BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035870
(842 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 131/268 (48%), Gaps = 13/268 (4%)
Query: 576 NISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLE 635
N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K + G +L+
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDXTLQEAQIAKIDLALGKLGLQPGXTLLD 70
Query: 636 IGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695
+GCGWG V++ G+TLS+ Q + + V + R+ L + Q +
Sbjct: 71 VGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP- 129
Query: 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS--IPDERYNEYRLSS--- 750
DRI+S E GHE + FF LL DG+ +L I+ P E + S
Sbjct: 130 -VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVXLLHTITGLHPKEIHERGLPXSFTF 188
Query: 751 ----DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQ 806
FI IFPGG LPS+ + S A+ V +V+++ HY +TL W +
Sbjct: 189 ARFLKFIVTEIFPGGRLPSIPXVQECAS-ANGFTVTRVQSLQPHYAKTLDLWSAALQANK 247
Query: 807 SKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ +AL + + R + Y CA F+
Sbjct: 248 GQAIALQSEEVYER-YXKYLTGCAEXFR 274
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 133/268 (49%), Gaps = 13/268 (4%)
Query: 576 NISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLE 635
N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K + G +L+
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLD 70
Query: 636 IGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695
+GCGWG + V++ G+TLS+ Q + + V + R+ L + Q +
Sbjct: 71 VGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE-- 128
Query: 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS--IPDERYNEYRLSS--- 750
DRI+S E GHE + FF LL DG+++L I+ P E + S
Sbjct: 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTF 188
Query: 751 ----DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQ 806
FI IFPGG LPS+ + S A+ V +V+++ HY +TL W +
Sbjct: 189 ARFLKFIVTEIFPGGRLPSIPMVQECAS-ANGFTVTRVQSLQPHYAKTLDLWSAALQANK 247
Query: 807 SKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ +AL + + R + Y CA F+
Sbjct: 248 GQAIALQSEEVYER-YMKYLTGCAEMFR 274
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
N LT ++ HYDLS++ F LFLD + TYSCA F+ ED L+ AQ+ K+ L + K +
Sbjct: 3 NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G +L+IGCGWG + + G+TLS+ Q + + E R+ L
Sbjct: 63 QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAG 122
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS-IPDERYNEY 746
+ Q + DRI+S E GH+ +FF +L DG+L+L I+ + ++ ++
Sbjct: 123 WEQFNEP--VDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 747 RLS--------SDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798
L FI IFPGG P++ + S + + + +++ HY +TL W
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV-EEQSAKTGFTLTRRQSLQPHYARTLDLW 239
Query: 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ E +S+ +A+ + + R + Y CA F+
Sbjct: 240 AEALQEHKSEAIAIQSEEVYER-YMKYLTGCAKLFR 274
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 15/276 (5%)
Query: 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSK 629
LT N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K +
Sbjct: 5 LTPHFGNVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEP 64
Query: 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689
G +L+IGCGWG +++ G+TLSE Q + + + R+ L +
Sbjct: 65 GMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGWE 124
Query: 690 QLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER------- 742
+ + DRI+S E GH+ FF L DG ++L I P +
Sbjct: 125 KFDEP--VDRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGREKGL 182
Query: 743 --YNEYRLSSDFIKEYIFPGGCLPSLSRITS-AMSVASRLCVEQVENIGIHYYQTLRCWR 799
+E + FI IFPGG LPS+ + A V R V V+++ +HY +TL W
Sbjct: 183 TLTHELVHFTKFILAEIFPGGWLPSIPTVHEYAEKVGFR--VTAVQSLQLHYARTLDMWA 240
Query: 800 KNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKS 835
+ + +A+ + R + Y CA F+
Sbjct: 241 TALEANKDQAIAIQSQTVYDR-YMKYLTGCAKLFRQ 275
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 132/278 (47%), Gaps = 27/278 (9%)
Query: 569 TLTQAR-RNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
T T+ R +I HYD+S++ F+LF D + TYSCA F+ + L+ AQ KV L ++K +
Sbjct: 29 TKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDL 88
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G +L+IGCGWGT V+R G+TLS+ Q E + ++ L
Sbjct: 89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG 148
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR 747
+ A+ DRI+S E E GHE ++FF C +++ DG + +Q Y+ Y
Sbjct: 149 WEDFAEP--VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ----SSVSYHPYE 202
Query: 748 LSS-------------DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQT 794
+++ FI IFPGG LPS + A V + ++ HY +T
Sbjct: 203 MAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSLRPHYIKT 261
Query: 795 LRCWRKNFMEKQSKILALGFND------KFIRTWEYYF 826
LR W + K + + + K++R E+YF
Sbjct: 262 LRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYF 299
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 118/252 (46%), Gaps = 19/252 (7%)
