BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035869
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 220/407 (54%), Gaps = 40/407 (9%)
Query: 23 KHMKVSFIDQHAPPVYMPFIFYYPAXXXXXXKPQNIVTINLLQKSLSEILTLYYPLAGRY 82
K K+S +DQ ++PFI +YP P T L++SLS++LT +YPLAGR
Sbjct: 24 KCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQ--TSQHLKQSLSKVLTHFYPLAGRI 81
Query: 83 DSENALVNCNDEGVEFIEAKVDGQLSRILNGEFETDLLNKFLPN-----GYAESATSPLL 137
+ N+ V+CND GV F+EA+V QLS+ + E + L+++LP+ G E L
Sbjct: 82 NV-NSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPL 140
Query: 138 ATQINMFNCGGLAIGICMSHRIADGFAFSTFINAWAKSCRLGLNEVSSPSFELGI-FFPA 196
A +I+ F CGG AIG+ +SH+IAD + +TF+NAW +CR G E+ P+F+L FP
Sbjct: 141 AVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCR-GETEIVLPNFDLAARHFPP 199
Query: 197 VRDLPNIEAAAAPLKSGLKIVTKRFLFDGKAITKLKAEV----DDRQVTRVQMVIALIWK 252
V + P+ E L +V KRF+FD + I L+A+ +++ +RVQ+V+A IWK
Sbjct: 200 VDNTPSPE-----LVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWK 254
Query: 253 AHISALRAKRGHLRDFLLMLPMNLRGKTVPRVSENCYGNLYKFTNPRFNADESNMELHNF 312
I RAK G F+++ +NLR + P + GN+ +A+ +F
Sbjct: 255 HVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDK----DF 310
Query: 313 VDLIGNAFRNPSLDSAKTDEFGDDDFFSAVIDSYKEYCEELNKDEADVCTYTSCCRFPIY 372
DLIG R SL+ KT++ + + + Y+ +EL ++TS CR Y
Sbjct: 311 PDLIG-PLRT-SLE--KTEDDHNHELLKGMTCLYELEPQEL-------LSFTSWCRLGFY 359
Query: 373 -VDFGWGKPAWVSGIRMSF---ETVILLDNKEGNAIEAWVSLEEENM 415
+DFGWGKP +S +F +L+D + G+ +EAW+ + E+ M
Sbjct: 360 DLDFGWGKP--LSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEM 404
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 178/424 (41%), Gaps = 69/424 (16%)
Query: 33 HAPPVYMPFIFYYPAXXXXXXKPQNIVTINLLQKSLSEILTLYYPLAGRY--DSENAL-V 89
H P VY FY P N +L+ +LS L +YP+AGR D + + +
Sbjct: 37 HTPSVY----FYRPTGS------SNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEI 86
Query: 90 NCNDEGVEFIEAKVDGQLSRILNGEFETDL-LNKFLPN-GYAESATS-PLLATQINMFNC 146
CN EGV F+EA+ DG + G+F L L + +P Y++ +S LL Q+ F C
Sbjct: 87 ECNGEGVLFVEAESDGVVDDF--GDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKC 144
Query: 147 GGLAIGICMSHRIADGFAFSTFINAWAKSCRLGLNEVSSPSFELGIFFPAVRDLPN---- 202
GG+++G+ M H ADGF+ FIN+W+ R GL+ P + + RD P
Sbjct: 145 GGVSLGVGMRHHAADGFSGLHFINSWSDMAR-GLDVTLPPFIDRTLL--RARDPPQPQFQ 201
Query: 203 -----------IEAAAAPLKSGLKIVTKRFLFDGKAITKLKAEVDDRQVT----RVQMVI 247
+ A S + F + I+ LKA+ + T +M+
Sbjct: 202 HIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLA 261
Query: 248 ALIWKAHISA--LRAKRGHLRDFLLMLPMNLRGKTVPRVSENCYGNLYKFTNPRFNADE- 304
