Query 035870
Match_columns 842
No_of_seqs 709 out of 6279
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2230 Cfa Cyclopropane fatty 100.0 2.2E-62 4.8E-67 489.2 26.9 274 562-842 5-278 (283)
2 PRK11705 cyclopropane fatty ac 100.0 5.8E-60 1.3E-64 510.6 37.6 333 477-842 35-367 (383)
3 PF02353 CMAS: Mycolic acid cy 100.0 2.7E-61 5.9E-66 494.7 24.8 271 568-842 1-272 (273)
4 COG2907 Predicted NAD/FAD-bind 100.0 8.3E-54 1.8E-58 423.0 31.9 409 1-422 9-426 (447)
5 COG1232 HemY Protoporphyrinoge 100.0 3.2E-35 6.9E-40 316.8 29.4 394 1-417 1-443 (444)
6 TIGR00562 proto_IX_ox protopor 100.0 1.7E-34 3.6E-39 328.6 34.2 395 1-418 3-458 (462)
7 PRK12416 protoporphyrinogen ox 100.0 1.6E-34 3.5E-39 328.0 32.5 402 1-418 2-459 (463)
8 PRK11883 protoporphyrinogen ox 100.0 1.5E-33 3.3E-38 320.4 32.9 402 1-418 1-450 (451)
9 PLN02576 protoporphyrinogen ox 100.0 5.1E-33 1.1E-37 318.8 33.2 397 1-419 13-486 (496)
10 PLN02268 probable polyamine ox 100.0 2.7E-32 5.8E-37 307.4 27.2 383 1-418 1-432 (435)
11 PLN02612 phytoene desaturase 100.0 9.7E-32 2.1E-36 308.1 29.5 413 1-420 94-548 (567)
12 PRK07233 hypothetical protein; 100.0 1.2E-31 2.7E-36 303.2 29.5 395 2-419 1-430 (434)
13 PRK07208 hypothetical protein; 100.0 2.3E-31 5E-36 303.8 31.6 401 1-420 5-461 (479)
14 PLN02487 zeta-carotene desatur 100.0 1.3E-31 2.8E-36 302.3 28.5 413 1-420 76-553 (569)
15 TIGR02732 zeta_caro_desat caro 100.0 1.5E-31 3.3E-36 301.0 28.8 407 2-417 1-474 (474)
16 TIGR02731 phytoene_desat phyto 100.0 5.8E-31 1.3E-35 298.0 29.1 406 2-417 1-453 (453)
17 PLN02529 lysine-specific histo 100.0 7E-30 1.5E-34 293.3 33.5 385 1-419 161-597 (738)
18 PLN02568 polyamine oxidase 100.0 2E-29 4.3E-34 285.2 28.1 294 1-309 6-342 (539)
19 PLN02328 lysine-specific histo 100.0 8.2E-29 1.8E-33 285.3 31.4 386 1-419 239-678 (808)
20 KOG1276 Protoporphyrinogen oxi 100.0 4.2E-29 9E-34 255.6 25.0 400 1-417 12-490 (491)
21 PLN03000 amine oxidase 100.0 8.9E-28 1.9E-32 275.9 35.4 385 1-420 185-623 (881)
22 PLN02676 polyamine oxidase 100.0 1.2E-28 2.6E-33 277.5 26.6 388 1-419 27-472 (487)
23 COG1231 Monoamine oxidase [Ami 100.0 1.9E-28 4.2E-33 256.6 22.4 394 1-418 8-445 (450)
24 TIGR03467 HpnE squalene-associ 100.0 4.7E-28 1E-32 272.8 27.4 385 14-418 1-419 (419)
25 KOG0685 Flavin-containing amin 100.0 2.3E-28 4.9E-33 255.0 20.6 391 2-418 23-489 (498)
26 PLN02976 amine oxidase 100.0 9.3E-27 2E-31 272.7 28.1 383 1-419 694-1185(1713)
27 TIGR02733 desat_CrtD C-3',4' d 100.0 4.7E-26 1E-30 260.4 32.2 294 1-305 2-331 (492)
28 smart00828 PKS_MT Methyltransf 99.9 5.9E-27 1.3E-31 238.9 19.5 196 631-842 1-197 (224)
29 KOG0029 Amine oxidase [Seconda 99.9 1.8E-26 3.9E-31 255.9 22.0 383 1-419 16-458 (501)
30 TIGR02734 crtI_fam phytoene de 99.9 3.5E-25 7.5E-30 254.1 29.9 285 3-303 1-312 (502)
31 COG3380 Predicted NAD/FAD-depe 99.9 7.1E-27 1.5E-31 225.1 9.7 296 2-418 3-329 (331)
32 PLN02244 tocopherol O-methyltr 99.9 1.4E-24 3E-29 233.2 28.5 222 568-796 52-288 (340)
33 PF01593 Amino_oxidase: Flavin 99.9 2.1E-26 4.5E-31 261.4 13.0 397 10-417 1-450 (450)
34 TIGR02730 carot_isom carotene 99.9 9.2E-24 2E-28 241.0 29.0 293 2-308 2-327 (493)
35 COG3349 Uncharacterized conser 99.9 7.5E-23 1.6E-27 219.3 21.1 403 1-420 1-463 (485)
36 COG2226 UbiE Methylase involve 99.9 7.7E-23 1.7E-27 202.3 17.4 193 569-787 12-225 (238)
37 COG1233 Phytoene dehydrogenase 99.9 8.1E-21 1.8E-25 214.6 24.3 259 1-277 4-287 (487)
38 PF01209 Ubie_methyltran: ubiE 99.9 3.3E-22 7.2E-27 201.3 11.5 150 569-742 8-160 (233)
39 PTZ00098 phosphoethanolamine N 99.9 2.5E-20 5.4E-25 192.9 25.1 208 618-835 41-254 (263)
40 PLN02336 phosphoethanolamine N 99.9 7.9E-20 1.7E-24 207.6 25.2 192 618-821 255-448 (475)
41 PLN02233 ubiquinone biosynthes 99.8 9.3E-20 2E-24 188.5 18.1 163 621-788 65-250 (261)
42 PLN02396 hexaprenyldihydroxybe 99.8 1.8E-19 4E-24 189.3 15.7 165 628-798 130-299 (322)
43 KOG1540 Ubiquinone biosynthesi 99.8 6.7E-19 1.5E-23 168.8 15.3 147 571-740 63-219 (296)
44 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.5E-19 3.3E-24 174.4 10.3 158 628-794 58-221 (243)
45 TIGR02752 MenG_heptapren 2-hep 99.8 1.3E-18 2.7E-23 178.5 17.1 191 571-788 8-220 (231)
46 TIGR00031 UDP-GALP_mutase UDP- 99.8 3.4E-17 7.4E-22 176.0 24.9 363 1-417 2-376 (377)
47 PRK11036 putative S-adenosyl-L 99.8 1.2E-17 2.6E-22 173.2 20.0 168 615-788 31-209 (255)
48 KOG1270 Methyltransferases [Co 99.8 2.2E-18 4.8E-23 166.8 9.5 151 630-786 90-249 (282)
49 PTZ00363 rab-GDP dissociation 99.7 1.3E-16 2.9E-21 175.8 22.7 251 2-267 6-286 (443)
50 PRK14103 trans-aconitate 2-met 99.7 4.9E-17 1.1E-21 168.8 16.7 162 614-786 14-184 (255)
51 TIGR00452 methyltransferase, p 99.7 2E-16 4.4E-21 165.5 20.5 183 612-799 104-288 (314)
52 PRK11207 tellurite resistance 99.7 1.5E-16 3.3E-21 157.6 18.4 150 620-786 21-170 (197)
53 PRK15068 tRNA mo(5)U34 methylt 99.7 2.3E-16 5.1E-21 167.5 19.7 169 615-789 108-277 (322)
54 PF12847 Methyltransf_18: Meth 99.7 8.5E-17 1.8E-21 144.7 13.7 107 629-735 1-111 (112)
55 PRK01683 trans-aconitate 2-met 99.7 2E-16 4.4E-21 164.9 16.0 166 611-785 13-186 (258)
56 PLN02490 MPBQ/MSBQ methyltrans 99.7 3.1E-16 6.8E-21 165.1 16.6 158 620-793 103-263 (340)
57 TIGR00477 tehB tellurite resis 99.7 1.1E-15 2.4E-20 151.1 17.5 149 620-786 21-169 (195)
58 KOG4254 Phytoene desaturase [C 99.7 1.9E-15 4.1E-20 156.4 19.1 82 203-284 252-335 (561)
59 PRK10258 biotin biosynthesis p 99.7 1.4E-15 3.1E-20 157.7 17.6 164 613-791 26-191 (251)
60 PRK13977 myosin-cross-reactive 99.7 3.3E-15 7.2E-20 165.6 21.4 243 1-271 23-293 (576)
61 PRK00216 ubiE ubiquinone/menaq 99.7 2.2E-15 4.7E-20 155.7 18.1 167 618-789 40-228 (239)
62 TIGR03329 Phn_aa_oxid putative 99.7 2.5E-15 5.5E-20 170.0 20.1 190 214-420 182-395 (460)
63 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.3E-15 2.8E-20 156.8 15.6 111 627-738 54-167 (247)
64 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 2E-15 4.3E-20 154.2 16.7 189 572-789 3-213 (223)
65 PF08241 Methyltransf_11: Meth 99.7 5.4E-16 1.2E-20 134.8 10.2 94 634-733 1-95 (95)
66 PRK07580 Mg-protoporphyrin IX 99.7 3.4E-15 7.4E-20 153.1 17.7 163 627-800 61-229 (230)
67 PRK05785 hypothetical protein; 99.7 1.3E-15 2.8E-20 153.9 14.1 139 570-740 11-150 (226)
68 PRK11873 arsM arsenite S-adeno 99.6 3E-15 6.6E-20 157.2 17.4 156 625-787 73-231 (272)
69 PF13847 Methyltransf_31: Meth 99.6 1.8E-15 3.9E-20 143.9 13.3 107 628-737 2-112 (152)
70 TIGR02021 BchM-ChlM magnesium 99.6 5E-15 1.1E-19 150.2 16.8 167 616-793 40-213 (219)
71 TIGR00740 methyltransferase, p 99.6 3.4E-15 7.4E-20 153.5 15.4 111 628-739 52-165 (239)
72 PF03848 TehB: Tellurite resis 99.6 1.4E-14 3E-19 139.1 17.5 147 620-784 21-167 (192)
73 PF13489 Methyltransf_23: Meth 99.6 3.3E-15 7.1E-20 144.1 12.4 137 627-783 20-160 (161)
74 PRK12335 tellurite resistance 99.6 2.6E-14 5.7E-19 150.6 19.2 139 629-785 120-258 (287)
75 TIGR02716 C20_methyl_CrtF C-20 99.6 1.9E-14 4E-19 153.7 18.2 158 619-783 139-303 (306)
76 PRK00107 gidB 16S rRNA methylt 99.6 2.4E-14 5.1E-19 139.1 17.0 102 627-735 43-145 (187)
77 PLN02585 magnesium protoporphy 99.6 1.3E-14 2.8E-19 152.3 16.1 148 629-789 144-302 (315)
78 PRK08317 hypothetical protein; 99.6 7.6E-14 1.7E-18 144.3 20.9 165 619-788 9-178 (241)
79 PRK00711 D-amino acid dehydrog 99.6 9.7E-14 2.1E-18 155.9 22.8 195 214-422 200-405 (416)
80 PF13450 NAD_binding_8: NAD(P) 99.6 3.4E-15 7.4E-20 119.0 7.5 67 5-71 1-68 (68)
81 TIGR03840 TMPT_Se_Te thiopurin 99.6 7.9E-14 1.7E-18 138.8 18.8 148 621-788 26-189 (213)
82 COG4106 Tam Trans-aconitate me 99.6 1.5E-14 3.2E-19 135.6 12.4 163 615-786 16-186 (257)
83 PRK05134 bifunctional 3-demeth 99.6 5.9E-14 1.3E-18 144.0 18.0 178 615-800 34-217 (233)
84 PF13649 Methyltransf_25: Meth 99.6 7.5E-15 1.6E-19 128.9 9.0 95 633-729 1-101 (101)
85 TIGR02469 CbiT precorrin-6Y C5 99.6 5.8E-14 1.3E-18 128.7 15.4 115 616-736 6-123 (124)
86 TIGR00138 gidB 16S rRNA methyl 99.6 8.4E-14 1.8E-18 135.2 16.4 99 629-734 42-141 (181)
87 PF05175 MTS: Methyltransferas 99.6 2.6E-14 5.7E-19 138.1 12.1 129 599-734 7-139 (170)
88 PF05401 NodS: Nodulation prot 99.6 2.4E-14 5.2E-19 134.8 11.1 118 615-736 28-147 (201)
89 PRK13255 thiopurine S-methyltr 99.5 2.8E-13 6.1E-18 135.3 18.5 148 621-788 29-192 (218)
90 PF08003 Methyltransf_9: Prote 99.5 2.7E-13 5.8E-18 136.3 17.2 166 617-788 103-269 (315)
91 KOG1271 Methyltransferases [Ge 99.5 1.1E-13 2.4E-18 125.8 12.6 127 612-738 46-184 (227)
92 TIGR01377 soxA_mon sarcosine o 99.5 2.6E-13 5.7E-18 150.6 18.4 57 214-271 144-200 (380)
93 PRK13944 protein-L-isoaspartat 99.5 1.5E-13 3.2E-18 137.1 14.3 111 617-735 60-173 (205)
94 TIGR01983 UbiG ubiquinone bios 99.5 4.3E-13 9.4E-18 136.8 17.9 155 629-788 45-205 (224)
95 TIGR00080 pimt protein-L-isoas 99.5 1.3E-13 2.9E-18 138.9 13.5 140 616-765 64-207 (215)
96 PRK08287 cobalt-precorrin-6Y C 99.5 5.1E-13 1.1E-17 131.7 17.3 111 619-736 21-132 (187)
97 PRK15001 SAM-dependent 23S rib 99.5 2.2E-13 4.8E-18 145.8 15.8 131 599-735 204-340 (378)
98 TIGR00537 hemK_rel_arch HemK-r 99.5 4.5E-13 9.7E-18 131.1 16.8 138 621-788 11-167 (179)
99 PF01266 DAO: FAD dependent ox 99.5 1.5E-14 3.2E-19 159.3 7.0 70 206-277 135-208 (358)
100 TIGR02072 BioC biotin biosynth 99.5 2.7E-13 5.8E-18 140.2 15.1 156 613-785 15-175 (240)
101 TIGR03587 Pse_Me-ase pseudamin 99.5 2.9E-13 6.2E-18 134.2 14.5 122 608-739 24-146 (204)
102 PRK11259 solA N-methyltryptoph 99.5 3.9E-13 8.5E-18 148.9 16.9 189 214-421 148-362 (376)
103 PF08242 Methyltransf_12: Meth 99.5 3.3E-15 7.1E-20 130.8 0.1 95 634-731 1-99 (99)
104 PRK00377 cbiT cobalt-precorrin 99.5 7.4E-13 1.6E-17 131.6 17.0 112 620-736 31-146 (198)
105 KOG4300 Predicted methyltransf 99.5 1.6E-13 3.4E-18 127.7 10.8 108 628-738 75-185 (252)
106 COG2081 Predicted flavoprotein 99.5 1.1E-12 2.4E-17 136.3 18.3 64 205-268 101-164 (408)
107 PRK00517 prmA ribosomal protei 99.5 5.4E-13 1.2E-17 137.6 15.9 156 585-788 85-240 (250)
108 PRK06202 hypothetical protein; 99.5 2.2E-13 4.7E-18 139.4 12.9 154 627-788 58-224 (232)
109 PRK06922 hypothetical protein; 99.5 2.9E-13 6.3E-18 150.6 13.9 112 626-739 415-541 (677)
110 PRK12409 D-amino acid dehydrog 99.5 5.5E-13 1.2E-17 149.4 16.4 66 206-271 185-258 (410)
111 TIGR01373 soxB sarcosine oxida 99.5 1.4E-12 3.1E-17 145.9 19.5 188 215-420 183-386 (407)
112 COG2813 RsmC 16S RNA G1207 met 99.5 1E-12 2.2E-17 132.7 16.2 132 596-736 131-267 (300)
113 smart00138 MeTrc Methyltransfe 99.5 3.7E-13 8.1E-18 139.2 13.5 133 602-734 72-241 (264)
114 COG2264 PrmA Ribosomal protein 99.5 7.8E-13 1.7E-17 134.6 15.2 159 589-788 132-290 (300)
115 PRK01747 mnmC bifunctional tRN 99.5 1.5E-12 3.2E-17 154.0 20.1 65 206-271 396-463 (662)
116 PRK13942 protein-L-isoaspartat 99.5 5.2E-13 1.1E-17 133.8 13.4 112 615-735 62-176 (212)
117 COG4123 Predicted O-methyltran 99.5 5.7E-13 1.2E-17 132.0 13.3 114 621-734 36-169 (248)
118 TIGR00406 prmA ribosomal prote 99.5 1.5E-12 3.3E-17 136.8 17.0 134 587-736 127-260 (288)
119 COG2242 CobL Precorrin-6B meth 99.5 3.4E-12 7.3E-17 119.5 16.8 114 619-739 24-139 (187)
120 PRK14967 putative methyltransf 99.4 4.4E-12 9.6E-17 128.7 19.2 146 618-791 25-189 (223)
121 COG0562 Glf UDP-galactopyranos 99.4 8.6E-12 1.9E-16 124.6 20.5 237 2-273 3-243 (374)
122 COG4976 Predicted methyltransf 99.4 7.6E-14 1.7E-18 131.7 5.2 180 574-787 84-266 (287)
123 PLN02336 phosphoethanolamine N 99.4 7.8E-13 1.7E-17 150.5 14.6 117 618-738 26-145 (475)
124 PRK04266 fibrillarin; Provisio 99.4 2.3E-12 5.1E-17 129.2 15.5 142 624-789 67-213 (226)
125 PRK00121 trmB tRNA (guanine-N( 99.4 8.5E-13 1.8E-17 131.3 11.5 106 629-735 40-156 (202)
126 COG2518 Pcm Protein-L-isoaspar 99.4 2.3E-12 4.9E-17 123.7 13.7 111 616-736 59-170 (209)
127 COG0665 DadA Glycine/D-amino a 99.4 1.4E-12 3E-17 145.3 14.4 198 214-425 155-373 (387)
128 TIGR01177 conserved hypothetic 99.4 1.3E-12 2.7E-17 140.6 13.2 115 619-735 172-294 (329)
129 PLN03075 nicotianamine synthas 99.4 1.8E-12 3.9E-17 132.7 13.6 109 626-735 120-233 (296)
130 PRK09489 rsmC 16S ribosomal RN 99.4 3.2E-12 6.9E-17 136.5 15.6 128 599-735 172-303 (342)
131 PF07021 MetW: Methionine bios 99.4 6.8E-12 1.5E-16 118.4 15.0 151 627-791 11-172 (193)
132 TIGR02081 metW methionine bios 99.4 2.8E-12 6.1E-17 127.2 12.9 153 619-787 5-168 (194)
133 PF06325 PrmA: Ribosomal prote 99.4 3.5E-12 7.6E-17 131.9 13.8 159 586-789 128-286 (295)
134 PF13659 Methyltransf_26: Meth 99.4 1.7E-12 3.6E-17 117.6 9.9 106 630-735 1-115 (117)
135 TIGR03533 L3_gln_methyl protei 99.4 8.1E-12 1.7E-16 130.7 16.0 108 628-735 120-251 (284)
136 PRK14968 putative methyltransf 99.4 1.6E-11 3.6E-16 121.5 17.0 114 621-735 15-148 (188)
137 PRK07402 precorrin-6B methylas 99.4 1.4E-11 3E-16 122.5 15.0 111 619-736 30-143 (196)
138 TIGR00091 tRNA (guanine-N(7)-) 99.3 3.3E-12 7.1E-17 126.4 10.4 106 629-735 16-132 (194)
139 PRK00312 pcm protein-L-isoaspa 99.3 8E-12 1.7E-16 125.9 13.4 110 617-736 66-176 (212)
140 PRK11805 N5-glutamine S-adenos 99.3 1.6E-11 3.6E-16 129.5 15.2 105 630-734 134-262 (307)
141 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.3E-11 2.8E-16 131.3 13.5 116 620-736 113-236 (390)
142 PF03486 HI0933_like: HI0933-l 99.3 4.5E-12 9.7E-17 138.6 9.9 63 207-269 101-164 (409)
143 PF01135 PCMT: Protein-L-isoas 99.3 9.4E-12 2E-16 122.8 11.2 113 615-736 58-173 (209)
144 PTZ00146 fibrillarin; Provisio 99.3 5.3E-11 1.1E-15 121.4 16.4 139 623-789 126-274 (293)
145 TIGR03438 probable methyltrans 99.3 2.8E-11 6E-16 128.2 15.0 116 619-736 55-178 (301)
146 KOG1541 Predicted protein carb 99.3 1.7E-11 3.7E-16 115.4 11.6 122 609-737 28-162 (270)
147 PRK13256 thiopurine S-methyltr 99.3 8.3E-11 1.8E-15 116.6 17.1 114 623-737 37-165 (226)
148 PLN02232 ubiquinone biosynthes 99.3 9.3E-12 2E-16 118.8 10.0 129 656-788 1-149 (160)
149 COG2519 GCD14 tRNA(1-methylade 99.3 3.7E-11 8.1E-16 117.7 13.8 110 619-735 84-195 (256)
150 PF05724 TPMT: Thiopurine S-me 99.3 2E-11 4.4E-16 121.6 12.1 151 619-786 27-190 (218)
151 TIGR00536 hemK_fam HemK family 99.3 4.4E-11 9.6E-16 125.8 15.2 107 629-735 114-244 (284)
152 COG1635 THI4 Ribulose 1,5-bisp 99.3 5.5E-11 1.2E-15 112.6 13.2 68 1-78 31-99 (262)
153 PRK11088 rrmA 23S rRNA methylt 99.3 2.9E-11 6.2E-16 126.7 12.2 94 628-736 84-182 (272)
154 PRK13943 protein-L-isoaspartat 99.3 5.3E-11 1.2E-15 125.3 13.6 111 616-735 67-180 (322)
155 PRK10157 putative oxidoreducta 99.3 9.5E-11 2.1E-15 131.1 16.3 55 216-270 109-163 (428)
156 PRK11188 rrmJ 23S rRNA methylt 99.2 5.5E-11 1.2E-15 118.6 12.0 109 617-737 38-167 (209)
157 PHA03411 putative methyltransf 99.2 2.6E-10 5.7E-15 114.9 15.8 101 628-734 63-182 (279)
158 PRK10901 16S rRNA methyltransf 99.2 2.2E-10 4.8E-15 127.5 17.0 119 619-739 234-376 (427)
159 TIGR03534 RF_mod_PrmC protein- 99.2 1.6E-10 3.4E-15 120.2 14.9 116 617-734 76-216 (251)
160 PRK14966 unknown domain/N5-glu 99.2 1.5E-10 3.2E-15 123.9 14.6 105 628-734 250-380 (423)
161 PRK09328 N5-glutamine S-adenos 99.2 2.3E-10 5E-15 120.7 15.1 114 620-734 99-237 (275)
162 PRK01544 bifunctional N5-gluta 99.2 1.3E-10 2.9E-15 131.1 14.1 106 629-734 138-268 (506)
163 PRK14903 16S rRNA methyltransf 99.2 2.7E-10 5.8E-15 126.3 16.2 120 620-740 228-371 (431)
164 PRK11728 hydroxyglutarate oxid 99.2 2.5E-10 5.5E-15 126.9 15.8 57 214-271 148-204 (393)
165 COG0644 FixC Dehydrogenases (f 99.2 1.2E-09 2.5E-14 121.4 20.9 53 216-268 96-149 (396)
166 COG0579 Predicted dehydrogenas 99.2 3.1E-10 6.8E-15 122.6 15.6 58 214-271 152-211 (429)
167 KOG2361 Predicted methyltransf 99.2 6.8E-11 1.5E-15 113.6 9.2 152 632-786 74-237 (264)
168 PRK14904 16S rRNA methyltransf 99.2 1.8E-10 3.9E-15 129.0 14.1 120 620-740 241-382 (445)
169 smart00650 rADc Ribosomal RNA 99.2 1.5E-10 3.2E-15 112.1 11.6 110 619-735 3-113 (169)
170 PRK14901 16S rRNA methyltransf 99.2 3.6E-10 7.7E-15 126.2 15.8 120 619-739 242-388 (434)
171 TIGR02032 GG-red-SF geranylger 99.2 1.4E-09 3E-14 116.2 19.7 55 216-270 92-147 (295)
172 PRK04457 spermidine synthase; 99.2 1.8E-10 4E-15 118.9 11.8 111 628-738 65-180 (262)
173 PLN02781 Probable caffeoyl-CoA 99.2 2.4E-10 5.3E-15 116.0 12.3 106 627-737 66-180 (234)
174 TIGR00446 nop2p NOL1/NOP2/sun 99.2 3.6E-10 7.9E-15 117.3 13.8 117 623-740 65-204 (264)
175 TIGR00563 rsmB ribosomal RNA s 99.2 2.5E-10 5.3E-15 127.2 13.4 122 619-740 228-373 (426)
176 PF06080 DUF938: Protein of un 99.1 4.8E-10 1E-14 107.7 13.0 157 630-788 26-194 (204)
177 KOG2820 FAD-dependent oxidored 99.1 6.9E-10 1.5E-14 111.8 14.2 63 215-278 153-218 (399)
178 PF08704 GCD14: tRNA methyltra 99.1 6.7E-10 1.4E-14 111.8 14.1 112 616-734 27-145 (247)
179 COG2890 HemK Methylase of poly 99.1 6.3E-10 1.4E-14 115.6 13.9 102 632-735 113-238 (280)
180 PF05891 Methyltransf_PK: AdoM 99.1 7.3E-10 1.6E-14 106.9 12.8 144 629-786 55-201 (218)
181 PRK14902 16S rRNA methyltransf 99.1 5.3E-10 1.1E-14 125.4 13.8 119 620-739 241-383 (444)
182 PRK15128 23S rRNA m(5)C1962 me 99.1 6.6E-10 1.4E-14 121.0 14.0 110 628-737 219-341 (396)
183 TIGR03704 PrmC_rel_meth putati 99.1 9.5E-10 2.1E-14 112.9 14.2 102 629-734 86-215 (251)
184 PF00891 Methyltransf_2: O-met 99.1 9.9E-10 2.1E-14 113.2 14.2 114 619-742 90-206 (241)
185 PF06100 Strep_67kDa_ant: Stre 99.1 5.7E-09 1.2E-13 112.6 19.9 234 1-269 3-272 (500)
186 cd02440 AdoMet_MTases S-adenos 99.1 7.7E-10 1.7E-14 97.4 10.8 101 632-734 1-103 (107)
187 PRK00811 spermidine synthase; 99.1 7.3E-10 1.6E-14 116.0 11.9 108 628-735 75-191 (283)
188 PF01596 Methyltransf_3: O-met 99.1 3.1E-09 6.7E-14 104.6 15.3 122 610-739 29-159 (205)
189 TIGR03364 HpnW_proposed FAD de 99.1 1.4E-09 3.1E-14 119.8 14.4 53 214-271 144-197 (365)
190 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.9E-09 4.1E-14 127.1 16.0 108 629-736 538-657 (702)
191 COG4122 Predicted O-methyltran 99.1 1.5E-09 3.3E-14 106.2 12.5 113 623-740 53-171 (219)
192 PTZ00383 malate:quinone oxidor 99.1 3.6E-09 7.8E-14 118.9 17.2 58 214-272 210-274 (497)
193 TIGR00438 rrmJ cell division p 99.0 1.6E-09 3.6E-14 106.8 11.8 104 620-735 22-146 (188)
194 PLN02476 O-methyltransferase 99.0 2.7E-09 5.9E-14 109.0 13.6 108 627-739 116-232 (278)
195 PRK06847 hypothetical protein; 99.0 4.8E-09 1E-13 116.2 16.8 55 216-270 108-162 (375)
196 PHA03412 putative methyltransf 99.0 1.3E-09 2.7E-14 107.3 10.4 96 629-730 49-158 (241)
197 KOG2904 Predicted methyltransf 99.0 4.8E-09 1E-13 102.6 14.1 113 628-740 147-290 (328)
198 KOG3010 Methyltransferase [Gen 99.0 1.2E-09 2.6E-14 105.3 9.7 102 628-733 31-135 (261)
199 TIGR00275 flavoprotein, HI0933 99.0 5.7E-09 1.2E-13 115.7 16.7 59 212-271 102-160 (400)
200 TIGR00292 thiazole biosynthesi 99.0 5.6E-09 1.2E-13 107.3 15.4 39 1-39 22-60 (254)
201 PRK10015 oxidoreductase; Provi 99.0 8.9E-09 1.9E-13 115.2 18.2 55 216-270 109-163 (429)
202 PF00996 GDI: GDP dissociation 99.0 3E-08 6.5E-13 108.2 21.5 251 2-266 6-284 (438)
203 PRK13168 rumA 23S rRNA m(5)U19 99.0 3E-09 6.5E-14 119.2 13.9 112 616-735 284-400 (443)
204 PRK10909 rsmD 16S rRNA m(2)G96 99.0 3.7E-09 8.1E-14 103.7 12.8 106 628-737 52-161 (199)
205 PRK08773 2-octaprenyl-3-methyl 99.0 6.5E-09 1.4E-13 115.7 16.4 55 216-270 114-168 (392)
206 PF01946 Thi4: Thi4 family; PD 99.0 1.9E-09 4.1E-14 103.4 10.1 39 2-40 19-57 (230)
207 PRK04176 ribulose-1,5-biphosph 99.0 7.3E-09 1.6E-13 106.8 15.1 38 2-39 27-64 (257)
208 PF05185 PRMT5: PRMT5 arginine 99.0 2.7E-09 5.9E-14 117.6 12.6 117 616-732 169-294 (448)
209 PRK07588 hypothetical protein; 99.0 5.8E-09 1.3E-13 116.1 15.3 53 216-269 104-156 (391)
210 TIGR01988 Ubi-OHases Ubiquinon 99.0 5.2E-09 1.1E-13 116.4 15.0 55 216-270 107-162 (385)
211 PLN02366 spermidine synthase 99.0 1.5E-09 3.2E-14 113.9 9.8 110 627-736 89-207 (308)
212 PRK03612 spermidine synthase; 99.0 2.5E-09 5.5E-14 121.5 12.1 109 627-735 295-415 (521)
213 PRK08163 salicylate hydroxylas 99.0 7.9E-09 1.7E-13 115.4 16.0 55 216-270 110-165 (396)
214 KOG1500 Protein arginine N-met 99.0 2E-09 4.4E-14 107.4 9.6 182 628-812 176-363 (517)
215 PRK07236 hypothetical protein; 99.0 6.4E-09 1.4E-13 115.4 14.9 60 216-277 101-162 (386)
216 PF02390 Methyltransf_4: Putat 99.0 3E-09 6.5E-14 104.4 10.7 103 632-735 20-133 (195)
217 PRK11727 23S rRNA mA1618 methy 99.0 6.1E-09 1.3E-13 109.1 13.4 83 629-711 114-204 (321)
218 TIGR01984 UbiH 2-polyprenyl-6- 99.0 1E-08 2.3E-13 113.8 16.2 63 215-277 105-169 (382)
219 PRK01581 speE spermidine synth 99.0 5.3E-09 1.2E-13 109.6 12.8 109 627-735 148-268 (374)
220 PLN02172 flavin-containing mon 99.0 4.1E-09 8.8E-14 118.1 12.6 39 1-39 11-49 (461)
221 TIGR02023 BchP-ChlP geranylger 99.0 1.8E-08 3.9E-13 111.8 17.5 31 2-32 2-32 (388)
222 PRK03522 rumB 23S rRNA methylu 98.9 6.1E-09 1.3E-13 111.3 13.0 109 619-734 163-273 (315)
223 PRK05257 malate:quinone oxidor 98.9 2.2E-08 4.8E-13 113.1 18.2 58 214-271 182-246 (494)
224 PRK06753 hypothetical protein; 98.9 1.3E-08 2.8E-13 112.7 16.0 52 216-269 99-150 (373)
225 TIGR03219 salicylate_mono sali 98.9 6.3E-09 1.4E-13 116.7 13.7 54 216-271 106-159 (414)
226 TIGR01320 mal_quin_oxido malat 98.9 2.1E-08 4.5E-13 113.3 17.8 58 214-271 177-240 (483)
227 COG0654 UbiH 2-polyprenyl-6-me 98.9 9.7E-09 2.1E-13 113.8 14.8 54 215-268 104-159 (387)
228 PRK06184 hypothetical protein; 98.9 9.2E-09 2E-13 118.2 14.8 62 216-277 110-175 (502)
229 PRK07333 2-octaprenyl-6-methox 98.9 4.9E-09 1.1E-13 117.4 12.1 55 216-270 112-166 (403)
230 PF03291 Pox_MCEL: mRNA cappin 98.9 5.2E-09 1.1E-13 110.8 11.5 109 629-737 62-188 (331)
231 PRK08274 tricarballylate dehyd 98.9 2.1E-08 4.5E-13 114.3 17.3 60 211-270 127-191 (466)
232 PF13738 Pyr_redox_3: Pyridine 98.9 3E-09 6.6E-14 106.7 9.4 49 221-269 88-136 (203)
233 PRK05868 hypothetical protein; 98.9 2.4E-08 5.2E-13 109.9 17.2 52 216-268 106-157 (372)
234 PF05219 DREV: DREV methyltran 98.9 1.5E-08 3.2E-13 100.1 13.6 144 629-787 94-241 (265)
235 TIGR00417 speE spermidine synt 98.9 9.6E-09 2.1E-13 107.2 13.1 107 628-734 71-185 (270)
236 PRK06481 fumarate reductase fl 98.9 1.6E-08 3.5E-13 115.6 16.1 56 215-270 190-250 (506)
237 PRK05714 2-octaprenyl-3-methyl 98.9 1E-08 2.2E-13 114.8 13.7 62 216-277 113-175 (405)
238 KOG1499 Protein arginine N-met 98.9 6.2E-09 1.3E-13 106.9 10.5 106 626-732 57-164 (346)
239 COG1041 Predicted DNA modifica 98.9 1.4E-08 2.9E-13 105.1 13.0 117 617-735 185-310 (347)
240 PLN02672 methionine S-methyltr 98.9 1.3E-08 2.7E-13 121.8 14.6 107 630-736 119-279 (1082)
241 PRK06834 hypothetical protein; 98.9 1.1E-08 2.3E-13 116.3 13.5 55 216-270 101-155 (488)
242 TIGR03197 MnmC_Cterm tRNA U-34 98.9 2.1E-08 4.5E-13 111.2 15.4 64 207-271 124-190 (381)
243 PRK11101 glpA sn-glycerol-3-ph 98.9 1.4E-08 3.1E-13 117.0 14.2 58 214-271 148-211 (546)
244 PRK07190 hypothetical protein; 98.9 3.8E-08 8.2E-13 111.7 17.4 55 217-271 111-165 (487)
245 KOG1975 mRNA cap methyltransfe 98.9 6.7E-09 1.5E-13 103.9 9.3 218 570-799 69-330 (389)
246 PLN02589 caffeoyl-CoA O-methyl 98.9 1.5E-08 3.3E-13 102.5 12.0 116 615-738 68-193 (247)
247 PRK07608 ubiquinone biosynthes 98.9 3.4E-08 7.4E-13 109.9 16.0 60 216-276 112-173 (388)
248 PRK13369 glycerol-3-phosphate 98.9 2.5E-08 5.4E-13 114.1 14.8 58 214-271 154-215 (502)
249 KOG2853 Possible oxidoreductas 98.9 1.4E-07 3E-12 95.1 17.8 42 378-420 442-483 (509)
250 PRK13339 malate:quinone oxidor 98.9 1.8E-08 3.9E-13 112.9 12.9 58 214-271 183-247 (497)
251 TIGR00479 rumA 23S rRNA (uraci 98.8 4.5E-08 9.8E-13 109.8 15.9 112 616-734 279-395 (431)
252 PRK07364 2-octaprenyl-6-methox 98.8 1.9E-08 4.1E-13 113.1 12.9 55 216-270 122-180 (415)
253 COG2263 Predicted RNA methylas 98.8 2.2E-08 4.7E-13 93.5 10.8 79 626-708 42-120 (198)
254 TIGR03378 glycerol3P_GlpB glyc 98.8 9.9E-08 2.2E-12 103.4 17.6 63 215-277 263-328 (419)
255 PF01170 UPF0020: Putative RNA 98.8 3.5E-08 7.7E-13 95.7 12.6 114 619-732 18-148 (179)
256 TIGR01813 flavo_cyto_c flavocy 98.8 2.5E-08 5.4E-13 112.7 13.5 56 215-270 130-191 (439)
257 TIGR02028 ChlP geranylgeranyl 98.8 9.3E-08 2E-12 106.1 17.7 36 1-36 1-36 (398)
258 PRK08013 oxidoreductase; Provi 98.8 4.1E-08 8.8E-13 109.5 14.8 54 216-269 112-166 (400)
259 PF01739 CheR: CheR methyltran 98.8 2.3E-08 5.1E-13 97.6 11.2 114 621-734 23-174 (196)
260 PRK12266 glpD glycerol-3-phosp 98.8 5.1E-08 1.1E-12 111.5 15.8 58 214-271 154-216 (508)
261 PRK05192 tRNA uridine 5-carbox 98.8 9.8E-08 2.1E-12 107.8 17.6 55 216-271 101-157 (618)
262 PF10294 Methyltransf_16: Puta 98.8 4.1E-08 8.9E-13 94.9 12.8 110 626-738 42-159 (173)
263 PRK05329 anaerobic glycerol-3- 98.8 3.8E-08 8.2E-13 108.2 14.0 55 216-270 260-317 (422)
264 COG0220 Predicted S-adenosylme 98.8 1.5E-08 3.2E-13 100.9 9.6 104 631-735 50-164 (227)
265 PTZ00338 dimethyladenosine tra 98.8 1.9E-08 4.1E-13 105.2 10.8 91 615-707 22-112 (294)
266 PRK09126 hypothetical protein; 98.8 2.6E-08 5.6E-13 111.0 12.7 54 217-270 112-166 (392)
267 PRK08243 4-hydroxybenzoate 3-m 98.8 2.9E-08 6.2E-13 110.4 12.9 62 1-78 3-66 (392)
268 PRK07045 putative monooxygenas 98.8 5E-08 1.1E-12 108.5 14.8 55 216-270 107-164 (388)
269 KOG1269 SAM-dependent methyltr 98.8 1.4E-08 3.1E-13 108.0 9.8 162 572-739 56-219 (364)
270 PF12147 Methyltransf_20: Puta 98.8 1.6E-07 3.5E-12 93.9 16.3 107 629-735 135-249 (311)
271 TIGR02085 meth_trns_rumB 23S r 98.8 4.4E-08 9.5E-13 107.0 13.6 109 620-735 224-334 (374)
272 PRK08849 2-octaprenyl-3-methyl 98.8 5.8E-08 1.3E-12 107.7 14.7 54 217-270 112-166 (384)
273 PRK07538 hypothetical protein; 98.8 6.6E-08 1.4E-12 108.4 15.1 61 1-77 1-61 (413)
274 PRK06475 salicylate hydroxylas 98.8 8.3E-08 1.8E-12 107.1 15.9 62 1-78 3-64 (400)
275 PLN00093 geranylgeranyl diphos 98.8 1.3E-07 2.8E-12 106.0 17.2 33 1-33 40-72 (450)
276 KOG2899 Predicted methyltransf 98.8 4.1E-08 8.9E-13 94.4 11.1 106 628-734 57-208 (288)
277 PRK08020 ubiF 2-octaprenyl-3-m 98.8 6.3E-08 1.4E-12 107.9 14.7 55 216-270 113-168 (391)
278 PRK08850 2-octaprenyl-6-methox 98.8 5.2E-08 1.1E-12 109.0 13.9 53 217-269 113-166 (405)
279 PRK08244 hypothetical protein; 98.8 3.9E-08 8.5E-13 112.8 13.2 61 1-77 3-63 (493)
280 PF01494 FAD_binding_3: FAD bi 98.8 1.7E-08 3.7E-13 110.9 9.3 61 2-78 3-63 (356)
281 PF02475 Met_10: Met-10+ like- 98.8 2.4E-08 5.2E-13 97.4 9.2 100 627-732 99-199 (200)
282 PRK09897 hypothetical protein; 98.8 7.8E-08 1.7E-12 108.8 14.6 54 216-269 108-164 (534)
283 PRK07494 2-octaprenyl-6-methox 98.8 1.1E-07 2.3E-12 105.9 15.2 55 216-270 112-166 (388)
284 PLN02463 lycopene beta cyclase 98.8 9.4E-08 2E-12 106.5 14.4 54 216-270 115-168 (447)
285 PRK06183 mhpA 3-(3-hydroxyphen 98.8 1.8E-07 4E-12 108.3 17.3 62 1-78 11-72 (538)
286 PF13454 NAD_binding_9: FAD-NA 98.8 9.5E-08 2.1E-12 90.9 12.4 51 217-268 103-154 (156)
287 PF00890 FAD_binding_2: FAD bi 98.7 6E-08 1.3E-12 109.0 12.9 60 213-272 139-204 (417)
288 PRK14896 ksgA 16S ribosomal RN 98.7 4.2E-08 9.1E-13 101.6 10.7 88 615-707 15-102 (258)
289 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 1E-07 2.3E-12 105.6 14.6 64 1-78 3-66 (390)
290 KOG2415 Electron transfer flav 98.7 1.7E-07 3.7E-12 97.0 14.6 64 214-277 182-264 (621)
291 PRK06617 2-octaprenyl-6-methox 98.7 1.4E-07 3E-12 104.2 15.2 53 216-269 105-158 (374)
292 COG1092 Predicted SAM-dependen 98.7 8.2E-08 1.8E-12 102.8 12.5 109 630-739 218-340 (393)
293 TIGR00095 RNA methyltransferas 98.7 8.3E-08 1.8E-12 94.0 11.6 105 629-736 49-160 (189)
294 PRK00274 ksgA 16S ribosomal RN 98.7 3.5E-08 7.5E-13 103.0 9.1 86 616-706 29-115 (272)
295 COG3963 Phospholipid N-methylt 98.7 1.6E-07 3.4E-12 85.2 11.7 144 579-737 7-158 (194)
296 COG2521 Predicted archaeal met 98.7 3E-08 6.5E-13 94.7 7.5 142 623-784 128-275 (287)
297 PRK08132 FAD-dependent oxidore 98.7 2.6E-07 5.7E-12 107.3 17.1 62 1-78 24-85 (547)
298 PRK05732 2-octaprenyl-6-methox 98.7 1.9E-07 4.1E-12 104.2 15.3 53 218-270 115-168 (395)
299 PLN02661 Putative thiazole syn 98.7 2.6E-07 5.5E-12 97.5 15.0 37 2-38 94-131 (357)
300 PRK07121 hypothetical protein; 98.7 1.7E-07 3.7E-12 107.3 14.8 59 213-271 175-239 (492)
301 KOG2844 Dimethylglycine dehydr 98.7 7.7E-08 1.7E-12 105.2 11.0 65 206-271 175-243 (856)
302 PRK06126 hypothetical protein; 98.7 8.4E-08 1.8E-12 111.6 11.8 62 1-78 8-69 (545)
303 TIGR01790 carotene-cycl lycope 98.7 1.9E-07 4.1E-12 104.0 13.9 55 216-271 86-141 (388)
304 TIGR01812 sdhA_frdA_Gneg succi 98.7 3.6E-07 7.9E-12 106.5 16.2 57 215-271 129-191 (566)
305 PRK10611 chemotaxis methyltran 98.7 8.4E-08 1.8E-12 99.1 9.5 105 630-734 116-261 (287)
306 TIGR01350 lipoamide_DH dihydro 98.7 6.9E-08 1.5E-12 109.9 9.7 55 215-269 211-267 (461)
307 TIGR01292 TRX_reduct thioredox 98.6 1.6E-07 3.5E-12 100.5 12.0 49 221-270 63-111 (300)
308 KOG2852 Possible oxidoreductas 98.6 1.2E-07 2.7E-12 93.5 9.6 49 1-51 11-65 (380)
309 KOG1399 Flavin-containing mono 98.6 1.6E-07 3.4E-12 103.3 11.7 38 1-38 7-44 (448)
310 KOG2940 Predicted methyltransf 98.6 6.8E-08 1.5E-12 91.7 7.4 104 629-737 72-176 (325)
311 PF05148 Methyltransf_8: Hypot 98.6 2.8E-07 6E-12 88.0 11.3 127 616-787 58-186 (219)
312 PRK08401 L-aspartate oxidase; 98.6 5.8E-07 1.3E-11 101.8 16.2 55 215-271 120-175 (466)
313 PLN02464 glycerol-3-phosphate 98.6 9.4E-07 2E-11 103.2 18.2 58 214-271 231-296 (627)
314 TIGR02485 CobZ_N-term precorri 98.6 5.6E-07 1.2E-11 101.3 15.9 61 210-270 118-182 (432)
315 KOG3191 Predicted N6-DNA-methy 98.6 2.3E-06 5E-11 78.9 16.6 107 629-737 43-170 (209)
316 PRK06185 hypothetical protein; 98.6 6.2E-07 1.3E-11 100.5 15.9 60 1-76 7-66 (407)
317 PRK07573 sdhA succinate dehydr 98.6 4.8E-07 1E-11 105.9 15.0 54 218-271 173-232 (640)
318 COG2072 TrkA Predicted flavopr 98.6 3.6E-07 7.7E-12 102.2 13.3 49 1-49 9-58 (443)
319 PRK05249 soluble pyridine nucl 98.6 5.6E-07 1.2E-11 102.4 15.2 55 215-269 216-270 (461)
320 PRK12845 3-ketosteroid-delta-1 98.6 1.6E-06 3.4E-11 100.1 18.7 59 211-270 214-277 (564)
321 PLN02927 antheraxanthin epoxid 98.6 2.3E-07 5E-12 106.8 11.8 53 216-270 195-247 (668)
322 TIGR00755 ksgA dimethyladenosi 98.6 4.3E-07 9.3E-12 94.0 12.8 86 616-706 16-104 (253)
323 TIGR01989 COQ6 Ubiquinone bios 98.6 2.1E-07 4.6E-12 104.9 11.4 54 216-269 118-181 (437)
324 COG4716 Myosin-crossreactive a 98.6 3.4E-07 7.4E-12 93.4 11.5 210 1-245 23-257 (587)
325 TIGR02352 thiamin_ThiO glycine 98.6 2.1E-06 4.5E-11 93.6 18.9 189 214-419 136-336 (337)
326 PRK07804 L-aspartate oxidase; 98.6 9.1E-07 2E-11 102.0 16.6 57 215-271 144-210 (541)
327 PRK06116 glutathione reductase 98.6 6.5E-07 1.4E-11 101.5 15.3 55 215-269 208-263 (450)
328 PRK11933 yebU rRNA (cytosine-C 98.6 4.3E-07 9.3E-12 100.7 13.2 114 626-740 110-247 (470)
329 TIGR01424 gluta_reduc_2 glutat 98.6 3.4E-07 7.4E-12 103.4 12.8 55 215-269 207-261 (446)
330 PLN02697 lycopene epsilon cycl 98.6 5.7E-07 1.2E-11 101.9 14.3 55 216-271 193-248 (529)
331 PRK12842 putative succinate de 98.6 4.3E-07 9.3E-12 105.7 13.6 56 215-270 214-274 (574)
332 KOG3045 Predicted RNA methylas 98.6 2.8E-07 6.1E-12 89.5 9.7 122 618-786 168-291 (325)
333 PRK04338 N(2),N(2)-dimethylgua 98.6 3.5E-07 7.6E-12 99.3 11.7 99 629-734 57-157 (382)
334 PF10672 Methyltrans_SAM: S-ad 98.6 4.2E-07 9.2E-12 93.7 11.7 109 628-737 122-240 (286)
335 TIGR03140 AhpF alkyl hydropero 98.6 4.3E-07 9.3E-12 104.3 13.0 54 217-270 269-322 (515)
336 KOG1661 Protein-L-isoaspartate 98.6 5E-07 1.1E-11 85.3 10.8 112 617-736 68-194 (237)
337 PRK11445 putative oxidoreducta 98.6 1.2E-06 2.7E-11 95.7 15.7 61 1-74 2-62 (351)
338 PRK05945 sdhA succinate dehydr 98.6 6.9E-07 1.5E-11 103.9 14.5 58 214-271 134-197 (575)
339 PLN02823 spermine synthase 98.6 3.8E-07 8.2E-12 96.9 11.1 108 628-736 102-221 (336)
340 COG0578 GlpA Glycerol-3-phosph 98.6 1E-06 2.2E-11 97.5 14.9 58 215-272 164-226 (532)
341 PRK07803 sdhA succinate dehydr 98.6 1.1E-06 2.3E-11 102.9 16.0 36 2-37 10-45 (626)
342 PF03602 Cons_hypoth95: Conser 98.5 2.7E-07 5.8E-12 89.5 9.1 109 628-738 41-156 (183)
343 PRK06996 hypothetical protein; 98.5 1E-06 2.2E-11 98.3 14.9 61 216-276 116-181 (398)
344 PRK06134 putative FAD-binding 98.5 2.6E-06 5.6E-11 99.2 18.4 57 215-271 217-278 (581)
345 PRK08626 fumarate reductase fl 98.5 9.9E-07 2.1E-11 103.5 15.1 59 213-271 156-220 (657)
346 PRK06175 L-aspartate oxidase; 98.5 1.2E-06 2.7E-11 98.0 15.3 56 215-270 128-188 (433)
347 PRK04148 hypothetical protein; 98.5 1E-06 2.2E-11 79.2 11.6 103 620-738 7-112 (134)
348 KOG3178 Hydroxyindole-O-methyl 98.5 1.7E-06 3.7E-11 89.4 14.7 155 630-793 178-337 (342)
349 PRK06416 dihydrolipoamide dehy 98.5 1.4E-06 3E-11 99.2 15.6 55 215-269 213-270 (462)
350 PRK01544 bifunctional N5-gluta 98.5 5.8E-07 1.3E-11 101.8 11.5 106 628-734 346-461 (506)
351 COG0030 KsgA Dimethyladenosine 98.5 5.4E-07 1.2E-11 90.6 9.9 86 616-705 17-104 (259)
352 COG1352 CheR Methylase of chem 98.5 1E-06 2.2E-11 89.8 11.9 125 608-733 76-239 (268)
353 PRK06452 sdhA succinate dehydr 98.5 1.7E-06 3.6E-11 100.3 15.3 57 215-271 136-198 (566)
354 PRK15317 alkyl hydroperoxide r 98.5 9.1E-07 2E-11 101.8 12.8 54 217-270 268-321 (517)
355 TIGR00551 nadB L-aspartate oxi 98.5 2.5E-06 5.5E-11 97.4 16.3 57 215-271 128-189 (488)
356 PRK12834 putative FAD-binding 98.5 3.5E-06 7.6E-11 97.6 17.1 38 2-39 6-45 (549)
357 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 5.9E-07 1.3E-11 90.8 9.2 147 628-785 55-238 (256)
358 PTZ00139 Succinate dehydrogena 98.5 4.3E-06 9.3E-11 97.6 17.7 56 215-270 166-228 (617)
359 TIGR02143 trmA_only tRNA (urac 98.5 1.4E-06 3.1E-11 94.1 12.9 109 617-735 186-311 (353)
360 PRK06263 sdhA succinate dehydr 98.5 2.5E-06 5.4E-11 98.7 15.5 57 215-271 134-197 (543)
361 PF05834 Lycopene_cycl: Lycope 98.5 1.7E-06 3.7E-11 95.2 13.5 54 216-270 88-141 (374)
362 TIGR01421 gluta_reduc_1 glutat 98.4 3E-06 6.5E-11 95.7 15.6 55 215-269 207-263 (450)
363 TIGR01811 sdhA_Bsu succinate d 98.4 2.5E-06 5.5E-11 99.3 15.1 35 3-37 1-35 (603)
364 PRK07395 L-aspartate oxidase; 98.4 2.9E-06 6.4E-11 97.7 15.3 57 214-270 133-196 (553)
365 PRK07251 pyridine nucleotide-d 98.4 4.1E-06 8.9E-11 94.6 16.3 54 215-269 198-251 (438)
366 PRK12839 hypothetical protein; 98.4 6.6E-06 1.4E-10 95.2 18.1 39 2-40 10-48 (572)
367 PRK08958 sdhA succinate dehydr 98.4 4.2E-06 9E-11 97.3 16.5 58 214-271 142-206 (588)
368 PRK06854 adenylylsulfate reduc 98.4 5E-06 1.1E-10 97.0 17.1 57 215-271 132-195 (608)
369 PRK12844 3-ketosteroid-delta-1 98.4 5.1E-06 1.1E-10 96.1 17.0 56 215-270 208-268 (557)
370 PRK06069 sdhA succinate dehydr 98.4 3.4E-06 7.4E-11 98.3 15.7 57 215-271 137-200 (577)
371 COG2520 Predicted methyltransf 98.4 1E-06 2.3E-11 92.3 10.2 108 628-741 187-295 (341)
372 PRK05031 tRNA (uracil-5-)-meth 98.4 2.2E-06 4.8E-11 93.1 13.2 108 617-734 195-319 (362)
373 PRK07512 L-aspartate oxidase; 98.4 4.2E-06 9.2E-11 95.8 16.0 57 214-270 135-196 (513)
374 TIGR00478 tly hemolysin TlyA f 98.4 1.8E-06 3.8E-11 86.5 11.0 101 616-733 61-169 (228)
375 PRK08010 pyridine nucleotide-d 98.4 2.8E-06 6.1E-11 96.0 14.1 54 215-269 199-252 (441)
376 PRK12835 3-ketosteroid-delta-1 98.4 3.9E-06 8.4E-11 97.5 15.3 37 2-38 13-49 (584)
377 PF04820 Trp_halogenase: Trypt 98.4 3E-06 6.6E-11 95.2 14.0 54 216-270 155-210 (454)
378 PLN00128 Succinate dehydrogena 98.4 6.8E-06 1.5E-10 96.0 17.3 57 215-271 187-250 (635)
379 PF07942 N2227: N2227-like pro 98.4 9.7E-06 2.1E-10 82.5 16.2 142 629-786 56-242 (270)
380 PF01134 GIDA: Glucose inhibit 98.4 1.1E-06 2.4E-11 94.3 9.7 52 217-269 97-150 (392)
381 COG0421 SpeE Spermidine syntha 98.4 2.4E-06 5.3E-11 88.0 11.9 114 620-735 68-190 (282)
382 PRK00050 16S rRNA m(4)C1402 me 98.4 9.1E-07 2E-11 91.7 8.6 84 618-704 8-98 (296)
383 KOG0820 Ribosomal RNA adenine 98.4 1.4E-06 2.9E-11 85.8 9.2 86 617-704 46-131 (315)
384 PLN02985 squalene monooxygenas 98.4 5.2E-06 1.1E-10 94.7 15.6 61 1-77 44-104 (514)
385 PF02527 GidB: rRNA small subu 98.4 3.4E-06 7.3E-11 81.5 11.9 96 632-734 51-147 (184)
386 KOG2614 Kynurenine 3-monooxyge 98.4 1.4E-06 3.1E-11 91.5 9.8 34 2-35 4-37 (420)
387 PRK09078 sdhA succinate dehydr 98.4 7.3E-06 1.6E-10 95.6 16.9 57 215-271 149-212 (598)
388 PRK12837 3-ketosteroid-delta-1 98.4 7.1E-06 1.5E-10 94.2 16.5 37 2-39 9-45 (513)
389 TIGR03439 methyl_EasF probable 98.4 5.7E-06 1.2E-10 87.1 14.3 145 580-734 35-196 (319)
390 COG0742 N6-adenine-specific me 98.4 5.8E-06 1.3E-10 78.6 12.8 117 619-736 31-155 (187)
391 COG0116 Predicted N6-adenine-s 98.4 5.1E-06 1.1E-10 87.6 13.5 116 618-734 180-343 (381)
392 PRK07843 3-ketosteroid-delta-1 98.4 6.6E-06 1.4E-10 95.3 15.8 38 2-39 9-46 (557)
393 KOG3420 Predicted RNA methylas 98.4 7E-07 1.5E-11 78.7 5.8 81 625-707 44-125 (185)
394 PTZ00367 squalene epoxidase; P 98.3 4.7E-06 1E-10 95.6 14.2 61 1-77 34-95 (567)
395 KOG1663 O-methyltransferase [S 98.3 4E-06 8.6E-11 81.1 11.4 116 617-740 64-188 (237)
396 TIGR01372 soxA sarcosine oxida 98.3 1E-05 2.3E-10 99.7 18.2 41 1-41 164-204 (985)
397 PRK06370 mercuric reductase; V 98.3 7.4E-07 1.6E-11 101.3 7.5 55 215-269 212-269 (463)
398 PRK12843 putative FAD-binding 98.3 6.4E-06 1.4E-10 95.8 15.4 40 1-40 17-56 (578)
399 PRK09231 fumarate reductase fl 98.3 7.3E-06 1.6E-10 95.3 15.8 57 215-271 133-196 (582)
400 PRK07057 sdhA succinate dehydr 98.3 1.3E-05 2.9E-10 93.3 18.0 57 215-271 148-211 (591)
401 PRK08275 putative oxidoreducta 98.3 5.2E-06 1.1E-10 96.3 14.5 56 215-270 137-199 (554)
402 COG0144 Sun tRNA and rRNA cyto 98.3 1.4E-05 3E-10 86.3 16.7 120 621-741 148-294 (355)
403 PF09445 Methyltransf_15: RNA 98.3 9E-07 1.9E-11 82.8 6.5 73 632-705 2-78 (163)
404 PRK08071 L-aspartate oxidase; 98.3 8.8E-06 1.9E-10 93.2 15.6 56 215-271 130-190 (510)
405 PF00732 GMC_oxred_N: GMC oxid 98.3 1E-05 2.3E-10 86.3 15.2 61 217-277 195-264 (296)
406 PRK07818 dihydrolipoamide dehy 98.3 5.1E-06 1.1E-10 94.5 13.5 56 214-269 212-271 (466)
407 PLN02507 glutathione reductase 98.3 1.9E-05 4.2E-10 90.1 18.0 55 215-269 244-298 (499)
408 PRK05976 dihydrolipoamide dehy 98.3 3.8E-06 8.3E-11 95.7 12.3 37 2-39 6-42 (472)
409 PLN02815 L-aspartate oxidase 98.3 7.9E-06 1.7E-10 94.6 14.7 36 2-38 31-66 (594)
410 KOG2404 Fumarate reductase, fl 98.3 8.1E-06 1.7E-10 82.1 12.5 38 2-39 11-48 (477)
411 PRK08205 sdhA succinate dehydr 98.3 1.1E-05 2.4E-10 94.0 15.9 57 215-271 140-206 (583)
412 PRK08294 phenol 2-monooxygenas 98.3 6.2E-06 1.3E-10 96.7 13.7 60 1-78 33-95 (634)
413 KOG2915 tRNA(1-methyladenosine 98.3 8.1E-06 1.8E-10 80.4 12.1 109 618-733 94-208 (314)
414 TIGR02462 pyranose_ox pyranose 98.3 1.8E-05 4E-10 89.6 16.8 37 1-37 1-37 (544)
415 COG1249 Lpd Pyruvate/2-oxoglut 98.3 6.7E-07 1.5E-11 98.9 5.2 56 214-269 213-270 (454)
416 PRK06467 dihydrolipoamide dehy 98.3 6.6E-06 1.4E-10 93.5 13.4 39 1-39 5-43 (471)
417 PTZ00306 NADH-dependent fumara 98.3 1.4E-05 3E-10 100.1 17.4 38 2-39 411-448 (1167)
418 TIGR03143 AhpF_homolog putativ 98.3 4E-06 8.7E-11 97.1 11.8 38 1-39 5-42 (555)
419 PRK06327 dihydrolipoamide dehy 98.3 8E-07 1.7E-11 101.2 5.9 56 214-269 223-282 (475)
420 COG2265 TrmA SAM-dependent met 98.3 5.5E-06 1.2E-10 91.0 12.0 113 615-734 279-395 (432)
421 TIGR01176 fum_red_Fp fumarate 98.3 1.3E-05 2.7E-10 93.0 15.7 57 215-271 132-195 (580)
422 PRK11783 rlmL 23S rRNA m(2)G24 98.3 7.2E-06 1.6E-10 97.1 13.9 117 619-735 179-347 (702)
423 PF03141 Methyltransf_29: Puta 98.3 5.9E-07 1.3E-11 96.8 4.3 115 615-737 99-221 (506)
424 PF01564 Spermine_synth: Sperm 98.3 4.3E-06 9.3E-11 85.5 10.4 108 628-735 75-191 (246)
425 TIGR02053 MerA mercuric reduct 98.3 6.3E-06 1.4E-10 93.8 12.7 55 215-269 207-264 (463)
426 COG0492 TrxB Thioredoxin reduc 98.3 5.8E-06 1.3E-10 87.0 11.3 52 217-270 63-114 (305)
427 PRK08641 sdhA succinate dehydr 98.3 1.8E-05 3.8E-10 92.2 16.3 36 2-37 5-40 (589)
428 COG1148 HdrA Heterodisulfide r 98.2 9.9E-07 2.2E-11 93.4 4.9 43 1-43 125-167 (622)
429 PF02384 N6_Mtase: N-6 DNA Met 98.2 3.4E-06 7.3E-11 90.6 9.2 120 616-735 33-183 (311)
430 PF08123 DOT1: Histone methyla 98.2 8.8E-06 1.9E-10 80.1 10.6 115 616-733 29-156 (205)
431 KOG1439 RAB proteins geranylge 98.2 2.2E-05 4.7E-10 81.9 13.4 248 2-266 6-284 (440)
432 COG0357 GidB Predicted S-adeno 98.2 1.1E-05 2.5E-10 79.0 10.5 97 630-733 68-166 (215)
433 PRK12779 putative bifunctional 98.2 1.6E-06 3.5E-11 105.1 5.4 40 1-40 307-346 (944)
434 COG3075 GlpB Anaerobic glycero 98.2 7.2E-05 1.6E-09 75.9 16.0 60 216-275 259-321 (421)
435 PF04816 DUF633: Family of unk 98.2 4E-05 8.7E-10 75.5 13.9 99 633-735 1-101 (205)
436 PRK09077 L-aspartate oxidase; 98.1 5.9E-05 1.3E-09 87.1 17.3 36 2-38 10-45 (536)
437 TIGR03315 Se_ygfK putative sel 98.1 2.2E-06 4.7E-11 103.0 5.5 40 1-40 538-577 (1012)
438 PRK00536 speE spermidine synth 98.1 1.9E-05 4.1E-10 80.5 11.3 100 627-736 70-172 (262)
439 PF07156 Prenylcys_lyase: Pren 98.1 8.2E-05 1.8E-09 80.3 16.4 113 145-273 69-189 (368)
440 PRK07845 flavoprotein disulfid 98.1 1.7E-05 3.6E-10 90.2 11.8 38 1-39 2-39 (466)
441 TIGR02061 aprA adenosine phosp 98.1 6.6E-05 1.4E-09 87.0 16.7 33 2-34 1-37 (614)
442 PF06039 Mqo: Malate:quinone o 98.1 5.4E-05 1.2E-09 81.4 14.5 61 214-274 180-247 (488)
443 KOG1331 Predicted methyltransf 98.1 3.6E-06 7.7E-11 84.1 5.2 111 617-739 35-147 (293)
444 TIGR00308 TRM1 tRNA(guanine-26 98.1 3.2E-05 6.9E-10 83.6 12.9 99 630-735 45-147 (374)
445 COG4529 Uncharacterized protei 98.1 1.8E-05 3.9E-10 85.5 10.3 37 1-37 2-41 (474)
446 PF00743 FMO-like: Flavin-bind 98.1 3.2E-06 6.9E-11 96.3 4.8 38 1-38 2-39 (531)
447 PRK09853 putative selenate red 98.1 4.1E-06 8.9E-11 100.1 5.6 40 1-40 540-579 (1019)
448 TIGR00136 gidA glucose-inhibit 98.0 4.2E-05 9.1E-10 86.7 13.2 55 216-271 97-154 (617)
449 PF04672 Methyltransf_19: S-ad 98.0 4.1E-05 8.9E-10 77.2 11.7 169 609-783 47-233 (267)
450 PRK12831 putative oxidoreducta 98.0 4.6E-06 9.9E-11 94.3 5.5 40 1-40 141-180 (464)
451 PLN02852 ferredoxin-NADP+ redu 98.0 5.2E-06 1.1E-10 93.0 5.5 40 1-40 27-68 (491)
452 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 6E-05 1.3E-09 78.9 12.8 120 620-740 76-224 (283)
453 PF01728 FtsJ: FtsJ-like methy 98.0 1.1E-05 2.4E-10 79.0 6.9 110 616-737 7-141 (181)
454 COG5044 MRS6 RAB proteins gera 98.0 0.00023 5E-09 73.5 16.2 247 2-266 8-279 (434)
455 PF09243 Rsm22: Mitochondrial 98.0 7.5E-05 1.6E-09 77.8 13.1 123 616-740 20-144 (274)
456 PRK09564 coenzyme A disulfide 98.0 2.3E-05 5.1E-10 88.8 9.9 44 227-270 68-114 (444)
457 TIGR01438 TGR thioredoxin and 98.0 0.00016 3.5E-09 82.3 16.5 55 215-269 220-277 (484)
458 KOG2665 Predicted FAD-dependen 98.0 6E-05 1.3E-09 75.8 10.9 55 215-269 196-255 (453)
459 PRK13512 coenzyme A disulfide 97.9 0.00012 2.5E-09 82.7 14.6 51 215-269 189-239 (438)
460 PF05958 tRNA_U5-meth_tr: tRNA 97.9 3.7E-05 8E-10 83.3 10.1 88 615-705 183-287 (352)
461 PF12831 FAD_oxidored: FAD dep 97.9 8E-06 1.7E-10 91.6 4.4 39 2-40 1-39 (428)
462 COG1252 Ndh NADH dehydrogenase 97.9 0.00026 5.6E-09 76.6 15.4 51 214-268 208-259 (405)
463 PF00398 RrnaAD: Ribosomal RNA 97.9 6.6E-05 1.4E-09 78.0 10.7 100 615-723 16-119 (262)
464 PRK12769 putative oxidoreducta 97.9 1.1E-05 2.5E-10 95.4 5.5 40 1-40 328-367 (654)
465 PRK12775 putative trifunctiona 97.9 1E-05 2.3E-10 99.2 5.2 40 1-40 431-470 (1006)
466 PTZ00188 adrenodoxin reductase 97.9 1.4E-05 3E-10 88.1 5.3 41 1-41 40-81 (506)
467 KOG1335 Dihydrolipoamide dehyd 97.9 4.8E-05 1E-09 78.6 8.5 53 216-268 253-311 (506)
468 PF13679 Methyltransf_32: Meth 97.9 0.00012 2.6E-09 68.2 10.6 100 627-733 23-129 (141)
469 COG0493 GltD NADPH-dependent g 97.9 1.2E-05 2.7E-10 89.1 4.5 40 1-40 124-163 (457)
470 KOG3201 Uncharacterized conser 97.9 7.2E-05 1.6E-09 67.7 8.5 150 622-802 22-178 (201)
471 PRK14989 nitrite reductase sub 97.9 0.00033 7.1E-09 84.5 17.0 54 216-269 188-243 (847)
472 PRK06567 putative bifunctional 97.9 1.4E-05 3E-10 94.4 5.1 38 1-38 384-421 (1028)
473 KOG2730 Methylase [General fun 97.8 1.5E-05 3.2E-10 76.0 4.0 99 629-730 94-197 (263)
474 TIGR01316 gltA glutamate synth 97.8 1.8E-05 3.8E-10 89.4 5.3 39 1-39 134-172 (449)
475 PRK12778 putative bifunctional 97.8 1.8E-05 3.9E-10 95.3 5.5 40 1-40 432-471 (752)
476 COG0029 NadB Aspartate oxidase 97.8 0.00012 2.5E-09 79.1 10.9 54 216-269 134-194 (518)
477 PRK09754 phenylpropionate diox 97.8 0.00016 3.4E-09 80.6 12.6 48 222-270 193-240 (396)
478 PRK10742 putative methyltransf 97.8 7.7E-05 1.7E-09 74.4 8.8 90 619-709 76-177 (250)
479 PF03059 NAS: Nicotianamine sy 97.8 0.00018 4E-09 73.5 11.8 104 630-734 121-229 (276)
480 COG4076 Predicted RNA methylas 97.8 3.1E-05 6.6E-10 71.7 5.4 101 631-735 34-135 (252)
481 COG4262 Predicted spermidine s 97.8 7.1E-05 1.5E-09 76.6 8.4 142 585-737 254-409 (508)
482 PRK05335 tRNA (uracil-5-)-meth 97.8 2.3E-05 5E-10 85.0 5.1 36 1-36 3-38 (436)
483 PRK04965 NADH:flavorubredoxin 97.8 0.00019 4.2E-09 79.3 12.6 48 222-269 190-237 (377)
484 PRK06115 dihydrolipoamide dehy 97.8 2E-05 4.4E-10 89.5 4.9 38 2-39 5-42 (466)
485 COG2509 Uncharacterized FAD-de 97.8 0.00039 8.5E-09 74.3 14.0 56 214-269 172-228 (486)
486 PRK13800 putative oxidoreducta 97.8 0.00028 6.1E-09 86.5 15.0 33 2-34 15-47 (897)
487 KOG2187 tRNA uracil-5-methyltr 97.8 2.4E-05 5.2E-10 84.4 5.0 107 580-692 337-444 (534)