Query: 577 ISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEI 636
+ HYD SNE F L+LD SMTYSCA F+ D L+ AQ K L ++K + G +L+I
Sbjct: 20 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDI 79
Query: 637 GCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696
GCGWG+ V G+TLSE Q + + E + + + + +
Sbjct: 80 GCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP-- 137
Query: 697 YDRIISCEMIE-------AVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD-ERYNEYRL 748
DRI+S E G E + FF +L +DG ++L I+IPD E E L
Sbjct: 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGL 197
Query: 749 SS--------DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRK 800
+S FI IFPGG LP +S++ S A VE+ IG +Y TL W
Sbjct: 198 TSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAG-WKVERYHRIGANYVPTLNAWAD 256
Query: 801 NFMEKQSKILAL 812
+ + +AL
Sbjct: 257 ALQAHKDEAIAL 268
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
VA++GAGISGL +A L KAG+ V + E D +GG T T DG L++G
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
LL V G +++ GCG G + +R GCK G+TLS Q ++ + +E G+ D
Sbjct: 116 LLDHLGPVGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDD 175
Query: 680 LIRLYLCD 687
+R +C+
Sbjct: 176 HVRSRVCN 183
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
RVAVIGAG+SGL +AY L G+ V ++E + GG ++V+ DG+ D G
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEG 65
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V ++GAG SGL +A L KAG+ V + E D +GG T T DG L++G + P
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIG----GQWVSP 65
Query: 63 N---MMEFFESLGVDM 75
+ +ME + LG+ M
Sbjct: 66 DQTVLMELLDELGLKM 81
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
VA++GAG SGL +A L KAG+ V + E D +GG T T DG L++G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
VA++GAG SGL +A L KAG+ V + E D +GG T T DG L++G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
VA++GAG SGL +A L KAG+ V + E D +GG T T DG L++G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41
RV ++GAG+SGL +AYVLA AG +V + E + GG KT
Sbjct: 48 RVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKT 87
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
RV V+GAG+SG+ +A L++AG+ ++++ E D++GG F G++++LG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
RV V+GAG+SG+ +A L++AG+ ++++ E D++GG F G++++LG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEI---VKRTGCKYTGITLSEEQLKYAEMKV 672
+ +L+E V K ++L++GCG+G + I + VK T T ++ +K A+ +
Sbjct: 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKST----TXADINRRAIKLAKENI 94
Query: 673 KEAGLQDL-IRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729
K L + IR+ D + K KY++II+ I A G E + + LL ++G
Sbjct: 95 KLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNG 151
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 339
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 340 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 367
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 217
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 218 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 245
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 169 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 196
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 217
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 218 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 245
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 169
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 170 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 197
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 169 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 196
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 169 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 196
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHG 91
N M S V+ME++ + L + +G
Sbjct: 169 -NPMAVV-SKQVNMELAKIKQKCPLYEANG 196
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD--LDLGFM 54
V V+GAG+SGL +AYVL+ AG +V + E + GG +T D D +LG M
Sbjct: 36 VVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKEDWYANLGPM 89
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41
V V+GAG+SGL +AYVLA AG +V + E + GG +T
Sbjct: 36 VVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRT 74
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
V VIG GISGL +A +L + GV V++ E D +GG T+ + VD +D+G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 66
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
V VIG GISGL +A +L + GV V++ E D +GG T+ + VD +D+G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 55
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
V VIG GISGL +A +L + GV V++ E D +GG T+ + VD +D+G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 55
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 47/115 (40%)
Query: 577 ISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEI 636
+ + YD + F+ E++ + D + A R I V G VL++
Sbjct: 9 VRQXYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEXIALLDVRSGDRVLDV 68
