred EEEEeCCCCccccEEEe-cCCCC---eEEEEEEECCEEEEEEEEC---------CEEEEEEEeCCCC-----ceeeccCC
Confidence 99999988 5787664 33211 1112344477887777654 6788998874321 23344322
Q ss_pred CCCCccccccceeeEEEEEEcCcEEEEe--ecC-CCceEEEECCCCcEEE
Q 035860 366 QDGDRIEEEDFFQYVCSIVVAGRWMVLD--TFR-HDNKFVLDLENDDCHL 412 (440)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~--~~~-~~~~~~yd~~~~~~~~ 412 (440)
.. .....+ ....+|+.|++. +.. ...++.||+.+++..+
T Consensus 405 ~~-------~~v~~~-~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 405 GI-------GSASGL-SGRPGDRHAYLSFSSFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp SS-------CEEEEE-ECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred CC-------eEEEEe-ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 11 111111 122355555542 222 1356889999887543
No 86
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=37.91 E-value=1.9e+02 Score=24.70 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=97.7
Q ss_pred eeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCC
Q 035860 155 FVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELS 234 (440)
Q Consensus 155 ~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~ 234 (440)
+..+|.|.+.+.. ...+.++++.++....+-..... ... ++.+|+..+. ++... ..
T Consensus 44 d~~~~~ly~~d~~---~~~I~~~~~~g~~~~~~~~~~~~--------------~p~-~ia~d~~~~~--lyv~d----~~ 99 (267)
T 1npe_A 44 DCVDKVVYWTDIS---EPSIGRASLHGGEPTTIIRQDLG--------------SPE-GIALDHLGRT--IFWTD----SQ 99 (267)
T ss_dssp ETTTTEEEEEETT---TTEEEEEESSSCCCEEEECTTCC--------------CEE-EEEEETTTTE--EEEEE----TT
T ss_pred ecCCCEEEEEECC---CCEEEEEecCCCCcEEEEECCCC--------------Ccc-EEEEEecCCe--EEEEE----CC
Confidence 3346666666541 46788888877654332111111 013 7788875442 33322 12
Q ss_pred cceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE---cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCC
Q 035860 235 DYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA---YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEP 311 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~ 311 (440)
.-.+.+++.. ...-+.+.... ...+ .++.+ +|.+||....... ..|..+++.......+.- ....
T Consensus 100 ~~~I~~~~~~-g~~~~~~~~~~--~~~P---~~i~vd~~~g~lyv~~~~~~~--~~I~~~~~dg~~~~~~~~-~~~~--- 167 (267)
T 1npe_A 100 LDRIEVAKMD-GTQRRVLFDTG--LVNP---RGIVTDPVRGNLYWTDWNRDN--PKIETSHMDGTNRRILAQ-DNLG--- 167 (267)
T ss_dssp TTEEEEEETT-SCSCEEEECSS--CSSE---EEEEEETTTTEEEEEECCSSS--CEEEEEETTSCCCEEEEC-TTCS---
T ss_pred CCEEEEEEcC-CCCEEEEEECC--CCCc---cEEEEeeCCCEEEEEECCCCC--cEEEEEecCCCCcEEEEE-CCCC---
Confidence 3467777776 43322221111 0111 14444 5889998754211 478899987655444321 1111
Q ss_pred CCCEEEEe--CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860 312 RSPSLINL--RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW 389 (440)
Q Consensus 312 ~~~~L~~~--~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (440)
....|... ++.|++..... .. |++++-.+. .....++. . . .+. ++..+++.
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~---------~~--I~~~~~~g~----~~~~~~~~--~----~-----~P~-gi~~d~~~ 220 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGT---------HR--AECLNPAQP----GRRKVLEG--L----Q-----YPF-AVTSYGKN 220 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTT---------TE--EEEEETTEE----EEEEEEEC--C----C-----SEE-EEEEETTE
T ss_pred CCcEEEEcCCCCEEEEEECCC---------CE--EEEEecCCC----ceEEEecC--C----C-----Cce-EEEEeCCE
Confidence 11234433 45788877543 44 444443221 11111221 1 0 122 12235677
Q ss_pred EEEeecCCCceEEEECCCCcEE
Q 035860 390 MVLDTFRHDNKFVLDLENDDCH 411 (440)
Q Consensus 390 i~l~~~~~~~~~~yd~~~~~~~ 411 (440)
+|+.....+.+..+|..+++..
T Consensus 221 lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 221 LYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEECCCCeEEEEeCCCCCce
Confidence 8888777778999999988743
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=37.36 E-value=2.3e+02 Score=25.46 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=15.1
Q ss_pred cCcEEEEeecCCCceEEEECCCCc
Q 035860 386 AGRWMVLDTFRHDNKFVLDLENDD 409 (440)
Q Consensus 386 ~g~~i~l~~~~~~~~~~yd~~~~~ 409 (440)
+|..++... ....+.+||+.+++
T Consensus 256 ~~~~l~~~~-~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 256 DGLHLLTVG-TDNRMRLWNSSNGE 278 (408)
T ss_dssp TSSEEEEEE-TTSCEEEEETTTCC
T ss_pred CCCEEEEec-CCCeEEEEECCCCc
Confidence 566555443 33578899998876
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=36.88 E-value=2.1e+02 Score=26.70 Aligned_cols=210 Identities=8% Similarity=-0.005 Sum_probs=0.0
Q ss_pred cEEEeeecCCCcceeEEEEcccc---cccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860 159 GFICFGESSCHVKDHVHLWNPLR---REVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD 235 (440)
Q Consensus 159 GLlcl~~~~~~~~~~~~V~NP~T---~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 235 (440)
|+|+.... ...+.||+..+ .....-+......... .+..+.+.+..+.+-+..-. .
T Consensus 195 ~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-----------~v~~v~~~p~~~~~l~s~~~------d 253 (430)
T 2xyi_A 195 GYLLSASD----DHTICLWDINATPKEHRVIDAKNIFTGHTA-----------VVEDVAWHLLHESLFGSVAD------D 253 (430)
T ss_dssp TEEEEECT----TSCEEEEETTSCCBGGGEEECSEEECCCSS-----------CEEEEEECSSCTTEEEEEET------T
T ss_pred CeEEEEeC----CCeEEEEeCCCCCCCCceeccceeecCCCC-----------CEeeeEEeCCCCCEEEEEeC------C
Q ss_pred ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEc--Ce-EEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCC
Q 035860 236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAY--GD-MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPR 312 (440)
Q Consensus 236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~--G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~ 312 (440)
-.+.+|+.. ++.-............... .+.++ |. ++..+..+ ..|..||+.+..-....+....... .
T Consensus 254 g~i~i~d~~-~~~~~~~~~~~~~~~~~v~--~i~~~p~~~~~l~tg~~d----g~v~vwd~~~~~~~~~~~~~h~~~v-~ 325 (430)
T 2xyi_A 254 QKLMIWDTR-NNNTSKPSHTVDAHTAEVN--CLSFNPYSEFILATGSAD----KTVALWDLRNLKLKLHSFESHKDEI-F 325 (430)
T ss_dssp SEEEEEETT-CSCSSSCSEEEECCSSCEE--EEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEECCSSCE-E
T ss_pred CeEEEEECC-CCCCCcceeEeecCCCCeE--EEEeCCCCCCEEEEEeCC----CeEEEEeCCCCCCCeEEeecCCCCE-E
Q ss_pred CCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEE
Q 035860 313 SPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVL 392 (440)
Q Consensus 313 ~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l 392 (440)
.+...-.+..+.+....+ ..+.||-+...+....=......+...+............++-. .+|..+++
T Consensus 326 ~i~~sp~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~ 395 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTD---------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-PNEPWIIC 395 (430)
T ss_dssp EEEECSSCTTEEEEEETT---------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-SSSTTEEE
T ss_pred EEEECCCCCCEEEEEeCC---------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-CCCCCEEE
Q ss_pred eecCCCceEEEECCC
Q 035860 393 DTFRHDNKFVLDLEN 407 (440)
Q Consensus 393 ~~~~~~~~~~yd~~~ 407 (440)
.....+.+.+|++.+
T Consensus 396 s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 396 SVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEETTSEEEEEEECH
T ss_pred EEECCCCEEEeEccc
No 89
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=35.24 E-value=63 Score=24.61 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=29.2
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
..+++.+|.|+.|. |..... .+ ...+ .+..|...+.|.|+...
T Consensus 11 A~V~~~d~~~~~W~--p~~~g~--~g---------vs~V-~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 11 ATVMLYDDGNKRWL--PAGTGP--QA---------FSRV-QIYHNPTANSFRVVGRK 53 (115)
T ss_dssp EECBEECTTTSSCC--BSSCSC--CC---------CEEE-EEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCcee--ECCCCC--CC---------ccEE-EEEEeCCCCEEEEEEEE
Confidence 56889999999974 432210 01 0113 88899989999999875
No 90
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=35.11 E-value=2.4e+02 Score=25.08 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=58.5
Q ss_pred EeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccC
Q 035860 154 YFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIEL 233 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~ 233 (440)
++..+|.|.+.+.. ....+.+.++-....+.+-..... + .. |+.+|+..+ ++.... .
