BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035868
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 177/340 (52%), Gaps = 14/340 (4%)
Query: 21 VKNLCENGVTKVPKKYILP--EFDRADEVLQVDLTMPNLKLPVIDFSELQGPN---RSEV 75
V++L ++G+ +PK+YI P E + ++V + ++P ID ++ + R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 76 LKSLTSACEKYGFFQVVNHGIPNNVISSMIDVSARFFELPIEVRSKYMSSDLTAPVR-YG 134
++ L A +G ++NHGIP +++ + FF L +E + KY + T ++ YG
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 135 TSFNQNKDRVFCWRDFLKLVCHPSQDV-LVHWPSYPTDMRRLAVTYAKEIKNLFVMLMEA 193
+ N W D+ + +P + L WP P+D YAK ++ L + +A
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 194 ILESLGLWGATMNMTEEVEKLIKQFQDGSQQMVVNCYPPCPEPHLTLGMPPHSDYGFLTL 253
+ LGL + +EK + ++ QM +N YP CP+P L LG+ H+D LT
Sbjct: 187 LSVGLGL------EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 254 LLQDDVEGLQIQYKEKWVAVQPLASSFVVNVGDHLEIFSNGKYRSVLHRVLVNPAKSRIS 313
+L + V GLQ+ Y+ KWV + + S V+++GD LEI SNGKY+S+LHR LVN K RIS
Sbjct: 241 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 314 VASLHSLPFNSMV-SPSPSLINKANPRRYKDTDFACFLEY 352
A P + +V P P +++ +P ++ FA +E+
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 177/340 (52%), Gaps = 14/340 (4%)
Query: 21 VKNLCENGVTKVPKKYILP--EFDRADEVLQVDLTMPNLKLPVIDFSELQGPN---RSEV 75
V++L ++G+ +PK+YI P E + ++V + ++P ID ++ + R
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 76 LKSLTSACEKYGFFQVVNHGIPNNVISSMIDVSARFFELPIEVRSKYMSSDLTAPVR-YG 134
++ L A +G ++NHGIP +++ + FF L +E + KY + T ++ YG
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 135 TSFNQNKDRVFCWRDFLKLVCHPSQDV-LVHWPSYPTDMRRLAVTYAKEIKNLFVMLMEA 193
+ N W D+ + +P + L WP P+D YAK ++ L + +A
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 194 ILESLGLWGATMNMTEEVEKLIKQFQDGSQQMVVNCYPPCPEPHLTLGMPPHSDYGFLTL 253
+ LGL + +EK + ++ QM +N YP CP+P L LG+ H+D LT
Sbjct: 186 LSVGLGL------EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 239
Query: 254 LLQDDVEGLQIQYKEKWVAVQPLASSFVVNVGDHLEIFSNGKYRSVLHRVLVNPAKSRIS 313
+L + V GLQ+ Y+ KWV + + S V+++GD LEI SNGKY+S+LHR LVN K RIS
Sbjct: 240 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
Query: 314 VASLHSLPFNSMV-SPSPSLINKANPRRYKDTDFACFLEY 352
A P + +V P P +++ +P ++ FA +E+
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 173/340 (50%), Gaps = 14/340 (4%)
Query: 21 VKNLCENGVTKVPKKYILP--EFDRADEVLQVDLTMPNLKLPVIDFSELQGPN---RSEV 75
V++L ++G+ +PK+YI P E + ++V + ++P ID ++ + R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 76 LKSLTSACEKYGFFQVVNHGIPNNVISSMIDVSARFFELPIEVRSKYMSSDLTAPVR-YG 134
++ L A +G ++NHGIP ++ + FF L +E + KY + T ++ YG
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 135 TSFNQNKDRVFCWRDFLKLVCHPSQDV-LVHWPSYPTDMRRLAVTYAKEIKNLFVMLMEA 193
+ N W D+ + +P + L WP P+D YAK ++ L + +A
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 194 ILESLGLWGATMNMTEEVEKLIKQFQDGSQQMVVNCYPPCPEPHLTLGMPPHSDYGFLTL 253
+ LGL + +EK + ++ Q +N YP CP+P L LG+ H+D LT
Sbjct: 187 LSVGLGL------EPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 254 LLQDDVEGLQIQYKEKWVAVQPLASSFVVNVGDHLEIFSNGKYRSVLHRVLVNPAKSRIS 313
+L + V GLQ+ Y+ KWV + + S V ++GD LEI SNGKY+S+LHR LVN K RIS
Sbjct: 241 ILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 314 VASLHSLPFNSMV-SPSPSLINKANPRRYKDTDFACFLEY 352
A P + +V P P ++ +P ++ FA +E+
Sbjct: 301 WAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 143/282 (50%), Gaps = 22/282 (7%)
Query: 59 LPVIDFSELQGPNRSEVLKSLTSACEKYGFFQVVNHGIPNNVISSMIDVSARFFELPIEV 118