Query: 637 GCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691
GCG G A+ + + TGI++S Q+ A + AGL + + D L
Sbjct: 69 GCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDL 123
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 3 VAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRV 59
V V+G GISGL ++Y L++A +VVL E + LGG ++V +G +LG R
Sbjct: 5 VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELG----PRG 60
Query: 60 TYP------NMMEFFESLGVDMEMSDMSFSVSLEKGH-----GCEWGSRNGLSSLFAQKK 108
P + LG+D E+ + + G GL L
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP 120
Query: 109 NVLNPYFWQMLREIIKFK 126
P FW LRE+ K +
Sbjct: 121 PFSKPLFWAGLRELTKPR 138
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41
V ++GAG++GL +AYVLA AG +V + E + GG +T
Sbjct: 36 VVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRT 74
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Id Mar208
Length = 425
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
+ VIGAG+ GL+SA L+KAG EV ++E+ GG +++ G L G
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSG 52
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL 685
+V G+ + +IGCG GT + + + TG+ LSEE L+ A+ K E + ++
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLADHY--EVTGVDLSEEXLEIAQEKAXETNRH--VDFWV 85
Query: 686 CDYRQLAKANKYDRI-ISCEMIEAVGHEF-MEEFFGCCESLLAEDGLLVL 733
D R+L D I I C+ + + E +++ F LL + G L+
Sbjct: 86 QDXRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
VIGAG GL A L AG+ V+L E+ D GG A G D G V +T P
Sbjct: 4 TTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTV---ITDP 60
Query: 63 NMME 66
+ +E
Sbjct: 61 SAIE 64
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
+ + E+L+IGCG G +++E+ + G TGI ++ E ++ AE + GL
Sbjct: 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN 78
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVT-FDGVDLDLG 52
+V +IGAGI+GL +A L + G++ ++ E D +GG +TVT + G D+G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVT-FDGVDLDLG 52
+V +IGAGI+GL +A L + G++ ++ E D +GG +TVT + G D+G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVT-FDGVDLDLG 52
+V +IGAGI+GL +A L + G++ ++ E D +GG +TVT + G D+G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVT-FDGVDLDLG 52
+V +IGAGI+GL +A L + G++ ++ E D +GG +TVT + G D+G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVT-FDGVDLDLG 52
+V +IGAGI+GL +A L + G++ ++ E D +GG +TVT + G D+G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 129/308 (41%), Gaps = 48/308 (15%)
Query: 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAKTVTFDGVDLDLG--FMVFN 57
R+ ++G GI+GL +AY +A + + L E + LGG T DG ++ G V
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVAR 65
Query: 58 RVTYPNMMEFFESLGVDMEMSDMSFSVSLEKG--HGCEWGSRNGLSS---LFAQKKNVLN 112
+ +++E LG + ++ S + L+ G H G+ G+ + LF Q +L
Sbjct: 66 KHILTDLIEAI-GLGEKLVRNNTSQAFILDTGGLHPIPKGAVXGIPTDLDLFRQ-TTLLT 123
Query: 113 PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGS 172
Q + +++ D L E+ DI LG+++ R L +K + P+
Sbjct: 124 EEEKQEVADLLLHPSDSLRIPEQ-----DI----PLGEYLRPRLGDALVEK-LIEPLLSG 173
Query: 173 IWSCPSEGVTSFSAFSVLSFCRNHH--------------LLQLFGRP--------QWLTV 210
I++ + ++F+ + F N L QL P Q+L++
Sbjct: 174 IYAGNIDQXSTFATYP--QFVANEQKAGSLFEGXRLXRPLDQLPQTPQTTIKATGQFLSL 231
Query: 211 RWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270
S + ++ + LE +IR + + ++ D G + D E+ + ++ + P
Sbjct: 232 ETGLESLIERLEEVLER--SEIRLETPLLAISRED-GRYRLKTDHGPEYADYVLLTIPHP 288
Query: 271 DALKILGN 278
+++L +
Sbjct: 289 QVVQLLPD 296
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG 46
M VAV+G GISGL A+ L G + VL E LGG T G
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG 62
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 633 VLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
+++ GCG G + +R G + G+TLS Q + + +E + D +R +C+
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
V VIG GISGL +A +L++ + V++ E D +GG TV + V +D+G
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVG 74
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA---KTVTFDGVDLDLGFMVFNRVTY 61
V+G G SGL +A L AG +V+L E + LGG A ++ G+ +++G +R +
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHH 65
Query: 62 PNMMEFFESLGV 73
P + + G+
Sbjct: 66 PRLAAELDRYGI 77
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA---KTVTFDGVDLDLGFMVFNRVTY 61
V+G G SGL +A L AG +V+L E + LGG A ++ G+ +++G +R +
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHH 65
Query: 62 PNMMEFFESLGV 73
P + + G+
Sbjct: 66 PRLAAELDRYGI 77
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31
R+AV+G ISGL +A +L AGV+V +YE+
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYER 36
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD-DYLGGHAKT 41
R+ ++GAGI+GLV+ +L +AG +V + E + + +GG KT
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G K + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIKAGVLEQGMVDL 55
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
V VIG G GL + L AG + +L E D +GG + + DG ++G
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMG 91