T Consensus 127 vdp~~g~ly~~d~~--~~~~I~~~~~dG~~~~~~~~~~~~-------~-------P~-gla~d~~~~--~lY~~D----~ 183 (316)
T 1ijq_A 127 VDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLVTENIQ-------W-------PN-GITLDLLSG--RLYWVD----S 183 (316)
T ss_dssp EETTTTEEEEEECS--SSCEEEEEETTSCCEEEEECSSCS-------C-------EE-EEEEETTTT--EEEEEE----T
T ss_pred eCCCCCEEEEEccC--CCCeEEEEcCCCCCeEEEEECCCC-------C-------ce-EEEEeccCC--EEEEEE----C
Confidence 44467777766541 125677777754333222111111 1 12 888887544 343332 2
Q ss_pred CcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCcc
Q 035860 234 SDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEE 297 (440)
Q Consensus 234 ~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~ 297 (440)
..-.+++++.. ...=+.+.........+.. -...+|.+||..... ..|..+|..+.+
T Consensus 184 ~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~g--iav~~~~ly~~d~~~----~~V~~~~~~~g~ 240 (316)
T 1ijq_A 184 KLHSISSIDVN-GGNRKTILEDEKRLAHPFS--LAVFEDKVFWTDIIN----EAIFSANRLTGS 240 (316)
T ss_dssp TTTEEEEEETT-SCSCEEEEECTTTTSSEEE--EEEETTEEEEEETTT----TEEEEEETTTCC
T ss_pred CCCeEEEEecC-CCceEEEeecCCccCCcEE--EEEECCEEEEEECCC----CeEEEEeCCCCc
Confidence 24567888876 4332333221111111211 223578999988665 589999986544
No 91
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=33.48 E-value=2.4e+02 Score=24.58 Aligned_cols=189 Identities=8% Similarity=-0.006 Sum_probs=89.7
Q ss_pred eEEEEcccccccccC-CCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcce
Q 035860 173 HVHLWNPLRREVLRL-PKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRI 251 (440)
Q Consensus 173 ~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~ 251 (440)
.+.||++.+++.... +.. .. ..++.++|..+ + ++.... .....+.+|+....+.-..
T Consensus 109 ~i~v~d~~~~~~~~~~~~~-~~----------------~~~~~~spdg~-~-l~~~~~---~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIP-YD----------------AVGIAISPNGN-G-LILIDR---SSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EEEEEETTTTEEEEEEECC-TT----------------EEEEEECTTSS-C-EEEEEE---TTTTEEEEEEECTTCCEEE
T ss_pred cEEEEECCCCCeEEEEECC-CC----------------ccceEECCCCC-E-EEEEec---CCCceEEEEEECCCCcEee
Confidence 899999998876542 221 10 12677777543 3 222211 1122377888772222211
Q ss_pred ec--cCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccE----EEeeCCCCCCCCCCCCEEEEe-CC
Q 035860 252 IS--SSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEF----KKIDLPIDCNMEPRSPSLINL-RG 321 (440)
Q Consensus 252 ~~--~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~----~~i~lP~~~~~~~~~~~L~~~-~G 321 (440)
.. ..+. .....++.+ +|. +|...... ..|..+|+.+.+. ..++... ....+... +|
T Consensus 167 ~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~----~~v~v~d~~~~~~~~~~~~~~~~~------~~~~~~~spdg 232 (331)
T 3u4y_A 167 TGQEFISG----GTRPFNITFTPDGNFAFVANLIG----NSIGILETQNPENITLLNAVGTNN------LPGTIVVSRDG 232 (331)
T ss_dssp EEEEEECS----SSSEEEEEECTTSSEEEEEETTT----TEEEEEECSSTTSCEEEEEEECSS------CCCCEEECTTS
T ss_pred cCCccccC----CCCccceEECCCCCEEEEEeCCC----CeEEEEECCCCcccceeeeccCCC------CCceEEECCCC
Confidence 11 0010 000012222 576 44444333 4799999987764 3334321 11223333 56
Q ss_pred eEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceE
Q 035860 322 NLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKF 401 (440)
Q Consensus 322 ~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~ 401 (440)
+..++.... ...+.+|-++. .....+..++......... ......+ ....+|..+++.....+.+.
T Consensus 233 ~~l~v~~~~--------~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~spdg~~l~v~~~~~~~v~ 298 (331)
T 3u4y_A 233 STVYVLTES--------TVDVFNFNQLS----GTLSFVKSFGHGLLIDPRP-LFGANQM-ALNKTETKLFISANISRELK 298 (331)
T ss_dssp SEEEEECSS--------EEEEEEEETTT----TEEEEEEEEECCCCCCCGG-GTTCCCE-EECTTSSEEEEEETTTTEEE
T ss_pred CEEEEEEcC--------CCEEEEEECCC----CceeeecccccccccCCCC-cccccce-EECCCCCEEEEecCCCCcEE
Confidence 644444322 25566665543 2333344444321110000 0000011 23347887888766666889
Q ss_pred EEECCCCcEE
Q 035860 402 VLDLENDDCH 411 (440)
Q Consensus 402 ~yd~~~~~~~ 411 (440)
+||+.++...
T Consensus 299 v~d~~~~~~~ 308 (331)
T 3u4y_A 299 VFTISGKVVG 308 (331)
T ss_dssp EEETTSCEEE
T ss_pred EEEecCCccc
Confidence 9999988754
No 92
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=33.28 E-value=1.4e+02 Score=30.68 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=40.3
Q ss_pred EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEE
Q 035860 212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSF 291 (440)
Q Consensus 212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~f 291 (440)
|+.+|+..+. |++.. ...-.+++|+.. +..-+.+.........+.. ..+..+.+||..... ..|..+
T Consensus 544 Glavd~~~~~--LY~aD----~~~~~I~~~d~d-G~~~~~~~~~~~~~~~P~g--lavd~~~lywtd~~~----~~V~~~ 610 (699)
T 1n7d_A 544 GITLDLLSGR--LYWVD----SKLHSISSIDVN-GGNRKTILEDEKRLAHPFS--LAVFEDKVFWTDIIN----EAIFSA 610 (699)
T ss_dssp CEEECTTTCC--EEEEE----TTTTEEEEECSS-SSCCEEECCCSSSCSSCCC--CEEETTEEEEECSTT----TCEEEE
T ss_pred EEEEeccCCE--EEEEe----cCCCeEEEEccC-CCceEEEEecCCcCCCceE--eEEECCEEEEEeCCC----CeEEEE
Confidence 6677765443 22221 234567777776 4333333222111112211 334567899998655 579999
Q ss_pred EcCCccEE
Q 035860 292 DFNKEEFK 299 (440)
Q Consensus 292 D~~~e~~~ 299 (440)
|..+.+..
T Consensus 611 d~~~G~~~ 618 (699)
T 1n7d_A 611 NRLTGSDV 618 (699)
T ss_dssp ETTTEEEE
T ss_pred EccCCCce
Confidence 98766543
No 93
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=33.14 E-value=58 Score=25.07 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=28.5
Q ss_pred eeEEEEccccc-ccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRR-EVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
..+++.+|.|+ .|...-... ..+ .+.+|+..+.|+|+.+.
T Consensus 11 A~V~~~D~~tk~~W~p~g~~~----------------~~V-~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSKHA----------------VTV-SYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEECTTTSCSEEESCSSC----------------EEE-EEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCCCc----------------eEE-EEEEcCCCCEEEEEEcc
Confidence 67899999996 885432211 113 78889988999998864
No 94
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=30.87 E-value=3.3e+02 Score=25.31 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred cEEEc---CeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcC
Q 035860 267 GVSAY---GDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFP 329 (440)
Q Consensus 267 ~v~~~---G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~ 329 (440)
++.++ |.|||..... ..|.++|+....-..+ ..+.... ....|...+|.|++....