P+I ++ G R+ + + ACE +GFF++VNHGIP V ++ + ++ E
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQ 63
Query: 119 RSKYMSSDLTAPVRYGTSFNQNKDRVFCWRDFLKLVCHPSQDVLVHWPSYPTDMRRLAVT 178
R K + + + + + F FLK H + P + R +
Sbjct: 64 RFKELVASKALEGVQAEVTDXDWESTF----FLK---HLPISNISEVPDLDEEYREVXRD 116
Query: 179 YAKEIKNLFVMLMEAILESLGLWGATMNMTEEVEKLIKQFQDGSQQ----MVVNCYPPCP 234
+AK ++ L L++ + E+LGL + +K GS+ V+ YPPCP
Sbjct: 117 FAKRLEKLAEELLDLLCENLGL----------EKGYLKNAFYGSKGPNFGTKVSNYPPCP 166
Query: 235 EPHLTLGMPPHSDYGFLTLLLQDD-VEGLQIQYKEKWVAVQPLASSFVVNVGDHLEIFSN 293
+P L G+ H+D G + LL QDD V GLQ+ +W+ V P S VVN+GD LE+ +N
Sbjct: 167 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITN 226
Query: 294 GKYRSVLHRVLVNPAKSRISVASLHSLPFNSMVSPSPSLINK 335
GKY+SV HRV+ +R S+AS ++ ++++ P+P+L+ K
Sbjct: 227 GKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEK 268
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 121/283 (42%), Gaps = 26/283 (9%)
Query: 77 KSLTSACEKYGFFQVVNHGIPNNVISSMIDVSARFFELPIEVRSKY--MSSDLTAPVRYG 134
+ L ++ E+YGF + ++ + I + +D + FF LP+E + +Y + + +G
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG 83
Query: 135 TSFNQNKDRVFCWRDFLKLVCHPSQDVLVHWPSYPTDMRRLAVTYAKEIKNLFVMLMEAI 194
+ D LK H +D+ P + + EI F + +
Sbjct: 84 VETAKGADHYD-----LKEFWHXGRDLP---PGHRFRAHXADNVWPAEIP-AFKHDVSWL 134
Query: 195 LESL-GLWGATMNMTEEVEKLIKQF-----QDGSQQMVVNCYPPCPEPHLTLGMPPHSDY 248
SL G G + KL + F QDG+ + + YPP P+ + H D
Sbjct: 135 YNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDI 194
Query: 249 GFLTLLLQDDVEGLQIQYKE-KWVAVQPLASSFVVNVGDHLEIFSNGKYRSVLHRVLVNP 307
+TLLL + GL++ ++ +W+ + P V+N+GD LE +N S +HRV VNP
Sbjct: 195 NTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRV-VNP 253
Query: 308 AKSRISVASLHSLPF------NSMVSPSPSLINKANPRRYKDT 344
R V +S PF + + + + NP RY ++
Sbjct: 254 PPERRGVPR-YSTPFFLHFASDYEIKTLQNCVTAENPDRYPES 295
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 46/302 (15%)
Query: 59 LPVIDFSELQGPNRS---EVLKSLTSACEKYGFFQVVNHGIPNNVISS------MIDVSA 109
+P ID S L G +++ V + + +A GFF VNHGI +S M
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 110 RFFELPIEVRSKYMSSDLTAPVRYGTSFNQNKDRVFCWR------DFLKLVCH-PSQDVL 162
++L I +K + A Y + + FC+ D ++ P+ +V
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGY-YLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVN 127
Query: 163 VHWPS---YPTDMRRLAVTYAKEIKNLFVMLMEAILESLGLWGATMNMTEEVEKLIKQFQ 219
V WP +P + A Y ++ L L++ +LG +E + F+
Sbjct: 128 V-WPDETKHPG-FQDFAEQYYWDVFGLSSALLKGYALALG---------KEENFFARHFK 176
Query: 220 --DGSQQMVVNCYP---PCPEPHLT-------LGMPPHSDYGFLTLLLQDDVEGLQIQYK 267
D +V+ YP P PE + L H D +T+L Q +V+ LQ++
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETA 236
Query: 268 EKWVAVQPLASSFVVNVGDHLEIFSNGKYRSVLHRV-LVNPAKSRISVASLHSLPFNSMV 326
+ ++ + +++N G ++ +N Y++ +HRV VN R S+ +L ++S++
Sbjct: 237 AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN--AERQSLPFFVNLGYDSVI 294
Query: 327 SP 328
P
Sbjct: 295 DP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 46/302 (15%)
Query: 59 LPVIDFSELQGPNRS---EVLKSLTSACEKYGFFQVVNHGIPNNVISS------MIDVSA 109
+P ID S L G +++ V + + +A GFF VNHGI +S M
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 110 RFFELPIEVRSKYMSSDLTAPVRYGTSFNQNKDRVFCWR------DFLKLVCH-PSQDVL 162
++L I +K + A Y + + FC+ D ++ P+ +V
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGY-YLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVN 127