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
V VIG G GL + L AG + +L E D +GG + + DG ++G
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMG 91
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
V VIG G GL + L AG + +L E D +GG + + DG ++G
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMG 91
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEI-VKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
+IE A + G VL+ CG GT+ IE+ ++R + GI + L AEM AG+ D
Sbjct: 210 MIELAELDGGS-VLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLD 268
Query: 680 LIRLYLCDYRQLAK 693
I+ D QL++
Sbjct: 269 KIKFIQGDATQLSQ 282
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
VA+IG G GL A +L + G++V +YE+D+
Sbjct: 8 NVAIIGGGPVGLTXAKLLQQNGIDVSVYERDN 39
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
VA+IG G GL A +L + G++V +YE+D+
Sbjct: 30 VAIIGGGPVGLTXAKLLQQNGIDVSVYERDN 60
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 628 SKGQEVLEIGCGWGTL-AIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686
++ ++L++G G G L A + K +T + +SE+ L+ A+ + + L+ ++
Sbjct: 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR-GNLK--VKYIEA 99
Query: 687 DYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732
DY + KYD ++S I + E +E + S+L E G+ +
Sbjct: 100 DYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFI 145
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMV 55
++ ++GAG SG V LA+ G +V + ++ D++GG+ ++D D + MV
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN----SYDARDSETNVMV 54
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMV 55
++ ++GAG SG V LA+ G +V + ++ D++GG+ ++D D + MV
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN----SYDARDSETNVMV 54
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDL 55
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGKIRAGVLEQGMVDL 55
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMV 55
++ ++GAG SG V LA+ G +V + ++ D++GG+ ++D D + MV
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN----SYDARDSETNVMV 54
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK--DDYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERRTPDYVLGRIRAGVLEQGMVDL 55
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
VA+IG G GL A +L + G++V +YE+D+
Sbjct: 28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
VA+IG G GL A +L + G++V +YE+D+
Sbjct: 28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK--DDYLGGHAKTVTFDGVDLDL 51
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + + +DL
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERTTPDYVLGRIRAGVLEQGMVDL 55
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
VA+IG G GL A +L + G++V +YE+D+
Sbjct: 8 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 39
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
VA+IG G GL A +L + G++V +YE+D+
Sbjct: 28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD--DYLGGHAKTVTFDGVDLDLGFMVFNRV 59
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + G L+ G
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIR-----GGVLEQG------- 51
Query: 60 TYPNMMEFFESLGVDMEMS 78
M++ GVD M+
Sbjct: 52 ----MVDLLREAGVDRRMA 66
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFM----VFNR 58
V VIG+G G V+A A+ G + V EK++ LGG L++G + + N
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTC---------LNVGCIPSKALLNN 59
Query: 59 VTYPNMM--EFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNV-LNPY 114
Y +M + F S G++M ++ +E+ G++ LF Q K V +N Y
Sbjct: 60 SHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY 118
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFM----VFNR 58
V VIG+G G V+A A+ G + V EK++ LGG L++G + + N
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTC---------LNVGCIPSKALLNN 59
Query: 59 VTYPNMMEF--FESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNV-LNPY 114
Y +M F S G++M ++ +E+ G++ LF Q K V +N Y
Sbjct: 60 SHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY 118
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFM----VFNR 58
V VIG+G G V+A A+ G + V EK++ LGG L++G + + N
Sbjct: 30 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTC---------LNVGCIPSKALLNN 80
Query: 59 VTYPNMM--EFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNV-LNPY 114
Y +M + F S G++M ++ +E+ G++ LF Q K V +N Y
Sbjct: 81 SHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY 139
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 631 QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ 690
+ VL+ G G + I G K GI +S+ QLK AE +E + + + D R+
Sbjct: 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDIRK 82
Query: 691 LA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE 745
L K + S I ++E + +L GL + F++ DERYN+
Sbjct: 83 LPFKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 605 SEDEDLKAAQMRKV--SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLS 661
SE E L+ ++ + LL G +VLE GCG G + + K + T I +S
Sbjct: 11 SEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDIS 70
Query: 662 EEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707