T Consensus 250 glavd~~~~~lY~aD~~~----~~I~~~d~dG~~~~~~~~~~~~l~---~P~gl~v~~~~lywtd~~ 309 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDII 309 (400)
T ss_dssp EEEEETTTTEEEEEETTT----TEEEEEETTSCCCEEEEECSSTTS---SEEEEEEETTEEEEEESS
T ss_pred EEEEEeCCCEEEEEECCC----CEEEEEeCCCCccEEEEeCCCCCC---CCEEEEEeCCEEEEecCC
Confidence 55544 8899987655 5899999987555444 3322221 233567778888888853
No 95
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=30.25 E-value=2.8e+02 Score=24.31 Aligned_cols=189 Identities=13% Similarity=0.053 Sum_probs=90.1
Q ss_pred ceeEEEEccccccccc-CCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCc
Q 035860 171 KDHVHLWNPLRREVLR-LPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W 249 (440)
...+.++|+.|++... ++..... . ++.+++.. .+ ++... ...-.+.+|+.. ++.-
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~----------------~-~~~~s~dg-~~-l~v~~----~~~~~v~~~d~~-~~~~ 123 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKP----------------F-GATINNTT-QT-LWFGN----TVNSAVTAIDAK-TGEV 123 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCC----------------C-SEEEETTT-TE-EEEEE----TTTTEEEEEETT-TCCE
T ss_pred CccEEEEcCCCCeEEEEEecCCCc----------------c-eEEECCCC-CE-EEEEe----cCCCEEEEEeCC-CCee
Confidence 4689999999987544 3321110 1 45566543 33 22222 123477888888 7653
Q ss_pred c-eeccCC-cc--cCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCCCCCCEEEEeCC
Q 035860 250 R-IISSSL-AL--RPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNMEPRSPSLINLRG 321 (440)
Q Consensus 250 ~-~~~~~p-~~--~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~~~~~~L~~~~G 321 (440)
. .+.... .. ...+....++.+ +|. +|....... ..|..+|+.+.+... ++.+.... .... ..-+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~---~~~~-~s~dg 196 (353)
T 3vgz_A 124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE---SVIWVVDGGNIKLKTAIQNTGKMS---TGLA-LDSEG 196 (353)
T ss_dssp EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS---CEEEEEETTTTEEEEEECCCCTTC---CCCE-EETTT
T ss_pred EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC---ceEEEEcCCCCceEEEecCCCCcc---ceEE-ECCCC
Confidence 2 121100 00 000000013333 555 444443221 379999998876543 33222111 2222 22345
Q ss_pred eEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceE
Q 035860 322 NLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKF 401 (440)
Q Consensus 322 ~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~ 401 (440)
+..++.... ..+.+|-++. ......++..... .......+ ....+|+.+++.....+.+.
T Consensus 197 ~~l~~~~~~---------~~i~~~d~~~------~~~~~~~~~~~~~----~~~~~~~~-~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 197 KRLYTTNAD---------GELITIDTAD------NKILSRKKLLDDG----KEHFFINI-SLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp TEEEEECTT---------SEEEEEETTT------TEEEEEEECCCSS----SCCCEEEE-EEETTTTEEEEEESSSSEEE
T ss_pred CEEEEEcCC---------CeEEEEECCC------CeEEEEEEcCCCC----CCcccceE-EECCCCCEEEEEeCCCCEEE
Confidence 544444322 5666665442 3344444442110 01111111 23347887888766557889
Q ss_pred EEECCCCcE
Q 035860 402 VLDLENDDC 410 (440)
Q Consensus 402 ~yd~~~~~~ 410 (440)
+||+++++.
T Consensus 257 ~~d~~~~~~ 265 (353)
T 3vgz_A 257 VVDTRNGNI 265 (353)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCcE
Confidence 999999884
No 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=28.57 E-value=2.9e+02 Score=23.97 Aligned_cols=23 Identities=9% Similarity=0.123 Sum_probs=13.6
Q ss_pred cCcEEEEeecCCCceEEEECCCCc
Q 035860 386 AGRWMVLDTFRHDNKFVLDLENDD 409 (440)
Q Consensus 386 ~g~~i~l~~~~~~~~~~yd~~~~~ 409 (440)
+|..|+-. ..+..+.+||+++++
T Consensus 317 dg~~l~sg-s~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 DGQTLFAG-YTDNLVRVWQVTIGT 339 (340)
T ss_dssp TSSEEEEE-ETTSCEEEEEEEC--
T ss_pred CCCEEEEE-eCCCEEEEEeCCCcC
Confidence 56644433 344578899998875
No 97
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=28.28 E-value=1.3e+02 Score=29.54 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=58.1
Q ss_pred ccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcce
Q 035860 158 YGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYK 237 (440)
Q Consensus 158 ~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 237 (440)
+++++.... .....|||..|++.+.|...+. ..+.++|. +.+-+.... +......
T Consensus 122 ~~~~~~s~~----~~~~~l~d~~~g~~~~l~~~~~------------------~~~~~spD-G~~la~~~~--~~~~~~~ 176 (582)
T 3o4h_A 122 EAVVFTGAT----EDRVALYALDGGGLRELARLPG------------------FGFVSDIR-GDLIAGLGF--FGGGRVS 176 (582)
T ss_dssp SCEEEEEEC----SSCEEEEEEETTEEEEEEEESS------------------CEEEEEEE-TTEEEEEEE--EETTEEE
T ss_pred CeEEEEecC----CCCceEEEccCCcEEEeecCCC------------------ceEEECCC-CCEEEEEEE--cCCCCeE
Confidence 346665554 2455699999998776642111 03334442 333222221 1122245
Q ss_pred EEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEE
Q 035860 238 IAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK 299 (440)
Q Consensus 238 ~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~ 299 (440)
+.+++.. ++.++.+....... ......=||...+....+ + ...|..+|+++.+..
T Consensus 177 i~~~d~~-~g~~~~l~~~~~~~----~~~~~SpDG~~l~~~~~~-~-~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 177 LFTSNLS-SGGLRVFDSGEGSF----SSASISPGMKVTAGLETA-R-EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEETT-TCCCEEECCSSCEE----EEEEECTTSCEEEEEECS-S-CEEEEEECTTTCCEE
T ss_pred EEEEcCC-CCCceEeecCCCcc----ccceECCCCCEEEEccCC-C-eeEEEEEcCCCCcEE
Confidence 7888888 88888765332210 000111256644433333 1 147999999988876
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=28.24 E-value=3e+02 Score=24.07 Aligned_cols=97 Identities=4% Similarity=0.088 Sum_probs=46.9
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
...+.|||..+++...+..... .+..+.+.+..+.-.++... ..-.+.+|+.. ++.-.
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~l~~~~-----~dg~i~vwd~~-~~~~~ 164 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDA----------------PVKTIHWIKAPNYSCVMTGS-----WDKTLKFWDTR-SSNPM 164 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSS----------------CEEEEEEEECSSCEEEEEEE-----TTSEEEEECSS-CSSCS
T ss_pred CCcEEEEEcCCCCceeeccccC----------------ceEEEEEEeCCCCCEEEEcc-----CCCcEEEEECC-CCcEE
Confidence 4678899988887665322111 12355563222222233322 24468888888 65422
Q ss_pred eeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEE
Q 035860 251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK 299 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~ 299 (440)
..-..+. .. ..+...+....++..+ ..+..||+.+..-.
T Consensus 165 ~~~~~~~----~~--~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~ 203 (368)
T 3mmy_A 165 MVLQLPE----RC--YCADVIYPMAVVATAE----RGLIVYQLENQPSE 203 (368)
T ss_dssp EEEECSS----CE--EEEEEETTEEEEEEGG----GCEEEEECSSSCEE
T ss_pred EEEecCC----Cc--eEEEecCCeeEEEeCC----CcEEEEEeccccch
Confidence 1111111 00 1222223333344443 37888888776443
No 99
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=28.21 E-value=3e+02 Score=24.00 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=34.2
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEe
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVL 347 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l 347 (440)
+|.+|.....+ ..|..+|+.+.+.. .++++... ....+... +|+ |++.... ...+.+|-+
T Consensus 10 ~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~~~v~~~~---------~~~i~~~d~ 72 (349)
T 1jmx_B 10 GHEYMIVTNYP----NNLHVVDVASDTVYKSCVMPDKF----GPGTAMMAPDNRTAYVLNNH---------YGDIYGIDL 72 (349)
T ss_dssp TCEEEEEEETT----TEEEEEETTTTEEEEEEECSSCC----SSCEEEECTTSSEEEEEETT---------TTEEEEEET
T ss_pred CCEEEEEeCCC----CeEEEEECCCCcEEEEEecCCCC----CCceeEECCCCCEEEEEeCC---------CCcEEEEeC
Confidence 45555555554 48999999987764 45666411 11233333 465 4444432 256777765
Q ss_pred e
Q 035860 348 K 348 (440)
Q Consensus 348 ~ 348 (440)
+
T Consensus 73 ~ 73 (349)
T 1jmx_B 73 D 73 (349)
T ss_dssp T
T ss_pred C
Confidence 4
No 100
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=28.08 E-value=2.9e+02 Score=23.86 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=63.8
Q ss_pred ceeEEEEccccccccc-CCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCc
Q 035860 171 KDHVHLWNPLRREVLR-LPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W 249 (440)
...+.|||..+++... ++.-.. .+..+.+.+. +.+ ++... ..-.+.+|+.. ++.-
T Consensus 128 d~~i~iwd~~~~~~~~~~~~~~~----------------~v~~~~~~~~-~~~-l~~~~-----~d~~i~~wd~~-~~~~ 183 (312)
T 4ery_A 128 DESVRIWDVKTGKCLKTLPAHSD----------------PVSAVHFNRD-GSL-IVSSS-----YDGLCRIWDTA-SGQC 183 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSS----------------CEEEEEECTT-SSE-EEEEE-----TTSCEEEEETT-TCCE
T ss_pred CCcEEEEECCCCEEEEEecCCCC----------------cEEEEEEcCC-CCE-EEEEe-----CCCcEEEEECC-CCce
Confidence 4678899988776432 322111 1336667663 332 22221 23468889988 7643
Q ss_pred ceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEE-eCCeEEE
Q 035860 250 RIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLIN-LRGNLAL 325 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~-~~G~L~l 325 (440)
...-.... .... ..+.+ +|.....+..+ ..|..+|+.+.+.... ...... .. ....... .+|.+.+
T Consensus 184 ~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 184 LKTLIDDD--NPPV--SFVKFSPNGKYILAATLD----NTLKLWDYSKGKCLKTYTGHKNE-KY-CIFANFSVTGGKWIV 253 (312)
T ss_dssp EEEECCSS--CCCE--EEEEECTTSSEEEEEETT----TEEEEEETTTTEEEEEECSSCCS-SS-CCCEEEECSSSCEEE
T ss_pred eeEEeccC--CCce--EEEEECCCCCEEEEEcCC----CeEEEEECCCCcEEEEEEecCCc-eE-EEEEEEEeCCCcEEE
Confidence 21110000 0000 01111 34443334433 4799999988765332 222111 00 1111222 2455555
Q ss_pred EEcCCCCCCCCCCccEEEEEEeec
Q 035860 326 VTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 326 v~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
....+ ..+.||-++.