+W+ A L +G L + + R + P + +GN+ P A +
Sbjct: 262 GHVWRCACKARGLEVDQGT----KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDL 317
Query: 305 -------SNMELHNFVDLIGNAFRNPSLDSAKTDEFGDDDFFSAVIDSYKEYCEELNKDE 357
+ ++H+ + + N + +LD + D + V ++ C L
Sbjct: 318 EFKPVWYAASKIHDALARMDNDYLRSALDYLELQP----DLKALVRGAHTFKCPNLG--- 370
Query: 358 ADVCTYTSCCRFPIY-VDFGWGKPAWVSGIRMSFE--TVILLDNKEGNAIEAWVSLEEEN 414
TS R PI+ DFGWG+P ++ +++E + IL ++ +SL+ E+
Sbjct: 371 -----ITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEH 425
Query: 415 MFHF 418
M F
Sbjct: 426 MKLF 429
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 179/425 (42%), Gaps = 71/425 (16%)
Query: 33 HAPPVYMPFIFYYPAXXXXXXKPQNIVTINLLQKSLSEILTLYYPLAGRY--DSENAL-V 89
H P VY FY P N +L+ +LS L +YP+AGR D + + +
Sbjct: 40 HTPSVY----FYRPTGS------SNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEI 89
Query: 90 NCNDEGVEFIEAKVDGQLSRILNGEFETDL-LNKFLPN-GYAESATS-PLLATQINMFNC 146
CN EGV F+EA+ DG + G+F L L + +P Y++ +S LL Q+ F C
Sbjct: 90 ECNGEGVLFVEAESDGVVDDF--GDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKC 147
Query: 147 GGLAIGICMSHRIADGFAFSTFINAWAKSCRLGLNEVSSPSFELGIF---------FPAV 197
GG+++G+ M H ADGF+ FIN+W+ R GL+ P + + F +
Sbjct: 148 GGVSLGVGMRHHAADGFSGLHFINSWSDMAR-GLDVTLPPFIDRTLLRARDPPQPQFQHI 206
Query: 198 RDLPNIEAAAAPLKSGLKIVTKR----FLFDGKAITKLKAEVDDRQVT----RVQMVIAL 249
P A +P + V + F + I+ LKA+ + T +M+
Sbjct: 207 EYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGH 266
Query: 250 IWKAHISA--LRAKRGHLRDFLLMLPMNLRGKTVPRVSENCYGNLYKFTNPRFNADESNM 307
+W+ A L +G L + + R + P + +GN+ P
Sbjct: 267 VWRCACKARGLEVDQGT----KLYIATDGRARLRPSLPPGYFGNVIFTATP--------- 313
Query: 308 ELHNFVDLIGNAFRNPSLDSAKT--DEFG--DDDFFSAVIDSYKEYCEELNKDEADVCTY 363
+ + G+ P +A D D+D+ + +D Y E +L T+
Sbjct: 314 -----IAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALD-YLELQPDLKALVRGAHTF 367
Query: 364 -------TSCCRFPIY-VDFGWGKPAWVSGIRMSFE--TVILLDNKEGNAIEAWVSLEEE 413
TS R PI+ DFGWG+P ++ +++E + IL ++ +SL+ E
Sbjct: 368 KXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGE 427
Query: 414 NMFHF 418
+M F
Sbjct: 428 HMKLF 432
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 178/425 (41%), Gaps = 71/425 (16%)
Query: 33 HAPPVYMPFIFYYPAXXXXXXKPQNIVTINLLQKSLSEILTLYYPLAGRY--DSENAL-V 89
H P VY FY P N +L+ +LS L +YP+AGR D + + +
Sbjct: 40 HTPSVY----FYRPTGS------SNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEI 89
Query: 90 NCNDEGVEFIEAKVDGQLSRILNGEFETDL-LNKFLPN-GYAESATS-PLLATQINMFNC 146
CN EGV F+EA+ DG + G+F L L + +P Y++ +S LL Q+ F