E L+ A ++ G++++ L + + + +D I C ++E
Sbjct: 71 PESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE 116
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
RV V+GAG SGL +A L G +VVL E LGG
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR 429
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK---DDYLG 36
+VA+IGAG SGL+ +L KAG++ V+ E+ D+ LG
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDEVLG 41
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 3 VAVIGAGISGLVSAYVLAKA------GVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
V +IG GI+GL +A+ + K +E+ L E +GG +TV DG ++ G
Sbjct: 8 VVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERG 63
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
K + VL++GCG G L+ + G + + ++AE+ VK L D I +
Sbjct: 41 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 99
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729
+++ + D IIS M + +E M E + + L G
Sbjct: 100 EEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSG 140
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
K + VL++GCG G L+ + G + + ++AE+ VK L D I +
Sbjct: 50 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 108
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729
+++ + D IIS M + +E M E + + L G
Sbjct: 109 EEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSG 149
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
K + VL++GCG G L+ + G + + ++AE+ VK L D I +
Sbjct: 45 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 103
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729
+++ + D IIS M + +E M E + + L G
Sbjct: 104 EEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSG 144
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFN 57
+A+IG GI+GL +A L AG +V L++K GG + D LD G F
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRXSSKRSDAGALDXGAQYFT 59
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
K + VL++GCG G L+ + G + + ++AE+ VK L D I +
Sbjct: 46 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 104
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729
+++ + D IIS M + +E M E + + L G
Sbjct: 105 EEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSG 145
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
Length = 545
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLD 50
+ VIGAG++G+ A+++ +AG++V+ E + +GG + G LD
Sbjct: 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLD 59
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYE 30
M+ VIGAGI GL +A L ++G++ +YE
Sbjct: 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYE 53
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
K + VL++GCG G L+ + G + + ++AE+ VK L D I +
Sbjct: 158 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 216
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729
+++ + D IIS M + +E M E + + L G
Sbjct: 217 EEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSG 257
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 2 RVAVIGAGISGLVSAYVL--AKAGVEVVLYEKDDYLGG 37
++A+IGAG SGLV+A L KA +V L+E+ GG
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 2 RVAVIGAGISGLVSAYVL--AKAGVEVVLYEKDDYLGG 37
++A+IGAG SGLV+A L KA +V L+E+ GG
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 47
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDL 49
++G+G+ G V A L K +V++ EK +++GG+A T +G+ +
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQI 50
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDL 51
V V+G G +GL SA+ L KAG +V + E GG T + DL
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDL 62
>pdb|1Y8C|A Chain A, Crystal Structure Of A S-Adenosylmethionine-Dependent
Methyltransferase From Clostridium Acetobutylicum Atcc
824
Length = 246
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 632 EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691
+ L++ CG G L + + + + LS+E L AE K + GL+ RL D L
Sbjct: 40 DYLDLACGTGNLTENLCPKFKNTW-AVDLSQEXLSEAENKFRSQGLKP--RLACQDISNL 96
Query: 692 AKANKYDRIISC--EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
K+D I C + + ++++F + L E G+ + S
Sbjct: 97 NINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 2 RVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDDYLGGHAKT------VTFDGVDLDLGFM 54
++A++GAG + + A LA+ G ++ ++EK +Y+GG + + + +D V+ ++ M
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 248
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 604 KSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKY 655
+ E + ++R VS I K ++K V+++GCG G +EI KR CK+
Sbjct: 12 RREGVPITKEEIRAVS--IGKLNLNKDDVVVDVGCGSGGXTVEIAKR--CKF 59
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 2 RVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDDYLGGHAKT------VTFDGVDLDLGFM 54
++A++GAG + + A LA+ G ++ ++EK +Y+GG + + + +D V+ ++ M
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 248
>pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes
At Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0P|A Chain A, D-amino Acic Oxidase In Complex With D-alanine And A
Partially Occupied Biatomic Species