T Consensus 254 sg~~d---------g~i~vwd~~~ 268 (312)
T 4ery_A 254 SGSED---------NLVYIWNLQT 268 (312)
T ss_dssp ECCTT---------SCEEEEETTT
T ss_pred EECCC---------CEEEEEECCC
Confidence 54433 7899998864
No 101
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=27.85 E-value=4.9e+02 Score=26.31 Aligned_cols=179 Identities=6% Similarity=0.040 Sum_probs=85.5
Q ss_pred ceeEEEEccccccccc-CCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCc
Q 035860 171 KDHVHLWNPLRREVLR-LPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W 249 (440)
...+.|||..|++... +..... .+..+.+.+.. .+ ++... ..-.+.+|+.. ++ |
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~~----------------~v~~~~~s~~~-~~-l~~~~-----~dg~i~vw~~~-~~-~ 130 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHPD----------------YIRSIAVHPTK-PY-VLSGS-----DDLTVKLWNWE-NN-W 130 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS----------------CEEEEEECSSS-SE-EEEEE-----TTSEEEEEEGG-GT-S
T ss_pred CCeEEEEECCCCcEEEEEecCCC----------------CEEEEEEeCCC-CE-EEEEc-----CCCEEEEEECC-CC-c
Confidence 4789999998887543 221110 13366676643 33 33222 24568888887 65 2
Q ss_pred ceeccCCcccCCCCCcccEEE---cCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCCCCCCEEEEe---CCe
Q 035860 250 RIISSSLALRPDVSYEFGVSA---YGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNMEPRSPSLINL---RGN 322 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~~~~~~L~~~---~G~ 322 (440)
........ ....-..+.+ +|.....+..+ ..|..+|+.+..-.. +...... ....+... +|.
T Consensus 131 ~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d----g~v~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 131 ALEQTFEG---HEHFVMCVAFNPKDPSTFASGCLD----RTVKVWSLGQSTPNFTLTTGQER----GVNYVDYYPLPDKP 199 (814)
T ss_dssp EEEEEEEC---CSSCEEEEEEETTEEEEEEEEETT----SEEEEEETTCSSCSEEEECCCTT----CCCEEEECCSTTCC
T ss_pred eEEEEEcC---CCCcEEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcceeEEecCCCC----CEEEEEEEECCCCC
Confidence 22211110 0000012222 34444444444 489999987654432 2222111 22223332 566
Q ss_pred EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEE
Q 035860 323 LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFV 402 (440)
Q Consensus 323 L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~ 402 (440)
+.++...+ ..+.+|-++. ...+..+.... .....+ ....+|..|+... ....+.+
T Consensus 200 ~l~~~~~d---------g~i~~~d~~~------~~~~~~~~~~~--------~~v~~~-~~~~~~~~l~~~~-~dg~v~v 254 (814)
T 3mkq_A 200 YMITASDD---------LTIKIWDYQT------KSCVATLEGHM--------SNVSFA-VFHPTLPIIISGS-EDGTLKI 254 (814)
T ss_dssp EEEEECTT---------SEEEEEETTT------TEEEEEEECCS--------SCEEEE-EECSSSSEEEEEE-TTSCEEE
T ss_pred EEEEEeCC---------CEEEEEECCC------CcEEEEEcCCC--------CCEEEE-EEcCCCCEEEEEe-CCCeEEE
Confidence 66666544 7899997753 22333333211 011111 1223555444433 3356778
Q ss_pred EECCCCcE
Q 035860 403 LDLENDDC 410 (440)
Q Consensus 403 yd~~~~~~ 410 (440)
||+.+++.
T Consensus 255 wd~~~~~~ 262 (814)
T 3mkq_A 255 WNSSTYKV 262 (814)
T ss_dssp EETTTCSE
T ss_pred EECCCCcE
Confidence 88887663
No 102
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=27.75 E-value=3.4e+02 Score=24.47 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=45.9
Q ss_pred EEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe--CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeec
Q 035860 287 CIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL--RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIST 364 (440)
Q Consensus 287 ~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~--~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~ 364 (440)
.|..+|+.+..-....+..... .....+... +|.+.+....+ ..+.||-++. ...+.++..
T Consensus 241 ~i~~~d~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d---------g~v~~wd~~~------~~~~~~~~~ 303 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLNQGHQ--KGILSLDWCHQDEHLLLSSGRD---------NTVLLWNPES------AEQLSQFPA 303 (416)
T ss_dssp CCCEEETTSTTSCSBCCCSCCS--SCEEEEEECSSCSSCEEEEESS---------SEEEEECSSS------CCEEEEEEC
T ss_pred eEEEEeCCCCCCCcEEeecCcc--CceeEEEeCCCCCCeEEEEeCC---------CCEEEeeCCC------CccceeecC
Confidence 6888888875311111110000 022233333 46666666544 7899998764 234455543
Q ss_pred CCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCc
Q 035860 365 DQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDD 409 (440)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~ 409 (440)
.... ...+ ....+|..+++.......+.+||+.+.+
T Consensus 304 ~~~~--------v~~~-~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 RGNW--------CFKT-KFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSSC--------CCCE-EECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCc--------eEEE-EECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 2110 0111 1112442244433334567888888765
No 103
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=27.68 E-value=2.8e+02 Score=24.81 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=35.4
Q ss_pred cEEEc--CeEEEEEecCC-CCceEEEEEEcCCcc-EEEeeCCCCCCCCC-CCCEEEEe--CCeEEEEEc
Q 035860 267 GVSAY--GDMHWISFDQN-NIHTCIFSFDFNKEE-FKKIDLPIDCNMEP-RSPSLINL--RGNLALVTF 328 (440)
Q Consensus 267 ~v~~~--G~lywl~~~~~-~~~~~Il~fD~~~e~-~~~i~lP~~~~~~~-~~~~L~~~--~G~L~lv~~ 328 (440)
++.++ |.||++..... .....|+.||+.+++ ...+.+|....... ..-.++.. +|.+++...
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence 56664 88988864410 000379999999887 56678875332111 22345554 356666543
No 104
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=27.45 E-value=2.7e+02 Score=23.29 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=85.4
Q ss_pred eeEEEEcccc-cccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860 172 DHVHLWNPLR-REVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 172 ~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~ 250 (440)
..+++||..+ ++...+....... . +..+.+.|. +.+ ++... ........+.+++.. ++.-+
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~~~~--~------------~~~~~~spd-g~~-l~~~~-~~~~~~~~l~~~~~~-~~~~~ 123 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVDTGFATI--C------------NNDHGISPD-GAL-YAISD-KVEFGKSAIYLLPST-GGTPR 123 (297)
T ss_dssp TEEEEEESSSCCSCEECCCTTCCC--B------------CSCCEECTT-SSE-EEEEE-CTTTSSCEEEEEETT-CCCCE
T ss_pred CeEEEEeCCCCCCceEeccccccc--c------------ccceEECCC-CCE-EEEEE-eCCCCcceEEEEECC-CCceE
Confidence 6899999999 8776665322110 0 113445543 233 22222 111234566666666 65544
Q ss_pred eeccCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCeEEEE
Q 035860 251 IISSSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGNLALV 326 (440)
Q Consensus 251 ~~~~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~lv 326 (440)
.+...... . .+.+ +|. +++....+. ...|..+|+.+.....+..... ....+... +|+..++
T Consensus 124 ~~~~~~~~-----~--~~~~spdg~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 124 LMTKNLPS-----Y--WHGWSPDGKSFTYCGIRDQ--VFDIYSMDIDSGVETRLTHGEG-----RNDGPDYSPDGRWIYF 189 (297)
T ss_dssp ECCSSSSE-----E--EEEECTTSSEEEEEEEETT--EEEEEEEETTTCCEEECCCSSS-----CEEEEEECTTSSEEEE
T ss_pred EeecCCCc-----c--ceEECCCCCEEEEEECCCC--ceEEEEEECCCCcceEcccCCC-----ccccceECCCCCEEEE
Confidence 43322110 0 1111 344 444443331 1467777777766654422111 11223332 4654444
Q ss_pred EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC----------
Q 035860 327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR---------- 396 (440)
Q Consensus 327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---------- 396 (440)
.... ...+.||.++..+ .. ...+.... ... .......+|+.|++....
