Query 035867
Match_columns 362
No_of_seqs 120 out of 681
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 1E-107 3E-112 810.3 33.8 345 1-361 24-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.3 0.023 4.9E-07 53.5 17.7 190 62-314 33-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 95.7 0.94 2E-05 41.6 17.0 114 77-226 35-149 (231)
4 TIGR00740 methyltransferase, p 95.6 0.54 1.2E-05 43.7 15.0 106 87-226 53-159 (239)
5 PRK06202 hypothetical protein; 93.9 1.5 3.2E-05 40.6 13.2 116 77-226 50-165 (232)
6 TIGR02716 C20_methyl_CrtF C-20 93.8 2 4.4E-05 41.5 14.5 118 76-230 138-257 (306)
7 PLN02233 ubiquinone biosynthes 92.8 9 0.0002 36.3 20.5 122 74-227 60-182 (261)
8 PF13847 Methyltransf_31: Meth 92.6 0.93 2E-05 38.9 9.1 106 86-226 2-108 (152)
9 TIGR00477 tehB tellurite resis 92.3 0.96 2.1E-05 40.9 9.1 112 74-224 17-129 (195)
10 PF13649 Methyltransf_25: Meth 89.4 1.2 2.7E-05 35.3 6.2 97 91-220 1-99 (101)
11 PRK14103 trans-aconitate 2-met 89.3 4.5 9.8E-05 37.9 11.0 107 77-227 19-125 (255)
12 PF09243 Rsm22: Mitochondrial 88.9 2.4 5.3E-05 40.7 8.9 137 71-249 13-156 (274)
13 PRK12335 tellurite resistance 88.8 3.8 8.2E-05 39.3 10.3 111 76-225 109-220 (287)
14 COG2226 UbiE Methylase involve 88.5 21 0.00046 33.7 14.7 191 63-315 26-221 (238)
15 TIGR03438 probable methyltrans 87.7 5.3 0.00012 38.7 10.5 118 78-226 56-175 (301)
16 PF01209 Ubie_methyltran: ubiE 87.0 2.1 4.4E-05 40.2 7.0 115 78-227 38-153 (233)
17 PF12847 Methyltransf_18: Meth 86.6 3 6.6E-05 33.2 7.0 106 90-227 4-110 (112)
18 PRK11207 tellurite resistance 86.0 8.8 0.00019 34.7 10.4 111 76-225 19-131 (197)
19 PRK01683 trans-aconitate 2-met 82.7 17 0.00038 33.8 11.2 110 76-227 20-129 (258)
20 PRK11036 putative S-adenosyl-L 81.4 13 0.00029 34.7 10.0 113 77-226 35-147 (255)
21 PRK08317 hypothetical protein; 81.2 40 0.00087 30.2 15.3 43 79-127 11-53 (241)
22 TIGR02072 BioC biotin biosynth 81.1 38 0.00083 30.4 12.7 45 76-127 20-67 (240)
23 TIGR01934 MenG_MenH_UbiE ubiqu 80.9 40 0.00088 30.0 16.6 47 75-127 27-73 (223)
24 PF03291 Pox_MCEL: mRNA cappin 80.3 25 0.00054 34.8 11.8 128 76-225 47-183 (331)
25 PLN02336 phosphoethanolamine N 79.3 24 0.00052 36.2 11.8 113 77-226 27-140 (475)
26 COG2227 UbiG 2-polyprenyl-3-me 78.3 6.4 0.00014 37.3 6.5 101 86-226 58-159 (243)
27 PF03848 TehB: Tellurite resis 77.7 37 0.0008 31.0 11.2 111 77-226 20-131 (192)
28 PLN02336 phosphoethanolamine N 77.4 45 0.00098 34.2 13.1 114 75-227 254-368 (475)
29 TIGR02021 BchM-ChlM magnesium 75.4 35 0.00075 31.0 10.5 47 72-127 38-86 (219)
30 PLN02244 tocopherol O-methyltr 75.0 60 0.0013 32.0 12.8 100 87-225 118-220 (340)
31 PLN02396 hexaprenyldihydroxybe 73.3 43 0.00092 33.0 11.1 100 88-227 132-234 (322)
32 PLN02585 magnesium protoporphy 73.2 36 0.00078 33.5 10.5 113 77-226 131-248 (315)
33 smart00138 MeTrc Methyltransfe 72.4 26 0.00057 33.3 9.2 44 85-128 97-142 (264)
34 TIGR03587 Pse_Me-ase pseudamin 72.4 55 0.0012 29.8 11.0 99 90-229 46-144 (204)
35 PF07521 RMMBL: RNA-metabolisi 71.5 8.5 0.00018 26.2 4.1 37 188-226 1-38 (43)
36 PF08241 Methyltransf_11: Meth 71.3 8.4 0.00018 29.1 4.6 93 92-225 1-94 (95)
37 PRK00216 ubiE ubiquinone/menaq 69.8 84 0.0018 28.2 16.8 43 79-127 43-85 (239)
38 PF08242 Methyltransf_12: Meth 69.5 2.7 5.8E-05 33.0 1.5 31 92-129 1-31 (99)
39 TIGR03439 methyl_EasF probable 67.9 69 0.0015 31.6 11.2 154 78-258 69-234 (319)
40 PRK15068 tRNA mo(5)U34 methylt 67.2 81 0.0018 30.9 11.7 114 77-227 112-225 (322)
41 TIGR02081 metW methionine bios 63.7 99 0.0021 27.4 10.7 40 78-127 6-45 (194)
42 PRK11705 cyclopropane fatty ac 62.6 96 0.0021 31.3 11.4 44 76-127 156-199 (383)
43 COG4106 Tam Trans-aconitate me 62.6 32 0.00069 32.5 7.2 108 79-228 22-129 (257)
44 TIGR00452 methyltransferase, p 62.5 90 0.0019 30.7 10.9 114 77-227 111-224 (314)
45 PRK05785 hypothetical protein; 60.2 63 0.0014 29.9 9.0 92 88-225 52-144 (226)
46 PRK05134 bifunctional 3-demeth 59.9 1.4E+02 0.003 27.2 14.2 40 79-127 40-79 (233)
47 PTZ00098 phosphoethanolamine N 57.9 1.4E+02 0.003 28.2 11.1 46 74-127 39-84 (263)
48 PF13679 Methyltransf_32: Meth 57.7 23 0.0005 30.1 5.2 42 83-128 21-63 (141)
49 PF00891 Methyltransf_2: O-met 57.5 64 0.0014 29.7 8.6 44 77-127 90-133 (241)
50 PF02353 CMAS: Mycolic acid cy 55.0 67 0.0015 30.8 8.4 114 76-227 51-165 (273)
51 PLN02446 (5-phosphoribosyl)-5- 54.2 17 0.00038 34.8 4.2 27 84-111 55-81 (262)
52 smart00650 rADc Ribosomal RNA 54.0 1.5E+02 0.0032 25.7 11.0 43 77-128 3-45 (169)
53 PRK09489 rsmC 16S ribosomal RN 53.5 1.8E+02 0.0039 28.9 11.4 116 75-226 184-301 (342)
54 COG1341 Predicted GTPase or GT 52.4 99 0.0022 31.5 9.3 79 189-282 174-253 (398)
55 PRK00274 ksgA 16S ribosomal RN 51.5 86 0.0019 29.8 8.6 56 64-128 14-74 (272)
56 PRK15001 SAM-dependent 23S rib 51.4 1.4E+02 0.0031 30.1 10.5 122 76-227 217-339 (378)
57 PF12147 Methyltransf_20: Puta 50.3 2.6E+02 0.0057 27.5 13.2 118 84-232 132-253 (311)
58 PRK10909 rsmD 16S rRNA m(2)G96 50.0 2E+02 0.0042 26.3 10.3 106 89-232 55-163 (199)
59 PRK00121 trmB tRNA (guanine-N( 48.9 1.7E+02 0.0036 26.4 9.7 35 87-128 40-74 (202)
60 PRK11873 arsM arsenite S-adeno 48.3 2.1E+02 0.0045 26.8 10.6 100 89-226 79-181 (272)
61 PF13489 Methyltransf_23: Meth 48.2 1.6E+02 0.0034 24.4 9.8 34 85-127 20-53 (161)
62 TIGR02085 meth_trns_rumB 23S r 46.6 2.6E+02 0.0057 27.9 11.5 97 90-227 236-333 (374)
63 COG2230 Cfa Cyclopropane fatty 45.6 2.9E+02 0.0064 26.8 11.1 116 72-225 57-173 (283)
64 PRK06922 hypothetical protein; 45.1 1.5E+02 0.0033 32.3 9.9 106 89-226 420-535 (677)
65 TIGR00138 gidB 16S rRNA methyl 44.6 2.3E+02 0.0049 25.2 12.2 96 89-227 44-141 (181)
66 PRK03522 rumB 23S rRNA methylu 44.6 2.5E+02 0.0054 27.2 10.8 99 88-227 174-273 (315)
67 PRK10258 biotin biosynthesis p 43.1 2.7E+02 0.0058 25.6 14.3 44 75-127 30-73 (251)
68 smart00828 PKS_MT Methyltransf 42.5 1.9E+02 0.0041 26.0 9.1 100 90-226 2-102 (224)
69 PRK00107 gidB 16S rRNA methylt 42.1 2.6E+02 0.0056 25.1 11.5 97 88-227 46-144 (187)
70 PRK07580 Mg-protoporphyrin IX 41.9 2.6E+02 0.0056 25.1 11.5 33 86-127 62-94 (230)
71 KOG4300 Predicted methyltransf 39.8 2.8E+02 0.0061 26.1 9.4 122 84-248 73-197 (252)
72 PRK04148 hypothetical protein; 38.9 1.8E+02 0.004 25.0 7.7 79 79-169 8-111 (134)
73 TIGR00091 tRNA (guanine-N(7)-) 38.1 2.7E+02 0.0059 24.7 9.3 34 87-127 16-49 (194)
74 TIGR02129 hisA_euk phosphoribo 34.8 42 0.0009 32.1 3.4 26 84-113 50-75 (253)
75 TIGR00537 hemK_rel_arch HemK-r 34.5 3.1E+02 0.0067 23.8 11.8 29 90-127 22-50 (179)
76 TIGR02469 CbiT precorrin-6Y C5 33.4 1.3E+02 0.0029 23.7 5.9 31 90-127 22-52 (124)
77 PTZ00338 dimethyladenosine tra 33.0 2.1E+02 0.0046 27.7 8.1 42 78-128 27-68 (294)
78 PF07522 DRMBL: DNA repair met 32.7 1.2E+02 0.0027 24.5 5.6 33 186-224 71-103 (110)
79 PF11455 DUF3018: Protein of 32.5 27 0.00059 26.3 1.4 20 297-316 3-22 (65)
80 TIGR01626 ytfJ_HI0045 conserve 31.9 1.8E+02 0.0038 26.4 6.9 133 64-218 13-182 (184)
81 KOG1165 Casein kinase (serine/ 31.9 27 0.00058 35.1 1.6 13 85-97 164-176 (449)
82 COG1093 SUI2 Translation initi 30.8 1.1E+02 0.0024 29.4 5.5 44 115-168 219-262 (269)
83 COG0030 KsgA Dimethyladenosine 29.6 4.3E+02 0.0093 25.3 9.4 44 76-128 19-62 (259)
84 smart00126 IL6 Interleukin-6 h 28.4 1.9E+02 0.0042 25.5 6.3 76 233-308 47-135 (154)
85 COG1500 Predicted exosome subu 28.3 1.8E+02 0.0038 27.5 6.2 76 254-330 75-152 (234)
86 COG0357 GidB Predicted S-adeno 27.3 1.9E+02 0.0041 26.9 6.4 63 88-179 68-131 (215)
87 PTZ00063 histone deacetylase; 27.2 49 0.0011 34.2 2.7 59 188-256 252-316 (436)
88 PRK10507 bifunctional glutathi 27.0 2.1E+02 0.0046 31.0 7.5 85 95-200 354-443 (619)
89 PF15609 PRTase_2: Phosphoribo 27.0 3.8E+02 0.0081 24.6 8.0 70 82-169 117-187 (191)
90 KOG2904 Predicted methyltransf 26.9 88 0.0019 30.6 4.1 45 77-128 135-182 (328)
91 PRK14968 putative methyltransf 26.7 4.1E+02 0.0088 22.7 10.8 32 87-127 23-54 (188)
92 PRK14896 ksgA 16S ribosomal RN 25.4 4.1E+02 0.0089 24.8 8.5 42 78-128 20-61 (258)
93 PRK05723 flavodoxin; Provision 25.2 4.5E+02 0.0097 22.7 10.4 112 120-262 2-118 (151)
94 COG0123 AcuC Deacetylases, inc 24.9 67 0.0015 32.0 3.1 19 85-103 152-172 (340)
95 TIGR01983 UbiG ubiquinone bios 24.7 5E+02 0.011 23.1 10.2 101 87-226 45-147 (224)
96 PRK13255 thiopurine S-methyltr 24.6 5.5E+02 0.012 23.5 10.2 32 88-128 38-69 (218)
97 PRK13168 rumA 23S rRNA m(5)U19 24.2 7.7E+02 0.017 25.1 11.5 106 81-227 291-399 (443)
98 cd06817 PLPDE_III_DSD Type III 24.0 2E+02 0.0042 29.1 6.3 67 88-158 133-206 (389)
99 cd06814 PLPDE_III_DSD_D-TA_lik 23.8 2.5E+02 0.0055 28.2 7.1 76 88-167 135-221 (379)
100 PRK13587 1-(5-phosphoribosyl)- 23.6 1.2E+02 0.0025 28.4 4.3 32 82-113 42-75 (234)
101 PF05175 MTS: Methyltransferas 22.6 2.1E+02 0.0046 24.8 5.6 117 75-225 19-137 (170)
102 PTZ00346 histone deacetylase; 22.5 69 0.0015 33.0 2.7 60 188-257 270-335 (429)
103 TIGR03534 RF_mod_PrmC protein- 22.2 3.2E+02 0.0069 24.8 7.0 34 87-127 87-120 (251)
104 cd02514 GT13_GLCNAC-TI GT13_GL 22.2 1.2E+02 0.0025 30.2 4.2 32 217-253 95-126 (334)
105 COG4783 Putative Zn-dependent 20.5 1.4E+02 0.003 31.2 4.4 52 141-199 72-123 (484)
106 COG2242 CobL Precorrin-6B meth 20.3 2E+02 0.0044 26.2 5.0 39 80-128 27-68 (187)
107 PF02527 GidB: rRNA small subu 20.0 1.6E+02 0.0035 26.5 4.4 59 90-176 51-109 (184)
108 PF02283 CobU: Cobinamide kina 20.0 1.5E+02 0.0033 26.2 4.2 77 146-227 37-122 (167)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.3e-107 Score=810.28 Aligned_cols=345 Identities=37% Similarity=0.690 Sum_probs=320.8
Q ss_pred CcccccCCCCCCCcchHHHHHHHHHHHHhHhcCCCcccccccccCCCCCChhhHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 035867 1 MWMLNELSSPYGDTDQKLSSYFLQALFGRMTDSGERCYRTLSSASDKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIM 80 (362)
Q Consensus 1 ~~~L~~~~S~~Gd~~qRla~yF~~AL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~P~~~fa~~taNqaIl 80 (362)
|+.|++++||+|||+||||+||++||.+||.+++++.|..+......+........+++.|+++|||+||+|||||||||
T Consensus 24 L~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~P~~~fa~~taNqaIl 103 (374)
T PF03514_consen 24 LARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAAYQLFYELSPFLKFAHFTANQAIL 103 (374)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHHHHHHHHHhhHHhhhhhchhHHHH
Confidence 47899999999999999999999999999999999888776543322222334667889999999999999999999999
Q ss_pred hhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcC
Q 035867 81 EAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMG 160 (362)
Q Consensus 81 eA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~g 160 (362)
||++|+++||||||||++|.|||+|||+||.|++|||+||||||++|.+.. ...+++||+||.+||+++|
T Consensus 104 eA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~----------~~~l~~~g~rL~~fA~~lg 173 (374)
T PF03514_consen 104 EAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGS----------ADELQETGRRLAEFARSLG 173 (374)
T ss_pred HHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCc----------HHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999876542 4579999999999999999
Q ss_pred CcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccc----cCcHHHHHHHHHhcCCcEEEEEcccccccCCC
Q 035867 161 VPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAV----DDRRDVLISNLRSLQPRIITVVEEEVDLDVGI 236 (362)
Q Consensus 161 vpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~----~~~~~~~L~~ir~L~P~vvvlvE~ea~~~~~~ 236 (362)
|||||++|. +.+++++++++|++++||+|||||+++|||+.+. .++++.||+.||+|+|+|||++|+|+||
T Consensus 174 v~fef~~v~-~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~---- 248 (374)
T PF03514_consen 174 VPFEFHPVV-VESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQEADH---- 248 (374)
T ss_pred ccEEEEecc-cCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEeecCCC----
Confidence 999999975 4799999999999999999999999999999843 3579999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHH-HchhhhhhhhcCCCCCcccccchhhHHHHHhhCCCccCc
Q 035867 237 DGLEFVKGFQECLRWFRVYFESLDESFTKTSNERLMLERA-AGRAIVDLVACQPSESTERRETATRWSGRLHGAGFSPFM 315 (362)
Q Consensus 237 n~~~F~~RF~eaL~~Y~alfdslda~~~~~~~eR~~iE~~-~g~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~v~ 315 (362)
|+|+|++||.|||+||+|+|||||+++|+++++|..+|+. +|++|+|||||||.+|+||||++++|+.||.+|||+++|
T Consensus 249 n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ 328 (374)
T PF03514_consen 249 NSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMRRAGFRPVP 328 (374)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHHhcCCeecC
Confidence 7899999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC-CCceEEeeCCCeEEEEeCCceeEEEeeee
Q 035867 316 FSDEVCDDVRALLRRYK-EGWSMAQCPDAGIFLSWKDHTVVWASAWR 361 (362)
Q Consensus 316 ls~~~~~qa~~ll~~~~-~g~~~~~~~~~~l~L~Wk~~pL~~~SaW~ 361 (362)
+|++++.|||.||+.|+ +||++.+ +++||+||||++||+++||||
T Consensus 329 ls~~~~~qa~~ll~~~~~~g~~v~~-~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 329 LSEFAVSQAKLLLRKFPGDGYTVEE-DGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred CCHHHHHHHHHHHhccCCCCeEEEE-cCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999997 8999987 589999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.30 E-value=0.023 Score=53.51 Aligned_cols=190 Identities=12% Similarity=0.164 Sum_probs=98.9
Q ss_pred HhcCCchhhhHHHHHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhH
Q 035867 62 QEVSPWTTFGHVACNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAV 141 (362)
Q Consensus 62 ~~~~P~~~fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~ 141 (362)
....|.....|-.++..+-.-+. ..-+|+|+|.|.|.- ...|+.+- ..|..++|||+.+.
