BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035863
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 25 VKREKIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEE 77
VKRE++ K +NE++ GD+ ++M+ +A L K A+ GG SY +L+ +I++
Sbjct: 424 VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKD 476
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 9 GVGVGIQKWCRIVGDFVKREKIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSY 68
GVG+G++ R D V E+IEK + ++M D+ + + + + +M++ AV +GGSS
Sbjct: 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSL 451
Query: 69 SDLSALIEE 77
+ LI++
Sbjct: 452 ISVGKLIDD 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 9 GVGVGIQKWCRIVGDFVKREKIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSY 68
GVG+G++ R D V E+IEK + ++M D+ + + + + +M++ AV +GGSS
Sbjct: 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSL 451
Query: 69 SDLSALIEE 77
+ LI++
Sbjct: 452 ISVGKLIDD 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 1 MVNEVLKIGVGVGIQKWCRIVGDFVKREKIEKAVNEIMVGDRAEEMRSRAKALGKMAKRA 60
+ VL+IGVGV + +E I+KA+ M ++ MR + L + A +A
Sbjct: 383 LTESVLEIGVGVD--------NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKA 434
Query: 61 VENGGSSYSDLSALIE 76
VE G+S D + LI+
Sbjct: 435 VEQNGTSAMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 1 MVNEVLKIGVGVGIQKWCRIVGDFVKREKIEKAVNEIMVGDRAEEMRSRAKALGKMAKRA 60
MV +VL+IGV RI G + + ++I+ ++ +++R +AL + A RA
Sbjct: 381 MVEDVLEIGV--------RIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRA 432
Query: 61 VENGGSSYSDLSALIE 76
V GSS + L++
Sbjct: 433 VGPKGSSTENFITLVD 448
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 22 GDFVKREKIEKAVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDL-SALIEENCS 80
G KR EK I GD E + LGK AK +E G DL ALIEE
Sbjct: 14 GTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFP 73
Query: 81 RWCN 84
+ N
Sbjct: 74 KHGN 77
>pdb|1N1Q|A Chain A, Crystal Structure Of A Dps Protein From Bacillus Brevis
pdb|1N1Q|B Chain B, Crystal Structure Of A Dps Protein From Bacillus Brevis
pdb|1N1Q|C Chain C, Crystal Structure Of A Dps Protein From Bacillus Brevis
pdb|1N1Q|D Chain D, Crystal Structure Of A Dps Protein From Bacillus Brevis
Length = 149
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 35 NEIMVGDRAEEMRSRAKA-LGKMAKRAVENGGSSYSDLSALIEENCSRWCNSGESA 89
N + ++ EE+ + A + +A+R + GGS + L+A +EE + GESA
Sbjct: 38 NFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEASIKEATGGESA 93
>pdb|3SVT|A Chain A, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE
FROM Mycobacterium Ulcerans
pdb|3SVT|B Chain B, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE
FROM Mycobacterium Ulcerans
Length = 281
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 53 LGKMAKRAVENGGSSYSDLSALIEENCSRWCNS---GESARIFLCEIATEEEG 102
L A+ V GG S+ +S++ N RW + +SA L ++A +E G
Sbjct: 131 LKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELG 183
>pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
Length = 333
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1 MVNEVLKIGVGVGIQKWCRIVGDFVKREKIEKAVNEIMVGD--RAEEMRS 48
MVN++ I G + + +G+ +++ E A+NE +V D RA+ M+S
Sbjct: 100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKS 149
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 2 VNEVLKIGVGVGIQKWCRIVGDFVKREKIEKAVN 35
++EV+ +G I K +++ DF +++EK++N
Sbjct: 337 IDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSIN 370
>pdb|3GE4|A Chain A, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|B Chain B, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|C Chain C, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|D Chain D, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|E Chain E, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|F Chain F, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|G Chain G, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|H Chain H, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|I Chain I, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|J Chain J, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|K Chain K, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|L Chain L, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
Length = 173
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 33 AVNEIMVGDRAEEMRSRAKALGKMAKRAVENGGSSYSDLSALIEEN 78
AV+E++ G RAE + +A+RAV+ GG++Y +++E+
Sbjct: 61 AVHEMLDGFRAE----LDDHVDTIAERAVQIGGTAYGTTQVVVKES 102
>pdb|1PH1|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttggggt
pdb|1PH6|B Chain B, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgtgg
Length = 217
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 30 IEKAVNEIMVGDRAEEMRSRAKALGKMAK------RAVENGGSSYSDLSALIEENCSRWC 83
++ A+N+ + GD ++ A A GK K +A + G +SD S
Sbjct: 149 LQAAINKTVKGDNLVDISKVADAAGKKGKVDAGIVKASASKGDEFSDFS----------F 198
Query: 84 NSGESARIFLCEIATEEEG 102
G +A + + +I +E+G
Sbjct: 199 KEGNTATLKIADIFVQEKG 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,760,165
Number of Sequences: 62578
Number of extensions: 127983
Number of successful extensions: 347
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 23
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)