488 PRK12814 putative NADPH-depend 97.8 2.4E-05 5.2E-10 92.3 5.4 40 1-40 194-233 (652)
489 KOG3987 Uncharacterized conser 97.8 7.2E-06 1.6E-10 76.9 0.7 95 629-735 112-207 (288)
490 PF05971 Methyltransf_10: Prot 97.8 0.00015 3.3E-09 74.8 10.4 96 616-711 84-192 (299)
491 PRK12810 gltD glutamate syntha 97.8 2.6E-05 5.6E-10 88.7 5.3 40 1-40 144-183 (471)
492 PRK12809 putative oxidoreducta 97.7 2.8E-05 6E-10 91.7 5.4 40 1-40 311-350 (639)
493 TIGR01318 gltD_gamma_fam gluta 97.7 3.2E-05 7E-10 87.6 5.5 40 1-40 142-181 (467)
494 PRK10262 thioredoxin reductase 97.7 3.2E-05 6.9E-10 83.5 5.1 40 1-41 7-46 (321)
495 PRK11749 dihydropyrimidine deh 97.7 3.3E-05 7.2E-10 87.6 5.3 39 1-39 141-179 (457)
496 KOG2960 Protein involved in th 97.7 1.2E-05 2.7E-10 75.8 1.4 67 2-78 78-147 (328)
497 TIGR01789 lycopene_cycl lycope 97.7 3.8E-05 8.2E-10 84.2 5.3 37 2-38 1-39 (370)
498 COG0500 SmtA SAM-dependent met 97.7 0.00044 9.6E-09 66.8 12.3 103 633-740 52-160 (257)
499 COG0445 GidA Flavin-dependent 97.7 0.0005 1.1E-08 75.1 13.0 31 2-32 6-36 (621)
500 TIGR03862 flavo_PP4765 unchara 97.7 0.00084 1.8E-08 72.7 14.8 67 205-273 76-143 (376)
No 1
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-62 Score=489.19 Aligned_cols=274 Identities=42% Similarity=0.762 Sum_probs=262.9
Q ss_pred hhhcccCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCch
Q 035870 562 RHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWG 641 (842)
Q Consensus 562 ~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G 641 (842)
.+..++++.+.+.++|+.|||++|+||++|+|++|+|||+||+.++.+|++||.+|++.++++++++||++|||||||||
T Consensus 5 ~~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred ccccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 34456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHH
Q 035870 642 TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCC 721 (842)
Q Consensus 642 ~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~ 721 (842)
.+++++|++++++|+|+|+|++|.+.++++++..|++++|+++..|++++. ++||.|||++|+||++.++++.+|+.+
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 569999999999999999999999999
Q ss_pred HhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHH
Q 035870 722 ESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKN 801 (842)
Q Consensus 722 ~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~ 801 (842)
+++|+|||++++++++.++..+. ....||.+||||||.+|++.++.+...+ +||.|.+.+.++.||++|+.+|+++
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~-~~~~v~~~~~~~~hYa~Tl~~W~~~ 238 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASE-AGFVVLDVESLRPHYARTLRLWRER 238 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHh-cCcEEehHhhhcHHHHHHHHHHHHH
Confidence 99999999999999999887654 5688999999999999999999988776 8999999999999999999999999
Q ss_pred HHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 802 FMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 802 ~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
|+++++++.++ ++|+|.|||++||++||++|+.|.++++|
T Consensus 239 f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q 278 (283)
T COG2230 239 FEANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQ 278 (283)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEE
Confidence 99999999999 99999999999999999999999999998
No 2
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=5.8e-60 Score=510.57 Aligned_cols=333 Identities=31% Similarity=0.582 Sum_probs=291.5
Q ss_pred cceEEEEeChHHHHHHhhcCCchhhHHHHcCceeeccChhhHHHHHHHHHHccCCcchhhhhhhccCCCcchhhhhhhhh
Q 035870 477 LKTVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQKRGWWSPMLFTAGIAS 556 (842)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (842)
++++|+|+||+++.+++.+|+||||||||+|+|+++| |.++++.++.|...... . ..+.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~~~~-~------~~~~~~-------- 95 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLDEKL-P------HHLKDT-------- 95 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccchhhh-h------hhHHHH--------
Confidence 5789999999999999999999999999999999985 99999988887521100 0 000000
Q ss_pred HHHHHhhhcccCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEe
Q 035870 557 AKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEI 636 (842)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDi 636 (842)
......+..+.|+++++++||++|||++|+||++|+|++|+|||+||.. .++|++||.++++.+++++.++++++||||
T Consensus 96 ~~~~~~~~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDI 174 (383)
T PRK11705 96 LRILRARLFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDI 174 (383)
T ss_pred HHHHHHHHhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 0011122456789999999999999999999999999999999999964 479999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHH
Q 035870 637 GCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEE 716 (842)
Q Consensus 637 GcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~ 716 (842)
|||||.++..+++.++++|+|+|+|++|++.|+++++ ++ ++++...|+.+++ ++||.|+|+++++|++.++++.
T Consensus 175 GcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l~--~~fD~Ivs~~~~ehvg~~~~~~ 248 (383)
T PRK11705 175 GCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDLN--GQFDRIVSVGMFEHVGPKNYRT 248 (383)
T ss_pred CCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhcC--CCCCEEEEeCchhhCChHHHHH
Confidence 9999999999998888999999999999999999884 33 4889999998874 7899999999999999888899
Q ss_pred HHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHH
Q 035870 717 FFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLR 796 (842)
Q Consensus 717 ~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~ 796 (842)
+++++.++|||||++++++++.+... .....|+.+|+||++.+|+++++.+..+ .||.+.++++++.||++|+.
T Consensus 249 ~l~~i~r~LkpGG~lvl~~i~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~--~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 249 YFEVVRRCLKPDGLFLLHTIGSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASE--GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHHHHHcCCCcEEEEEEccCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHH--CCcEEEEEecChhhHHHHHH
Confidence 99999999999999999988765431 2346799999999999999999877644 58999999999999999999
Q ss_pred HHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 797 CWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 797 ~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+|+++|+++++++.+ +|+++|.|||+|||++|+++|+.|.++++|
T Consensus 323 ~W~~~f~~~~~~~~~-~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q 367 (383)
T PRK11705 323 AWHENFEAAWPELAD-NYSERFYRMWRYYLLSCAGAFRARDIQLWQ 367 (383)
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 999999999999987 699999999999999999999999999998
No 3
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=2.7e-61 Score=494.70 Aligned_cols=271 Identities=51% Similarity=0.883 Sum_probs=226.9
Q ss_pred CchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHH
Q 035870 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEI 647 (842)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l 647 (842)
+++++++++|++|||++|+||++|||++|+|||++|+++.++|++||.+|++.++++++++||++|||||||||++++++
T Consensus 1 ~~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~ 80 (273)
T PF02353_consen 1 HSKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYA 80 (273)
T ss_dssp --S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHH
T ss_pred CccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhcccc
Q 035870 648 VKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 648 a~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp 727 (842)
|+++|++|+|+++|++|.+++++++++.|+++++++.++|+++++ .+||.|+|++|+||++.++++.+|++++++|||
T Consensus 81 a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp 158 (273)
T PF02353_consen 81 AERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP 158 (273)
T ss_dssp HHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET
T ss_pred HHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999988 599999999999999999999999999999999
Q ss_pred CcEEEEEeecCCCcccccccC-ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHHHHHhH
Q 035870 728 DGLLVLQFISIPDERYNEYRL-SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQ 806 (842)
Q Consensus 728 gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~ 806 (842)
||+++++.++.+...+..... ..+|+++|||||+.+|+++++...+.+ .||+|.++++++.||++|+++|+++|.+++
T Consensus 159 gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~-~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~ 237 (273)
T PF02353_consen 159 GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED-AGLEVEDVENLGRHYARTLRAWRENFDANR 237 (273)
T ss_dssp TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH-TT-EEEEEEE-HHHHHHHHHHHHHHHHHTH
T ss_pred CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc-CCEEEEEEEEcCcCHHHHHHHHHHHHHHHH
Confidence 999999999998876655443 349999999999999999999987776 899999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 807 SKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 807 ~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+++.++ |+++|+|||++||++|+++|+.|.++++|
T Consensus 238 ~~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~~~~Q 272 (273)
T PF02353_consen 238 EEIIAL-FDEEFYRMWRYYLAYCAAGFRAGSIDVFQ 272 (273)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEe
Confidence 999999 99999999999999999999999999998
No 4
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=100.00 E-value=8.3e-54 Score=422.98 Aligned_cols=409 Identities=40% Similarity=0.687 Sum_probs=374.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee----CCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF----DGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~----~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||+|+|||||||.|+++ ++||+||+.+++||+++|... +|+.+|.|.++++...||++.+|++++|++..
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~ 87 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK 87 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence 5899999999999999999987 899999999999999999953 57899999999998899999999999999999
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
..++++.+..+.| .++|.+..++..++.+..+.+.+.++.+++++++|........ + .....+.++++|+++++
T Consensus 88 as~Msf~v~~d~g-glEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~----d-~~~~~~~tl~~~L~~~~ 161 (447)
T COG2907 88 ASFMSFSVSLDMG-GLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPS----D-NAGQGDTTLAQYLKQRN 161 (447)
T ss_pred ccceeEEEEecCC-ceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccch----h-hhcCCCccHHHHHHhcC
Confidence 9999999987764 4889887888889999999999999999999999876422111 1 11226889999999999
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCC
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~ 236 (842)
++..|.+.++.|+.+++|+++..+++.+|+..++.++.++++..+.+++.|+++.||+..+++.|+..+ +++|.+++
T Consensus 162 f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~---~~~i~t~~ 238 (447)
T COG2907 162 FGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRT 238 (447)
T ss_pred ccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccc---cceeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 67899999
Q ss_pred CeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeeceEEEecCCCCcCCCCCCcce
Q 035870 237 EVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFLHRDKRFMPQNPAAWSA 316 (842)
Q Consensus 237 ~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~p~~~~~~~~ 316 (842)
+|.+|.+-.+++.|+..+|++-.+|+||+|+.++++..+|++ +++++.+.+.++.|+.+..++|.|.+++|.+...|++
T Consensus 239 ~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aVlhtd~~lmPrR~~Awas 317 (447)
T COG2907 239 PVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAVLHTDASLMPRRLRAWAS 317 (447)
T ss_pred ceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeEEeecccccccccccccc
Confidence 999999999999999999999999999999999999999997 7889999999999999999999999999999999999
Q ss_pred eeeccc---CCCceEEEEEcccccCCCCCCCCeEEecC--CCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeE
Q 035870 317 WNFLES---FDSKVCLTYWLNVLQNLGETSLPFLVTLN--PDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIW 391 (842)
Q Consensus 317 ~~~~~~---~~~~~~v~~~~~~l~~l~~~~~~~~~~l~--~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 391 (842)
|+|... ......+++++|.++.+... .+.+++++ +..+|..++.+-.+.+|.|++.....+.++...++..+.|
T Consensus 318 wny~~~~~~e~~~~~lty~mN~lq~l~~~-~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~~avraqq~l~alqg~~~tw 396 (447)
T COG2907 318 WNYLGTVQWELCQGSLTYWMNRLQALISV-RDYFVTLNNRPWVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTW 396 (447)
T ss_pred cceeccccccccCcceeccHHHhhcccCC-cceEEEecCCcccChHHhhHHhhcCCcCCCHHHHHHHHHHHhhhcCCCCC
Confidence 999976 33566889999999999988 99999999 6666777888999999999999999999999999999999
Q ss_pred EeccccCCCCCchhHhHHHHHHHHhcCCccc
Q 035870 392 FCGAYQGYGFHEDGLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 392 ~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~ 422 (842)
|||.|.|.|+||+.+.+|..+|+.+ +.+++
T Consensus 397 fcgAy~g~GFHeDg~~aGl~va~~l-g~~w~ 426 (447)
T COG2907 397 FCGAYFGRGFHEDGLQAGLAVAEDL-GAPWE 426 (447)
T ss_pred cchhhhccccchhhhhhHHHHHHhc-CCccc
Confidence 9999999999999999999999997 55543
No 5
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-35 Score=316.83 Aligned_cols=394 Identities=21% Similarity=0.328 Sum_probs=277.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|+|+|||||+|||+|||+|++++ .+|+|||+.+++||.++|+..+|+.+|.|+|.|... .+.+.++++++|++....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-KEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-hHHHHHHHHHhCcHHhhc
Confidence 78999999999999999999999 999999999999999999999999999999999654 488889999999998876
Q ss_pred c--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 79 D--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 79 ~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
. ......+.+|+.+.++... +..+...... ++. ...+ ...++... ......++.++++|++++
T Consensus 80 ~~~~~~~~i~~~gkl~p~P~~~-i~~ip~~~~~--~~~------~~~~---~~~~~~~~--~~~~~~~d~sv~~f~r~~- 144 (444)
T COG1232 80 WNSTARKYIYYDGKLHPIPTPT-ILGIPLLLLS--SEA------GLAR---ALQEFIRP--KSWEPKQDISVGEFIRRR- 144 (444)
T ss_pred cCCcccceEeeCCcEEECCccc-eeecCCcccc--chh------HHHH---HHHhhhcc--cCCCCCCCcCHHHHHHHH-
Confidence 2 2333456778877776543 2222111110 000 0000 01111111 112334799999999999
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHH-hhccc--cc---------cCCCCceEEecCChhHHHHHHHHH
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFC-RNHHL--LQ---------LFGRPQWLTVRWRSHSYVNKVRKQ 224 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~--~~---------~~~~~~~~~~~gG~~~l~~~L~~~ 224 (842)
+++++.+.++.|++.++|+.+.+++|...+....... ...+. .+ ....+.+.+++||+++++++|++.
T Consensus 145 fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~ 224 (444)
T COG1232 145 FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEK 224 (444)
T ss_pred HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHH
Confidence 8999999999999999999999999654222211111 11110 00 112246889999999999999999
Q ss_pred hhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecC
Q 035870 225 LESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRD 303 (842)
Q Consensus 225 l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~ 303 (842)
++. +|+++++|++|.+++.++.+++.+|+.+.||.||+|+|++.+..++++ ....+.+.++.+.+ ..+++.++
T Consensus 225 l~~---~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~ 298 (444)
T COG1232 225 LEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKELQYTSVVTVVVGLD 298 (444)
T ss_pred hhh---ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhhccccceEEEEEEec
Confidence 954 499999999999998888888889999999999999999999999987 34466677788866 56667776
Q ss_pred CC---CcCCC--------C-----CCcceeeecc-cCCCceEEEEEcccc--cCCC--------CCCCCeEEecCC-CCC
Q 035870 304 KR---FMPQN--------P-----AAWSAWNFLE-SFDSKVCLTYWLNVL--QNLG--------ETSLPFLVTLNP-DHV 355 (842)
Q Consensus 304 ~~---~~p~~--------~-----~~~~~~~~~~-~~~~~~~v~~~~~~l--~~l~--------~~~~~~~~~l~~-~~~ 355 (842)
.. ..|++ . ..|.+-.++. .|.+...+....... +.+. +...+.+..+.+ ...
T Consensus 299 ~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~ 378 (444)
T COG1232 299 EKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD 378 (444)
T ss_pred cccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc
Confidence 63 22222 1 2343322222 233555555444321 1111 111122222332 223
Q ss_pred Cc-ceeEEEEcCCCCCCHHHHHHHHhhhhhcC--CCCeEEecccc-CCCCCchhHhHHHHHHHHhc
Q 035870 356 PE-HTLLKWSTGHPVPSVAASKASLELDHIQG--KRGIWFCGAYQ-GYGFHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 356 ~~-~~~~~w~~~~p~~~~~~~~~~~~~~~~~~--~~~l~~aG~~~-g~G~~e~A~~SG~~aA~~Il 417 (842)
|. ..+.+|.+++|+|.+++.+....+....+ .+||..+|.|. |.|+ .+|+.+|..+|++|+
T Consensus 379 ~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~-~d~I~~g~~aa~~l~ 443 (444)
T COG1232 379 PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGL-PDCIAAGKEAAEQLL 443 (444)
T ss_pred hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCc-hHHHHHHHHHHHHhh
Confidence 33 36669999999999999999988887333 48999999965 6688 999999999999985
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.7e-34 Score=328.63 Aligned_cols=395 Identities=19% Similarity=0.245 Sum_probs=267.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
+||+|||||+|||+||++|+++ |++|+|||+++++||+++|...+|+.+|.|+|+++. .++++.++++++|+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~-~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE-RKKSAPDLVKDLGLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCcccccc-CChHHHHHHHHcCCCcc
Confidence 6899999999999999999999 999999999999999999999999999999999975 67889999999999765
Q ss_pred ccc--ceeeEeccC-CCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHH
Q 035870 77 MSD--MSFSVSLEK-GHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVN 153 (842)
Q Consensus 77 ~~~--~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 153 (842)
... ......+.+ |+.+.++. .+...... ..+. +...+... ....... ....++|+.+|++
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~~~--~~~~~~~~----------~~~~~~~-~~~~d~s~~e~l~ 144 (462)
T TIGR00562 82 LVSDATGQRYVLVNRGKLMPVPT--KIAPFVKT--GLFS--LGGKLRAG----------MDFIRPA-SPGKDESVEEFVR 144 (462)
T ss_pred cccCCCCceEEEECCCceecCCC--ChHHHhcC--CCCC--chhhHHhh----------hhhccCC-CCCCCcCHHHHHH
Confidence 432 111222222 44332221 11000000 0000 00001000 0111111 1124699999999
Q ss_pred hcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHh------------hc---cc---ccc--CCCCceEEecCC
Q 035870 154 SRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCR------------NH---HL---LQL--FGRPQWLTVRWR 213 (842)
Q Consensus 154 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~---~~---~~~--~~~~~~~~~~gG 213 (842)
++ +++.+.+.++.|++.++|+.++++++...+...+.... .. .. ... ..+..+..++||
T Consensus 145 ~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 223 (462)
T TIGR00562 145 RR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATG 223 (462)
T ss_pred Hh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchh
Confidence 87 78888899999999999999999884332221111110 00 00 000 011237889999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
+++|++.|++.+. .++|+++++|++|..++++|.|++.+|+++.||+||+|+|++.+..++++ .++...+.+.+++|
T Consensus 224 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~~~~~l~~l~~ 300 (462)
T TIGR00562 224 LETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNSASSHLDKIHS 300 (462)
T ss_pred HHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHHHHHHHhcCCC
Confidence 9999999999995 27899999999999999999999988888999999999999999999976 56677888999999
Q ss_pred ee-ceEEEecCCCCcCC-----------CCC-Ccceeeec-----c-cCCCceEEEEEccccc--CC---CC-----CCC
Q 035870 294 VY-SDIFLHRDKRFMPQ-----------NPA-AWSAWNFL-----E-SFDSKVCLTYWLNVLQ--NL---GE-----TSL 344 (842)
Q Consensus 294 ~~-~~v~l~~~~~~~p~-----------~~~-~~~~~~~~-----~-~~~~~~~v~~~~~~l~--~l---~~-----~~~ 344 (842)
.+ .++.+.|+.+.++. ... ....+.+. . .+.+...++.++.... .+ .+ ...
T Consensus 301 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~ 380 (462)
T TIGR00562 301 PPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVL 380 (462)
T ss_pred CceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHH
Confidence 99 46778876543322 110 00112221 1 2344555655554311 11 11 011
Q ss_pred CeEEecC-CCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEecccc-CCCCCchhHhHHHHHHHHhcC
Q 035870 345 PFLVTLN-PDHVPEH-TLLKWSTGHPVPSVAASKASLELDH--IQGKRGIWFCGAYQ-GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 345 ~~~~~l~-~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG~~~-g~G~~e~A~~SG~~aA~~Il~ 418 (842)
+.+..+. ....|.. .+++|.+++|.|.+++......+.+ ....+||++||+|+ |.|+ ++|+.||.++|++|+.
T Consensus 381 ~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i-~~~i~sg~~~a~~~~~ 458 (462)
T TIGR00562 381 RDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGI-PDCIDQGKAAASDVLT 458 (462)
T ss_pred HHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcH-HHHHHHHHHHHHHHHH
Confidence 2222222 2222444 6679999999999999888777764 23357999999966 6788 9999999999999965
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.6e-34 Score=327.95 Aligned_cols=402 Identities=17% Similarity=0.260 Sum_probs=263.6
Q ss_pred CcEEEECCChHHHHHHHHHHhC------CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA------GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~------G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
|+|+|||||+|||+||++|++. |++|+|||+++++||+++|.+.+|+.+|.|+|++.. .++++.+|++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~-~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA-RNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc-CCHHHHHHHHHcCCc
Confidence 5799999999999999999986 479999999999999999999999999999999964 678899999999998
Q ss_pred cccccc--eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHH
Q 035870 75 MEMSDM--SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFV 152 (842)
Q Consensus 75 ~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 152 (842)
...... .....+.++....++.. .+..+.......+........ ..++ ...+.. .......+++|+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~p~~~~~~~~~~~~~~~-~~~~---~~~~~~---~~~~~~~~~~sv~~~l 152 (463)
T PRK12416 81 EEMVYNETGISYIYSDNTLHPIPSD-TIFGIPMSVESLFSSTLVSTK-GKIV---ALKDFI---TKNKEFTKDTSLALFL 152 (463)
T ss_pred cceecCCCCceEEEECCeEEECCCC-CeecCCCChHHhhcCCcCCHH-HHHH---hhhhhc---cCCCCCCCCCCHHHHH
Confidence 665321 12222233333332221 000000000000000000000 0000 001111 1111123689999999
Q ss_pred HhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHH-HHHHHhhcc-----------ccccCCCCceEEecCChhHHHHH
Q 035870 153 NSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFS-VLSFCRNHH-----------LLQLFGRPQWLTVRWRSHSYVNK 220 (842)
Q Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~gG~~~l~~~ 220 (842)
+++ +++++.+.++.|++.++|+.++++++..+... +..+....+ .........+++++||+++|+++
T Consensus 153 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 231 (463)
T PRK12416 153 ESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDR 231 (463)
T ss_pred HHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHH
Confidence 987 78888999999999999999999885433222 122211111 00112234578899999999999
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEE
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIF 299 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~ 299 (842)
|++.+++ ++|++|++|++|+.++++|.|++.+|+++.||+||+|+|++.+.+++.++ ...+.+.++.+.+ .+++
T Consensus 232 l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~---~l~~~~~~~~~~~~~~v~ 306 (463)
T PRK12416 232 LEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQSN---ELNEQFHTFKNSSLISIY 306 (463)
T ss_pred HHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCCc---chhHHHhcCCCCceEEEE
Confidence 9999963 68999999999999999999999888889999999999999999988652 3344567777777 5778
Q ss_pred EecCCCCc--CCCCC---------------Ccceeeecc-cCCCceEEEEEccc-------ccCCCCC-----CCCeEEe
Q 035870 300 LHRDKRFM--PQNPA---------------AWSAWNFLE-SFDSKVCLTYWLNV-------LQNLGET-----SLPFLVT 349 (842)
Q Consensus 300 l~~~~~~~--p~~~~---------------~~~~~~~~~-~~~~~~~v~~~~~~-------l~~l~~~-----~~~~~~~ 349 (842)
+.++.+.+ |.... .|.+..+.. .++....++.+++. +..+.+. ..+.+..
T Consensus 307 l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~ 386 (463)
T PRK12416 307 LGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEK 386 (463)
T ss_pred EEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHH
Confidence 88885422 32110 121111222 23445555555431 1111111 1112221
Q ss_pred -cCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEeccc-cCCCCCchhHhHHHHHHHHhcC
Q 035870 350 -LNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH--IQGKRGIWFCGAY-QGYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 350 -l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG~~-~g~G~~e~A~~SG~~aA~~Il~ 418 (842)
++....|.. .+.+|..+.|.|..++......+.+ ..+.++|++||+| .|.|+ ++|+.||+++|++|+.
T Consensus 387 ~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i-~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 387 SLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGI-GACIGNGKNTANEIIA 459 (463)
T ss_pred HhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccH-HHHHHHHHHHHHHHHH
Confidence 233333433 6679999999999988777766654 2345899999995 57787 9999999999999974
No 8
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=320.36 Aligned_cols=402 Identities=19% Similarity=0.265 Sum_probs=260.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|+|+|||||+|||+||+.|+++| ++|+|||+++++||+++|.+.+|+.+|.|+|++.. .++++.++++++|+.....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA-RKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC-CcHHHHHHHHHcCCcccee
Confidence 78999999999999999999988 89999999999999999999999999999998854 6778999999999975533
Q ss_pred cc--eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 79 DM--SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 79 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
.. .....+.+|+.+.++.. .+..........+...+..... .++. .... ........+++|+++|+.+.
T Consensus 80 ~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~---~~~~~~~~~~~s~~e~l~~~- 150 (451)
T PRK11883 80 ANTTGQSYIYVNGKLHPIPPG-TVMGIPTSIAPFLFAGLVSPIG-KLRA---AADL---RPPRWKPGQDQSVGAFFRRR- 150 (451)
T ss_pred cCCCCcceEEECCeEEECCCC-CeeccCCCchhhhcCCCCCHHH-HHHh---hCcc---cCCCCCCCCCcCHHHHHHHh-
Confidence 21 12233345554333221 0000000000000000000000 0000 0000 00111123678999999876
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHH-HHHHHhhcc---------cccc--CCCCceEEecCChhHHHHHHHHH
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFS-VLSFCRNHH---------LLQL--FGRPQWLTVRWRSHSYVNKVRKQ 224 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~---------~~~~--~~~~~~~~~~gG~~~l~~~L~~~ 224 (842)
+++.+.+.++.|++.++|++++++++...... +..+..... .... .....+++++||++.+++.|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~ 230 (451)
T PRK11883 151 FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEK 230 (451)
T ss_pred ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHh
Confidence 88889999999999999999999885432221 111111110 0000 12456789999999999999999
Q ss_pred hhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecC
Q 035870 225 LESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRD 303 (842)
Q Consensus 225 l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~ 303 (842)
++.. +|++|++|++|+.++++|.|++.+|+++.||+||+|+|+.++.+++.+ +...+++.+++|.+ .++++.++
T Consensus 231 l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~---~~~~~~~~~~~~~~~~~v~l~~~ 305 (451)
T PRK11883 231 LPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA---PPAFALFKTIPSTSVATVALAFP 305 (451)
T ss_pred CcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC---hhHHHHHhCCCCCceEEEEEEec
Confidence 9533 899999999999999999999999989999999999999999998764 33467778888888 57888888
Q ss_pred CCCc--CCC---------CCCcce--ee---ecc-cCCCceEEEEEcccc-----cCCCC-----CCCCeEEec-CCCCC
Q 035870 304 KRFM--PQN---------PAAWSA--WN---FLE-SFDSKVCLTYWLNVL-----QNLGE-----TSLPFLVTL-NPDHV 355 (842)
Q Consensus 304 ~~~~--p~~---------~~~~~~--~~---~~~-~~~~~~~v~~~~~~l-----~~l~~-----~~~~~~~~l-~~~~~ 355 (842)
.++. +.. ...+.. |. +.. .+++...+....... ....+ .+.+.+..+ +....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~ 385 (451)
T PRK11883 306 ESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGD 385 (451)
T ss_pred cccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCC
Confidence 7631 111 000001 11 111 133444444333211 11110 011122222 22222
Q ss_pred Ccc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEecccc-CCCCCchhHhHHHHHHHHhcC
Q 035870 356 PEH-TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQ-GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 356 ~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~-g~G~~e~A~~SG~~aA~~Il~ 418 (842)
+.. .+.+|.++.|.+.+++......+.. ....++||+||+|+ +.|+ ++|+.||+++|++|+.
T Consensus 386 ~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i-~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 386 PEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGL-PDCIAQAKRAAARLLA 450 (451)
T ss_pred ceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccH-HHHHHHHHHHHHHHHh
Confidence 333 6669999999999888665555544 22257999999976 5666 9999999999999975
No 9
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=5.1e-33 Score=318.77 Aligned_cols=397 Identities=20% Similarity=0.232 Sum_probs=262.6
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
+||+|||||+|||+||++|+++ |++|+|||+++++||+++|.+.+|+.+|.|+|++. ..++.+..++++ |+......
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~-~~~~~~~~l~~~-gl~~~~~~ 90 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQ-PSDPELTSAVDS-GLRDDLVF 90 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhc-cCcHHHHHHHHc-CChhheec
Confidence 5899999999999999999999 99999999999999999999999999999999996 467777788777 87655421
Q ss_pred ---ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 80 ---MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 80 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
......+.+|+.+.++. .+..++. ...++ ... .++.. ...+... ......+++|+++|++++
T Consensus 91 ~~~~~~~~~~~~g~~~~~p~--~~~~~~~--~~~~~-----~~~-~~~~~---~~~~~~~-~~~~~~~~~sv~~~l~~~- 155 (496)
T PLN02576 91 PDPQAPRYVVWNGKLRPLPS--NPIDLPT--FDLLS-----APG-KIRAG---LGAFGWK-RPPPPGREESVGEFVRRH- 155 (496)
T ss_pred CCCCceEEEEECCEEEEcCC--ChHHhcC--cCcCC-----hhH-HHHHh---HHHhhcc-CCCCCCCCCcHHHHHHHh-
Confidence 11122334555444332 1101100 00111 100 11110 0111100 011113689999999987
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh-----------cccc--------------ccCCCCceEEec
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN-----------HHLL--------------QLFGRPQWLTVR 211 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~--------------~~~~~~~~~~~~ 211 (842)
+++...+.++.|++.++|+.++++++...+...+..+.. .... ........+.++
T Consensus 156 ~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (496)
T PLN02576 156 LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFR 235 (496)
T ss_pred cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEecc
Confidence 899999999999999999999999854333222111100 0000 001223467889
Q ss_pred CChhHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCc-EEEEeC--CCc-EEeCCEEEEccChHHHHHhhcCCCChHHHH
Q 035870 212 WRSHSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKG-CTIVCG--DGS-REFYNSCVMALHAPDALKILGNQATFDETR 286 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~-v~V~~~--~G~-~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~ 286 (842)
||+++|+++|++.+ + ++|++|++|++|++.+++ |.|++. +|+ ++.||+||+|+|+.++..++++ .++...+
T Consensus 236 gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~-~~~~~~~ 311 (496)
T PLN02576 236 GGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP-KSPAAAD 311 (496)
T ss_pred chHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcc-cCHHHHH
Confidence 99999999999988 4 689999999999998886 655543 553 6999999999999999999986 5667788
Q ss_pred hccccceee-ceEEEecCCCCcCCC--------CC---------------Ccceeeecc-cCCCceEEEEEcccc-----
Q 035870 287 ILGAFQYVY-SDIFLHRDKRFMPQN--------PA---------------AWSAWNFLE-SFDSKVCLTYWLNVL----- 336 (842)
Q Consensus 287 ~l~~~~~~~-~~v~l~~~~~~~p~~--------~~---------------~~~~~~~~~-~~~~~~~v~~~~~~l----- 336 (842)
.+.++.|.+ .++.+.|+.+.++.+ .. .|.+..++. .+++...++.++...
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~ 391 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGI 391 (496)
T ss_pred HhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCccc
Confidence 899999998 467788877655431 10 111111211 134445555555421
Q ss_pred cCCCC-----CCCCeEEecCC-CC--CCcc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCC--CCeEEecccc-CCCCCc
Q 035870 337 QNLGE-----TSLPFLVTLNP-DH--VPEH-TLLKWSTGHPVPSVAASKASLELDH-IQGK--RGIWFCGAYQ-GYGFHE 403 (842)
Q Consensus 337 ~~l~~-----~~~~~~~~l~~-~~--~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~--~~l~~aG~~~-g~G~~e 403 (842)
..+.+ .+.+.+..+.+ .. .|.. .+++|.++.|.|.+++....+.+.. .... +||++||+|+ |.|+ +
T Consensus 392 ~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i-~ 470 (496)
T PLN02576 392 ASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVAL-G 470 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccH-H
Confidence 11111 11122222222 21 2333 4569999999999998877666655 3333 7999999976 6777 9
Q ss_pred hhHhHHHHHHHHhcCC
Q 035870 404 DGLKAGMTAAHGVLGK 419 (842)
Q Consensus 404 ~A~~SG~~aA~~Il~~ 419 (842)
+|+.||.++|++|+..
T Consensus 471 ~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 471 KCVESGYEAADLVISY 486 (496)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999754
No 10
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=2.7e-32 Score=307.44 Aligned_cols=383 Identities=18% Similarity=0.221 Sum_probs=237.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCC-CchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV-TYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~-~~~~~~~l~~~lGl~~~~~~ 79 (842)
++|+|||||+|||+||+.|.++|++|+||||++++|||++|....|+.+|+|++|+++. ..+.+.+|++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 58999999999999999999999999999999999999999888899999999999753 23457899999999765543
Q ss_pred ceeeEeccCC-Cce-eeCCCCCCcchhhhhhccCChHHHHHHHHHH-hhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 80 MSFSVSLEKG-HGC-EWGSRNGLSSLFAQKKNVLNPYFWQMLREII-KFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 80 ~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
....+.+..+ ..+ .+.. ....++......+...+ ++.... ..... ...+++|+.+|++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~s~~~~~~~~~ 144 (435)
T PLN02268 81 GDNSVLYDHDLESYALFDM----------DGNQVPQELVTKVGETFERILEET----EKVRD--EHEEDMSLLQAISIVL 144 (435)
T ss_pred CCccccccccccccceecC----------CCCCCCHHHHHHHHHHHHHHHHHH----HHHHh--ccCCCcCHHHHHHHHh
Confidence 3222222211 111 1111 11111222222221111 111111 11111 1126789999865421
Q ss_pred ----------CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhh
Q 035870 157 ----------YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLE 226 (842)
Q Consensus 157 ----------~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~ 226 (842)
+.+++.+.++.| +.+.++.++++++.. .. .. ...+. +....+++|+++++++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~---~~----~~---~~~~~-g~~~~~~~G~~~l~~~l~~--- 209 (435)
T PLN02268 145 ERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLK---SW----DQ---EELLE-GGHGLMVRGYDPVINTLAK--- 209 (435)
T ss_pred hhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchh---hc----CC---ccccC-CCceeecCCHHHHHHHHhc---
Confidence 334444445556 456678888777332 11 10 11111 2234688899999999987
Q ss_pred hcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh---hcCCCChHHHHhccccceee-ceEEEec
Q 035870 227 SWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI---LGNQATFDETRILGAFQYVY-SDIFLHR 302 (842)
Q Consensus 227 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~v~l~~ 302 (842)
+.+|++|++|++|..++++|.|++.+|+++.||+||+|+|+.++++. +.+.+++...+++++++|.. .++++.|
T Consensus 210 --~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f 287 (435)
T PLN02268 210 --GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHF 287 (435)
T ss_pred --cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEe
Confidence 44799999999999999999999999988999999999999998753 33446677788889999988 6899999
Q ss_pred CCCCcCCCCCC-------cceeeecc--cCCCceEEEEEccc-----ccCCCCC-----CCCeEEecCCC-CCCcc-eeE
Q 035870 303 DKRFMPQNPAA-------WSAWNFLE--SFDSKVCLTYWLNV-----LQNLGET-----SLPFLVTLNPD-HVPEH-TLL 361 (842)
Q Consensus 303 ~~~~~p~~~~~-------~~~~~~~~--~~~~~~~v~~~~~~-----l~~l~~~-----~~~~~~~l~~~-~~~~~-~~~ 361 (842)
+.++|+..... +....+.. ...+..++..+... +..+.+. +.+.+..+.+. ..|.. .++
T Consensus 288 ~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~ 367 (435)
T PLN02268 288 DSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVS 367 (435)
T ss_pred CCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEec
Confidence 99999764210 11111111 12233344444332 1111111 11122222222 12333 555
Q ss_pred EEEc------CCCCCCHHHH-HHHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcC
Q 035870 362 KWST------GHPVPSVAAS-KASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 362 ~w~~------~~p~~~~~~~-~~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~ 418 (842)
+|.. ++..+.++.. .....+ .+|.++|||||+++. .|++|||+.||+++|++|+.
T Consensus 368 ~W~~dp~~~G~~~~~~~g~~~~~~~~l--~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 368 RWGSDPNSLGCYSYDLVGKPHDLYERL--RAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred ccCCCCCCCccCCCCCCCCCHHHHHHH--hCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 8852 1222222221 111112 346689999999763 56679999999999999974
No 11
>PLN02612 phytoene desaturase
Probab=100.00 E-value=9.7e-32 Score=308.14 Aligned_cols=413 Identities=18% Similarity=0.218 Sum_probs=246.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
++|+|||||++||+||++|+++|++|+|+|+++++||++.|++. +|+.+|.|+|++. +.++++.++++++|+......
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~-g~~~~~~~ll~elG~~~~~~~ 172 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNVQNLFGELGINDRLQW 172 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEe-CCCchHHHHHHHhCCccccee
Confidence 58999999999999999999999999999999999999999875 8899999999996 478899999999999765431
Q ss_pred c--eeeEecc--CCCceeeCCCCCCcchhhhhhccCC-hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHh
Q 035870 80 M--SFSVSLE--KGHGCEWGSRNGLSSLFAQKKNVLN-PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNS 154 (842)
Q Consensus 80 ~--~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 154 (842)
. ...+.+. .+....+..+..++..+......+. ...+. ..+.+++..................++.|+.+|+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls-~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~ 251 (567)
T PLN02612 173 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLT-WPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRK 251 (567)
T ss_pred cccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCC-HHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHh
Confidence 1 1111111 1221111111101111000000000 00000 001111110000000000001111268999999999
Q ss_pred cCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCCh-hHHHHHHHHHhhhcCceEE
Q 035870 155 RGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRS-HSYVNKVRKQLESWGCQIR 233 (842)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~L~~~l~~~G~~i~ 233 (842)
.+.++.+.+.++.|++...++.+++++ |+..++..+.. +.+...+.....+.|+. ..++++|++.+++.|++|+
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~p~~~---S~~~~l~~l~~--~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~ 326 (567)
T PLN02612 252 QGVPDRVNDEVFIAMSKALNFINPDEL---SMQCILIALNR--FLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVR 326 (567)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCHHHh---hHHHHHHHHHH--HHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999999988887 55555544332 11112223444555654 6899999999998999999
Q ss_pred eCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ceEEEecCCCCcCC
Q 035870 234 TSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SDIFLHRDKRFMPQ 309 (842)
Q Consensus 234 ~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~v~l~~~~~~~p~ 309 (842)
+|++|++|..++++ +.|++.+|+++.||+||+|+|+..+..++++... .+..+.+.++.+.+ .++++.++.+++..
T Consensus 327 l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~ 406 (567)
T PLN02612 327 LNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNT 406 (567)
T ss_pred eCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCC
Confidence 99999999987665 3577788988999999999999999888875332 24455566677666 57889999886421
Q ss_pred -CCCCcc-----e--eeec-----ccCCCceEEEEEcccccC---CC-----CCCCCeEEecCCCC-CC---cceeEEEE
Q 035870 310 -NPAAWS-----A--WNFL-----ESFDSKVCLTYWLNVLQN---LG-----ETSLPFLVTLNPDH-VP---EHTLLKWS 364 (842)
Q Consensus 310 -~~~~~~-----~--~~~~-----~~~~~~~~v~~~~~~l~~---l~-----~~~~~~~~~l~~~~-~~---~~~~~~w~ 364 (842)
....++ + +.+. ..+++...+......... +. +.+.+.+..+.|.. .+ ...+..|.
T Consensus 407 ~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~ 486 (567)
T PLN02612 407 YDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYH 486 (567)
T ss_pred CCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEE
Confidence 100000 0 0000 012233343333321111 11 11122223333322 11 11122221
Q ss_pred c-CCC--CCCHHHHHHHHhhhhhcCCCCeEEeccccCCC---CCchhHhHHHHHHHHhcCCc
Q 035870 365 T-GHP--VPSVAASKASLELDHIQGKRGIWFCGAYQGYG---FHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 365 ~-~~p--~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G---~~e~A~~SG~~aA~~Il~~~ 420 (842)
. ..| .|...+.....++...+|.+||||||||+..+ .+|+|+.||++||++|+...
T Consensus 487 ~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 487 VVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred EeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 111 11110001112233356789999999999654 34999999999999998653
No 12
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=303.24 Aligned_cols=395 Identities=18% Similarity=0.215 Sum_probs=253.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDMS 81 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~~ 81 (842)
+|+|||||+|||+||++|+++|++|+|||+++++||+++|.+.+|+.+|.|.|++. ..++++.++++++|+........
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~-~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIF-KSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhc-cccHHHHHHHHHcCCCCceeecc
Confidence 69999999999999999999999999999999999999999999999999999985 46889999999999875532111
Q ss_pred -eeEeccCCCceeeCCCCCCcchhhhhh-ccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCH
Q 035870 82 -FSVSLEKGHGCEWGSRNGLSSLFAQKK-NVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSE 159 (842)
Q Consensus 82 -~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (842)
....+.++..+.+.+ ...... ..+.. .+..++....... ... ......+..|+++|+.++ .++
T Consensus 80 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~-~~~~~~~~~s~~~~l~~~-~~~ 144 (434)
T PRK07233 80 TKTGYYVDGKLYPLGT------PLELLRFPHLSL------IDKFRLGLLTLLA-RRI-KDWRALDKVPAEEWLRRW-SGE 144 (434)
T ss_pred CceEEEECCeEecCCC------HHHHHcCCCCCH------HHHHHhHHHHHhh-hhc-ccccccccccHHHHHHHh-cCH
Confidence 111112222222111 110000 00110 0111111101100 000 111112578999999987 567
Q ss_pred HHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccC-CCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCe
Q 035870 160 LFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLF-GRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238 (842)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V 238 (842)
...+.++.|++..+++.+++++ |+..++..+......... ....+.+++||++.++++|++.+++.|++|+++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 145 GVYEVFWEPLLESKFGDYADDV---SAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred HHHHHHHHHHHhcccCCCcccc---CHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCe
Confidence 7778899999999999999887 555555444322111100 123477899999999999999999999999999999
Q ss_pred eEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecCCCCcC-------CC
Q 035870 239 CSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRDKRFMP-------QN 310 (842)
Q Consensus 239 ~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p-------~~ 310 (842)
++|+.+++++.+.+.+|+++.||+||+|+|+..+.+++++ .++...+.+.++.|.+ ..+++.++.++.+ ..