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~----~~~l~~~~-~~~~~~v~gvD~S~------------- 92 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAA----TLSVRRNI-HHDNCKIIAIDNSP------------- 92 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHH----HHHHHHhc-CCCCCeEEEEeCCH-------------
Confidence 35688888887776654433333 234799999999863 33343321 12567899998653
Q ss_pred HHHHHHHHHHHHHHHHHcCC--cEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-Hhc
Q 035867 142 QKVMKEIGNRMEKFARLMGV--PFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSL 218 (362)
Q Consensus 142 ~~~l~etg~rL~~fA~~~gv--pfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L 218 (362)
..++.+.+++.+ .|. .++| +. .++.++.. .+.++++ +.+.||++.. ..+..+|+.| +.|
T Consensus 93 -~ml~~A~~~~~~----~~~~~~v~~--~~--~d~~~~~~-----~~~D~vv--~~~~l~~l~~--~~~~~~l~~i~~~L 154 (247)
T PRK15451 93 -AMIERCRRHIDA----YKAPTPVDV--IE--GDIRDIAI-----ENASMVV--LNFTLQFLEP--SERQALLDKIYQGL 154 (247)
T ss_pred -HHHHHHHHHHHh----cCCCCCeEE--Ee--CChhhCCC-----CCCCEEe--hhhHHHhCCH--HHHHHHHHHHHHhc
Confidence 345555454432 343 3444 32 34554422 2233443 4566788852 3355666655 677
Q ss_pred CCcEEE-EEcccccccCCCCCCchHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHchhhhhhhhcCCCCCccccc
Q 035867 219 QPRIIT-VVEEEVDLDVGIDGLEFVKGFQECLRWFRVYFESLDESFTKTSNERLMLERAAGRAIVDLVACQPSESTERRE 297 (362)
Q Consensus 219 ~P~vvv-lvE~ea~~~~~~n~~~F~~RF~eaL~~Y~alfdslda~~~~~~~eR~~iE~~~g~eI~niVa~eg~~R~eR~e 297 (362)
+|.-.+ ++|.-... .+...+.+.+....|. ....++ . ..+++. .....| +-.++
T Consensus 155 kpGG~l~l~e~~~~~-----~~~~~~~~~~~~~~~~-----~~~g~s--~---~ei~~~-~~~~~~---------~~~~~ 209 (247)
T PRK15451 155 NPGGALVLSEKFSFE-----DAKVGELLFNMHHDFK-----RANGYS--E---LEISQK-RSMLEN---------VMLTD 209 (247)
T ss_pred CCCCEEEEEEecCCC-----cchhHHHHHHHHHHHH-----HHcCCC--H---HHHHHH-HHHHHh---------hcccC
Confidence 997554 55632211 2233333333322221 111111 1 111110 011222 23457
Q ss_pred chhhHHHHHhhCCCccC
Q 035867 298 TATRWSGRLHGAGFSPF 314 (362)
Q Consensus 298 ~~~~W~~r~~~aGF~~v 314 (362)
+..+...+|+.|||..+
T Consensus 210 ~~~~~~~~L~~aGF~~v 226 (247)
T PRK15451 210 SVETHKARLHKAGFEHS 226 (247)
T ss_pred CHHHHHHHHHHcCchhH
Confidence 78899999999999763
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.72 E-value=0.94 Score=41.58 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
+.++..+.-...-+|+|+|.|.|. +...|+.+- +|..++|||+.+. ..++.+.+++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~----~~~~la~~~--~~~~~v~gvD~s~--------------~~~~~a~~~~~--- 91 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD----WSIALAEAV--GPEGHVIGLDFSE--------------NMLSVGRQKVK--- 91 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH----HHHHHHHHh--CCCCEEEEEECCH--------------HHHHHHHHHHH---
Confidence 456666653444589999999987 334454431 3456899998643 23433333332
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHH-HHHhcCCcEEEEE
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLIS-NLRSLQPRIITVV 226 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvlv 226 (362)
..+++ ....+. .+.+++... -..=+.|+. .+.+|++. + ...+|+ ..+.|+|.-.+++
T Consensus 92 -~~~~~-~v~~~~--~d~~~~~~~---~~~fD~V~~--~~~l~~~~---~-~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 92 -DAGLH-NVELVH--GNAMELPFD---DNSFDYVTI--GFGLRNVP---D-YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred -hcCCC-ceEEEE--echhcCCCC---CCCccEEEE--ecccccCC---C-HHHHHHHHHHHcCcCeEEEE
Confidence 33443 222232 244443211 111134443 35567764 2 345565 5677899865553
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.59 E-value=0.54 Score=43.69 Aligned_cols=106 Identities=11% Similarity=0.271 Sum_probs=60.1
Q ss_pred CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 035867 87 SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFN 166 (362)
Q Consensus 87 ~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~ 166 (362)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+.+. ..++.+.+++.++. .+.+.+|
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~--------------~ml~~a~~~~~~~~--~~~~v~~- 110 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQ--------------PMVERCRQHIAAYH--SEIPVEI- 110 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCH--------------HHHHHHHHHHHhcC--CCCCeEE-
Confidence 34479999999985 4555554421 2568999998643 24545555543321 1234444
Q ss_pred EeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEE
Q 035867 167 VIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVV 226 (362)
Q Consensus 167 ~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlv 226 (362)
+. .++.++... +..+ |-|.+.||++.. ..+..+|+.+ +.|+|.-.+++
T Consensus 111 -~~--~d~~~~~~~-----~~d~--v~~~~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 111 -LC--NDIRHVEIK-----NASM--VILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred -EE--CChhhCCCC-----CCCE--EeeecchhhCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 32 355544322 2233 445666788852 2345566655 67799988775
No 5
>PRK06202 hypothetical protein; Provisional
Probab=93.94 E-value=1.5 Score=40.59 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=58.0
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
+.+...+...+...|+|+|.|.|. ....|...... ..|..+||||+.+. +.++...++.
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~--------------~~l~~a~~~~---- 108 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDP--------------RAVAFARANP---- 108 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCH--------------HHHHHHHhcc----
Confidence 344333444556789999999996 33222222211 23457899998653 2343332221
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEE
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVV 226 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlv 226 (362)
...++++.. .. .+.+.. .++..=+|-|.+.|||+.+ .....+|+.+.++.-..+++.
T Consensus 109 ~~~~~~~~~--~~----~~~l~~-----~~~~fD~V~~~~~lhh~~d--~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 109 RRPGVTFRQ--AV----SDELVA-----EGERFDVVTSNHFLHHLDD--AEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred ccCCCeEEE--Ee----cccccc-----cCCCccEEEECCeeecCCh--HHHHHHHHHHHHhcCeeEEEe
Confidence 122454433 21 122211 2232333444556899953 224567877766544455443
No 6
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.83 E-value=2 Score=41.48 Aligned_cols=118 Identities=11% Similarity=0.123 Sum_probs=64.7
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKF 155 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~f 155 (362)
.+.|++.+.-.+.-+|+|+|.|.|. +...++.+. |.+++|+++.+ ..++.+.+ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~---------------~~~~~a~~----~ 191 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP---------------GAIDLVNE----N 191 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH---------------HHHHHHHH----H
Confidence 4667777765566799999999984 455555553 66899999753 12433333 3
Q ss_pred HHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEE-EEcccc
Q 035867 156 ARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIIT-VVEEEV 230 (362)
Q Consensus 156 A~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvv-lvE~ea 230 (362)
++..|+.=.++.+. .+..+.. +...+++++. ..||+.. +.....+|+.+ +.|+|.-.+ ++|.-.
T Consensus 192 ~~~~gl~~rv~~~~--~d~~~~~-----~~~~D~v~~~--~~lh~~~--~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 192 AAEKGVADRMRGIA--VDIYKES-----YPEADAVLFC--RILYSAN--EQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred HHhCCccceEEEEe--cCccCCC-----CCCCCEEEeE--hhhhcCC--hHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 44556542233332 2332211 1223444332 3467653 12234567655 788996555 456533
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.78 E-value=9 Score=36.31 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=65.9
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 035867 74 ACNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRME 153 (362)
Q Consensus 74 taNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~ 153 (362)
.....+++.+.-...-+|+|+|.|.|. +...|+.+- +|.-++|||+.+. ..++.+.++..
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~--------------~ml~~A~~r~~ 119 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSS--------------EQLAVAASRQE 119 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCH--------------HHHHHHHHHhh
Confidence 344455555543445689999999997 334555542 2345899998653 34555544432
Q ss_pred HHHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEE-EEc
Q 035867 154 KFARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIIT-VVE 227 (362)
Q Consensus 154 ~fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvv-lvE 227 (362)
..++...-..+|.. .+.+++. ..++..=+|-+.+.||++. ++...+-+..|-|+|.-.+ ++|
T Consensus 120 ~~~~~~~~~i~~~~----~d~~~lp-----~~~~sfD~V~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 120 LKAKSCYKNIEWIE----GDATDLP-----FDDCYFDAITMGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred hhhhccCCCeEEEE----cccccCC-----CCCCCEeEEEEecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 22222222344422 2445442 2333333444667788884 3444444556788998554 344
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=92.64 E-value=0.93 Score=38.90 Aligned_cols=106 Identities=29% Similarity=0.415 Sum_probs=60.5
Q ss_pred CCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-EE
Q 035867 86 ESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP-FE 164 (362)
Q Consensus 86 ~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp-fe 164 (362)
.+..+|+|+|.|.|. +...|+.+- .|..++|||+.+. +.++ +..+.++..+++ .+
T Consensus 2 ~~~~~iLDlGcG~G~----~~~~l~~~~--~~~~~i~gvD~s~--------------~~i~----~a~~~~~~~~~~ni~ 57 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR----LLIQLAKEL--NPGAKIIGVDISE--------------EMIE----YAKKRAKELGLDNIE 57 (152)
T ss_dssp TTTSEEEEET-TTSH----HHHHHHHHS--TTTSEEEEEESSH--------------HHHH----HHHHHHHHTTSTTEE
T ss_pred CCCCEEEEecCcCcH----HHHHHHHhc--CCCCEEEEEECcH--------------HHHH----Hhhcccccccccccc
Confidence 356789999999985 445555321 2345699998653 2333 333456778887 56
Q ss_pred EEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEE
Q 035867 165 FNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVV 226 (362)
Q Consensus 165 F~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlv 226 (362)
|.. .+++++... +. ..=+.++.+ ..+|++. ++...+-+..+.|+|..++++
T Consensus 58 ~~~----~d~~~l~~~-~~-~~~D~I~~~--~~l~~~~---~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 58 FIQ----GDIEDLPQE-LE-EKFDIIISN--GVLHHFP---DPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp EEE----SBTTCGCGC-SS-TTEEEEEEE--STGGGTS---HHHHHHHHHHHHEEEEEEEEE
T ss_pred eEE----eehhccccc-cC-CCeeEEEEc--Cchhhcc---CHHHHHHHHHHHcCCCcEEEE
Confidence 643 366665422 22 222344444 4447774 233334455788899877765
No 9
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=92.29 E-value=0.96 Score=40.92 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=63.5
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 035867 74 ACNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRME 153 (362)
Q Consensus 74 taNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~ 153 (362)
++...|++++.-...-+|+|+|.|.|. +...||.+ + .++|||+.+. ..++.+ .
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~----~a~~la~~-g----~~V~~iD~s~--------------~~l~~a----~ 69 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGR----NSLYLSLA-G----YDVRAWDHNP--------------ASIASV----L 69 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCH----HHHHHHHC-C----CeEEEEECCH--------------HHHHHH----H
Confidence 456788888876556799999999987 33344544 2 3799998653 123322 2
Q ss_pred HHHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEE
Q 035867 154 KFARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIIT 224 (362)
Q Consensus 154 ~fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvv 224 (362)
+.++..|++..+... ++..... . ..=+.++. .+.+|++.. +.++.+++.+ +.|+|.-.+
T Consensus 70 ~~~~~~~~~v~~~~~----d~~~~~~---~-~~fD~I~~--~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 70 DMKARENLPLRTDAY----DINAAAL---N-EDYDFIFS--TVVFMFLQA--GRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred HHHHHhCCCceeEec----cchhccc---c-CCCCEEEE--ecccccCCH--HHHHHHHHHHHHHhCCCcEE
Confidence 344556777444332 2322211 1 11234443 334677742 3456677665 667999763
No 10
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.42 E-value=1.2 Score=35.34 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=50.5
Q ss_pred EEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEeec
Q 035867 91 IVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIHH 170 (362)
Q Consensus 91 IIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~~ 170 (362)
|+|+|.|.|..=..|.+.+ . .+ |..++|||+.++ +.++.+.++. +..|++.+| +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~--~~-~~~~~~gvD~s~--------------~~l~~~~~~~----~~~~~~~~~--~~- 55 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D--AG-PSSRVIGVDISP--------------EMLELAKKRF----SEDGPKVRF--VQ- 55 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-H--------------HHHHHHHHHS----HHTTTTSEE--EE-
T ss_pred CEEeecCCcHHHHHHHHHh-h--hc-ccceEEEEECCH--------------HHHHHHHHhc----hhcCCceEE--EE-
Confidence 7899999997555555554 1 12 568999998653 3455444333 235667777 32
Q ss_pred cCCcccCccccccccCCCe-EEEeccccccccccccCcHHHHHHHHHh-cCC
Q 035867 171 VGDLCDLNLAELDVRSDEA-LAINCIGALHTIAAVDDRRDVLISNLRS-LQP 220 (362)
Q Consensus 171 ~~~~e~l~~~~l~~~~~E~-laVN~~~~Lh~l~~~~~~~~~~L~~ir~-L~P 220 (362)
.++.++. ...+.. +|+.+...+||+. +..+..+|+.+.+ ++|
T Consensus 56 -~D~~~l~-----~~~~~~D~v~~~~~~~~~~~--~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 56 -ADARDLP-----FSDGKFDLVVCSGLSLHHLS--PEELEALLRRIARLLRP 99 (101)
T ss_dssp -SCTTCHH-----HHSSSEEEEEE-TTGGGGSS--HHHHHHHHHHHHHTEEE
T ss_pred -CCHhHCc-----ccCCCeeEEEEcCCccCCCC--HHHHHHHHHHHHHHhCC
Confidence 3555542 223333 3344345588864 3446667766544 344
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.34 E-value=4.5 Score=37.90 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=61.3
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
..+++.+.-...-+|+|+|.|.|. +...|+.+- |..++||++.+. ..++ .|
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~--------------~~~~--------~a 69 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSP--------------EMVA--------AA 69 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCH--------------HHHH--------HH
Confidence 356777765556789999999984 556677663 346899998642 1232 23
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEc
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVE 227 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE 227 (362)
+..++.|. . .+.+++... ..=+.|+. ...|||+. ++...+-+..+.|+|.-.+++.