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex
With Two Anthranylate Molecules
Length = 363
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32
RV V+G+G+ GL SA +LA+ G V + +D
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILARD 38
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
++GAG +G V A LA +G V++ ++ ++GG+A
Sbjct: 34 IVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNA 68
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEK 31
V V+GAG+ GL +A LA+ GV V++ E+
Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVVER 36
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT 43
V ++GAG SG +A VL ++G V L + + +GGH V
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA 432
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT 43
V ++GAG SG +A VL ++G V L + + +GGH V
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA 432
>pdb|3OSJ|A Chain A, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
pdb|3OSJ|B Chain B, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
pdb|3OSJ|C Chain C, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
pdb|3OSJ|D Chain D, X-Ray Structure Of Phycobilisome Lcm Core-Membrane Linker
Polypeptide (Fragment 254-400) From Synechocystis Sp.
Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr209c
Length = 147
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 93 EWGSRNGLSSLFAQKKNVLNPYFWQML-REIIKFKDDVLGYLEELESNPDIDRSETLGQF 151
++ + GLS+L +K V+ + Q+ R+I K + YLE N DI E F
Sbjct: 13 KYAXKPGLSAL--EKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISXKE----F 66
Query: 152 VNSRGYSELFQKAYLIPICGS 172
V S L++K + P S
Sbjct: 67 VRRLAKSPLYRKQFFEPFINS 87
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
+V V+GAG +G ++ KAG V+L +K + GG++
Sbjct: 123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS 160
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31
+VA+IG G +G V+ L K G +V +YE+
Sbjct: 25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYER 54
>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPH|H Chain H, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPI|G Chain G, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPI|H Chain H, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPJ|G Chain G, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 451
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF 44
V V+G GI+ + + +L+ G +V+ +K D+ GG A +VT
Sbjct: 12 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL 53
>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|2BCG|G Chain G, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 453
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF 44
V V+G GI+ + + +L+ G +V+ +K D+ GG A +VT
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL 55
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In
Complex With Tetrahydrofolate
Length = 443
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYE 30
RV V+GAG++G +A+ L + GV V L+E
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In
Complex With Glutathione
Length = 443
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYE 30
RV V+GAG++G +A+ L + GV V L+E
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31
>pdb|2L06|A Chain A, Solution Nmr Structure Of The Pbs Linker Polypeptide
Domain (Fragment 254-400) Of Phycobilisome Linker
Protein Apce From Synechocystis Sp. Pcc 6803. Northeast
Structural Genomics Consortium Target Sgr209c
Length = 155
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 93 EWGSRNGLSSLFAQKKNVLNPYFWQML-REIIKFKDDVLGYLEELESNPDIDRSETLGQF 151
++ + GLS+L +K V+ + Q+ R+I K + YLE N DI ++ +F
Sbjct: 13 KYAMKPGLSAL--EKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDI----SMKEF 66
Query: 152 VNSRGYSELFQKAYLIPICGS 172
V S L++K + P S
Sbjct: 67 VRRLAKSPLYRKQFFEPFINS 87
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLG-GHAKTV 42
M+V ++G+G+ G +AY LA GV EVVL + D L HA+ +
Sbjct: 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDI 45
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLG-GHAKTV 42
M+V ++G+G+ G +AY LA GV EVVL + D L HA+ +
Sbjct: 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDI 45
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLG-GHAKTV 42
M+V ++G+G+ G +AY LA GV EVVL + D L HA+ +
Sbjct: 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDI 45
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCK--YTGITLS 661
+ E +V G+++LEIGCG G L+ + + G TGI ++
Sbjct: 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIA 77
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad And Uric Acid
Length = 407
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYE 30
+ VIGAGI GL +A L ++G++ +YE
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYE 53
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 631 QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
+EVL+IGC G L I K G + +GI E + A+ K+ L D+
Sbjct: 34 KEVLDIGCSSGALGAAI-KENGTRVSGIEAFPEAAEQAKEKLDHVVLGDI 82
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40
V V+G G SGL +A LA+AG++V++ + GG +K