T Consensus 222 ~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 300 (434)
T PRK07233 222 TSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNINDP 300 (434)
T ss_pred eEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEEEEecCCCCCCceeeecCC
Confidence 9999988888666667778999999999999999998865 4555667788888877 4667888776421 11
Q ss_pred CCCccee----eecc--cCCCceEE--EEEcccccC--------CCCCCCCeEEecCCCCCC----cceeEEEEcCCCCC
Q 035870 311 PAAWSAW----NFLE--SFDSKVCL--TYWLNVLQN--------LGETSLPFLVTLNPDHVP----EHTLLKWSTGHPVP 370 (842)
Q Consensus 311 ~~~~~~~----~~~~--~~~~~~~v--~~~~~~l~~--------l~~~~~~~~~~l~~~~~~----~~~~~~w~~~~p~~ 370 (842)
...+... ++.. .++++.++ ..+...-.. +.+.+.+.+..+.|...+ ...+.+|.++.|.+
T Consensus 301 ~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~ 380 (434)
T PRK07233 301 GAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIY 380 (434)
T ss_pred CCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccc
Confidence 1111111 1111 11333332 333321111 111112222333332211 12445778888887
Q ss_pred CHHHHHHHHhhhhhcCCCCeEEecccc-C---CCCCchhHhHHHHHHHHhcCC
Q 035870 371 SVAASKASLELDHIQGKRGIWFCGAYQ-G---YGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~aG~~~-g---~G~~e~A~~SG~~aA~~Il~~ 419 (842)
.++.....+.+ .++.+||||||+++ . .++ ++|+.||.+||++|+..
T Consensus 381 ~~g~~~~~~~~--~~~~~~l~~aG~~~~~~~~~~~-~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 381 EPGYLDKIPPY--DTPIEGLYLAGMSQIYPEDRSI-NGSVRAGRRVAREILED 430 (434)
T ss_pred cCchhhcCCCc--ccCcCCEEEeCCcccCCccCch-hHHHHHHHHHHHHHhhh
Confidence 76643322222 34678999999943 1 244 99999999999999764
No 13
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-31 Score=303.76 Aligned_cols=401 Identities=17% Similarity=0.246 Sum_probs=259.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccccc-
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD- 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~- 79 (842)
+||+|||||+|||+||++|+++|++|+|+|+++++||++.|...+|+.+|.|+|++. ..++.+.+++++++.......
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~-~~~~~~~~l~~~l~~~~~~~~~ 83 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFF-SKSPEVMDLWNEILPDDDFLLR 83 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceec-cCCHHHHHHHHHhcCCCccccc
Confidence 589999999999999999999999999999999999999999999999999999995 478899999999986322211
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCH
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSE 159 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (842)
......+.+|+.+.++. .....+ . .+.. .... + ...+++...... ..+++|+++|+.++ +++
T Consensus 84 ~~~~~~~~~g~~~~~p~--~~~~~l---~-~~~~--~~~~----~---~~~~~~~~~~~~--~~~~~s~~e~l~~~-~g~ 145 (479)
T PRK07208 84 PRLSRIYYRGKFFDYPL--KAFDAL---K-NLGL--WRTA----K---CGASYLKARLRP--RKEEDSFEDWVINR-FGR 145 (479)
T ss_pred cccceEEECCEEecCCc--chhHHH---H-hCCH--hHHH----H---HHHHHHHHhcCC--CCCCCCHHHHHHHh-hCH
Confidence 11111222333322211 000000 0 0010 0011 1 111112111111 12679999999986 788
Q ss_pred HHHHHHHHHhhhcccCCCchhhccCC---------HHHHHH-HHhhc-c------ccccCCCCceEEecCChhHHHHHHH
Q 035870 160 LFQKAYLIPICGSIWSCPSEGVTSFS---------AFSVLS-FCRNH-H------LLQLFGRPQWLTVRWRSHSYVNKVR 222 (842)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~---------~~~~~~-~~~~~-~------~~~~~~~~~~~~~~gG~~~l~~~L~ 222 (842)
.+.+.++.|++.++|+.++++++..- ....+. .+... . .........+.+++||++.++++|+
T Consensus 146 ~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~ 225 (479)
T PRK07208 146 RLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAA 225 (479)
T ss_pred HHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHH
Confidence 99999999999999999999985431 111111 11110 0 0000011356778999999999999
Q ss_pred HHhhhcCceEEeCCCeeEEEeCCCcE--EEEe--CCCc--EEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-
Q 035870 223 KQLESWGCQIRTSSEVCSVLPADKGC--TIVC--GDGS--REFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY- 295 (842)
Q Consensus 223 ~~l~~~G~~i~~~~~V~~I~~~~~~v--~V~~--~~G~--~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~- 295 (842)
+.+++.|++|++|++|++|..+++++ .++. .+|+ ++.||+||+|+|+..+.+++.+.+++...+.+..++|.+
T Consensus 226 ~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 226 EKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred HHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCccee
Confidence 99999999999999999999988763 2332 2453 589999999999999998887656666677788888888
Q ss_pred ceEEEecCCCCc-CCC-------CCC------cceeeecccCCCc-eEEE--EEccc---ccCCCC-----CCCCeEEec
Q 035870 296 SDIFLHRDKRFM-PQN-------PAA------WSAWNFLESFDSK-VCLT--YWLNV---LQNLGE-----TSLPFLVTL 350 (842)
Q Consensus 296 ~~v~l~~~~~~~-p~~-------~~~------~~~~~~~~~~~~~-~~v~--~~~~~---l~~l~~-----~~~~~~~~l 350 (842)
.++++.++.+.. |.. ... +..|.....|++. ..+. ++... +..+.+ ...+.+..+
T Consensus 306 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l 385 (479)
T PRK07208 306 ITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL 385 (479)
T ss_pred EEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc
Confidence 577788876522 211 100 1112211123333 2221 21111 111111 111222233
Q ss_pred CCCCC--Ccc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEeccccCCCCC--chhHhHHHHHHHHhcCCc
Q 035870 351 NPDHV--PEH-TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQGYGFH--EDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 351 ~~~~~--~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~g~G~~--e~A~~SG~~aA~~Il~~~ 420 (842)
++... +.. .+.+|.+++|.|..++......+.+ .++.+||++||+|....+. ++|+.||.++|+.|++..
T Consensus 386 ~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 386 GLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred CCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 33211 222 4568899999999999888777664 4567899999986544332 999999999999997753
No 14
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.3e-31 Score=302.34 Aligned_cols=413 Identities=15% Similarity=0.163 Sum_probs=261.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-eCCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
|+|+|||||++||++|+.|+++|++|+|+|+++++||+++|+. .+|+.+|.|.|++. +.++++.++++++|+......
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~-~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFF-GCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEec-CCcHHHHHHHHhcCCcccccc
Confidence 4899999999999999999999999999999999999999996 47899999999995 478999999999999866432
Q ss_pred c-eeeEe-ccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHH--HHHHHhh------cCCCCCCccccHH
Q 035870 80 M-SFSVS-LEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDV--LGYLEEL------ESNPDIDRSETLG 149 (842)
Q Consensus 80 ~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~s~~ 149 (842)
. ..... ..++..........+...+......+....+.. .+.++..... ....... .......+++|+.
T Consensus 155 ~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~-~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~ 233 (569)
T PLN02487 155 KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEP-YDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFS 233 (569)
T ss_pred cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCH-HHHHhhcccccccchhhhccCccccccccccccCCcHH
Confidence 1 11111 122222111100011111100000000000000 0001000000 0000000 0011123679999
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhH-HHHHHHHHhhhc
Q 035870 150 QFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHS-YVNKVRKQLESW 228 (842)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~L~~~l~~~ 228 (842)
+|+++++.++...+.+++|++.+.++.++++++...+..++.++... .......+++||+.. +++++++.|+++
T Consensus 234 ~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~-----~~~~~l~~~~Gg~~~~l~~pl~~~L~~~ 308 (569)
T PLN02487 234 DWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATK-----TEASLLRMLKGSPDVRLSGPIAKYITDR 308 (569)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhc-----CCcceeeecCCCchHHHHHHHHHHHHHc
Confidence 99999988888899999999999999999999554444444332211 112446788999995 999999999999
Q ss_pred CceEEeCCCeeEEEeCC--Cc----EEEEe---CCCcEEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ce
Q 035870 229 GCQIRTSSEVCSVLPAD--KG----CTIVC---GDGSREFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SD 297 (842)
Q Consensus 229 G~~i~~~~~V~~I~~~~--~~----v~V~~---~~G~~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~ 297 (842)
|++|+++++|++|..++ ++ +.|++ .+++++.+|.||+|+|.+.+.+|+++.+. .+..+.+..+.+.+ .+
T Consensus 309 Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~t 388 (569)
T PLN02487 309 GGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVT 388 (569)
T ss_pred CCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEE
Confidence 99999999999999873 22 35565 34456899999999999999999987422 23366777787777 57
Q ss_pred EEEecCCCCcCCC--------------CCCc----ceeeeccc-----------CCCceEEEEEcccccC---CC-----
Q 035870 298 IFLHRDKRFMPQN--------------PAAW----SAWNFLES-----------FDSKVCLTYWLNVLQN---LG----- 340 (842)
Q Consensus 298 v~l~~~~~~~p~~--------------~~~~----~~~~~~~~-----------~~~~~~v~~~~~~l~~---l~----- 340 (842)
++|.||.++.... ...| ..|.+... ......+..++..... +.
T Consensus 389 v~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~ 468 (569)
T PLN02487 389 VQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIV 468 (569)
T ss_pred EEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHH
Confidence 8899987543211 1111 12333100 1112333433332111 11
Q ss_pred CCCCCeEEecCCCCCCcce--eEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCC---chhHhHHHHHHHH
Q 035870 341 ETSLPFLVTLNPDHVPEHT--LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFH---EDGLKAGMTAAHG 415 (842)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~--~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~---e~A~~SG~~aA~~ 415 (842)
+.+.+.+..+.|......+ ........+.|...+.....++...++.+|||+||||+..+++ |+|++||.+||+.
T Consensus 469 ~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~ 548 (569)
T PLN02487 469 EKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAY 548 (569)
T ss_pred HHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHH
Confidence 1112233334444322222 2244556777776665555556678889999999999988887 9999999999999
Q ss_pred hcCCc
Q 035870 416 VLGKS 420 (842)
Q Consensus 416 Il~~~ 420 (842)
|+...
T Consensus 549 i~~~~ 553 (569)
T PLN02487 549 ICEAG 553 (569)
T ss_pred HHHHh
Confidence 98654
No 15
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.5e-31 Score=300.98 Aligned_cols=407 Identities=15% Similarity=0.183 Sum_probs=249.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-eCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|+. .+|+.+|.|+|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~-~~~~~~~~~~~~lg~~~~~~~~ 79 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFF-GCYANLFRLMKKVGAEDNLLLK 79 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEec-CchHHHHHHHHHcCCccccccc
Confidence 689999999999999999999999999999999999999974 57999999999996 4789999999999998654322
Q ss_pred eee--EeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHH--HHHHHhh---c---CCCCCCccccHHH
Q 035870 81 SFS--VSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDV--LGYLEEL---E---SNPDIDRSETLGQ 150 (842)
Q Consensus 81 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~---~~~~~~~~~s~~~ 150 (842)
... ....+++.........+...+......+...... ..+.+++.... ....... . ......+++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls-~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 158 (474)
T TIGR02732 80 EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLK-WVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAE 158 (474)
T ss_pred cceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCC-HHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHH
Confidence 111 1112232221111111111111111111100000 01111111000 0000000 0 0011125799999
Q ss_pred HHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhH-HHHHHHHHhhhcC
Q 035870 151 FVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHS-YVNKVRKQLESWG 229 (842)
Q Consensus 151 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~L~~~l~~~G 229 (842)
|+++++.++...+.++.|++.+.++.++++++...+..++..+... ........++||++. +.+.|.+.|+++|
T Consensus 159 ~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~-----~~~s~~~~~~g~~~~~l~~pl~~~L~~~G 233 (474)
T TIGR02732 159 WFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAK-----TEASKLRMLKGSPDKYLTKPILEYIEARG 233 (474)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----CCcceeeeecCCcchhHHHHHHHHHHHCC
Confidence 9999988888899999999999999999998544443333333321 122456667788776 6677999999999
Q ss_pred ceEEeCCCeeEEEeCC--Cc---E-EEEeCCC---cEEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ceE
Q 035870 230 CQIRTSSEVCSVLPAD--KG---C-TIVCGDG---SREFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SDI 298 (842)
Q Consensus 230 ~~i~~~~~V~~I~~~~--~~---v-~V~~~~G---~~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~v 298 (842)
++|+++++|++|+.++ ++ + .|++.+| +++.||+||+|+|++.+.+|+++... ......+..+++.+ ..+
T Consensus 234 g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v 313 (474)
T TIGR02732 234 GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATV 313 (474)
T ss_pred CEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEE
Confidence 9999999999999864 22 2 3445443 46899999999999999999986321 23566777888877 477
Q ss_pred EEecCCCCcCCC-------------CC--Cc---ceeeecc-----------cCCCceEEEEEccc---ccCC-----CC
Q 035870 299 FLHRDKRFMPQN-------------PA--AW---SAWNFLE-----------SFDSKVCLTYWLNV---LQNL-----GE 341 (842)
Q Consensus 299 ~l~~~~~~~p~~-------------~~--~~---~~~~~~~-----------~~~~~~~v~~~~~~---l~~l-----~~ 341 (842)
++.++.++.... -. .+ ..|.+.. .+.....+...+.. +..+ .+
T Consensus 314 ~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 393 (474)
T TIGR02732 314 QLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAK 393 (474)
T ss_pred EEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHH
Confidence 889886432110 00 01 1223310 01112223222221 1111 11
Q ss_pred CCCCeEEecCCCCCCcceeE--EEEcCCCCCC--HHHHHHHHhhhhhcCCCCeEEeccccCCCCC---chhHhHHHHHHH
Q 035870 342 TSLPFLVTLNPDHVPEHTLL--KWSTGHPVPS--VAASKASLELDHIQGKRGIWFCGAYQGYGFH---EDGLKAGMTAAH 414 (842)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~--~w~~~~p~~~--~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~---e~A~~SG~~aA~ 414 (842)
.+.+.+..+.|......++. ......+.|. ++. ...++...++.+|||+||||+..+++ |+|+.||.+||+
T Consensus 394 ~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~--~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~ 471 (474)
T TIGR02732 394 RVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGM--DPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAA 471 (474)
T ss_pred HHHHHHHHhCccccCCceeEEEEEEecCceeccCCCC--cccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHH
Confidence 12233334444322222222 3333444444 433 22345557788999999999988776 999999999999
Q ss_pred Hhc
Q 035870 415 GVL 417 (842)
Q Consensus 415 ~Il 417 (842)
.||
T Consensus 472 ~i~ 474 (474)
T TIGR02732 472 AIL 474 (474)
T ss_pred HhC
Confidence 875
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.98 E-value=5.8e-31 Score=298.00 Aligned_cols=406 Identities=18% Similarity=0.217 Sum_probs=243.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-eCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+|+|||||++||+||++|+++|++|+|||+++++||+++|.. .+|+.+|.|.|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~-~~~~~~~~l~~~lg~~~~~~~~ 79 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNMLQLLKELNIEDRLQWK 79 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceec-cCCchHHHHHHHcCCccceeec
Confidence 599999999999999999999999999999999999999985 47899999999996 5789999999999987543321
Q ss_pred eeeEec----cCCCceeeCCCCCCcchhhhhhccCC-hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhc
Q 035870 81 SFSVSL----EKGHGCEWGSRNGLSSLFAQKKNVLN-PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSR 155 (842)
Q Consensus 81 ~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (842)
.....+ .++.......+ .++.........+. ..... ..+..++..................+++|+.+|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 157 (453)
T TIGR02731 80 SHSMIFNQPDKPGTFSRFDFP-DIPAPFNGVAAILRNNDMLT-WPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQ 157 (453)
T ss_pred CCceEEecCCCCcceeeccCC-CCCCCHHHHHHHhcCcCCCC-HHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHc
Confidence 111111 11111111110 01000000000000 00000 0011111111100000000111112689999999999
Q ss_pred CCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCC-hhHHHHHHHHHhhhcCceEEe
Q 035870 156 GYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR-SHSYVNKVRKQLESWGCQIRT 234 (842)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~L~~~l~~~G~~i~~ 234 (842)
++++.+.+.++.|++.++++.+++++ |+..++.++... +.. ..+.......|+ ++.++++|++.+++.|++|++
T Consensus 158 ~~~~~~~~~~~~pl~~~~~~~~p~~~---S~~~~~~~l~~~-~~~-~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l 232 (453)
T TIGR02731 158 GVPERVNDEVFIAMSKALNFINPDEL---SMTVVLTALNRF-LQE-RHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRL 232 (453)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHH-Hhc-CCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeC
Confidence 99999999999999999999999887 555544443320 000 011112223343 578999999999999999999
Q ss_pred CCCeeEEEeCCCc-E-EEEeCCCc-----EEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ceEEEecCCC
Q 035870 235 SSEVCSVLPADKG-C-TIVCGDGS-----REFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SDIFLHRDKR 305 (842)
Q Consensus 235 ~~~V~~I~~~~~~-v-~V~~~~G~-----~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~v~l~~~~~ 305 (842)
|++|++|..++++ + .|++.+|+ ++.||.||+|+|++.+.++++...+ ....+.+.++++.+ .++++.++.+
T Consensus 233 ~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 312 (453)
T TIGR02731 233 NSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRK 312 (453)
T ss_pred CCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccc
Confidence 9999999875554 4 56676655 7899999999999999999865332 34456677777766 5788888887
Q ss_pred CcCCCCCC------------cceeeecccCCCceEEEEEcccccC---CCC-----CCCCeEEecCCCC----CCcc-ee
Q 035870 306 FMPQNPAA------------WSAWNFLESFDSKVCLTYWLNVLQN---LGE-----TSLPFLVTLNPDH----VPEH-TL 360 (842)
Q Consensus 306 ~~p~~~~~------------~~~~~~~~~~~~~~~v~~~~~~l~~---l~~-----~~~~~~~~l~~~~----~~~~-~~ 360 (842)
+.+..... |+...+...+++..++.++...... +.+ .+.+.+..+.|.. .+.. +.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~ 392 (453)
T TIGR02731 313 LTTVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILK 392 (453)
T ss_pred cCCCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEE
Confidence 65332100 0011111123334555554432211 111 1112222233221 1222 33
Q ss_pred EEEE---cCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCC---CCCchhHhHHHHHHHHhc
Q 035870 361 LKWS---TGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGY---GFHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 361 ~~w~---~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~---G~~e~A~~SG~~aA~~Il 417 (842)
..|. ++.+.+.++.. .......++.+||||||+|+.. |.+|+|+.||.+||++|.
T Consensus 393 ~~~~~~p~a~~~~~pg~~--~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 393 YKVVKTPRSVYKTTPGRQ--QYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEEEECCCceeccCCCCh--hhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 3442 23222223211 1122225678999999998844 445999999999999873
No 17
>PLN02529 lysine-specific histone demethylase 1
Probab=99.97 E-value=7e-30 Score=293.29 Aligned_cols=385 Identities=14% Similarity=0.149 Sum_probs=233.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC--C--eeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--G--VDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||||++||+||..|+++|++|+|||+++++||++.|...+ | ..+|+|++|+++.....+..+.+++|++..
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~ 240 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH 240 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence 589999999999999999999999999999999999999999874 3 489999999976444447789999999876
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
.......++..+|..+.... . ..+...+...+..+. .+..... ...++.|+++|+.+..
T Consensus 241 ~~~~~~~~~~~~G~~v~~~~--------~---~~~~~~~~~~l~~~~-------~l~~~~~---~~~~d~Sl~~~le~~~ 299 (738)
T PLN02529 241 KVRDNCPLYKPDGALVDKEI--------D---SNIEFIFNKLLDKVT-------ELRQIMG---GFANDISLGSVLERLR 299 (738)
T ss_pred ccCCCceEEeCCCcCcchhh--------h---hhHHHHHHHHHHHHH-------HHHHhcc---cCccCCCHHHHHHHHH
Confidence 55433334334443321110 0 000000111111111 1111111 1226889999997542
Q ss_pred ------CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCc
Q 035870 157 ------YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGC 230 (842)
Q Consensus 157 ------~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~ 230 (842)
.++. ...++.-....+....+..++.+++. .+..... ....+..+.+.||+++++++|++.+
T Consensus 300 ~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~---~~~~~~~---~e~~G~~~~i~GG~~~Li~aLA~~L----- 367 (738)
T PLN02529 300 QLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAA---YWDQDDP---YEMGGDHCFLAGGNWRLINALCEGV----- 367 (738)
T ss_pred hhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhh---Hhhhccc---cccCCceEEECCcHHHHHHHHHhcC-----
Confidence 2222 22333333333333334444333332 2222111 1223557889999999999999865
Q ss_pred eEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh---hcCCCChHHHHhccccceee-ceEEEecCCCC
Q 035870 231 QIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI---LGNQATFDETRILGAFQYVY-SDIFLHRDKRF 306 (842)
Q Consensus 231 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~ 306 (842)
.|++|++|++|.+++++|.|++. ++++.||+||+|+|+.++++. +.|++++...+++.+++|++ .++++.|+.++
T Consensus 368 ~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 368 PIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred CEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 69999999999999999999864 458999999999999999843 45557777889999999999 79999999999
Q ss_pred cCCCCCCc-------------ce-eeecccCCCceEEEEEcccc----cCCCC-----CCCCeEEec-CCC--C--CCcc
Q 035870 307 MPQNPAAW-------------SA-WNFLESFDSKVCLTYWLNVL----QNLGE-----TSLPFLVTL-NPD--H--VPEH 358 (842)
Q Consensus 307 ~p~~~~~~-------------~~-~~~~~~~~~~~~v~~~~~~l----~~l~~-----~~~~~~~~l-~~~--~--~~~~ 358 (842)
|+.....+ .. +++...+++..++.+..+.. ..+.+ .+...+..+ ++. . .|..
T Consensus 447 W~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~ 526 (738)
T PLN02529 447 WGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQ 526 (738)
T ss_pred ccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceE
Confidence 96642111 00 11111123333333332211 11111 011122222 221 1 2222
Q ss_pred -eeEEEEc---CCCCCC---HHHHHHHHhhhhhcCCCCeEEeccccCC---CCCchhHhHHHHHHHHhcCC
Q 035870 359 -TLLKWST---GHPVPS---VAASKASLELDHIQGKRGIWFCGAYQGY---GFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 359 -~~~~w~~---~~p~~~---~~~~~~~~~~~~~~~~~~l~~aG~~~g~---G~~e~A~~SG~~aA~~Il~~ 419 (842)
+.++|.. ....|. ++...........+..++|||||+++.. |++|||+.||.++|++|+..
T Consensus 527 ~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~ 597 (738)
T PLN02529 527 TICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHV 597 (738)
T ss_pred EEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHH
Confidence 5568863 222222 1111111111112224799999998744 55699999999999999864
No 18
>PLN02568 polyamine oxidase
Probab=99.97 E-value=2e-29 Score=285.19 Aligned_cols=294 Identities=14% Similarity=0.156 Sum_probs=191.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-----CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG-----VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDM 75 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-----~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~ 75 (842)
+||+|||||+|||+||++|++.| ++|+|||+++++||+++|.+..|+.+|.|++++++...+.+.++++++|+..
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~ 85 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLE 85 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCcc
Confidence 47999999999999999999887 8999999999999999999999999999999998655667779999999865
Q ss_pred ccccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHh-hhHHHHHH---------------HHhhcCC
Q 035870 76 EMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIK-FKDDVLGY---------------LEELESN 139 (842)
Q Consensus 76 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~ 139 (842)
...+......+. +....+.. .+ ..+.+.....+.+... +....... .......
T Consensus 86 ~~~~~~~~~~~~-~~~~~~~~-~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (539)
T PLN02568 86 SDEPWECMDGFP-DRPKTVAE-GG---------FEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARV 154 (539)
T ss_pred ccCcceeccccc-ccceEEcc-CC---------cCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccch
Confidence 432110000000 00011110 00 0111111111111110 00000000 0000000
Q ss_pred CCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc-c-c-----ccc--C-----CCC
Q 035870 140 PDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH-H-L-----LQL--F-----GRP 205 (842)
Q Consensus 140 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~-----~~~--~-----~~~ 205 (842)
.....+.|+++|++++ +.+ +.+.+..|...+++......++..++...+..+... . + ... . ..+
T Consensus 155 ~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g 232 (539)
T PLN02568 155 CESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPG 232 (539)
T ss_pred hccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCC
Confidence 0011245899998875 332 334445565566666555544322222221111100 0 0 000 0 123
Q ss_pred ceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH-------hhcC
Q 035870 206 QWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK-------ILGN 278 (842)
Q Consensus 206 ~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~-------ll~~ 278 (842)
..+.++||+++|++.|++.++ +.+|++|++|++|.+++++|.|++.+|+++.||+||+|+|+.++++ .+.|
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P 310 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSP 310 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecC
Confidence 477899999999999999996 5679999999999999999999999998999999999999999985 3666
Q ss_pred CCChHHHHhccccceee-ceEEEecCCCCcCC
Q 035870 279 QATFDETRILGAFQYVY-SDIFLHRDKRFMPQ 309 (842)
Q Consensus 279 ~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~ 309 (842)
+++....+++..++|+. +++++.|+.++|+.
T Consensus 311 ~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~ 342 (539)
T PLN02568 311 PLPDFKTDAISRLGFGVVNKLFVELSPRPDGS 342 (539)
T ss_pred CCCHHHHHHHHhcCCceeeEEEEEecCCCCCc
Confidence 67777889999999988 79999999998864
No 19
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.97 E-value=8.2e-29 Score=285.26 Aligned_cols=386 Identities=17% Similarity=0.193 Sum_probs=229.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCe----eeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV----DLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~----~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||||++||+||+.|++.|++|+|+|+++++||++.|....|. .+|+|++|+++.....+..+++++|+...
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~ 318 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH 318 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence 58999999999999999999999999999999999999999988653 68999999976544456789999998766
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhc-
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSR- 155 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 155 (842)
.......+++.+|..+.... ... ....+...+....++. ... . ......+.|++++++..
T Consensus 319 ~~~~~~~~~~~dG~~~~~~~--------~~~---v~~~f~~lL~~~~klr----~~~---~-~~~~~~D~SLg~~le~~~ 379 (808)
T PLN02328 319 KVRDICPLYLPDGKAVDAEI--------DSK---IEASFNKLLDRVCKLR----QAM---I-EEVKSVDVNLGTALEAFR 379 (808)
T ss_pred ecCCCceEEeCCCcCcchhh--------hhh---HHHHHHHHHHHHHHHH----Hhh---h-hcccccCcCHHHHHHHHh
Confidence 54433333334443221110 000 0011111111111110 000 0 00111467899988632
Q ss_pred -----CCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCc
Q 035870 156 -----GYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGC 230 (842)
Q Consensus 156 -----~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~ 230 (842)
...+. ...++.+.+..........+..++ +..+.... .....+.++.++||+++|+++|++.+
T Consensus 380 ~~~~~~~~~~-e~~Ll~w~lanlE~~~gs~ls~LS---l~~w~qd~---~~e~~G~~~~v~GG~~~Li~aLa~~L----- 447 (808)
T PLN02328 380 HVYKVAEDPQ-ERMLLNWHLANLEYANASLMSNLS---MAYWDQDD---PYEMGGDHCFIPGGNDTFVRELAKDL----- 447 (808)
T ss_pred hhhccCCCHH-HHHHHHHHHHHHhccchhhHHHHH---hhhhhccc---cccCCCeEEEECCcHHHHHHHHHhhC-----
Confidence 11211 123333333222111112221111 11111110 01123457889999999999999987
Q ss_pred eEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH--h-hcCCCChHHHHhccccceee-ceEEEecCCCC
Q 035870 231 QIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRILGAFQYVY-SDIFLHRDKRF 306 (842)
Q Consensus 231 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~ 306 (842)
.|++|++|++|.+.+++|.| +.+|+++.||+||+|+|+.++.+ + +.++++....+++.++.|+. .++++.|+.++
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~F 526 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNF 526 (808)
T ss_pred CcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 49999999999999999988 45677899999999999999984 2 44557778889999999999 79999999999
Q ss_pred cCCCCCCcc--------------eeeecccCCCceEEEEEcccc-----cCCCCC-----CCCeEEec-CCC----CCCc
Q 035870 307 MPQNPAAWS--------------AWNFLESFDSKVCLTYWLNVL-----QNLGET-----SLPFLVTL-NPD----HVPE 357 (842)
Q Consensus 307 ~p~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~l-----~~l~~~-----~~~~~~~l-~~~----~~~~ 357 (842)
|+.....+. .+++.. ..+..++..++... ..+.+. +...+..+ ++. ..|.
T Consensus 527 W~~~~d~fG~l~~d~s~rG~~~lf~s~s~-~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~ 605 (808)
T PLN02328 527 WGGEIDTFGHLTEDPSMRGEFFLFYSYSS-VSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPV 605 (808)
T ss_pred ccCCCCceEEEeecCCCCceEEEEecCCC-CCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcc
Confidence 875422110 011211 12233444443321 111110 11122222 221 1232
Q ss_pred c-eeEEEEc------CCCCCCHHHHH-HHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcCC
Q 035870 358 H-TLLKWST------GHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 358 ~-~~~~w~~------~~p~~~~~~~~-~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~~ 419 (842)
. ++++|.. ++..+.++... ....+.+.-+.++|||||+++. .|+++||+.||.++|++|+..
T Consensus 606 ~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~ 678 (808)
T PLN02328 606 QAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRV 678 (808)
T ss_pred eEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHH
Confidence 2 6668863 22222222211 1112221112469999999764 456799999999999999864
No 20
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.97 E-value=4.2e-29 Score=255.60 Aligned_cols=400 Identities=20% Similarity=0.258 Sum_probs=267.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeE--EEEecCCCCCCCcee-EeeCCeeeecceEeecCCCc--hhHHHHHHHcCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEV--VLYEKDDYLGGHAKT-VTFDGVDLDLGFMVFNRVTY--PNMMEFFESLGVDM 75 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V--~VlEa~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~--~~~~~l~~~lGl~~ 75 (842)
|+|+|||||+|||+|||+|++.+-+| +|+|+.+|+||+++| ...+|+.+|.|++.+.+... -.+.+++.++|++.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~ 91 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLED 91 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccc
Confidence 68999999999999999999997655 569999999999999 44589999999999965332 25779999999988
Q ss_pred ccccceeeEe-------ccCCCceeeCCCCCCcc-hhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCcccc
Q 035870 76 EMSDMSFSVS-------LEKGHGCEWGSRNGLSS-LFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSET 147 (842)
Q Consensus 76 ~~~~~~~~~~-------~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 147 (842)
+....+.... +..++....+. .+.. ++.......++.++.++.+. ++... .....++|
T Consensus 92 e~~~i~~~~paaknr~l~~~~~L~~vP~--sl~~s~~~~l~p~~k~L~~a~l~e~----------fr~~~--~~~~~dES 157 (491)
T KOG1276|consen 92 ELQPIDISHPAAKNRFLYVPGKLPTVPS--SLVGSLKFSLQPFGKPLLEAFLREL----------FRKKV--SDPSADES 157 (491)
T ss_pred eeeecCCCChhhhheeeccCcccccCCc--ccccccccccCcccchhHHHHHhhh----------ccccC--CCCCcccc
Confidence 7765543322 12222222111 1111 11111111122222222211 11111 22236899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccc-------c-----------------c-cC
Q 035870 148 LGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHL-------L-----------------Q-LF 202 (842)
Q Consensus 148 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~-----------------~-~~ 202 (842)
+++|++++ +++++.+.++.|++.++|+.++.+++..+++..++.....+- . + ..
T Consensus 158 V~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~ 236 (491)
T KOG1276|consen 158 VESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKK 236 (491)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcc
Confidence 99999998 789999999999999999999999965555544444433210 0 0 11
Q ss_pred CCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEe--CCCc-EEeCCEEEEccChHHHHHhhcC
Q 035870 203 GRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVC--GDGS-REFYNSCVMALHAPDALKILGN 278 (842)
Q Consensus 203 ~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~--~~G~-~~~ad~VV~A~p~~~~~~ll~~ 278 (842)
..-..+.++||++.+.+++.+.|....+.|.++-++..+..... +|.+++ .++. ....++++.|+|+..+.+++++
T Consensus 237 e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~ 316 (491)
T KOG1276|consen 237 EKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRG 316 (491)
T ss_pred cccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccc
Confidence 22345778999999999999999888889999999998876554 465555 4453 3556677779999999999987
Q ss_pred CCChHHHHhccccceeec-eEEEecCCC-----------CcCCC--------CCCcceeeecccCC-CceEEEEEccccc
Q 035870 279 QATFDETRILGAFQYVYS-DIFLHRDKR-----------FMPQN--------PAAWSAWNFLESFD-SKVCLTYWLNVLQ 337 (842)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~-~v~l~~~~~-----------~~p~~--------~~~~~~~~~~~~~~-~~~~v~~~~~~l~ 337 (842)
..+....++.+++|.+. .|.+.|... ++|.. ...|++..|+...+ .++.+........
T Consensus 317 -~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~ 395 (491)
T KOG1276|consen 317 -LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGST 395 (491)
T ss_pred -cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccc
Confidence 56777899999999995 455666652 45521 12555555554322 2333332222222
Q ss_pred C--CC--------CCCCCeE-EecCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCC--CCeEEecc-ccCCCC
Q 035870 338 N--LG--------ETSLPFL-VTLNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH-IQGK--RGIWFCGA-YQGYGF 401 (842)
Q Consensus 338 ~--l~--------~~~~~~~-~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~--~~l~~aG~-~~g~G~ 401 (842)
+ +. +...+.+ ..|+....|.. .++-|..+.|+|++++.+.+..+.. .+.. .+|++||. |.|.++
T Consensus 396 n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~v 475 (491)
T KOG1276|consen 396 NTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSV 475 (491)
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCCh
Confidence 1 00 0011111 22444444554 4458888999999999998888877 4443 49999999 668888
Q ss_pred CchhHhHHHHHHHHhc
Q 035870 402 HEDGLKAGMTAAHGVL 417 (842)
Q Consensus 402 ~e~A~~SG~~aA~~Il 417 (842)
.+||.||+.+|.+++
T Consensus 476 -gdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 476 -GDCIESGRKTAVEVI 490 (491)
T ss_pred -hHHHHhhHHHHHhhc
Confidence 999999999998875
No 21
>PLN03000 amine oxidase
Probab=99.97 E-value=8.9e-28 Score=275.86 Aligned_cols=385 Identities=14% Similarity=0.136 Sum_probs=224.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC----CeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD----GVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||||++||+||+.|++.|++|+|+|+++++|||+.|.+.. |+.+|+|++|++......+..+++++|+...
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~ 264 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY 264 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence 479999999999999999999999999999999999999999874 5789999999976444345578899999865
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHh--
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNS-- 154 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-- 154 (842)
.......++..+|+.+.. ... ......+...+....++ .... . ....+.|++++++.
T Consensus 265 ~~~~~~~ly~~~Gk~v~~--------~~~---~~ve~~fn~lLd~~~~l----r~l~----~--~~~~D~SLg~aLe~~~ 323 (881)
T PLN03000 265 KVRDKCPLYRVDGKPVDP--------DVD---LKVEVAFNQLLDKASKL----RQLM----G--DVSMDVSLGAALETFR 323 (881)
T ss_pred ecCCCCeEEEeCCcCCch--------hhh---hhHHHHHHHHHHHHHHH----HHHh----c--ccCcCCcHHHHHHHHH
Confidence 433222222233332110 000 00000011111111000 0111 0 11135566654331
Q ss_pred ----cCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCc
Q 035870 155 ----RGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGC 230 (842)
Q Consensus 155 ----~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~ 230 (842)
..+.++. ..++.+.+..+.......+ +...+ .++.... .....+..+.++||+++|+++|++.+
T Consensus 324 ~~~g~~~t~e~-~~Ll~w~lanLE~~~as~l---s~LSl-~~wdqd~--~~e~~G~~~~v~GG~~~LieaLa~~L----- 391 (881)
T PLN03000 324 QVSGNDVATEE-MGLFNWHLANLEYANAGLV---SKLSL-AFWDQDD--PYDMGGDHCFLPGGNGRLVQALAENV----- 391 (881)
T ss_pred HHHcccCCHHH-HHHHHHHHHHHhcccccCH---HHHHH-HHhhhcc--cccCCCceEEeCCCHHHHHHHHHhhC-----
Confidence 1122211 1222222222211111112 11111 1111100 01123456789999999999999988
Q ss_pred eEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH---hhcCCCChHHHHhccccceee-ceEEEecCCCC
Q 035870 231 QIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK---ILGNQATFDETRILGAFQYVY-SDIFLHRDKRF 306 (842)
Q Consensus 231 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~ 306 (842)
.|+++++|++|++++++|.|++.+ +++.||+||+|+|+.++++ .+.|+++....+++.+++|+. .++++.|+.++
T Consensus 392 ~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~F 470 (881)
T PLN03000 392 PILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVF 470 (881)
T ss_pred CcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 499999999999999999998765 4899999999999999983 244557788899999999999 79999999999
Q ss_pred cCCCCCC-------------cce-eeecccCCCceEEEEEccc-----ccCCCCC-----CCCeEEecCC-C----CCCc
Q 035870 307 MPQNPAA-------------WSA-WNFLESFDSKVCLTYWLNV-----LQNLGET-----SLPFLVTLNP-D----HVPE 357 (842)
Q Consensus 307 ~p~~~~~-------------~~~-~~~~~~~~~~~~v~~~~~~-----l~~l~~~-----~~~~~~~l~~-~----~~~~ 357 (842)
|+.+... |.. +++. ...+..++..++.. +..+.+. +...+..+.+ . ..|.
T Consensus 471 W~~d~~~FG~l~~~~~~rg~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv 549 (881)
T PLN03000 471 WSTDLDTFGHLTEDPNYRGEFFLFYSYA-PVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPL 549 (881)
T ss_pred ccCCCCceeEEecCCCCCceeEEEeCCC-CCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCce
Confidence 9764211 111 1111 11233344444432 1111111 1122222221 1 1222
Q ss_pred c-eeEEEEc------CCCCCCHHHHH-HHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcCCc
Q 035870 358 H-TLLKWST------GHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 358 ~-~~~~w~~------~~p~~~~~~~~-~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
. ++++|.. ++..+.++... ....+.+.-+.++|||||+++. .|+++||+.||.++|++|+...
T Consensus 550 ~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l 623 (881)
T PLN03000 550 QTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSA 623 (881)
T ss_pred EEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 2 5568843 23333333222 1112221112358999999764 4667999999999999998643
No 22
>PLN02676 polyamine oxidase
Probab=99.96 E-value=1.2e-28 Score=277.45 Aligned_cols=388 Identities=17% Similarity=0.207 Sum_probs=228.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCCceeEeeCCeeeecceEeecC---CCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR---VTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~---~~~~~~~~l~~~lGl~~~ 76 (842)
.||+|||||++||+||++|+++|. +|+|||+++++||++.+....|+.+|.|++|++. ...+.+.++++++|+...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~ 106 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTF 106 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCcee
Confidence 389999999999999999999998 6999999999999999999999999999999953 234567799999999866
Q ss_pred cccce---eeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccH--HHH
Q 035870 77 MSDMS---FSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETL--GQF 151 (842)
Q Consensus 77 ~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~ 151 (842)
..... ..+...+|+.+ .. .. ...+......+.++.... ..... +...++.++ ..+
T Consensus 107 ~~~~~~~~~~~~~~~g~~~--------~~---~~----~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~s~~~~~~ 166 (487)
T PLN02676 107 YSDFDNLSSNIYKQDGGLY--------PK---KV----VQKSMKVADASDEFGENL---SISLS--AKKAVDISILTAQR 166 (487)
T ss_pred ecCccccceeEECCCCCCC--------CH---HH----HHHHHHHHHHHHHHHHHH---HHhhc--ccCCCCccHHHHHH
Confidence 43211 11111122211 00 00 011111122222211111 11000 111245555 344
Q ss_pred HHhcC-CCHHHHHHHHHHhhh-cccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEe--cCChhHHHHHHHHHhhh
Q 035870 152 VNSRG-YSELFQKAYLIPICG-SIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTV--RWRSHSYVNKVRKQLES 227 (842)
Q Consensus 152 l~~~~-~~~~~~~~~~~p~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gG~~~l~~~L~~~l~~ 227 (842)
+.... .... .....-+.. ..++.+++.+ |+..+.. .... ...+ +.-+.+ +||++++++.|++.+.+
T Consensus 167 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---S~~~~~~---~~~~-~~~g-~~~~~~~~~~G~~~l~~~La~~~~~ 236 (487)
T PLN02676 167 LFGQVPKTPL--EMVIDYYNYDYEFAEPPRVT---SLKNTEP---NPTF-VDFG-EDEYFVADPRGYESLVYYLAEQFLS 236 (487)
T ss_pred HHhhCCCCHH--HHHHHHHhccceeccCcccc---chhhcCc---cccc-ccCC-CceEEeecCCCHHHHHHHHHhhccc
Confidence 44331 1111 111111111 1245555554 3332211 0000 0111 222333 68999999999998754
Q ss_pred c------CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH--h-hcCCCChHHHHhccccceee-ce
Q 035870 228 W------GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRILGAFQYVY-SD 297 (842)
Q Consensus 228 ~------G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~~~~~~-~~ 297 (842)
. +.+|++|++|++|..++++|.|++.+|+++.||+||+|+|+.++.+ + +.|+++....+++++++++. .+
T Consensus 237 ~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~K 316 (487)
T PLN02676 237 TKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTK 316 (487)
T ss_pred ccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEE
Confidence 3 3579999999999999999999999998999999999999999985 3 45556777788999999988 79
Q ss_pred EEEecCCCCcCCCCC-C-----------cceee-eccc-CCCceEEEEEccc----ccCCCCC-----CCCeEEecCCCC
Q 035870 298 IFLHRDKRFMPQNPA-A-----------WSAWN-FLES-FDSKVCLTYWLNV----LQNLGET-----SLPFLVTLNPDH 354 (842)
Q Consensus 298 v~l~~~~~~~p~~~~-~-----------~~~~~-~~~~-~~~~~~v~~~~~~----l~~l~~~-----~~~~~~~l~~~~ 354 (842)
+++.|+.++|+.+.. . +..|. +... ++....+.+..+. +..+.+. +.+.+..+.+..
T Consensus 317 v~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~ 396 (487)
T PLN02676 317 IFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPN 396 (487)
T ss_pred EEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCC
Confidence 999999999986311 1 11121 1111 2223333333221 1112110 112222222211
Q ss_pred --CCcc-eeEEEEc------CCCCCCHHHHHHHHhhhhhcCCCCeEEecccc---CCCCCchhHhHHHHHHHHhcCC
Q 035870 355 --VPEH-TLLKWST------GHPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 355 --~~~~-~~~~w~~------~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
.|.. ..+.|.. ++..+.++....... .-.+|.++|||||+.+ ..|++|||+.||+++|++|+..
T Consensus 397 ~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~-~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~ 472 (487)
T PLN02676 397 IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFD-QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLEC 472 (487)
T ss_pred CCCcceEEecccCCCCCCCcccCCCCCCCChhHHH-HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHH
Confidence 1222 4447743 223233332221111 1135678999999966 4677799999999999999853
No 23
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=256.55 Aligned_cols=394 Identities=18% Similarity=0.151 Sum_probs=229.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
.||||||||+|||+||+.|++.|++|+|||+++++|||+.|.+..|...|.|.+++++ ..+.+..+++++|+...+...
T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~~fi~ 86 (450)
T COG1231 8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLEPFIR 86 (450)
T ss_pred CcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCCceec
Confidence 4899999999999999999999999999999999999999999989999999999987 777888999999999877533
Q ss_pred eeeEeccCCCceeeCCC-CCCcchhhhhhccCChHHHHHHHHHHhhhHHH--HHHHH-hhcCCCCCCccccHHHHHHhcC
Q 035870 81 SFSVSLEKGHGCEWGSR-NGLSSLFAQKKNVLNPYFWQMLREIIKFKDDV--LGYLE-ELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 81 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
.... ...|... ...+........ ........+.... ...+. .........+.+++.+| . .
T Consensus 87 ~g~~------~~~~~~~~~~~p~~~~~~~~-------d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~-~- 150 (450)
T COG1231 87 DGDN------VIGYVGSSKSTPKRSLTAAA-------DVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K-T- 150 (450)
T ss_pred cCcc------cccccccccccchhccchhh-------hhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h-h-
Confidence 1110 0111100 000000000000 0000000000000 00000 00000001145666777 1 1
Q ss_pred CCHHHHHHHHHHh-hhcccC-CCchhhccCCHHHHHHHHhh-ccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEE
Q 035870 157 YSELFQKAYLIPI-CGSIWS-CPSEGVTSFSAFSVLSFCRN-HHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIR 233 (842)
Q Consensus 157 ~~~~~~~~~~~p~-~~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~ 233 (842)
.+ .+.+-.+. ....++ .+..+............... ....+...+...+.+.|||+.+++++++.+ |..|.
T Consensus 151 ~~---~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql---~~~I~ 224 (450)
T COG1231 151 SS---LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQL---GTRIL 224 (450)
T ss_pred cc---ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHh---hceEE
Confidence 00 01111111 111222 22222211111111111111 111122333455555699999999999999 88999
Q ss_pred eCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh-hcCCCChHHHHhccccceee-ceEEEecCCCCcCCCC
Q 035870 234 TSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI-LGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNP 311 (842)
Q Consensus 234 ~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l-l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~ 311 (842)
++++|++|.+++++|+|++.+..++.+|.||||+|+..+.++ +.|.+++...+++..++|.+ +++.+.|+.++|.+..
T Consensus 225 ~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~ 304 (450)
T COG1231 225 LNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAG 304 (450)
T ss_pred ecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcc
Confidence 999999999999999999999458999999999999999987 45556777888889999999 7999999999997765
Q ss_pred CCcceee----------eccc--CCCceEE-EEEc-cc----ccCCCCC-----CCCeEEecCCCCC---Ccc-eeEEEE
Q 035870 312 AAWSAWN----------FLES--FDSKVCL-TYWL-NV----LQNLGET-----SLPFLVTLNPDHV---PEH-TLLKWS 364 (842)
Q Consensus 312 ~~~~~~~----------~~~~--~~~~~~v-~~~~-~~----l~~l~~~-----~~~~~~~l~~~~~---~~~-~~~~w~ 364 (842)
..+.+. ++.. .++..++ .++. .. +..+.+. ....+..+.+... .+. ....|.
T Consensus 305 -~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~ 383 (450)
T COG1231 305 -ILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWS 383 (450)
T ss_pred -cCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeeecc
Confidence 111111 1111 1333333 3222 21 1111111 0111222333211 122 344664
Q ss_pred c---CCCCCCHHHHHHHHhhhh--hcCCCCeEEec-ccc--CCCCCchhHhHHHHHHHHhcC
Q 035870 365 T---GHPVPSVAASKASLELDH--IQGKRGIWFCG-AYQ--GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 365 ~---~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG-~~~--g~G~~e~A~~SG~~aA~~Il~ 418 (842)
. ....+...++....+..+ ..+.++||||| +++ -.|+.|||+.||++||.+|..
T Consensus 384 ~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~ 445 (450)
T COG1231 384 KDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHA 445 (450)
T ss_pred cCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHH
Confidence 3 222122222222222222 45778999999 554 467789999999999999965
No 24
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.96 E-value=4.7e-28 Score=272.84 Aligned_cols=385 Identities=19% Similarity=0.241 Sum_probs=240.2
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCee--eecceEeecCCCchhHHHHHHHcCCCcccccc--eeeEeccCC
Q 035870 14 VSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD--LDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM--SFSVSLEKG 89 (842)
Q Consensus 14 saA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~--~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~--~~~~~~~~g 89 (842)
+||++|+++|++|+|||+++++||+++|...+|+. +|.|+|++. ..++++.++++++|++...... ...+...++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~-~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~ 79 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLL-GAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGG 79 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEE-cccHHHHHHHHHhCCchhhhcccCCcceecCCC
Confidence 58999999999999999999999999999998654 999999995 5788999999999998664311 111111222
Q ss_pred CceeeCCCCCCcchhhhh-----hccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCHHHHHH
Q 035870 90 HGCEWGSRNGLSSLFAQK-----KNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKA 164 (842)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~ 164 (842)
....+.. ..++..+... ...+++. ...++.+. ...... ......++.|+.+|++++++++.+.+.
T Consensus 80 ~~~~~~~-~~~~~p~~~~~~~~~~~~l~~~---~~~~~~~~---~~~~~~---~~~~~~~~~s~~~~l~~~~~~~~~~~~ 149 (419)
T TIGR03467 80 RLSRLRL-SRLPAPLHLARGLLRAPGLSWA---DKLALARA---LLALRR---TRFRALDDTTVGDWLQAAGQSERLIER 149 (419)
T ss_pred CceeecC-CCCCCCHHHHHHHhcCCCCCHH---HHHHHHHH---HHHHHh---cCccccCCCCHHHHHHHcCCCHHHHHH
Confidence 2111110 0111110000 0011111 11111111 111110 001123689999999999889899999
Q ss_pred HHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHH-HHHHHHhhhcCceEEeCCCeeEEEe
Q 035870 165 YLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYV-NKVRKQLESWGCQIRTSSEVCSVLP 243 (842)
Q Consensus 165 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~-~~L~~~l~~~G~~i~~~~~V~~I~~ 243 (842)
++.|++.++|+.+++++ |+..+...+... +........+.+++||+++++ +.|++.+++.|++|++|++|++|+.
T Consensus 150 ~~~p~~~~~~~~~~~~~---s~~~~~~~~~~~-~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~ 225 (419)
T TIGR03467 150 LWEPLLLSALNTPPERA---SAALAAKVLRDS-FLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA 225 (419)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHHHH-HhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE
Confidence 99999999999999988 444444443321 111112235788899988766 5599999888999999999999999
Q ss_pred CCCcEEEEe-CCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecCCCCc-CCCCC--C--cce
Q 035870 244 ADKGCTIVC-GDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRDKRFM-PQNPA--A--WSA 316 (842)
Q Consensus 244 ~~~~v~V~~-~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~-p~~~~--~--~~~ 316 (842)
++++|.++. .+|+++.||+||+|+|++++.++++. +...+.+.+++|.+ .++++.++.+++ +.... . ...
T Consensus 226 ~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 302 (419)
T TIGR03467 226 NAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQ 302 (419)
T ss_pred cCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCcee
Confidence 998865543 46778999999999999999999865 24566778889988 578899998875 32210 0 011
Q ss_pred eeeccc--CCCceEEEEEcccccCC---CC-----CCCCeEEecCCCC---CCcc-eeEEEEcCCCCCCHHHHHHHHhhh
Q 035870 317 WNFLES--FDSKVCLTYWLNVLQNL---GE-----TSLPFLVTLNPDH---VPEH-TLLKWSTGHPVPSVAASKASLELD 382 (842)
Q Consensus 317 ~~~~~~--~~~~~~v~~~~~~l~~l---~~-----~~~~~~~~l~~~~---~~~~-~~~~w~~~~p~~~~~~~~~~~~~~ 382 (842)
|.+... ++....+..++.....+ .+ .+.+.+..+.+.. .+.. .+.+|....+.+.++... .+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~ 380 (419)
T TIGR03467 303 WLFDRGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNR--LRPG 380 (419)
T ss_pred EEEECCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccc--cCCC
Confidence 333221 12223333333322211 11 0111112222221 1222 344665555555444321 1111
Q ss_pred hhcCCCCeEEeccccCCCC---CchhHhHHHHHHHHhcC
Q 035870 383 HIQGKRGIWFCGAYQGYGF---HEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 383 ~~~~~~~l~~aG~~~g~G~---~e~A~~SG~~aA~~Il~ 418 (842)
..++.++|||||||+..|+ +|+|+.||.++|++|+.
T Consensus 381 ~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 381 ARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 2456789999999887664 38999999999999863
No 25
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=2.3e-28 Score=255.02 Aligned_cols=391 Identities=17% Similarity=0.217 Sum_probs=234.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+|+|||||+|||+||.+|-+.| .+|+|||+++|+|||++|....+-.+|+|++|+|+.....+.++.++.|........
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~~~t 102 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLLEVT 102 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccceeccC
Confidence 7999999999999999999776 589999999999999999999877999999999976677788999999821111111
Q ss_pred eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC----
Q 035870 81 SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG---- 156 (842)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~---- 156 (842)
.... .+...... ........+...+.++... .....+ ...-..+..|+++++...-
T Consensus 103 g~~~--~~~~~~~~------------~g~~V~~~~~~~~~~~~~~---~~~~~r---~~~~~~~~~SvG~~ln~~~~~~~ 162 (498)
T KOG0685|consen 103 GPAY--VDNFHTRS------------NGEVVPEELLDELNEITVT---LSDKLR---EAEIAHDEGSVGEYLNSEFWDEL 162 (498)
T ss_pred Cccc--cceeEEEe------------cCccCcHHHHHHHHHHHHh---hhhhcc---cccccCccccHHHHHHHHHHHHh
Confidence 0000 00000000 1111122222333333221 111111 1001135678888887520
Q ss_pred -C------CHHHHHHHHHHhhhcccCCCc-hhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhc
Q 035870 157 -Y------SELFQKAYLIPICGSIWSCPS-EGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESW 228 (842)
Q Consensus 157 -~------~~~~~~~~~~p~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~ 228 (842)
. ...++..++..+....+.... +.++.++...+..|...++ .......+-|+..+.+-|++.+++.
T Consensus 163 ~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~g------e~~~~~~~kGy~~iL~~l~~~~p~~ 236 (498)
T KOG0685|consen 163 RGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPG------EELLIWNKKGYKRILKLLMAVIPAQ 236 (498)
T ss_pred ccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCc------hhhheechhHHHHHHHHHhccCCCc
Confidence 0 122344444444433333222 2333334444333332221 1134455678999999999988743
Q ss_pred C------ceEEeCCCeeEEEeCC-CcEEEEeCCCcEEeCCEEEEccChHHHHH----hhcCCCChHHHHhccccceee-c
Q 035870 229 G------CQIRTSSEVCSVLPAD-KGCTIVCGDGSREFYNSCVMALHAPDALK----ILGNQATFDETRILGAFQYVY-S 296 (842)
Q Consensus 229 G------~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~A~p~~~~~~----ll~~~~~~~~~~~l~~~~~~~-~ 296 (842)
. .+++++++|.+|..++ +.|.|++.||+.+.|||||||++..++++ ++.|++|..+.+++.++.+++ +
T Consensus 237 ~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~ 316 (498)
T KOG0685|consen 237 NIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVN 316 (498)
T ss_pred chhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccc
Confidence 2 3456669999999986 45999999999999999999999999887 788878889999999999999 6
Q ss_pred eEEEecCCCCcCCCC----CCcce-----------------eeecccCCCceEEEEEccccc-----CCCCC-----CCC
Q 035870 297 DIFLHRDKRFMPQNP----AAWSA-----------------WNFLESFDSKVCLTYWLNVLQ-----NLGET-----SLP 345 (842)
Q Consensus 297 ~v~l~~~~~~~p~~~----~~~~~-----------------~~~~~~~~~~~~v~~~~~~l~-----~l~~~-----~~~ 345 (842)
+++|.|..++||.+- ..|.. ..|......+.++..|+.... .+.+. +..
T Consensus 317 KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~ 396 (498)
T KOG0685|consen 317 KIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTK 396 (498)
T ss_pred eEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHH
Confidence 999999999999861 12211 111111112223333333211 12111 122
Q ss_pred eEEe-cC-CC-CCCcceeE-EEEc---CCCCCC---HHHH----HHHHhhhh---hcCCCCeEEeccccCCCCC---chh
Q 035870 346 FLVT-LN-PD-HVPEHTLL-KWST---GHPVPS---VAAS----KASLELDH---IQGKRGIWFCGAYQGYGFH---EDG 405 (842)
Q Consensus 346 ~~~~-l~-~~-~~~~~~~~-~w~~---~~p~~~---~~~~----~~~~~~~~---~~~~~~l~~aG~~~g~G~~---e~A 405 (842)
.|.. ++ +. ..|..+++ +|.. .+..|+ ++.. +....+.+ ..+.|.|.|||+.|+.-++ .||
T Consensus 397 ~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA 476 (498)
T KOG0685|consen 397 LLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGA 476 (498)
T ss_pred HHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhh
Confidence 2222 12 22 12444444 6732 222222 1111 12222222 2356899999998876655 999
Q ss_pred HhHHHHHHHHhcC
Q 035870 406 LKAGMTAAHGVLG 418 (842)
Q Consensus 406 ~~SG~~aA~~Il~ 418 (842)
+.||.|.|++|+.