T Consensus 70 ~~~~~~~~--~----~d~~~~~~~----~~fD~v~~--~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 70 RERGVDAR--T----GDVRDWKPK----PDTDVVVS--NAALQWVP---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred HhcCCcEE--E----cChhhCCCC----CCceEEEE--ehhhhhCC---CHHHHHHHHHHhCCCCcEEEEE
Confidence 33455432 1 244443211 11234444 44568874 3333333456778999877764
No 12
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=88.89 E-value=2.4 Score=40.66 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhc----CCCeeEEEeccCCCCC-CcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHH
Q 035867 71 GHVACNGAIMEAFE----GESKLHIVDISNTYCT-QWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVM 145 (362)
Q Consensus 71 a~~taNqaIleA~~----g~~~VHIIDf~i~~G~-QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l 145 (362)
+++++-..||+.++ +-+--+|+|||.|-|. =|.. .+.+ +-...+|.|+.+. .+
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~---------------~~ 70 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSP---------------EM 70 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCH---------------HH
Confidence 45567777777775 3345689999999884 2432 1222 1235789887542 24
Q ss_pred HHHHHHHHHHHHHcCCcE-EEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEE
Q 035867 146 KEIGNRMEKFARLMGVPF-EFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRII 223 (362)
Q Consensus 146 ~etg~rL~~fA~~~gvpf-eF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vv 223 (362)
.++|++|.+-.. +..- +.. ..+..+...+.+.+-|+ +.+.|-.|.. ..|..+++.+ ..++| ++
T Consensus 71 ~~l~~~l~~~~~--~~~~~~~~--------~~~~~~~~~~~~~DLvi--~s~~L~EL~~--~~r~~lv~~LW~~~~~-~L 135 (274)
T PF09243_consen 71 LELAKRLLRAGP--NNRNAEWR--------RVLYRDFLPFPPDDLVI--ASYVLNELPS--AARAELVRSLWNKTAP-VL 135 (274)
T ss_pred HHHHHHHHhccc--ccccchhh--------hhhhcccccCCCCcEEE--EehhhhcCCc--hHHHHHHHHHHHhccC-cE
Confidence 467787765222 1110 010 11111112222332332 3444556653 5677788777 55566 88
Q ss_pred EEEcccccccCCCCCCchHHHHHHHH
Q 035867 224 TVVEEEVDLDVGIDGLEFVKGFQECL 249 (362)
Q Consensus 224 vlvE~ea~~~~~~n~~~F~~RF~eaL 249 (362)
|+||+..-. +-..+.+.++.|
T Consensus 136 VlVEpGt~~-----Gf~~i~~aR~~l 156 (274)
T PF09243_consen 136 VLVEPGTPA-----GFRRIAEARDQL 156 (274)
T ss_pred EEEcCCChH-----HHHHHHHHHHHH
Confidence 889875322 335566666666
No 13
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.80 E-value=3.8 Score=39.34 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=60.4
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKF 155 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~f 155 (362)
.+.+++++.-.+.=+|+|+|.|.|. +...||.+ + .++|||+.+.. .++ .+.+.
T Consensus 109 ~~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~--------------ai~----~~~~~ 161 (287)
T PRK12335 109 HSEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQ--------------SLE----NLQEI 161 (287)
T ss_pred cHHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHH--------------HHH----HHHHH
Confidence 3445555542222389999999986 34456654 2 58999986531 232 23344
Q ss_pred HHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEE
Q 035867 156 ARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITV 225 (362)
Q Consensus 156 A~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl 225 (362)
|+..|+++++... ++.+...+ ..=+.++.+. .||++. +..+..+++.+ +.|+|.-+.+
T Consensus 162 ~~~~~l~v~~~~~----D~~~~~~~----~~fD~I~~~~--vl~~l~--~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 162 AEKENLNIRTGLY----DINSASIQ----EEYDFILSTV--VLMFLN--RERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred HHHcCCceEEEEe----chhccccc----CCccEEEEcc--hhhhCC--HHHHHHHHHHHHHhcCCCcEEE
Confidence 5666776665332 33332110 1113444333 467774 23456677654 6779987643
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=88.47 E-value=21 Score=33.70 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=111.9
Q ss_pred hcCCchhhh-HHHHHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhH
Q 035867 63 EVSPWTTFG-HVACNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAV 141 (362)
Q Consensus 63 ~~~P~~~fa-~~taNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~ 141 (362)
...+++.|+ |.+=+++..+.+.-.+--+|+|.+.|.|- +.-.|+..-+ .-+|||++.+.
T Consensus 26 ~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd----~a~~~~k~~g---~g~v~~~D~s~------------- 85 (238)
T COG2226 26 LMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD----MALLLAKSVG---TGEVVGLDISE------------- 85 (238)
T ss_pred hhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH----HHHHHHHhcC---CceEEEEECCH-------------
Confidence 356667776 45566777777654478899999999885 3334444433 67899998653
Q ss_pred HHHHHHHHHHHHHHHHHcCCc-EEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHH-HHHhcC
Q 035867 142 QKVMKEIGNRMEKFARLMGVP-FEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLIS-NLRSLQ 219 (362)
Q Consensus 142 ~~~l~etg~rL~~fA~~~gvp-feF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~ 219 (362)
..|+...+|+ +..|+. ++| |. ++.++|. ..+.-.=+|.+.|.||++. ..+.+|+ +-|=|+
T Consensus 86 -~ML~~a~~k~----~~~~~~~i~f--v~--~dAe~LP-----f~D~sFD~vt~~fglrnv~----d~~~aL~E~~RVlK 147 (238)
T COG2226 86 -SMLEVAREKL----KKKGVQNVEF--VV--GDAENLP-----FPDNSFDAVTISFGLRNVT----DIDKALKEMYRVLK 147 (238)
T ss_pred -HHHHHHHHHh----hccCccceEE--EE--echhhCC-----CCCCccCEEEeeehhhcCC----CHHHHHHHHHHhhc
Confidence 3566555554 334433 444 42 4666653 4455555788889999995 3555665 557789
Q ss_pred CcEEEEEcccccccCCCCCCchHHHHHHHHH-HHHH-HHHHhhhccCCCCHHHHHHHHHHchhhhhhhhcCCCCCccccc
Q 035867 220 PRIITVVEEEVDLDVGIDGLEFVKGFQECLR-WFRV-YFESLDESFTKTSNERLMLERAAGRAIVDLVACQPSESTERRE 297 (362)
Q Consensus 220 P~vvvlvE~ea~~~~~~n~~~F~~RF~eaL~-~Y~a-lfdslda~~~~~~~eR~~iE~~~g~eI~niVa~eg~~R~eR~e 297 (362)
|...+++-.=..+ =..-|...++ ||.. ++=.+......+..+...+.. .| +++-
T Consensus 148 pgG~~~vle~~~p--------~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~e----Si------------~~~p 203 (238)
T COG2226 148 PGGRLLVLEFSKP--------DNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAE----SI------------RRFP 203 (238)
T ss_pred CCeEEEEEEcCCC--------CchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHH----HH------------HhCC
Confidence 9987765221111 1223444444 4444 555555544434444433322 22 2334
Q ss_pred chhhHHHHHhhCCCccCc
Q 035867 298 TATRWSGRLHGAGFSPFM 315 (362)
Q Consensus 298 ~~~~W~~r~~~aGF~~v~ 315 (362)
..+.-.+.|..+||..+.
T Consensus 204 ~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 204 DQEELKQMIEKAGFEEVR 221 (238)
T ss_pred CHHHHHHHHHhcCceEEe
Confidence 445666778889997654
No 15
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=87.66 E-value=5.3 Score=38.70 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=69.0
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 035867 78 AIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFAR 157 (362)
Q Consensus 78 aIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~ 157 (362)
.|.+++. ....|||+|.|.|.-=..|++++.. ..++|+|+.+. +.|+.+.++|.+ +
T Consensus 56 ~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~--------------~mL~~a~~~l~~--~ 111 (301)
T TIGR03438 56 EIAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISA--------------DALKESAAALAA--D 111 (301)
T ss_pred HHHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCH--------------HHHHHHHHHHHh--h
Confidence 3555553 2347999999999755567777642 36799998753 357777777653 1
Q ss_pred HcCCcEEEEEeeccCCccc-CccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEE
Q 035867 158 LMGVPFEFNVIHHVGDLCD-LNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVV 226 (362)
Q Consensus 158 ~~gvpfeF~~v~~~~~~e~-l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlv 226 (362)
.-+++ +..+. .+..+ +.... ....+..+++.+...++++. +.....+|+.+ +.|+|.-..++
T Consensus 112 ~p~~~--v~~i~--gD~~~~~~~~~-~~~~~~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 112 YPQLE--VHGIC--ADFTQPLALPP-EPAAGRRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred CCCce--EEEEE--Ecccchhhhhc-ccccCCeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence 12344 44442 34433 11100 11123566777666778774 23345678776 56799766654
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=87.05 E-value=2.1 Score=40.21 Aligned_cols=115 Identities=21% Similarity=0.289 Sum_probs=61.5
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 035867 78 AIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFAR 157 (362)
Q Consensus 78 aIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~ 157 (362)
.+++.+...+--+|+|.+.|.|. +...|+.+-+ |.-+|||++.+ ...|+...+++.+...
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~----~~~~l~~~~~--~~~~v~~vD~s--------------~~ML~~a~~k~~~~~~ 97 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGD----VTRELARRVG--PNGKVVGVDIS--------------PGMLEVARKKLKREGL 97 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSH----HHHHHGGGSS-----EEEEEES---------------HHHHHHHHHHHHHTT-
T ss_pred HHHhccCCCCCCEEEEeCCChHH----HHHHHHHHCC--CccEEEEecCC--------------HHHHHHHHHHHHhhCC
Confidence 45555666667799999999995 3344454422 44589999864 2457666666654322
Q ss_pred HcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEE-Ec
Q 035867 158 LMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITV-VE 227 (362)
Q Consensus 158 ~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvl-vE 227 (362)
. +.+| +. .+.+++ ...++..=+|-|.|.||++. +....+=+..|-|+|.-.++ +|
T Consensus 98 ~---~i~~--v~--~da~~l-----p~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 98 Q---NIEF--VQ--GDAEDL-----PFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp ----SEEE--EE---BTTB-------S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C---CeeE--EE--cCHHHh-----cCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEee
Confidence 1 3444 32 355554 34456666788999999985 33344445678889976544 44
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=86.62 E-value=3 Score=33.21 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=58.8
Q ss_pred EEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEee
Q 035867 90 HIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIH 169 (362)
Q Consensus 90 HIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~ 169 (362)
+|+|+|-|.|. +...|+.+ .|..++|||+.+. ..++...++..+ ...+-..+|..
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~---~~~~~v~gvD~s~--------------~~~~~a~~~~~~--~~~~~~i~~~~-- 58 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARL---FPGARVVGVDISP--------------EMLEIARERAAE--EGLSDRITFVQ-- 58 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHH---HTTSEEEEEESSH--------------HHHHHHHHHHHH--TTTTTTEEEEE--
T ss_pred EEEEEcCcCCH----HHHHHHhc---CCCCEEEEEeCCH--------------HHHHHHHHHHHh--cCCCCCeEEEE--
Confidence 68999999985 44455542 1446799998643 345555444422 22334555532
Q ss_pred ccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEEc
Q 035867 170 HVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVVE 227 (362)
Q Consensus 170 ~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlvE 227 (362)
.++ ....+. ..+=+.++.+. +.+|++... ..+..+|+.+ +.|+|.-.++++
T Consensus 59 --~d~-~~~~~~--~~~~D~v~~~~-~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 59 --GDA-EFDPDF--LEPFDLVICSG-FTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp --SCC-HGGTTT--SSCEEEEEECS-GSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --Ccc-ccCccc--CCCCCEEEECC-Cccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 244 111111 11223555555 566766543 3456677755 577999888764
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=85.95 E-value=8.8 Score=34.66 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=60.3
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKF 155 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~f 155 (362)
++.+++.+.....-.|+|+|.|.|. +...||.+ + .++|||+.+. ..++... + .
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~--------------~~i~~a~-~---~ 71 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNP--------------MSIANLE-R---I 71 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCH--------------HHHHHHH-H---H
Confidence 4556666654455689999999986 34456655 2 3799998643 2233322 2 2
Q ss_pred HHHcCCc-EEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEE
Q 035867 156 ARLMGVP-FEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITV 225 (362)
Q Consensus 156 A~~~gvp-feF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl 225 (362)
++..|++ .++.. .++.++... ..=+.|+.| +.+|++. ++.++.+++.+ +.|+|.-.++
T Consensus 72 ~~~~~~~~v~~~~----~d~~~~~~~----~~fD~I~~~--~~~~~~~--~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 72 KAAENLDNLHTAV----VDLNNLTFD----GEYDFILST--VVLMFLE--AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred HHHcCCCcceEEe----cChhhCCcC----CCcCEEEEe--cchhhCC--HHHHHHHHHHHHHHcCCCcEEE
Confidence 3334554 33322 244443221 112344433 3457764 23466667654 6679998754
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=82.73 E-value=17 Score=33.81 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=61.9
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKF 155 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~f 155 (362)
+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+.+. ..++.+.+++
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~--------------~~i~~a~~~~--- 75 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSP--------------AMLAEARSRL--- 75 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCH--------------HHHHHHHHhC---
Confidence 5567777765566789999999983 445666553 346899998642 2333332221
Q ss_pred HHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEc
Q 035867 156 ARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVE 227 (362)
Q Consensus 156 A~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE 227 (362)
-..+|.. .+++++.+. ..=+.++ |...||++. +....+-+..+.|+|.-.+++.
T Consensus 76 -----~~~~~~~----~d~~~~~~~----~~fD~v~--~~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 76 -----PDCQFVE----ADIASWQPP----QALDLIF--ANASLQWLP---DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -----CCCeEEE----CchhccCCC----CCccEEE--EccChhhCC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 1233422 244433211 1112343 445678874 3334444555778999888774
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.41 E-value=13 Score=34.72 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=62.3
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++|+|+.+. +.++.+.++ +
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~--------------~~l~~a~~~----~ 86 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSA--------------EMIQRAKQA----A 86 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCH--------------HHHHHHHHH----H
Confidence 45677665 344699999999994 55666665 2 4799998643 234443333 3
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEE
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVV 226 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlv 226 (362)
+..|+.-....+. .+..++.. ..++..=+|-|...||++. ++.+.+-...+-|+|.-.+++
T Consensus 87 ~~~g~~~~v~~~~--~d~~~l~~----~~~~~fD~V~~~~vl~~~~---~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 87 EAKGVSDNMQFIH--CAAQDIAQ----HLETPVDLILFHAVLEWVA---DPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HhcCCccceEEEE--cCHHHHhh----hcCCCCCEEEehhHHHhhC---CHHHHHHHHHHHcCCCeEEEE
Confidence 4455532233332 34444321 1122222233555578874 344444455677899988764
No 21
>PRK08317 hypothetical protein; Provisional
Probab=81.23 E-value=40 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 79 IMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 79 IleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
+++.+.-...-+|+|+|.|.|. +...++.+- +|.-++||++.+
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~----~~~~~a~~~--~~~~~v~~~d~~ 53 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN----DARELARRV--GPEGRVVGIDRS 53 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH----HHHHHHHhc--CCCcEEEEEeCC
Confidence 5666665556689999999874 333444432 245689999864
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=81.11 E-value=38 Score=30.43 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHhhhcC---CCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 76 NGAIMEAFEG---ESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 76 NqaIleA~~g---~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
.+.+++.+.. .+..+|+|+|.|.|. +...|+.+- |..++|+++.+
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~----~~~~l~~~~---~~~~~~~~D~~ 67 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGY----LTRALLKRF---PQAEFIALDIS 67 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccH----HHHHHHHhC---CCCcEEEEeCh
Confidence 3334444442 334689999999985 333444431 45679999864
No 23
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=80.94 E-value=40 Score=30.01 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=30.8
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 75 CNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 75 aNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
..+.+++.+...+...|+|+|.|.|. +...++.+- |+..++++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~ 73 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFS 73 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECC
Confidence 34556666665567799999999885 334444432 334789999864
No 24
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=80.33 E-value=25 Score=34.82 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=69.9
Q ss_pred HHHHHhhhc----CCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHH
Q 035867 76 NGAIMEAFE----GESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNR 151 (362)
Q Consensus 76 NqaIleA~~----g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~r 151 (362)
..-|-+.+. .....+|+|++.|.|. -|.+-...+. =++.||+.+ ..+++++.+|
T Consensus 47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis--------------~~si~ea~~R 104 (331)
T PF03291_consen 47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDIS--------------EESIEEARER 104 (331)
T ss_dssp HHHHHHHCHCCCCTTTT-EEEEET-TTTT---THHHHHHTT------SEEEEEES---------------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCC--------------HHHHHHHHHH
Confidence 344555554 2277999999999887 4555554432 246777753 3568888888
Q ss_pred HHHHHHHc---CCcEEEEEeeccCC-cccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEE
Q 035867 152 MEKFARLM---GVPFEFNVIHHVGD-LCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITV 225 (362)
Q Consensus 152 L~~fA~~~---gvpfeF~~v~~~~~-~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl 225 (362)
..+.-+.. ...+.|.+.....+ ..+--.+.+.-..+..=+|+|.|.||...........+|+.| ..|+|.-+++
T Consensus 105 y~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 105 YKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp HHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 75544321 23344433211111 111001111122346778999999999986444455566655 6779988776
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=79.34 E-value=24 Score=36.25 Aligned_cols=113 Identities=11% Similarity=0.087 Sum_probs=60.0
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
..|++.+.....-+|+|+|.|.|. +...|+.+. -++|||+.+. ..++.. ..+ .