T Consensus 190 ~~~~--------~~~~~i~~~~~~~--~~---~~~~~~~~--------~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 190 NSSR--------TGQMQIWRVRVDG--SS---VERITDSA--------YGD-WFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp EECT--------TSSCEEEEEETTS--SC---EEECCCCS--------EEE-EEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred EecC--------CCCccEEEECCCC--CC---cEEEecCC--------ccc-CCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 3321 2578999997432 11 12221110 000 111222467766664432
Q ss_pred CCceEEEECCCCcE
Q 035860 397 HDNKFVLDLENDDC 410 (440)
Q Consensus 397 ~~~~~~yd~~~~~~ 410 (440)
...+.++|+.+++.
T Consensus 248 ~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 248 DVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEEEETTSCSC
T ss_pred ceEEEEEecCCCCc
Confidence 13578999998874
No 105
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=27.33 E-value=2.9e+02 Score=23.54 Aligned_cols=201 Identities=11% Similarity=0.129 Sum_probs=95.4
Q ss_pred EEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecccc
Q 035860 153 IYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIE 232 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~ 232 (440)
+.-+.+|-+.+.... ...+.++||..+....++...... .. . ....++.+++..+. ++....
T Consensus 35 v~~~~~g~l~v~~~~---~~~i~~~d~~g~~~~~~~~~~~~~-~~---~------~~p~~i~~~~~~g~--l~v~~~--- 96 (286)
T 1q7f_A 35 VAVNAQNDIIVADTN---NHRIQIFDKEGRFKFQFGECGKRD-SQ---L------LYPNRVAVVRNSGD--IIVTER--- 96 (286)
T ss_dssp EEECTTCCEEEEEGG---GTEEEEECTTSCEEEEECCBSSST-TC---B------SSEEEEEEETTTTE--EEEEEC---
T ss_pred EEECCCCCEEEEECC---CCEEEEECCCCcEEEEecccCCCc-cc---c------cCceEEEEEcCCCe--EEEEcC---
Confidence 333445666555431 467999998866555555322110 00 0 01236677543332 322220
Q ss_pred CCcceEEEEEeCCCCCc-ceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCC
Q 035860 233 LSDYKIAVYTLGKDDSW-RIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNM 309 (440)
Q Consensus 233 ~~~~~~~Vyss~~t~~W-~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~ 309 (440)
.....+.+|+ . ++.. +.+..... ..+ .++.+ +|.+|...... ..|..||...+....+..+....
T Consensus 97 ~~~~~i~~~d-~-~g~~~~~~~~~~~--~~~---~~i~~~~~g~l~v~~~~~----~~i~~~~~~g~~~~~~~~~~~~~- 164 (286)
T 1q7f_A 97 SPTHQIQIYN-Q-YGQFVRKFGATIL--QHP---RGVTVDNKGRIIVVECKV----MRVIIFDQNGNVLHKFGCSKHLE- 164 (286)
T ss_dssp GGGCEEEEEC-T-TSCEEEEECTTTC--SCE---EEEEECTTSCEEEEETTT----TEEEEECTTSCEEEEEECTTTCS-
T ss_pred CCCCEEEEEC-C-CCcEEEEecCccC--CCc---eEEEEeCCCCEEEEECCC----CEEEEEcCCCCEEEEeCCCCccC-
Confidence 1134677777 3 3332 22211110 011 14444 57776654443 47999998777666665443221
Q ss_pred CCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc
Q 035860 310 EPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR 388 (440)
Q Consensus 310 ~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (440)
....|... +|.|++..... ..+.+|-.+ + . .+..+..... + .....++ +..+|.
T Consensus 165 --~p~~i~~~~~g~l~v~~~~~---------~~i~~~~~~--g---~--~~~~~~~~g~---~---~~p~~i~-~d~~G~ 219 (286)
T 1q7f_A 165 --FPNGVVVNDKQEIFISDNRA---------HCVKVFNYE--G---Q--YLRQIGGEGI---T---NYPIGVG-INSNGE 219 (286)
T ss_dssp --SEEEEEECSSSEEEEEEGGG---------TEEEEEETT--C---C--EEEEESCTTT---S---CSEEEEE-ECTTCC
T ss_pred --CcEEEEECCCCCEEEEECCC---------CEEEEEcCC--C---C--EEEEEccCCc---c---CCCcEEE-ECCCCC
Confidence 12234444 47877766533 677777542 1 1 2223332110 0 0111222 222554
Q ss_pred EEEEeecCCC-ceEEEECCCCc
Q 035860 389 WMVLDTFRHD-NKFVLDLENDD 409 (440)
Q Consensus 389 ~i~l~~~~~~-~~~~yd~~~~~ 409 (440)
|++.....+ .+.+||...+.
T Consensus 220 -l~v~~~~~~~~i~~~~~~g~~ 240 (286)
T 1q7f_A 220 -ILIADNHNNFNLTIFTQDGQL 240 (286)
T ss_dssp -EEEEECSSSCEEEEECTTSCE
T ss_pred -EEEEeCCCCEEEEEECCCCCE
Confidence 666655544 78899976544
No 106
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=27.10 E-value=2.8e+02 Score=23.27 Aligned_cols=193 Identities=10% Similarity=0.044 Sum_probs=89.7
Q ss_pred EEeeeccEEEe-eecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccc
Q 035860 153 IYFVAYGFICF-GESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVI 231 (440)
Q Consensus 153 i~~s~~GLlcl-~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~ 231 (440)
+..+.+|-|.+ ... ....+.++|+-++....++...... ..++.+|+... +.....
T Consensus 29 i~~~~~g~l~v~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~---------------p~~i~~~~~g~---l~v~~~-- 85 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEG---MYGRVVKLATGSTGTTVLPFNGLYQ---------------PQGLAVDGAGT---VYVTDF-- 85 (270)
T ss_dssp EEECTTCCEEEEECS---SSCEEEEECC-----EECCCCSCCS---------------CCCEEECTTCC---EEEEET--
T ss_pred eEECCCCCEEEEccC---CCCcEEEecCCCcccceEeeCCcCC---------------cceeEECCCCC---EEEEcC--
Confidence 44445565555 432 1467899999887766655322111 12666776432 333221
Q ss_pred cCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCC
Q 035860 232 ELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNM 309 (440)
Q Consensus 232 ~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~ 309 (440)
.-.+.+|+.. ++.-........ ..+ .++.+ +|.+|+..... ..|..||..+........ ....
T Consensus 86 ---~~~i~~~d~~-~~~~~~~~~~~~--~~p---~~i~~~~~g~l~v~~~~~----~~i~~~~~~~~~~~~~~~-~~~~- 150 (270)
T 1rwi_B 86 ---NNRVVTLAAG-SNNQTVLPFDGL--NYP---EGLAVDTQGAVYVADRGN----NRVVKLAAGSKTQTVLPF-TGLN- 150 (270)
T ss_dssp ---TTEEEEECTT-CSCCEECCCCSC--SSE---EEEEECTTCCEEEEEGGG----TEEEEECTTCCSCEECCC-CSCC-
T ss_pred ---CCEEEEEeCC-CceEeeeecCCc--CCC---cceEECCCCCEEEEECCC----CEEEEEECCCceeEeecc-ccCC-
Confidence 3356777766 544332221100 011 14444 57877665544 478888877655433221 1111
Q ss_pred CCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc
Q 035860 310 EPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR 388 (440)
Q Consensus 310 ~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (440)
....|... +|+|++..... ..+.+|-.+.. . .. ......+ .....++ +..+|
T Consensus 151 --~p~~i~~~~~g~l~v~~~~~---------~~i~~~~~~~~--~-~~----~~~~~~~-------~~p~~i~-~d~~g- 203 (270)
T 1rwi_B 151 --DPDGVAVDNSGNVYVTDTDN---------NRVVKLEAESN--N-QV----VLPFTDI-------TAPWGIA-VDEAG- 203 (270)
T ss_dssp --SCCCEEECTTCCEEEEEGGG---------TEEEEECTTTC--C-EE----ECCCSSC-------CSEEEEE-ECTTC-
T ss_pred --CceeEEEeCCCCEEEEECCC---------CEEEEEecCCC--c-eE----eecccCC-------CCceEEE-ECCCC-
Confidence 12234444 57877766432 55666554321 1 11 1111111 0111121 21244
Q ss_pred EEEEeecCCCceEEEECCCCcE
Q 035860 389 WMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 389 ~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
.|++.....+.+..||+.++..
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CEEEEETTTSCEEEECTTCSCC
T ss_pred CEEEEECCCCcEEEEcCCCCcc
Confidence 5777766666889999987653
No 107
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=25.84 E-value=86 Score=25.70 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=28.2
Q ss_pred eeEEEEccccc-ccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe
Q 035860 172 DHVHLWNPLRR-EVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228 (440)
Q Consensus 172 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 228 (440)
..+++.+|.|+ .|...-.. . ..+ .+.+|...+.|+|+.+.