T Consensus 477 ~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 477 VLSGWREADRLLE 489 (498)
T ss_pred HHhhHHHHHHHHH
Confidence 9999999999976
No 26
>PLN02976 amine oxidase
Probab=99.95 E-value=9.3e-27 Score=272.69 Aligned_cols=383 Identities=14% Similarity=0.171 Sum_probs=220.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCC-------chhHH-HHHHHc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVT-------YPNMM-EFFESL 71 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~-------~~~~~-~l~~~l 71 (842)
++|+|||||++||+||++|++.|++|+|||+++++||++.+... .|+.+|.|++++++.. .++.. .+++++
T Consensus 694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ql 773 (1713)
T PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQL 773 (1713)
T ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhc
Confidence 58999999999999999999999999999999999999999875 6889999999996532 12444 467889
Q ss_pred CCCcccccceeeE-eccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHH-HhhhHHHHHHHHhhcCCCCCCccccHH
Q 035870 72 GVDMEMSDMSFSV-SLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREI-IKFKDDVLGYLEELESNPDIDRSETLG 149 (842)
Q Consensus 72 Gl~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (842)
|+........... ....|..+ +......+... ..+......... .......++|++
T Consensus 774 Gl~l~~~~~~~~~yd~~~G~~V-------------------~~e~~~~v~~~fn~lld~~~~~~~---~~g~~a~d~SLg 831 (1713)
T PLN02976 774 GLELTVLNSDCPLYDVVTGEKV-------------------PADLDEALEAEYNSLLDDMVLLVA---QKGEHAMKMSLE 831 (1713)
T ss_pred CCccccccCCCceeEccCCcCC-------------------CHHHHHHHHHHHHHHHHHHHHHHh---hcccCccCCCHH
Confidence 9886554322111 11122211 11111111111 111111100000 000011355666
Q ss_pred HHHHhcCC-------C-----------------------------HHHHHHHHH--------Hhhhcc-c--CCCchhhc
Q 035870 150 QFVNSRGY-------S-----------------------------ELFQKAYLI--------PICGSI-W--SCPSEGVT 182 (842)
Q Consensus 150 ~~l~~~~~-------~-----------------------------~~~~~~~~~--------p~~~~~-~--~~~~~~l~ 182 (842)
+++..... . ......++. -++... + +.+++++
T Consensus 832 d~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eV- 910 (1713)
T PLN02976 832 DGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEV- 910 (1713)
T ss_pred HHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHh-
Confidence 66653210 0 000000100 001110 1 1222222
Q ss_pred cCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeC----------CCcEEEEe
Q 035870 183 SFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPA----------DKGCTIVC 252 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~----------~~~v~V~~ 252 (842)
++. ++........+ .+..+.++||+++|+++|++.+ .|++|++|++|.+. +++|.|+|
T Consensus 911 --Sl~----~~~qd~~y~~f-gG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtT 978 (1713)
T PLN02976 911 --SLP----YWNQDDVYGGF-GGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVST 978 (1713)
T ss_pred --hhh----hhhcccccccC-CCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEE
Confidence 111 11111111111 2356779999999999999977 59999999999984 45799999
Q ss_pred CCCcEEeCCEEEEccChHHHHH---hhcCCCChHHHHhccccceee-ceEEEecCCCCcCCCCC----C----------c
Q 035870 253 GDGSREFYNSCVMALHAPDALK---ILGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNPA----A----------W 314 (842)
Q Consensus 253 ~~G~~~~ad~VV~A~p~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~~----~----------~ 314 (842)
.+|+++.||+||+|+|+.++.. .+.|+++....+++..+.|+. .++++.|+.++|+.... . |
T Consensus 979 sDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~ 1058 (1713)
T PLN02976 979 SNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCF 1058 (1713)
T ss_pred CCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEE
Confidence 9998999999999999999873 355667777788899999998 79999999999986421 1 1
Q ss_pred ceeeecccCCCceEEEEEccccc----CCCCC-----CCCeEEecCC-CC--CCcc-eeEEEEc---CCCCC---CHHHH
Q 035870 315 SAWNFLESFDSKVCLTYWLNVLQ----NLGET-----SLPFLVTLNP-DH--VPEH-TLLKWST---GHPVP---SVAAS 375 (842)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~l~----~l~~~-----~~~~~~~l~~-~~--~~~~-~~~~w~~---~~p~~---~~~~~ 375 (842)
..|+.....+..+++.+..+... .+.+. +...+..+.+ .. .|.. .+++|.. ....| .++..
T Consensus 1059 ~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~ 1138 (1713)
T PLN02976 1059 MFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGAS 1138 (1713)
T ss_pred EeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCC
Confidence 12222211223445554444211 11110 1122222322 11 2322 5668843 22222 22221
Q ss_pred HHHHhhhhhcCCC-CeEEecccc---CCCCCchhHhHHHHHHHHhcCC
Q 035870 376 KASLELDHIQGKR-GIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 376 ~~~~~~~~~~~~~-~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
....... ..|.. +|||||+.+ ..|+++||+.||.++|++|+..
T Consensus 1139 ~~d~d~L-AePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~ 1185 (1713)
T PLN02976 1139 GEDYDIL-GRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDI 1185 (1713)
T ss_pred chHHHHH-hCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 1111111 23444 499999966 4567799999999999999753
No 27
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.95 E-value=4.7e-26 Score=260.37 Aligned_cols=294 Identities=19% Similarity=0.236 Sum_probs=179.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchh-HHHHHHHcCCCccc--
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPN-MMEFFESLGVDMEM-- 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~-~~~l~~~lGl~~~~-- 77 (842)
+||||||||++||+||..|+++|++|+|||+++++||+++|++.+|+.+|.|+|++.....+. ..++++++|+....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 699999999999999999999999999999999999999999999999999999985322233 45888999987431
Q ss_pred -ccceeeEeccCCC-cee-eCCCCCCcchhhhhhccCC--hHHHHHHHHHHhhh---------------HHHHHHHHhhc
Q 035870 78 -SDMSFSVSLEKGH-GCE-WGSRNGLSSLFAQKKNVLN--PYFWQMLREIIKFK---------------DDVLGYLEELE 137 (842)
Q Consensus 78 -~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 137 (842)
.+....+.+.+|. .+. +.+ ......+.....+ ..++..+.+..... ......+....
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~d---~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWHD---PDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALR 158 (492)
T ss_pred cCCCCcEEEECCCceEeeeecC---HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcC
Confidence 1222333444442 222 211 1111111111110 11222222211100 00000000000
Q ss_pred CC---CCCCccccHHHHHHhcC-CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCC
Q 035870 138 SN---PDIDRSETLGQFVNSRG-YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR 213 (842)
Q Consensus 138 ~~---~~~~~~~s~~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 213 (842)
.. .......|+.+|+++.+ +.+.....++........+.++++.+......++.+.. ...+.++++||
T Consensus 159 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~G~~~~~GG 230 (492)
T TIGR02733 159 PDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQ--------APHGLWHLHGS 230 (492)
T ss_pred hhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccc--------cCCCceeecCc
Confidence 00 00013578889998763 33333344444332222334444442211111121111 11234669999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCC-----cEEeCCEEEEccChHHHHHhhcC-CCChHHHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDG-----SREFYNSCVMALHAPDALKILGN-QATFDETR 286 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G-----~~~~ad~VV~A~p~~~~~~ll~~-~~~~~~~~ 286 (842)
+++|+++|++.++++|++|+++++|++|..+++++ .|.+.+| +++.||+||+|+|+..+.+++++ ..++...+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~ 310 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHH
Confidence 99999999999999999999999999999987753 3444443 57899999999999999998874 33445566
Q ss_pred hccccceeec--eEEEecCCC
Q 035870 287 ILGAFQYVYS--DIFLHRDKR 305 (842)
Q Consensus 287 ~l~~~~~~~~--~v~l~~~~~ 305 (842)
.+.++++++. .+++.++..
T Consensus 311 ~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred HHhcCCCCCceEEEEEeeccc
Confidence 6777887774 566777664
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.95 E-value=5.9e-27 Score=238.95 Aligned_cols=196 Identities=18% Similarity=0.272 Sum_probs=169.0
Q ss_pred CeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhc
Q 035870 631 QEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAV 709 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~ 709 (842)
++|||||||+|.++..+++. ++++|+|+|+|+++++.+++++...|+.++++++..|+.+.+..++||+|+++.+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999988 46899999999999999999999999988999999999766644689999999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
++ +..+|++++++|||||++++.++..... . .....++.. .+++..++.+.+.+ +||++.+.++++.
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~--~~~~~~~~~------~~~s~~~~~~~l~~-~Gf~~~~~~~~~~ 147 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLL--S--AIEHEETTS------YLVTREEWAELLAR-NNLRVVEGVDASL 147 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccC--c--ccccccccc------ccCCHHHHHHHHHH-CCCeEEEeEECcH
Confidence 76 8999999999999999999988753221 0 011122222 36789999888887 8999999999999
Q ss_pred cHHHHHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 790 HYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 790 ~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+|..++ |..+|.++++++...++|+.|.|+|++|+.+|++ |+.|.+++.|
T Consensus 148 ~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (224)
T smart00828 148 EIANFL--YDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYAL 197 (224)
T ss_pred hHhhhc--cChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEE
Confidence 999876 9999999999999988999999999999999998 9999988764
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.8e-26 Score=255.87 Aligned_cols=383 Identities=17% Similarity=0.215 Sum_probs=216.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCee-eecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
++|||||||+||||||..|.+.|++|+|||+++|+|||++|.+..+.. +|+|++++++.....+.-+.+++|++.....
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~~~~ 95 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELYKVR 95 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccceec
Confidence 589999999999999999999999999999999999999999996665 9999999976444456688899999987755
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHh-----
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNS----- 154 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~----- 154 (842)
....+....+......-.... ...+...+.....+. .............++.+.+..
T Consensus 96 ~~~~l~~~~~~~~~~~~d~~~-----------~~~~~~l~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~ 157 (501)
T KOG0029|consen 96 DTCPLFNENGGESDKVFDDFV-----------EQEFNRLLDDASNLE-------QRLDNEIIGISDDSFGEALEAFLSAS 157 (501)
T ss_pred ccccccccCCcccccccccch-----------hhhhHHHHHHHhhhh-------hhhhhcccccccccHHHHHHhHHHHH
Confidence 444443333211000000000 000001111111100 000000000011112111110
Q ss_pred -----------cCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCC-CCceEEecCChhHHHHHHH
Q 035870 155 -----------RGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFG-RPQWLTVRWRSHSYVNKVR 222 (842)
Q Consensus 155 -----------~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~L~ 222 (842)
.+.........+ +.+........+.+ + ..++... ..+. ........+|+..++..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~--~~~~~~d-----~~~~~~~~~~~~~~G~~~v~~~la 226 (501)
T KOG0029|consen 158 RLMKTLLELLLEGEADKVLQWHL-VNLELTFIAHLENA---S--ARLWDQD-----ELFGGGGIHLLMKGGYEPVVNSLA 226 (501)
T ss_pred HHHHhhHHHhhhhhhhHHHHHHH-HHHHHHhhccHhHh---h--HHhhhhh-----hhcccccchhHhhCCccHHHhhcC
Confidence 010000000000 11111111111111 0 0000000 0111 1134667899999999998
Q ss_pred HHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHHH--h-hcCCCChHHHHhccccceee-ce
Q 035870 223 KQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRILGAFQYVY-SD 297 (842)
Q Consensus 223 ~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~~~~~~-~~ 297 (842)
+ |.+|+++..|.+|.+.+++ +.|++.++..+.+|+||+|+|..++.. + +.|+++....+++.++.++. .+
T Consensus 227 ~-----~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~K 301 (501)
T KOG0029|consen 227 E-----GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNK 301 (501)
T ss_pred C-----CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeE
Confidence 8 6699999999999998877 455555555599999999999999987 3 45556777799999999999 69
Q ss_pred EEEecCCCCcCCCCCCcce-------------eeecccCCCceEEEEEccccc----CCCC---------CCCCeEEecC
Q 035870 298 IFLHRDKRFMPQNPAAWSA-------------WNFLESFDSKVCLTYWLNVLQ----NLGE---------TSLPFLVTLN 351 (842)
Q Consensus 298 v~l~~~~~~~p~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~l~----~l~~---------~~~~~~~~l~ 351 (842)
+.+.|+..+|+.+...+.. |++......+..+....+... .+.+ .++.+|....
T Consensus 302 v~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~ 381 (501)
T KOG0029|consen 302 VILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEE 381 (501)
T ss_pred EEEEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCc
Confidence 9999999999654322211 233322333434443333211 1111 1122333111
Q ss_pred CCCCCcceeEEEEc------CCCCCCHHHHHHH-HhhhhhcCCCC-eEEecccc---CCCCCchhHhHHHHHHHHhcCC
Q 035870 352 PDHVPEHTLLKWST------GHPVPSVAASKAS-LELDHIQGKRG-IWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 352 ~~~~~~~~~~~w~~------~~p~~~~~~~~~~-~~~~~~~~~~~-l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
...+.+..+.+|.. .++.+..+..... .++ ..+..+ +||||+++ ..|.++||+.||.++|..|+..
T Consensus 382 ~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l--~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~ 458 (501)
T KOG0029|consen 382 VPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRL--AEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDS 458 (501)
T ss_pred CCCccceeeeeecccccCCccccccCCCCChhHHHHH--hccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHH
Confidence 11112226668854 2222222222221 222 334455 99999977 5666699999999999999753
No 30
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.94 E-value=3.5e-25 Score=254.09 Aligned_cols=285 Identities=20% Similarity=0.155 Sum_probs=175.6
Q ss_pred EEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc------
Q 035870 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME------ 76 (842)
Q Consensus 3 V~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~------ 76 (842)
|||||||++||+||.+|+++|++|+|||+++++||+++|++.+|+.+|.|++++.. ...+.++++++|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~--~~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM--PEALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc--ccHHHHHHHHcCCChhheEEEE
Confidence 79999999999999999999999999999999999999999999999999999852 2345588888885421
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCC---hHHHHHHHHHHhhhH-HHHH-----------HHHh-hcCCC
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLN---PYFWQMLREIIKFKD-DVLG-----------YLEE-LESNP 140 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~-----------~~~~-~~~~~ 140 (842)
..+..+.+.+.+|+.+.+.. .............+ ..+.+.+..+.+... .... .... .....
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQLDVDN--DQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLL 156 (502)
T ss_pred ECCCceEEECCCCCEEEecC--CHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhh
Confidence 12223334445555444432 11111111111111 011111111111110 0000 0000 00000
Q ss_pred CCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHH
Q 035870 141 DIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNK 220 (842)
Q Consensus 141 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 220 (842)
......|+.+|+++....+.+ ..++. .....++.++.+.+. ...++.+.. .....+++.||++.++++
T Consensus 157 ~~~~~~s~~~~~~~~~~~~~l-~~~l~-~~~~~~g~~p~~~~~--~~~l~~~~~--------~~~g~~~~~gG~~~l~~a 224 (502)
T TIGR02734 157 ALLAWRSLYSKVARFFSDERL-RQAFS-FHALFLGGNPFRTPS--IYALISALE--------REWGVWFPRGGTGALVAA 224 (502)
T ss_pred hccCcCCHHHHHHhhcCCHHH-HHHhc-ccceeeccCcccchH--HHHHHHHHH--------hhceEEEcCCCHHHHHHH
Confidence 112467888888877444433 33332 223455666654421 112222211 123456789999999999
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHH-HhhcCCCCh-HHHHhccccceee--
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDAL-KILGNQATF-DETRILGAFQYVY-- 295 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~-~ll~~~~~~-~~~~~l~~~~~~~-- 295 (842)
|++.++++|++|+++++|++|..++++ +.|++.+|+++.||+||+|+++..+. .++++...+ ...+.+.+++++.
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~ 304 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSL 304 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCee
Confidence 999999999999999999999988776 57889999889999999999987666 455543322 2234445555554
Q ss_pred ceEEEecC
Q 035870 296 SDIFLHRD 303 (842)
Q Consensus 296 ~~v~l~~~ 303 (842)
..+++..+
T Consensus 305 ~~~~lgl~ 312 (502)
T TIGR02734 305 FVLYFGLL 312 (502)
T ss_pred eEEEEeec
Confidence 34566665
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.94 E-value=7.1e-27 Score=225.10 Aligned_cols=296 Identities=22% Similarity=0.318 Sum_probs=197.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHc---CCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESL---GVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~l---Gl~~~~~ 78 (842)
+|+||||||+||+||+.|+.+|.+|+||||..-+|||..|.+..+..+|.|+++|.+ ..+.+.++++.+ |+-....
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~-~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP-RDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC-CchHHHHHHHHHHhCCceeecc
Confidence 599999999999999999999999999999999999999999999999999999964 445555555443 2211110
Q ss_pred cceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCC
Q 035870 79 DMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYS 158 (842)
Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (842)
+.. +.+.+ +. .+
T Consensus 82 ~~~----------~~~~~-----------------------------------------------~~-----------~~ 93 (331)
T COG3380 82 PAV----------WTFTG-----------------------------------------------DG-----------SP 93 (331)
T ss_pred ccc----------ccccc-----------------------------------------------CC-----------CC
Confidence 000 00000 00 00
Q ss_pred HHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCe
Q 035870 159 ELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238 (842)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V 238 (842)
+ .....-|.-.-||+.|++.|+..| +|.++++|
T Consensus 94 -------------------~-----------------------~~d~~pyvg~pgmsalak~LAtdL-----~V~~~~rV 126 (331)
T COG3380 94 -------------------P-----------------------RGDEDPYVGEPGMSALAKFLATDL-----TVVLETRV 126 (331)
T ss_pred -------------------C-----------------------CCCCCccccCcchHHHHHHHhccc-----hhhhhhhh
Confidence 0 000111334457889999888866 89999999
Q ss_pred eEEEeCCCcEEEEeCCCc-EEeCCEEEEccChHHHHHhhcC---CCChHHHHhccccceee-ceEEEecCCCCc-CC---
Q 035870 239 CSVLPADKGCTIVCGDGS-REFYNSCVMALHAPDALKILGN---QATFDETRILGAFQYVY-SDIFLHRDKRFM-PQ--- 309 (842)
Q Consensus 239 ~~I~~~~~~v~V~~~~G~-~~~ad~VV~A~p~~~~~~ll~~---~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~-p~--- 309 (842)
++|.+.++.|++++++|. ...+|.||+|+|++++..||.+ .++...+..+....|.+ ..++++|+.++. |.
T Consensus 127 t~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~ 206 (331)
T COG3380 127 TEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPGN 206 (331)
T ss_pred hhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCCc
Confidence 999999999999997664 6799999999999999999853 24556788899999999 477888885532 22
Q ss_pred ----CCCCcceeeecc---cCCCceEEEEEccccc--CCC-------CCCCCeEEecCCCCC--Ccc-eeEEEEcCCCCC
Q 035870 310 ----NPAAWSAWNFLE---SFDSKVCLTYWLNVLQ--NLG-------ETSLPFLVTLNPDHV--PEH-TLLKWSTGHPVP 370 (842)
Q Consensus 310 ----~~~~~~~~~~~~---~~~~~~~v~~~~~~l~--~l~-------~~~~~~~~~l~~~~~--~~~-~~~~w~~~~p~~ 370 (842)
....|.+.+... .|.+...+-....... .+. ..+...+..+.+..- |.. ..++|+|++|.-
T Consensus 207 ~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~ 286 (331)
T COG3380 207 FVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPND 286 (331)
T ss_pred ccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhccccccccc
Confidence 233454433221 1334433221111100 011 112333444444322 333 677999999864
Q ss_pred CHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcC
Q 035870 371 SVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~ 418 (842)
....+.. . .+..-+||+|||||+.|-.|+|.+||..+|+.|+.
T Consensus 287 ~~~~~~L----~-ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 287 AVAGPPL----D-ADRELPLYACGDWCAGGRVEGAVLSGLAAADHILN 329 (331)
T ss_pred cccCCcc----c-cCCCCceeeecccccCcchhHHHhccHHHHHHHHh
Confidence 4322211 0 23456999999999888889999999999999975
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=99.94 E-value=1.4e-24 Score=233.20 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=182.2
Q ss_pred CchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCC--cccHHHHHHHHHHHHHHHcCC-----CCCCeEEEeccCc
Q 035870 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSE--DEDLKAAQMRKVSLLIEKARV-----SKGQEVLEIGCGW 640 (842)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l~~-----~~~~~vLDiGcG~ 640 (842)
.+....+++|+.|||..+++|+.+++++|+ .+||+.+ ..++.++|.++++.+++.+.+ +++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 455667889999999999999999998876 5888764 678999999999999999987 7889999999999
Q ss_pred hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHH
Q 035870 641 GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFG 719 (842)
Q Consensus 641 G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~ 719 (842)
|.++..++++.+++|+|+|+|+.|++.|+++++..++.++++++++|+.+++ ++++||+|+++.+++|+++ ...+++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~ 207 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQ 207 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHH
Confidence 9999999998789999999999999999999999888888999999999988 6789999999999999987 789999
Q ss_pred HHHhccccCcEEEEEeecCCCccccc--ccC-----ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHH
Q 035870 720 CCESLLAEDGLLVLQFISIPDERYNE--YRL-----SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYY 792 (842)
Q Consensus 720 ~~~~~LkpgG~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~ 792 (842)
+++++|||||++++.++......... ... ...+...|.+|. +.+..++.+.+++ +||+.+..+++..+..
T Consensus 208 e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~~-aGf~~v~~~d~s~~v~ 284 (340)
T PLN02244 208 ELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAES-LGLQDIKTEDWSEHVA 284 (340)
T ss_pred HHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHH-CCCCeeEeeeCcHHHH
Confidence 99999999999999876543221110 000 011122333442 3478888888886 8999999999887655
Q ss_pred HHHH
Q 035870 793 QTLR 796 (842)
Q Consensus 793 ~tl~ 796 (842)
+...
T Consensus 285 ~~~~ 288 (340)
T PLN02244 285 PFWP 288 (340)
T ss_pred HHHH
Confidence 5443
No 33
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.93 E-value=2.1e-26 Score=261.38 Aligned_cols=397 Identities=23% Similarity=0.319 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC--CeeeecceEeecCCCchhHHHHHHHcCCCcccccc----eee
Q 035870 10 ISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--GVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM----SFS 83 (842)
Q Consensus 10 iaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~----~~~ 83 (842)
||||+||++|+++|++|+|||+++++|||++|.+.+ |+.+|.|+++++. .++++..+++++|+....... ...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFG-MYPNLLNLIDELGLELSLETFPFPQIPF 79 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEET-TSHHHHHHHHHHTHHTTEEEEEESSEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccc-cchhhHHHHHHhhhccccccccccccee
Confidence 699999999999999999999999999999999998 9999999999964 667788999999885333211 111
Q ss_pred Eecc-CCCceeeCCCCCCcchhhhhhc-cCC---hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCC
Q 035870 84 VSLE-KGHGCEWGSRNGLSSLFAQKKN-VLN---PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYS 158 (842)
Q Consensus 84 ~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (842)
.... ......+.. ......... ... ..................................++.+++......
T Consensus 80 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (450)
T PF01593_consen 80 VYWPFGDGRPPWPP----SQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFS 155 (450)
T ss_dssp EEEEEEEEEEEEEE----CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccccccccc----ccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 1100 000001000 000000000 000 0000000000000000000000000000000234445555444333
Q ss_pred HHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccc---cccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeC
Q 035870 159 ELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHL---LQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTS 235 (842)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~ 235 (842)
+.+...++.+............. +.......+..... ........+....|+...+...+++.. |++|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---g~~i~l~ 229 (450)
T PF01593_consen 156 EIFRESLFRPFFFGAFGFLPDES---SAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEEL---GGEIRLN 229 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---THHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHH---GGGEESS
T ss_pred hhhHHHHHHhhhhhhhccccchh---hhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhc---CceeecC
Confidence 33333233333333332222222 11111111111100 012233445666677777766666655 7799999
Q ss_pred CCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH-hhcCCCChHHHHhccccceee-ceEEEecCCCCcCCCC--
Q 035870 236 SEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK-ILGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNP-- 311 (842)
Q Consensus 236 ~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~-ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~-- 311 (842)
++|++|+.++++|.|++.+|+++.||+||+|+|...+.+ .+.+.++....+++..++|.+ .++++.++.++|+...
T Consensus 230 ~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~ 309 (450)
T PF01593_consen 230 TPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDF 309 (450)
T ss_dssp EEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTE
T ss_pred CcceeccccccccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeecccccccccc
Confidence 999999999999999999999999999999999999996 444435555678889999998 6889999999887741
Q ss_pred --------CCcceeeec-c-cC--CCceEEEEEcc-c----ccCCCC-----CCCCeEEecCCC-CCCcc---eeEEEEc
Q 035870 312 --------AAWSAWNFL-E-SF--DSKVCLTYWLN-V----LQNLGE-----TSLPFLVTLNPD-HVPEH---TLLKWST 365 (842)
Q Consensus 312 --------~~~~~~~~~-~-~~--~~~~~v~~~~~-~----l~~l~~-----~~~~~~~~l~~~-~~~~~---~~~~w~~ 365 (842)
..+..+... . .+ ++...+..++. . ...+.+ .+.+.+..+.+. ..+++ .+.+|..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~ 389 (450)
T PF01593_consen 310 FGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSR 389 (450)
T ss_dssp SEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTT
T ss_pred cceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccc
Confidence 112111111 1 11 13333433332 1 111111 111222222331 12222 4557765
Q ss_pred -CCCCC--CHHHHHHH--HhhhhhcCC-CCeEEeccccCCC---CCchhHhHHHHHHHHhc
Q 035870 366 -GHPVP--SVAASKAS--LELDHIQGK-RGIWFCGAYQGYG---FHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 366 -~~p~~--~~~~~~~~--~~~~~~~~~-~~l~~aG~~~g~G---~~e~A~~SG~~aA~~Il 417 (842)
.++.. ........ ......++. +||||||+|+..+ .+++|+.||++||++||
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 390 DPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp STTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 33322 11111111 222224555 6999999988544 45999999999999986
No 34
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.93 E-value=9.2e-24 Score=240.96 Aligned_cols=293 Identities=18% Similarity=0.197 Sum_probs=174.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCC---chh-HHHHHHHcCCCccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT---YPN-MMEFFESLGVDMEM 77 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~---~~~-~~~l~~~lGl~~~~ 77 (842)
||||||||++||+||.+|+++|++|+||||++.+||++++++.+|+.+|.|++++.... .++ +.+++..+|.....
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLET 81 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcccc
Confidence 89999999999999999999999999999999999999999999999999999974321 333 34677777754433
Q ss_pred ccc--eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHH---------------HhhcCCC
Q 035870 78 SDM--SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYL---------------EELESNP 140 (842)
Q Consensus 78 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 140 (842)
... ...+.+.+|..+... .............. |.-.+.+.++..........+ ......+
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~--~d~~~~~~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
T TIGR02730 82 IPDPVQIHYHLPNGLNVKVH--REYDDFIQELVAKF-PHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP 158 (493)
T ss_pred cCCCccEEEECCCCeeEeee--cCHHHHHHHHHHHC-chhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence 222 233444444333322 12222222221111 111111111111110000000 0000000
Q ss_pred ------CCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCC-CchhhccCCHHHHHHHHhhccccccCCCCceEEecCC
Q 035870 141 ------DIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSC-PSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR 213 (842)
Q Consensus 141 ------~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 213 (842)
......|+.+++++...++.+. .++.... ..++. ++.+. ++......+.. ...+..+++.||
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~~~-~~~~~~p~~~~---p~~~~~~~~~~------~~~~g~~~~~gG 227 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRYIRDPGLL-KFIDIEC-FCWSVVPADQT---PMINAGMVFSD------RHYGGINYPKGG 227 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHhcCCHHHH-HHHHHHH-HhccCCCcccc---hhhhHHHhhcc------cccceEecCCCh
Confidence 0001356777877764445433 3333221 22232 22333 22222211111 122466789999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHH-HhhcCCC-ChHHHHhccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDAL-KILGNQA-TFDETRILGA 290 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~-~ll~~~~-~~~~~~~l~~ 290 (842)
++.++++|++.++++|++|+++++|++|..++++ +.|++.+|++++||+||+|++++.+. +|++... ++.....+.+
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~ 307 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence 9999999999999999999999999999988766 47888899889999999998776555 5776432 2333334445
Q ss_pred cceee--ceEEEecCCCCcC
Q 035870 291 FQYVY--SDIFLHRDKRFMP 308 (842)
Q Consensus 291 ~~~~~--~~v~l~~~~~~~p 308 (842)
+.++. .++++..+....|
T Consensus 308 ~~~s~s~~~~~l~l~~~~~p 327 (493)
T TIGR02730 308 YVKSPSFLSLHLGVKADVLP 327 (493)
T ss_pred ccCCCceEEEEEEecCccCC
Confidence 55554 4667777765544
No 35
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=7.5e-23 Score=219.33 Aligned_cols=403 Identities=18% Similarity=0.181 Sum_probs=239.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
|+|+|+|||+|||+||++|+++|++|||+|+++++||.+.|++. +|...|+|.|.| .+.|.++.+++++++.+....-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f-~~~Y~n~~~ll~~~~~~~~~~~ 79 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVF-FGCYYNLLTLLKELPIEDRLQL 79 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEe-chhHHHHHHHhhhCCchheeeh
Confidence 79999999999999999999999999999999999999999998 899999999999 4699999999999998855432
Q ss_pred ceeeEec-----cCCCceeeCCCCCCcch-----hhhhhccCChHHHHHHHHHHhhhHH---HHHHHHhhcCCCCCCccc
Q 035870 80 MSFSVSL-----EKGHGCEWGSRNGLSSL-----FAQKKNVLNPYFWQMLREIIKFKDD---VLGYLEELESNPDIDRSE 146 (842)
Q Consensus 80 ~~~~~~~-----~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 146 (842)
......+ ..|..-.+..+..+... +-........+ ..+-+.++... ..+.+.. .+..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~e-------ld~~ 149 (485)
T COG3349 80 REHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRRE---KIRFVLRLGDAPIGADRSLRE-------LDKI 149 (485)
T ss_pred HhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHH---HhHHhhccccccchhHHHHHH-------Hhcc
Confidence 1111111 11111111111111000 00000000111 11111111111 0111111 1789
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCCh-hHHHHHHHHHh
Q 035870 147 TLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRS-HSYVNKVRKQL 225 (842)
Q Consensus 147 s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~L~~~l 225 (842)
|+.+|+++++.++......+.|+........++..+..........+.... ........++|++ ..+...+.+.+
T Consensus 150 s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~----~~~~i~~~~~g~~~E~~~~p~~~yi 225 (485)
T COG3349 150 SFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT----LEASILRNLRGSPDEVLLQPWTEYI 225 (485)
T ss_pred cHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc----cCcchhhhhcCCCcceeeehhhhhc
Confidence 999999999888888888899998888888888885544444333332211 1122333445554 35778899999
Q ss_pred hhcCceEEeCCCeeEEEeCCCc-----EEEEeCCCc---EEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-
Q 035870 226 ESWGCQIRTSSEVCSVLPADKG-----CTIVCGDGS---REFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY- 295 (842)
Q Consensus 226 ~~~G~~i~~~~~V~~I~~~~~~-----v~V~~~~G~---~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~- 295 (842)
++.|.+++.+.+|+.|..+... +.+... +. ...++.++.+........+++.... +...+.+..+...+
T Consensus 226 ~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~ 304 (485)
T COG3349 226 PERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPV 304 (485)
T ss_pred cccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccce
Confidence 9999999999999999887621 344443 43 3456667777777777777776554 55567777777777
Q ss_pred ceEEEecCCCCcCCCC---CCcce-eeecccCCCceEEE-------EEcc--cccC-----------CCCC-------CC
Q 035870 296 SDIFLHRDKRFMPQNP---AAWSA-WNFLESFDSKVCLT-------YWLN--VLQN-----------LGET-------SL 344 (842)
Q Consensus 296 ~~v~l~~~~~~~p~~~---~~~~~-~~~~~~~~~~~~v~-------~~~~--~l~~-----------l~~~-------~~ 344 (842)
.++.+.++...++... ..|.. -.++..+.. .++. .+.+ ..+. +.+. ..
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~-~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e 383 (485)
T COG3349 305 ITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLG-GVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFE 383 (485)
T ss_pred eEEEEeecCccccccccchhhhhhccccccccCC-ceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHH
Confidence 5778888754332221 11111 001111110 0000 0000 0000 0000 01
Q ss_pred CeEEecCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEecccc---CCCCCchhHhHHHHHHHHhcCCc
Q 035870 345 PFLVTLNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 345 ~~~~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
.....+.|...... .........+.+...+.....++...++.+|++++|||+ ..+.+|+|..||+++|+.|++..
T Consensus 384 ~~~~~~vP~~~~a~~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 384 KELYELVPSLAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred HHhhhcCCchhcccccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence 11111222111111 111222234444444455556666778899999999998 45666999999999999998643
No 36
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=7.7e-23 Score=202.32 Aligned_cols=193 Identities=22% Similarity=0.341 Sum_probs=155.4
Q ss_pred chHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHH
Q 035870 569 TLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIV 648 (842)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (842)
......++|+..||..|+..++.++. ..-+.+++.+...+|.+|||||||||.++..++
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~---------------------~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~ 70 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHR---------------------LWRRALISLLGIKPGDKVLDVACGTGDMALLLA 70 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchH---------------------HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHH
Confidence 45667889999999999888875552 333567777788899999999999999999999
Q ss_pred Hh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccc
Q 035870 649 KR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLA 726 (842)
Q Consensus 649 ~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lk 726 (842)
+. ..++|+|+|+|+.|++.|++++.+.+..+ ++|+++|++++| ++.+||+|.+.+.|+++++ .+.+|++++|+||
T Consensus 71 k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlK 147 (238)
T COG2226 71 KSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLK 147 (238)
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhc
Confidence 98 45799999999999999999999988875 999999999999 9999999999999999987 8999999999999
Q ss_pred cCcEEEEEeecCCCcccccccCccchhhhcccC-------------------CCCCCCHHHHHHHHhhcCCcEEEEEEec
Q 035870 727 EDGLLVLQFISIPDERYNEYRLSSDFIKEYIFP-------------------GGCLPSLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 727 pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
|||++++.++..+....-.. ....|..+++.| .-..|+.+++.+.+++ +||+.+..+++
T Consensus 148 pgG~~~vle~~~p~~~~~~~-~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~-~gf~~i~~~~~ 225 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRK-AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEK-AGFEEVRYENL 225 (238)
T ss_pred CCeEEEEEEcCCCCchhhHH-HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHh-cCceEEeeEee
Confidence 99999999998876431110 011122222222 1236888888888877 89987665553
No 37
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=8.1e-21 Score=214.59 Aligned_cols=259 Identities=23% Similarity=0.282 Sum_probs=153.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcC-CCccc--
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLG-VDMEM-- 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lG-l~~~~-- 77 (842)
+||||||||++||+||.+|+++|++|+||||++++||+++|.+.+||.+|+|++++.. +....++++++ ++...
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~---~~~~~~~~~l~~l~~~~l~ 80 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLM---PDPGPLFRELGNLDADGLD 80 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeec---CchHHHHHHhccCccccee
Confidence 5899999999999999999999999999999999999999999999999999988843 23335566666 43332
Q ss_pred ---ccceeeEeccCCCceeeCC-CCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCC-----------
Q 035870 78 ---SDMSFSVSLEKGHGCEWGS-RNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDI----------- 142 (842)
Q Consensus 78 ---~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 142 (842)
.+..+.+.+.+|..+.... .......+..........+...+..+.+... ............
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 157 (487)
T COG1233 81 LLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYE---LLAALLLAPPRSELLLVPDTPER 157 (487)
T ss_pred eeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhH---HHHhhcCCCchhhhhhccccHHH
Confidence 2222333444444433321 1111111110000001111111111111100 011100000000
Q ss_pred ------CccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhH
Q 035870 143 ------DRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHS 216 (842)
Q Consensus 143 ------~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 216 (842)
....+..+++... +.+......+.......+ .++...+ .+..++... ....++++++||++.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~~~~~~--------~~~~G~~~p~GG~~a 225 (487)
T COG1233 158 LLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP--ALYLLLSHL--------GLSGGVFYPRGGMGA 225 (487)
T ss_pred HHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh--HHHHHHHHh--------cccCCeeeeeCCHHH
Confidence 0223445555554 443333333322211111 2332221 112222221 134578899999999
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHHHhhc
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~ 277 (842)
++++|++.++++|++|+++++|++|..++++ ++|++.+|+.+.+|.||+++.......+.+
T Consensus 226 l~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~ 287 (487)
T COG1233 226 LVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLG 287 (487)
T ss_pred HHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence 9999999999999999999999999998874 788888887899999999987744444443
No 38
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=3.3e-22 Score=201.27 Aligned_cols=150 Identities=26% Similarity=0.353 Sum_probs=94.0
Q ss_pred chHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHH
Q 035870 569 TLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIV 648 (842)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (842)
..+.-.+.|+..||..|++.++..+..+. +.+++.+...+|.+|||+|||+|.++..++
T Consensus 8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr---------------------~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~ 66 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWR---------------------RKLIKLLGLRPGDRVLDVACGTGDVTRELA 66 (233)
T ss_dssp --------------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHG
T ss_pred HHHHHHHHHHHHhCCCccccCCcHHHHHH---------------------HHHHhccCCCCCCEEEEeCCChHHHHHHHH
Confidence 34556788999999999888776653321 245566678899999999999999999999
Q ss_pred Hh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhcc
Q 035870 649 KR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLL 725 (842)
Q Consensus 649 ~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~L 725 (842)
++ +..+|+|+|+|++|++.|+++++..+.. +|+++++|++++| ++++||+|++.+.++++++ +...+++++|+|
T Consensus 67 ~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVL 143 (233)
T PF01209_consen 67 RRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD--RERALREMYRVL 143 (233)
T ss_dssp GGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHE
T ss_pred HHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHc
Confidence 87 3579999999999999999999998876 8999999999999 7899999999999999987 899999999999
Q ss_pred ccCcEEEEEeecCCCcc
Q 035870 726 AEDGLLVLQFISIPDER 742 (842)
Q Consensus 726 kpgG~~~~~~~~~~~~~ 742 (842)
||||++++.+++.|...
T Consensus 144 kPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 144 KPGGRLVILEFSKPRNP 160 (233)
T ss_dssp EEEEEEEEEEEEB-SSH
T ss_pred CCCeEEEEeeccCCCCc
Confidence 99999999999988753
No 39
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.87 E-value=2.5e-20 Score=192.95 Aligned_cols=208 Identities=17% Similarity=0.276 Sum_probs=167.2
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++... .+++++.++|+.+.+ ++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCC
Confidence 457888899999999999999999999999887788999999999999999998754 247999999998877 6689
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHhh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAMSV 775 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~ 775 (842)
||+|++..+++|++.+++..++++++++|||||++++.++...... .. ..-...++- ....+++..++.+.+++
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--NW---DEEFKAYIKKRKYTLIPIQEYGDLIKS 192 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--Cc---HHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999999866689999999999999999999887654321 00 001111111 12245788999888887
Q ss_pred cCCcEEEEEEecCccHHHHHHHHHHHHHHhHHHHHhccCCHHHHH----HHHHHHHHHHHhccc
Q 035870 776 ASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIR----TWEYYFDYCAAGFKS 835 (842)
Q Consensus 776 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r----~w~~y~~~~~~~f~~ 835 (842)
+||+++..+++..++...+..-.+.++++.+++.+. |+++... .|...+..|..|-..
T Consensus 193 -aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (263)
T PTZ00098 193 -CNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKEYNSLKDGWTRKIKDTKRKLQK 254 (263)
T ss_pred -CCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHHHHHHHHHHHHHHHHhhccccc
Confidence 899999999999988888888889999999999886 6655332 478888888777543
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.85 E-value=7.9e-20 Score=207.64 Aligned_cols=192 Identities=18% Similarity=0.224 Sum_probs=159.1
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++.. +...++++.++|+.+.+ ++++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC
Confidence 35677777788899999999999999999998878899999999999999998875 44457999999998877 6678
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHhh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAMSV 775 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~ 775 (842)
||+|+|..+++|+++ +..++++++++|||||++++.++....... ...+..++. .+..+++..++.+.+.+
T Consensus 333 fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~l~~ 404 (475)
T PLN02336 333 FDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTP------SPEFAEYIKQRGYDLHDVQAYGQMLKD 404 (475)
T ss_pred EEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999999999987 889999999999999999998876543211 111222222 34567899999888887
Q ss_pred cCCcEEEEEEecCccHHHHHHHHHHHHHHhHHHHHhccCCHHHHHH
Q 035870 776 ASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRT 821 (842)
Q Consensus 776 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~ 821 (842)
+||++..+++++.+|..++..|.+.+.++.++.... +++.....
T Consensus 405 -aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 448 (475)
T PLN02336 405 -AGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYND 448 (475)
T ss_pred -CCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHH
Confidence 899999999999999999999999999999998775 66655443
No 41
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.83 E-value=9.3e-20 Score=188.47 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=126.0
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHH--cCCCCCeEEEEccccCCc-cCC
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKE--AGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~--~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
+++.+.++++.+|||+|||+|.++..+++.. .++|+|+|+|++|++.|+++... ....++++++++|+.+++ +++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 4456677889999999999999999998863 36999999999999999987642 222347999999999998 678
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc-ccCC--------------
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY-IFPG-------------- 760 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~p~-------------- 760 (842)
+||.|+++.+++|+++ +..++++++|+|||||++++.++..+...+.... ..|..+. +.|.
T Consensus 145 sfD~V~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~ 220 (261)
T PLN02233 145 YFDAITMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLK 220 (261)
T ss_pred CEeEEEEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHH
Confidence 9999999999999976 8999999999999999999999887654321110 0111111 1110
Q ss_pred ---CCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 761 ---GCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 761 ---~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
..+++..++.+.+++ +||+.....+++
T Consensus 221 ~s~~~f~s~~el~~ll~~-aGF~~~~~~~~~ 250 (261)
T PLN02233 221 SSINEYLTGEELEKLALE-AGFSSAKHYEIS 250 (261)
T ss_pred HHHHhcCCHHHHHHHHHH-CCCCEEEEEEcC
Confidence 236789999888886 899987776654
No 42
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=1.8e-19 Score=189.27 Aligned_cols=165 Identities=22% Similarity=0.398 Sum_probs=128.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
.++.+|||||||+|.++..+++. +++|+|||+|+++++.|+++....+...+++++++|+.+++ .+++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46789999999999999999875 89999999999999999998776665568999999999887 56799999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC----CCCCHHHHHHHHhhcCCcEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG----CLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~----~~~~~~~~~~~~~~~~gf~v~ 782 (842)
||+.+ +..++++++++|||||.+++.++......|........++.+++.++. .+.+.+++.+.+++ +||++.
T Consensus 209 eHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~-aGf~i~ 285 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR-ASVDVK 285 (322)
T ss_pred HhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH-cCCeEE
Confidence 99987 799999999999999999998876543222111112233444444433 25689999988887 899988
Q ss_pred EEEecCccHHHHHHHH
Q 035870 783 QVENIGIHYYQTLRCW 798 (842)
Q Consensus 783 ~~~~~~~~y~~tl~~w 798 (842)
++. |..|.+....|
T Consensus 286 ~~~--G~~~~p~~~~w 299 (322)
T PLN02396 286 EMA--GFVYNPITGRW 299 (322)
T ss_pred EEe--eeEEcCcCCeE
Confidence 764 44455544444
No 43
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.80 E-value=6.7e-19 Score=168.77 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=128.8
Q ss_pred HHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh
Q 035870 571 TQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR 650 (842)
Q Consensus 571 ~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (842)
..-+++++..||..||...+...+- ..+..+.+++..+++++||++||||.++..+.++
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGiHRl---------------------WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~ 121 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGIHRL---------------------WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRH 121 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHH---------------------HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHh
Confidence 3446789999999999988755422 2256778999999999999999999999999887
Q ss_pred -cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC--eEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHH
Q 035870 651 -TG------CKYTGITLSEEQLKYAEMKVKEAGLQDL--IRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGC 720 (842)
Q Consensus 651 -~~------~~v~gid~s~~~~~~a~~~~~~~~l~~~--v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~ 720 (842)
.. .+|+++|+|++|++.+++|.++.++.+. +.++++|++++| ++.+||..++.+.|..+++ ++..+++
T Consensus 122 v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--~~k~l~E 199 (296)
T KOG1540|consen 122 VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--IQKALRE 199 (296)
T ss_pred hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC--HHHHHHH
Confidence 33 6899999999999999999988888665 999999999999 8899999999999999988 8999999
Q ss_pred HHhccccCcEEEEEeecCCC
Q 035870 721 CESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 721 ~~~~LkpgG~~~~~~~~~~~ 740 (842)
++|+|||||++.+..+....
T Consensus 200 AYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHhcCCCcEEEEEEccccc
Confidence 99999999999998887655
No 44
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=1.5e-19 Score=174.44 Aligned_cols=158 Identities=25% Similarity=0.429 Sum_probs=124.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
-+|.+|||||||-|.++..+|+. |++|||+|+|+++++.|+....+.|+ ++++.+...+++. ..++||+|+|.+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999998 89999999999999999999999887 4778888888887 44899999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCC-----CCCHHHHHHHHhhcCCcEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGC-----LPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~-----~~~~~~~~~~~~~~~gf~v 781 (842)
||+++ +..+++.+.+++||||.++++++......+-.......++-+ ++|.+. +-..+|+...+.. +++.+
T Consensus 135 EHv~d--p~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~-~~~~~ 210 (243)
T COG2227 135 EHVPD--PESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLG-ANLKI 210 (243)
T ss_pred HccCC--HHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhccc-CCceE
Confidence 99988 889999999999999999999988654433222222333333 445543 3456777776665 68877
Q ss_pred EEEEecCccHHHH
Q 035870 782 EQVENIGIHYYQT 794 (842)
Q Consensus 782 ~~~~~~~~~y~~t 794 (842)
.+.. |.+|.+-
T Consensus 211 ~~~~--g~~y~p~ 221 (243)
T COG2227 211 IDRK--GLTYNPL 221 (243)
T ss_pred Eeec--ceEeccc
Confidence 6654 3445443
No 45
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.80 E-value=1.3e-18 Score=178.46 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=142.7
Q ss_pred HHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh
Q 035870 571 TQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR 650 (842)
Q Consensus 571 ~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (842)
+.-.+.++.+||..+.+.....+ ....+.+++.+.++++.+|||+|||+|.++..+++.
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~---------------------~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~ 66 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRH---------------------KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEA 66 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCch---------------------HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHH
Confidence 44566777788766655432111 222356778888899999999999999999999987
Q ss_pred --cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhcccc
Q 035870 651 --TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 651 --~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp 727 (842)
++.+|+|+|+|+++++.|+++++..+++ +++++++|..+++ ++++||+|++..+++|+++ +..+++++.++|||
T Consensus 67 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 67 VGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD--YMQVLREMYRVVKP 143 (231)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCCCCCCCccEEEEecccccCCC--HHHHHHHHHHHcCc
Confidence 3579999999999999999999887774 8999999998887 6689999999999999976 78999999999999
Q ss_pred CcEEEEEeecCCCcccccccCccchhhhcccC-------------------CCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 728 DGLLVLQFISIPDERYNEYRLSSDFIKEYIFP-------------------GGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 728 gG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
||++++.+...+.... +.....+..+++.| ...+|+..++.+.+++ +||++.+++.+.
T Consensus 144 gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-aGf~~~~~~~~~ 220 (231)
T TIGR02752 144 GGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQE-AGFKDVEVKSYT 220 (231)
T ss_pred CeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCeeEEEEcc
Confidence 9999987765544321 00000000000000 1235788999888886 899988877654
No 46
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.78 E-value=3.4e-17 Score=176.05 Aligned_cols=363 Identities=12% Similarity=0.115 Sum_probs=211.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCee-eecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
.||+|||||+|||++|++|++.|.+|+|+|+++.+||++.+....|.. .+.|+|+++. ..+.+.+++.++.- .....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t-~~~~v~~~~~~~~~-~~~~~ 79 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT-NNQYVWDYISPFFE-LNNYQ 79 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec-CcHHHHHHHHhhcc-cccee
Confidence 389999999999999999999999999999999999999988777654 4899999964 56778888777531 11111
Q ss_pred ceeeEeccCCCceeeCCCC-CCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHH---Hhc
Q 035870 80 MSFSVSLEKGHGCEWGSRN-GLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFV---NSR 155 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l---~~~ 155 (842)
.. .....+|+.+.++-.. .+..++ .......+.+.+. ......... +..++.+|. ...
T Consensus 80 ~~-~~~~~~g~~~~~P~~~~~i~~l~-------~~~~~~~~~~~l~------~~~~~~~~~----~~~~~~e~~d~~~~~ 141 (377)
T TIGR00031 80 HR-VLALYNNLDLTLPFNFNQFRKLL-------GVKDAQELQNFFN------AQFKYGDHV----PLEELQEIADPDIQL 141 (377)
T ss_pred EE-EEEEECCeEEccCCCHHHHHHhc-------ccchHHHHHHHHH------HHhhcccCC----CCCCHHHHHHHHHHH
Confidence 11 2334556666555421 121111 1111111111111 000000000 124555555 555
Q ss_pred CCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc--cccccCCCCceEEecCChhHHHHHHHHHhhhcCceEE
Q 035870 156 GYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH--HLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIR 233 (842)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~ 233 (842)
+++.+.+.++.|+..+.|+.++++++ +..+. .+... .-...+.......|++|...+++.|++.- +.+|+
T Consensus 142 -~G~~lye~ff~~Yt~K~Wg~~p~el~---~~~~~-RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~---~i~v~ 213 (377)
T TIGR00031 142 -LYQFLYQKVYKPYTVKQWGLPAEEID---PFVIG-RVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHP---LIDVK 213 (377)
T ss_pred -HHHHHHHHhccccCceeeCCChHHCC---HHHeE-ecceEecCCCCcccccccccccccHHHHHHHHHhcC---CCEEE
Confidence 88999999999999999999999983 33221 11110 00123344556778999999999998764 67899
Q ss_pred eCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeeceEEEec-CCCCcCCCCC
Q 035870 234 TSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFLHR-DKRFMPQNPA 312 (842)
Q Consensus 234 ~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~~v~l~~-~~~~~p~~~~ 312 (842)
+|+.+..++.++++|.+. ++ .+. +.||.|.|.+.+.+ ....+++|.+..+...+ +.....
T Consensus 214 l~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f~-----------~~~g~L~yrsl~f~~e~~~~~~~q---- 274 (377)
T TIGR00031 214 LNCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLFG-----------YRFGALQYRSLKFEWERHEFKNFQ---- 274 (377)
T ss_pred eCCccceeeccccceeec--cc-ccc-CcEEEecCchHHHh-----------hccCcccceeEEEEEEEeccccCC----
Confidence 999888888655545443 23 233 88999988775543 34567788875443332 222111
Q ss_pred CcceeeecccCCCceEEEEEcccccCCCCCCCCeEEecCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhhh-cCCCCe
Q 035870 313 AWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDHI-QGKRGI 390 (842)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~l~~l~~~~~~~~~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~~-~~~~~l 390 (842)
.....+|+ ..-...-++.+-+-...-.+ ..+. .. .-|.. ....+...+|.++...........++ ...+||
T Consensus 275 ~~~~vnyp-~~~~~tRI~e~k~f~~~~~~--~t~i---~~-E~~~~~~~~~~~pyYpi~~~~~~~~~~~y~~la~~~~~v 347 (377)
T TIGR00031 275 GYAVVNFP-LNVPITRIVEYKHLTYVGSK--QTIV---SK-EYPGEWKVGDPEPYYPVNDNKNMALFKKYLELASREDNL 347 (377)
T ss_pred CCeEEEcC-CCCCcceEEeeecCCCCCCC--CeEE---Ee-ecchhhcCCCceeeeeccCHHHHHHHHHHHHHHhcCCCE
Confidence 11122333 11111222222111110000 0011 00 00111 01122456788888777766666553 334699
Q ss_pred EEeccccCCCCC--chhHhHHHHHHHHhc
Q 035870 391 WFCGAYQGYGFH--EDGLKAGMTAAHGVL 417 (842)
Q Consensus 391 ~~aG~~~g~G~~--e~A~~SG~~aA~~Il 417 (842)
+|+|.+..+.+. +.|+.+|..+|++++
T Consensus 348 ~~~GRlg~y~Y~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 348 ILLGRLAEYQYYDMDQAILAALYKAEQLL 376 (377)
T ss_pred EEeeeeeEeEeecHHHHHHHHHHHHHHhh
Confidence 999995544443 999999999999864
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=1.2e-17 Score=173.20 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.+.++.+++.+. .++.+|||||||+|.++..+++. +.+|+++|+|++|++.|++++...++.++++++++|+.+++
T Consensus 31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~ 108 (255)
T PRK11036 31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (255)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh
Confidence 344567777776 55679999999999999999997 88999999999999999999999988778999999998875
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-ccchhh--------hcccCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-SSDFIK--------EYIFPGGCL 763 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~i~p~~~~ 763 (842)
.+++||+|++..+++|+.+ +..+++++.++|||||++++..+......+..... ...... ....|. ..
T Consensus 109 ~~~~fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 185 (255)
T PRK11036 109 LETPVDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD-YP 185 (255)
T ss_pred cCCCCCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC-CC
Confidence 4679999999999999976 78999999999999999998765543211111000 000010 111222 23
Q ss_pred CCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 764 PSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 764 ~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
.+.+++.+.+++ +||+++...-++
T Consensus 186 ~~~~~l~~~l~~-aGf~~~~~~gi~ 209 (255)
T PRK11036 186 LDPEQVYQWLEE-AGWQIMGKTGVR 209 (255)
T ss_pred CCHHHHHHHHHH-CCCeEeeeeeEE
Confidence 467888888876 899998765543
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.75 E-value=2.2e-18 Score=166.84 Aligned_cols=151 Identities=23% Similarity=0.385 Sum_probs=119.5
Q ss_pred CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEccccCCccCCCccEEEEcc
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----LIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
|++|||+|||+|.+++.||+. |++|+|||+|+++++.|++......... ++++.+.|.+... ++||.|+|.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 488999999999999999997 9999999999999999999855444322 3677778888776 6799999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCC----CCCHHHHHHHHhhcCCcE
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGC----LPSLSRITSAMSVASRLC 780 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~----~~~~~~~~~~~~~~~gf~ 780 (842)
++||+.+ ++++++.+.++|||+|.+++.++...-..+.......+.+.+.+.+|.+ ++++.++...+.. .+++
T Consensus 167 vleHV~d--p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~-~~~~ 243 (282)
T KOG1270|consen 167 VLEHVKD--PQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA-NGAQ 243 (282)
T ss_pred HHHHHhC--HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh-cCcc
Confidence 9999976 9999999999999999999999886654333322334445553444443 5788999888877 6888
Q ss_pred EEEEEe
Q 035870 781 VEQVEN 786 (842)
Q Consensus 781 v~~~~~ 786 (842)
+..+..
T Consensus 244 v~~v~G 249 (282)
T KOG1270|consen 244 VNDVVG 249 (282)
T ss_pred hhhhhc
Confidence 776543
No 49
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.74 E-value=1.3e-16 Score=175.79 Aligned_cols=251 Identities=12% Similarity=0.147 Sum_probs=151.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCC--------------------eeeecceEeecCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG--------------------VDLDLGFMVFNRVTY 61 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g--------------------~~~d~G~~~~~~~~~ 61 (842)
||||||+|++|+.+|..|+++|++|+++|+++..||+++|.+..+ +.+|+.++++. ..
T Consensus 6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~--~~ 83 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM--AS 83 (443)
T ss_pred eEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee--cC
Confidence 799999999999999999999999999999999999999974322 34566666663 33
Q ss_pred hhHHHHHHHcCCCcccccc--eeeEec-cCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhh-c
Q 035870 62 PNMMEFFESLGVDMEMSDM--SFSVSL-EKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEEL-E 137 (842)
Q Consensus 62 ~~~~~l~~~lGl~~~~~~~--~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (842)
..+.+++.+.++....... .-...+ .+|+....+. .-...+. ...+... ..+.+.+|.....++.... .