Sbjct: 90 ECNGEGVLFVEAESDGVVDDF--GDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKX 147
Query: 147 GGLAIGICMSHRIADGFAFSTFINAWAKSCRLGLNEVSSPSFELGIF---------FPAV 197
GG+++G+ M H ADGF+ FIN+W+ R GL+ P + + F +
Sbjct: 148 GGVSLGVGMRHHAADGFSGLHFINSWSDMAR-GLDVTLPPFIDRTLLRARDPPQPQFQHI 206
Query: 198 RDLPNIEAAAAPLKSGLKIVTKR----FLFDGKAITKLKAEVDDRQVT----RVQMVIAL 249
P A +P + V + F + I+ LKA+ + T +M+
Sbjct: 207 EYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGH 266
Query: 250 IWKAHISA--LRAKRGHLRDFLLMLPMNLRGKTVPRVSENCYGNLYKFTNPRFNADESNM 307
+W+ A L +G L + + R + P + +GN+ P
Sbjct: 267 VWRCACKARGLEVDQGT----KLYIATDGRARLRPSLPPGYFGNVIFTATP--------- 313
Query: 308 ELHNFVDLIGNAFRNPSLDSAKT--DEFG--DDDFFSAVIDSYKEYCEELNKDEADVCTY 363
+ + G+ P +A D D+D+ + +D Y E +L T+
Sbjct: 314 -----IAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALD-YLELQPDLKALVRGAHTF 367
Query: 364 -------TSCCRFPIY-VDFGWGKPAWVSGIRMSFE--TVILLDNKEGNAIEAWVSLEEE 413
TS R PI+ DFGWG+P ++ +++E + IL ++ +SL+ E
Sbjct: 368 KXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGE 427
Query: 414 NMFHF 418
+M F
Sbjct: 428 HMKLF 432
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/436 (21%), Positives = 156/436 (35%), Gaps = 54/436 (12%)
Query: 23 KHMKVSFID---QHAPPVYMPFIFYYPAXXXXXXKPQNIVTINLLQKSLSEILTLYYPLA 79
K ++++F D +PP+ F + P + + ++ SLS L +YP
Sbjct: 25 KSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTE----TVVPNIKHSLSITLKHFYPFV 80
Query: 80 GRY--------DSENALVNCNDEGVEFIEAKVD-GQLSRILNGEFETDLLNKFLP----- 125
G+ E V + V F E +D +L+ N D +P
Sbjct: 81 GKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTG--NHPRNCDKFYDLVPILGES 138
Query: 126 NGYAESATSPLLATQINMFNCGGLAIGICMSHRIADGFAFSTFINAWAKSCRLGLNEVS- 184
++ PL + Q+ +F G+AIGI H + D F+ AW R G N+ S
Sbjct: 139 TRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESF 198
Query: 185 -----SPSFELGIFFPAVRDLP---------NIEAAAAPLKSGLKIVTKRFLFDGKAITK 230
P ++ I +P + + N + L + F+ I +
Sbjct: 199 LANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQ 258
Query: 231 LKAEVDDRQVTRVQMVIALIWKAHISALRAKRGHLRDFLLMLPMNLRGKTVPRVSE---- 286
LK V + T + + A+I + AK + + L P++ R + P +
Sbjct: 259 LKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARMKPPIPTAYFG 318
Query: 287 NCYGNLYKFTNPRFNADESNMELHNFVDLIGNAFRNPSLDSAKTDEFGDDDFFSAVIDSY 346
NC G + N LIG +L K DD ++S+
Sbjct: 319 NCVGGCAAIA--KTNLLIGKEGFITAAKLIGENLHK-TLTDYKDGVLKDD------MESF 369
Query: 347 KEYCEELNKDEADVCTYTSCCRFPIYVDFGWGKPAWVSGIRMSFETVILLDN-KEGNA-I 404
+ E + T RF +DFGWGKP + + + I +++ KE N +