T Consensus 16 A~Vm~~D~~tk~~WvP~g~~--~--------------~~V-~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 16 AHVFQIDPNTKKNWVPTSKH--A--------------VTV-SYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEEECTTSSCCSEESCSS--C--------------EEE-EEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCCCceeecCCC--C--------------eEE-EEEEcCCCCEEEEEEcc
Confidence 57899999997 78543221 1 013 67789988999998864
No 108
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=25.49 E-value=3.3e+02 Score=23.61 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=14.9
Q ss_pred cCcEEEEeecCCCceEEEEC--CCCc
Q 035860 386 AGRWMVLDTFRHDNKFVLDL--ENDD 409 (440)
Q Consensus 386 ~g~~i~l~~~~~~~~~~yd~--~~~~ 409 (440)
+|+.+|+.....+.+..||. ++++
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCc
Confidence 56667775544456777765 5554
No 109
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=25.03 E-value=3.4e+02 Score=23.60 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=55.4
Q ss_pred eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecc-ccCCcceEEEEEeCCCCCcc
Q 035860 172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPV-IELSDYKIAVYTLGKDDSWR 250 (440)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~-~~~~~~~~~Vyss~~t~~W~ 250 (440)
..++.+||.|++...+. ... . -.++.+++..+ .++..... .......+.+|+.. ++...
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~-------~--------p~gl~~spdg~--~lyv~~~~~~~~~~~~i~~~~~~-~~~l~ 228 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLD-------H--------PNGLAFSPDEQ--TLYVSQTPEQGHGSVEITAFAWR-DGALH 228 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EES-------S--------EEEEEECTTSS--EEEEEECCC---CCCEEEEEEEE-TTEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCC-------C--------CcceEEcCCCC--EEEEEecCCcCCCCCEEEEEEec-CCCcc
Confidence 56888899888776653 111 0 12666766432 22222210 00112467888877 54421
Q ss_pred eeccCCc-ccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCC
Q 035860 251 IISSSLA-LRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPI 305 (440)
Q Consensus 251 ~~~~~p~-~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~ 305 (440)
....... ....+ .++.+ +|. .|++..+ .|..||.+.+....+.+|.
T Consensus 229 ~~~~~~~~~~~~p---dgi~~d~~G~-lwv~~~~-----gv~~~~~~g~~~~~~~~~~ 277 (305)
T 3dr2_A 229 DRRHFASVPDGLP---DGFCVDRGGW-LWSSSGT-----GVCVFDSDGQLLGHIPTPG 277 (305)
T ss_dssp EEEEEECCSSSCC---CSEEECTTSC-EEECCSS-----EEEEECTTSCEEEEEECSS
T ss_pred CCeEEEECCCCCC---CeEEECCCCC-EEEecCC-----cEEEECCCCCEEEEEECCC
Confidence 1111000 00111 14554 477 4555543 6999999988888888886
No 110
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=24.74 E-value=5.2e+02 Score=25.63 Aligned_cols=149 Identities=7% Similarity=0.005 Sum_probs=72.8
Q ss_pred ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCC-Cc
Q 035860 171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDD-SW 249 (440)
Q Consensus 171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~-~W 249 (440)
...++|||..|++...+...... .. + +..+.+.|. +.+-++... ........+.+++.. ++ ..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~--~~---~--------~~~~~~spd-g~~l~~~~~-~~~~~~~~v~~~d~~-~g~~~ 297 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPK--EK---F--------LTNLSWSPD-ENILYVAEV-NRAQNECKVNAYDAE-TGRFV 297 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCT--TC---E--------EEEEEECTT-SSEEEEEEE-CTTSCEEEEEEEETT-TCCEE
T ss_pred eeEEEEEECCCCceEeeccCCCC--ce---e--------EeeEEEECC-CCEEEEEEe-CCCCCeeEEEEEECC-CCcee
Confidence 46799999999987665432111 00 1 235666653 333222221 222334577788888 77 66
Q ss_pred ceeccCCcccCCCCCcccEEE---cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCE-EEEe-CC-eE
Q 035860 250 RIISSSLALRPDVSYEFGVSA---YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPS-LINL-RG-NL 323 (440)
Q Consensus 250 ~~~~~~p~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~-L~~~-~G-~L 323 (440)
+.+.......+........+. ||.+.+....+.. ..|..+|...+....+.... . .... +... +| .|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~--~~l~~~~~~~~~~~~l~~~~--~---~v~~~~~~spdg~~l 370 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW--NHLYLYDTTGRLIRQVTKGE--W---EVTNFAGFDPKGTRL 370 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS--CEEEEEETTSCEEEECCCSS--S---CEEEEEEECTTSSEE
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc--cEEEEEECCCCEEEecCCCC--e---EEEeeeEEcCCCCEE
Confidence 554321111011000112222 7887666654422 47888887776665553211 0 1112 2222 35 45
Q ss_pred EEEEcCCCCCCCCCCccEEEEEEeec
Q 035860 324 ALVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 324 ~lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
++..... ......||.++-
T Consensus 371 ~~~~~~~-------~~~~~~l~~~d~ 389 (706)
T 2z3z_A 371 YFESTEA-------SPLERHFYCIDI 389 (706)
T ss_dssp EEEESSS-------CTTCBEEEEEET
T ss_pred EEEecCC-------CCceEEEEEEEc
Confidence 5555432 223577888764
No 111
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=24.54 E-value=37 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhcCC
Q 035860 41 SMEFPSNIIYNILLRQP 57 (440)
Q Consensus 41 ~~~LP~Dll~eIL~RLP 57 (440)
...||.||-+|||+--.
T Consensus 21 F~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 21 FKQLPADIQEEILSGKS 37 (48)
T ss_dssp TTTSCHHHHHHHTTCCC
T ss_pred HHHCcHHHHHHHHhcch
Confidence 47899999999998654
No 112
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=24.16 E-value=3.3e+02 Score=23.09 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=55.4
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
+|.+|+..... ..|..||. +.++..+.+|.... ....+... +|.|++..... ..+.++-.
T Consensus 156 ~g~l~v~~~~~----~~i~~~~~-~g~~~~~~~~~~~~---~~~~i~~d~~g~l~v~~~~~---------~~i~~~~~-- 216 (300)
T 2qc5_A 156 DNALWFTENQN----NSIGRITN-TGKLEEYPLPTNAA---APVGITSGNDGALWFVEIMG---------NKIGRITT-- 216 (300)
T ss_dssp TSSEEEEETTT----TEEEEECT-TCCEEEEECSSTTC---CEEEEEECTTSSEEEEETTT---------TEEEEECT--
T ss_pred CCCEEEEecCC----CeEEEECC-CCcEEEeeCCCCCC---CcceEEECCCCCEEEEccCC---------CEEEEEcC--
Confidence 47876655433 47999999 67777777665331 22234443 57887776533 44444433
Q ss_pred cCCCcccceeEEeecCCCCCccccccceeeEEE-EEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860 350 HYERNEWSKAYKISTDQDGDRIEEEDFFQYVCS-IVVAGRWMVLDTFRHDNKFVLDLENDDC 410 (440)
Q Consensus 350 ~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~l~~~~~~~~~~yd~~~~~~ 410 (440)
.+ .+.. ..++. . .. .+.+. ...+|. |++.+...+.+..||+ +++.
T Consensus 217 ~g---~~~~-~~~~~-~-------~~--~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 217 TG---EISE-YDIPT-P-------NA--RPHAITAGKNSE-IWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp TC---CEEE-EECSS-T-------TC--CEEEEEECSTTC-EEEEETTTTEEEEECT-TSCE
T ss_pred CC---cEEE-EECCC-C-------CC--CceEEEECCCCC-EEEeccCCCeEEEECC-CCcE
Confidence 21 2222 11221 0 00 12222 222454 7777655578899998 4554
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=23.60 E-value=5.1e+02 Score=28.00 Aligned_cols=192 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred EeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccC
Q 035860 154 YFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIEL 233 (440)
Q Consensus 154 ~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~ 233 (440)
+...+.+++.... ...+.|||..+++.......... .+.++.+.+ .+.+-+.. .
T Consensus 969 ~sp~g~~l~~g~~----~g~i~i~d~~~~~~~~~~~~h~~---------------~v~~l~~s~-dg~~l~s~------~ 1022 (1249)
T 3sfz_A 969 LSPHLEYVAFGDE----DGAIKIIELPNNRVFSSGVGHKK---------------AVRHIQFTA-DGKTLISS------S 1022 (1249)
T ss_dssp ECTTSSEEEEEET----TSCCEEEETTTTSCEEECCCCSS---------------CCCCEEECS-SSSCEEEE------C
T ss_pred EcCCCCEEEEEcC----CCCEEEEEcCCCceeeecccCCC---------------ceEEEEECC-CCCEEEEE------c
Q ss_pred CcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCC
Q 035860 234 SDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRS 313 (440)
Q Consensus 234 ~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~ 313 (440)
..-.+.+|+.. ++............... ...-+|.+.-...++ .|..+|+.+.+....-...... -.