T Consensus 84 G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~--s~~~~~~--s~ll~l~---eKr~l~kfl~~v~~~~~~~~~ 156 (443)
T PTZ00363 84 GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPA--TDMEALS--SPLMGFF---EKNRCKNFLQYVSNYDENDPE 156 (443)
T ss_pred ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCC--CHHHHhh--CCCcchh---hHHHHHHHHHHHHhhccCChh
Confidence 5666888888877654321 111222 3444333221 1111111 1111111 1222233332222221110 0
Q ss_pred CCCCC-CccccHHHHHHhcCCCHHHHHHHH---HHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCC
Q 035870 138 SNPDI-DRSETLGQFVNSRGYSELFQKAYL---IPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR 213 (842)
Q Consensus 138 ~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~---~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 213 (842)
..... .+..|+.+|+++.++++...+.+. .......+...+... ....+..+... ...++...+.++.||
T Consensus 157 ~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~---tl~ri~~y~~S---~~~~g~~p~~yp~gG 230 (443)
T PTZ00363 157 THKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIE---TVMRIKLYMDS---LSRYGKSPFIYPLYG 230 (443)
T ss_pred hhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHH---HHHHHHHHHHH---HhhccCCcceeeCCC
Confidence 01111 146899999999999887655322 221111121111110 11112223221 112233446778999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEcc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMAL 267 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~ 267 (842)
++.|+++|++.+...|++++++++|++|..++++ +.|++++|+++.|+.||+..
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 9999999999998899999999999999987644 67999999999999999864
No 50
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=4.9e-17 Score=168.82 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 614 q~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
+.+....+++.+...++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.|+++ +++++++|+.+++
T Consensus 14 ~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~ 85 (255)
T PRK14103 14 RGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK 85 (255)
T ss_pred hhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC
Confidence 3445567888888889999999999999999999987 578999999999999999763 5789999998877
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc----ccCccchhhh---ccc-CCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE----YRLSSDFIKE---YIF-PGGCLP 764 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~----~~~~~~~~~~---~i~-p~~~~~ 764 (842)
++++||+|+|+.+++|+++ +..++++++++|||||++++............ ......|... ..+ .+..++
T Consensus 86 ~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 163 (255)
T PRK14103 86 PKPDTDVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQ 163 (255)
T ss_pred CCCCceEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCC
Confidence 6679999999999999986 79999999999999999999754321111100 0001112211 111 123467
Q ss_pred CHHHHHHHHhhcCCcEEEEEEe
Q 035870 765 SLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 765 ~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
+..++.+.+.+ +||++...+.
T Consensus 164 ~~~~~~~~l~~-aGf~v~~~~~ 184 (255)
T PRK14103 164 TPAGYAELLTD-AGCKVDAWET 184 (255)
T ss_pred CHHHHHHHHHh-CCCeEEEEee
Confidence 88999888887 8998655443
No 51
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.73 E-value=2e-16 Score=165.46 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC
Q 035870 612 AAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 612 ~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (842)
-+..-+...++..+...++++|||||||+|.++..++......|+|+|+|+.|+..++...+..+...++.+..+|+.++
T Consensus 104 ~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 104 WRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC
Confidence 33345566788888878899999999999999999988733479999999999887654333223334789999999998
Q ss_pred ccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHH
Q 035870 692 AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITS 771 (842)
Q Consensus 692 ~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~ 771 (842)
+...+||+|+|+++++|+++ +..++++++++|||||.+++.+................+ .+. .-...+|+..++..
T Consensus 184 p~~~~FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry-~k~-~nv~flpS~~~L~~ 259 (314)
T TIGR00452 184 HELYAFDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRY-AKM-KNVYFIPSVSALKN 259 (314)
T ss_pred CCCCCcCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHH-Hhc-cccccCCCHHHHHH
Confidence 85568999999999999976 889999999999999999998765443221111000001 110 00013579999988
Q ss_pred HHhhcCCcEEEEEEecCcc--HHHHHHHHH
Q 035870 772 AMSVASRLCVEQVENIGIH--YYQTLRCWR 799 (842)
Q Consensus 772 ~~~~~~gf~v~~~~~~~~~--y~~tl~~w~ 799 (842)
.+++ +||+.+.+.+.... ......+|.
T Consensus 260 ~L~~-aGF~~V~i~~~~~tt~~eqr~t~w~ 288 (314)
T TIGR00452 260 WLEK-VGFENFRILDVLKTTPEEQRKTDWI 288 (314)
T ss_pred HHHH-CCCeEEEEEeccCCCHHHhhhhhhh
Confidence 8876 89998887765443 223344554
No 52
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=1.5e-16 Score=157.60 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=117.4
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+++++.++++++..++. ++++.+.|+.+++.+++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCE
Confidence 4556666667889999999999999999997 889999999999999999999988875 69999999987764568999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
|+++.+++|++.+....+++++.++|||||++++.....++... ... -+| ...+.+++.+.+. ||
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--~~~--------~~~--~~~~~~el~~~~~---~~ 163 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTV--------GFP--FAFKEGELRRYYE---GW 163 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--CCC--------CCC--CccCHHHHHHHhC---CC
Confidence 99999999998777999999999999999997664433322110 000 011 2346777765543 89
Q ss_pred EEEEEEe
Q 035870 780 CVEQVEN 786 (842)
Q Consensus 780 ~v~~~~~ 786 (842)
++...++
T Consensus 164 ~~~~~~~ 170 (197)
T PRK11207 164 EMVKYNE 170 (197)
T ss_pred eEEEeeC
Confidence 8877643
No 53
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=2.3e-16 Score=167.50 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
..+.+.++..+...++.+|||||||+|.++..+++....+|+|+|+|+.++..++......+...+++++.+|+.+++.+
T Consensus 108 ~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~ 187 (322)
T PRK15068 108 DWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL 187 (322)
T ss_pred HhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCc
Confidence 34556677777766789999999999999999998844579999999999877655444333345799999999998866
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG-GCLPSLSRITSAM 773 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~~ 773 (842)
++||+|+|.++++|+.+ +..+++++++.|||||.+++.++..+............+ . -+++ ..+|+..++.+.+
T Consensus 188 ~~FD~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~--~~~~~~~lps~~~l~~~L 262 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-A--KMRNVYFIPSVPALKNWL 262 (322)
T ss_pred CCcCEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-h--cCccceeCCCHHHHHHHH
Confidence 78999999999999976 889999999999999999998765443221110000000 0 0111 1368999999888
Q ss_pred hhcCCcEEEEEEecCc
Q 035870 774 SVASRLCVEQVENIGI 789 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~~ 789 (842)
.+ +||+++.+.+...
T Consensus 263 ~~-aGF~~i~~~~~~~ 277 (322)
T PRK15068 263 ER-AGFKDVRIVDVSV 277 (322)
T ss_pred HH-cCCceEEEEeCCC
Confidence 87 8999988887654
No 54
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=8.5e-17 Score=144.68 Aligned_cols=107 Identities=26% Similarity=0.407 Sum_probs=93.6
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-cCCccCCCccEEEEcc-h
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY-RQLAKANKYDRIISCE-M 705 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~~~~~fD~i~s~~-~ 705 (842)
|+.+|||||||+|.++..+++. ++++|+|+|+|+++++.|++++.+.+..++++++++|+ ......++||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 6789999999999999999995 79999999999999999999998888888999999999 4444457899999999 5
Q ss_pred hhhcCh-hhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGH-EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++++.+ +...++++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 554432 468899999999999999999965
No 55
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=2e-16 Score=164.87 Aligned_cols=166 Identities=21% Similarity=0.239 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc
Q 035870 611 KAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689 (842)
Q Consensus 611 ~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 689 (842)
...|.+..+.+++.+.+.++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.|+++. .++.++.+|+.
T Consensus 13 ~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~ 86 (258)
T PRK01683 13 EDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIA 86 (258)
T ss_pred HHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchh
Confidence 3445566778888888889999999999999999999987 5789999999999999999874 26899999998
Q ss_pred CCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccc----ccccCccchhhhcccCC---CC
Q 035870 690 QLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERY----NEYRLSSDFIKEYIFPG---GC 762 (842)
Q Consensus 690 ~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~p~---~~ 762 (842)
++.+.++||+|+++.+++|+++ ...+++++.++|||||.++++......... ........|...+..++ ..
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 164 (258)
T PRK01683 87 SWQPPQALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAP 164 (258)
T ss_pred ccCCCCCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcC
Confidence 8765579999999999999986 789999999999999999996432211110 01111223444443333 45
Q ss_pred CCCHHHHHHHHhhcCCcEEEEEE
Q 035870 763 LPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 763 ~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
+|+..++.+.+.+ +|+.+...+
T Consensus 165 ~~~~~~~~~~l~~-~g~~v~~~~ 186 (258)
T PRK01683 165 LPPPHAYYDALAP-AACRVDIWH 186 (258)
T ss_pred CCCHHHHHHHHHh-CCCceeeee
Confidence 6788888888887 788764433
No 56
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.70 E-value=3.1e-16 Score=165.13 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=122.4
Q ss_pred HHHHHcCC-CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 620 LLIEKARV-SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 620 ~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.+++.+.+ .++.+|||||||+|.++..+++. .+.+|+++|+|++|++.|+++... .+++++.+|+.+++ ++++
T Consensus 103 ~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~s 178 (340)
T PLN02490 103 DALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDY 178 (340)
T ss_pred HHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCc
Confidence 45555554 46889999999999999999887 467999999999999999988642 26889999999887 6689
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
||+|+++.+++|+++ ....+++++++|||||++++.....+..+... .+...+ ...++.+++.+.+++
T Consensus 179 FDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r-----~~~~~~----~~~~t~eEl~~lL~~- 246 (340)
T PLN02490 179 ADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSR-----FFADVW----MLFPKEEEYIEWFTK- 246 (340)
T ss_pred eeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHHH-----Hhhhhh----ccCCCHHHHHHHHHH-
Confidence 999999999999987 67899999999999999988654433211110 000111 124688999988887
Q ss_pred CCcEEEEEEecCccHHH
Q 035870 777 SRLCVEQVENIGIHYYQ 793 (842)
Q Consensus 777 ~gf~v~~~~~~~~~y~~ 793 (842)
+||+.+.+++++..+.+
T Consensus 247 aGF~~V~i~~i~~~~~~ 263 (340)
T PLN02490 247 AGFKDVKLKRIGPKWYR 263 (340)
T ss_pred CCCeEEEEEEcChhhcc
Confidence 89999999988765433
No 57
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.68 E-value=1.1e-15 Score=151.09 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=115.0
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...+++ +++...|+...+.+++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCE
Confidence 4455556666779999999999999999997 889999999999999999999888773 7888888876554468999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
|+++.+++|++.+....++++++++|||||++++........ +. .. .|..+..+.+++.+.+. +|
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~---~~--------~~~~~~~~~~el~~~f~---~~ 162 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YP---CH--------MPFSFTFKEDELRQYYA---DW 162 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CC---CC--------CCcCccCCHHHHHHHhC---CC
Confidence 999999999987778999999999999999976654332211 10 00 12234567888876553 58
Q ss_pred EEEEEEe
Q 035870 780 CVEQVEN 786 (842)
Q Consensus 780 ~v~~~~~ 786 (842)
++.....
T Consensus 163 ~~~~~~e 169 (195)
T TIGR00477 163 ELLKYNE 169 (195)
T ss_pred eEEEeec
Confidence 8777663
No 58
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.68 E-value=1.9e-15 Score=156.36 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=72.2
Q ss_pred CCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHH-HhhcCCC
Q 035870 203 GRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDAL-KILGNQA 280 (842)
Q Consensus 203 ~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~-~ll~~~~ 280 (842)
..+.|.++.||++.++.++++.++++|++|.+++.|++|..+++. +.|..+||+++.++.||+++.++.+. +|++...
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 346889999999999999999999999999999999999998866 58999999999999999998777766 8888765
Q ss_pred ChHH
Q 035870 281 TFDE 284 (842)
Q Consensus 281 ~~~~ 284 (842)
.+++
T Consensus 332 LPee 335 (561)
T KOG4254|consen 332 LPEE 335 (561)
T ss_pred CCch
Confidence 5554
No 59
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.67 E-value=1.4e-15 Score=157.71 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 613 AQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 613 aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
.|+...+.+++.+...++.+|||||||+|.++..+++. +.+|+++|+|++|++.|+++.. .+.++++|+.+++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~ 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc
Confidence 45666778888887777889999999999999999876 8899999999999999988742 3578999999887
Q ss_pred -cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc-ccCCCCCCCHHHHH
Q 035870 693 -KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY-IFPGGCLPSLSRIT 770 (842)
Q Consensus 693 -~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~p~~~~~~~~~~~ 770 (842)
++++||+|+|+.+++++++ +..+++++.++|||||.+++..+...... .... .|..-. ......+++..++.
T Consensus 99 ~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--el~~--~~~~~~~~~~~~~~~~~~~l~ 172 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP--ELHQ--AWQAVDERPHANRFLPPDAIE 172 (251)
T ss_pred CCCCcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH--HHHH--HHHHhccCCccccCCCHHHHH
Confidence 6679999999999999876 89999999999999999999876543211 1110 011000 11123467888888
Q ss_pred HHHhhcCCcEEEEEEecCccH
Q 035870 771 SAMSVASRLCVEQVENIGIHY 791 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~~~~~y 791 (842)
..+.. .++.. +.+.+..+|
T Consensus 173 ~~l~~-~~~~~-~~~~~~~~f 191 (251)
T PRK10258 173 QALNG-WRYQH-HIQPITLWF 191 (251)
T ss_pred HHHHh-CCcee-eeeEEEEEC
Confidence 87775 68764 445555444
No 60
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.67 E-value=3.3e-15 Score=165.58 Aligned_cols=243 Identities=16% Similarity=0.173 Sum_probs=142.2
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEe--eCCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVT--FDGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
|+|+|||||+||||||++|++. |++|+|||+++.+||++++.. .+|+.++.|... ...+++++++++++.-.
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~--~~~y~~l~~ll~~ipsl 100 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM--ENHFECLWDLFRSIPSL 100 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc--cchHHHHHHHHHhcccc
Confidence 5899999999999999999985 689999999999999998855 579999888764 45889999999887422
Q ss_pred cccc--cc-eeeEec-cCCC----ceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccc
Q 035870 75 MEMS--DM-SFSVSL-EKGH----GCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSE 146 (842)
Q Consensus 75 ~~~~--~~-~~~~~~-~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (842)
..+. .. .+.... .+.. ++.+.. + ..+....-.++. +...++.++ ........++.
T Consensus 101 e~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~--g--~~~d~~~~~L~~---k~r~~Ll~l----------~l~~e~~Ld~~ 163 (576)
T PRK13977 101 EDPGASVLDEFYWFNKDDPNYSKARLIHKR--G--EILDTDKFGLSK---KDRKELLKL----------LLTPEEKLDDK 163 (576)
T ss_pred CCCCcccccceeeeecCCcccceeeEEcCC--C--CEEECcCCCCCH---HHHHHHHHH----------hccCHHHhCCc
Confidence 2110 00 000000 0000 001000 0 000000000111 111111111 11111112789
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc--cccccCCCCceEEec-CChhHHHHHHHH
Q 035870 147 TLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH--HLLQLFGRPQWLTVR-WRSHSYVNKVRK 223 (842)
Q Consensus 147 s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-gG~~~l~~~L~~ 223 (842)
++.+|+.++.+...|. .++.++ ++-. .-.|+..+.+|+..- ++..+.........+ .-..+++..|.+
T Consensus 164 tI~d~f~~~Ff~t~Fw-~~w~t~----FaF~----~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~ 234 (576)
T PRK13977 164 TIEDWFSPEFFETNFW-YYWRTM----FAFE----KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIK 234 (576)
T ss_pred CHHHHHhhcCchhHHH-HHHHHH----HCCc----hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHH
Confidence 9999999987765443 334443 3322 223777777776532 222211111111111 224689999999
Q ss_pred HhhhcCceEEeCCCeeEEEeC--CC-c-E-EEEeC-CCc-----EEeCCEEEEccChHH
Q 035870 224 QLESWGCQIRTSSEVCSVLPA--DK-G-C-TIVCG-DGS-----REFYNSCVMALHAPD 271 (842)
Q Consensus 224 ~l~~~G~~i~~~~~V~~I~~~--~~-~-v-~V~~~-~G~-----~~~ad~VV~A~p~~~ 271 (842)
.|+++|++|+++++|++|..+ ++ + | .|... +|+ ....|.||+|+...+
T Consensus 235 ~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 235 YLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 999999999999999999985 32 2 3 34443 232 247899999976543
No 61
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=2.2e-15 Score=155.73 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=127.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
...++..+...++.+|||||||+|.++..+++.. ..+++++|+|+.+++.+++++...++..+++++.+|+.+.+ +.
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3456666677788999999999999999999884 48999999999999999999887666668999999998877 55
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc-------cCC-------
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI-------FPG------- 760 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~p~------- 760 (842)
++||+|++..+++++.+ +..+++++.++|+|||.+++.++..+.... ......+....+ +.+
T Consensus 120 ~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 78999999999999976 899999999999999999988776554321 000000000000 000
Q ss_pred -----CCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 761 -----GCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 761 -----~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
...++..++.+.+.+ +||++..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 228 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEE-AGFERVRYRNLTG 228 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHh-CCCceeeeeeeec
Confidence 134677888887776 8999888877543
No 62
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.66 E-value=2.5e-15 Score=169.95 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
...++.+|++.+++.|++|+.+++|++|+. ++.+.|+|.+| ++.||+||+|+.++.. .+++. + .. .+..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~-~l~~~-~----~~---~~~p 250 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA-SHFPQ-F----ER---SIAI 250 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc-ccChh-h----cC---eEEE
Confidence 568999999999999999999999999985 45578888888 6999999999987743 22221 0 00 0000
Q ss_pred eeceEEEecCC-------CCcCCCCCCcce---eeecc-cCCCceEEEEEcc-----c--------ccCCCCCCCCeEEe
Q 035870 294 VYSDIFLHRDK-------RFMPQNPAAWSA---WNFLE-SFDSKVCLTYWLN-----V--------LQNLGETSLPFLVT 349 (842)
Q Consensus 294 ~~~~v~l~~~~-------~~~p~~~~~~~~---~~~~~-~~~~~~~v~~~~~-----~--------l~~l~~~~~~~~~~ 349 (842)
....++ .+++ ..+|......+. ..|.. .++++..+..... . .....+.+.+.+..
T Consensus 251 ~~~~~~-~t~pl~~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (460)
T TIGR03329 251 VSSDMV-ITEPAPDLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRK 329 (460)
T ss_pred eccceE-ecCCCcHHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHH
Confidence 001111 1110 011111001010 01111 2333333321100 0 00000011222233
Q ss_pred cCCCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 350 LNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 350 l~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
+.|......+.+.|....+. +.+..+.+...++.+|||+|.+|.|+|+ ..|..+|+.+|+.|+|.+
T Consensus 330 ~fP~L~~~~i~~~W~G~~~~----t~D~~P~iG~~~~~~gl~~a~G~~G~Gv-~~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 330 FFPALAEVPIAASWNGPSDR----SVTGLPFFGRLNGQPNVFYGFGYSGNGV-APSRMGGQILSSLVLGLD 395 (460)
T ss_pred hCCCcCCCeeeEEEeceeCC----CCCCCceeeeecCCCCEEEEeCcCCCCh-hHHHHHHHHHHHHhcCCC
Confidence 44444444466788764442 2233334444445689999999999999 899999999999999865
No 63
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=1.3e-15 Score=156.82 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=99.4
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~ 703 (842)
++++.+|||||||+|..+..+++. ++++|+|+|+|++|++.|++++...+...+++++++|+.+++. ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 457889999999999999988873 6789999999999999999999988887789999999988873 359999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.+++|++++....++++++++|||||.+++.+...
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999987778899999999999999999987543
No 64
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=2e-15 Score=154.18 Aligned_cols=189 Identities=25% Similarity=0.332 Sum_probs=138.1
Q ss_pred HhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc
Q 035870 572 QARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT 651 (842)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~ 651 (842)
..++.++++||..|..+..+.+ ......+++.+...++.+|||+|||+|.++..+++..
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLH---------------------RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccH---------------------HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 3467889999988777653221 1223455666666788999999999999999999884
Q ss_pred C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC
Q 035870 652 G--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 652 ~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
. ++++++|+|+.+++.++++.. ...+++++.+|+.+.+ ++++||+|+++.+++|..+ +..+++++.++|+||
T Consensus 62 ~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 62 PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPG 136 (223)
T ss_pred CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCC
Confidence 4 599999999999999998875 3347999999998877 5578999999999999876 889999999999999
Q ss_pred cEEEEEeecCCCcccccccCccchhhhcccC------------------C-CCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 729 GLLVLQFISIPDERYNEYRLSSDFIKEYIFP------------------G-GCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 729 G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p------------------~-~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
|++++.+...+.... ......+....+.| . ..+++..++.+.+.+ +||++...+.+..
T Consensus 137 G~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 213 (223)
T TIGR01934 137 GRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKE-AGFEEVRYRSLTF 213 (223)
T ss_pred cEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHH-cCCccceeeeeec
Confidence 999998776543211 00000111111110 0 124577788888876 8999887776543
No 65
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=5.4e-16 Score=134.83 Aligned_cols=94 Identities=31% Similarity=0.452 Sum_probs=83.1
Q ss_pred EEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChh
Q 035870 634 LEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHE 712 (842)
Q Consensus 634 LDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~ 712 (842)
||+|||+|..+..++++.+.+|+++|+|+++++.++++.... ++.++++|..+++ ++++||+|+++.+++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeecc--
Confidence 899999999999999987889999999999999999987654 5679999999999 889999999999999994
Q ss_pred hHHHHHHHHHhccccCcEEEE
Q 035870 713 FMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 713 ~~~~~~~~~~~~LkpgG~~~~ 733 (842)
++..+++++.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 489999999999999999986
No 66
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.65 E-value=3.4e-15 Score=153.08 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=119.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....++.+++++..+|+... +++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchh
Confidence 467889999999999999999987 7789999999999999999998888766899999995443 4789999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc-----ccCCCCCCCHHHHHHHHhhcCCcEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY-----IFPGGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~p~~~~~~~~~~~~~~~~~~gf~v 781 (842)
+|++++....+++.+.+.+++++.+.+. .. ...... ..++.+. ..+.....+..++.+.+.+ +||++
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~--~~-~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~ 209 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTFA--PY-TPLLAL----LHWIGGLFPGPSRTTRIYPHREKGIRRALAA-AGFKV 209 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEEC--Cc-cHHHHH----HHHhccccCCccCCCCccccCHHHHHHHHHH-CCCce
Confidence 9998878889999999987655443321 11 110000 0111111 1122334577788887776 89999
Q ss_pred EEEEecCc-cHHHHHHHHHH
Q 035870 782 EQVENIGI-HYYQTLRCWRK 800 (842)
Q Consensus 782 ~~~~~~~~-~y~~tl~~w~~ 800 (842)
.....+.. +|..++.+|.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~ 229 (230)
T PRK07580 210 VRTERISSGFYFSRLLEAVR 229 (230)
T ss_pred EeeeeccchhHHHHHHHHhh
Confidence 88877643 56677777754
No 67
>PRK05785 hypothetical protein; Provisional
Probab=99.65 E-value=1.3e-15 Score=153.87 Aligned_cols=139 Identities=18% Similarity=0.279 Sum_probs=102.4
Q ss_pred hHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHH
Q 035870 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVK 649 (842)
Q Consensus 570 ~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~ 649 (842)
.+...+.++..||..|.+.....+.. -.+..++.+.... .++.+|||||||+|.++..+++
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~-----------------wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~ 71 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVR-----------------WRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKK 71 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHH-----------------HHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHH
Confidence 34557788888887776654322211 0011122222222 3478999999999999999998
Q ss_pred hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC
Q 035870 650 RTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 650 ~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
..+.+|+|+|+|++|++.|+++. .++++|+.++| ++++||+|++..+++|+.+ ++..+++++|+|||.
T Consensus 72 ~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 72 VFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQ 140 (226)
T ss_pred hcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhhccCC--HHHHHHHHHHHhcCc
Confidence 75679999999999999998641 35789999998 7899999999999999976 899999999999993
Q ss_pred cEEEEEeecCCC
Q 035870 729 GLLVLQFISIPD 740 (842)
Q Consensus 729 G~~~~~~~~~~~ 740 (842)
+++.+++.|+
T Consensus 141 --~~ile~~~p~ 150 (226)
T PRK05785 141 --VGFIAMGKPD 150 (226)
T ss_pred --eEEEEeCCCC
Confidence 3344445544
No 68
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.65 E-value=3e-15 Score=157.19 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=120.0
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEE
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRII 701 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~ 701 (842)
..++++++|||||||+|..+..+++.. ..+|+++|+|+++++.|+++....++. +++++.+|+.+++ ++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 457799999999999999888887763 358999999999999999999888875 8999999999887 567999999
Q ss_pred EcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEE
Q 035870 702 SCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 702 s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v 781 (842)
++.+++|.++ ...+++++.++|||||++++.++................ +..-.+...+..++.+.+.+ +||..
T Consensus 152 ~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~-aGf~~ 225 (272)
T PRK11873 152 SNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAEL---YAGCVAGALQEEEYLAMLAE-AGFVD 225 (272)
T ss_pred EcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHH---HhccccCCCCHHHHHHHHHH-CCCCc
Confidence 9999999876 688999999999999999998876543221111110001 11111234567888887776 89988
Q ss_pred EEEEec
Q 035870 782 EQVENI 787 (842)
Q Consensus 782 ~~~~~~ 787 (842)
..+...
T Consensus 226 v~i~~~ 231 (272)
T PRK11873 226 ITIQPK 231 (272)
T ss_pred eEEEec
Confidence 776543
No 69
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=1.8e-15 Score=143.87 Aligned_cols=107 Identities=31% Similarity=0.539 Sum_probs=96.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC--CCccEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA--NKYDRIISC 703 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~--~~fD~i~s~ 703 (842)
+.+.+|||+|||+|.++..++++ ++.+++|+|+|+++++.|+++++..+++ +++++++|+.+++.. ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 46789999999999999999953 5789999999999999999999999988 899999999997632 799999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.+++|+++ ...+++++.++|||+|.+++.++.
T Consensus 81 ~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999987 789999999999999999998776
No 70
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.64 E-value=5e-15 Score=150.15 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=126.1
Q ss_pred HHHHHHHHHcC--CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 616 RKVSLLIEKAR--VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
...+.+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...+..+++++.++|+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 34455666665 567899999999999999999987 78999999999999999999988777668999999998887
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc-----cCCCCCCCHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI-----FPGGCLPSLSR 768 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~p~~~~~~~~~ 768 (842)
++||+|++..+++|++.+....+++++.+++++++.+.+.. ....... ..++..+. .+....++..+
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP---KTAWLAF----LKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC---CchHHHH----HHHHHhhCcCcccccceEEecHHH
Confidence 78999999999999987778899999999998776655421 1111100 11111111 12223467888
Q ss_pred HHHHHhhcCCcEEEEEEecCccHHH
Q 035870 769 ITSAMSVASRLCVEQVENIGIHYYQ 793 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~~~~~y~~ 793 (842)
+.+.+.+ +||++...+.....+..
T Consensus 190 ~~~~l~~-~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 190 LERALGE-LGWKIVREGLVSTGFYN 213 (219)
T ss_pred HHHHHHH-cCceeeeeecccccchh
Confidence 8888876 89999988876655543
No 71
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.63 E-value=3.4e-15 Score=153.46 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=99.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
.++.+|||||||+|.++..+++. ++++|+|+|+|++|++.|+++++..+...+++++++|+.+++. ..+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 57789999999999999999885 5789999999999999999999887766689999999998873 3599999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+++|+++++...++++++++|||||.+++.+....
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 99999887789999999999999999999876543
No 72
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.63 E-value=1.4e-14 Score=139.05 Aligned_cols=147 Identities=18% Similarity=0.251 Sum_probs=109.3
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.++.-++.++||+|||.|..+.+||++ |..|+++|+|+..++.+++.+++.+++ |+..+.|+.+...++.||+
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCE
Confidence 4555566656779999999999999999998 999999999999999999999988884 9999999988775578999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
|+|..++.|+..+..+.+++.+.+.++|||++++.++..... +... . |...+...+++.... .++
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~~-~----------~~~f~~~~~EL~~~y---~dW 162 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPCP-S----------PFPFLLKPGELREYY---ADW 162 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S--S-S------------S--B-TTHHHHHT---TTS
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCCC-C----------CCCcccCHHHHHHHh---CCC
Confidence 999999999999999999999999999999999976643322 1111 1 111233556766553 478
Q ss_pred EEEEE
Q 035870 780 CVEQV 784 (842)
Q Consensus 780 ~v~~~ 784 (842)
++...
T Consensus 163 ~il~y 167 (192)
T PF03848_consen 163 EILKY 167 (192)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88765
No 73
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.62 E-value=3.3e-15 Score=144.06 Aligned_cols=137 Identities=22% Similarity=0.334 Sum_probs=103.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
..++.+|||||||.|.++..+++. +.+|+|+|+|+.+++. .++.....+..... ++++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 578899999999999999999877 7799999999999988 13444444444433 5689999999999
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc---CCCCCCCHHHHHHHHhhcCCcEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF---PGGCLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---p~~~~~~~~~~~~~~~~~~gf~v~ 782 (842)
++|+++ +..++++++++|||||++++.+............ .+ .+.. .+....+.+++.+.+++ +||+++
T Consensus 88 l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~ll~~-~G~~iv 159 (161)
T PF13489_consen 88 LEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFL---KW--RYDRPYGGHVHFFSPDELRQLLEQ-AGFEIV 159 (161)
T ss_dssp GGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHH---HC--CGTCHHTTTTEEBBHHHHHHHHHH-TTEEEE
T ss_pred Hhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHH---hc--CCcCccCceeccCCHHHHHHHHHH-CCCEEE
Confidence 999986 9999999999999999999998876431110000 00 1111 12345688999888877 899987
Q ss_pred E
Q 035870 783 Q 783 (842)
Q Consensus 783 ~ 783 (842)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 5
No 74
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=2.6e-14 Score=150.56 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=110.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEA 708 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~ 708 (842)
++.+|||||||+|..+.++++. +.+|+|+|+|+.+++.++++++..++ ++++...|+.+...+++||+|+++.+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4459999999999999999997 88999999999999999999998887 68999999877655579999999999999
Q ss_pred cChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEE
Q 035870 709 VGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 709 ~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
++.+....+++++.++|||||++++......... . . -.|.....+.+++.+.+. +|++...+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~-~---~--------~~p~~~~~~~~el~~~~~---~~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY-P---C--------PMPFSFTFKEGELKDYYQ---DWEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC-C---C--------CCCCCcccCHHHHHHHhC---CCEEEEEe
Confidence 9877899999999999999999776443222111 0 0 012234457778876643 58888774
No 75
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.61 E-value=1.9e-14 Score=153.69 Aligned_cols=158 Identities=16% Similarity=0.296 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
+.+++.+.++++.+|||||||+|.+++.++++ ++.+++++|+ +++++.+++++++.++.++++++.+|+.+.+. ..+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PEA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CCC
Confidence 45677778888999999999999999999998 6789999998 78999999999999998899999999876542 247
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC------CCCCHHHHHH
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG------CLPSLSRITS 771 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~------~~~~~~~~~~ 771 (842)
|+|++..++|+.+++....+++++++.|||||++++.++..++.....+ .++..++.+.+ ...+..++.+
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~ 292 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF----DYLSHYILGAGMPFSVLGFKEQARYKE 292 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh----hHHHHHHHHcccccccccCCCHHHHHH
Confidence 9999999999998876789999999999999999999886654322111 12233322222 2334678877
Q ss_pred HHhhcCCcEEEE
Q 035870 772 AMSVASRLCVEQ 783 (842)
Q Consensus 772 ~~~~~~gf~v~~ 783 (842)
.+.+ +||+.+.
T Consensus 293 ll~~-aGf~~v~ 303 (306)
T TIGR02716 293 ILES-LGYKDVT 303 (306)
T ss_pred HHHH-cCCCeeE
Confidence 7776 8997554
No 76
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=2.4e-14 Score=139.05 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=89.8
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~ 705 (842)
++++.+|||||||+|..+..+++. ++++|+++|+|+++++.|+++++..+++ +++++++|+.+++..++||+|+++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~ 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc
Confidence 345889999999999999999875 6789999999999999999999999986 49999999988775568999999752
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. .++.+++++.++|||||++++..
T Consensus 122 ----~--~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ----A--SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ----c--CHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 37899999999999999999853
No 77
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.60 E-value=1.3e-14 Score=152.30 Aligned_cols=148 Identities=26% Similarity=0.392 Sum_probs=107.5
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEccccCCccCCCccEEEEcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL----QDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
++.+|||||||+|.+++.+++. +.+|+|+|+|++|++.|+++.+..+. ..++++...|+.++. ++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~--~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS--GKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC--CCcCEEEEcC
Confidence 5789999999999999999987 88999999999999999999876522 136789999987764 7899999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc-cccccCccchhhhcccCC------CCCCCHHHHHHHHhhcC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER-YNEYRLSSDFIKEYIFPG------GCLPSLSRITSAMSVAS 777 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~p~------~~~~~~~~~~~~~~~~~ 777 (842)
+++|++++....+++.+.++ .++|. ++.. .+... +... ..+.+ .+|+ .++.+.+++.+.+++ +
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~~~~~~l----~~~g~-~~~g~~~~~r~y~~s~eel~~lL~~-A 290 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRL-IISF--APKTLYYDIL----KRIGE-LFPGPSKATRAYLHAEADVERALKK-A 290 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcchHHHHH----HHHHh-hcCCCCcCceeeeCCHHHHHHHHHH-C
Confidence 99999887677788888764 55555 4432 12111 1110 01111 2333 234578899888877 8
Q ss_pred CcEEEEEEecCc
Q 035870 778 RLCVEQVENIGI 789 (842)
Q Consensus 778 gf~v~~~~~~~~ 789 (842)
||++...+....
T Consensus 291 Gf~v~~~~~~~~ 302 (315)
T PLN02585 291 GWKVARREMTAT 302 (315)
T ss_pred CCEEEEEEEeec
Confidence 999987665443
No 78
>PRK08317 hypothetical protein; Provisional
Probab=99.59 E-value=7.6e-14 Score=144.33 Aligned_cols=165 Identities=20% Similarity=0.199 Sum_probs=119.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
+.+++.+.+.++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.++++.. ....++++...|+.+.+ +++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCCCC
Confidence 456778888999999999999999999999873 5799999999999999998833 23347999999998877 567
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-c-CccchhhhcccCCCCCCCHHHHHHHH
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-R-LSSDFIKEYIFPGGCLPSLSRITSAM 773 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~p~~~~~~~~~~~~~~ 773 (842)
+||+|++..+++|+.+ +..+++++.++|||||.+++............. . ....+...+........+..++.+.+
T Consensus 87 ~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 87 SFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred CceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 9999999999999987 899999999999999999997754322111110 0 00111111111111222345666666
Q ss_pred hhcCCcEEEEEEecC
Q 035870 774 SVASRLCVEQVENIG 788 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~ 788 (842)
.+ +||....++...
T Consensus 165 ~~-aGf~~~~~~~~~ 178 (241)
T PRK08317 165 RE-AGLTDIEVEPYT 178 (241)
T ss_pred HH-cCCCceeEEEEE
Confidence 66 899876665543
No 79
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.59 E-value=9.7e-14 Score=155.95 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHHHHHhhcCC-CChHHHHhcccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPDALKILGNQ-ATFDETRILGAF 291 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~-~~~~~~~~l~~~ 291 (842)
...+++.|++.++++|++|+++++|++|+.+++++ .|++.+| ++.||+||+|+.++.. .+++.. ...+ +.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g~~~p----i~-- 271 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLGVDIP----VY-- 271 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhCCCcc----cC--
Confidence 56889999999999999999999999999888876 4777655 7999999999987643 222210 0000 00
Q ss_pred ceeeceEEEecCCC-CcCCCCCCcceee-ecccCCCceEEEEEcc--ccc-CCC----CCCCCeEEecCCCCCCcceeEE
Q 035870 292 QYVYSDIFLHRDKR-FMPQNPAAWSAWN-FLESFDSKVCLTYWLN--VLQ-NLG----ETSLPFLVTLNPDHVPEHTLLK 362 (842)
Q Consensus 292 ~~~~~~v~l~~~~~-~~p~~~~~~~~~~-~~~~~~~~~~v~~~~~--~l~-~l~----~~~~~~~~~l~~~~~~~~~~~~ 362 (842)
+.....+.+..+.. ..|.......... .....++...+..... ... ... +.+.+.+..+.|......+...
T Consensus 272 p~rg~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~ 351 (416)
T PRK00711 272 PLKGYSLTVPITDEDRAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQATF 351 (416)
T ss_pred CccceEEEEecCCCCCCCceeEEecccCEEEeecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcccccccce
Confidence 00000111111111 1111000000000 0011123333321110 000 000 0011112223333222234556
Q ss_pred EEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCccc
Q 035870 363 WSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 363 w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~ 422 (842)
|...+|. + .+..+.+... +.+|+|++.+|.|+|+ ..|..+|+.+|+.|++.+.+
T Consensus 352 w~G~r~~-t---~D~~PiIG~~-~~~gl~~a~G~~g~G~-~~ap~~g~~la~li~g~~~~ 405 (416)
T PRK00711 352 WTGLRPM-T---PDGTPIVGAT-RYKNLWLNTGHGTLGW-TMACGSGQLLADLISGRKPA 405 (416)
T ss_pred eeccCCC-C---CCCCCEeCCc-CCCCEEEecCCchhhh-hhhhhHHHHHHHHHcCCCCC
Confidence 7655442 1 1222233332 3589999999999999 89999999999999987644
No 80
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.59 E-value=3.4e-15 Score=118.97 Aligned_cols=67 Identities=48% Similarity=0.821 Sum_probs=60.7
Q ss_pred EECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecC-CCchhHHHHHHHc
Q 035870 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR-VTYPNMMEFFESL 71 (842)
Q Consensus 5 IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~~l~~~l 71 (842)
|||||+|||+||++|+++|++|+|+|+++++||++++...+|+.+|.|++++.. ..++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999999999965 3578899999875
No 81
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.58 E-value=7.9e-14 Score=138.75 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=112.6
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEEc
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL--------------QDLIRLYLC 686 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--------------~~~v~~~~~ 686 (842)
.+..+..+++.+|||+|||.|..+..+|++ |.+|+|+|+|+.+++.+.+.. ++ ..+|+++++
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEc
Confidence 334444457789999999999999999998 999999999999999864321 21 136899999
Q ss_pred cccCCcc--CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCC
Q 035870 687 DYRQLAK--ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLP 764 (842)
Q Consensus 687 d~~~~~~--~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 764 (842)
|+.+++. .++||.|+...+++|++.+....+++.+.++|||||++++.++........ -| -+..
T Consensus 102 D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-------------gp-p~~~ 167 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-------------GP-PFSV 167 (213)
T ss_pred cCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-------------Cc-CCCC
Confidence 9988872 468999999999999999889999999999999999988877655322110 01 1235
Q ss_pred CHHHHHHHHhhcCCcEEEEEEecC
Q 035870 765 SLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 765 ~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.+++.+.+.. +|+++.++...
T Consensus 168 ~~~eL~~~f~~--~~~i~~~~~~~ 189 (213)
T TIGR03840 168 SPAEVEALYGG--HYEIELLESRD 189 (213)
T ss_pred CHHHHHHHhcC--CceEEEEeecc
Confidence 77888776643 67777666543
No 82
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=135.62 Aligned_cols=163 Identities=20% Similarity=0.209 Sum_probs=129.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
.+-...++..+.+.+..+|.|+|||.|..+..++++ +++.++|+|-|++|++.|+++. + +++|..+|++++.+
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p-~~~f~~aDl~~w~p 89 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----P-DATFEEADLRTWKP 89 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----C-CCceecccHhhcCC
Confidence 344567888889989999999999999999999999 8999999999999999998874 2 78999999999998
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc----cCccchhhhcccC---CCCCCCH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY----RLSSDFIKEYIFP---GGCLPSL 766 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~p---~~~~~~~ 766 (842)
+..+|++++|.+++++++ ..+.|..+-..|.|||.+.++....-+...... .....|-+.+--+ ...+|++
T Consensus 90 ~~~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~ 167 (257)
T COG4106 90 EQPTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSP 167 (257)
T ss_pred CCccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCH
Confidence 889999999999999998 789999999999999999997654433221111 1122344333221 3568899
Q ss_pred HHHHHHHhhcCCcEEEEEEe
Q 035870 767 SRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 767 ~~~~~~~~~~~gf~v~~~~~ 786 (842)
..+.+.+.. .+-+|.-.+.
T Consensus 168 a~Yy~lLa~-~~~rvDiW~T 186 (257)
T COG4106 168 AAYYELLAP-LACRVDIWHT 186 (257)
T ss_pred HHHHHHhCc-ccceeeeeee
Confidence 999888876 4666655444
No 83
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.58 E-value=5.9e-14 Score=144.02 Aligned_cols=178 Identities=24% Similarity=0.401 Sum_probs=131.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
...++.+...+...++.+|||||||+|.++..+++. +++|+++|+|+.+++.+++++...+. ++++...|..+.+
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh
Confidence 344455666666678899999999999999999886 88999999999999999999877665 5788889888775
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc----cCCCCCCCHHH
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI----FPGGCLPSLSR 768 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~p~~~~~~~~~ 768 (842)
.+++||+|++..+++|+++ ...+++.+.++|+|||.+++..+......+........++.... .....+++..+
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSE 188 (233)
T ss_pred cCCCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHH
Confidence 4579999999999999986 78999999999999999998765422111100000000111110 01123567888
Q ss_pred HHHHHhhcCCcEEEEEEecCccHHHHHHHHHH
Q 035870 769 ITSAMSVASRLCVEQVENIGIHYYQTLRCWRK 800 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~ 800 (842)
+.+.+.+ +||+++... +.+|.+....|..
T Consensus 189 ~~~~l~~-~Gf~~v~~~--~~~~~~~~~~~~~ 217 (233)
T PRK05134 189 LAAWLRQ-AGLEVQDIT--GLHYNPLTNRWKL 217 (233)
T ss_pred HHHHHHH-CCCeEeeee--eEEechhhcceee
Confidence 8888877 899988765 4567777777765
No 84
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.57 E-value=7.5e-15 Score=128.91 Aligned_cols=95 Identities=26% Similarity=0.515 Sum_probs=83.4
Q ss_pred EEEeccCchHHHHHHHHhc--C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcc-hh
Q 035870 633 VLEIGCGWGTLAIEIVKRT--G--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCE-MI 706 (842)
Q Consensus 633 vLDiGcG~G~~~~~la~~~--~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~-~~ 706 (842)
|||+|||+|..+..+++.. + .+++|+|+|++|++.++++....+. +++++++|+.+++ .+++||+|++.+ ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999873 3 7999999999999999999988766 7999999999988 678999999965 49
Q ss_pred hhcChhhHHHHHHHHHhccccCc
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDG 729 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG 729 (842)
+|+.++....+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
No 85
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.57 E-value=5.8e-14 Score=128.72 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.....+++.+.+.++.+|||+|||+|.++..++++ ++++|+++|+|+.+++.++++++..++. +++++..|+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChh
Confidence 33456777888888899999999999999999988 5689999999999999999999988876 7899999977532
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
..++||.|++.....+ ..++++++.+.|||||++++..+
T Consensus 85 ~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 3368999999765433 56899999999999999999765
No 86
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.56 E-value=8.4e-14 Score=135.21 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=86.8
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
++.+|||||||+|.++..++.. ++++|+++|+|+++++.+++++++.+++ +++++++|+.++...++||+|+|+. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh
Confidence 4789999999999999998876 4679999999999999999999998886 6999999999876567999999976 33
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+ ++.+++.+.++|||||++++.
T Consensus 120 ~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 120 S-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred C-----HHHHHHHHHHhcCCCCEEEEE
Confidence 2 577889999999999999984
No 87
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.55 E-value=2.6e-14 Score=138.10 Aligned_cols=129 Identities=26% Similarity=0.480 Sum_probs=99.6
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 035870 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (842)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (842)
.+++|+... ++.+.. .|++.+...++.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.++++++.+++
T Consensus 7 ~~gvFs~~~--~d~~t~----lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFSPPR--LDAGTR----LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTTTTS--HHHHHH----HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeCCCC--CCHHHH----HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 356665332 333333 3333333337789999999999999999998 445799999999999999999999999
Q ss_pred CCCeEEEEccccCCccCCCccEEEEcchhhhcCh---hhHHHHHHHHHhccccCcEEEEE
Q 035870 678 QDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGH---EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 678 ~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~---~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
++ ++++..|..+..++++||+|+|+..++.-.+ +....++++..++|||||.+++.
T Consensus 81 ~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 81 EN-VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TT-EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 75 9999999876655689999999988765543 34788999999999999999873
No 88
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.55 E-value=2.4e-14 Score=134.85 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=94.4
Q ss_pred HHHHHHHHH-HcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 615 MRKVSLLIE-KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 615 ~~~~~~l~~-~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
++|.+.++. .|+-..-.++||+|||.|.++..||.+ ..+++++|+|+.+++.|++|+... .+|++++.|+.+..+
T Consensus 28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP 103 (201)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---
T ss_pred HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC
Confidence 345555554 577677789999999999999999998 569999999999999999998753 389999999988878
Q ss_pred CCCccEEEEcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEee
Q 035870 694 ANKYDRIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+++||+||..++++++.+ +.+..+++.+.+.|+|||.+++...
T Consensus 104 ~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 104 EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 899999999999999975 5789999999999999999999654
No 89
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.54 E-value=2.8e-13 Score=135.33 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=111.9
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEEc
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL--------------QDLIRLYLC 686 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--------------~~~v~~~~~ 686 (842)
.+..+...++.+|||+|||.|..+..+|++ |++|+|+|+|+.+++.+.+ +.++ ..+|++.++
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~ 104 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCG 104 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEEC
Confidence 333445567789999999999999999997 9999999999999998743 2222 247899999
Q ss_pred cccCCc--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCC
Q 035870 687 DYRQLA--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLP 764 (842)
Q Consensus 687 d~~~~~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 764 (842)
|+.+++ ..+.||.|+...+++|++.+....+++.+.++|||||++++.+...+.... .. .| ...
T Consensus 105 D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----~g--------Pp--~~~ 170 (218)
T PRK13255 105 DFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL----AG--------PP--FSV 170 (218)
T ss_pred cccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC----CC--------CC--CCC
Confidence 999886 236899999999999999988999999999999999986664444332210 00 11 245
Q ss_pred CHHHHHHHHhhcCCcEEEEEEecC
Q 035870 765 SLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 765 ~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.+++.+.+. .+|+++.++...
T Consensus 171 ~~~el~~~~~--~~~~i~~~~~~~ 192 (218)
T PRK13255 171 SDEEVEALYA--GCFEIELLERQD 192 (218)
T ss_pred CHHHHHHHhc--CCceEEEeeecc
Confidence 7888877664 248887776643
No 90
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.53 E-value=2.7e-13 Score=136.34 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
|.+++...+..-.|.+|||||||.|.++..++.+....|+|+|.+.......+-...-.|....+..+..-+++++..+.
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 44566667655578999999999999999999984457999999987766544333333333344444456777776689
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHHHhh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG-GCLPSLSRITSAMSV 775 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~~~~ 775 (842)
||.|+|.+++.|..+ +-..++++++.|+|||.+++.+...+............+- -.++ -.+||+..+...+++
T Consensus 183 FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa---~m~nv~FiPs~~~L~~wl~r 257 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA---KMRNVWFIPSVAALKNWLER 257 (315)
T ss_pred cCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc---CCCceEEeCCHHHHHHHHHH
Confidence 999999999999976 8999999999999999999998876543311110000000 0011 136899999888887
Q ss_pred cCCcEEEEEEecC
Q 035870 776 ASRLCVEQVENIG 788 (842)
Q Consensus 776 ~~gf~v~~~~~~~ 788 (842)
+||+-+.+-+..
T Consensus 258 -~gF~~v~~v~~~ 269 (315)
T PF08003_consen 258 -AGFKDVRCVDVS 269 (315)
T ss_pred -cCCceEEEecCc
Confidence 899877766544
No 91
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.52 E-value=1.1e-13 Score=125.79 Aligned_cols=127 Identities=24% Similarity=0.386 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcC---CCCC-CeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 612 AAQMRKVSLLIEKAR---VSKG-QEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 612 ~aq~~~~~~l~~~l~---~~~~-~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
+|+.+.++.+.+... +... .+|||+|||.|.+...|++. +....+|+|.|+.+++.|+..+++.++++.|+|.+.
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 456777777776655 3333 39999999999999999998 455699999999999999999999999988999999
Q ss_pred cccCCc-cCCCccEEEEcchhhhcC------hhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 687 DYRQLA-KANKYDRIISCEMIEAVG------HEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 687 d~~~~~-~~~~fD~i~s~~~~~~~~------~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+.+.. ..++||+|.--+.+.+++ ...+..|+..+.++|+|||+++|.++..
T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 998865 568999999888776662 2235778999999999999999977654
No 92
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.52 E-value=2.6e-13 Score=150.57 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...+++.|.+.+++.|++++.+++|++|..+++++.|++.+| ++.||.||+|+..+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch
Confidence 457888898888888999999999999999888888888777 799999999998753
No 93
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=1.5e-13 Score=137.11 Aligned_cols=111 Identities=22% Similarity=0.315 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
....+++.+.++++++|||||||+|..+..+++.. +.+|+++|+|+++++.|++++...++.++++++.+|..+.. .
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 45677888888999999999999999999998873 46999999999999999999999888778999999987654 4
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++||+|++...++++++ ++.+.|||||++++..
T Consensus 140 ~~~fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTIPS--------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchhhH--------HHHHhcCcCcEEEEEE
Confidence 579999999988887753 5778899999998854
No 94
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.52 E-value=4.3e-13 Score=136.83 Aligned_cols=155 Identities=27% Similarity=0.414 Sum_probs=115.3
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~ 706 (842)
.+.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.. ++++...|+.+.+ ..++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999999886 778999999999999999998877653 6899999988776 23789999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC----CCCCCHHHHHHHHhhcCCcEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG----GCLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~----~~~~~~~~~~~~~~~~~gf~v~ 782 (842)
+|+.+ +..+++++.++|+|||.+++..................++.....++ ..+.+..++.+.+.+ +||+++
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~G~~i~ 199 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES-AGLRVK 199 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH-cCCeee
Confidence 99976 78999999999999999998765432111000000011111111111 124567788887776 899999
Q ss_pred EEEecC
Q 035870 783 QVENIG 788 (842)
Q Consensus 783 ~~~~~~ 788 (842)
++....
T Consensus 200 ~~~~~~ 205 (224)
T TIGR01983 200 DVKGLV 205 (224)
T ss_pred eeeeEE
Confidence 887644
No 95
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=1.3e-13 Score=138.91 Aligned_cols=140 Identities=22% Similarity=0.225 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
..+..+++.+.++++.+|||||||+|.++..+++.. ..+|+++|+++++++.|++++++.++. +++++++|..+..
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc
Confidence 345678888889999999999999999999999873 347999999999999999999999984 8999999987654
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-cCccchhhhcccCCCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-RLSSDFIKEYIFPGGCLPS 765 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~p~~~~~~ 765 (842)
...+||+|++.....+++ +.+.+.|||||++++.... .......+ +....|..+.+++...+|-
T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pl 207 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPVGE-YLQVLKRAEKRGGEIIIKDVEPVAFVPL 207 (215)
T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEEcC-CceEEEEEEEeCCEEEEEEeeeEEEEeC
Confidence 446899999987665553 3577889999999986543 22222222 2234466666666555553
No 96
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=5.1e-13 Score=131.75 Aligned_cols=111 Identities=20% Similarity=0.277 Sum_probs=93.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+++.+.+.++.+|||||||+|.++..+++. ++.+|+++|+|+++++.|+++++..++. +++++++|... +..++|
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~~ 98 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGKA 98 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcCC
Confidence 34567778889999999999999999999987 5679999999999999999999888875 79999999753 223689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|+|++....++ +..+++.+.++|||||++++..+
T Consensus 99 D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 99 DAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 99999765433 57789999999999999998654
No 97
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.51 E-value=2.2e-13 Score=145.82 Aligned_cols=131 Identities=14% Similarity=0.242 Sum_probs=106.1
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 035870 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (842)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (842)
..++|+...-+... +.+++.+....+.+|||+|||+|.+++.++++ ++.+|+++|+|+.+++.|+++++.++.
T Consensus 204 ~~gVFs~~~LD~Gt------rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 204 HANVFSRTGLDIGA------RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred cCCccCCCCcChHH------HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 47888877666555 45677777666679999999999999999987 678999999999999999999988765
Q ss_pred C--CCeEEEEccccCCccCCCccEEEEcchhhhc---ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 678 Q--DLIRLYLCDYRQLAKANKYDRIISCEMIEAV---GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 678 ~--~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~---~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. .+++++..|..+..+.++||+|+|+..++.. .++...++|++++++|||||.+++..
T Consensus 278 ~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 278 EALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 3789999997554334689999999888643 33345789999999999999999964
No 98
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.51 E-value=4.5e-13 Score=131.12 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=108.1
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEE
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRI 700 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i 700 (842)
+...+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.++++++.++. +++++.+|..+.. .++||.|
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~V 86 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVI 86 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEE
Confidence 344445556789999999999999999987 55999999999999999999988775 5899999987654 3589999
Q ss_pred EEcchhhhcChh-------------------hHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC
Q 035870 701 ISCEMIEAVGHE-------------------FMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG 761 (842)
Q Consensus 701 ~s~~~~~~~~~~-------------------~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 761 (842)
+++..+++.++. ....+++++.++|||||.+++......
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------------- 144 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------------- 144 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------
Confidence 999887766431 146789999999999999998653322
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 762 CLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 762 ~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
...++.+.+.+ .||.++.+..-+
T Consensus 145 ---~~~~~~~~l~~-~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ---GEPDTFDKLDE-RGFRYEIVAERG 167 (179)
T ss_pred ---ChHHHHHHHHh-CCCeEEEEEEee
Confidence 13455566665 799988877654
No 99
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.51 E-value=1.5e-14 Score=159.28 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=57.1
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChHHHHHhhc
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~~~~~ll~ 277 (842)
..+.+.+| ...+++.|.+.+++.|++|+.+++|++|..++++|. |.+.+|+ +.||+||+|+.++... ++.
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~-l~~ 208 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ-LLP 208 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH-HHH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee-eee
Confidence 34555666 789999999999999999999999999999999997 9999996 9999999999876433 443
No 100
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.50 E-value=2.7e-13 Score=140.17 Aligned_cols=156 Identities=20% Similarity=0.275 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHcCC---CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 035870 613 AQMRKVSLLIEKARV---SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688 (842)
Q Consensus 613 aq~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (842)
.|......+++.+.. ..+.+|||||||+|.++..+++. +..+++++|+|+++++.++++.. ++++++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence 344444555555442 34579999999999999999988 45789999999999999988753 3789999999
Q ss_pred cCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHH
Q 035870 689 RQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLS 767 (842)
Q Consensus 689 ~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (842)
.+.+ ++++||+|++..+++|+.+ +..+++++.++|||||.+++..+...... .. .....+ .+..+++..
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~--~~---~~~~~~---~~~~~~~~~ 159 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLH--EL---RQSFGQ---HGLRYLSLD 159 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHH--HH---HHHHHH---hccCCCCHH
Confidence 9887 6789999999999999976 78999999999999999999765443211 00 011111 233456777
Q ss_pred HHHHHHhhcCCcEEEEEE
Q 035870 768 RITSAMSVASRLCVEQVE 785 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~ 785 (842)
++.+.+.+ . |.....+
T Consensus 160 ~~~~~l~~-~-f~~~~~~ 175 (240)
T TIGR02072 160 ELKALLKN-S-FELLTLE 175 (240)
T ss_pred HHHHHHHH-h-cCCcEEE
Confidence 88777765 4 7655443
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.50 E-value=2.9e-13 Score=134.21 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 608 EDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 608 ~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
+.+..+....+...+.. +.++.+|||||||+|.++..+++. ++.+++|+|+|+++++.|+++.. ++++.++
T Consensus 24 ~~~~~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~ 95 (204)
T TIGR03587 24 QSLVAAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQG 95 (204)
T ss_pred HHHHHHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEe
Confidence 34444444444555444 346789999999999999999887 57899999999999999988642 5788899
Q ss_pred cccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 687 DYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 687 d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
|+.+..++++||+|+++.+++|++.+.+..+++++.+++ ++++++.++..+
T Consensus 96 d~~~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 96 SLFDPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred eccCCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 988722678999999999999998778899999999998 568888776544
No 102
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.49 E-value=3.9e-13 Score=148.95 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
...++..+.+.+.+.|++++++++|++|..+++++.|++++| ++.||.||+|+.++.. .+++. . .++.