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~----~~~~la~~~-----~~v~giD~s~--------------~~l~~a-~~~---~ 79 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGR----FTGELAKKA-----GQVIALDFIE--------------SVIKKN-ESI---N 79 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCH----HHHHHHhhC-----CEEEEEeCCH--------------HHHHHH-HHH---h
Confidence 455666654444489999999995 445566542 1689998543 233321 111 1
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEE
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVV 226 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlv 226 (362)
. ..-..+|.. .++.+.. +...++..=+|-|.+.+||+.. .....+|+.+ +-|+|.-.++.
T Consensus 80 ~-~~~~i~~~~----~d~~~~~---~~~~~~~fD~I~~~~~l~~l~~--~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 80 G-HYKNVKFMC----ADVTSPD---LNISDGSVDLIFSNWLLMYLSD--KEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred c-cCCceEEEE----ecccccc---cCCCCCCEEEEehhhhHHhCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 1 111233322 2332211 1222333334555667899852 2356677655 55899988775
No 26
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=78.33 E-value=6.4 Score=37.26 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=67.7
Q ss_pred CCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEE
Q 035867 86 ESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEF 165 (362)
Q Consensus 86 ~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF 165 (362)
-...-|.|+|.|.| .|-+.+|... ..+|||+.+.. .++.. + ..|..-|+..+|
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~G-----a~VtgiD~se~--------------~I~~A-k---~ha~e~gv~i~y 110 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARLG-----ASVTGIDASEK--------------PIEVA-K---LHALESGVNIDY 110 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHCC-----CeeEEecCChH--------------HHHHH-H---Hhhhhccccccc
Confidence 35677999999988 7888898763 78999987542 34332 2 467788888888
Q ss_pred EEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHH-HHHhcCCcEEEEE
Q 035867 166 NVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLIS-NLRSLQPRIITVV 226 (362)
Q Consensus 166 ~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvlv 226 (362)
... ..|++.... +-.=||-|+=-|+|+. +|.. |++ ..+-++|.-+++.
T Consensus 111 ~~~----~~edl~~~~-----~~FDvV~cmEVlEHv~---dp~~-~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 111 RQA----TVEDLASAG-----GQFDVVTCMEVLEHVP---DPES-FLRACAKLVKPGGILFL 159 (243)
T ss_pred hhh----hHHHHHhcC-----CCccEEEEhhHHHccC---CHHH-HHHHHHHHcCCCcEEEE
Confidence 765 345553321 2233566877789995 4544 555 5566699877764
No 27
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=77.71 E-value=37 Score=31.01 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=66.6
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
..+++|++--+.-.++|+|-|.|. =---||.+. ..+|+++.+.. .+ ++|.+.|
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GR----NalyLA~~G-----~~VtAvD~s~~--------------al----~~l~~~a 72 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGR----NALYLASQG-----FDVTAVDISPV--------------AL----EKLQRLA 72 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSH----HHHHHHHTT------EEEEEESSHH--------------HH----HHHHHHH
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcH----HHHHHHHCC-----CeEEEEECCHH--------------HH----HHHHHHH
Confidence 457777776666789999999985 122466552 67999986531 23 3566788
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHH-hcCCcEEEEE
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLR-SLQPRIITVV 226 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir-~L~P~vvvlv 226 (362)
+.-+++.+.... ++++... +++.=+|++...++++. ...++.+++.++ .++|.-+.+.
T Consensus 73 ~~~~l~i~~~~~----Dl~~~~~------~~~yD~I~st~v~~fL~--~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 73 EEEGLDIRTRVA----DLNDFDF------PEEYDFIVSTVVFMFLQ--RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp HHTT-TEEEEE-----BGCCBS-------TTTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhcCceeEEEEe----cchhccc------cCCcCEEEEEEEeccCC--HHHHHHHHHHHHhhcCCcEEEEE
Confidence 888999666543 5554432 12333455655667775 345777887775 4699766554
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=77.37 E-value=45 Score=34.18 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=64.6
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 035867 75 CNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEK 154 (362)
Q Consensus 75 aNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~ 154 (362)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+. ..++.+.++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~--------------~~l~~A~~~--- 308 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSV--------------NMISFALER--- 308 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCH--------------HHHHHHHHH---
Confidence 34556666653445689999999985 4455666542 4899998653 234333322
Q ss_pred HHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHH-HHHHhcCCcEEEEEc
Q 035867 155 FARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLI-SNLRSLQPRIITVVE 227 (362)
Q Consensus 155 fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L-~~ir~L~P~vvvlvE 227 (362)
+...+...+|... ++.+.. ..++..=+|-|...++|+. ++ +.+| +..+.|+|.-.+++.
T Consensus 309 -~~~~~~~v~~~~~----d~~~~~-----~~~~~fD~I~s~~~l~h~~---d~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 309 -AIGRKCSVEFEVA----DCTKKT-----YPDNSFDVIYSRDTILHIQ---DK-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred -hhcCCCceEEEEc----CcccCC-----CCCCCEEEEEECCcccccC---CH-HHHHHHHHHHcCCCeEEEEE
Confidence 2233445555332 333322 1223233445555678884 33 3455 455778999888754
No 29
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=75.36 E-value=35 Score=30.99 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhc--CCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 72 HVACNGAIMEAFE--GESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 72 ~~taNqaIleA~~--g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
+-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+. .++|||+.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s 86 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS 86 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC
Confidence 4445667777776 2456799999999985 566666542 379999864
No 30
>PLN02244 tocopherol O-methyltransferase
Probab=74.99 E-value=60 Score=32.00 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=55.9
Q ss_pred CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC--cEE
Q 035867 87 SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGV--PFE 164 (362)
Q Consensus 87 ~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gv--pfe 164 (362)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+. ..++.. + +.++..|+ ..+
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~--------------~~i~~a-~---~~~~~~g~~~~v~ 171 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSP--------------VQAARA-N---ALAAAQGLSDKVS 171 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCH--------------HHHHHH-H---HHHHhcCCCCceE
Confidence 34579999999885 4556666543 3799998642 123222 2 23444455 355
Q ss_pred EEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHH-HHHHhcCCcEEEE
Q 035867 165 FNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLI-SNLRSLQPRIITV 225 (362)
Q Consensus 165 F~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L-~~ir~L~P~vvvl 225 (362)
|.. .+..++. ..++..=+|-|...+||+. + ...+| +..|-|+|.-.++
T Consensus 172 ~~~----~D~~~~~-----~~~~~FD~V~s~~~~~h~~---d-~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 172 FQV----ADALNQP-----FEDGQFDLVWSMESGEHMP---D-KRKFVQELARVAAPGGRII 220 (340)
T ss_pred EEE----cCcccCC-----CCCCCccEEEECCchhccC---C-HHHHHHHHHHHcCCCcEEE
Confidence 532 2444432 2233333445566788885 3 34455 4567789975554
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=73.29 E-value=43 Score=33.04 Aligned_cols=100 Identities=21% Similarity=0.133 Sum_probs=55.1
Q ss_pred eeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC--cEEE
Q 035867 88 KLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGV--PFEF 165 (362)
Q Consensus 88 ~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gv--pfeF 165 (362)
.-.|+|+|.|.|. +...|+.+ + .++|||+.+. +.++...++ ++..++ ..+|
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~--------------~~i~~Ar~~----~~~~~~~~~i~~ 184 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVD--------------KNVKIARLH----ADMDPVTSTIEY 184 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCH--------------HHHHHHHHH----HHhcCcccceeE
Confidence 3479999999987 45577643 3 4799998643 233322221 222222 3444
Q ss_pred EEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEEc
Q 035867 166 NVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVVE 227 (362)
Q Consensus 166 ~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlvE 227 (362)
.. .+.+++.. .++..=+|-|...|||+.+ .+.+|+.+ +-|+|.-.+++.
T Consensus 185 ~~----~dae~l~~-----~~~~FD~Vi~~~vLeHv~d----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 185 LC----TTAEKLAD-----EGRKFDAVLSLEVIEHVAN----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred Ee----cCHHHhhh-----ccCCCCEEEEhhHHHhcCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 22 24454422 1222223445556799852 35567665 456998888763
No 32
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=73.18 E-value=36 Score=33.47 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHhhhcC---CCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEG---ESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRME 153 (362)
Q Consensus 77 qaIleA~~g---~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~ 153 (362)
+.+++.++. .+.-.|+|+|.|.|. +...|+.+ + .++|||+.+. ..++...++..
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~--------------~ml~~A~~~~~ 187 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISA--------------AMVAEAERRAK 187 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCH--------------HHHHHHHHHHH
Confidence 445555542 245689999999886 45566654 2 4799998653 34554444432
Q ss_pred HHH-HHc-CCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEE
Q 035867 154 KFA-RLM-GVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVV 226 (362)
Q Consensus 154 ~fA-~~~-gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlv 226 (362)
+.- ... +...+|... ++++++ .. - + +|-|...|||+.. +....+++.++.+.|..+++.
T Consensus 188 ~~~~~~~~~~~~~f~~~----Dl~~l~-~~----f-D--~Vv~~~vL~H~p~--~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 188 EALAALPPEVLPKFEAN----DLESLS-GK----Y-D--TVTCLDVLIHYPQ--DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hcccccccccceEEEEc----chhhcC-CC----c-C--EEEEcCEEEecCH--HHHHHHHHHHHhhcCCEEEEE
Confidence 110 001 233455332 444331 11 1 2 2335556677752 345567888888888877774
No 33
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=72.42 E-value=26 Score=33.27 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=31.3
Q ss_pred CCCeeEEEeccCCCCCCcHHHHHHHhcCCC--CCCeeEEEEeccCC
Q 035867 85 GESKLHIVDISNTYCTQWPTLLEALATRTD--DTPHLRLTTVVTSK 128 (362)
Q Consensus 85 g~~~VHIIDf~i~~G~QWpsLiq~La~R~~--gpP~lrIT~i~~~~ 128 (362)
..+.++|.|.|.+.|--.-+|--.|++.-. ..+..+|+|++.+.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~ 142 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL 142 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH
Confidence 446799999999999876666555554322 13468999998753
No 34
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=72.38 E-value=55 Score=29.80 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=53.1
Q ss_pred EEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEee
Q 035867 90 HIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIH 169 (362)
Q Consensus 90 HIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~ 169 (362)
.|+|+|.|.|.. +..|+..- |..++|||+.+. ..++.+.+++ -++. +..
T Consensus 46 ~VLDiGCG~G~~----~~~L~~~~---~~~~v~giDiS~--------------~~l~~A~~~~------~~~~--~~~-- 94 (204)
T TIGR03587 46 SILELGANIGMN----LAALKRLL---PFKHIYGVEINE--------------YAVEKAKAYL------PNIN--IIQ-- 94 (204)
T ss_pred cEEEEecCCCHH----HHHHHHhC---CCCeEEEEECCH--------------HHHHHHHhhC------CCCc--EEE--
Confidence 499999999953 34444331 235799998653 2344332221 1222 221
Q ss_pred ccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEccc
Q 035867 170 HVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVEEE 229 (362)
Q Consensus 170 ~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE~e 229 (362)
.++.+ + ..++..=+|-|...|||+. ++.+..+++.+.+..-+.++++|-.
T Consensus 95 --~d~~~--~----~~~~sfD~V~~~~vL~hl~--p~~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 95 --GSLFD--P----FKDNFFDLVLTKGVLIHIN--PDNLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred --eeccC--C----CCCCCEEEEEECChhhhCC--HHHHHHHHHHHHhhcCcEEEEEEee
Confidence 12222 1 1222222233555568884 3456777887777776778887754
No 35
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=71.51 E-value=8.5 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=25.0
Q ss_pred CeEEEeccc-cccccccccCcHHHHHHHHHhcCCcEEEEE
Q 035867 188 EALAINCIG-ALHTIAAVDDRRDVLISNLRSLQPRIITVV 226 (362)
Q Consensus 188 E~laVN~~~-~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlv 226 (362)
|.+-|||.. .++ +. ....++.+++.|+.++|+-+++|
T Consensus 1 e~i~v~a~v~~~~-fS-gHad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQID-FS-GHADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESG-CS-SS-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEe-ec-CCCCHHHHHHHHHhcCCCEEEEe
Confidence 456677743 344 43 34568889999999999999997
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=71.27 E-value=8.4 Score=29.09 Aligned_cols=93 Identities=24% Similarity=0.255 Sum_probs=48.8
Q ss_pred EeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEeecc
Q 035867 92 VDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIHHV 171 (362)
Q Consensus 92 IDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~~~ 171 (362)
+|+|.|.|.... .|+.+ +..++|+++.+. ..++...++ .+..+++ | + .
T Consensus 1 LdiG~G~G~~~~----~l~~~----~~~~v~~~D~~~--------------~~~~~~~~~----~~~~~~~--~--~--~ 48 (95)
T PF08241_consen 1 LDIGCGTGRFAA----ALAKR----GGASVTGIDISE--------------EMLEQARKR----LKNEGVS--F--R--Q 48 (95)
T ss_dssp EEET-TTSHHHH----HHHHT----TTCEEEEEES-H--------------HHHHHHHHH----TTTSTEE--E--E--E
T ss_pred CEecCcCCHHHH----HHHhc----cCCEEEEEeCCH--------------HHHHHHHhc----ccccCch--h--e--e
Confidence 588888776443 44444 346799998642 234333332 2233344 2 2 1
Q ss_pred CCcccCccccccccCCCeEEEeccccccccccccCcHHHHHH-HHHhcCCcEEEE
Q 035867 172 GDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLIS-NLRSLQPRIITV 225 (362)
Q Consensus 172 ~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvl 225 (362)
.+.+++ ...++-.=+|-+...+||+ ..++.+++ ..|-|+|.-..+
T Consensus 49 ~d~~~l-----~~~~~sfD~v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 49 GDAEDL-----PFPDNSFDVVFSNSVLHHL----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SBTTSS-----SS-TT-EEEEEEESHGGGS----SHHHHHHHHHHHHEEEEEEEE
T ss_pred ehHHhC-----ccccccccccccccceeec----cCHHHHHHHHHHHcCcCeEEe
Confidence 244444 3445555466677777888 23445554 557778876654
No 37
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=69.78 E-value=84 Score=28.24 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=27.1
Q ss_pred HHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 79 IMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 79 IleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
+++.+.-....+|+|+|.|.|. +...++.+- |+..++|+++.+
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~~--~~~~~v~~~D~s 85 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKAV--GKTGEVVGLDFS 85 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHHc--CCCCeEEEEeCC
Confidence 4444443345789999999985 333343332 346789999864
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=69.53 E-value=2.7 Score=33.02 Aligned_cols=31 Identities=35% Similarity=0.342 Sum_probs=20.4
Q ss_pred EeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCC
Q 035867 92 VDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKP 129 (362)
Q Consensus 92 IDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~ 129 (362)
+|+|-|.|.==..|++.+ |..++|+++.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~ 31 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPS 31 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSS
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHH
Confidence 478888886444455544 7899999998765
No 39
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=67.88 E-value=69 Score=31.58 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=85.2
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 035867 78 AIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFAR 157 (362)
Q Consensus 78 aIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~ 157 (362)
.|.+++. ....|||||.|.|..=..||++|... +. ..+-.+|+.+. +.|+++.++|.
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS~--------------~~L~~a~~~L~---- 125 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVSR--------------SELQRTLAELP---- 125 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECCH--------------HHHHHHHHhhh----
Confidence 4555553 23379999999999999999999732 22 25667787653 46788888775
Q ss_pred HcCCc-EEEEEeeccCCcccC-c-cccccccCCCeEEEeccccccccccccCcHHHHHHHHHh--cCCcEEEEEcccccc
Q 035867 158 LMGVP-FEFNVIHHVGDLCDL-N-LAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRS--LQPRIITVVEEEVDL 232 (362)
Q Consensus 158 ~~gvp-feF~~v~~~~~~e~l-~-~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~--L~P~vvvlvE~ea~~ 232 (362)
.-..| .++++|. ++.++. . .........-.++.-.-..+.++. +.....||+.+++ |+|.-..++=-|...
T Consensus 126 ~~~~p~l~v~~l~--gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~--~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 126 LGNFSHVRCAGLL--GTYDDGLAWLKRPENRSRPTTILWLGSSIGNFS--RPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred hccCCCeEEEEEE--ecHHHHHhhcccccccCCccEEEEeCccccCCC--HHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 12345 7888874 343321 1 000011112233333334455553 2335579999987 888766654222211
Q ss_pred cC-----CCCCC-ch-HHHHHHHHHHHHHHHHH
Q 035867 233 DV-----GIDGL-EF-VKGFQECLRWFRVYFES 258 (362)
Q Consensus 233 ~~-----~~n~~-~F-~~RF~eaL~~Y~alfds 258 (362)
+. .+|.+ .. ..-..+.|++-...++.