T Consensus 1023 ~dg~i~vwd~~-~~~~~~~~~~~~~v~~~----~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~~---v~ 1089 (1249)
T 3sfz_A 1023 EDSVIQVWNWQ-TGDYVFLQAHQETVKDF----RLLQDSRLLSWSFDG-----TVKVWNVITGRIERDFTCHQGT---VL 1089 (1249)
T ss_dssp SSSBEEEEETT-TTEEECCBCCSSCEEEE----EECSSSEEEEEESSS-----EEEEEETTTTCCCEEEECCSSC---CC
T ss_pred CCCEEEEEECC-CCceEEEecCCCcEEEE----EEcCCCcEEEEECCC-----cEEEEECCCCceeEEEcccCCc---EE
Q ss_pred CEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe
Q 035860 314 PSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD 393 (440)
Q Consensus 314 ~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~ 393 (440)
.--..-+|++.+....+ ..+.||-++. ...+..+...... ..+.....++.+++.
T Consensus 1090 ~~~~s~d~~~l~s~s~d---------~~v~iwd~~~------~~~~~~l~~h~~~----------v~~~~~s~dg~~lat 1144 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSAD---------KTAKIWSFDL------LSPLHELKGHNGC----------VRCSAFSLDGILLAT 1144 (1249)
T ss_dssp CEEECSSSSSCEEECCS---------SCCCEECSSS------SSCSBCCCCCSSC----------EEEEEECSSSSEEEE
T ss_pred EEEECCCCCEEEEEcCC---------CcEEEEECCC------cceeeeeccCCCc----------EEEEEECCCCCEEEE
Q ss_pred ecCCCceEEEECCCCc
Q 035860 394 TFRHDNKFVLDLENDD 409 (440)
Q Consensus 394 ~~~~~~~~~yd~~~~~ 409 (440)
......+.+||+.+++
T Consensus 1145 ~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1145 GDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp EETTSCCCEEESSSSC
T ss_pred EeCCCEEEEEECCCCc
No 114
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=23.50 E-value=4.6e+02 Score=24.57 Aligned_cols=115 Identities=8% Similarity=0.057 Sum_probs=0.0
Q ss_pred ccEEEc----CeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccE
Q 035860 266 FGVSAY----GDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIW 341 (440)
Q Consensus 266 ~~v~~~----G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~ 341 (440)
.++.++ |.||+..... .|..||+.+.....+..+.... ..+.+..-++.|++..... .....
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~-----~I~~id~~~~~v~~~~~~~~~P---~~ia~d~~G~~lyvad~~~------~~~~~ 205 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQH-----PTRLIDFEKEYVSTVYSGLSKV---RTICWTHEADSMIITNDQN------NNDRP 205 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTE-----EEEEEETTTTEEEEEECCCSCE---EEEEECTTSSEEEEEECCS------CTTSE
T ss_pred CEEEECCCCCCeEEEEeCCC-----cEEEEECCCCEEEEEecCCCCc---ceEEEeCCCCEEEEEeCCC------Ccccc
Q ss_pred EEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEc-CcEEEEeecCCCceEEEECCCCc
Q 035860 342 IEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVA-GRWMVLDTFRHDNKFVLDLENDD 409 (440)
Q Consensus 342 l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~l~~~~~~~~~~yd~~~~~ 409 (440)
..+|...+ ..|.....++.... +....... ++.||+......++..||+.++.
T Consensus 206 ~v~~~~~~----g~~~~~~~l~~~~~-----------p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 206 NNYILTRE----SGFKVITELTKGQN-----------CNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp EEEEEEGG----GTSCSEEEEEECSS-----------CCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEeCC----CceeeeeeeccCCC-----------ceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
No 115
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=23.10 E-value=4.4e+02 Score=24.19 Aligned_cols=130 Identities=11% Similarity=0.057 Sum_probs=66.9
Q ss_pred ccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcce
Q 035860 158 YGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYK 237 (440)
Q Consensus 158 ~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 237 (440)
.+.|++... ..+...++.+++...+-.... ...++.+|+..+ +|++.. ...-.
T Consensus 87 ~~~l~~~~~-----~~I~~i~~~~~~~~~~~~~~~----------------~~~gl~~d~~~~--~ly~~D----~~~~~ 139 (386)
T 3v65_B 87 EPVLLFANR-----IDIRQVLPHRSEYTLLLNNLE----------------NAIALDFHHRRE--LVFWSD----VTLDR 139 (386)
T ss_dssp CCEEEEECB-----SCEEEECTTSCCCEEEECSCS----------------CEEEEEEETTTT--EEEEEE----TTTTE
T ss_pred cceeEeecC-----ccceeeccCCCcEEEEecCCC----------------ccEEEEEecCCC--eEEEEe----CCCCc
Confidence 455665554 456667766655443321100 123888887555 333332 12335
Q ss_pred EEEEEeCCCCCcceeccCCcccCCCCCcccEEE---cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCC
Q 035860 238 IAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA---YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSP 314 (440)
Q Consensus 238 ~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~ 314 (440)
+..++.. ++..+.+..... ..+ .++.+ +|.|||..... ..|..+|+....-..+. ..... ...
T Consensus 140 I~r~~~~-g~~~~~~~~~~~--~~p---~glavd~~~g~lY~~d~~~----~~I~~~~~dg~~~~~l~-~~~l~---~P~ 205 (386)
T 3v65_B 140 ILRANLN-GSNVEEVVSTGL--ESP---GGLAVDWVHDKLYWTDSGT----SRIEVANLDGAHRKVLL-WQSLE---KPR 205 (386)
T ss_dssp EEEEETT-SCCEEEEECSSC--SCC---CCEEEETTTTEEEEEETTT----TEEEECBTTSCSCEEEE-CSSCS---CEE
T ss_pred EEEEecC-CCCcEEEEeCCC--CCc---cEEEEEeCCCeEEEEcCCC----CeEEEEeCCCCceEEee-cCCCC---CCc
Confidence 6667766 554444321111 111 14444 58999987765 58999998865543332 22121 222
Q ss_pred EEEEe--CCeEEEEEc
Q 035860 315 SLINL--RGNLALVTF 328 (440)
Q Consensus 315 ~L~~~--~G~L~lv~~ 328 (440)
.|+.- +|.|++...
T Consensus 206 giavdp~~g~ly~td~ 221 (386)
T 3v65_B 206 AIALHPMEGTIYWTDW 221 (386)
T ss_dssp EEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCeEEEecc
Confidence 34444 567777653
No 116
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=22.98 E-value=3.8e+02 Score=23.50 Aligned_cols=54 Identities=20% Similarity=0.079 Sum_probs=35.3
Q ss_pred eEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860 286 TCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKD 349 (440)
Q Consensus 286 ~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~ 349 (440)
..|..||...+....+..|...... ....+...+|.|++..... ..+.+..++.
T Consensus 260 ~~v~~~d~~G~~~~~~~~~~g~~~~-~~~~~~~~~g~L~v~~~~~---------~~i~~~~~~~ 313 (322)
T 2fp8_A 260 PKGIKFDEFGNILEVIPLPPPFAGE-HFEQIQEHDGLLYIGTLFH---------GSVGILVYDK 313 (322)
T ss_dssp EEEEEECTTSCEEEEEECCTTTTTS-CCCEEEEETTEEEEECSSC---------SEEEEEEC--
T ss_pred cEEEEECCCCCEEEEEECCCCCccc-cceEEEEeCCEEEEeecCC---------CceEEEeccc
Confidence 4799999988777888888643111 3334556678988877543 6677766654
No 117
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=22.45 E-value=3.6e+02 Score=22.85 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=31.3
Q ss_pred cCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEe-CCeEEEEEc
Q 035860 271 YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINL-RGNLALVTF 328 (440)
Q Consensus 271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~-~G~L~lv~~ 328 (440)
+|.+|+..... ..|..||.. +++..+.+|.... ....+... +|.|.+...
T Consensus 72 ~g~l~v~~~~~----~~v~~~d~~-g~~~~~~~~~~~~---~~~~i~~~~~g~l~v~~~ 122 (300)
T 2qc5_A 72 LGDIWFTENGA----NKIGKLSKK-GGFTEYPLPQPDS---GPYGITEGLNGDIWFTQL 122 (300)
T ss_dssp TSCEEEEETTT----TEEEEECTT-SCEEEEECSSTTC---CEEEEEECSTTCEEEEET
T ss_pred CCCEEEEecCC----CeEEEECCC-CCeEEecCCCCCC---CCccceECCCCCEEEEcc
Confidence 47776655433 479999998 7777777774321 22234443 578877764
No 118
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=22.33 E-value=31 Score=19.28 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=16.8
Q ss_pred eeeccEEEeeecCCCcceeEEEEcccc
Q 035860 155 FVAYGFICFGESSCHVKDHVHLWNPLR 181 (440)
Q Consensus 155 ~s~~GLlcl~~~~~~~~~~~~V~NP~T 181 (440)
++|.||-|.... +.+-||-|-|
T Consensus 15 dcceglecwkrr-----rsfevcvpkt 36 (37)
T 3s3x_D 15 DCCEGLECWKRR-----RSFEVCVPKT 36 (37)
T ss_dssp CBCTTEEEECCS-----SSCCEEEECC
T ss_pred chhhhHHHHHhc-----cceeeecCCC
Confidence 579999998876 5666777755
No 119
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=22.30 E-value=2.1e+02 Score=25.64 Aligned_cols=140 Identities=9% Similarity=0.090 Sum_probs=60.5
Q ss_pred cceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCcc-EEEe-eCCCCCCCC
Q 035860 235 DYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEE-FKKI-DLPIDCNME 310 (440)
Q Consensus 235 ~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~-~~~i-~lP~~~~~~ 310 (440)
.-.+.||+.. ++.|+.+..+..... . -..+.+ +|.+...+..+ ..|..+|+.++. +..+ .+... .