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~-~---------~~~i 215 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK-DLLPP-L---------ELPL 215 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh-hhccc-c---------cCCc
Confidence 356788888888888999999999999999888899999888 7999999999987643 33332 1 0111
Q ss_pred eec---eEEEecCCCCc-CCCCCCcc------eeeecc-cCCCc-eEEEEEcc-c----c---------cCCCCCCCCeE
Q 035870 294 VYS---DIFLHRDKRFM-PQNPAAWS------AWNFLE-SFDSK-VCLTYWLN-V----L---------QNLGETSLPFL 347 (842)
Q Consensus 294 ~~~---~v~l~~~~~~~-p~~~~~~~------~~~~~~-~~~~~-~~v~~~~~-~----l---------~~l~~~~~~~~ 347 (842)
.+. .+.+..+..+. +.....+. ...|.. ..+++ ..+..... . . ....+.+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (376)
T PRK11259 216 TPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFL 295 (376)
T ss_pred eEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHH
Confidence 111 11111111100 00000000 001111 11222 33322111 0 0 00000001111
Q ss_pred EecCCCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCcc
Q 035870 348 VTLNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSC 421 (842)
Q Consensus 348 ~~l~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~ 421 (842)
..+.|.... +...|...+| + +++..+.+...+..+|+|++.+|.|+|+ ..|...|+.+|+.|++.+.
T Consensus 296 ~~~~P~~~~--~~~~~~g~~~-~---t~D~~P~ig~~~~~~gl~~~~G~~g~G~-~~ap~~g~~la~li~~~~~ 362 (376)
T PRK11259 296 RNYLPGVGP--CLRGAACTYT-N---TPDEHFIIDTLPGHPNVLVASGCSGHGF-KFASVLGEILADLAQDGTS 362 (376)
T ss_pred HHHCCCCCc--cccceEEecc-c---CCCCCceeecCCCCCCEEEEecccchhh-hccHHHHHHHHHHHhcCCC
Confidence 222332211 4445665544 2 2233444555555789999999999999 8999999999999998763
No 103
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.49 E-value=3.3e-15 Score=130.84 Aligned_cols=95 Identities=24% Similarity=0.452 Sum_probs=65.7
Q ss_pred EEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcchhhhc
Q 035870 634 LEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEMIEAV 709 (842)
Q Consensus 634 LDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~~~~~ 709 (842)
||||||+|.++..++++ +..+++++|+|+.|++.+++++.+.+.. +......+..+.. ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999988 6789999999999999999999887643 3334444433332 33599999999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEE
Q 035870 710 GHEFMEEFFGCCESLLAEDGLL 731 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~ 731 (842)
.+ +..++++++++|||||.+
T Consensus 80 ~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---HHHHHHHHTTT-TSS-EE
T ss_pred hh--HHHHHHHHHHHcCCCCCC
Confidence 44 899999999999999986
No 104
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.49 E-value=7.4e-13 Score=131.63 Aligned_cols=112 Identities=23% Similarity=0.384 Sum_probs=94.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
..+.++.+.++.+|||+|||+|.++..+++. .+.+|+++|+|+++++.++++++..++.++++++.+|..+.. ..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 3457888999999999999999999999876 347999999999999999999999987678999999987643 346
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||.|++... ...+..+++.+.++|||||++++...
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 8999998542 23478899999999999999998543
No 105
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=127.66 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=94.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEccccCCc--cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIR-LYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~-~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
.....|||+|||+|..-.+.--.++++||++|+++.|-+.+.+.++++. +.++. |++++.++++ ++++||.||+..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3344789999999999877766679999999999999999999998874 44676 9999999999 889999999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+++.+.+ +.+.++++.|+|||||++++-....
T Consensus 154 vLCSve~--~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 154 VLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEeccCC--HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999866 8999999999999999999866554
No 106
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.49 E-value=1.1e-12 Score=136.28 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=57.5
Q ss_pred CceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 205 PQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 205 ~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
+.++......+.+++.|.+++++.|++|+++++|.+|..++.+..|.+.+|+++.||.+|+|+.
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 3444444778899999999999999999999999999999989999999998999999999976
No 107
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.49 E-value=5.4e-13 Score=137.58 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=113.0
Q ss_pred hHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHH
Q 035870 585 NELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQ 664 (842)
Q Consensus 585 ~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~ 664 (842)
++.+...+++.|.|.++..+... ..++.+.+. ..++.+|||+|||+|.+++.+++....+|+|+|+|+.+
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt~--------~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~ 154 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTTR--------LCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA 154 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHHH--------HHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 45556789999999888754321 111222221 45789999999999999998877633469999999999
Q ss_pred HHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccc
Q 035870 665 LKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYN 744 (842)
Q Consensus 665 ~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~ 744 (842)
++.|+++++.+++.+++.+..+| .+||+|+++...+ ....+++++.++|||||+++++.+...
T Consensus 155 l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~~~----- 217 (250)
T PRK00517 155 VEAARENAELNGVELNVYLPQGD-------LKADVIVANILAN-----PLLELAPDLARLLKPGGRLILSGILEE----- 217 (250)
T ss_pred HHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECcHh-----
Confidence 99999999998875455544433 2799999975433 257889999999999999999754321
Q ss_pred cccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 745 EYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 745 ~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
...++.+.+.+ .||++......+
T Consensus 218 --------------------~~~~v~~~l~~-~Gf~~~~~~~~~ 240 (250)
T PRK00517 218 --------------------QADEVLEAYEE-AGFTLDEVLERG 240 (250)
T ss_pred --------------------hHHHHHHHHHH-CCCEEEEEEEeC
Confidence 23455666665 799988776543
No 108
>PRK06202 hypothetical protein; Provisional
Probab=99.49 E-value=2.2e-13 Score=139.39 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=109.5
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-----TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i 700 (842)
..++.+|||||||+|.++..+++. ++.+|+|+|+|++|++.|+++.... ++++.+.|..+++ ++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356789999999999999888753 2469999999999999999886433 4667777766665 56799999
Q ss_pred EEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-ccchh-hhcccCC-----CCCCCHHHHHHHH
Q 035870 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-SSDFI-KEYIFPG-----GCLPSLSRITSAM 773 (842)
Q Consensus 701 ~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~p~-----~~~~~~~~~~~~~ 773 (842)
+++.++||++++....+++++.++++ |.+++.++..+...+..+.. ...+. ..++-.. ...++.+++.+.+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999998777899999999998 67777776665332211111 00111 0111111 1356888888777
Q ss_pred hhcCCcEEEEEEecC
Q 035870 774 SVASRLCVEQVENIG 788 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~ 788 (842)
.+ ||++.....++
T Consensus 212 ~~--Gf~~~~~~~~~ 224 (232)
T PRK06202 212 PQ--GWRVERQWPFR 224 (232)
T ss_pred hC--CCeEEecccee
Confidence 65 99987765543
No 109
>PRK06922 hypothetical protein; Provisional
Probab=99.48 E-value=2.9e-13 Score=150.61 Aligned_cols=112 Identities=18% Similarity=0.287 Sum_probs=95.0
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEE
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRII 701 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~ 701 (842)
...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++....+. +++++++|..+++ ++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEE
Confidence 3446889999999999999988886 678999999999999999998766543 6889999988765 467999999
Q ss_pred Ecchhhhc-----------ChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 702 SCEMIEAV-----------GHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 702 s~~~~~~~-----------~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++.++|++ +.++...+++++.++|||||.+++.+...+
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 99999875 235678999999999999999999875444
No 110
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.48 E-value=5.5e-13 Score=149.37 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=51.9
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC-----cEEeCCEEEEccChHH
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG-----SREFYNSCVMALHAPD 271 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VV~A~p~~~ 271 (842)
.++.+.+| ...++..|.+.+++.|++|+.+++|++|+.+++++.|.+.++ .+++||+||+|+.++.
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 34444433 457888999999999999999999999998888777655432 3689999999998774
No 111
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.47 E-value=1.4e-12 Score=145.90 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEEeCCCcEEeCCEEEEccChHHH--HHhhcCCCChHHHHhccc
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIVCGDGSREFYNSCVMALHAPDA--LKILGNQATFDETRILGA 290 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VV~A~p~~~~--~~ll~~~~~~~~~~~l~~ 290 (842)
..++..|++.+.++|++++.+++|++|+.. ++++ .|+|.+| ++.+++||+++..+.. .+++....+ -
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~--------~ 253 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLP--------I 253 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCC--------c
Confidence 467788889999999999999999999864 4554 5888888 7999999999876643 222221110 0
Q ss_pred cceeeceEEEecCC--CCcCCCCCCcc--eeeecccCCCceEEEEEcccccCCC--------CCCCCeEEecCCCCCCcc
Q 035870 291 FQYVYSDIFLHRDK--RFMPQNPAAWS--AWNFLESFDSKVCLTYWLNVLQNLG--------ETSLPFLVTLNPDHVPEH 358 (842)
Q Consensus 291 ~~~~~~~v~l~~~~--~~~p~~~~~~~--~~~~~~~~~~~~~v~~~~~~l~~l~--------~~~~~~~~~l~~~~~~~~ 358 (842)
.++. ..++ .+++ ++++. ...+. ...+...++++..+....+...... +.+.+.+..+.|......
T Consensus 254 ~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 330 (407)
T TIGR01373 254 ESHP-LQAL-VSEPLKPIIDT-VVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVR 330 (407)
T ss_pred Cccc-ceEE-EecCCCCCcCC-eEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 0110 0111 1111 11110 00000 0111112233333332111100000 000111122333333333
Q ss_pred eeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 359 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 359 ~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
+...|...+|. +++..+.+... +.+|+|++.++.|.|+ ..|..+|+.+|+.|++..
T Consensus 331 ~~~~w~G~~~~----t~D~~PiIg~~-~~~gl~~a~G~~g~G~-~~ap~~G~~la~li~~~~ 386 (407)
T TIGR01373 331 MLRSWGGIVDV----TPDGSPIIGKT-PLPNLYLNCGWGTGGF-KATPASGTVFAHTLARGE 386 (407)
T ss_pred eEEEecccccc----CCCCCceeCCC-CCCCeEEEeccCCcch-hhchHHHHHHHHHHhCCC
Confidence 55677655542 22333344433 2589999999999999 899999999999998765
No 112
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1e-12 Score=132.73 Aligned_cols=132 Identities=23% Similarity=0.393 Sum_probs=108.2
Q ss_pred CcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH
Q 035870 596 MTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE 674 (842)
Q Consensus 596 ~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~ 674 (842)
++-.+++|+...-|... +.+++.+....+.+|||+|||+|.+++.+++. +..+++.+|+|..+++.|++++..
T Consensus 131 ~~t~pGVFS~~~lD~GS------~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 131 FKTLPGVFSRDKLDKGS------RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred EEeCCCCCcCCCcChHH------HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence 34468899888777776 57788888887779999999999999999999 678999999999999999999999
Q ss_pred cCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHH----HHHHHHHhccccCcEEEEEee
Q 035870 675 AGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFME----EFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 675 ~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~----~~~~~~~~~LkpgG~~~~~~~ 736 (842)
++++. ..+...|..+-.. ++||.|+||..||. +.+-.. +++++..+.|++||.+.|..-
T Consensus 205 N~~~~-~~v~~s~~~~~v~-~kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 205 NGVEN-TEVWASNLYEPVE-GKFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cCCCc-cEEEEeccccccc-ccccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 98873 3666666443333 49999999999874 333334 899999999999999998543
No 113
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.47 E-value=3.7e-13 Score=139.15 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=100.7
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchH----HHHHHHHh-c-----CCEEEEEcCCHHHHHHHHHH
Q 035870 602 VFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGT----LAIEIVKR-T-----GCKYTGITLSEEQLKYAEMK 671 (842)
Q Consensus 602 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~gid~s~~~~~~a~~~ 671 (842)
+|-.+...++.-+...+..+++.....++.+|||+|||+|. +++.+++. + +.+|+|+|+|++|++.|++.
T Consensus 72 ~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 72 RFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred cccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 34333444555444444455544444566899999999996 56666654 2 46899999999999999985
Q ss_pred HH----HcC----------------------CCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhc
Q 035870 672 VK----EAG----------------------LQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESL 724 (842)
Q Consensus 672 ~~----~~~----------------------l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~ 724 (842)
+- -.+ +..+|+|.+.|+.+.+ +.++||+|+|..+++|++++....++++++++
T Consensus 152 ~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~ 231 (264)
T smart00138 152 IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA 231 (264)
T ss_pred CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHH
Confidence 31 011 1247899999998877 57899999999999999987788999999999
Q ss_pred cccCcEEEEE
Q 035870 725 LAEDGLLVLQ 734 (842)
Q Consensus 725 LkpgG~~~~~ 734 (842)
|||||++++.
T Consensus 232 L~pGG~L~lg 241 (264)
T smart00138 232 LKPGGYLFLG 241 (264)
T ss_pred hCCCeEEEEE
Confidence 9999999994
No 114
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7.8e-13 Score=134.62 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=117.7
Q ss_pred HhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHH
Q 035870 589 SLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYA 668 (842)
Q Consensus 589 ~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a 668 (842)
..-+|+.|.|..|..++....++. ++.+ .++|.+|||+|||+|.+++.+++....+|+|+|+++.+++.|
T Consensus 132 ~i~lDPGlAFGTG~HpTT~lcL~~---------Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa 201 (300)
T COG2264 132 NIELDPGLAFGTGTHPTTSLCLEA---------LEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAA 201 (300)
T ss_pred EEEEccccccCCCCChhHHHHHHH---------HHHh-hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHH
Confidence 467899999888876654322222 2222 248999999999999999999987334699999999999999
Q ss_pred HHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC
Q 035870 669 EMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748 (842)
Q Consensus 669 ~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~ 748 (842)
+++++.++++..++....+....+..++||+||+|= +-.+ +..+...+.++|||||+++++.|....
T Consensus 202 ~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA~v----l~~La~~~~~~lkpgg~lIlSGIl~~q-------- 268 (300)
T COG2264 202 RENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LAEV----LVELAPDIKRLLKPGGRLILSGILEDQ-------- 268 (300)
T ss_pred HHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hHHH----HHHHHHHHHHHcCCCceEEEEeehHhH--------
Confidence 999999988754444454555554557999999985 3333 578889999999999999997754321
Q ss_pred ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 749 SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 749 ~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
.+.+.+++.+ .||++.......
T Consensus 269 -----------------~~~V~~a~~~-~gf~v~~~~~~~ 290 (300)
T COG2264 269 -----------------AESVAEAYEQ-AGFEVVEVLERE 290 (300)
T ss_pred -----------------HHHHHHHHHh-CCCeEeEEEecC
Confidence 2345566655 799998876643
No 115
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.47 E-value=1.5e-12 Score=153.95 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=54.9
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
..+.+.+| ...++++|.+.+++ |++|+.+++|++|+.++++|.|.+.+|..+.||.||+|+..+.
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 34444444 46899999999988 9999999999999998888999998887788999999998764
No 116
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.46 E-value=5.2e-13 Score=133.79 Aligned_cols=112 Identities=22% Similarity=0.258 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
-.....+++.+.++++++|||||||+|.++..+++.. +.+|+++|+++++++.|+++++..++. +++++++|..+..
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~ 140 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence 3455678888999999999999999999999998873 369999999999999999999998875 7999999987654
Q ss_pred -cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 -KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 -~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..++||+|++....++++ +.+.+.|||||++++..
T Consensus 141 ~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 557899999987765553 34566899999998853
No 117
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.46 E-value=5.7e-13 Score=132.04 Aligned_cols=114 Identities=25% Similarity=0.353 Sum_probs=98.3
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCC
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANK 696 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~ 696 (842)
+..........+|||+|||+|.+++.+|++ ..+++++||+++++.+.|+++++.++++++|+++++|+.++. ...+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 344555666889999999999999999999 569999999999999999999999999999999999998886 3457
Q ss_pred ccEEEEcchhhhcCh----------------hhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRIISCEMIEAVGH----------------EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~s~~~~~~~~~----------------~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||+|+||..+.-.+. -.++++++...++|||||++.+.
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999999987643322 24789999999999999999983
No 118
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.46 E-value=1.5e-12 Score=136.83 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=103.7
Q ss_pred HHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHH
Q 035870 587 LFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLK 666 (842)
Q Consensus 587 ~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~ 666 (842)
-....+++.|.+.++..+.. +....+++.+ ..++++|||+|||+|.+++.+++....+|+++|+|+.+++
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt---------~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~ 196 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTT---------SLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVE 196 (288)
T ss_pred cEEEEECCCCcccCCCCHHH---------HHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHH
Confidence 34578899998887765432 1112233333 3478999999999999999988764458999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 667 YAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 667 ~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.|++++..+++.+++.+...|.... .+++||+|+++...++ +..++.++.++|||||++++..+
T Consensus 197 ~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 197 SARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999999887788887774333 3468999999876443 56889999999999999999765
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.45 E-value=3.4e-12 Score=119.54 Aligned_cols=114 Identities=23% Similarity=0.268 Sum_probs=99.6
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
...+.+|.++|+++++|||||+|..++.++.. +.++|+++|-++++++..++|+++.|.+ +++++.+|+.+.. ...+
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~~ 102 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLPS 102 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCCC
Confidence 35578999999999999999999999999955 7889999999999999999999999965 9999999987765 2237
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
||.|+..+. . ..+.+++.+...|||||++++..++..
T Consensus 103 ~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 103 PDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 999999876 2 268999999999999999999877643
No 120
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=4.4e-12 Score=128.66 Aligned_cols=146 Identities=18% Similarity=0.277 Sum_probs=107.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
+..++..+.+.++.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++...++ +++++++|+.+..++++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCe
Confidence 334555666788899999999999999999987334999999999999999999988776 588999998765455789
Q ss_pred cEEEEcchhhhcC-------------------hhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc
Q 035870 698 DRIISCEMIEAVG-------------------HEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF 758 (842)
Q Consensus 698 D~i~s~~~~~~~~-------------------~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 758 (842)
|+|+++..+.... .+.+..+++++.++|||||++++......
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------------------- 163 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------------------- 163 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-------------------
Confidence 9999986433221 11256788999999999999997432221
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEEEecCccH
Q 035870 759 PGGCLPSLSRITSAMSVASRLCVEQVENIGIHY 791 (842)
Q Consensus 759 p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y 791 (842)
...++.+.+.+ .||.+.........+
T Consensus 164 ------~~~~~~~~l~~-~g~~~~~~~~~~~~~ 189 (223)
T PRK14967 164 ------GVERTLTRLSE-AGLDAEVVASQWIPF 189 (223)
T ss_pred ------CHHHHHHHHHH-CCCCeEEEEeeccCc
Confidence 22344555555 688776665544433
No 121
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=8.6e-12 Score=124.63 Aligned_cols=237 Identities=16% Similarity=0.160 Sum_probs=143.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee--CCee-eecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF--DGVD-LDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~--~g~~-~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|++|||||++|+..|..|++.|++|+|+|+++.+||.|.+... .|.. .-.|+|.|+. ....+++.+.++---..-+
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-~~~~Vwdyv~~F~e~~~Y~ 81 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-DNKRVWDYVNQFTEFNPYQ 81 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-CchHHHHHHhhhhhhhhhc
Confidence 8999999999999999999999999999999999999999887 5654 4579999974 6778888887652111111
Q ss_pred cceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCC
Q 035870 79 DMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYS 158 (842)
Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (842)
... ....+|..+..+ .++..+-.-......+... ..+...........+..++++-..+. .+
T Consensus 82 hrV--la~~ng~~~~lP--~nl~ti~ql~G~~~~p~~a-------------~~~i~~~~~~~~~~~~q~~ee~ais~-vg 143 (374)
T COG0562 82 HRV--LALVNGQLYPLP--FNLNTINQLFGKNFTPDEA-------------RKFIEEQAAEIDIAEPQNLEEQAISL-VG 143 (374)
T ss_pred cce--eEEECCeeeecc--ccHHHHHHHhCccCCHHHH-------------HHHHHHhhccccccchhhhhhHHHHH-HH
Confidence 111 122444443332 2222211111111222211 11111111111222444555544443 56
Q ss_pred HHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccc-cccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCC
Q 035870 159 ELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHL-LQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237 (842)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~ 237 (842)
..+.+.++.++..+.|+.+++++ ++..+-+.--.... ..-+....--.|++|...+.+.|++.= ..+|++||.
T Consensus 144 ~~LY~~f~kgYT~KQWG~~p~eL---pasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp---~I~V~Lntd 217 (374)
T COG0562 144 RDLYEAFFKGYTEKQWGLDPKEL---PASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHP---NIDVRLNTD 217 (374)
T ss_pred HHHHHHHhccccHHHhCCChHHC---CHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCC---CceEEecCc
Confidence 77888999999999999999998 44433221100000 011222222357889999988888743 679999988
Q ss_pred eeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHH
Q 035870 238 VCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDAL 273 (842)
Q Consensus 238 V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~ 273 (842)
-..+..... .+.+..||-|-|.+..-
T Consensus 218 ~~~~~~~~~----------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 218 FFDVKDQLR----------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred HHHHhhhhc----------ccCCCceEEecchHhhh
Confidence 776643322 14566899998876544
No 122
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.44 E-value=7.6e-14 Score=131.75 Aligned_cols=180 Identities=26% Similarity=0.428 Sum_probs=133.0
Q ss_pred hhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC
Q 035870 574 RRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC 653 (842)
Q Consensus 574 ~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~ 653 (842)
..-|+.-||.-.+-|+..|-....|+-. .+++.++.+++..+-.++||+|||||..+..+-.. ..
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP--------------~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~ 148 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSVP--------------ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-AD 148 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccH--------------HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hh
Confidence 3567778887778888877777777532 46678888888888899999999999999888665 56
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcE
Q 035870 654 KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
+.+|+|||+.|++.|.++ |+-+ ++.+.|...+. .+++||+|++..++-+++. ++.+|-.+..+|+|||.
T Consensus 149 ~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGl 220 (287)
T COG4976 149 RLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGL 220 (287)
T ss_pred hccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhcc--hhhHHHHHHHhcCCCce
Confidence 899999999999999887 3322 34555543222 4579999999999999998 99999999999999999
Q ss_pred EEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEec
Q 035870 731 LVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
+.++.-+.++..- |. +-|...+-..+..+..+.+..||++..+++.
T Consensus 221 faFSvE~l~~~~~--------f~---l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 221 FAFSVETLPDDGG--------FV---LGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred EEEEecccCCCCC--------ee---cchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 9998766555420 11 1122222233334444444589999998874
No 123
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.44 E-value=7.8e-13 Score=150.47 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=99.2
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC--Cc-cC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ--LA-KA 694 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~~ 694 (842)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.+++.. +..++++++++|+.+ ++ ++
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC
Confidence 456677777677889999999999999999987 679999999999999876532 233479999999863 34 56
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
++||+|+++.+++|++++....++++++++|||||++++.+...
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 79999999999999998778999999999999999999977654
No 124
>PRK04266 fibrillarin; Provisional
Probab=99.43 E-value=2.3e-12 Score=129.18 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=101.2
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC----ccCCCcc
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL----AKANKYD 698 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~~~fD 698 (842)
.+.++++.+|||+|||+|.++..+++.. ..+|+++|+|++|++.+.++++.. .++.++.+|..+. +..++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 5788999999999999999999999873 468999999999999888877653 3799999998652 1235799
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~g 778 (842)
+|++... .......++++++++|||||++++.....+. +|... | . ....+.++.+.+ +|
T Consensus 144 ~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~----------d~~~~---~-~--~~~~~~~~~l~~-aG 202 (226)
T PRK04266 144 VIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSI----------DVTKD---P-K--EIFKEEIRKLEE-GG 202 (226)
T ss_pred EEEECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccc----------cCcCC---H-H--HHHHHHHHHHHH-cC
Confidence 9996422 1112345689999999999999995322110 11000 0 0 011334466665 89
Q ss_pred cEEEEEEecCc
Q 035870 779 LCVEQVENIGI 789 (842)
Q Consensus 779 f~v~~~~~~~~ 789 (842)
|++...+++++
T Consensus 203 F~~i~~~~l~p 213 (226)
T PRK04266 203 FEILEVVDLEP 213 (226)
T ss_pred CeEEEEEcCCC
Confidence 99999988764
No 125
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.42 E-value=8.5e-13 Score=131.27 Aligned_cols=106 Identities=25% Similarity=0.272 Sum_probs=88.3
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-cCCc---cCCCccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY-RQLA---KANKYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~---~~~~fD~i~s~ 703 (842)
++.+|||||||+|.++..+++. ++.+|+|+|+|+++++.|++++...+++ +++++++|+ ..++ ++++||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6789999999999999999887 5679999999999999999999988874 799999998 6554 35789999997
Q ss_pred chhhhcC------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 704 EMIEAVG------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....+.. ....+.++++++++|||||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 6543221 1124789999999999999999853
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.3e-12 Score=123.67 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-CccC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LAKA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~ 694 (842)
..+..|++.|.++++++|||||||+|..+..+|+. ..+|+.+|..++..+.|+++++..|+. ||.++++|-.. +++.
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCC
Confidence 45678999999999999999999999999999998 559999999999999999999999997 59999999544 5566
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
..||+|+.......+|+ .+.+.|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 89999999999888875 34556999999999554
No 127
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.42 E-value=1.4e-12 Score=145.26 Aligned_cols=198 Identities=12% Similarity=0.050 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccc
Q 035870 214 SHSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQ 292 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~ 292 (842)
...++.+|++.++++| ..+..+++|..++.+++.+.|.|.+|+ +.||+||+|+.++...-. .. .. .-.++
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~-~~-~~------~~~~~ 225 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA-AT-LG------ELPLP 225 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH-Hh-cC------CCcCc
Confidence 3689999999999999 567779999999986445789999985 999999999998754322 11 00 00001
Q ss_pred eee---ceEEEecCCCCcCCCC--CCc---ceeeeccc-CCCceEEEEEcccc---cC----CCC---CCCCeEEecCCC
Q 035870 293 YVY---SDIFLHRDKRFMPQNP--AAW---SAWNFLES-FDSKVCLTYWLNVL---QN----LGE---TSLPFLVTLNPD 353 (842)
Q Consensus 293 ~~~---~~v~l~~~~~~~p~~~--~~~---~~~~~~~~-~~~~~~v~~~~~~l---~~----l~~---~~~~~~~~l~~~ 353 (842)
..+ ..+.+.......+... ..+ ..-.|... .++...+....... .. ... .+.+....+.|.
T Consensus 226 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~ 305 (387)
T COG0665 226 LRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPG 305 (387)
T ss_pred cccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhCcc
Confidence 111 0111111111110000 000 00111111 23333332211110 00 000 001111222232
Q ss_pred CCCcceeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCcccccC
Q 035870 354 HVPEHTLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCTLSS 425 (842)
Q Consensus 354 ~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~~~~ 425 (842)
.....+...|...+|..+ ++..+.+.. .. .+|||+|.+|.+.|+ ..+..+|+.+|+.|++.+.+...
T Consensus 306 l~~~~~~~~w~g~~~~t~---pd~~P~iG~~~~-~~~l~~a~G~~~~G~-~~~p~~g~~lA~li~g~~~~~~~ 373 (387)
T COG0665 306 LADAGIEAAWAGLRPPTT---PDGLPVIGRAAP-LPNLYVATGHGGHGF-TLAPALGRLLADLILGGEPELDL 373 (387)
T ss_pred ccccccceeeeccccCCC---CCCCceeCCCCC-CCCEEEEecCCCcCh-hhccHHHHHHHHHHcCCCCCCCc
Confidence 222233446766555332 233334443 33 789999999999999 89999999999999997744333
No 128
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.42 E-value=1.3e-12 Score=140.57 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=96.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
..++....++++++|||+|||+|.+++.++.. +.+++|+|+|+.|++.++++++..++++ +++.++|+.+++ .+++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCC
Confidence 35566667889999999999999999988775 8999999999999999999999999875 899999999988 56799
Q ss_pred cEEEEcchhhh-------cChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~-------~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|.|+++..+.. ...+.+..+++++.++|||||++++..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99999865321 111236889999999999999998854
No 129
>PLN03075 nicotianamine synthase; Provisional
Probab=99.42 E-value=1.8e-12 Score=132.70 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred CCCCCCeEEEeccCchHH-HHHHHH-h-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCCeEEEEccccCCc-cCCCccEE
Q 035870 626 RVSKGQEVLEIGCGWGTL-AIEIVK-R-TGCKYTGITLSEEQLKYAEMKVKE-AGLQDLIRLYLCDYRQLA-KANKYDRI 700 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~-~~~la~-~-~~~~v~gid~s~~~~~~a~~~~~~-~~l~~~v~~~~~d~~~~~-~~~~fD~i 700 (842)
...++.+|+|||||.|.+ ++.+++ . ++.+++|+|+|+++++.|++.++. .++.++++|+.+|+.+.. ..++||+|
T Consensus 120 ~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 120 VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 334778999999997755 343443 3 678999999999999999999964 888889999999998876 44789999
Q ss_pred EEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 701 ~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++. +++++..+.+.++++++.+.|+|||.+++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 8888866679999999999999999999965
No 130
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.41 E-value=3.2e-12 Score=136.51 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=100.6
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 035870 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (842)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (842)
-++.|.....+... +.+++.+......+|||+|||+|.++..++++ ++.+|+++|+|+.+++.|+++++.+++
T Consensus 172 ~pgvFs~~~lD~gt------~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l 245 (342)
T PRK09489 172 LPGVFSRDGLDVGS------QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL 245 (342)
T ss_pred CCCCCCCCCCCHHH------HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 35666655444443 34556565555568999999999999999988 567999999999999999999999887
Q ss_pred CCCeEEEEccccCCccCCCccEEEEcchhhhcC---hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 678 QDLIRLYLCDYRQLAKANKYDRIISCEMIEAVG---HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 678 ~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~---~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. .+++..|..+. ..++||+|+|+..+|+.. .+....+++++.++|||||.+++..
T Consensus 246 ~--~~~~~~D~~~~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 E--GEVFASNVFSD-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred C--CEEEEcccccc-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 4 57788886543 247899999999987632 2346899999999999999999854
No 131
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.40 E-value=6.8e-12 Score=118.37 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=112.1
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~ 703 (842)
++||.+|||+|||.|.+..++.+..+++..|+|++++.+..+.++ .+.++++|+.+-- ++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 478999999999999999999987799999999999998888766 4678999986543 78999999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc--cccc---c--Cccchh-hhcccCCCCCCCHHHHHHHHhh
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER--YNEY---R--LSSDFI-KEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~--~~~~---~--~~~~~~-~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
.+++++.+ +..+++++.|+ |...+++........ ..-. + .+..+- .=|-.|+-++.|+.++.+...+
T Consensus 83 qtLQ~~~~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 83 QTLQAVRR--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred hHHHhHhH--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 99999965 88888888665 667777554332110 0000 0 010110 1134477788899999877666
Q ss_pred cCCcEEEEEEecCccH
Q 035870 776 ASRLCVEQVENIGIHY 791 (842)
Q Consensus 776 ~~gf~v~~~~~~~~~y 791 (842)
.|++|++...+....
T Consensus 158 -~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 158 -LGIRIEERVFLDGGR 172 (193)
T ss_pred -CCCEEEEEEEEcCCC
Confidence 799999988776544
No 132
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.39 E-value=2.8e-12 Score=127.18 Aligned_cols=153 Identities=15% Similarity=0.214 Sum_probs=105.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-Cc--cCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LA--KAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~--~~~ 695 (842)
+.+.+.+ +++.+|||||||+|.++..+++..+++++|+|+|+++++.++++ +++++++|+.+ ++ +++
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCC
Confidence 3444444 47789999999999999999877678899999999999988642 47888999865 32 457
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc--cccccC-ccchhhh--cc---cCCCCCCCHH
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER--YNEYRL-SSDFIKE--YI---FPGGCLPSLS 767 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~--~~~~~~-~~~~~~~--~i---~p~~~~~~~~ 767 (842)
+||+|+++.+++|+.+ +..+++++.+.+++ +++......... ...+.. ...+... +. -|....++.+
T Consensus 75 sfD~Vi~~~~l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (194)
T TIGR02081 75 SFDYVILSQTLQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA 149 (194)
T ss_pred CcCEEEEhhHhHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHH
Confidence 8999999999999976 78899998887654 444322111000 000000 0001111 00 1334577999
Q ss_pred HHHHHHhhcCCcEEEEEEec
Q 035870 768 RITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~~~ 787 (842)
++.+.+++ +||++.+...+
T Consensus 150 ~~~~ll~~-~Gf~v~~~~~~ 168 (194)
T TIGR02081 150 DFEDLCGE-LNLRILDRAAF 168 (194)
T ss_pred HHHHHHHH-CCCEEEEEEEe
Confidence 99988876 89999887765
No 133
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=3.5e-12 Score=131.88 Aligned_cols=159 Identities=23% Similarity=0.308 Sum_probs=112.7
Q ss_pred HHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHH
Q 035870 586 ELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQL 665 (842)
Q Consensus 586 ~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~ 665 (842)
+.....+||.|.|.+|..++. +..-.+++.+ ..++++|||+|||+|.+++.+++....+|+++|+++.++
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT---------~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av 197 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTT---------RLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV 197 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHH---------HHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH
T ss_pred CcEEEEECCCCcccCCCCHHH---------HHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH
Confidence 344567899999887765432 1222223333 467889999999999999999987445899999999999
Q ss_pred HHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc
Q 035870 666 KYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE 745 (842)
Q Consensus 666 ~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~ 745 (842)
+.|+++++.+++.+++.+. ...+. ..++||+|++|-..+- +..++..+.++|||||+++++.+....
T Consensus 198 ~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~~v-----L~~l~~~~~~~l~~~G~lIlSGIl~~~----- 264 (295)
T PF06325_consen 198 EAARENAELNGVEDRIEVS--LSEDL-VEGKFDLVVANILADV-----LLELAPDIASLLKPGGYLILSGILEEQ----- 264 (295)
T ss_dssp HHHHHHHHHTT-TTCEEES--CTSCT-CCS-EEEEEEES-HHH-----HHHHHHHCHHHEEEEEEEEEEEEEGGG-----
T ss_pred HHHHHHHHHcCCCeeEEEE--Eeccc-ccccCCEEEECCCHHH-----HHHHHHHHHHhhCCCCEEEEccccHHH-----
Confidence 9999999999999877653 22222 2389999999855443 577888899999999999997764321
Q ss_pred ccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 746 YRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 746 ~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
..++.+++. + ||++......+.
T Consensus 265 --------------------~~~v~~a~~-~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 265 --------------------EDEVIEAYK-Q-GFELVEEREEGE 286 (295)
T ss_dssp --------------------HHHHHHHHH-T-TEEEEEEEEETT
T ss_pred --------------------HHHHHHHHH-C-CCEEEEEEEECC
Confidence 345556664 4 999887766543
No 134
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=1.7e-12 Score=117.61 Aligned_cols=106 Identities=26% Similarity=0.502 Sum_probs=89.8
Q ss_pred CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcchh
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEMI 706 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~~ 706 (842)
|.+|||+|||+|.++..+++....+++|+|+++..++.+++++...++.++++++++|+.+.. ++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999988438999999999999999999999999889999999988775 56899999999877
Q ss_pred hhcC------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 707 EAVG------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ~~~~------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.... .+....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6431 1235788999999999999999854
No 135
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.38 E-value=8.1e-12 Score=130.72 Aligned_cols=108 Identities=22% Similarity=0.369 Sum_probs=88.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
+++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.+++.++++++++|+.+..++++||+|+++...
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45679999999999999999987 56899999999999999999999999877899999998553344589999998431
Q ss_pred ------hhcC-----------------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 707 ------EAVG-----------------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ------~~~~-----------------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++. -+.+..+++++.++|+|||++++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 1234678999999999999999853
No 136
>PRK14968 putative methyltransferase; Provisional
Probab=99.37 E-value=1.6e-11 Score=121.53 Aligned_cols=114 Identities=25% Similarity=0.354 Sum_probs=92.3
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEccccCCccCCCccE
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL-IRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~~d~~~~~~~~~fD~ 699 (842)
+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.+++++..+++.++ +.++++|..+...+.+||+
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 93 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDV 93 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceE
Confidence 344444578889999999999999999998 89999999999999999999998887544 8999999766544458999
Q ss_pred EEEcchhhhcC-------------------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 700 IISCEMIEAVG-------------------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 700 i~s~~~~~~~~-------------------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+++..+.+.+ ...+..+++++.++|||||.+++..
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99986653311 2235678999999999999988753
No 137
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.35 E-value=1.4e-11 Score=122.46 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=91.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-cCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-KAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~~ 695 (842)
..+++.+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.++++++..++. +++++.+|+.+. + ...
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCC
Confidence 35677888889999999999999999999876 5689999999999999999999988885 799999998652 2 224
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+|.|+... ...+..+++++.++|||||++++...
T Consensus 109 ~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 568776532 12468999999999999999999764
No 138
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.35 E-value=3.3e-12 Score=126.38 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=88.4
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~s~ 703 (842)
+..+|||||||+|.++..++++ ++.+|+|+|+|+++++.|++++...++. +++++++|+.+++ +++++|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999987 6789999999999999999999998886 8999999997653 34689999998
Q ss_pred chhhhcChh------hHHHHHHHHHhccccCcEEEEEe
Q 035870 704 EMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....+.... ..+.++++++++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 654332211 12679999999999999999854
No 139
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.35 E-value=8e-12 Score=125.91 Aligned_cols=110 Identities=22% Similarity=0.199 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
....+++.+.++++++|||||||+|.++..+++. ..+|+++|+++++++.|+++++..++. ++++..+|..+.. ..+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCC
Confidence 3456777888899999999999999999988877 469999999999999999999998886 6999999976543 447
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||+|++...+++++ +.+.+.|+|||++++...
T Consensus 144 ~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 899999987766553 356789999999998654
No 140
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=1.6e-11 Score=129.47 Aligned_cols=105 Identities=23% Similarity=0.375 Sum_probs=86.9
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh--
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI-- 706 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~-- 706 (842)
..+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.+++.++++++++|+.+..++++||+|+|+...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 368999999999999999987 57899999999999999999999999877899999998654344689999998421
Q ss_pred ----h-------hcC----------hhhHHHHHHHHHhccccCcEEEEE
Q 035870 707 ----E-------AVG----------HEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ----~-------~~~----------~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
. |-+ -+.+..+++++.++|+|||++++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 111 123568899999999999999984
No 141
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.32 E-value=1.3e-11 Score=131.26 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=95.8
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~ 695 (842)
.+++.+....+..+||||||+|.++..+|++ ++..++|+|+++.+++.|.+++...++. ++.++++|+..+. +++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC
Confidence 4455555566779999999999999999998 7789999999999999999999999986 7999999987652 678
Q ss_pred CccEEEEcchhhhcChhh----HHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEF----MEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~----~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
++|.|+++....+....+ .+.++++++|+|||||.+.+.+-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 999999976544432211 26899999999999999999653
No 142
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.31 E-value=4.5e-12 Score=138.59 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=46.4
Q ss_pred eEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 207 WLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 207 ~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.|....-...+++.|.+.+++.|++|+++++|.+|..++++ +.|.+++++++.||.||+|+..
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 33334567889999999999999999999999999998888 7899977779999999999764
No 143
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.31 E-value=9.4e-12 Score=122.75 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL- 691 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~- 691 (842)
-..+..+++.+.++||++|||||||+|..+..+++..+ .+|+++|+.++.++.|+++++..++. +|+++++|...-
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcc
Confidence 35567889999999999999999999999999998733 47999999999999999999999886 899999996554
Q ss_pred ccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 692 AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 ~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+..++||+|++......++. .+.+.||+||++++-.-
T Consensus 137 ~~~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 35678999999988876653 35566899999998543
No 144
>PTZ00146 fibrillarin; Provisional
Probab=99.31 E-value=5.3e-11 Score=121.40 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=98.1
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANK 696 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~ 696 (842)
+.+.++++++|||+|||+|.++.++++.. ..+|+++|+|+.+.+...+.++.. .+|.+++.|++... ..++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC
Confidence 45568999999999999999999999984 368999999998665555544332 37899999986521 2358
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHH----HHH
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRI----TSA 772 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~----~~~ 772 (842)
||+|++... .++ +...++.+++++|||||.+++. +...... .-|.++++ ++.
T Consensus 203 vDvV~~Dva---~pd-q~~il~~na~r~LKpGG~~vI~-ika~~id-------------------~g~~pe~~f~~ev~~ 258 (293)
T PTZ00146 203 VDVIFADVA---QPD-QARIVALNAQYFLKNGGHFIIS-IKANCID-------------------STAKPEVVFASEVQK 258 (293)
T ss_pred CCEEEEeCC---Ccc-hHHHHHHHHHHhccCCCEEEEE-Eeccccc-------------------cCCCHHHHHHHHHHH
Confidence 999999763 122 3556777999999999999993 2221100 11223332 355
Q ss_pred HhhcCCcEEEEEEecCc
Q 035870 773 MSVASRLCVEQVENIGI 789 (842)
Q Consensus 773 ~~~~~gf~v~~~~~~~~ 789 (842)
+.+ +||++++..++.+
T Consensus 259 L~~-~GF~~~e~v~L~P 274 (293)
T PTZ00146 259 LKK-EGLKPKEQLTLEP 274 (293)
T ss_pred HHH-cCCceEEEEecCC
Confidence 665 8999888887754
No 145
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.31 E-value=2.8e-11 Score=128.23 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=89.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-ccCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-AKAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~ 695 (842)
+.+.+.+ .++.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++......-+|.++++|+.+. +...
T Consensus 55 ~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 55 DEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred HHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 4444444 467899999999999999999883 5899999999999999999987643222577899999773 3112
Q ss_pred Cc-----cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KY-----DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~f-----D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+ .++++..++.+++.+....+|++++++|+|||.+++..-
T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 22 344444678888888889999999999999999998543
No 146
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.31 E-value=1.7e-11 Score=115.43 Aligned_cols=122 Identities=26% Similarity=0.383 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHHHHHcCCCC--CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 609 DLKAAQMRKVSLLIEKARVSK--GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 609 ~l~~aq~~~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
.+...|.+..++.++.+.++. ..-|||||||+|..+..+... |...+|+|+|+.|++.|.++--+ -.++.+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~ 100 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILC 100 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeee
Confidence 345567777788888888776 667999999999999888776 88999999999999999974322 257888
Q ss_pred ccc-CCc-cCCCccEEEEcchhhh---------cChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 687 DYR-QLA-KANKYDRIISCEMIEA---------VGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 687 d~~-~~~-~~~~fD~i~s~~~~~~---------~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|+- -+| ..+.||.+||+..+.+ ++...+..+|..++.+|++|++.+++...
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 864 455 6799999999877654 35555778999999999999999998654
No 147
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=8.3e-11 Score=116.60 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=95.8
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH------H-----cCCCCCeEEEEccccCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVK------E-----AGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~------~-----~~l~~~v~~~~~d~~~~ 691 (842)
..+...++.+||+.|||.|..+.+||++ |.+|+|+|+|+..++.+.+... . .--..+++++++|+.++
T Consensus 37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 37 SKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 4455567789999999999999999998 9999999999999999866320 0 00013799999999998
Q ss_pred cc----CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 692 AK----ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 692 ~~----~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++ .++||.|+-...+.+++.+...+|++.+.++|+|||.+++..+.
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 62 36899999999999999999999999999999999999987664
No 148
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.30 E-value=9.3e-12 Score=118.80 Aligned_cols=129 Identities=13% Similarity=0.067 Sum_probs=93.7
Q ss_pred EEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 656 TGITLSEEQLKYAEMKVKEAG--LQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 656 ~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
+|+|+|++|++.|+++.+..+ ...+++++++|+.+++ ++++||+|++..+++++.+ +..++++++|+|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence 589999999999988765322 2347999999999998 6779999999999999976 8999999999999999999
Q ss_pred EEeecCCCcccccccCccchh--------------hhccc---CCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 733 LQFISIPDERYNEYRLSSDFI--------------KEYIF---PGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~--------------~~~i~---p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.++..++..+..... ..+. ..|-+ .-...|+.+++.+.+.+ +||+......+.
T Consensus 79 i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~-aGF~~~~~~~~~ 149 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQ-GWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALE-AGFSSACHYEIS 149 (160)
T ss_pred EEECCCCChHHHHHHH-HHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHH-cCCCcceEEECc
Confidence 9998876543221100 0000 01100 00135688888887776 899866665543
No 149
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.7e-11 Score=117.66 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=98.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
..++..+++.||++|||.|.|+|.++.++|.. +..+|+.+|+.++.++.|++|++..++.++|++..+|+.+...+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 46888999999999999999999999999975 4479999999999999999999999999889999999998875559
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
||+|+. -+++ +-.++.+++++|||||.+++-.
T Consensus 164 vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 164 VDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEc
Confidence 999997 3455 7899999999999999999844
No 150
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.29 E-value=2e-11 Score=121.60 Aligned_cols=151 Identities=21% Similarity=0.310 Sum_probs=110.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCCeEEEEcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKE-A------G----LQDLIRLYLCD 687 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~-~------~----l~~~v~~~~~d 687 (842)
..+++.+..+++.+||..|||.|..+..||++ |.+|+|+|+|+.+++.+.+.... . + -.++|++.++|
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD 105 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD 105 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc
Confidence 34455577788899999999999999999998 89999999999999998543221 0 0 02368999999
Q ss_pred ccCCcc--CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCC
Q 035870 688 YRQLAK--ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPS 765 (842)
Q Consensus 688 ~~~~~~--~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~ 765 (842)
+.++++ .++||+|+-...++.++.+..++|.+.+.++|||||.+++.++..+..... ...| --+
T Consensus 106 fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~----GPPf----------~v~ 171 (218)
T PF05724_consen 106 FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME----GPPF----------SVT 171 (218)
T ss_dssp TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS----SSS--------------
T ss_pred cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC----CcCC----------CCC
Confidence 999873 258999999999999999999999999999999999966655543322110 1111 124
Q ss_pred HHHHHHHHhhcCCcEEEEEEe
Q 035870 766 LSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~ 786 (842)
.+++.+.+. .+|+++.++.
T Consensus 172 ~~ev~~l~~--~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG--PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT--TTEEEEEEEE
T ss_pred HHHHHHHhc--CCcEEEEEec
Confidence 567766655 5899888776
No 151
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.29 E-value=4.4e-11 Score=125.79 Aligned_cols=107 Identities=17% Similarity=0.283 Sum_probs=87.6
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch--
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM-- 705 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~-- 705 (842)
+..+|||+|||+|.+++.+++. ++.+|+++|+|+++++.|+++++.+++.++++++++|+.+..+..+||+|+|+..
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCC
Confidence 3369999999999999999987 5689999999999999999999999987679999999866433348999999732
Q ss_pred -----------hhhcCh----------hhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 -----------IEAVGH----------EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 -----------~~~~~~----------~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.|-+. +.+..+++++.++|+|||.+++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 122211 246788999999999999998854
No 152
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.27 E-value=5.5e-11 Score=112.56 Aligned_cols=68 Identities=37% Similarity=0.606 Sum_probs=52.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCC-CchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV-TYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~-~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||+|||+|||+|+++|.+|+|+|++..+||-+. .|.+.|+.. -.....++++++|++.+..
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~ye~~ 99 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRYEEE 99 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCcceec
Confidence 4899999999999999999999999999999999999543 344444321 2334557788888775433
No 153
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.26 E-value=2.9e-11 Score=126.67 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=78.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT----GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~----~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s 702 (842)
.+..+|||||||+|.++..+++.. +++++|+|+|+++++.|+++. .++++.++|..+++ ++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 456789999999999999998762 247999999999999998763 26899999999988 6789999999
Q ss_pred cchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 703 CEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+.. +..+++++|+|||||++++...
T Consensus 158 ~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA---------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC---------CCCHHHHHhhccCCCEEEEEeC
Confidence 754 1235789999999999998653
No 154
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=5.3e-11 Score=125.34 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
.....+++.++++++++|||||||+|.++..+++..+ .+|+++|+|+++++.|+++++..++. ++.++++|..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~ 145 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc
Confidence 3445777888889999999999999999999998743 47999999999999999999998874 7999999987655
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..++||+|++...+++++ ..+.+.|+|||++++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 446899999986665543 23567899999988854
No 155
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.25 E-value=9.5e-11 Score=131.15 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++|+.+++|++|..+++++.+.+.+|+++.||.||.|....
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 3445566677777999999999999988877765445567789999999998653
No 156
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.24 E-value=5.5e-11 Score=118.58 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=84.1
Q ss_pred HHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 617 KVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 617 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
++..+.++.. ++++.+|||||||+|.++..+++.. +++|+|+|+++ + ..++ +++++++|+.+.+
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~ 105 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELV 105 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChHH
Confidence 4455666666 5789999999999999999999883 46999999998 1 1233 6899999998842
Q ss_pred --------cCCCccEEEEcchhhhcChhh---------HHHHHHHHHhccccCcEEEEEeec
Q 035870 693 --------KANKYDRIISCEMIEAVGHEF---------MEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 --------~~~~fD~i~s~~~~~~~~~~~---------~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.+++||+|+|+.+.++.+... ...+++++.++|||||.+++..+.
T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 106 LKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 357899999987665544321 256899999999999999996543
No 157
>PHA03411 putative methyltransferase; Provisional
Probab=99.22 E-value=2.6e-10 Score=114.88 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
+++.+|||+|||+|.++..++++ .+.+|+++|+|+.+++.++++. .+++++++|+.+...+++||+|+++..+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 45679999999999999988876 3579999999999999998863 2689999999987755789999999998
Q ss_pred hhcChhh------------------HHHHHHHHHhccccCcEEEEE
Q 035870 707 EAVGHEF------------------MEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ~~~~~~~------------------~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.|.+.+. ...+++....+|+|+|.+.+.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 8864431 245677788899999977664
No 158
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.2e-10 Score=127.55 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=95.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
..+...+.+.+|++|||+|||+|..+.++++.. +.+|+++|+|+.+++.++++++..|+. ++++++|..+++ ..
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhccc
Confidence 345567788899999999999999999999883 369999999999999999999998874 789999998764 24
Q ss_pred CCccEEEEcchhh------hc-------Ch-------hhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 695 NKYDRIISCEMIE------AV-------GH-------EFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 695 ~~fD~i~s~~~~~------~~-------~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++||.|++..... +- .. +....+++.+.++|||||++++.+++..
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 6899999654221 11 11 1135789999999999999999887644
No 159
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.22 E-value=1.6e-10 Score=120.25 Aligned_cols=116 Identities=23% Similarity=0.385 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
.++.+++.+. ..+.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.|++++...++. +++++++|+.+..+++
T Consensus 76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCC
Confidence 3344555543 34569999999999999999987 5679999999999999999999998886 7999999987644567
Q ss_pred CccEEEEcchhhh------cCh------------------hhHHHHHHHHHhccccCcEEEEE
Q 035870 696 KYDRIISCEMIEA------VGH------------------EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 696 ~fD~i~s~~~~~~------~~~------------------~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+||+|+++..+.. +.. ..+..+++++.++|+|||.+++.
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999999754321 111 11357889999999999999984
No 160
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.22 E-value=1.5e-10 Score=123.92 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=84.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
+++.+|||+|||+|.+++.+++. ++++|+++|+|+++++.|+++++..+. +++++++|+.+.. ..++||+|+|+.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 35679999999999999999876 678999999999999999999988774 7999999986543 346899999987
Q ss_pred hhhhc-----------------------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 705 MIEAV-----------------------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 705 ~~~~~-----------------------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..-.- +-+.+..+++++.+.|+|||.+++.
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 53110 1123567888889999999998873
No 161
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.20 E-value=2.3e-10 Score=120.70 Aligned_cols=114 Identities=23% Similarity=0.374 Sum_probs=89.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
.++..+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++. .....+++++++|+.+....++||
T Consensus 99 ~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD 177 (275)
T PRK09328 99 WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFD 177 (275)
T ss_pred HHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCcee
Confidence 4444455567889999999999999999988 46899999999999999999987 334458999999986543447899
Q ss_pred EEEEcchhhh------c------------------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 699 RIISCEMIEA------V------------------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 699 ~i~s~~~~~~------~------------------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+|+++....- + +-+.+..+++++.++|||||++++.
T Consensus 178 ~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 178 LIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999754211 1 1123577889999999999999983
No 162
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.20 E-value=1.3e-10 Score=131.06 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=86.5
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
++.+|||+|||+|.+++.+++. ++.+|+++|+|+.+++.|++++..+++.++++++++|+.+..+.++||+|+|+...-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 4568999999999999999877 678999999999999999999999998878999999976533346899999975321
Q ss_pred --------------hc----------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 708 --------------AV----------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 708 --------------~~----------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
|- +-+.+..+++++.++|+|||.+++.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 10 1123566788999999999999884
No 163
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2.7e-10 Score=126.28 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=97.2
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
.+...+.+++|.+|||+|||+|+.+.++++.. +.+|+++|+|+.+++.+++++++.|+. +++++++|..+++ ..+
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhc
Confidence 34456778899999999999999999999873 579999999999999999999999986 6999999998775 357
Q ss_pred CccEEEEcc------hhhhcC-------hh-------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 696 KYDRIISCE------MIEAVG-------HE-------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 696 ~fD~i~s~~------~~~~~~-------~~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+||.|++.. ++..-+ .+ ...+++.++.++|||||+++..+++...
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 899999742 222111 11 2367799999999999999999888654
No 164
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.19 E-value=2.5e-10 Score=126.93 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...+++.|.+.+++.|++++++++|++|+.+++++.|.+.+| ++.||.||+|++.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 468999999999999999999999999998888888888877 799999999988763
No 165
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.19 E-value=1.2e-09 Score=121.41 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC-CCcEEeCCEEEEccC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG-DGSREFYNSCVMALH 268 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~A~p 268 (842)
.+-+.|++..++.|++++.++.|+.+..+++++.+.+. ++.++.|+.||.|..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG 149 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCC
Confidence 45556788888889999999999999999988654443 336899999999975
No 166
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.19 E-value=3.1e-10 Score=122.57 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcE-EeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSR-EFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VV~A~p~~~ 271 (842)
+..++.+|++.++++|++|++|++|+.|++.+++ +.+.+.+|++ ++|+.||.+++.+.
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH
Confidence 5689999999999999999999999999999985 5677888876 99999999987553
No 167
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=6.8e-11 Score=113.63 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=112.7
Q ss_pred eEEEeccCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEEc
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIISC 703 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s~ 703 (842)
+|||||||-|.....+.+. ++ ..|.+.|.|+.+++..+++..... .++...+.|+..-. ..+++|.|+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999998877 33 789999999999999998865443 46776777754322 56899999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchh-hhcccCCCC---CCCHHHHHHHHhhcCCc
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFI-KEYIFPGGC---LPSLSRITSAMSVASRL 779 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~p~~~---~~~~~~~~~~~~~~~gf 779 (842)
+++..++.+.+...+++++++|||||.+++.+...-+-....+....-+- +-|+.-+|. .-+.+++.+.+.+ +||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~-agf 230 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTK-AGF 230 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHh-ccc
Confidence 99999999999999999999999999999998876553322222111111 224444443 3356677666665 899
Q ss_pred EEEEEEe
Q 035870 780 CVEQVEN 786 (842)
Q Consensus 780 ~v~~~~~ 786 (842)
..+..+.
T Consensus 231 ~~~~~~~ 237 (264)
T KOG2361|consen 231 EEVQLEV 237 (264)
T ss_pred chhcccc
Confidence 8766543
No 168
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=1.8e-10 Score=128.96 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=96.7
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+..+.+.+|++|||+|||+|+.+.++++.. +.+|+++|+|+++++.+++++++.|+. +|+++++|..+++++++|
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~f 319 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQP 319 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCC
Confidence 34456677899999999999999999998762 469999999999999999999999986 799999999887655789
Q ss_pred cEEEEc------chhh-------hcChh-------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 698 DRIISC------EMIE-------AVGHE-------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 698 D~i~s~------~~~~-------~~~~~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
|+|++. +++. +...+ ....++.++.++|||||++++.+++...