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLD-----GGRSK 36
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
+ + + K + VL++GCG G L++ K K G+ SE + Y M D
Sbjct: 55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE--ILYQAM--------D 104
Query: 680 LIRL-YLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLL 725
+IRL L D L K + + E ++ + E+M +F ES+L
Sbjct: 105 IIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM-GYFLLFESML 150
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 595 SMTYSCAVFKSED---EDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT 651
S Y V S D E ++Q ++L +E + KG VLEIG G G A + +
Sbjct: 38 SYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVV 97
Query: 652 GCK--YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAV 709
G K + S + + A+ V+ G++++I + Y + + + YD I ++ V
Sbjct: 98 GEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEV 157
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
V V+GAG G+ + Y LAK GV+ +L + D
Sbjct: 6 VIVVGAGSMGMAAGYYLAKQGVKTLLVDSFD 36
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
V V+GAG G+ + Y LAK GV+ +L + D
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
Length = 389
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
V V+GAG G+ + Y LAK GV+ +L + D
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
VIGAG G V+A A+ G++V + EK+ LGG
Sbjct: 6 VIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGG 38
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 144 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
V V+GAG G+ + Y LAK GV+ +L + D
Sbjct: 7 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 37
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
Length = 389
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
V V+GAG G+ + Y LAK GV+ +L + D
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
V V+GAG G+ + Y LAK GV+ +L + D
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36
>pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sah
pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
Dependent Methyltransferase, Complexed With Sam
Length = 301
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 652 GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ 690
GC+ GI + E L+ AE K+KE D + L+ YR+
Sbjct: 50 GCRIIGIDVDSEVLRIAEEKLKE--FSDRVSLFKVSYRE 86
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 613 AQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV 672
A+ +++L + G +VL++G G G LAI ++ G K G+ + L AE
Sbjct: 104 AETTRLALKALARHLRPGDKVLDLGTGSGVLAIA-AEKLGGKALGVDIDPMVLPQAEANA 162
Query: 673 KEAGLQ 678
K G++
Sbjct: 163 KRNGVR 168
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 219
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 154 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 211
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 144 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYT-GITLSEEQLKYAEMKVKE 674
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 153 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 210
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 631 QEVLEIGCGWGTLAIEIVKRTG------CKYTGITLSEEQLKYAEMKVKEAGLQD----L 680
++VL IG G G E++K C+ G+ + E KY +K G D +
Sbjct: 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVI-EAARKY--LKQTSCGFDDPRAEI 148
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVG---HEFMEEFFGCCESLLAEDGLL 731
+ +Y + K N++D II G H F EEF+ C L EDG+
Sbjct: 149 VIANGAEYVRKFK-NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVF 201
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34
V VIGAG +G V+A ++ K+G +V + EK +
Sbjct: 8 VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF 39
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
Length = 519
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 12 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 56
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 12 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 56
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
Length = 520
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 633 VLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV 672
VL++GCG+G I + K GI LSE L A+ K
Sbjct: 48 VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT 87
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 9 GISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLG 52
GISG+ +A +L +G+ VV+ E D +GG T+ V +DLG
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,501,710
Number of Sequences: 62578
Number of extensions: 1077377
Number of successful extensions: 2831
Number of sequences better than 100.0: 203
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2658
Number of HSP's gapped (non-prelim): 216
length of query: 842
length of database: 14,973,337
effective HSP length: 107
effective length of query: 735
effective length of database: 8,277,491
effective search space: 6083955885
effective search space used: 6083955885
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)