T Consensus 202 ~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 202 DPDKVLRAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred CHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 00 12222 22 33345666776666654
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=67.24 E-value=81 Score=30.92 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=58.0
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
+.|++.+..-+--+|+|+|.|.|. +...++.+ |+- +++||+.+. ..+.+. +...+++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g~~--~V~GiD~S~--------------~~l~q~-~a~~~~~ 168 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--GAK--LVVGIDPSQ--------------LFLCQF-EAVRKLL 168 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCCH--------------HHHHHH-HHHHHhc
Confidence 344555542233479999999985 34455554 222 489998542 112111 1111222
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEc
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVE 227 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE 227 (362)
. ...+.+|... +++++.. -..=++| -|...|||+. ++.+.+-+.-+.|+|.-.++.|
T Consensus 169 ~-~~~~i~~~~~----d~e~lp~----~~~FD~V--~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 169 G-NDQRAHLLPL----GIEQLPA----LKAFDTV--FSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred C-CCCCeEEEeC----CHHHCCC----cCCcCEE--EECChhhccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 1 1234455332 4555422 0111333 3445578874 5666555666788998777654
No 41
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=63.69 E-value=99 Score=27.45 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 78 AIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 78 aIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
.|.+.+... -+|+|+|.|.|. +++.|+.+.+ .+++||+.+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s 45 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEID 45 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCC
Confidence 445555433 379999999985 5667765532 356888753
No 42
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=62.61 E-value=96 Score=31.25 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=28.6
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
-..|++.+.-...=+|+|+|.|.|. +...++.+.+ .++|||+.+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS 199 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS 199 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC
Confidence 3455565543444589999988774 5555665543 479999864
No 43
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=62.59 E-value=32 Score=32.45 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=67.6
Q ss_pred HHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 035867 79 IMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARL 158 (362)
Q Consensus 79 IleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~ 158 (362)
++.-+.-+.--.|+|+|.|-|.+ -+-|+.|= |.=.||||+++. +.|++..+|
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGns----TelL~~Rw---P~A~i~GiDsS~--------------~Mla~Aa~r------- 73 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNS----TELLARRW---PDAVITGIDSSP--------------AMLAKAAQR------- 73 (257)
T ss_pred HHhhCCccccceeeecCCCCCHH----HHHHHHhC---CCCeEeeccCCH--------------HHHHHHHHh-------
Confidence 34445556667899999999974 45566664 445699998652 456554444
Q ss_pred cCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEcc
Q 035867 159 MGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVEE 228 (362)
Q Consensus 159 ~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE~ 228 (362)
....+|.. .++.+.+++ .+-..|.-|.+| |-+. +.-+.|=+.+-.|.|.-+.-|--
T Consensus 74 -lp~~~f~~----aDl~~w~p~----~~~dllfaNAvl--qWlp---dH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 74 -LPDATFEE----ADLRTWKPE----QPTDLLFANAVL--QWLP---DHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred -CCCCceec----ccHhhcCCC----Cccchhhhhhhh--hhcc---ccHHHHHHHHHhhCCCceEEEEC
Confidence 45555633 244544443 233456667765 4443 45566778889999999887743
No 44
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=62.46 E-value=90 Score=30.68 Aligned_cols=114 Identities=10% Similarity=0.006 Sum_probs=58.6
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFA 156 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA 156 (362)
.++++.+...+.=+|+|+|.|.|. ++..++.+ |+ -+++||+.+.. .+.+. +...+++
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~~--------------ml~q~-~~~~~~~ 167 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTVL--------------FLCQF-EAVRKLL 167 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCHH--------------HHHHH-HHHHHHh
Confidence 346665543334489999999986 44455543 32 26899986431 22221 1122222
Q ss_pred HHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEc
Q 035867 157 RLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVE 227 (362)
Q Consensus 157 ~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE 227 (362)
.. .-...+.. .+++++... ..=++|+ |+..|||+. ++.+.+-..-+.|+|.-.+++|
T Consensus 168 ~~-~~~v~~~~----~~ie~lp~~----~~FD~V~--s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 168 DN-DKRAILEP----LGIEQLHEL----YAFDTVF--SMGVLYHRK---SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cc-CCCeEEEE----CCHHHCCCC----CCcCEEE--EcchhhccC---CHHHHHHHHHHhcCCCCEEEEE
Confidence 11 12233322 245554321 1113333 444568873 5656555566778999777654
No 45
>PRK05785 hypothetical protein; Provisional
Probab=60.15 E-value=63 Score=29.87 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=49.9
Q ss_pred eeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q 035867 88 KLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNV 167 (362)
Q Consensus 88 ~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~ 167 (362)
.-.|+|+|.|.|.. ...|+.+.+ .++|||+.+. +.|+... .- .+ +
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S~--------------~Ml~~a~--------~~-~~--~-- 96 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYAE--------------NMLKMNL--------VA-DD--K-- 96 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCCH--------------HHHHHHH--------hc-cc--e--
Confidence 34799999999953 344555431 4799998643 2343321 11 11 1
Q ss_pred eeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEE
Q 035867 168 IHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITV 225 (362)
Q Consensus 168 v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvl 225 (362)
+. .+.+++ ...++..=+|-+.+.|||+. + .+.+|+.+ |-|+|.++++
T Consensus 97 ~~--~d~~~l-----p~~d~sfD~v~~~~~l~~~~---d-~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 97 VV--GSFEAL-----PFRDKSFDVVMSSFALHASD---N-IEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred EE--echhhC-----CCCCCCEEEEEecChhhccC---C-HHHHHHHHHHHhcCceEEE
Confidence 21 344444 23344344455566788874 3 44556544 6778954443
No 46
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=59.88 E-value=1.4e+02 Score=27.17 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=24.9
Q ss_pred HHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 79 IMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 79 IleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
|.+.....+..+|+|+|.|.|. +...++.+ + .++|+++.+
T Consensus 40 l~~~~~~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s 79 (233)
T PRK05134 40 IREHAGGLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS 79 (233)
T ss_pred HHHhccCCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC
Confidence 3333334456689999999875 33344443 2 369999764
No 47
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=57.93 E-value=1.4e+02 Score=28.19 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 74 ACNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 74 taNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
-+.+.+++.+.-...-+|+|+|.|.|.- ...|+.+. ..++|||+.+
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~----a~~la~~~----~~~v~giD~s 84 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGG----CKYINEKY----GAHVHGVDIC 84 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChh----hHHHHhhc----CCEEEEEECC
Confidence 3466777777656667899999999872 23444432 2479999864
No 48
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=57.73 E-value=23 Score=30.10 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=29.5
Q ss_pred hcCCCeeEEEeccCCCCCCcHHHHHHHhcCCC-CCCeeEEEEeccCC
Q 035867 83 FEGESKLHIVDISNTYCTQWPTLLEALATRTD-DTPHLRLTTVVTSK 128 (362)
Q Consensus 83 ~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~-gpP~lrIT~i~~~~ 128 (362)
-...+..+|||+|-|.|. |=+.|+..-. -.|.++|++|+...
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECCc
Confidence 456789999999999985 4455555100 02779999998654
No 49
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=57.52 E-value=64 Score=29.70 Aligned_cols=44 Identities=27% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
..++++..=...-+|||+|.|.|. +..+|+.+. |.+|+|..+.|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp 133 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLP 133 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-H
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccH
Confidence 455666655555689999999994 445555543 78999998864
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=55.03 E-value=67 Score=30.81 Aligned_cols=114 Identities=19% Similarity=0.187 Sum_probs=63.2
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKF 155 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~f 155 (362)
...|+|.+.=+.-=||+|+|.| |=++...+|++.| .++|||..+. ...+. ..+.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~--------------~Q~~~----a~~~ 104 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSE--------------EQAEY----ARER 104 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-H--------------HHHHH----HHHH
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCH--------------HHHHH----HHHH
Confidence 4556777664455599999876 6688899998864 5799998642 12222 3345
Q ss_pred HHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEEc
Q 035867 156 ARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVVE 227 (362)
Q Consensus 156 A~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlvE 227 (362)
++..|++=....+. .+..+++. .-| + |.++-.+-|+. ....+.+++.+ +-|+|.-..++.
T Consensus 105 ~~~~gl~~~v~v~~--~D~~~~~~-----~fD-~--IvSi~~~Ehvg--~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 105 IREAGLEDRVEVRL--QDYRDLPG-----KFD-R--IVSIEMFEHVG--RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp HHCSTSSSTEEEEE--S-GGG--------S-S-E--EEEESEGGGTC--GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred HHhcCCCCceEEEE--eeccccCC-----CCC-E--EEEEechhhcC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 56778763333332 24444322 222 2 22334456774 23467788887 556999888763
No 51
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=54.22 E-value=17 Score=34.84 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.1
Q ss_pred cCCCeeEEEeccCCCCCCcHHHHHHHhc
Q 035867 84 EGESKLHIVDISNTYCTQWPTLLEALAT 111 (362)
Q Consensus 84 ~g~~~VHIIDf~i~~G~QWpsLiq~La~ 111 (362)
.|.+.+||||+|.+.+.+ -.+|++++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999877777 556777776
No 52
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=53.99 E-value=1.5e+02 Score=25.72 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 77 GAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 77 qaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.+.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~ 45 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDP 45 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCH
Confidence 346666653334489999999885 66667766 2 3799998653
No 53
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=53.50 E-value=1.8e+02 Score=28.85 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=64.5
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 035867 75 CNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEK 154 (362)
Q Consensus 75 aNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~ 154 (362)
+...+++.+.....=+|+|+|.|.|. +-..++.+. |..++|+|+.+. ..++.+.+++.
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~--------------~Al~~A~~nl~- 241 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSA--------------AALESSRATLA- 241 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCH--------------HHHHHHHHHHH-
Confidence 34566777764333379999999986 445555552 457899998653 23544444432
Q ss_pred HHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccc-cCcHHHHHHH-HHhcCCcEEEEE
Q 035867 155 FARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAV-DDRRDVLISN-LRSLQPRIITVV 226 (362)
Q Consensus 155 fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~-~~~~~~~L~~-ir~L~P~vvvlv 226 (362)
..++..++... +..+ .+ -.+=+.++.|-.| |..... ....+.+++. .+.|+|.-...+
T Consensus 242 ---~n~l~~~~~~~----D~~~----~~-~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 242 ---ANGLEGEVFAS----NVFS----DI-KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred ---HcCCCCEEEEc----cccc----cc-CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 34566555321 2211 11 1233677777765 543321 1233455554 566899876654
No 54
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=52.43 E-value=99 Score=31.51 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=44.9
Q ss_pred eEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEcccccccCCCCCCchHHHHHHHHHHHHHHHHHhhhccCCCCH
Q 035867 189 ALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVEEEVDLDVGIDGLEFVKGFQECLRWFRVYFESLDESFTKTSN 268 (362)
Q Consensus 189 ~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE~ea~~~~~~n~~~F~~RF~eaL~~Y~alfdslda~~~~~~~ 268 (362)
.++||+.-..+-. ..++.....|...+|+.|+.+|.+ |..+++.+=.++..| ...-++..++.-.
T Consensus 174 ~ilIdT~GWi~G~----~g~elk~~li~~ikP~~Ii~l~~~-------~~~~~l~~~~~~~~~----~~~~~~~~~~sR~ 238 (398)
T COG1341 174 FILIDTDGWIKGW----GGLELKRALIDAIKPDLIIALERA-------NELSPLLEGVESIVY----LKVPDAVAPRSRE 238 (398)
T ss_pred EEEEcCCCceeCc----hHHHHHHHHHhhcCCCEEEEeccc-------cccchhhhcccCceE----EeccccccccChh
Confidence 4567776544432 456777788999999999999865 334444443444433 3333344455556
Q ss_pred HHHHHHHH-Hchhhh
Q 035867 269 ERLMLERA-AGRAIV 282 (362)
Q Consensus 269 eR~~iE~~-~g~eI~ 282 (362)
||...-.. +.+.+.
T Consensus 239 ER~~~R~e~~~ryf~ 253 (398)
T COG1341 239 ERKELREEKYRRYFE 253 (398)
T ss_pred HHHHHHHHHHHHhcc
Confidence 66544322 444443
No 55
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=51.53 E-value=86 Score=29.79 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=35.1
Q ss_pred cCCchhhhH-HHHHHHHH----hhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 64 VSPWTTFGH-VACNGAIM----EAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 64 ~~P~~~fa~-~taNqaIl----eA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
..|--++++ |..|+.|+ +.+.-.+.-+|+|+|.|.|. +...|+.+. + ++|||+.+.
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~avE~d~ 74 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLERA--A---KVTAVEIDR 74 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHhC--C---cEEEEECCH
Confidence 344444444 44444444 44443455689999999984 667777762 2 799998753
No 56
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=51.43 E-value=1.4e+02 Score=30.09 Aligned_cols=122 Identities=14% Similarity=0.006 Sum_probs=61.9
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKF 155 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~f 155 (362)
...+++.+.....=.|+|+|.|.|. +--.++.+. |..++|+|+.+. ..++.+.+++...
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~--------------~Av~~A~~N~~~n 275 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESP--------------MAVASSRLNVETN 275 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCH--------------HHHHHHHHHHHHc
Confidence 3456666653322389999999996 444555552 668999998653 2344444443221
Q ss_pred HHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHH-HHHhcCCcEEEEEc
Q 035867 156 ARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLIS-NLRSLQPRIITVVE 227 (362)
Q Consensus 156 A~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~-~ir~L~P~vvvlvE 227 (362)
.-.-.-.++|..- +-++.+.. ..=+.|+.|-.|...+-.. ++....+++ .-+-|+|.-.+.++
T Consensus 276 ~~~~~~~v~~~~~---D~l~~~~~-----~~fDlIlsNPPfh~~~~~~-~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 276 MPEALDRCEFMIN---NALSGVEP-----FRFNAVLCNPPFHQQHALT-DNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CcccCceEEEEEc---cccccCCC-----CCEEEEEECcCcccCccCC-HHHHHHHHHHHHHhcccCCEEEEE
Confidence 1000013344221 11222211 1225777777774322111 112234444 45678998877765
No 57
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=50.29 E-value=2.6e+02 Score=27.52 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=71.2
Q ss_pred cCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-
Q 035867 84 EGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP- 162 (362)
Q Consensus 84 ~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp- 162 (362)
+..+.|||+|.-.|+|. -++++|..-|..|-++++- +-+. .--+-|+.| +++.|+.
T Consensus 132 ~~g~pvrIlDIAaG~GR---YvlDal~~~~~~~~~i~Lr--Dys~---------------~Nv~~g~~l---i~~~gL~~ 188 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGR---YVLDALEKHPERPDSILLR--DYSP---------------INVEKGRAL---IAERGLED 188 (311)
T ss_pred hcCCceEEEEeccCCcH---HHHHHHHhCCCCCceEEEE--eCCH---------------HHHHHHHHH---HHHcCCcc
Confidence 45689999999999998 7999999988765555444 4321 112556655 4466654
Q ss_pred -EEEEEeeccCCcccCcccccc-ccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEEcccccc
Q 035867 163 -FEFNVIHHVGDLCDLNLAELD-VRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVVEEEVDL 232 (362)
Q Consensus 163 -feF~~v~~~~~~e~l~~~~l~-~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlvE~ea~~ 232 (362)
++|+.- ..++.+++. +.+--.|+|.|- |+-+.++..-...-|+.+ ..+.|.-..+.-.--.|
T Consensus 189 i~~f~~~------dAfd~~~l~~l~p~P~l~iVsG--L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 189 IARFEQG------DAFDRDSLAALDPAPTLAIVSG--LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred ceEEEec------CCCCHhHhhccCCCCCEEEEec--chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 466543 233333333 455556777664 577765333344445555 44788887775333344
No 58
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=49.95 E-value=2e+02 Score=26.25 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=57.3
Q ss_pred eEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEe
Q 035867 89 LHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVI 168 (362)
Q Consensus 89 VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v 168 (362)
-.|+|++.|.|. --+.+|+... -++|+|+.+.. .++.+.+. ++..|+. ....+
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~a-----~~V~~vE~~~~--------------a~~~a~~N----l~~~~~~-~v~~~ 107 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRYA-----AGATLLEMDRA--------------VAQQLIKN----LATLKAG-NARVV 107 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcCC-----CEEEEEECCHH--------------HHHHHHHH----HHHhCCC-cEEEE
Confidence 379999999884 3345565421 37999976432 22222222 3344553 23333
Q ss_pred eccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHh---cCCcEEEEEcccccc
Q 035867 169 HHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRS---LQPRIITVVEEEVDL 232 (362)
Q Consensus 169 ~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~---L~P~vvvlvE~ea~~ 232 (362)
. .++.+.-.. . -.+=+.|++|=.|. ..-.+.++..|.. ++|+-++.+|.....
T Consensus 108 ~--~D~~~~l~~-~-~~~fDlV~~DPPy~-------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 108 N--TNALSFLAQ-P-GTPHNVVFVDPPFR-------KGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred E--chHHHHHhh-c-CCCceEEEECCCCC-------CChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 2 233321110 1 11235777776752 1224556777776 699999999866543
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=48.95 E-value=1.7e+02 Score=26.39 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=23.9
Q ss_pred CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 87 SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 87 ~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
+.-.|+|+|-|.|.-. ..|+.+. |.-++|||+.+.