T Consensus 32 d~~i~iw~~~-~~~~~~~~~~~~h~~-~--v~~~~~s~~~~~l~s~s~d----~~v~vwd~~~~~~~~~~~~~~~~-~-- 100 (377)
T 3dwl_C 32 TNQVELYEQD-GNGWKHARTFSDHDK-I--VTCVDWAPKSNRIVTCSQD----RNAYVYEKRPDGTWKQTLVLLRL-N-- 100 (377)
T ss_dssp SSCBCEEEEE-TTEEEECCCBCCCSS-C--EEEEEECTTTCCEEEEETT----SSEEEC------CCCCEEECCCC-S--
T ss_pred CCEEEEEEcc-CCceEEEEEEecCCc-e--EEEEEEeCCCCEEEEEeCC----CeEEEEEcCCCCceeeeeEeccc-C--
Confidence 4567889999 888776654432100 0 001222 34433333333 368888988876 4322 22221 1
Q ss_pred CCCCE-EEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc
Q 035860 311 PRSPS-LINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR 388 (440)
Q Consensus 311 ~~~~~-L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 388 (440)
.... +... +|.+.+....+ ..+.||-++.. ..|.....+.... ......+ ....+|.
T Consensus 101 -~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~---~~~~~~~~~~~~h-------~~~v~~~-~~~~~~~ 159 (377)
T 3dwl_C 101 -RAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQE---NDWWVSKHLKRPL-------RSTILSL-DWHPNNV 159 (377)
T ss_dssp -SCEEEEECCTTSSCCEEEESS---------SCEEECCC--------CCCCEEECSSC-------CSCEEEE-EECTTSS
T ss_pred -CceEEEEECCCCCEEEEEecC---------CeEEEEEECCc---ccceeeeEeeccc-------CCCeEEE-EEcCCCC
Confidence 1222 2222 45555555443 67999998753 3466665554311 0111111 1112555
Q ss_pred EEEEeecCCCceEEEECCC
Q 035860 389 WMVLDTFRHDNKFVLDLEN 407 (440)
Q Consensus 389 ~i~l~~~~~~~~~~yd~~~ 407 (440)
.++... ....+.+||+.+
T Consensus 160 ~l~~~~-~d~~i~iwd~~~ 177 (377)
T 3dwl_C 160 LLAAGC-ADRKAYVLSAYV 177 (377)
T ss_dssp EEEEEE-SSSCEEEEEECC
T ss_pred EEEEEe-CCCEEEEEEEEe
Confidence 444433 335677888753
No 120
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=22.06 E-value=14 Score=20.42 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.1
Q ss_pred ccEEeeeccEEEee
Q 035860 151 TPIYFVAYGFICFG 164 (440)
Q Consensus 151 ~~i~~s~~GLlcl~ 164 (440)
.-++.+|.||+|+.
T Consensus 14 ~G~i~CC~GLIC~~ 27 (31)
T 1rmk_A 14 LGFVYCCPGLICGP 27 (31)
T ss_dssp TCCCEESTTCCBCS
T ss_pred EEEEEecCCceEee
Confidence 35788999999864
No 121
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=21.68 E-value=5.9e+02 Score=25.30 Aligned_cols=121 Identities=7% Similarity=0.000 Sum_probs=0.0
Q ss_pred cccEEEcCeEEEEEe-cCCCCceEEEEEEc-CCccEEEe-eCCCCCCCC------CCCCEEEE--eCCe----EEEEEcC
Q 035860 265 EFGVSAYGDMHWISF-DQNNIHTCIFSFDF-NKEEFKKI-DLPIDCNME------PRSPSLIN--LRGN----LALVTFP 329 (440)
Q Consensus 265 ~~~v~~~G~lywl~~-~~~~~~~~Il~fD~-~~e~~~~i-~lP~~~~~~------~~~~~L~~--~~G~----L~lv~~~ 329 (440)
..++..+|.+|..+. .. .|.++|. .+++-..- .++...... .....++. .+|+ |++....
T Consensus 56 ~tP~v~~g~vyv~~~~~~-----~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d 130 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN-----NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD 130 (599)
T ss_dssp SCCEEETTEEEEECSTTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT
T ss_pred eccEEECCEEEEEeCCCC-----EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCC
Q ss_pred CCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec-----CCCceEEEE
Q 035860 330 TDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF-----RHDNKFVLD 404 (440)
Q Consensus 330 ~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-----~~~~~~~yd 404 (440)
. .|..|+....+..|... .......+.....-...++.|++... ....+..||
T Consensus 131 g------------~l~AlDa~TG~~~W~~~----------~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 131 G------------NVAALNAETGETVWKVE----------NSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp S------------EEEEEETTTCCEEEEEE----------CCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEE
T ss_pred C------------EEEEEECCCCCEEEeec----------CCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEE
Q ss_pred CCCCcEEE
Q 035860 405 LENDDCHL 412 (440)
Q Consensus 405 ~~~~~~~~ 412 (440)
.+|++..|
T Consensus 189 ~~TG~~~W 196 (599)
T 1w6s_A 189 VKTGEQVW 196 (599)
T ss_dssp TTTCCEEE
T ss_pred CCCCcEEE
No 122
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=21.40 E-value=4.4e+02 Score=23.51 Aligned_cols=120 Identities=11% Similarity=0.048 Sum_probs=62.8
Q ss_pred EEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecccc
Q 035860 153 IYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIE 232 (440)
Q Consensus 153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~ 232 (440)
.++..+|.|.+... .....+.+.++-......+-..... . .. |+.+|+..+ ++....
T Consensus 128 avdp~~g~ly~td~--~~~~~I~r~~~dG~~~~~~~~~~l~-------~-------Pn-glavd~~~~--~lY~aD---- 184 (318)
T 3sov_A 128 ALDPSSGFMYWTDW--GEVPKIERAGMDGSSRFIIINSEIY-------W-------PN-GLTLDYEEQ--KLYWAD---- 184 (318)
T ss_dssp EEEGGGTEEEEEEC--SSSCEEEEEETTSCSCEEEECSSCS-------C-------EE-EEEEETTTT--EEEEEE----
T ss_pred EEeCCCCEEEEEec--CCCCEEEEEEcCCCCeEEEEECCCC-------C-------cc-EEEEeccCC--EEEEEE----
Confidence 34556788777663 1135677777754333222111111 0 12 888887554 343332
Q ss_pred CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCC
Q 035860 233 LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLP 304 (440)
Q Consensus 233 ~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP 304 (440)
...-.+++++.. ...-+.+.... ...+.. .+..++.+||..... ..|..+|..+.+. ..+..|
T Consensus 185 ~~~~~I~~~d~d-G~~~~~~~~~~--~~~P~g--lav~~~~lywtd~~~----~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 185 AKLNFIHKSNLD-GTNRQAVVKGS--LPHPFA--LTLFEDILYWTDWST----HSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp TTTTEEEEEETT-SCSCEEEECSC--CSCEEE--EEEETTEEEEEETTT----TEEEEEETTTCCSCEEEECC
T ss_pred CCCCEEEEEcCC-CCceEEEecCC--CCCceE--EEEeCCEEEEEecCC----CeEEEEECCCCCceEEEeCC
Confidence 234567777776 43333322100 111211 234578999996655 5899999965544 455544
No 123
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.06 E-value=5.6e+02 Score=24.21 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=39.3
Q ss_pred EEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCc-EEEEeecCCCceEEEECCCCcEE
Q 035860 341 WIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGR-WMVLDTFRHDNKFVLDLENDDCH 411 (440)
Q Consensus 341 ~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~l~~~~~~~~~~yd~~~~~~~ 411 (440)
.=+||+++- .++..+.+|+..... ..+ .+..+|+ .+|......+.+.+||..+.+..
T Consensus 349 s~~VsVID~----~T~kvv~~I~vg~~P---------~gi-a~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 349 SRFVVVLNA----ETGERINKIELGHEI---------DSI-NVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEEEET----TTCCEEEEEEEEEEE---------CEE-EECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEEC----CCCeEEEEEECCCCc---------CeE-EEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 457888874 468888899865311 011 2334777 77777666789999999999853
Done!