Query: 163 VHWPS---YPTDMRRLAVTYAKEIKNLFVMLMEAILESLGLWGATMNMTEEVEKLIKQFQ 219
V WP +P + A Y ++ L L++ +LG +E + F+
Sbjct: 128 V-WPDETKHPG-FQDFAEQYYWDVFGLSSALLKGYALALG---------KEENFFARHFK 176
Query: 220 --DGSQQMVVNCYP---PCPEPHLT-------LGMPPHSDYGFLTLLLQDDVEGLQIQYK 267
D +V+ YP P PE + L H D +T+L Q +V+ LQ++
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETA 236
Query: 268 EKWVAVQPLASSFVVNVGDHLEIFSNGKYRSVLHRV-LVNPAKSRISVASLHSLPFNSMV 326
+ ++ + +++N G ++ +N Y++ +HRV VN R S+ +L ++S++
Sbjct: 237 AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN--AERQSLPFFVNLGYDSVI 294
Query: 327 SP 328
P
Sbjct: 295 DP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 230 YPPCP--EPHLTLGMPPHSDYGFLTLLLQDDVEGLQIQYKE-KWVAVQPLASSFVVNVGD 286
YPP E + H D +T+L + GLQ++ K+ W+ V + ++N+GD
Sbjct: 157 YPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGD 216
Query: 287 HLEIFSNGKYRSVLHRVLVNP-----AKSRISVASLHSLPFNSMVSPSPSLI 333
L+ S+G + S HRV +NP KSRI SLP + P PS++
Sbjct: 217 XLQEASDGYFPSTSHRV-INPEGTDKTKSRI------SLPL--FLHPHPSVV 259
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 165 WPSYPTDMRRLAVTYAKEIKNLFVMLMEAILESLGLWGATMNMTEEVEKLIKQFQD---G 221
WPS+P D+ RL AK I + E LG + +++EE E+L+ ++ G
Sbjct: 260 WPSFPQDIPRLTHAEAKRI----------LKEELG-YPVGQDLSEEAERLLGEYAKERWG 308
Query: 222 SQQMVVNCYPPCPEPHLT 239
S + V YP P T
Sbjct: 309 SDWLFVTRYPRSVRPFYT 326
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
Query: 140 NKDRVFCWRDFLKLVCHPSQDVLVHWPSYPTDMRRL---AVTYAKEIKNLFVMLM----E 192
+++ + W+DF+ C P +PS PT ++R+ AV + ++N + M
Sbjct: 385 DENGILVWQDFM-FACTP-------YPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNN 436
Query: 193 AILESLGLWGATMNMTEEV 211
ILE+L WG T EV
Sbjct: 437 EILEALKYWGFEKKFTPEV 455
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
Query: 140 NKDRVFCWRDFLKLVCHPSQDVLVHWPSYPTDMRRL---AVTYAKEIKNLFVMLM----E 192
+++ + W+DF+ C P +PS PT ++R+ AV + ++N + M
Sbjct: 385 DENGILVWQDFM-FACTP-------YPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNN 436
Query: 193 AILESLGLWGATMNMTEEV 211
ILE+L WG T EV
Sbjct: 437 EILEALKYWGFEKKFTPEV 455
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
Query: 140 NKDRVFCWRDFLKLVCHPSQDVLVHWPSYPTDMRRL---AVTYAKEIKNLFVMLM----E 192
+++ + W+DF+ C P +PS PT ++R+ AV + ++N + M
Sbjct: 385 DENGILVWQDFM-FACTP-------YPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNN 436
Query: 193 AILESLGLWGATMNMTEEV 211
ILE+L WG T EV
Sbjct: 437 EILEALKYWGFEKKFTPEV 455
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
Query: 140 NKDRVFCWRDFLKLVCHPSQDVLVHWPSYPTDMRRL---AVTYAKEIKNLFVMLM----E 192
+++ + W+DF+ C P +PS PT ++R+ AV + ++N + M
Sbjct: 387 DENGILVWQDFM-FACTP-------YPSDPTFLKRVEAEAVYNIRRLRNHASLAMWCGNN 438
Query: 193 AILESLGLWGATMNMTEEV 211
ILE+L WG T EV
Sbjct: 439 EILEALKYWGFEKKFTPEV 457
>pdb|4AW7|A Chain A, Bpgh86a: A Beta-Porphyranase Of Glycoside Hydrolase Family
86 From The Human Gut Bacterium Bacteroides Plebeius
Length = 591
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 96 IPNNVISSMIDVSARFFELPIEVRSKYMSSDLTAPVRYGTS 136
+PN I + DVS+ F I +R+KY SS+ P+ G+S
Sbjct: 451 VPNQTIVLVADVSSSAFTNSI-IRNKYYSSEYLKPISAGSS 490
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,899,628
Number of Sequences: 62578
Number of extensions: 446886
Number of successful extensions: 1260
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1235
Number of HSP's gapped (non-prelim): 17
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)