T Consensus 40 ~~~~VLDiGcGtG~~~----~~la~~~---p~~~v~gVD~s~ 74 (202)
T PRK00121 40 DAPIHLEIGFGKGEFL----VEMAKAN---PDINFIGIEVHE 74 (202)
T ss_pred CCCeEEEEccCCCHHH----HHHHHHC---CCccEEEEEech
Confidence 4567999999999633 3344432 446799998654
No 60
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=48.34 E-value=2.1e+02 Score=26.78 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=51.6
Q ss_pred eEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-EEEEE
Q 035867 89 LHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP-FEFNV 167 (362)
Q Consensus 89 VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp-feF~~ 167 (362)
=+|+|+|.|.|. |.. .++... .|.-+||+|+.+. ..++.+.++ ++..|++ .+|
T Consensus 79 ~~VLDiG~G~G~-~~~---~~a~~~--g~~~~v~gvD~s~--------------~~l~~A~~~----~~~~g~~~v~~-- 132 (272)
T PRK11873 79 ETVLDLGSGGGF-DCF---LAARRV--GPTGKVIGVDMTP--------------EMLAKARAN----ARKAGYTNVEF-- 132 (272)
T ss_pred CEEEEeCCCCCH-HHH---HHHHHh--CCCCEEEEECCCH--------------HHHHHHHHH----HHHcCCCCEEE--
Confidence 389999999874 211 122221 2445899998642 223333322 2345553 333
Q ss_pred eeccCCcccCccccccccCC--CeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEE
Q 035867 168 IHHVGDLCDLNLAELDVRSD--EALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVV 226 (362)
Q Consensus 168 v~~~~~~e~l~~~~l~~~~~--E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlv 226 (362)
+ ..+++++. ..++ +.|+.|+++ |+.. +....+=...+-|+|.-.+++
T Consensus 133 ~--~~d~~~l~-----~~~~~fD~Vi~~~v~--~~~~---d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 133 R--LGEIEALP-----VADNSVDVIISNCVI--NLSP---DKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred E--EcchhhCC-----CCCCceeEEEEcCcc--cCCC---CHHHHHHHHHHHcCCCcEEEE
Confidence 2 13455443 2222 355556654 5553 333444456678899876654
No 61
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=48.21 E-value=1.6e+02 Score=24.42 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=24.6
Q ss_pred CCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 85 GESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 85 g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
..+.-.|+|+|-|.| .+.+.|+.+ |. ++||++.+
T Consensus 20 ~~~~~~vLDiGcG~G----~~~~~l~~~--~~---~~~g~D~~ 53 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG----SFLRALAKR--GF---EVTGVDIS 53 (161)
T ss_dssp TTTTSEEEEESSTTS----HHHHHHHHT--TS---EEEEEESS
T ss_pred cCCCCEEEEEcCCCC----HHHHHHHHh--CC---EEEEEECC
Confidence 456679999999998 355566554 22 89999864
No 62
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=46.56 E-value=2.6e+02 Score=27.91 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=55.1
Q ss_pred EEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-EEEEEe
Q 035867 90 HIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP-FEFNVI 168 (362)
Q Consensus 90 HIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp-feF~~v 168 (362)
+|+|++-|.|. +--.||.+ + -+++||+.+.. .++.+.++ |+..|++ .+|..
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~~~--------------av~~a~~N----~~~~~~~~~~~~~- 287 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIESE--------------AIACAQQS----AQMLGLDNLSFAA- 287 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEECCHH--------------HHHHHHHH----HHHcCCCcEEEEE-
Confidence 68999998883 33445533 2 36999986532 34333332 3455663 44522
Q ss_pred eccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEc
Q 035867 169 HHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVE 227 (362)
Q Consensus 169 ~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE 227 (362)
.++++.... + ...-++|++|=.. ...-..++..|..++|+-+|.++
T Consensus 288 ---~d~~~~~~~-~-~~~~D~vi~DPPr--------~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 288 ---LDSAKFATA-Q-MSAPELVLVNPPR--------RGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred ---CCHHHHHHh-c-CCCCCEEEECCCC--------CCCcHHHHHHHHhcCCCeEEEEE
Confidence 344433211 1 1123677787442 12235678888899998888875
No 63
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=45.57 E-value=2.9e+02 Score=26.83 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHH
Q 035867 72 HVACNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNR 151 (362)
Q Consensus 72 ~~taNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~r 151 (362)
.+..-..|++-+.=+.--||.|+|.| |=+|+.-.|.+-+ +++|||..+.+ .++...+|
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS~~--------------Q~~~~~~r 114 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLSEE--------------QLAYAEKR 114 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCCHH--------------HHHHHHHH
Confidence 33444555555555667799999755 7789999998874 67999986532 23333333
Q ss_pred HHHHHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhc-CCcEEEE
Q 035867 152 MEKFARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSL-QPRIITV 225 (362)
Q Consensus 152 L~~fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L-~P~vvvl 225 (362)
++..|++=..+.+. .++.++... -| .|.++-.++|+.. ..-+.|++.++++ +|.-..+
T Consensus 115 ----~~~~gl~~~v~v~l--~d~rd~~e~-----fD---rIvSvgmfEhvg~--~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 115 ----IAARGLEDNVEVRL--QDYRDFEEP-----FD---RIVSVGMFEHVGK--ENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ----HHHcCCCcccEEEe--ccccccccc-----cc---eeeehhhHHHhCc--ccHHHHHHHHHhhcCCCceEE
Confidence 44567662233332 245554332 12 2335556678852 3467788888664 7776665
No 64
>PRK06922 hypothetical protein; Provisional
Probab=45.10 E-value=1.5e+02 Score=32.28 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=57.1
Q ss_pred eEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEe
Q 035867 89 LHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVI 168 (362)
Q Consensus 89 VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v 168 (362)
-.|+|+|.|.|. +...|+.+. |..++|||+.+. ..++.+.+++ ...|.++++ +
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~--------------~MLe~Ararl----~~~g~~ie~--I 472 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISE--------------NVIDTLKKKK----QNEGRSWNV--I 472 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCH--------------HHHHHHHHHh----hhcCCCeEE--E
Confidence 479999999984 455666652 567999998653 2344443332 233555444 3
Q ss_pred eccCCcccCccccccccCCCeEEEeccccccccccc---------cCcHHHHHHH-HHhcCCcEEEEE
Q 035867 169 HHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAV---------DDRRDVLISN-LRSLQPRIITVV 226 (362)
Q Consensus 169 ~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~---------~~~~~~~L~~-ir~L~P~vvvlv 226 (362)
. .+..++. . ...++.+=+|-+.+.+|++... ......+|+. .+.|+|.-.+++
T Consensus 473 ~--gDa~dLp-~--~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 473 K--GDAINLS-S--SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred E--cchHhCc-c--ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 2333321 0 0233433334455556876420 1123455554 578999866654
No 65
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=44.63 E-value=2.3e+02 Score=25.19 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=51.2
Q ss_pred eEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-EEEEE
Q 035867 89 LHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP-FEFNV 167 (362)
Q Consensus 89 VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp-feF~~ 167 (362)
-+|+|+|-|.|. .++. ||.. .|..++|||+.+.. .++.+. +.++..|++ ++|
T Consensus 44 ~~vLDiGcGtG~--~s~~--la~~---~~~~~V~~iD~s~~--------------~~~~a~----~~~~~~~~~~i~~-- 96 (181)
T TIGR00138 44 KKVIDIGSGAGF--PGIP--LAIA---RPELKLTLLESNHK--------------KVAFLR----EVKAELGLNNVEI-- 96 (181)
T ss_pred CeEEEecCCCCc--cHHH--HHHH---CCCCeEEEEeCcHH--------------HHHHHH----HHHHHhCCCCeEE--
Confidence 489999999984 2221 2222 13467999986531 222222 334556764 444
Q ss_pred eeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEEc
Q 035867 168 IHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVVE 227 (362)
Q Consensus 168 v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlvE 227 (362)
+. .+++++.. -.+=+.++.|+ +|++ +.+++.+ +-|+|.-.++++
T Consensus 97 i~--~d~~~~~~----~~~fD~I~s~~---~~~~-------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 97 VN--GRAEDFQH----EEQFDVITSRA---LASL-------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred Ee--cchhhccc----cCCccEEEehh---hhCH-------HHHHHHHHHhcCCCCEEEEE
Confidence 42 35555421 11224555554 3433 3355554 447999888875
No 66
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=44.63 E-value=2.5e+02 Score=27.21 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=56.5
Q ss_pred eeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q 035867 88 KLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP-FEFN 166 (362)
Q Consensus 88 ~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp-feF~ 166 (362)
.-+|+|++-|.|. +--.||.+ + -+++||+.+. ..++.+.+ -|+..|++ .+|.
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~--------------~av~~A~~----n~~~~~l~~v~~~ 226 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISA--------------EAIACAKQ----SAAELGLTNVQFQ 226 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCH--------------HHHHHHHH----HHHHcCCCceEEE
Confidence 3589999999985 44455653 2 2699998653 23433332 34556664 5563
Q ss_pred EeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEc
Q 035867 167 VIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVE 227 (362)
Q Consensus 167 ~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE 227 (362)
. .+++++... . ...-+.|++|=. ...--+.++..+.+++|+-++.+.
T Consensus 227 ~----~D~~~~~~~-~-~~~~D~Vv~dPP--------r~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 227 A----LDSTQFATA-Q-GEVPDLVLVNPP--------RRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred E----cCHHHHHHh-c-CCCCeEEEECCC--------CCCccHHHHHHHHHcCCCeEEEEE
Confidence 3 344443211 1 112357777732 111234577888999999888763
No 67
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=43.11 E-value=2.7e+02 Score=25.61 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 75 CNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 75 aNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
.-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ + -++|+++.+
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 44556666665445579999999983 55666654 2 478999864
No 68
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=42.52 E-value=1.9e+02 Score=26.00 Aligned_cols=100 Identities=24% Similarity=0.302 Sum_probs=52.5
Q ss_pred EEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEee
Q 035867 90 HIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIH 169 (362)
Q Consensus 90 HIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~ 169 (362)
+|+|+|.|.|. +...++.+. |..++||++.+. ..++...+++ +..|+.-....+.
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~--------------~~~~~a~~~~----~~~gl~~~i~~~~ 56 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISP--------------EQAEVGRERI----RALGLQGRIRIFY 56 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCH--------------HHHHHHHHHH----HhcCCCcceEEEe
Confidence 68999998885 344555543 346899998642 2233333332 3445543333332
Q ss_pred ccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEE
Q 035867 170 HVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVV 226 (362)
Q Consensus 170 ~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlv 226 (362)
.+....... ..=+. |.+...+||+. + .+.+|+.+ +.|+|.-.+++
T Consensus 57 --~d~~~~~~~----~~fD~--I~~~~~l~~~~---~-~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 57 --RDSAKDPFP----DTYDL--VFGFEVIHHIK---D-KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred --cccccCCCC----CCCCE--eehHHHHHhCC---C-HHHHHHHHHHHcCCCCEEEE
Confidence 233221111 11122 23444567773 2 45677666 55799977764
No 69
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=42.09 E-value=2.6e+02 Score=25.12 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=54.1
Q ss_pred eeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q 035867 88 KLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP-FEFN 166 (362)
Q Consensus 88 ~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp-feF~ 166 (362)
.-.|+|+|-|.|. .++ .++.+. |..++|+|+.+. +.++.+. +.++..|++ ++|
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~~---~~~~V~giD~s~--------------~~l~~A~----~~~~~~~l~~i~~- 99 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIAR---PELKVTLVDSLG--------------KKIAFLR----EVAAELGLKNVTV- 99 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHHC---CCCeEEEEeCcH--------------HHHHHHH----HHHHHcCCCCEEE-
Confidence 3469999999884 232 223221 346899998643 2233332 344556764 444
Q ss_pred EeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHH-HHhcCCcEEEEEc
Q 035867 167 VIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISN-LRSLQPRIITVVE 227 (362)
Q Consensus 167 ~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~-ir~L~P~vvvlvE 227 (362)
+. .+.+++.. -.+-+.++.|+. ...+.+++. .+.|+|.-.+++.
T Consensus 100 -~~--~d~~~~~~----~~~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 100 -VH--GRAEEFGQ----EEKFDVVTSRAV----------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred -Ee--ccHhhCCC----CCCccEEEEccc----------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 32 34554422 123456666541 134556665 5788999888764
No 70
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=41.89 E-value=2.6e+02 Score=25.06 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 86 ESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 86 ~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
...-.|+|+|.|.|. +...|+.+ + .++||++.+
T Consensus 62 ~~~~~vLDvGcG~G~----~~~~l~~~--~---~~v~~~D~s 94 (230)
T PRK07580 62 LTGLRILDAGCGVGS----LSIPLARR--G---AKVVASDIS 94 (230)
T ss_pred CCCCEEEEEeCCCCH----HHHHHHHc--C---CEEEEEECC
Confidence 345689999999885 34455543 2 249999864
No 71
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=39.76 E-value=2.8e+02 Score=26.15 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=71.6
Q ss_pred cCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcE
Q 035867 84 EGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPF 163 (362)
Q Consensus 84 ~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpf 163 (362)
....++-+...|+|.|.--+- +- -.|--+||.|++.. .+++...+ .+|+. .|.
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkf----y~----~~p~~svt~lDpn~---------------~mee~~~k--s~~E~--k~~ 125 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKF----YP----WKPINSVTCLDPNE---------------KMEEIADK--SAAEK--KPL 125 (252)
T ss_pred cccCccceEEecccCCCCccc----cc----CCCCceEEEeCCcH---------------HHHHHHHH--HHhhc--cCc
Confidence 345689999999998853221 11 12678999998542 24444332 45554 555
Q ss_pred EEE-EeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHHHh-cCCcEEEE-EcccccccCCCCCCc
Q 035867 164 EFN-VIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNLRS-LQPRIITV-VEEEVDLDVGIDGLE 240 (362)
Q Consensus 164 eF~-~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~-L~P~vvvl-vE~ea~~~~~~n~~~ 240 (362)
+|. -| +.+.|++. ++.++-.=+|-|.|-|-.. .++++ .|+.+|+ |+|.-.++ .|.-+.- -.
T Consensus 126 ~~~~fv--va~ge~l~----~l~d~s~DtVV~TlvLCSv---e~~~k-~L~e~~rlLRpgG~iifiEHva~~------y~ 189 (252)
T KOG4300|consen 126 QVERFV--VADGENLP----QLADGSYDTVVCTLVLCSV---EDPVK-QLNEVRRLLRPGGRIIFIEHVAGE------YG 189 (252)
T ss_pred ceEEEE--eechhcCc----ccccCCeeeEEEEEEEecc---CCHHH-HHHHHHHhcCCCcEEEEEeccccc------ch
Confidence 555 23 24667652 2345544456677666544 35655 4666655 59987775 6755433 46
Q ss_pred hHHHHHHH
Q 035867 241 FVKGFQEC 248 (362)
Q Consensus 241 F~~RF~ea 248 (362)
|..|+.++
T Consensus 190 ~~n~i~q~ 197 (252)
T KOG4300|consen 190 FWNRILQQ 197 (252)
T ss_pred HHHHHHHH
Confidence 78777654
No 72
>PRK04148 hypothetical protein; Provisional
Probab=38.86 E-value=1.8e+02 Score=24.98 Aligned_cols=79 Identities=11% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCC----------------CCCCC------
Q 035867 79 IMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVG----------------GSGAG------ 136 (362)
Q Consensus 79 IleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~----------------~~~~~------ 136 (362)
|.+.....+.-.|+|.|+|.|. ++-+.|++. | ..+|+|+.+...- .|..+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~---~vA~~L~~~-G----~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYF---KVAKKLKES-G----FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHhcccccCCEEEEEEecCCH---HHHHHHHHC-C----CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCC
Confidence 5555555555679999999886 566667643 2 3677777543200 00000
Q ss_pred ---CchhHHHHHHHHHHHHHHHHHHcCCcEEEEEee
Q 035867 137 ---GLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIH 169 (362)
Q Consensus 137 ---~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~ 169 (362)
+..+ =.|+-.-+.+.|+..|.++-+.++.
T Consensus 80 liysirp----p~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 80 LIYSIRP----PRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EEEEeCC----CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0011 1356677888899999998888874
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=38.10 E-value=2.7e+02 Score=24.73 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=24.3
Q ss_pred CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 87 SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 87 ~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
+.--|+|+|.|.|. ++-.+|.+. |...++||+.+
T Consensus 16 ~~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~~ 49 (194)
T TIGR00091 16 KAPLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEIH 49 (194)
T ss_pred CCceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEee
Confidence 33479999999985 555666553 55689999864
No 74
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=34.76 E-value=42 Score=32.09 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=18.9
Q ss_pred cCCCeeEEEeccCCCCCCcHHHHHHHhcCC
Q 035867 84 EGESKLHIVDISNTYCTQWPTLLEALATRT 113 (362)
Q Consensus 84 ~g~~~VHIIDf~i~~G~QWpsLiq~La~R~ 113 (362)
.|.+.+||||+ +.+ |. .+|+.+++..