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 999963 2221 11111 2346899999999999999999887653
No 169
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=1.5e-10 Score=112.05 Aligned_cols=110 Identities=18% Similarity=0.243 Sum_probs=87.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
+.+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+|+.+++.+++++.. .++++++++|+.+++ ++.+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCC
Confidence 56778888889999999999999999999998 78999999999999999998854 248999999999987 44579
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|.|+++..++ +..+.+..+++. ..+.++|.++++.
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhc--CCCcceEEEEEEH
Confidence 9999987654 333333333332 1245888888864
No 170
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=3.6e-10 Score=126.16 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
..+...+.+++|++|||+|||.|+.+.++++.. ..+|+++|+|+++++.++++++..|+. +|+++++|..+++
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccc
Confidence 345566788899999999999999999999873 369999999999999999999999986 6999999998765
Q ss_pred -cCCCccEEEEc------chhhhcChh--------------hHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 693 -KANKYDRIISC------EMIEAVGHE--------------FMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 693 -~~~~fD~i~s~------~~~~~~~~~--------------~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
..++||.|++. +++.+-++. ...++++++.++|||||+++..+++..
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 14689999974 344433321 146889999999999999999877654
No 171
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.17 E-value=1.4e-09 Score=116.17 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC-CcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD-GSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++++++++|+++..+++++.+...+ +.+++||.||.|+...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 556667777777799999999999999988887666543 4579999999998764
No 172
>PRK04457 spermidine synthase; Provisional
Probab=99.16 E-value=1.8e-10 Score=118.89 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=87.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
+++.+|||||||.|.++..+++. ++.+|+++|+++++++.|++++...+..++++++++|..+.. ..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999887 678999999999999999999865554468999999986653 236899999853
Q ss_pred hh-hhcCh-hhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 705 MI-EAVGH-EFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 705 ~~-~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.- ...+. -...+++++++++|+|||++++..+..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11 11111 123799999999999999999975543
No 173
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.16 E-value=2.4e-10 Score=115.98 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=89.1
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-------KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~f 697 (842)
..++.+|||||||+|..++.++.. .+.+|+++|+++++++.|+++++.+|+.++++++.+|+.+.. +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 346779999999999988888876 357999999999999999999999999989999999987642 14689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|+|+...- ...+..++..+.++|||||.+++....
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99997532 234778999999999999999986543
No 174
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.16 E-value=3.6e-10 Score=117.29 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=94.4
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccE
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDR 699 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~ 699 (842)
..+.+++|++|||+|||+|+.+..+++.. ..+|+++|+|+.+++.++++++..++. +|++++.|..+++ ..++||+
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCE
Confidence 45677899999999999999999998873 358999999999999999999999985 6999999988766 4467999
Q ss_pred EEEcc------hhhhcCh-------h-------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 700 IISCE------MIEAVGH-------E-------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 700 i~s~~------~~~~~~~-------~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
|++.. ++.+-++ + ....+++++.++|||||+++.++++...
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99742 2211111 1 2356899999999999999998877544
No 175
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.15 E-value=2.5e-10 Score=127.24 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=97.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
..+...+.+.+|.+|||+|||+|+.+.++++.. +.+|+++|+|+++++.++++++..|+..++.+..+|..+.+ ..
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 456677888899999999999999999999873 47999999999999999999999998644455777766543 35
Q ss_pred CCccEEEEc------chhhhcChh--------------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 695 NKYDRIISC------EMIEAVGHE--------------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 695 ~~fD~i~s~------~~~~~~~~~--------------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
++||.|++. +++.+.++- ....+++++.++|||||++++++++...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 789999963 345444331 1467899999999999999999888654
No 176
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.15 E-value=4.8e-10 Score=107.72 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=117.7
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---c------CCCccE
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---K------ANKYDR 699 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~------~~~fD~ 699 (842)
+.+|||||||||..+.++|++ +..+..-.|+++......+..+.+.++++-..-+..|+.+.+ . .++||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 335999999999999999999 788999999999998888888888887633345566765543 1 358999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc--cCccchhhhcccCCCCCCCHHHHHHHHhhcC
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY--RLSSDFIKEYIFPGGCLPSLSRITSAMSVAS 777 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~ 777 (842)
|+|+.|+|-++-+..+.+|+.+.++|+|||.+++-.....+..+... ..-..+++. --|..-+..++++.+...+ .
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~-rdp~~GiRD~e~v~~lA~~-~ 183 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS-RDPEWGIRDIEDVEALAAA-H 183 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc-CCCCcCccCHHHHHHHHHH-C
Confidence 99999999999888999999999999999999996554444333211 111222222 2365567788887766555 8
Q ss_pred CcEEEEEEecC
Q 035870 778 RLCVEQVENIG 788 (842)
Q Consensus 778 gf~v~~~~~~~ 788 (842)
||++++..++.
T Consensus 184 GL~l~~~~~MP 194 (204)
T PF06080_consen 184 GLELEEDIDMP 194 (204)
T ss_pred CCccCcccccC
Confidence 99988777654
No 177
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=6.9e-10 Score=111.84 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC---CCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcC
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA---DKGCTIVCGDGSREFYNSCVMALHAPDALKILGN 278 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~---~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~ 278 (842)
..-+..+...+++.|+.++.+..|+.+... +..+.|.|.+|..+.|+.+|+|+.+|.. ++|++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcCc
Confidence 356667777777889999999999999854 3458999999988999999999999955 45554
No 178
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.14 E-value=6.7e-10 Score=111.79 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
..+..|+..+++.||++|||.|.|+|.++..+++. +..+|+..|+.++.++.|+++++..|+.++|++.+.|+.+..
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34567889999999999999999999999999987 567999999999999999999999999999999999985422
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhcc-ccCcEEEEE
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLL-AEDGLLVLQ 734 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~L-kpgG~~~~~ 734 (842)
.+..+|.|+.- +++ +-.++..+.+.| ||||++++-
T Consensus 107 ~~~~~~~~DavfLD-----lp~--Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 107 DEELESDFDAVFLD-----LPD--PWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp STT-TTSEEEEEEE-----SSS--GGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccccCcccEEEEe-----CCC--HHHHHHHHHHHHhcCCceEEEE
Confidence 23689999973 444 567788899999 899999984
No 179
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6.3e-10 Score=115.60 Aligned_cols=102 Identities=24% Similarity=0.423 Sum_probs=82.9
Q ss_pred eEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh---
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE--- 707 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~--- 707 (842)
+|||||||+|.+++.++.+ +.++|+|+|+|+++++.|++++..+++ .++.++++|..+-.. ++||+||||...-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999999998 556999999999999999999999998 577777778544332 5999999985320
Q ss_pred --hc------------------ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 708 --AV------------------GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 708 --~~------------------~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+. |-+-...++.++.+.|+|||.+++..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 00 11346788899999999999998853
No 180
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.12 E-value=7.3e-10 Score=106.87 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=99.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-CCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-ANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~fD~i~s~~~~~ 707 (842)
...+.||+|+|.|..+..+....-.+|..+|.++..++.|++.+... .....++++.-..++.| .++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 35699999999999999886655679999999999999999876541 12235788888888874 47999999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEeecCCCc--ccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDE--RYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
|+.++++.++|+.++..|+|+|.+++-+-..... .++.-. ... .-+...+.+.+.+ +|++++..+
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~D--sSv----------TRs~~~~~~lF~~-AGl~~v~~~ 200 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEED--SSV----------TRSDEHFRELFKQ-AGLRLVKEE 200 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTT--TEE----------EEEHHHHHHHHHH-CT-EEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCcc--Cee----------ecCHHHHHHHHHH-cCCEEEEec
Confidence 9999999999999999999999999965443332 111111 111 1245566666665 999998765
Q ss_pred e
Q 035870 786 N 786 (842)
Q Consensus 786 ~ 786 (842)
.
T Consensus 201 ~ 201 (218)
T PF05891_consen 201 K 201 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 181
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=5.3e-10 Score=125.44 Aligned_cols=119 Identities=24% Similarity=0.284 Sum_probs=95.5
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
.+...+.++++.+|||+|||+|..+..+++.. +.+|+++|+|+++++.++++++..|+. +++++++|+.++. ..+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcc
Confidence 44556777899999999999999999999873 579999999999999999999999986 5999999998764 226
Q ss_pred CccEEEEcch------hhhcCh-------h-------hHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 696 KYDRIISCEM------IEAVGH-------E-------FMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 696 ~fD~i~s~~~------~~~~~~-------~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+||+|++... +.+-++ + ...++++++.++|||||+++..+++..
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 8999998643 111111 1 125689999999999999998776653
No 182
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.11 E-value=6.6e-10 Score=120.99 Aligned_cols=110 Identities=18% Similarity=0.124 Sum_probs=89.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----~~~~fD~i~ 701 (842)
.++.+|||+|||+|.+++.++.....+|+++|+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 368899999999999998877653449999999999999999999999986 48999999987753 246899999
Q ss_pred EcchhhhcCh-------hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 702 SCEMIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 702 s~~~~~~~~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++.....-.. ..+..+++.+.++|+|||.++..+++
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9866432221 23667777889999999999986654
No 183
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.11 E-value=9.5e-10 Score=112.93 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=81.1
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCE 704 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~ 704 (842)
++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.++ ++++++|+.+.. ..++||+|+++.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 3468999999999999999877 56799999999999999999998765 478999976532 136899999986
Q ss_pred hhh------hcCh------------------hhHHHHHHHHHhccccCcEEEEE
Q 035870 705 MIE------AVGH------------------EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 705 ~~~------~~~~------------------~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
... .+++ +.+..+++.+.++|||||++++.
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 432 1111 12457888899999999999984
No 184
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.10 E-value=9.9e-10 Score=113.18 Aligned_cols=114 Identities=20% Similarity=0.275 Sum_probs=96.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+.......+..+|+|||+|.|.++..++++ |+.+++..|+ |+.++.+++ .++|+++.+|+.+-.+ . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc-c-c
Confidence 45566677778889999999999999999988 8899999999 888888887 3599999999873223 3 9
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccC--cEEEEEeecCCCcc
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAED--GLLVLQFISIPDER 742 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg--G~~~~~~~~~~~~~ 742 (842)
|+|+...++|+.+++....+|+++++.|+|| |+++|.+...++..
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 9999999999999999999999999999999 99999988876654
No 185
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.10 E-value=5.7e-09 Score=112.59 Aligned_cols=234 Identities=17% Similarity=0.156 Sum_probs=128.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEee--CCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVTF--DGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
|++-|||+|+|+|+||.+|-+. |.+|+|||+.+.+||.+.+... .||.+-.|-... ..+..+++|++.+--.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~--~~~eclwdLls~IPSl 80 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMME--FHYECLWDLLSSIPSL 80 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcccc--chhHHHHHHHHhCCCC
Confidence 5788999999999999999987 5699999999999998877654 567665554332 3677788888876422
Q ss_pred ccccc----------------ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 035870 75 MEMSD----------------MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELES 138 (842)
Q Consensus 75 ~~~~~----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (842)
..+.. ....+...+|+.+...+ +-.++. +...++.++. ..
T Consensus 81 e~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~~~-----------~~~Ls~---k~r~eL~kL~----------l~ 136 (500)
T PF06100_consen 81 EDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDTDS-----------KFGLSE---KDRMELIKLL----------LT 136 (500)
T ss_pred CCCCCcHHHHHHHhccCCCCCcceeeeccCCccccccC-----------cCCCCH---HHHHHHHHHh----------cC
Confidence 22110 00000001111110000 000111 1112222221 11
Q ss_pred CCCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh--ccccccCCCCce-EEecCChh
Q 035870 139 NPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN--HHLLQLFGRPQW-LTVRWRSH 215 (842)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~gG~~ 215 (842)
......+.++.+|+....+...|...+-..+.-..|. |+..+.+|+.+ +.+.++-.-... ++.-.=+.
T Consensus 137 ~E~~L~~~~I~d~F~~~FF~SnFW~~W~T~FAFqpWh---------Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQye 207 (500)
T PF06100_consen 137 PEEDLGDKRIEDWFSESFFESNFWYMWSTMFAFQPWH---------SAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYE 207 (500)
T ss_pred CHHHhCcccHHHhcchhhhcCchhHhHHHhhccCcch---------hHHHHHHHHHHHHHhcCCCCCccccccCccccHH
Confidence 1112257788888887766555443222211112222 56666555543 111111111111 11123367
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC---c-E-EEE-eCCCc--EE---eCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK---G-C-TIV-CGDGS--RE---FYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~---~-v-~V~-~~~G~--~~---~ad~VV~A~p~ 269 (842)
+++..|.+.|+++|+++++|++|+.|+.+.+ + + .++ ..+|+ ++ .-|.|+++...
T Consensus 208 Sii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 208 SIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCc
Confidence 9999999999999999999999999987532 2 2 222 24554 22 46677777543
No 186
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.08 E-value=7.7e-10 Score=97.42 Aligned_cols=101 Identities=30% Similarity=0.483 Sum_probs=85.3
Q ss_pred eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcchhhhc
Q 035870 632 EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEMIEAV 709 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~~ 709 (842)
+|+|+|||.|.++..+++..+.+++++|+++++++.+++..... ...+++++..|+.+.. ..++||+|+++.++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 58999999999999998855789999999999999998644333 3347899999988876 45789999999999884
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+....+++.+.+.|||||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345899999999999999999885
No 187
>PRK00811 spermidine synthase; Provisional
Probab=99.08 E-value=7.3e-10 Score=115.98 Aligned_cols=108 Identities=27% Similarity=0.336 Sum_probs=85.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C--CCCeEEEEccccCCc--cCCCccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L--QDLIRLYLCDYRQLA--KANKYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l--~~~v~~~~~d~~~~~--~~~~fD~i 700 (842)
+++.+||+||||+|..+..+++++ ..+|+++|+++++++.|++.+...+ . .++++++.+|..+.. ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 456799999999999999999874 4689999999999999999886432 2 458999999987654 35799999
Q ss_pred EEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEe
Q 035870 701 ISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++...-...+.. .-.++++.+++.|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 996432222111 23788999999999999999864
No 188
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.07 E-value=3.1e-09 Score=104.64 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 035870 610 LKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687 (842)
Q Consensus 610 l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (842)
....+-+.+..+++.. ...+||||||++|..++.+|+. .+++|+.+|++++..+.|++.++..|+.++|+++.+|
T Consensus 29 i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd 105 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-
T ss_pred cCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 3444445555555544 4559999999999999999987 3689999999999999999999999999999999999
Q ss_pred ccCCc----c---CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 688 YRQLA----K---ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 688 ~~~~~----~---~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+.+.- . .++||.|+.-. ...++..++..+.++|+|||.+++......
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred cHhhHHHHHhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 86632 1 35899999854 234588999999999999999999765543
No 189
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.06 E-value=1.4e-09 Score=119.82 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...++..|++.+.++ |++|+.+++|++|+.. .|+|.+| ++.||+||+|+.++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 457888898888765 9999999999999753 6778877 578999999998874
No 190
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.06 E-value=1.9e-09 Score=127.09 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=88.2
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc--cCCCccEEEEcch
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA--KANKYDRIISCEM 705 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~--~~~~fD~i~s~~~ 705 (842)
++.+|||+|||+|.+++.+++....+|+++|+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999873347999999999999999999999986 58999999986643 2468999999754
Q ss_pred hhhc---------ChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 706 IEAV---------GHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 706 ~~~~---------~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
...- ....+..++..+.++|+|||.+++.+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2110 112467889999999999999988543
No 191
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.06 E-value=1.5e-09 Score=106.23 Aligned_cols=113 Identities=26% Similarity=0.299 Sum_probs=94.9
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ccccCCc---cCCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL-CDYRQLA---KANK 696 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~-~d~~~~~---~~~~ 696 (842)
..+...+..+|||||++.|.-++.+|.. + +.++|.+|+++++.+.|++++++.|+.++|+++. +|..+.- ..++
T Consensus 53 ~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~ 132 (219)
T COG4122 53 LLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGS 132 (219)
T ss_pred HHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCC
Confidence 3344457789999999999999999988 4 6799999999999999999999999999999999 5865544 2589
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
||+|+.- ....+++.+|..+-++|+|||.+++..+..+.
T Consensus 133 fDliFID-----adK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 133 FDLVFID-----ADKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred ccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 9999973 23346899999999999999999997766553
No 192
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.06 E-value=3.6e-09 Score=118.94 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhhh----cC--ceEEeCCCeeEEEeCCC-cEEEEeCCCcEEeCCEEEEccChHHH
Q 035870 214 SHSYVNKVRKQLES----WG--CQIRTSSEVCSVLPADK-GCTIVCGDGSREFYNSCVMALHAPDA 272 (842)
Q Consensus 214 ~~~l~~~L~~~l~~----~G--~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~A~p~~~~ 272 (842)
...++..|++.+++ +| ++|+++++|+.|+.+++ .+.|+|.+| ++.||.||+|+.++..
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 45789999999988 77 77999999999998844 578999888 7999999999988754
No 193
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.03 E-value=1.6e-09 Score=106.77 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=77.2
Q ss_pred HHHHHc-CCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 620 LLIEKA-RVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 620 ~l~~~l-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
.+.++. .++++.+|||||||+|.++..+++.. ..+|+++|+|+.+ .. .+++++++|+.+..
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHH
Confidence 344433 45789999999999999999998873 4589999999864 12 26888999987632
Q ss_pred -----cCCCccEEEEcchh--------hhcC-hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 -----KANKYDRIISCEMI--------EAVG-HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 -----~~~~fD~i~s~~~~--------~~~~-~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.++||+|++.... +|.. .+....+++++.++|+|||++++..
T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 34689999996532 2211 1224788999999999999999964
No 194
>PLN02476 O-methyltransferase
Probab=99.03 E-value=2.7e-09 Score=109.04 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=91.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-------KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~f 697 (842)
..+..+||||||++|..++.+|+. .+.+|+++|.+++.++.|++++++.|+.++|+++.+|+.+.. ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 345679999999999999999986 356899999999999999999999999999999999976542 13689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
|.|+.-.- ..++..+++.+.++|+|||.+++..+...
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 99997532 34689999999999999999999765443
No 195
>PRK06847 hypothetical protein; Provisional
Probab=99.03 E-value=4.8e-09 Score=116.18 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++.|++|+++++|++|+.+++++.|++.+|+++.||.||.|....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 5666777777777999999999999999888899999999899999999998754
No 196
>PHA03412 putative methyltransferase; Provisional
Probab=99.03 E-value=1.3e-09 Score=107.33 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=76.6
Q ss_pred CCCeEEEeccCchHHHHHHHHh----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR----TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
.+.+|||+|||+|.++..++++ ...+|+++|+++.+++.|+++.. +++++++|+.+.+.+++||+||+|.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 3679999999999999999875 24689999999999999997752 5889999998766557999999998
Q ss_pred hhhhcC----------hhhHHHHHHHHHhccccCcE
Q 035870 705 MIEAVG----------HEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 705 ~~~~~~----------~~~~~~~~~~~~~~LkpgG~ 730 (842)
.+.-.. ......+++.+.++++||+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 765322 12256688888887777665
No 197
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=4.8e-09 Score=102.57 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=91.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-----Cc-cCCCccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-----LA-KANKYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-----~~-~~~~fD~i 700 (842)
..+..+||+|||+|.++..++.. +.++|++||.|+.++..|.+|++.+++.+++.+++-+.+. .+ ..+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 45568999999999999999887 7899999999999999999999999999999988665432 22 45899999
Q ss_pred EEcchhh------hc------------------ChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 701 ISCEMIE------AV------------------GHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 701 ~s~~~~~------~~------------------~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+||...- .+ +.+.+..++.-+.|+|+|||.+.+.....+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 9986420 00 2234667788899999999999997765543
No 198
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=105.31 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=76.1
Q ss_pred CCCC-eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 628 SKGQ-EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 628 ~~~~-~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
.++. .++|+|||+|..++.+|+. -.+|+|+|+|++|++.|++.....-.....++...+..++. .+++.|+|++..+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3444 7899999999888888877 56999999999999998875322111111233333344444 5789999999999
Q ss_pred hhhcChhhHHHHHHHHHhccccCc-EEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDG-LLVL 733 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG-~~~~ 733 (842)
+|++. ++.++++++|+||+.| .+.+
T Consensus 110 ~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 99996 5899999999999866 6555
No 199
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.02 E-value=5.7e-09 Score=115.69 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=50.6
Q ss_pred CChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 212 WRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
+....+.+.|.+.+++.|++|+++++|++|..+++.+.|++ +++++.||.||+|++...
T Consensus 102 ~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 102 DSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 34578999999999999999999999999988877788887 455899999999998653
No 200
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.02 E-value=5.6e-09 Score=107.28 Aligned_cols=39 Identities=44% Similarity=0.707 Sum_probs=36.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||++||+||+.|+++|.+|+|+|++..+||.+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 389999999999999999999999999999999998743
No 201
>PRK10015 oxidoreductase; Provisional
Probab=99.02 E-value=8.9e-09 Score=115.15 Aligned_cols=55 Identities=16% Similarity=0.011 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++++.+++|+.|..+++++.+...++.++.||.||.|....
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 3444566777777999999999999988777775433455579999999997653
No 202
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.01 E-value=3e-08 Score=108.24 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=141.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee---------------------CCeeeecceEeecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF---------------------DGVDLDLGFMVFNRVT 60 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~---------------------~g~~~d~G~~~~~~~~ 60 (842)
||||+|-|+.-.-.|..|++.|.+|+.+|+++.-||..+|... ..+.+|+-+..+. .
T Consensus 6 DviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~--a 83 (438)
T PF00996_consen 6 DVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY--A 83 (438)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE--T
T ss_pred eEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh--c
Confidence 8999999999999999999999999999999999999999763 1267777777773 4
Q ss_pred chhHHHHHHHcCCCccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhh-c
Q 035870 61 YPNMMEFFESLGVDMEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEEL-E 137 (842)
Q Consensus 61 ~~~~~~l~~~lGl~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (842)
...+.+++-+-++...... ..-.+.+.+++....+. .-...+. ...+... ..+.+.+|.....++.... .
T Consensus 84 ~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~--sr~dvf~--s~~lsl~---eKR~lmkFl~~v~~~~~~~~~ 156 (438)
T PF00996_consen 84 RGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPC--SREDVFK--SKLLSLF---EKRRLMKFLKFVANYEEDDPS 156 (438)
T ss_dssp TSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--S--SHHHHHC---TTS-HH---HHHHHHHHHHHHHHGCTTBGG
T ss_pred cCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCC--CHHHhhc--CCCccHH---HHHHHHHHHHHHhhcccCCcc
Confidence 5577788777777655432 12223334444433322 1111111 1112221 2233334433333332111 1
Q ss_pred CCCCC-CccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc-cccccCCCCceEEecCChh
Q 035870 138 SNPDI-DRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH-HLLQLFGRPQWLTVRWRSH 215 (842)
Q Consensus 138 ~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gG~~ 215 (842)
..... ....++.+++++.++++...+.+...+ +++..+ ..+ ..|+...+.-+..+ ...+.++...+.++..|.+
T Consensus 157 ~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~~-~~~-~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~G 232 (438)
T PF00996_consen 157 THKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLDD-SYL-TEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLG 232 (438)
T ss_dssp GSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSSS-GGG-GSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TT
T ss_pred hhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccCc-ccc-cccHHHHHHHHHHHHHHHhccCCCCEEEEccCCc
Confidence 11111 135789999999988877655443322 222221 111 22333322222211 1123455668899999999
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-E-EEEeCCCcEEeCCEEEEc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-C-TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VV~A 266 (842)
.|++++++...=.|+...+|++|.+|..+.++ + .|.+ +|+++.|++||..
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 99999999887789999999999999985544 3 4554 8889999999964
No 203
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.00 E-value=3e-09 Score=119.20 Aligned_cols=112 Identities=15% Similarity=0.305 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
..++.+++.+.+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+++++.|+++++.+++. +++++++|+.+..
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhh
Confidence 45567777777888999999999999999999987 689999999999999999999998885 7999999986532
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.+++||+|+++..-.- ....++.+.+ ++|++.++++.
T Consensus 362 ~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEe
Confidence 2467999999765332 2345566655 68999888854
No 204
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.00 E-value=3.7e-09 Score=103.68 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=84.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcch
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEM 705 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~ 705 (842)
.++.+|||+|||+|.+++.++.+...+|+++|++++.++.++++++.+++. +++++++|+.+.. ..++||+|+++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 467899999999999998765554579999999999999999999999875 7999999987643 2357999999988
Q ss_pred hhhcChhhHHHHHHHHHh--ccccCcEEEEEeec
Q 035870 706 IEAVGHEFMEEFFGCCES--LLAEDGLLVLQFIS 737 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~--~LkpgG~~~~~~~~ 737 (842)
+.. + .....++.+.. +|+|++.++++...
T Consensus 131 y~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRK-G--LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC-C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 543 2 24556666655 48999999986543
No 205
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.00 E-value=6.5e-09 Score=115.74 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++.|++++++++|++|+.+++++.|++++|+++.||.||.|....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAA 168 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 6677788888888999999999999999988999999888899999999997654
No 206
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.00 E-value=1.9e-09 Score=103.42 Aligned_cols=39 Identities=46% Similarity=0.675 Sum_probs=32.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||+|||||+|||+||++|+++|++|+|+|++..+||.+.
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred CEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 899999999999999999999999999999999998553
No 207
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.99 E-value=7.3e-09 Score=106.83 Aligned_cols=38 Identities=50% Similarity=0.822 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||+|||+||++|++.|++|+|+|++..+||.+
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 89999999999999999999999999999999988843
No 208
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.99 E-value=2.7e-09 Score=117.62 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCC----CCCeEEEeccCchHHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 616 RKVSLLIEKARVS----KGQEVLEIGCGWGTLAIEIVKRT-----GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 616 ~~~~~l~~~l~~~----~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
.....+.+..... .+..|||||||+|.++..+++.. ..+|++|+.|+.+....+++++.+++.++|+++.+
T Consensus 169 AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~ 248 (448)
T PF05185_consen 169 AIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG 248 (448)
T ss_dssp HHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES
T ss_pred HHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3334444554433 25789999999999987776652 36999999999999888888899999999999999
Q ss_pred cccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 687 DYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 687 d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
|++++....+.|+|||-.|-....+|-.++.+....|.|||||.++
T Consensus 249 d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 249 DMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999995579999999776555555678889999999999999876
No 209
>PRK07588 hypothetical protein; Provisional
Probab=98.99 E-value=5.8e-09 Score=116.12 Aligned_cols=53 Identities=6% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.|.+.|.+.++. |++|+++++|++|+.++++|.|++++|+++++|.||.|-..
T Consensus 104 ~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~ 156 (391)
T PRK07588 104 DLAAAIYTAIDG-QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGL 156 (391)
T ss_pred HHHHHHHHhhhc-CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCC
Confidence 455555555543 68999999999999999999999999998999999999653
No 210
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.99 E-value=5.2e-09 Score=116.44 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.| ++|+.+++|++|..+++++.|++++|+++.+|.||.|....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 67777888887777 99999999999999888999999999899999999986543
No 211
>PLN02366 spermidine synthase
Probab=98.99 E-value=1.5e-09 Score=113.92 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=85.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEccccCCc---cCCCccE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEA--GL-QDLIRLYLCDYRQLA---KANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~---~~~~fD~ 699 (842)
.++..+||+||||.|..+..+++.++ .+|+.+|+++++++.|++.+... ++ .++++++.+|..+.. ++++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35678999999999999999998854 58999999999999999987653 23 348999999976543 2468999
Q ss_pred EEEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEee
Q 035870 700 IISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 700 i~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|++...-.+.+.. .-.++++.++++|+|||.++.+..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9986433222211 246889999999999999988653
No 212
>PRK03612 spermidine synthase; Provisional
Probab=98.98 E-value=2.5e-09 Score=121.53 Aligned_cols=109 Identities=25% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHH--HHHc---CC-CCCeEEEEccccCCc--cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMK--VKEA---GL-QDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~--~~~~---~l-~~~v~~~~~d~~~~~--~~~~f 697 (842)
.+++++|||||||+|..+..++++++ .+|+++|+++++++.++++ +... .+ .++++++.+|.++.. .+++|
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 35667999999999999999998754 6999999999999999983 3221 22 248999999988743 34799
Q ss_pred cEEEEcchhhhcCh---hhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGH---EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~---~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+|++.......+. -.-.++++.+++.|||||.++++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999854332211 123578999999999999999975
No 213
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.98 E-value=7.9e-09 Score=115.35 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.+ ++++++++|+++..+++++.|++.+|+++.||.||.|...+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcC
Confidence 46667777776655 89999999999998888899999999889999999997644
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.97 E-value=2e-09 Score=107.39 Aligned_cols=182 Identities=22% Similarity=0.164 Sum_probs=127.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
-.+..|||+|||+|.++..+|+....+|.+++.|+ |.++|++.++.+.+.++|+++.+.++++...++.|+|||-.|-.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 46789999999999999999998557899999865 99999999999999999999999999988558999999988877
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEE--eecC----CCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQ--FISI----PDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~--~~~~----~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v 781 (842)
.+-+|.+-+..-..++.|||.|.++=. ++.. .+..|.+.-....|+.+--|.|-.+.++..- +..+-..--|
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~--a~~eYFrQPv 332 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGS--AHQEYFRQPV 332 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhh--hhhhhhcccc
Confidence 665554444444667999999998742 1111 1112222222345555555666555433211 1111112246
Q ss_pred EEEEecCccHHHHHHHHHHHHHHhHHHHHhc
Q 035870 782 EQVENIGIHYYQTLRCWRKNFMEKQSKILAL 812 (842)
Q Consensus 782 ~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~ 812 (842)
++..+.+.-.++++.+-.+.++...+++...
T Consensus 333 VDtFD~RilmA~sv~h~~dF~~~kEedlh~i 363 (517)
T KOG1500|consen 333 VDTFDIRILMAKSVFHVIDFLNMKEEDLHEI 363 (517)
T ss_pred ccccccceeeccchHhhhhhhhcccchheee
Confidence 7777777777888888777777666665544
No 215
>PRK07236 hypothetical protein; Provisional
Probab=98.97 E-value=6.4e-09 Score=115.44 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEc--cChHHHHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMA--LHAPDALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A--~p~~~~~~ll~ 277 (842)
.+.+.|.+.+. +++|+++++|++|+.++++|.|++++|+++.||.||.| +...+...+++
T Consensus 101 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~ 162 (386)
T PRK07236 101 VLYRALRAAFP--AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLP 162 (386)
T ss_pred HHHHHHHHhCC--CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCC
Confidence 34444555553 46899999999999998899999999999999999999 44444444433
No 216
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.97 E-value=3e-09 Score=104.42 Aligned_cols=103 Identities=28% Similarity=0.383 Sum_probs=83.8
Q ss_pred eEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEEEcchh
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRIISCEMI 706 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~s~~~~ 706 (842)
.+||||||.|.+...+|+. ++..++|+|++...+..+.+++...+++ |+.++++|+..+. +++++|.|..++.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 8999999999999999988 8999999999999999999999999986 9999999988733 56899999998765
Q ss_pred hhcChhh------HHHHHHHHHhccccCcEEEEEe
Q 035870 707 EAVGHEF------MEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ~~~~~~~------~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
-+....+ -+.+++.++++|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4443221 3789999999999999998853
No 217
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.96 E-value=6.1e-09 Score=109.15 Aligned_cols=83 Identities=24% Similarity=0.355 Sum_probs=67.9
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEc-cccCCc-----cCCCccEE
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA-GLQDLIRLYLC-DYRQLA-----KANKYDRI 700 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~-d~~~~~-----~~~~fD~i 700 (842)
++.++||||||+|.+...++.+ ++++++|+|+++.+++.|+++++.+ ++.++|++++. |..++. +.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 5689999999999888777766 7899999999999999999999999 79889988653 332221 35689999
Q ss_pred EEcchhhhcCh
Q 035870 701 ISCEMIEAVGH 711 (842)
Q Consensus 701 ~s~~~~~~~~~ 711 (842)
+||..++.-..
T Consensus 194 vcNPPf~~s~~ 204 (321)
T PRK11727 194 LCNPPFHASAA 204 (321)
T ss_pred EeCCCCcCcch
Confidence 99998775543
No 218
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.96 E-value=1e-08 Score=113.82 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH-HHHhhc
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
..+.+.|.+.+.+ .|++++++++|++|..+++++.|++.+|+++.||.||.|.+.+. +.+.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 3677888888877 48999999999999998889999998898899999999987543 344443
No 219
>PRK01581 speE spermidine synthase; Validated
Probab=98.96 E-value=5.3e-09 Score=109.62 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=82.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHH--H---HHcCC-CCCeEEEEccccCCc--cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMK--V---KEAGL-QDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~--~---~~~~l-~~~v~~~~~d~~~~~--~~~~f 697 (842)
.....+||+||||.|..+..+.+.+ ..+|+++|+++++++.|++. + ....+ .++++++.+|..+.. ..++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3455699999999999999888873 47999999999999999962 1 11122 358999999988753 45789
Q ss_pred cEEEEcchh---hhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMI---EAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~---~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+|++...- .....-+-.++++.+++.|+|||.++++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999997421 11122234789999999999999999874
No 220
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.96 E-value=4.1e-09 Score=118.14 Aligned_cols=39 Identities=46% Similarity=0.719 Sum_probs=37.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||+|||+||.+|.+.|++|+|||+++.+||..
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W 49 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW 49 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee
Confidence 689999999999999999999999999999999999954
No 221
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.95 E-value=1.8e-08 Score=111.80 Aligned_cols=31 Identities=52% Similarity=0.756 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
||+|||||+||++||+.|++.|++|+|+|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 8999999999999999999999999999997
No 222
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.95 E-value=6.1e-09 Score=111.28 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=82.6
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~ 696 (842)
+.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++.+++ ++++++++|+.++. ..++
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~ 240 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEV 240 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCC
Confidence 33344444335689999999999999999996 78999999999999999999999998 48999999998764 3357
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||+|+++..-.-+. ..+.+.+.+ ++|++.++++
T Consensus 241 ~D~Vv~dPPr~G~~----~~~~~~l~~-~~~~~ivyvs 273 (315)
T PRK03522 241 PDLVLVNPPRRGIG----KELCDYLSQ-MAPRFILYSS 273 (315)
T ss_pred CeEEEECCCCCCcc----HHHHHHHHH-cCCCeEEEEE
Confidence 99999986522221 233333333 6787777764
No 223
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.95 E-value=2.2e-08 Score=113.11 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCc-EEEEeC---CCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKG-CTIVCG---DGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~-v~V~~~---~G~--~~~ad~VV~A~p~~~ 271 (842)
...++++|++.+++.| ++|+++++|++|+.++++ |.|++. +|+ ++.|++||+|+..+.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 5689999999998887 799999999999986665 766643 353 689999999998774
No 224
>PRK06753 hypothetical protein; Provisional
Probab=98.95 E-value=1.3e-08 Score=112.67 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+.+.|.+.++ +.+|+++++|++|+.+++++.|++++|+++.+|.||-|-..
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~ 150 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGI 150 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCc
Confidence 45555666665 46899999999999988899999999999999999999653
No 225
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.95 E-value=6.3e-09 Score=116.66 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.|.+.|.+.++ +..++++++|++|+.++++|.|++++|+++.||.||.|.....
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 57777777775 4578999999999998889999999998999999999976543
No 226
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.94 E-value=2.1e-08 Score=113.27 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEe---CCC--cEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVC---GDG--SREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~---~~G--~~~~ad~VV~A~p~~~ 271 (842)
...++.+|++.++++|++|+++++|++|+.+++ +|.|++ .+| .+++||+||+|+..+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 568999999999999999999999999998654 576653 234 2689999999998764
No 227
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.94 E-value=9.7e-09 Score=113.82 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeC-CCcEEeCCEEEEccC
Q 035870 215 HSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCG-DGSREFYNSCVMALH 268 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~A~p 268 (842)
..+.+.|.+.+.+.+ ++++.+++|+.++.+++.+.|+.+ +|++++||.||-|=.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCC
Confidence 367778888887767 899999999999999999888888 999999999999954
No 228
>PRK06184 hypothetical protein; Provisional
Probab=98.94 E-value=9.2e-09 Score=118.19 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe---CCCcEEeCCEEEEccChHH-HHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC---GDGSREFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
.+-+.|.+.+.+.|++|+++++|++|+.++++|.|+. .++++++||.||.|..... +.+.+.
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 3445667777777999999999999999988887776 5667899999999976554 334443
No 229
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.93 E-value=4.9e-09 Score=117.39 Aligned_cols=55 Identities=29% Similarity=0.328 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.|++|+++++|++|+.+++++.|++++|+++.||.||.|....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 6777888888888999999999999999999999999999899999999997643
No 230
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.93 E-value=5.2e-09 Score=110.85 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=79.9
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC---------CCCCeEEEEccccCCc-----c-
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG---------LQDLIRLYLCDYRQLA-----K- 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~---------l~~~v~~~~~d~~~~~-----~- 693 (842)
++.+|||+|||-|+-..-.....-..++|+|+|++.++.|++|.++.. ..-...++.+|..... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999998887666655534689999999999999999993211 1124577888864322 2
Q ss_pred -CCCccEEEEcchhhhc--ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 694 -ANKYDRIISCEMIEAV--GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 694 -~~~fD~i~s~~~~~~~--~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
..+||+|-|..++|+. ..+....+++++.+.|||||+++...+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2599999999999987 4456788999999999999999997653
No 231
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.93 E-value=2.1e-08 Score=114.29 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe--CCC--cEEeCCEEEEccChH
Q 035870 211 RWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC--GDG--SREFYNSCVMALHAP 270 (842)
Q Consensus 211 ~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G--~~~~ad~VV~A~p~~ 270 (842)
.++...++..|.+.+++.|++|+++++|++|..++++| .|.+ .+| ..+.|+.||+|+...
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 34556789999999999999999999999999877665 3444 233 357999999998753
No 232
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.93 E-value=3e-09 Score=106.68 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
|.+.+++.+.+|+++++|++|.+++++|.|++.+|+++.||+||+|+..
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 3333344477899999999999999999999999988999999999874
No 233
>PRK05868 hypothetical protein; Validated
Probab=98.93 E-value=2.4e-08 Score=109.89 Aligned_cols=52 Identities=4% Similarity=-0.006 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
.|.+.|.+.+ ..|++++++++|++|+.++++|.|++++|++++||.||-|-.
T Consensus 106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 106 DLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred HHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 3444444433 347899999999999988888999999999999999999954
No 234
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.93 E-value=1.5e-08 Score=100.13 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=95.1
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~ 707 (842)
...++||||+|.|..+..++.. -.+|+++|+|+.|....+++ |. +++ |..++. .+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g~----~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----GF----TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----CC----eEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999887 45899999999886555543 43 333 333343 346899999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-ccchhhhccc-CCCC-CCCHHHHHHHHhhcCCcEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-SSDFIKEYIF-PGGC-LPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-p~~~-~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
...+ +..++++|++.|+|+|++++... .|-..|-+... ...--.+.+- +|.. --.+..+.+.+.. +||+++..
T Consensus 163 Rc~~--P~~LL~~i~~~l~p~G~lilAvV-lP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p-~GF~v~~~ 238 (265)
T PF05219_consen 163 RCDR--PLTLLRDIRRALKPNGRLILAVV-LPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEP-AGFEVERW 238 (265)
T ss_pred ccCC--HHHHHHHHHHHhCCCCEEEEEEE-ecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHh-cCCEEEEE
Confidence 8866 89999999999999999998654 33333322211 0001111111 1111 1124455544554 89999887
Q ss_pred Eec
Q 035870 785 ENI 787 (842)
Q Consensus 785 ~~~ 787 (842)
...
T Consensus 239 tr~ 241 (265)
T PF05219_consen 239 TRL 241 (265)
T ss_pred ecc
Confidence 653
No 235
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.92 E-value=9.6e-09 Score=107.17 Aligned_cols=107 Identities=25% Similarity=0.304 Sum_probs=82.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
+.+.+||+||||+|.++..+++.. ..+|+++|+++++++.+++.+...+ + ..+++++.+|..+.. ..++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345599999999999999998874 4689999999999999999875532 1 247899999976542 247899999
Q ss_pred EcchhhhcChh--hHHHHHHHHHhccccCcEEEEE
Q 035870 702 SCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 702 s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+......-+.. ...++++.++++|+|||.++++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 86542221111 1468899999999999999986
No 236
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.92 E-value=1.6e-08 Score=115.64 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE---EEEeCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC---TIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v---~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+++.|.+.+++.|++|+++++|++|..++++| .+...+|+ ++.|+.||+|+...
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 3688899999999999999999999998876653 34444543 58999999998754
No 237
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.91 E-value=1e-08 Score=114.76 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH-HHHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP-DALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~-~~~~ll~ 277 (842)
.+.+.|.+.+++.|++|+.+++|++|+.++++|.|++.+|+++.||.||.|...+ .+.+.+.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 5666777777777999999999999999999999999999889999999997643 3444443
No 238
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.91 E-value=6.2e-09 Score=106.86 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=89.9
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCE 704 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~ 704 (842)
.+-.+..|||+|||+|.++...|+....+|+++|.|. +++.|++.+..+++.+.|+++.+.++++. |.++.|.|+|-+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3557899999999999999999998556899999987 45999999999999989999999999887 668999999988
Q ss_pred hhhhcChh-hHHHHHHHHHhccccCcEEE
Q 035870 705 MIEAVGHE-FMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 705 ~~~~~~~~-~~~~~~~~~~~~LkpgG~~~ 732 (842)
|-..+=-+ -++.++-.=.+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 86665322 35666666779999999876
No 239
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.4e-08 Score=105.10 Aligned_cols=117 Identities=25% Similarity=0.367 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cccCCc-cC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC-DYRQLA-KA 694 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~-~~ 694 (842)
..+.+++...+++|+.|||==||||++.+.+... |++++|+|++..|++-|+.|++..++++ ..+... |+.+++ ++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence 3356677778899999999999999999998876 9999999999999999999999998774 545555 999999 55
Q ss_pred CCccEEEEcchhhh------cC-hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEA------VG-HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~------~~-~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++|.|++-...-- .. ++-+.++|+.++++||+||++++..
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 57999999653211 11 3447899999999999999999854
No 240
>PLN02672 methionine S-methyltransferase
Probab=98.90 E-value=1.3e-08 Score=121.76 Aligned_cols=107 Identities=21% Similarity=0.379 Sum_probs=84.7
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------CCeEEEEccccCCcc
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQ---------------DLIRLYLCDYRQLAK 693 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~---------------~~v~~~~~d~~~~~~ 693 (842)
+.+|||+|||+|.+++.++++ +..+|+++|+|+++++.|+++++.++++ ++|+++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 568999999999999999988 4579999999999999999999886542 479999999876542
Q ss_pred --CCCccEEEEcchh--------------hhcC-------------------h---hhHHHHHHHHHhccccCcEEEEEe
Q 035870 694 --ANKYDRIISCEMI--------------EAVG-------------------H---EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 --~~~fD~i~s~~~~--------------~~~~-------------------~---~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..+||+||||... +|-+ + +.+..++.+..++|||||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2379999998531 1100 1 124678889999999999999854
Q ss_pred e
Q 035870 736 I 736 (842)
Q Consensus 736 ~ 736 (842)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 3
No 241
>PRK06834 hypothetical protein; Provisional
Probab=98.90 E-value=1.1e-08 Score=116.35 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++|+++++|++|+.+++++.|++.+|++++||.||.|....
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 4555677777777999999999999999999999988888889999999997543
No 242
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.90 E-value=2.1e-08 Score=111.18 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=55.2
Q ss_pred eEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 207 WLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 207 ~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+.+.+| ...++..|++.+++ |++|+.+++|++|+.+++++.|+|.+|+++.||+||+|+.++.
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 3444444 46899999999999 9999999999999998888999999997799999999998774
No 243
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.89 E-value=1.4e-08 Score=116.96 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCC--cEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDG--SREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G--~~~~ad~VV~A~p~~~ 271 (842)
...++.++++.+.++|++|+.+++|++|..+++++ .|++ .+| .++.||.||.|+.++.
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 45788888888899999999999999999987764 3443 233 3789999999999874
No 244
>PRK07190 hypothetical protein; Provisional
Probab=98.89 E-value=3.8e-08 Score=111.69 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
+-+.|.+.+.+.|++|+++++|++|+.+++++.|++.+|++++|+.||.|.....
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4445566677779999999999999999999888888888999999999987544
No 245
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.88 E-value=6.7e-09 Score=103.86 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=132.2
Q ss_pred hHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHH
Q 035870 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVK 649 (842)
Q Consensus 570 ~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~ 649 (842)
..+..+.|++||.... ...+. ....|.-+|-..- .+.+..++-.+-.++++.++|+|||-|+-++-.-+
T Consensus 69 ~~~~~~~Va~HYN~~~---e~g~e-~Rq~S~Ii~lRnf-------NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~k 137 (389)
T KOG1975|consen 69 NESKSSEVAEHYNERT---EVGRE-KRQRSPIIFLRNF-------NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDK 137 (389)
T ss_pred ccchhHHHHHHHHHHH---HHhHh-hhccCceeehhhh-------hHHHHHHHHHHHhccccccceeccCCcccHhHhhh
Confidence 3444677999996332 22222 1123333321110 12223333333357889999999999998877766
Q ss_pred hcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEccccCC------c-cCCCccEEEEcchhhhc--ChhhHH
Q 035870 650 RTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----LIRLYLCDYRQL------A-KANKYDRIISCEMIEAV--GHEFME 715 (842)
Q Consensus 650 ~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~~~~------~-~~~~fD~i~s~~~~~~~--~~~~~~ 715 (842)
..-.+++|+||++..++.|++|.++..-.. .+.|+.+|...- + .+.+||+|-|.+++|+. ..+..+
T Consensus 138 AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 138 AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHH
Confidence 533589999999999999999987532211 378899995321 1 33459999999888765 455678
Q ss_pred HHHHHHHhccccCcEEEEEeecCC---------------Ccc----ccccc----CccchhhhcccCC---CCCC----C
Q 035870 716 EFFGCCESLLAEDGLLVLQFISIP---------------DER----YNEYR----LSSDFIKEYIFPG---GCLP----S 765 (842)
Q Consensus 716 ~~~~~~~~~LkpgG~~~~~~~~~~---------------~~~----~~~~~----~~~~~~~~~i~p~---~~~~----~ 765 (842)
.+++++.+.|||||+++-+.+... +.. |.... ....|-.+|.|.- -..| .
T Consensus 218 ~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~ 297 (389)
T KOG1975|consen 218 IALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVP 297 (389)
T ss_pred HHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcceeee
Confidence 899999999999999998433210 000 11000 0122223333310 0011 2
Q ss_pred HHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHH
Q 035870 766 LSRITSAMSVASRLCVEQVENIGIHYYQTLRCWR 799 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~ 799 (842)
...+. .+.+..|++++..+.+-.-|..-+..|.
T Consensus 298 F~~l~-~lae~y~LeLv~~k~F~df~~e~~~~~~ 330 (389)
T KOG1975|consen 298 FPTLV-SLAEEYGLELVFVKPFADFYEEELKKNE 330 (389)
T ss_pred hHHHH-HHHHhcCcEEEEeccHHHHHHHhccccc
Confidence 23333 4444599999999988877777777773
No 246
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.87 E-value=1.5e-08 Score=102.47 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
-+.+..+++.. +..+|||||+++|.-++.+|+. .+.+|+.+|.+++..+.|++.++..|+.++|+++.+|+.+..
T Consensus 68 g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 68 GQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 34444444443 4569999999999999999976 467999999999999999999999999999999999976642
Q ss_pred ----c----CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 693 ----K----ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 693 ----~----~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
. .++||.|+.-.- .+.+..+++.+.++|+|||.+++..+-.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred HHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 1 268999997532 3457899999999999999999865443
No 247
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.87 E-value=3.4e-08 Score=109.94 Aligned_cols=60 Identities=12% Similarity=-0.125 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH-HHHHhh
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP-DALKIL 276 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~-~~~~ll 276 (842)
.+.+.|.+.+++.| ++++ ++.|++|..+++++.|++.+|+++.||.||.|...+ .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 56677878887777 8888 999999998888899999899889999999997654 233443
No 248
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.86 E-value=2.5e-08 Score=114.13 Aligned_cols=58 Identities=14% Similarity=-0.065 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC----cEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG----SREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VV~A~p~~~ 271 (842)
...++..++..++++|++++.+++|++|..+++.+.|++.++ .++.|+.||.|+.++.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 357888888888899999999999999999887777776654 2589999999998874
No 249
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.86 E-value=1.4e-07 Score=95.07 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=35.0
Q ss_pred HHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 378 SLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 378 ~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
..-+.+.+-..|+|+|-+|.|+|+ ..+...|+..|+.|+..+
T Consensus 442 ngViG~HP~y~Nly~atGFsghGv-qqs~avgRAiaElIldG~ 483 (509)
T KOG2853|consen 442 NGVIGEHPLYTNLYMATGFSGHGV-QQSPAVGRAIAELILDGA 483 (509)
T ss_pred CCcccCCcceeeeeeeecccccch-hcchHHHHHHHHHHhcCc
Confidence 334444555679999999999999 899999999999999876
No 250
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.85 E-value=1.8e-08 Score=112.89 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhhh-cCceEEeCCCeeEEEeC-CCcEEEE---eCCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLES-WGCQIRTSSEVCSVLPA-DKGCTIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~-~~~v~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
...+.++|++.+.+ .|++|+++++|+.|.++ +++|.|+ +.+|+ ++.||+||+|+.++.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 45788999998864 48999999999999988 6678775 44553 689999999998775
No 251
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.85 E-value=4.5e-08 Score=109.77 Aligned_cols=112 Identities=14% Similarity=0.223 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
..++.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+|+++++.|+++++.+++. +++++.+|+.+..
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHH
Confidence 34556667777788899999999999999999987 679999999999999999999999885 8999999987632
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+++||+|+....-.-+ ...+++.+.+ ++|++.++++
T Consensus 357 ~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 23579999986552211 2455666554 7898877773
No 252
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.84 E-value=1.9e-08 Score=113.07 Aligned_cols=55 Identities=20% Similarity=0.087 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCC-C--cEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGD-G--SREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~-G--~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+. +++++++++|++|+.+++++.|++.+ + .+++||.||.|....
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGAR 180 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCC
Confidence 4666777777654 68999999999999988888887753 2 369999999996543
No 253
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.2e-08 Score=93.51 Aligned_cols=79 Identities=23% Similarity=0.361 Sum_probs=68.8
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM 705 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~ 705 (842)
..-.|.+|+|+|||||.+++.++-....+|+|+|+++++++.+++++.+ +..+|.++++|+.+.. +.||.++.|..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEECCC
Confidence 3446789999999999999988876447999999999999999999988 4458999999999998 88999999987
Q ss_pred hhh
Q 035870 706 IEA 708 (842)
Q Consensus 706 ~~~ 708 (842)
+-.
T Consensus 118 FG~ 120 (198)
T COG2263 118 FGS 120 (198)
T ss_pred Ccc
Confidence 643
No 254
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.84 E-value=9.9e-08 Score=103.44 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCC--cEEeCCEEEEccChHHHHHhhc
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDG--SREFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VV~A~p~~~~~~ll~ 277 (842)
.++.++|.+.+++.|+++..+++|.++..+++++. |.+.++ .++.||+||+|+.++....++.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHh
Confidence 57889999999999999999999999999888865 665665 3799999999998884444433
No 255
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.84 E-value=3.5e-08 Score=95.73 Aligned_cols=114 Identities=23% Similarity=0.352 Sum_probs=86.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCK---------YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~---------v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (842)
..|+.....++++.|||--||+|++.+.++.. .+.. +.|+|+++++++.|+++++..++.+.+.+.+.|+
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 46677778889999999999999999998877 3444 8899999999999999999999988999999999
Q ss_pred cCCc-cCCCccEEEEcchhhh-cC-----hhhHHHHHHHHHhccccCcEEE
Q 035870 689 RQLA-KANKYDRIISCEMIEA-VG-----HEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 689 ~~~~-~~~~fD~i~s~~~~~~-~~-----~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
.+++ .++++|.|+++..+.. ++ .+-+..+++++.++|++...++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999 7789999999875432 12 2346788999999999933333
No 256
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.83 E-value=2.5e-08 Score=112.75 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-c---EEEEeCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-G---CTIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~---v~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+++.|.+.+++.|++|+++++|++|..+++ + +.+.+.+|+ .+.++.||+|+...
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 46889999999999999999999999998643 3 344444554 36899999998765
No 257
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.83 E-value=9.3e-08 Score=106.14 Aligned_cols=36 Identities=39% Similarity=0.578 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
+||+|||||+||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
No 258
>PRK08013 oxidoreductase; Provisional
Probab=98.83 E-value=4.1e-08 Score=109.50 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+-+.|.+.+++. |++++++++|++|+.+++++.|++.+|++++||.||-|-..
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~ 166 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGA 166 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCC
Confidence 4556677777664 78999999999999998899999999999999999999653
No 259
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.83 E-value=2.3e-08 Score=97.59 Aligned_cols=114 Identities=18% Similarity=0.305 Sum_probs=74.3
Q ss_pred HHHHcCCCCCCeEEEeccCch----HHHHHHHHh----c--CCEEEEEcCCHHHHHHHHHH------H--------HH--
Q 035870 621 LIEKARVSKGQEVLEIGCGWG----TLAIEIVKR----T--GCKYTGITLSEEQLKYAEMK------V--------KE-- 674 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G----~~~~~la~~----~--~~~v~gid~s~~~~~~a~~~------~--------~~-- 674 (842)
+++.....+.-+|+..||++| .+++.+.+. . ..+|+|+|+|+.+++.|++- + ++
T Consensus 23 ~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 23 LLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp -----CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred hccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 333333345679999999999 444545451 1 36999999999999999871 0 00
Q ss_pred ---cC--------CCCCeEEEEccccC-CccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 675 ---AG--------LQDLIRLYLCDYRQ-LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 675 ---~~--------l~~~v~~~~~d~~~-~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+ +..+|+|...|..+ .+..+.||+|+|..++-++..+....+++.+++.|+|||+|++.
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00 11579999999888 44668999999999999999999999999999999999999993
No 260
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.83 E-value=5.1e-08 Score=111.47 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC---Cc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD---GS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VV~A~p~~~ 271 (842)
...++..+++.+.++|++|+.+++|++|..+++.+.|++.+ |+ ++.|+.||.|+.++.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 35788888888888999999999999999887777776653 53 689999999998874
No 261
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.83 E-value=9.8e-08 Score=107.84 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+...|.+.+.+. ++++ +.+.|+.|..+++++ .|.+.+|..+.|+.||+|+....
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 3455566666554 6787 566799998887775 58899999999999999998654
No 262
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.83 E-value=4.1e-08 Score=94.86 Aligned_cols=110 Identities=20% Similarity=0.343 Sum_probs=78.1
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEccccCCc-----cCCCc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAG--LQDLIRLYLCDYRQLA-----KANKY 697 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~-----~~~~f 697 (842)
...++.+|||+|||+|..++.+++. ...+|+.+|.++ .++..+.+++.++ ...++++...|..+.. ...+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3467889999999999999999988 678999999999 9999999999877 5668899998875522 34689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+|+...+++.- +..+.+++.+.++|+|+|.+++....+
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999874 558999999999999999977755433
No 263
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.82 E-value=3.8e-08 Score=108.24 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEE-EeCCCc--EEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTI-VCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V-~~~~G~--~~~ad~VV~A~p~~ 270 (842)
++.+.|.+.+++.|++|+++++|++++.+++++.+ .+.+|+ ++.||.||+|+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 78899999999999999999999999988777654 344553 58999999998864
No 264
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.82 E-value=1.5e-08 Score=100.90 Aligned_cols=104 Identities=26% Similarity=0.301 Sum_probs=90.0
Q ss_pred CeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEEEcch
Q 035870 631 QEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRIISCEM 705 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~s~~~ 705 (842)
-.+||||||.|.+...+|++ |...++|||+....+..|.+++.+.++. |+.+++.|+..+. ++++.|.|..++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999998 8899999999999999999999999997 8999999987654 5569999999876
Q ss_pred hhhcChh------hHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHE------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
=-|.... -.+.+++.+.+.|||||.+.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5444322 24789999999999999999843
No 265
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.82 E-value=1.9e-08 Score=105.16 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+|+.+++.+++++...+..++++++++|+.+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 345668888888899999999999999999999987 779999999999999999999877766689999999987653
Q ss_pred CCccEEEEcchhh
Q 035870 695 NKYDRIISCEMIE 707 (842)
Q Consensus 695 ~~fD~i~s~~~~~ 707 (842)
..||.|+++....