Sbjct: 370 NDLVSEGMPTTMTWVSGTPKLRF-YDMDFGWGKPKKLETVSIDHNGAISINSCKESNEDL 428
Query: 405 EAWVSLEEENMFHFLQ 420
E V + M F+
Sbjct: 429 EIGVCISATQMEDFVH 444
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/440 (21%), Positives = 156/440 (35%), Gaps = 57/440 (12%)
Query: 23 KHMKVSFID---QHAPPVYMPFIFYYPAXXXXXXKPQNIVTINLLQKSLSEILTLYYPLA 79
K ++++F D +PP+ F + P + + ++ SLS L +YP
Sbjct: 25 KSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTE----TVVPNIKHSLSITLKHFYPFV 80
Query: 80 GRY--------DSENALVNCNDEGVEFIEAKVD-GQLSRILNGEFETDLLNKFLP----- 125
G+ E V + V F E +D +L+ N D +P
Sbjct: 81 GKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTG--NHPRNCDKFYDLVPILGES 138
Query: 126 NGYAESATSPLLATQINMFNCGGLAIGICMSHRIADGFAFSTFINAWAKSCRLGLNEVS- 184
++ PL + Q+ +F G+AIGI H + D F+ AW R G N+ S
Sbjct: 139 TRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESF 198
Query: 185 -----SPSFELGIFFPAVRDLP---------NIEAAAAPLKSGLKIVTKRFLFDGKAITK 230
P ++ I +P + + N + L + F+ I +
Sbjct: 199 LANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQ 258
Query: 231 LKAEVDDRQVTRVQMVIALIWKAHISALRAKRGHLRDFLLMLPMNLRGKTVPRVSE---- 286
LK V + T + + A+I + AK + + L P++ R + P +
Sbjct: 259 LKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARXKPPIPTAYFG 318
Query: 287 NCYGNLYKFTNPRFNADESNMELHNFVDLIGNAFRNPSLDSAKTDEFGDDDFFSAVIDSY 346
NC G + N LIG +L K DD +S+
Sbjct: 319 NCVGGCAAIA--KTNLLIGKEGFITAAKLIGENLHK-TLTDYKDGVLKDD------XESF 369
Query: 347 KEYCEELNKDEADVCTYTSCCRFPIYVDFGWGKPAWVSGIRMSFETVILLDN-KEGNA-I 404
+ E + T RF DFGWGKP + + + I +++ KE N +
Sbjct: 370 NDLVSEGXPTTXTWVSGTPKLRF-YDXDFGWGKPKKLETVSIDHNGAISINSCKESNEDL 428
Query: 405 EAWVSL---EEENMFHFLQD 421
E V + + E+ H D
Sbjct: 429 EIGVCISATQXEDFVHIFDD 448
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 28/142 (19%)
Query: 61 INLLQKSLSEILTLYYPLAGRYDSENALVNCNDEGVEFIEAK-VDGQLSRILNGEFETDL 119
I L+ SLS L Y PLAG V C + + E + V G ++ E + D
Sbjct: 57 IPTLKDSLSLTLKYYLPLAGN-------VACPQDWSGYPELRYVTGNSVSVIFSESDXDF 109
Query: 120 -------------LNKFLPNGYAESAT------SPLLATQINMFNCGGLAIGICMSHRIA 160
F+P AE +P+LA Q+ +F G++IG H
Sbjct: 110 NYLIGYHPRNTKDFYHFVPQ-LAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAG 168
Query: 161 DGFAFSTFINAWAKSCRLGLNE 182
DG F+ AWA + G +E
Sbjct: 169 DGATIVKFVRAWALLNKFGGDE 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,285,764
Number of Sequences: 62578
Number of extensions: 509073
Number of successful extensions: 1147
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 21
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)