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 58999999999 444 55 5666666543
No 75
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=34.51 E-value=3.1e+02 Score=23.81 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=21.1
Q ss_pred EEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 90 HIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 90 HIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
.|+|+|.|.|. +...++.+ ++ ++++++.+
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s 50 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDIN 50 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECC
Confidence 49999999984 55556654 32 89999864
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=33.37 E-value=1.3e+02 Score=23.68 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=22.1
Q ss_pred EEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 90 HIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 90 HIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
+|+|+|.|.|. +...++.+. |..++|+++.+
T Consensus 22 ~vldlG~G~G~----~~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 22 VLWDIGAGSGS----ITIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred EEEEeCCCCCH----HHHHHHHHC---CCceEEEEcCC
Confidence 89999999885 344455542 33789999864
No 77
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=32.97 E-value=2.1e+02 Score=27.72 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=26.8
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 78 AIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 78 aIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
.|++++.-...=.|+|+|-|.|. |-..|+.+. -++++|+.+.
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD~ 68 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEIDP 68 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECCH
Confidence 45555543344479999999886 445555542 2589998653
No 78
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=32.66 E-value=1.2e+02 Score=24.51 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=24.6
Q ss_pred CCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEE
Q 035867 186 SDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIIT 224 (362)
Q Consensus 186 ~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvv 224 (362)
.+..-+.+..+..| +...++...|+.++|+-|+
T Consensus 71 ~~~~~~~~VPYSeH------SSf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 71 RGNVRIYRVPYSEH------SSFSELKEFVSFLKPKKII 103 (110)
T ss_pred CCCceEEEEecccC------CCHHHHHHHHHhcCCcEEE
Confidence 34455555666666 5678899999999999887
No 79
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=32.51 E-value=27 Score=26.32 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.2
Q ss_pred cchhhHHHHHhhCCCccCcC
Q 035867 297 ETATRWSGRLHGAGFSPFMF 316 (362)
Q Consensus 297 e~~~~W~~r~~~aGF~~v~l 316 (362)
|+..+=|.+|..+|++|+.+
T Consensus 3 ~RV~khR~~lRa~GLRPVqi 22 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQI 22 (65)
T ss_pred HHHHHHHHHHHHcCCCccee
Confidence 34557789999999999984
No 80
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=31.95 E-value=1.8e+02 Score=26.38 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=79.6
Q ss_pred cCCchhhhHHHHHHHHHhhhc----------C-------------CCeeEEEeccCC---CCCCcHHHHHHHhcCCCCCC
Q 035867 64 VSPWTTFGHVACNGAIMEAFE----------G-------------ESKLHIVDISNT---YCTQWPTLLEALATRTDDTP 117 (362)
Q Consensus 64 ~~P~~~fa~~taNqaIleA~~----------g-------------~~~VHIIDf~i~---~G~QWpsLiq~La~R~~gpP 117 (362)
.+|.+.|||...-...+-++. | ..+|+||.|=-+ -+..=..+|.+|+.+.
T Consensus 13 ~~~~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~---- 88 (184)
T TIGR01626 13 IFPSSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAK---- 88 (184)
T ss_pred HhHHHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcC----
Confidence 567777777655554443331 1 148999998644 3466678999996542
Q ss_pred eeEE------EEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEeeccCCcccCccccccccC-CCe-
Q 035867 118 HLRL------TTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIHHVGDLCDLNLAELDVRS-DEA- 189 (362)
Q Consensus 118 ~lrI------T~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~-~E~- 189 (362)
+.+ |+|+.+. ....++.-+.+|+++.+..|-|.++. . +-+......+++.. .++
T Consensus 89 -~~~~~y~~t~~IN~dd---------------~~~~~~~fVk~fie~~~~~~P~~~vl-l-D~~g~v~~~~gv~~~P~T~ 150 (184)
T TIGR01626 89 -FPPVKYQTTTIINADD---------------AIVGTGMFVKSSAKKGKKENPWSQVV-L-DDKGAVKNAWQLNSEDSAI 150 (184)
T ss_pred -CCcccccceEEEECcc---------------chhhHHHHHHHHHHHhcccCCcceEE-E-CCcchHHHhcCCCCCCceE
Confidence 556 8887443 23467778889999998887766553 1 22332233455543 366
Q ss_pred EEEeccccccccccc---cCcHHHHHHHHHhc
Q 035867 190 LAINCIGALHTIAAV---DDRRDVLISNLRSL 218 (362)
Q Consensus 190 laVN~~~~Lh~l~~~---~~~~~~~L~~ir~L 218 (362)
.+||-.-.+...... ....+.++..|+++
T Consensus 151 fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 151 IVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred EEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 688887665544322 12334566666654
No 81
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=31.91 E-value=27 Score=35.09 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.8
Q ss_pred CCCeeEEEeccCC
Q 035867 85 GESKLHIVDISNT 97 (362)
Q Consensus 85 g~~~VHIIDf~i~ 97 (362)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 4568999999985
No 82
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=30.78 E-value=1.1e+02 Score=29.41 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=35.0
Q ss_pred CCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEe
Q 035867 115 DTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVI 168 (362)
Q Consensus 115 gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v 168 (362)
|+|..|||...++.. .+...|+++.+.+.+-++.+|...+|+--
T Consensus 219 gaPrYri~v~a~dyk----------kaee~l~~a~~~~~~~ikk~gg~~~~~r~ 262 (269)
T COG1093 219 GAPRYRIDVQAPDYK----------KAEEVLEKAAEAAIKTIKKLGGEGTFIRE 262 (269)
T ss_pred cCCeEEEEEecCCHH----------HHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 678888887765432 34567999999999999999999999754
No 83
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=29.56 E-value=4.3e+02 Score=25.34 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 76 NGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 76 NqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
-+.|+++.+..+.-+||..|-|.| .|=+.|+++.. ++|+|.-+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~G----aLT~~Ll~~~~-----~v~aiEiD~ 62 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLG----ALTEPLLERAA-----RVTAIEIDR 62 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCC----HHHHHHHhhcC-----eEEEEEeCH
Confidence 467889998888899999999988 58888888753 489998654
No 84
>smart00126 IL6 Interleukin-6 homologues. Family includes granulocyte colony-stimulating factor (G-CSF) and myelomonocytic growth factor (MGF). IL-6 is also known as B-cell stimulatory factor 2.
Probab=28.44 E-value=1.9e+02 Score=25.51 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=48.1
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHH---HHchhhhhhhhcCCCCCc----------ccccch
Q 035867 233 DVGIDGLEFVKGFQECLRWFRVYFESLDESFTKTSNERLMLER---AAGRAIVDLVACQPSEST----------ERRETA 299 (362)
Q Consensus 233 ~~~~n~~~F~~RF~eaL~~Y~alfdslda~~~~~~~eR~~iE~---~~g~eI~niVa~eg~~R~----------eR~e~~ 299 (362)
..|.|...-+.|...-|.-|..+|+.|...++.+.+--..+.. .+...|.+=|-.-|..-. +..++-
T Consensus 47 ~~gfn~e~CL~ri~~GL~~yq~~L~~l~~~f~~~~~~v~~l~~~~~~L~~~l~~k~k~~~~v~~p~p~~~~~ll~~l~s~ 126 (154)
T smart00126 47 QSGFNQEICLVKITAGLLEYQVYLEYLQNEFPENKENVDTLQLDTKTLIQIIQQEMKDLGKITYPTPTANRGLLPKLQSQ 126 (154)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHhhCcCccccCCCccchhhhhhccCc
Confidence 3456778889999999999999999999998854321111222 244444443332232222 445566
Q ss_pred hhHHHHHhh
Q 035867 300 TRWSGRLHG 308 (362)
Q Consensus 300 ~~W~~r~~~ 308 (362)
.+|.++|..
T Consensus 127 ~~W~r~~t~ 135 (154)
T smart00126 127 NQWVRNATG 135 (154)
T ss_pred cHHHHHHHH
Confidence 789888865
No 85
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=28.25 E-value=1.8e+02 Score=27.47 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=53.2
Q ss_pred HHHHHhhhc-cCCCCHHHHHHHHHHchhhhhhhhcCCCCCccc-ccchhhHHHHHhhCCCccCcCChHHHHHHHHHHHh
Q 035867 254 VYFESLDES-FTKTSNERLMLERAAGRAIVDLVACQPSESTER-RETATRWSGRLHGAGFSPFMFSDEVCDDVRALLRR 330 (362)
Q Consensus 254 alfdslda~-~~~~~~eR~~iE~~~g~eI~niVa~eg~~R~eR-~e~~~~W~~r~~~aGF~~v~ls~~~~~qa~~ll~~ 330 (362)
..-+-|... ++-..++|..+-..--++|.|+|+....+...+ |-+-.+=...|..|||..-|+.+ +.+|+...++.
T Consensus 75 I~~eIl~kGeiQlTaeqR~~m~e~k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evlK~ 152 (234)
T COG1500 75 IAEEILKKGEIQLTAEQRREMLEEKKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVLKA 152 (234)
T ss_pred HHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHHHH
Confidence 333444432 233445565443335789999999988776555 66677888999999999999876 67888887764
No 86
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=27.28 E-value=1.9e+02 Score=26.91 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=43.0
Q ss_pred eeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q 035867 88 KLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVP-FEFN 166 (362)
Q Consensus 88 ~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvp-feF~ 166 (362)
..|++|.|-|-|+ |.+.=+++. |.+++|-|++.... .. -|...++.+|++ .++.
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~Kk-----------~~-------FL~~~~~eL~L~nv~i~ 122 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGKK-----------IA-------FLREVKKELGLENVEIV 122 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCchH-----------HH-------HHHHHHHHhCCCCeEEe
Confidence 5799999998887 888878754 66889999865321 12 344456677888 7763
Q ss_pred EeeccCCcccCcc
Q 035867 167 VIHHVGDLCDLNL 179 (362)
Q Consensus 167 ~v~~~~~~e~l~~ 179 (362)
. .+.|++..
T Consensus 123 ~----~RaE~~~~ 131 (215)
T COG0357 123 H----GRAEEFGQ 131 (215)
T ss_pred h----hhHhhccc
Confidence 3 46777644
No 87
>PTZ00063 histone deacetylase; Provisional
Probab=27.17 E-value=49 Score=34.15 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=35.4
Q ss_pred CeEEEecccccccccc------ccCcHHHHHHHHHhcCCcEEEEEcccccccCCCCCCchHHHHHHHHHHHHHHH
Q 035867 188 EALAINCIGALHTIAA------VDDRRDVLISNLRSLQPRIITVVEEEVDLDVGIDGLEFVKGFQECLRWFRVYF 256 (362)
Q Consensus 188 E~laVN~~~~Lh~l~~------~~~~~~~~L~~ir~L~P~vvvlvE~ea~~~~~~n~~~F~~RF~eaL~~Y~alf 256 (362)
|+|+|+|-+=-|.--. .......+++.+++++..++++.| +|++ +.-...|+.|..++.
T Consensus 252 d~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~g------GGY~----~~~lar~w~~~t~~~ 316 (436)
T PTZ00063 252 GAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGG------GGYT----IRNVARCWAYETGVI 316 (436)
T ss_pred CEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeC------ccCC----chHHHHHHHHHHHHH
Confidence 5888888764442100 011234567888999888888865 2332 244666777777766
No 88
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=27.04 E-value=2.1e+02 Score=30.97 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=54.4
Q ss_pred cCCCC-CCcHHHHHHHhcCC---CCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEeec
Q 035867 95 SNTYC-TQWPTLLEALATRT---DDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIHH 170 (362)
Q Consensus 95 ~i~~G-~QWpsLiq~La~R~---~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~~ 170 (362)
|+..| -||-+|.++|..+- ++.|.+.|+....... + .|-+=|.++|+..|++-+|..
T Consensus 354 g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~eE-------------D---~T~~YL~d~a~qAG~~t~~~~--- 414 (619)
T PRK10507 354 YKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE-------------N---YHAQFMQQALHQAGFETKILR--- 414 (619)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCCCc-------------H---HHHHHHHHHHHHCCCceEEec---
Confidence 34455 78888887776542 2346788886643321 1 155668999999999988852
Q ss_pred cCCcccCccc-cccccCCCeEEEeccccccc
Q 035867 171 VGDLCDLNLA-ELDVRSDEALAINCIGALHT 200 (362)
Q Consensus 171 ~~~~e~l~~~-~l~~~~~E~laVN~~~~Lh~ 200 (362)
.++++... .=.+.++|-..|+++|.|+.
T Consensus 415 --~iedL~~d~~G~~~D~dg~~I~~vfKlyP 443 (619)
T PRK10507 415 --GLDELRWDAAGQLIDGDGRLVNCVWKTWA 443 (619)
T ss_pred --CHHHeEECCCCcEECCCCCEeeeeeeccc
Confidence 23444333 11255666778999998774
No 89
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=26.96 E-value=3.8e+02 Score=24.59 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=47.6
Q ss_pred hhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEE-eccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcC
Q 035867 82 AFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTT-VVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMG 160 (362)
Q Consensus 82 A~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~-i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~g 160 (362)
.+.+.+.|-+||=.|+.|.--..+|++|-..-. ..++-+.. +++.+. +-..+..+.++.+|
T Consensus 117 ~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~~-----------------~~~~~~~~~~~~lg 178 (191)
T PF15609_consen 117 LLRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRSE-----------------EDRARFEALAEELG 178 (191)
T ss_pred HhcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCCH-----------------HHHHHHHHHHHHcC
Confidence 344577999999999999988899999977632 22333322 233221 23346667888999
Q ss_pred CcEEEEEee
Q 035867 161 VPFEFNVIH 169 (362)
Q Consensus 161 vpfeF~~v~ 169 (362)
+|.+|-.+.
T Consensus 179 i~i~~vsL~ 187 (191)
T PF15609_consen 179 IPIDVVSLL 187 (191)
T ss_pred CcEEEEEee
Confidence 999987653
No 90
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=26.94 E-value=88 Score=30.59 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=32.6
Q ss_pred HHHHhhhcCC---CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 77 GAIMEAFEGE---SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 77 qaIleA~~g~---~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
.+++|++... +.-||.|.|.|.|.-=-+++..| |.-|+|+|+.+.
T Consensus 135 ~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~~~~v~AiD~S~ 182 (328)
T KOG2904|consen 135 EAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------PQCTVTAIDVSK 182 (328)
T ss_pred HHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------CCceEEEEeccH
Confidence 4566776543 34589999999998666666666 357899998754
No 91
>PRK14968 putative methyltransferase; Provisional
Probab=26.69 E-value=4.1e+02 Score=22.73 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=23.0
Q ss_pred CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 87 SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 87 ~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
+.-.|+|+|.|.|. +...|+.+ + .++|+++.+
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s 54 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDIN 54 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEECC
Confidence 33469999999997 55566665 2 479999864
No 92
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=25.35 E-value=4.1e+02 Score=24.84 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 78 AIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 78 aIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
.|++++.-.+.=+|+|+|-|.|. |...|+.+. -++|+|+.+.
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid~ 61 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELDP 61 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECCH
Confidence 44444443344579999999985 666676662 2699998653
No 93
>PRK05723 flavodoxin; Provisional
Probab=25.24 E-value=4.5e+02 Score=22.71 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=58.4
Q ss_pred EEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEecccccc
Q 035867 120 RLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALH 199 (362)
Q Consensus 120 rIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh 199 (362)
||+.+.-+++++ -+++.++|.+.++..|+...-... ..+.++ .. ..++..|+|.+.+.-=
T Consensus 2 ~i~I~ygS~tG~-------------ae~~A~~la~~l~~~g~~~~~~~~---~~~~~~--~~--~~~~~li~~~sT~G~G 61 (151)
T PRK05723 2 KVAILSGSVYGT-------------AEEVARHAESLLKAAGFEAWHNPR---ASLQDL--QA--FAPEALLAVTSTTGMG 61 (151)
T ss_pred eEEEEEEcCchH-------------HHHHHHHHHHHHHHCCCceeecCc---CCHhHH--Hh--CCCCeEEEEECCCCCC
Confidence 566665555532 346778888888877776432111 012222 11 2233344444444222
Q ss_pred ccccccCcHHHHHHHHHhcCC-----cEEEEEcccccccCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 035867 200 TIAAVDDRRDVLISNLRSLQP-----RIITVVEEEVDLDVGIDGLEFVKGFQECLRWFRVYFESLDES 262 (362)
Q Consensus 200 ~l~~~~~~~~~~L~~ir~L~P-----~vvvlvE~ea~~~~~~n~~~F~~RF~eaL~~Y~alfdslda~ 262 (362)
.+ ++.-..|.+.+++..| +-+.+. ..| ++ .+.+.|..+.......|..+.+.
T Consensus 62 e~---Pd~~~~f~~~L~~~~~~~l~~~~~aVf------GLG-Ds-~Y~~~Fc~a~~~ld~~L~~lGA~ 118 (151)
T PRK05723 62 EL---PDNLMPLYSAIRDQLPAAWRGLPGAVI------ALG-DS-SYGDTFCGGGEQMRELFAELGVR 118 (151)
T ss_pred CC---chhHHHHHHHHHhcCccCCCCCEEEEE------eEe-CC-cchHHHhHHHHHHHHHHHHCCCc
Confidence 22 3445667777775444 222221 111 23 56677888887777777777664
No 94
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.85 E-value=67 Score=31.99 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.9
Q ss_pred CCCeeEEEeccCCCC--CCcH
Q 035867 85 GESKLHIVDISNTYC--TQWP 103 (362)
Q Consensus 85 g~~~VHIIDf~i~~G--~QWp 103 (362)
|.+||=|||||+.|| .|+.
T Consensus 152 ~~~RVaIiD~DvHHGnGTqei 172 (340)
T COG0123 152 GVKRVAIIDFDVHHGNGTQEI 172 (340)
T ss_pred CCCcEEEEEecCCCChhhHHH
Confidence 789999999999876 6654
No 95
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=24.73 E-value=5e+02 Score=23.09 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=50.9
Q ss_pred CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC-cEEE
Q 035867 87 SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGV-PFEF 165 (362)
Q Consensus 87 ~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gv-pfeF 165 (362)
+...|+|+|.|.|. +...++.. + .++|+++.+. ..++...+++ ...++ ++.|
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~--------------~~~~~a~~~~----~~~~~~~~~~ 97 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASE--------------ENIEVAKLHA----KKDPLLKIEY 97 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCH--------------HHHHHHHHHH----HHcCCCceEE
Confidence 36689999999884 33345443 2 2388887542 2344433333 23444 3444
Q ss_pred EEeeccCCcccCccccccccCCCeEEEeccccccccccccCcHHHHHHHH-HhcCCcEEEEE
Q 035867 166 NVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAVDDRRDVLISNL-RSLQPRIITVV 226 (362)
Q Consensus 166 ~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~i-r~L~P~vvvlv 226 (362)
... +.+++.... -.+-+.++. ...+|+.. + ...+|+.+ +.|+|.-++++
T Consensus 98 ~~~----d~~~~~~~~--~~~~D~i~~--~~~l~~~~---~-~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 98 RCT----SVEDLAEKG--AKSFDVVTC--MEVLEHVP---D-PQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred EeC----CHHHhhcCC--CCCccEEEe--hhHHHhCC---C-HHHHHHHHHHhcCCCcEEEE
Confidence 322 333332111 112234443 33456663 3 34566554 66788876664
No 96
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=24.57 E-value=5.5e+02 Score=23.53 Aligned_cols=32 Identities=13% Similarity=-0.098 Sum_probs=22.5
Q ss_pred eeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 88 KLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 88 ~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
.-.|+|.|-|.|. =+..||.+ | ..+|||+.+.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-G----~~V~avD~s~ 69 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-G----HEVLGVELSE 69 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-C----CeEEEEccCH
Confidence 3478999998884 34556764 2 5699998653
No 97
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=24.21 E-value=7.7e+02 Score=25.09 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=57.6
Q ss_pred hhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcC
Q 035867 81 EAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMG 160 (362)
Q Consensus 81 eA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~g 160 (362)
+.+...+.-+|+|+|.|.|. +--.||.+. -+++||+.+. ..++.+.++ |+..|
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~--------------~al~~A~~n----~~~~~ 343 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVE--------------AMVERAREN----ARRNG 343 (443)
T ss_pred HHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCH--------------HHHHHHHHH----HHHcC
Confidence 33333344689999999995 333466542 3799998653 234444333 33445
Q ss_pred Cc-EEEEEeeccCCcccCccccccc--cCCCeEEEeccccccccccccCcHHHHHHHHHhcCCcEEEEEc
Q 035867 161 VP-FEFNVIHHVGDLCDLNLAELDV--RSDEALAINCIGALHTIAAVDDRRDVLISNLRSLQPRIITVVE 227 (362)
Q Consensus 161 vp-feF~~v~~~~~~e~l~~~~l~~--~~~E~laVN~~~~Lh~l~~~~~~~~~~L~~ir~L~P~vvvlvE 227 (362)
+. .+|.. .++++.. ..+.. ..-+.|++|=.. ...+.+++.+.+++|+-++.+.
T Consensus 344 ~~~v~~~~----~d~~~~l-~~~~~~~~~fD~Vi~dPPr---------~g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 344 LDNVTFYH----ANLEEDF-TDQPWALGGFDKVLLDPPR---------AGAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred CCceEEEE----eChHHhh-hhhhhhcCCCCEEEECcCC---------cChHHHHHHHHhcCCCeEEEEE
Confidence 53 44432 2343221 11111 112456555442 1234567888999999998873
No 98
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=24.02 E-value=2e+02 Score=29.11 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=36.4
Q ss_pred eeEE-EeccCC-CCCCc-----HHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 035867 88 KLHI-VDISNT-YCTQW-----PTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARL 158 (362)
Q Consensus 88 ~VHI-IDf~i~-~G~QW-----psLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~ 158 (362)
+||| ||-|++ .|++. ..|++.++. ..|.|++.||-+-..... ...+.+.....+++..+.+.++++.
T Consensus 133 ~V~lkvDtGm~R~Gv~~~~~~~~~l~~~i~~---~~~~L~l~Gi~tH~g~~~-~~~~~~e~~~~~~~~~~~~~~~~~~ 206 (389)
T cd06817 133 SVFIKVDCGTHRAGVPPESEDAKELIQKLEK---ASEAVELFGFYSHAGHSY-SSRSAEDAKEVLREEIEAVLTAAKK 206 (389)
T ss_pred EEEEEEcCCCCcCCCCCChHHHHHHHHHHHh---hCCCcEEEEEEEeCCccc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6888 888877 67764 346666643 146799999965322111 1112223333344444555555554
No 99
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=23.77 E-value=2.5e+02 Score=28.15 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=40.8
Q ss_pred eeEE-EeccCC-CCCCc----HHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHHc
Q 035867 88 KLHI-VDISNT-YCTQW----PTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGL--AAVQKVMKEIGNRMEKFARLM 159 (362)
Q Consensus 88 ~VHI-IDf~i~-~G~QW----psLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~--~~~~~~l~etg~rL~~fA~~~ 159 (362)
.||| ||=|++ .|+.. ..|++.+.. .|.|++.||-.-.-+.....+.. ....+.+.+.-+.+.+.++.+
T Consensus 135 ~V~lkVDtGm~R~Gv~~~~~~~~l~~~i~~----~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (379)
T cd06814 135 RINLELDVGLHRGGFADPQTLPKALTAIDA----PPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAH 210 (379)
T ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHHh----CCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 7887 676665 46654 456666554 35699999964321110001110 122333445556777777776
Q ss_pred ---CCcEEEEE
Q 035867 160 ---GVPFEFNV 167 (362)
Q Consensus 160 ---gvpfeF~~ 167 (362)
|++-++-.
T Consensus 211 ~~~g~~~~~vs 221 (379)
T cd06814 211 LGAHTQKLTLN 221 (379)
T ss_pred hccCCCccEEe
Confidence 77655533
No 100
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.58 E-value=1.2e+02 Score=28.42 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=23.3
Q ss_pred hhcCCCeeEEEeccCCC-C-CCcHHHHHHHhcCC
Q 035867 82 AFEGESKLHIVDISNTY-C-TQWPTLLEALATRT 113 (362)
Q Consensus 82 A~~g~~~VHIIDf~i~~-G-~QWpsLiq~La~R~ 113 (362)
...|.+.+||+|++... | ..=..+|+.++...
T Consensus 42 ~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~ 75 (234)
T PRK13587 42 QFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT 75 (234)
T ss_pred hccCCCEEEEEECcccccCCcchHHHHHHHHhhc
Confidence 34589999999998763 3 23467899998643
No 101
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=22.57 E-value=2.1e+02 Score=24.83 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred HHHHHHhhhcCCCeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 035867 75 CNGAIMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEK 154 (362)
Q Consensus 75 aNqaIleA~~g~~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~ 154 (362)
+-..+++.+...+.=+|+|+|.|.|. +=-.++.+ -|..++|+++.+. +.++-+.+.
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~---~~~~~v~~vDi~~--------------~a~~~a~~n--- 74 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKR---GPDAKVTAVDINP--------------DALELAKRN--- 74 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHT---STCEEEEEEESBH--------------HHHHHHHHH---
T ss_pred HHHHHHHHHhhccCCeEEEecCChHH----HHHHHHHh---CCCCEEEEEcCCH--------------HHHHHHHHH---
Confidence 44566777765566679999999985 22244443 3678899998653 234333332
Q ss_pred HHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEeccccccccccc-cCcHHHHH-HHHHhcCCcEEEE
Q 035867 155 FARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALHTIAAV-DDRRDVLI-SNLRSLQPRIITV 225 (362)
Q Consensus 155 fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh~l~~~-~~~~~~~L-~~ir~L~P~vvvl 225 (362)
++..++.- .+.+. .+-.+.+. -..=+.++.|=. +|.-... ....+.++ ..-+-|+|.-...
T Consensus 75 -~~~n~~~~-v~~~~-~d~~~~~~-----~~~fD~Iv~NPP--~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 75 -AERNGLEN-VEVVQ-SDLFEALP-----DGKFDLIVSNPP--FHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp -HHHTTCTT-EEEEE-SSTTTTCC-----TTCEEEEEE-----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -HHhcCccc-ccccc-cccccccc-----ccceeEEEEccc--hhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 44556662 33343 12223222 112246677765 2322210 11234444 4557789987663
No 102
>PTZ00346 histone deacetylase; Provisional
Probab=22.53 E-value=69 Score=33.01 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=37.4
Q ss_pred CeEEEecccccccccc------ccCcHHHHHHHHHhcCCcEEEEEcccccccCCCCCCchHHHHHHHHHHHHHHHH
Q 035867 188 EALAINCIGALHTIAA------VDDRRDVLISNLRSLQPRIITVVEEEVDLDVGIDGLEFVKGFQECLRWFRVYFE 257 (362)
Q Consensus 188 E~laVN~~~~Lh~l~~------~~~~~~~~L~~ir~L~P~vvvlvE~ea~~~~~~n~~~F~~RF~eaL~~Y~alfd 257 (362)
+.|+|.|-+=-|.--. .......+.+.+++++..++++.|. |+| +....+++.|..+++.
T Consensus 270 dlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleG------GY~----~~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 270 DAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGG------GYT----IRNVAKLWAYETSILT 335 (429)
T ss_pred CEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCC------cCC----ccHHHHHHHHHHHHHc
Confidence 5788888765553210 0112344678888898888888753 332 2447778888888754
No 103
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=22.24 E-value=3.2e+02 Score=24.78 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=23.5
Q ss_pred CeeEEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccC
Q 035867 87 SKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTS 127 (362)
Q Consensus 87 ~~VHIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~ 127 (362)
+..+|+|+|.|.|. +...++.+. |..++||++.+
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~ 120 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDIS 120 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECC
Confidence 34589999999984 444555432 44689999864
No 104
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=22.15 E-value=1.2e+02 Score=30.25 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=27.2
Q ss_pred hcCCcEEEEEcccccccCCCCCCchHHHHHHHHHHHH
Q 035867 217 SLQPRIITVVEEEVDLDVGIDGLEFVKGFQECLRWFR 253 (362)
Q Consensus 217 ~L~P~vvvlvE~ea~~~~~~n~~~F~~RF~eaL~~Y~ 253 (362)
..+-+-++++|.|+.. +|+|++-|.++|.+|.
T Consensus 95 ~~~~~~vIILEDDl~~-----sPdFf~yf~~~l~~y~ 126 (334)
T cd02514 95 LFGYSFVIILEDDLDI-----APDFFSYFQATLPLLE 126 (334)
T ss_pred hcCCCEEEEECCCCcc-----CHhHHHHHHHHHHHHh
Confidence 3567888889999887 7999999999998885
No 105
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=20.50 E-value=1.4e+02 Score=31.21 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEecccccc
Q 035867 141 VQKVMKEIGNRMEKFARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGALH 199 (362)
Q Consensus 141 ~~~~l~etg~rL~~fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~Lh 199 (362)
+++.+++.|.||.+-|..-+.||+|-.|.. ..+..+ ..+|--|+||.-+-++
T Consensus 72 l~~yv~~~g~rL~~~a~~~~~~f~f~lV~d-~~iNAF------A~~Gg~v~vntGLll~ 123 (484)
T COG4783 72 LEEYVNSLGQRLAAAADLVKTPFTFFLVND-DSINAF------ATPGGYVVVNTGLLLT 123 (484)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEEecC-Cccchh------hcCCceEEEehHHHHh
Confidence 567899999999999999999999988841 222222 3478899999976554
No 106
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.25 E-value=2e+02 Score=26.22 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=25.8
Q ss_pred HhhhcCCCeeEEEeccCCCC---CCcHHHHHHHhcCCCCCCeeEEEEeccCC
Q 035867 80 MEAFEGESKLHIVDISNTYC---TQWPTLLEALATRTDDTPHLRLTTVVTSK 128 (362)
Q Consensus 80 leA~~g~~~VHIIDf~i~~G---~QWpsLiq~La~R~~gpP~lrIT~i~~~~ 128 (362)
|-+++=.+.=|++|+|-|.| .+|. + -.|..|+++|+.+.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-----~-----~~p~~~v~AIe~~~ 68 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-----L-----AGPSGRVIAIERDE 68 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-----H-----hCCCceEEEEecCH
Confidence 44444344449999999988 3443 1 14788999998543
No 107
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=20.02 E-value=1.6e+02 Score=26.50 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=38.8
Q ss_pred EEEeccCCCCCCcHHHHHHHhcCCCCCCeeEEEEeccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCcEEEEEee
Q 035867 90 HIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVGGSGAGGLAAVQKVMKEIGNRMEKFARLMGVPFEFNVIH 169 (362)
Q Consensus 90 HIIDf~i~~G~QWpsLiq~La~R~~gpP~lrIT~i~~~~~~~~~~~~~~~~~~~~l~etg~rL~~fA~~~gvpfeF~~v~ 169 (362)
.|+|+|-|-|+ |.+.=+++. |.+++|-|++... .. .-|...++.+|++ ..+.+.
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~K--------------K~----~FL~~~~~~L~L~-nv~v~~ 104 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVGK--------------KV----AFLKEVVRELGLS-NVEVIN 104 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSHH--------------HH----HHHHHHHHHHT-S-SEEEEE
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCch--------------HH----HHHHHHHHHhCCC-CEEEEE
Confidence 69999998877 999888874 7789999986431 11 2345666778887 344443
Q ss_pred ccCCccc
Q 035867 170 HVGDLCD 176 (362)
Q Consensus 170 ~~~~~e~ 176 (362)
.+.|+
T Consensus 105 --~R~E~ 109 (184)
T PF02527_consen 105 --GRAEE 109 (184)
T ss_dssp --S-HHH
T ss_pred --eeecc
Confidence 46666
No 108
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=20.01 E-value=1.5e+02 Score=26.16 Aligned_cols=77 Identities=16% Similarity=0.350 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeeccCCcccCccccccccCCCeEEEecccc-ccccccc-c-------CcHHHHHHHHH
Q 035867 146 KEIGNRMEKFARLMGVPFEFNVIHHVGDLCDLNLAELDVRSDEALAINCIGA-LHTIAAV-D-------DRRDVLISNLR 216 (362)
Q Consensus 146 ~etg~rL~~fA~~~gvpfeF~~v~~~~~~e~l~~~~l~~~~~E~laVN~~~~-Lh~l~~~-~-------~~~~~~L~~ir 216 (362)
+|..+|+.++=+.. |-.|+.|....++.+. --...++.+|.|-|... +-+++.. . ...+.++..++
T Consensus 37 ~em~~RI~~H~~~R--~~~w~tiE~~~~l~~~---~~~~~~~~~vLlDclt~wl~n~l~~~~~~~~~~~~~i~~~l~~l~ 111 (167)
T PF02283_consen 37 EEMRERIARHRQRR--PKGWITIEEPRDLAEA---LEELSPGDVVLLDCLTLWLANLLFAEEDDEEDILEEIERLLEALR 111 (167)
T ss_dssp HHHHHHHHHHHHHS--STCEEEEE-SS-GGGT---S-TTS-T-EEEEE-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCcEEEecchhHHHH---HHHhccCCeEEEeCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 47788998888877 5567666422223322 11233478999999632 3333211 1 23566788888
Q ss_pred hcCCcEEEEEc
Q 035867 217 SLQPRIITVVE 227 (362)
Q Consensus 217 ~L~P~vvvlvE 227 (362)
+.++++|++++
T Consensus 112 ~~~~~lViVsn 122 (167)
T PF02283_consen 112 ERNADLVIVSN 122 (167)
T ss_dssp H--SEEEEEEE
T ss_pred ccCCCEEEEEc
Confidence 88888888874
Done!