T Consensus 100 ~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 PYFDVCVANVPYQ 112 (294)
T ss_pred cccCEEEecCCcc
Confidence 4789999976544
No 266
>PRK09126 hypothetical protein; Provisional
Probab=98.82 E-value=2.6e-08 Score=111.03 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=42.9
Q ss_pred HHHHHHHHhh-hcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLE-SWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~-~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.|.+.+. ..|++|+++++|++++.+++++.|++++|+++.||.||.|....
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 3334444443 35899999999999999888889998899899999999997643
No 267
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.81 E-value=2.9e-08 Score=110.43 Aligned_cols=62 Identities=29% Similarity=0.461 Sum_probs=48.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC--CCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL--GGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||++||++|+.|++.|++|+|+|+++.. .+ +.++..+ .++..++++++|+.....
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~------------~~~a~~l----~~~~~~~l~~lGl~~~l~ 66 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG------------RIRAGVL----EQGTVDLLREAGVGERMD 66 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc------------ccceeEE----CHhHHHHHHHcCChHHHH
Confidence 48999999999999999999999999999998742 22 1122233 357779999999865543
No 268
>PRK07045 putative monooxygenase; Reviewed
Probab=98.81 E-value=5e-08 Score=108.48 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLES-WGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+ .|++++++++|+.|+.++++ +.|++++|+++.+|.||.|-...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 455556666543 47899999999999987766 47888899999999999996544
No 269
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=108.04 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=130.7
Q ss_pred HhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHH-HHHcCCCCCCeEEEeccCchHHHHHHHHh
Q 035870 572 QARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLL-IEKARVSKGQEVLEIGCGWGTLAIEIVKR 650 (842)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l-~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (842)
...+.++..|+...++|...+...++.+.- + +.....+. ......+ .-.....++..++|+|||.|....+++.-
T Consensus 56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-~--e~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f 131 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDLYERNWGQSFHFGRI-P--EGNSNEMF-WIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF 131 (364)
T ss_pred ccchHHHHHhcccchhhhhhhccchhccCc-c--chhHHHHH-HHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh
Confidence 445678899998889999988877766433 2 22223332 2222222 22344678889999999999999999988
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCc
Q 035870 651 TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729 (842)
Q Consensus 651 ~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG 729 (842)
.+++++|+|.++.++..+.......++.++..++.+|+.+.+ ++..||.+.+..+.+|.++ ....++++.+++||||
T Consensus 132 ~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~--~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 132 KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPD--LEKVYAEIYRVLKPGG 209 (364)
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCc--HHHHHHHHhcccCCCc
Confidence 779999999999999999999888888888888999999998 8899999999999999988 8999999999999999
Q ss_pred EEEEEeecCC
Q 035870 730 LLVLQFISIP 739 (842)
Q Consensus 730 ~~~~~~~~~~ 739 (842)
+++...+...
T Consensus 210 ~~i~~e~i~~ 219 (364)
T KOG1269|consen 210 LFIVKEWIKT 219 (364)
T ss_pred eEEeHHHHHh
Confidence 9999766543
No 270
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.81 E-value=1.6e-07 Score=93.90 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=93.3
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEE
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRII 701 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~ 701 (842)
..-+||||.||.|.....+.+. +. .+|...|.|+..++..++.+++.|+++-++|.++|+.+.. .+...++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5569999999999999888777 43 6899999999999999999999999977799999987754 245689999
Q ss_pred EcchhhhcChhh-HHHHHHHHHhccccCcEEEEEe
Q 035870 702 SCEMIEAVGHEF-MEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 702 s~~~~~~~~~~~-~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++.+|.+++.. ....++.+.+.+.|||+++...
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999999865 5567999999999999999854
No 271
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.80 E-value=4.4e-08 Score=106.97 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=85.4
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~f 697 (842)
.+.+.+...++.+|||++||+|.+++.++.. +.+|+|+|+|+.+++.|+++++.+++. +++++++|+.+.. ..++|
T Consensus 224 ~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 301 (374)
T TIGR02085 224 TARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAP 301 (374)
T ss_pred HHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCC
Confidence 3334444345679999999999999999976 789999999999999999999999986 8999999987654 22569
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+|+.+..-..+. ..+++.+.+ ++|++.++++.
T Consensus 302 D~vi~DPPr~G~~----~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 302 ELVLVNPPRRGIG----KELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred CEEEECCCCCCCc----HHHHHHHHh-cCCCeEEEEEe
Confidence 9999988754332 445555543 78999888853
No 272
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.80 E-value=5.8e-08 Score=107.66 Aligned_cols=54 Identities=9% Similarity=-0.013 Sum_probs=43.6
Q ss_pred HHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLES-WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+-..|.+.+.+ .+++|+.+++|++++.+++++.|++++|.+++||.||.|....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGAN 166 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 33445555443 2689999999999999999999999999999999999997644
No 273
>PRK07538 hypothetical protein; Provisional
Probab=98.80 E-value=6.6e-08 Score=108.37 Aligned_cols=61 Identities=33% Similarity=0.513 Sum_probs=47.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
|||+|||||++||++|+.|+++|++|+|+|+++.+.- .|.. + ...++..+.++++|+....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-------------~g~g-i--~l~p~~~~~L~~lgl~~~l 61 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP-------------LGVG-I--NLLPHAVRELAELGLLDAL 61 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc-------------cCcc-e--eeCchHHHHHHHCCCHHHH
Confidence 7999999999999999999999999999999875421 0111 1 1245778888999886553
No 274
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.80 E-value=8.3e-08 Score=107.07 Aligned_cols=62 Identities=35% Similarity=0.440 Sum_probs=47.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
++|+|||||++||++|..|+++|++|+|+|+.+.+.- . |. .+ ...++..++++++|+.....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-------~------g~-gi--~l~~~~~~~L~~~Gl~~~l~ 64 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-------V------GA-GL--QLAPNAMRHLERLGVADRLS 64 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-------C------Cc-cc--eeChhHHHHHHHCCChHHHh
Confidence 5899999999999999999999999999999765421 1 11 01 12467889999999865543
No 275
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.79 E-value=1.3e-07 Score=106.01 Aligned_cols=33 Identities=48% Similarity=0.694 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
.||+|||||+||++||+.|+++|++|+|+|++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999999999999999999999999974
No 276
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=4.1e-08 Score=94.42 Aligned_cols=106 Identities=22% Similarity=0.400 Sum_probs=78.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcC------------------------------
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAG------------------------------ 676 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~------------------------------ 676 (842)
-.+..+|||||-.|.++..+|+.+++ .|.|+||++..++.|++.++..-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45678999999999999999999665 69999999999999999865311
Q ss_pred ----CCCCeEEEEcc-------ccCCccCCCccEEEEcch--hhhc--ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 677 ----LQDLIRLYLCD-------YRQLAKANKYDRIISCEM--IEAV--GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 677 ----l~~~v~~~~~d-------~~~~~~~~~fD~i~s~~~--~~~~--~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+++++.+...+ +.++ ....||+|+|..+ .-|+ +++.+..+|+++.++|.|||++++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 11122222222 2211 3468999998543 3344 5778999999999999999999983
No 277
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.79 E-value=6.3e-08 Score=107.85 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+.+. |++++.+++|+++..+++++.|++.+|++++||.||.|....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGAN 168 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 4556666666665 899999999999999888899999899899999999997644
No 278
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.79 E-value=5.2e-08 Score=108.97 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 217 YVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 217 l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+-+.|.+.+.+. |++|+++++|++|+.+++++.|++++|++++||.||.|-..
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~ 166 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGA 166 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCC
Confidence 444555555443 68999999999999988889999999999999999999764
No 279
>PRK08244 hypothetical protein; Provisional
Probab=98.79 E-value=3.9e-08 Score=112.77 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=46.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++||++|..|++.|++|+|+|+++...- . ..+. ...++..++++++|+....
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~-------~-----~ra~----~l~~~~~e~l~~lGl~~~l 63 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVP-------Y-----SKAL----TLHPRTLEILDMRGLLERF 63 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-------C-----ccee----EecHHHHHHHHhcCcHHHH
Confidence 3899999999999999999999999999999765311 0 0111 1356788999999986543
No 280
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.77 E-value=1.7e-08 Score=110.89 Aligned_cols=61 Identities=31% Similarity=0.484 Sum_probs=45.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
||+|||||++||++|..|+++|++|+|+|+++..--.. .+..+ .++..++++++|+.....
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~------------~~~~l----~~~~~~~l~~lgl~~~~~ 63 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG------------RGIGL----SPNSLRILQRLGLLDEIL 63 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS------------SSEEE----EHHHHHHHHHTTEHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccc------------ccccc----ccccccccccccchhhhh
Confidence 89999999999999999999999999999987643311 11122 356778899999876554
No 281
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.77 E-value=2.4e-08 Score=97.45 Aligned_cols=100 Identities=24% Similarity=0.398 Sum_probs=76.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~ 705 (842)
.++++.|+|+.||.|.+++.+|+. .+++|+++|++|..++..+++++.+++.+++..+++|.+++.+.+.||.|+++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 578999999999999999999984 4678999999999999999999999999999999999999876789999999653
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
-. -..++..+.+++|+||.+.
T Consensus 179 ~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS------GGGGHHHHHHHEEEEEEEE
T ss_pred HH------HHHHHHHHHHHhcCCcEEE
Confidence 22 2356777888999998864
No 282
>PRK09897 hypothetical protein; Provisional
Probab=98.77 E-value=7.8e-08 Score=108.76 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcC--ceEEeCCCeeEEEeCCCcEEEEeCC-CcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWG--CQIRTSSEVCSVLPADKGCTIVCGD-GSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G--~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+++.| ++++.+++|+.|+.+++++.|++.+ |..+.||+||+|+..
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 44455666666666 6888999999999999999998865 467999999999874
No 283
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.76 E-value=1.1e-07 Score=105.90 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.++..+++++|++++.+++++.|++++|++++||.||.|....
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCC
Confidence 5666777777766655589999999999999999999999899999999997643
No 284
>PLN02463 lycopene beta cyclase
Probab=98.76 E-value=9.4e-08 Score=106.54 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+.+.|++++ +++|++|+.+++++.|++++|++++||.||.|+...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 455667777777789986 679999999988899999999899999999998654
No 285
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.75 E-value=1.8e-07 Score=108.31 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=48.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||++||++|..|++.|++|+|+|++..++...+. + ...++..++++++|+.....
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra--------------~--~l~~~~~~~L~~lGl~~~l~ 72 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRA--------------V--GIDDEALRVLQAIGLADEVL 72 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCce--------------e--eeCHHHHHHHHHcCChhHHH
Confidence 48999999999999999999999999999998765432111 1 12457789999999876543
No 286
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.75 E-value=9.5e-08 Score=90.91 Aligned_cols=51 Identities=24% Similarity=0.368 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhcCceEE-eCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 217 YVNKVRKQLESWGCQIR-TSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~-~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
..+.+.+.+ ..|++|. ...+|+.|...++++.|.+++|..+.||+||+|+.
T Consensus 103 ~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 103 RFDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred HHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 344444444 3355543 57799999999999999999999999999999985
No 287
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.75 E-value=6e-08 Score=109.04 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHHH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPDA 272 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~~ 272 (842)
+...+++.|.+.++++|++|+++++|+++..++++| .|.. .+|+ ++.|+.||+|+.....
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456789999999999999999999999999988875 3333 3565 5789999999876543
No 288
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.75 E-value=4.2e-08 Score=101.65 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
.+.++.+++.+++.++++|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+++.
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL- 89 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc-
Confidence 356678888888889999999999999999999998 78999999999999999988754 2489999999988763
Q ss_pred CCccEEEEcchhh
Q 035870 695 NKYDRIISCEMIE 707 (842)
Q Consensus 695 ~~fD~i~s~~~~~ 707 (842)
..||.|+++..+.
T Consensus 90 ~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 PEFNKVVSNLPYQ 102 (258)
T ss_pred hhceEEEEcCCcc
Confidence 3589999987754
No 289
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.75 E-value=1e-07 Score=105.65 Aligned_cols=64 Identities=31% Similarity=0.419 Sum_probs=48.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
+||+|||||++||++|..|+++|++|+|+|+++..- .. -+.|+..+ .++..++++++|+.....
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~--~~--------~~~~a~~l----~~~~~~~L~~lGl~~~l~ 66 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDY--VL--------GRIRAGVL----EQGTVDLLREAGVDERMD 66 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcc--cC--------CceeEeeE----CHHHHHHHHHCCChHHHH
Confidence 489999999999999999999999999999987410 00 02233333 356789999999875543
No 290
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.74 E-value=1.7e-07 Score=96.97 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-E-EEEeCC------C---------cEEeCCEEEEc--cChHHHHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-C-TIVCGD------G---------SREFYNSCVMA--LHAPDALK 274 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~------G---------~~~~ad~VV~A--~p~~~~~~ 274 (842)
...+++-|.+++++.|++|+-+..+.++..+.++ | .|.|.| | -++.|..-|+| +......+
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskq 261 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQ 261 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHH
Confidence 3488888999999999999999999999988765 3 566542 2 36889999999 56666666
Q ss_pred hhc
Q 035870 275 ILG 277 (842)
Q Consensus 275 ll~ 277 (842)
++.
T Consensus 262 i~k 264 (621)
T KOG2415|consen 262 IIK 264 (621)
T ss_pred HHH
Confidence 654
No 291
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.74 E-value=1.4e-07 Score=104.24 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.|-+.|.+.+++.+ ++++++++|++|..+++++.|++.++ +++||.||.|-..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~ 158 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGA 158 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCC
Confidence 66777777777665 78999999999999999999998777 8999999999543
No 292
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.73 E-value=8.2e-08 Score=102.84 Aligned_cols=109 Identities=25% Similarity=0.264 Sum_probs=90.5
Q ss_pred CCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----cCCCccEEEE
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----KANKYDRIIS 702 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----~~~~fD~i~s 702 (842)
|++|||+-|=||+++.++|.. |+ +||+||+|...++.|+++++-+|++ +++.++++|+.+.- ...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 999999999999999999987 76 9999999999999999999999985 46899999977654 3459999998
Q ss_pred cchhhh-------cChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 703 CEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 703 ~~~~~~-------~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
-..-.. -....+..++..+.++|+|||.+++.+....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 643211 1123478889999999999999999766543
No 293
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=8.3e-08 Score=93.95 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=82.4
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c---cCC-CccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A---KAN-KYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~~-~fD~i~s~ 703 (842)
++.++||++||+|.+++.++.+...+|+++|.++.+++.++++++.+++.++++++++|+.+. . ... .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999999999999844489999999999999999999999877899999998543 2 122 47888887
Q ss_pred chhhhcChhhHHHHHHHHH--hccccCcEEEEEee
Q 035870 704 EMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQFI 736 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~~ 736 (842)
..+.. ......++.+. .+|+++|.+++...
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 76643 22455555443 47899999888643
No 294
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.72 E-value=3.5e-08 Score=103.04 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...+.+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+|+++++.+++++.. ++++++++|+.+++.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 34467788888889999999999999999999998 56999999999999999987642 48999999999887322
Q ss_pred -CccEEEEcchh
Q 035870 696 -KYDRIISCEMI 706 (842)
Q Consensus 696 -~fD~i~s~~~~ 706 (842)
.+|.|++|...
T Consensus 104 ~~~~~vv~NlPY 115 (272)
T PRK00274 104 LQPLKVVANLPY 115 (272)
T ss_pred cCcceEEEeCCc
Confidence 25999998664
No 295
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.72 E-value=1.6e-07 Score=85.22 Aligned_cols=144 Identities=19% Similarity=0.144 Sum_probs=111.9
Q ss_pred hhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEE
Q 035870 579 RHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYT 656 (842)
Q Consensus 579 ~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~ 656 (842)
.-+|.--.|++-|.+...+-..-+-++ --..+.|...++...|.-|||+|.|+|-++..+.++ ....++
T Consensus 7 ~~f~~e~~F~k~wi~~PrtVGaI~PsS---------s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~ 77 (194)
T COG3963 7 RKFDEEISFFKGWIDNPRTVGAILPSS---------SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLT 77 (194)
T ss_pred hhHHHHHHHHHHHhcCCceeeeecCCc---------HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceE
Confidence 334444467777877654443222111 122356778888899999999999999999999988 446899
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcE
Q 035870 657 GITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 657 gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
+++.|++......++.. .++++++|+.++. .+..||.|+|.-.+-.++.....++++++...|.+||.
T Consensus 78 ~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~ 151 (194)
T COG3963 78 AIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGP 151 (194)
T ss_pred EEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCe
Confidence 99999999998887753 5679999987775 46789999999888888877788999999999999999
Q ss_pred EEEEeec
Q 035870 731 LVLQFIS 737 (842)
Q Consensus 731 ~~~~~~~ 737 (842)
++--..+
T Consensus 152 lvqftYg 158 (194)
T COG3963 152 LVQFTYG 158 (194)
T ss_pred EEEEEec
Confidence 8886665
No 296
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.72 E-value=3e-08 Score=94.74 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=103.1
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEccccCCc---cCCCc
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGL-QDLIRLYLCDYRQLA---KANKY 697 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l-~~~v~~~~~d~~~~~---~~~~f 697 (842)
....++.|.+|||.+.|-|..++.++++ |+ +|..++.++..++.|+-|-=+.++ +.+++++.+|+.++- ++.+|
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3445678999999999999999999998 66 999999999999998765322222 225799999976654 67899
Q ss_pred cEEEEcch-hhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 698 DRIISCEM-IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 698 D~i~s~~~-~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
|+|+--.. |.+.++=+-.++.++++|+|||||+++--. ..|...|... --...+.+.+.+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv-G~Pg~ryrG~-----------------d~~~gVa~RLr~- 267 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV-GNPGKRYRGL-----------------DLPKGVAERLRR- 267 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe-CCCCcccccC-----------------ChhHHHHHHHHh-
Confidence 99997543 444454466899999999999999987533 3343333211 113455667776
Q ss_pred CCcEEEEE
Q 035870 777 SRLCVEQV 784 (842)
Q Consensus 777 ~gf~v~~~ 784 (842)
.||++++.
T Consensus 268 vGF~~v~~ 275 (287)
T COG2521 268 VGFEVVKK 275 (287)
T ss_pred cCceeeee
Confidence 89986543
No 297
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.71 E-value=2.6e-07 Score=107.35 Aligned_cols=62 Identities=37% Similarity=0.527 Sum_probs=48.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||++||++|+.|++.|++|+|+|+++.+....+. .. ..++..++++++|+.....
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra------------~~----l~~~~~~~l~~lGl~~~l~ 85 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRA------------IC----FAKRSLEIFDRLGCGERMV 85 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeE------------EE----EcHHHHHHHHHcCCcHHHH
Confidence 38999999999999999999999999999998755331111 11 2457789999999876543
No 298
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.71 E-value=1.9e-07 Score=104.24 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=42.7
Q ss_pred HHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 218 VNKVRKQLES-WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 218 ~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
-+.|.+.+.+ .|++++++++|++|..+++++.|++++|.++.+|.||.|....
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 3445555444 3789999999999998888899999899889999999997643
No 299
>PLN02661 Putative thiazole synthesis
Probab=98.71 E-value=2.6e-07 Score=97.45 Aligned_cols=37 Identities=41% Similarity=0.642 Sum_probs=34.7
Q ss_pred cEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG~ 38 (842)
||+|||||++||+||++|++. |++|+|+|++..+||.
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 899999999999999999986 8999999999998883
No 300
>PRK07121 hypothetical protein; Validated
Probab=98.70 E-value=1.7e-07 Score=107.25 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cE-EEEeC-CCc--EEeC-CEEEEccChHH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GC-TIVCG-DGS--REFY-NSCVMALHAPD 271 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v-~V~~~-~G~--~~~a-d~VV~A~p~~~ 271 (842)
+...+.+.|.+.+++.|++|+++++|++|..+++ ++ .|... +|+ .+.| +.||+|+....
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3567899999999999999999999999988753 43 34332 333 4788 99999987653
No 301
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.70 E-value=7.7e-08 Score=105.25 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=55.4
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHH
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
..|.|..| ...++++|+..+++.|+.|..|++|++|....++ +.|.|.-| .+++.+||-|+..|+
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 34555555 5789999999999999999999999999887665 58999999 699999999998875
No 302
>PRK06126 hypothetical protein; Provisional
Probab=98.68 E-value=8.4e-08 Score=111.55 Aligned_cols=62 Identities=31% Similarity=0.407 Sum_probs=47.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.+|+|||||++||++|..|+++|++|+|+|+++...- . ..+. ...++..++++++|+.....
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~-------~-----~ra~----~l~~r~~e~L~~lGl~~~l~ 69 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF-------N-----PKAN----TTSARSMEHFRRLGIADEVR 69 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC-------C-----Cccc----cCCHHHHHHHHhcChHHHHH
Confidence 3899999999999999999999999999998763221 0 0111 13467789999999876554
No 303
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.68 E-value=1.9e-07 Score=103.96 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+.+.|.+.+.+.|++++ +++|+.+..+ ++.+.|++.+|++++|+.||.|++...
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 566677777777788885 6689999887 556888888888899999999998764
No 304
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.66 E-value=3.6e-07 Score=106.45 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+++.|++|+.+++|++|..++++| .|. ..+|+ .+.|+.||+|+....
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 4678888888888899999999999998876664 232 24564 589999999988653
No 305
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.66 E-value=8.4e-08 Score=99.13 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCeEEEeccCch----HHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHH------------------HH--------
Q 035870 630 GQEVLEIGCGWG----TLAIEIVKRT-----GCKYTGITLSEEQLKYAEMKV------------------KE-------- 674 (842)
Q Consensus 630 ~~~vLDiGcG~G----~~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~------------------~~-------- 674 (842)
.-+|+..||++| .+++.+.+.. ..+|+|+|+|+.+++.|++-+ ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 3444444431 368999999999999998741 00
Q ss_pred ----cCCCCCeEEEEccccCCc--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 675 ----AGLQDLIRLYLCDYRQLA--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 675 ----~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..+...|+|.+.|..+.+ +.+.||+|+|.+++.|+.++....+++.+++.|+|||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012356899999987743 358999999999999999988999999999999999999883
No 306
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.65 E-value=6.9e-08 Score=109.93 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC--cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG--SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++++++++|++|+.+++++.|.+.+| +++.+|.||+|+..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence 46777888889889999999999999998888888877777 47999999999864
No 307
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.65 E-value=1.6e-07 Score=100.49 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=40.4
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+++.|+++++ ++|++|+.+++++.|++.+|+++.+|+||+|+...
T Consensus 63 l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 63 MKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 33444555889998 89999999888888998888899999999998753
No 308
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.64 E-value=1.2e-07 Score=93.53 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=41.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCC------CeEEEEecCCCCCCCceeEeeCCeeeec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG------VEVVLYEKDDYLGGHAKTVTFDGVDLDL 51 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G------~~V~VlEa~~~~GG~~~s~~~~g~~~d~ 51 (842)
|+|+||||||.|.++||+|++++ .+|+++|+....|| +|....|+-.+.
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g--aSGkasgfLa~w 65 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG--ASGKASGFLAKW 65 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc--cccccchhhHhh
Confidence 68999999999999999999997 79999999998888 555556655443
No 309
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=1.6e-07 Score=103.30 Aligned_cols=38 Identities=50% Similarity=0.753 Sum_probs=36.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
|+|+|||||+|||++|.+|.+.|++|+||||.+.+||-
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl 44 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce
Confidence 68999999999999999999999999999999999993
No 310
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=6.8e-08 Score=91.71 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=87.4
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~ 707 (842)
....++|||||-|....++..+.-.+++-+|.|..|++.++.. +..++ .+...++|-+.++ .+.++|+|++...+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence 3457999999999999999887445899999999999998754 33333 4677888988888 778999999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++.+ ++..+.+++..|||+|.++-.-+.
T Consensus 149 W~Nd--LPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 149 WTND--LPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred hhcc--CchHHHHHHHhcCCCccchhHHhc
Confidence 9977 999999999999999998875443
No 311
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.63 E-value=2.8e-07 Score=88.04 Aligned_cols=127 Identities=17% Similarity=0.277 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCC-CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 616 RKVSLLIEKARVSK-GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
+-++.+++.+.-.| +..|-|+|||.+.++..+.. +.+|...|+-.. +-.+..+|+.++| +
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~----------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP----------------NPRVTACDIANVPLE 119 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------------STTEEES-TTS-S--
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC----------------CCCEEEecCccCcCC
Confidence 34567777776544 57999999999999865432 468999998642 1246789999999 8
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAM 773 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~ 773 (842)
+++.|++|.+-++- +. ++..++++..|+|||||.+.|.++... +..+.+..+.+
T Consensus 120 ~~svDv~VfcLSLM--GT-n~~~fi~EA~RvLK~~G~L~IAEV~SR-----------------------f~~~~~F~~~~ 173 (219)
T PF05148_consen 120 DESVDVAVFCLSLM--GT-NWPDFIREANRVLKPGGILKIAEVKSR-----------------------FENVKQFIKAL 173 (219)
T ss_dssp TT-EEEEEEES-----SS--HHHHHHHHHHHEEEEEEEEEEEEGGG------------------------S-HHHHHHHH
T ss_pred CCceeEEEEEhhhh--CC-CcHHHHHHHHheeccCcEEEEEEeccc-----------------------CcCHHHHHHHH
Confidence 89999999876543 32 489999999999999999999876532 12456677777
Q ss_pred hhcCCcEEEEEEec
Q 035870 774 SVASRLCVEQVENI 787 (842)
Q Consensus 774 ~~~~gf~v~~~~~~ 787 (842)
.. .||++...+.-
T Consensus 174 ~~-~GF~~~~~d~~ 186 (219)
T PF05148_consen 174 KK-LGFKLKSKDES 186 (219)
T ss_dssp HC-TTEEEEEEE--
T ss_pred HH-CCCeEEecccC
Confidence 76 89998886543
No 312
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.63 E-value=5.8e-07 Score=101.84 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|+++..+ .|+.+..+++++ .|.+ +|+.+.++.||+|+..+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 468899999998889999876 788888766665 4544 566899999999987654
No 313
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.63 E-value=9.4e-07 Score=103.20 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCC--CcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPAD--KGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~--~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
...++..|++.++++|++|+.+++|++|..++ +++ .|+. .+|+ ++.||.||+|+.++.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56899999999999999999999999998863 443 3333 2343 589999999999874
No 314
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.63 E-value=5.6e-07 Score=101.34 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=47.8
Q ss_pred ecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeC--CCcE-EEEeC-CCcEEeCCEEEEccChH
Q 035870 210 VRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPA--DKGC-TIVCG-DGSREFYNSCVMALHAP 270 (842)
Q Consensus 210 ~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~v-~V~~~-~G~~~~ad~VV~A~p~~ 270 (842)
+.++...+++.|.+.+++.|++|+++++|++|..+ ++.+ .|.+. ++.++.|+.||+|+...
T Consensus 118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 34566789999999999999999999999999876 3444 34443 34578999999998743
No 315
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.3e-06 Score=78.92 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=85.9
Q ss_pred CCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
...-+||||||+|..+..+++. ++..+.++|+++.+++...+.++.++. ++..++.|...--..++.|+++-+...
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCc
Confidence 3668999999999999999988 567899999999999999998888765 578899997665534899999987532
Q ss_pred h---------------hc----ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 707 E---------------AV----GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 707 ~---------------~~----~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
. +. +.+-.+.++.++..+|.|.|.+++..+.
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 1 11 2334678888999999999999997654
No 316
>PRK06185 hypothetical protein; Provisional
Probab=98.62 E-value=6.2e-07 Score=100.48 Aligned_cols=60 Identities=27% Similarity=0.458 Sum_probs=45.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
.||+|||||++||++|+.|+++|++|+|+|+++...- +..+.. ..+...++++++|+...
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~------------~~r~~~----l~~~s~~~L~~lG~~~~ 66 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR------------DFRGDT----VHPSTLELMDELGLLER 66 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc------------cccCce----eChhHHHHHHHcCChhH
Confidence 4899999999999999999999999999999753210 000111 23467789999998644
No 317
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=4.8e-07 Score=105.87 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
.+.|.+.+++.|++|++++.|+++..++++| .|.. .+|+ .+.|+.||+||....
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 3667777777899999999999998876664 3433 2454 578999999998654
No 318
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.60 E-value=3.6e-07 Score=102.17 Aligned_cols=49 Identities=47% Similarity=0.767 Sum_probs=40.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCe-EEEEecCCCCCCCceeEeeCCeee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVTFDGVDL 49 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~-V~VlEa~~~~GG~~~s~~~~g~~~ 49 (842)
.||+|||||+|||++|++|+++|.+ ++||||++.+||.-+..+..+.+.
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~ 58 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRL 58 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEE
Confidence 4899999999999999999999998 999999999999544333333333
No 319
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.60 E-value=5.6e-07 Score=102.43 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|..+++++.|++.+|+++.+|.||+|+..
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC
Confidence 4677888889999999999999999999877778888888888999999999764
No 320
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.60 E-value=1.6e-06 Score=100.06 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=44.7
Q ss_pred cCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe-CCCc--EEeC-CEEEEccChH
Q 035870 211 RWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC-GDGS--REFY-NSCVMALHAP 270 (842)
Q Consensus 211 ~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~-~~G~--~~~a-d~VV~A~p~~ 270 (842)
.+| ..|+..|.+.+++.|++|+++++|+++..++++| .|.. .+|+ .+.+ +.||+|+...
T Consensus 214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 445 8899999999999999999999999998765554 3322 3443 3556 5899998765
No 321
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.60 E-value=2.3e-07 Score=106.83 Aligned_cols=53 Identities=19% Similarity=0.077 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.|.+.|++.+.. ..++++++|++|+.++++|.|++.+|+++.+|.||.|-..+
T Consensus 195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~ 247 (668)
T PLN02927 195 TLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIW 247 (668)
T ss_pred HHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCC
Confidence 566777776632 24788999999999999999999999899999999996543
No 322
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.60 E-value=4.3e-07 Score=94.01 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...+.+++.+...++++|||||||+|.++..++++ +.+|+++|+++.+++.++++... .++++++++|+.+.+..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 45567888888889999999999999999999998 56899999999999999988743 24899999999888732
Q ss_pred Ccc---EEEEcchh
Q 035870 696 KYD---RIISCEMI 706 (842)
Q Consensus 696 ~fD---~i~s~~~~ 706 (842)
+|| .|+++-.+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 566 88887653
No 323
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.60 E-value=2.1e-07 Score=104.86 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhcC---ceEEeCCCeeEEEeC-------CCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWG---CQIRTSSEVCSVLPA-------DKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G---~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+-+.|.+.+.+.+ ++++++++|++|+.+ ++++.|++.+|++++||.||.|-..
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~ 181 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGS 181 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCC
Confidence 45556666666654 899999999999753 4568999999999999999999543
No 324
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.59 E-value=3.4e-07 Score=93.42 Aligned_cols=210 Identities=18% Similarity=0.216 Sum_probs=119.6
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEee--CCeeeecceEeecCCCchhHHHHHHHcC--
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVTF--DGVDLDLGFMVFNRVTYPNMMEFFESLG-- 72 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~l~~~lG-- 72 (842)
|.+-|||+|+|||++|.+|.+. |.++.++|--+..||....... .|+.+.-|-..- ..+..+++|++.+-
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemE--nhfEc~WDlfrsIPSL 100 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREME--NHFECLWDLFRSIPSL 100 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHH--HHHHHHHHHHhcCccc
Confidence 5688999999999999999886 5699999999999997654332 566665544332 24566777777542
Q ss_pred -CCcc-------------cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 035870 73 -VDME-------------MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELES 138 (842)
Q Consensus 73 -l~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (842)
++.. +....+.+...+|+++.-.+...+.. ....++.++ ...
T Consensus 101 ei~naSvldEfy~~d~~dPn~s~cRli~k~g~rv~ddg~~tl~~--------------~~~~ei~kL----------~~t 156 (587)
T COG4716 101 EIPNASVLDEFYWLDKDDPNSSNCRLIHKRGRRVDDDGSFTLNN--------------KARKEIIKL----------LMT 156 (587)
T ss_pred cCCCcHHHHHHHhccCCCCCccceeeeeccccccccccccccCh--------------hhHHHHHHH----------HcC
Confidence 2111 11122233333444333322222211 111122211 111
Q ss_pred CCCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh--ccccccCCCCc-eEEecCChh
Q 035870 139 NPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN--HHLLQLFGRPQ-WLTVRWRSH 215 (842)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~gG~~ 215 (842)
.....++.++.+|+....+...|.-.+-..+.-.-|. |+..+.+|+.+ +++.++..-.. -++.-.-+.
T Consensus 157 ~EE~L~~~tI~d~Fse~FF~sNFW~yW~tmFAFekWh---------Sa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYe 227 (587)
T COG4716 157 PEEKLDDLTIEDWFSEDFFKSNFWYYWQTMFAFEKWH---------SAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYE 227 (587)
T ss_pred cHHhcCCccHHHhhhHhhhhhhHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHhcCCCcchhhcccccchHH
Confidence 1222378999999998877665543322222212232 44444444332 11111111111 122234577
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPAD 245 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~ 245 (842)
+++..|...|+++|+++.+++.|+.|+.+.
T Consensus 228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~ 257 (587)
T COG4716 228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDD 257 (587)
T ss_pred HHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence 999999999999999999999999998764
No 325
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.59 E-value=2.1e-06 Score=93.63 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQ 292 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~ 292 (842)
...++..|++.+.++|++++.+++|++|..++++| .|.+.+| ++.||.||+|+.++... +.+. + +. +
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~-l~~~-~-------~~--~ 203 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE-LLPL-P-------LR--P 203 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh-cccC-C-------cc--c
Confidence 57899999999999999999999999999988876 5777777 79999999999987543 3321 0 00 0
Q ss_pred eeeceEEEecCCC---CcCCCCCCcceeeecc-cCCCceEEEEEcc--ccc-CCCCC----CCCeEEecCCCCCCcceeE
Q 035870 293 YVYSDIFLHRDKR---FMPQNPAAWSAWNFLE-SFDSKVCLTYWLN--VLQ-NLGET----SLPFLVTLNPDHVPEHTLL 361 (842)
Q Consensus 293 ~~~~~v~l~~~~~---~~p~~~~~~~~~~~~~-~~~~~~~v~~~~~--~l~-~l~~~----~~~~~~~l~~~~~~~~~~~ 361 (842)
.....+.+..... -.|.....+....|.. .+++...+..... ... ..... +.+.+..+.|......+..
T Consensus 204 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~ 283 (337)
T TIGR02352 204 VRGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLE 283 (337)
T ss_pred cCceEEEeeccccccCCcccceEEEcCCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccCcHHH
Confidence 0001111111100 0010000011111211 1233333322111 000 00000 0111112223222223444
Q ss_pred EEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCC
Q 035870 362 KWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 362 ~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
.|...+|. +.+..+.+...+..+|+|++.++.|.|+ ..+...|+.+|+.|++.
T Consensus 284 ~~~g~r~~----t~D~~piig~~~~~~~~~~~~g~~g~G~-~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 284 TWAGLRPG----TPDNLPYIGEHPEDRRLLIATGHYRNGI-LLAPATAEVIADLILGK 336 (337)
T ss_pred heecCCCC----CCCCCCEeCccCCCCCEEEEcccccCce-ehhhHHHHHHHHHHhcC
Confidence 56554442 2234444444445689999999999999 89999999999999874
No 326
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.59 E-value=9.1e-07 Score=102.00 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-c---EEEE-----eCCC-cEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-G---CTIV-----CGDG-SREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~---v~V~-----~~~G-~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|++|+.++.|++|..+++ + +.+. ..++ ..+.|+.||+|+....
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46888999999888999999999999988754 3 3333 2233 3689999999987643
No 327
>PRK06116 glutathione reductase; Validated
Probab=98.59 E-value=6.5e-07 Score=101.45 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+.++++ +.|++.+|+++.||.||+|+..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 467788888899999999999999999987665 7888888988999999999753
No 328
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.59 E-value=4.3e-07 Score=100.72 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=93.4
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEE
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
++++|++|||++||.|+-+.++|+.. ...|+++|+++.-++..++++++.|+. +|.+.+.|...+. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 67899999999999999999999873 358999999999999999999999986 7999999988764 346899999
Q ss_pred E----c--chhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 702 S----C--EMIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 702 s----~--~~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
. + +|+..-++ +...+++..+.++|||||+++.++++...
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 4 2 23332221 12367899999999999999999888654
No 329
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.59 E-value=3.4e-07 Score=103.42 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|+++++++.|++|..+++++.|++.+|+++.+|.||+|++.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 4566777888888899999999999999877778888888888999999999864
No 330
>PLN02697 lycopene epsilon cyclase
Probab=98.58 E-value=5.7e-07 Score=101.86 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+.+.|.+.+.+.|+++ ++++|++|..+++++. +++.+|.++.|+.||.|.....
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 56667777777779998 7889999998888765 4567888899999999988765
No 331
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.58 E-value=4.3e-07 Score=105.67 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe--CCCc-EEeCC-EEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC--GDGS-REFYN-SCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G~-~~~ad-~VV~A~p~~ 270 (842)
..+++.|.+.+++.|++|+++++|++|..++++| .|.. .+++ .+.++ .||+|+...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGF 274 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCc
Confidence 5788899999999999999999999999887754 3433 3443 46775 799998755
No 332
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.57 E-value=2.8e-07 Score=89.46 Aligned_cols=122 Identities=18% Similarity=0.337 Sum_probs=92.5
Q ss_pred HHHHHHHcCCCC-CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 618 VSLLIEKARVSK-GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 618 ~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
++.+++.+...| ...|-|+|||-+.++. .. -.+|+.+|+-+ + +-+++.+|++++| +++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-----~-----------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-----V-----------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec-----C-----------CCceeeccccCCcCccC
Confidence 566777766544 4578999999998875 22 35799999853 1 3467899999999 889
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhh
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
+.|++|.+.++ ++. ++..++.+++|+|||||.++|..+.. .+++...+..++..
T Consensus 228 svDvaV~CLSL--Mgt-n~~df~kEa~RiLk~gG~l~IAEv~S-----------------------Rf~dv~~f~r~l~~ 281 (325)
T KOG3045|consen 228 SVDVAVFCLSL--MGT-NLADFIKEANRILKPGGLLYIAEVKS-----------------------RFSDVKGFVRALTK 281 (325)
T ss_pred cccEEEeeHhh--hcc-cHHHHHHHHHHHhccCceEEEEehhh-----------------------hcccHHHHHHHHHH
Confidence 99999986544 442 48999999999999999999977643 22456667778887
Q ss_pred cCCcEEEEEEe
Q 035870 776 ASRLCVEQVEN 786 (842)
Q Consensus 776 ~~gf~v~~~~~ 786 (842)
.||++.+...
T Consensus 282 -lGF~~~~~d~ 291 (325)
T KOG3045|consen 282 -LGFDVKHKDV 291 (325)
T ss_pred -cCCeeeehhh
Confidence 8999877554
No 333
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.57 E-value=3.5e-07 Score=99.30 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=82.9
Q ss_pred CCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-CCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-ANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~fD~i~s~~~~ 706 (842)
++.+|||++||+|.+++.++.+.+ .+|+++|+++++++.++++++.+++. ++++.++|+..+.. .++||+|+....
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~- 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF- 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-
Confidence 357999999999999999988744 48999999999999999999999986 67899999877543 467999999753
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+. ...++....+.+++||.++++
T Consensus 135 ---Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 33 457777767778999999997
No 334
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.57 E-value=4.2e-07 Score=93.66 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=81.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc----cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA----KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~----~~~~fD~i~ 701 (842)
..+.+|||+-|=+|+++.+++.. |+ +|+.||.|..+++.++++++.+|++ ++++++..|+.+.- ..++||+||
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 35889999999999999998876 54 8999999999999999999999986 68999999976532 357999999
Q ss_pred EcchhhhcC----hhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 702 SCEMIEAVG----HEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 702 s~~~~~~~~----~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+-..-..=+ ...+..++..+.++|+|||.+++.+.+
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 864311100 134778899999999999999876654
No 335
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.57 E-value=4.3e-07 Score=104.30 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+.+++.|++++++++|++|..+++.+.|++.+|+++.||.||+|+...
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 334455555566899999999999998877788888888889999999999864
No 336
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5e-07 Score=85.32 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=86.2
Q ss_pred HHHHHHHHcC--CCCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCCeE
Q 035870 617 KVSLLIEKAR--VSKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAG--------L-QDLIR 682 (842)
Q Consensus 617 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~--------l-~~~v~ 682 (842)
....+++.|. ++||.+.||+|+|+|.++..++.. .|..++|||.-++.++++++++...- + ..++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3345666666 789999999999999999888866 34456999999999999999987543 1 23678
Q ss_pred EEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 683 LYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 683 ~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
++.+|.+... +..+||.|.+-.. -...-+++-..|+|||++++-..
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEeCCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEeec
Confidence 9999998877 6689999987532 23444556667999999998443
No 337
>PRK11445 putative oxidoreductase; Provisional
Probab=98.56 E-value=1.2e-06 Score=95.68 Aligned_cols=61 Identities=28% Similarity=0.385 Sum_probs=44.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
.||+|||||+|||++|+.|+++ ++|+|+|+++..+-. |.....|. ...++..+.++++|+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~-------~~~~~~g~-----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTE-------GFSKPCGG-----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccc-------cccCcCcC-----ccCHHHHHHHHHcCCC
Confidence 4899999999999999999999 999999998764310 00000111 1346788899999985
No 338
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=6.9e-07 Score=103.91 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EE---EeCCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TI---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
-..+.+.|.+.+++.|++|+.++.|+++..++++| .| ...+|+ .+.|+.||+|+....
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 35788899998888899999999999998766654 22 334564 589999999987653
No 339
>PLN02823 spermine synthase
Probab=98.55 E-value=3.8e-07 Score=96.87 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=82.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
+...+||.||+|.|..+..+.+.. ..+|+.+|+++++++.|++.+...+ + .++++++.+|.++.- ..++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 345799999999999999998863 4689999999999999999875432 2 358999999987754 447899999
Q ss_pred Ecchhhhc----Ch-hhHHHHHH-HHHhccccCcEEEEEee
Q 035870 702 SCEMIEAV----GH-EFMEEFFG-CCESLLAEDGLLVLQFI 736 (842)
Q Consensus 702 s~~~~~~~----~~-~~~~~~~~-~~~~~LkpgG~~~~~~~ 736 (842)
+-.. ... +. =+-.++++ .+++.|+|||.++++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8621 110 00 01357887 89999999999988643
No 340
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.55 E-value=1e-06 Score=97.55 Aligned_cols=58 Identities=17% Similarity=0.045 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC---Cc--EEeCCEEEEccChHHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD---GS--REFYNSCVMALHAPDA 272 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VV~A~p~~~~ 272 (842)
.+|+-..+..+.++|++|...++|+++.++++-+.|...| |+ ++.|+.||.|+.+|.-
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 4788888888888999999999999999999844566554 33 5899999999998854
No 341
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.1e-06 Score=102.95 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=33.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 899999999999999999999999999999876555
No 342
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.55 E-value=2.7e-07 Score=89.53 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=83.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s 702 (842)
-+|.++||+-||+|.+++.+..+...+|+.||.|+..++..+++++..++.++++++..|+...- ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 37889999999999999999998556999999999999999999999999878999999954322 3589999999
Q ss_pred cchhhhcChhhHHHHHHHHH--hccccCcEEEEEeecC
Q 035870 703 CEMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQFISI 738 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~~~~ 738 (842)
......-.. ....+..+. .+|+++|.+++.....
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 877664321 367777776 8999999999976443
No 343
>PRK06996 hypothetical protein; Provisional
Probab=98.55 E-value=1e-06 Score=98.28 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccCh--HHHHHhh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHA--PDALKIL 276 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~--~~~~~ll 276 (842)
.+-+.|.+.+++.|++++.+++|++|+.++++|.|+..+| ++++||.||-|-.. ..+.+.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 5677788888888999999999999999999999888754 58999999999552 3344443
No 344
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.53 E-value=2.6e-06 Score=99.20 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE---EEEeCCCc-EEeC-CEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC---TIVCGDGS-REFY-NSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v---~V~~~~G~-~~~a-d~VV~A~p~~~ 271 (842)
..++..|.+.+++.|++|+++++|++|..++++| .+.+.++. ++.| +.||+|+..+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 5688999999999999999999999998876654 33334443 4788 99999987663
No 345
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.53 E-value=9.9e-07 Score=103.47 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE---EEEe-CCCc--EEeCCEEEEccChHH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC---TIVC-GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v---~V~~-~~G~--~~~ad~VV~A~p~~~ 271 (842)
....+...|.+.+.+.|++|+.+++|++|..+++++ .+.. .+|+ .+.|+.||+||....
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 345677888888888899999999999999877653 3433 4665 467999999998654
No 346
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.53 E-value=1.2e-06 Score=98.01 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcE-EEE-eCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGC-TIV-CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V~-~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+++.|.+.+++ .|++|+++++|++|..+++++ .|. +.+|+ ++.|+.||+|+...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4688888888765 489999999999998776654 322 33444 58999999999763
No 347
>PRK04148 hypothetical protein; Provisional
Probab=98.53 E-value=1e-06 Score=79.22 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=74.8
Q ss_pred HHHHHcCCCCCCeEEEeccCchH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGT-LAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANK 696 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~-~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~ 696 (842)
.+.+.+....+.++||||||.|. ++..+++. |.+|+++|+|+..++.++++ .++++..|..+.. .-+.
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhc
Confidence 45555555567899999999996 88888876 89999999999988888766 3689999988776 3478
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+|+|.|+..-. ++...+.++.+. -|.-+++...+.
T Consensus 78 a~liysirpp~-----el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 78 AKLIYSIRPPR-----DLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred CCEEEEeCCCH-----HHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 99999975421 234444444443 355677755543
No 348
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.53 E-value=1.7e-06 Score=89.40 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=117.9
Q ss_pred CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhc
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAV 709 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~ 709 (842)
-...+|+|.|.|..+..+..+ -.+|-+++.....+-.+...+. . .|+.+-+|..+-.| +-|+|+..++++|.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDTP--KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C----CcceecccccccCC--CcCeEEEEeecccC
Confidence 378999999999999999986 3468999998888877777664 3 37888888544332 44799999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEEeecCCC-ccccc----ccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEE
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQFISIPD-ERYNE----YRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~-~~~~~----~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
+|++...+|++++..|+|||.+++.+...+. ..... .....+.....+.++|.--+..+....+.+ +||.+..+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~-~gF~~~~~ 328 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPE-EGFPVCMV 328 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchh-hcCceeEE
Confidence 9999999999999999999999998876664 22221 122333444455577777788888777666 89998887
Q ss_pred EecCccHHH
Q 035870 785 ENIGIHYYQ 793 (842)
Q Consensus 785 ~~~~~~y~~ 793 (842)
.....+|..
T Consensus 329 ~~~~~~~~~ 337 (342)
T KOG3178|consen 329 ALTAYSYSV 337 (342)
T ss_pred EeccCccch
Confidence 776666543
No 349
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.52 E-value=1.4e-06 Score=99.19 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+.+++++.|.+.+| +++.+|.||+|+..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 46777888888889999999999999998777787877666 67999999999864
No 350
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.50 E-value=5.8e-07 Score=101.76 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=88.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISC 703 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~ 703 (842)
..+..+||||||.|.+...+|+. +...++|+|++..-+..+.+++...++. |+.++..|+..+. +++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 34668999999999999999988 8899999999999999999999888886 8999988876544 56889999998
Q ss_pred chhhhcChh------hHHHHHHHHHhccccCcEEEEE
Q 035870 704 EMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 704 ~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+.=-|.... --+.+++.++++|||||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 765443221 1378999999999999999984
No 351
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5.4e-07 Score=90.62 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
+.++.+++.+++.+++.|||||+|.|.++..++++ +.+|+++++++.+++..+++... .++++++++|+...+...
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchh
Confidence 45678999999999999999999999999999998 88999999999999999998752 348999999998887333
Q ss_pred --CccEEEEcch
Q 035870 696 --KYDRIISCEM 705 (842)
Q Consensus 696 --~fD~i~s~~~ 705 (842)
.++.|++|-.
T Consensus 93 l~~~~~vVaNlP 104 (259)
T COG0030 93 LAQPYKVVANLP 104 (259)
T ss_pred hcCCCEEEEcCC
Confidence 7899999854
No 352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.49 E-value=1e-06 Score=89.84 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=92.8
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCch----HHHHHHHHhc------CCEEEEEcCCHHHHHHHHHHH-----
Q 035870 608 EDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWG----TLAIEIVKRT------GCKYTGITLSEEQLKYAEMKV----- 672 (842)
Q Consensus 608 ~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G----~~~~~la~~~------~~~v~gid~s~~~~~~a~~~~----- 672 (842)
..++.-....+..++..... ..-+|+-+||++| .+++.+.+.. ..+|+|+|+|...++.|+.-+
T Consensus 76 ~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~ 154 (268)
T COG1352 76 EHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRE 154 (268)
T ss_pred HHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhH
Confidence 34555444444444443322 4679999999999 4555555553 479999999999999998621
Q ss_pred HHcCCC-----------------------CCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC
Q 035870 673 KEAGLQ-----------------------DLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 673 ~~~~l~-----------------------~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
...+++ ..|.|...|..+-+ ..+.||+|+|-.++-++..+...++++.++..|+||
T Consensus 155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 155 LLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred hhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 112222 35777777766555 567899999999999999988999999999999999
Q ss_pred cEEEE
Q 035870 729 GLLVL 733 (842)
Q Consensus 729 G~~~~ 733 (842)
|++++
T Consensus 235 G~Lfl 239 (268)
T COG1352 235 GLLFL 239 (268)
T ss_pred CEEEE
Confidence 99999
No 353
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=1.7e-06 Score=100.31 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..++..|.+.+.+.|++|+.++.++++..++++| .|.. .+|+ .+.|+.||+||....
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4688889888887899999999999999876664 3433 2343 578999999998654
No 354
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.48 E-value=9.1e-07 Score=101.78 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+.+++.|++++++++|++|...++.+.|.+.+|+++.||.||+|+...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 344455556666899999999999999888888988888889999999999863
No 355
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.48 E-value=2.5e-06 Score=97.38 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEE-EEeCC-C--cEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGCT-IVCGD-G--SREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~-V~~~~-G--~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++ .|++|+.++.|++|..+++++. |.+.+ + ..+.|+.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688889888887 5899999999999988766543 44332 3 3689999999988654
No 356
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.46 E-value=3.5e-06 Score=97.65 Aligned_cols=38 Identities=50% Similarity=0.824 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC--CCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD--YLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~--~~GG~~ 39 (842)
||+|||+|.|||+||..++++|.+|+||||.+ ..||.+
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 89999999999999999999999999999999 788854
No 357
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.46 E-value=5.9e-07 Score=90.77 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=93.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC-------------C--------------CC
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL-------------Q--------------DL 680 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l-------------~--------------~~ 680 (842)
..|.++||||||.-..-...|...-.+++..|.++...+..++-++..+- + ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35789999999985553333333345899999999998877765544221 0 12
Q ss_pred e-EEEEccccCCc---c----CCCccEEEEcchhhhcCh--hhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCcc
Q 035870 681 I-RLYLCDYRQLA---K----ANKYDRIISCEMIEAVGH--EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSS 750 (842)
Q Consensus 681 v-~~~~~d~~~~~---~----~~~fD~i~s~~~~~~~~~--~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 750 (842)
| .++.+|+.+.+ + .++||+|+|..++|.+.. +.+...++++.++|||||.|++....... .|..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-~Y~v----- 208 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-YYMV----- 208 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S-EEEE-----
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce-eEEE-----
Confidence 4 47788987655 2 135999999999998853 35788899999999999999997664322 2211
Q ss_pred chhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEE
Q 035870 751 DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 751 ~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
-..-||. ...+.+.+.+++++ +||.+++.+
T Consensus 209 ---G~~~F~~-l~l~ee~v~~al~~-aG~~i~~~~ 238 (256)
T PF01234_consen 209 ---GGHKFPC-LPLNEEFVREALEE-AGFDIEDLE 238 (256)
T ss_dssp ---TTEEEE----B-HHHHHHHHHH-TTEEEEEEE
T ss_pred ---CCEeccc-ccCCHHHHHHHHHH-cCCEEEecc
Confidence 1122332 12366777788887 899999887
No 358
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.46 E-value=4.3e-06 Score=97.65 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEe-CCCcE-EEE---eCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLP-ADKGC-TIV---CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~-~~~~v-~V~---~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+...|.+.+++.|++|+.++.|+++.. ++++| .|. ..+|+ .+.|+.||+||...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 47888999988888999999999999887 45544 332 24564 57899999999764
No 359
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.46 E-value=1.4e-06 Score=94.14 Aligned_cols=109 Identities=11% Similarity=0.201 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc---
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK--- 693 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~--- 693 (842)
.++.+++.+...+ .+|||++||+|.+++.+++. ..+|+|+|+|+++++.|+++++.+++. +++++.+|+.++..
T Consensus 186 l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~ 262 (353)
T TIGR02143 186 MLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMN 262 (353)
T ss_pred HHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHh
Confidence 3345555554333 47999999999999999987 469999999999999999999999986 79999999876431
Q ss_pred --------C------CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 694 --------A------NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 --------~------~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. ..||+|+.... . -+- .+.+++.+.+ |++.++++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~--~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 263 GVREFRRLKGIDLKSYNCSTIFVDPP-R-AGL--DPDTCKLVQA---YERILYISC 311 (353)
T ss_pred hccccccccccccccCCCCEEEECCC-C-CCC--cHHHHHHHHc---CCcEEEEEc
Confidence 0 13899998766 1 221 3455555544 788888743
No 360
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=2.5e-06 Score=98.75 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-E-EEE--e-CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-C-TIV--C-GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~--~-~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+++.|++|++++.|+++..++++ | .|. . .+|+ .+.|+.||+||....
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 468888888888889999999999999887664 4 332 2 4564 589999999987653
No 361
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.45 E-value=1.7e-06 Score=95.21 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.+.+.+. .++.+++++.|++|+.+++.+.|++++|++++|+.||-|.+..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 45555666666 4667889999999999999899999999999999999998743
No 362
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.45 E-value=3e-06 Score=95.70 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCC-cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDG-SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|+++++++.|++|..++++ +.|++.+| +++.+|.||++++.
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 457778888888899999999999999876554 67777777 57999999999863
No 363
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.44 E-value=2.5e-06 Score=99.26 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=32.3
Q ss_pred EEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 3 V~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
|+|||||+|||+||..+++.|.+|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999885654
No 364
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.43 E-value=2.9e-06 Score=97.67 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCC--CcE-EEEe-CCCc--EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPAD--KGC-TIVC-GDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~--~~v-~V~~-~~G~--~~~ad~VV~A~p~~ 270 (842)
-..+++.|.+.+.++ |++|++++.|+++..++ ++| .|.. .+|+ .+.|+.||+||...
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 356888898888654 89999999999998764 333 3322 3554 37899999999864
No 365
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.43 E-value=4.1e-06 Score=94.62 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+.+++++.+++ +|+++.+|.||+|+..
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 35666677778888999999999999988776676665 4668999999999753
No 366
>PRK12839 hypothetical protein; Provisional
Probab=98.43 E-value=6.6e-06 Score=95.21 Aligned_cols=39 Identities=36% Similarity=0.559 Sum_probs=36.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||+|||+|++||+||+.|++.|.+|+|+|+...+||.+.
T Consensus 10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 799999999999999999999999999999999999653
No 367
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=4.2e-06 Score=97.30 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
-..+...|.+.+.+.|++|++++.|+++..+ +++| .|. ..+|+ .+.|+.||+||....
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3568889998888889999999999999885 4444 333 23564 478999999997654
No 368
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.42 E-value=5e-06 Score=97.05 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcE-EE---EeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGC-TI---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.++++| ++|+.+++|++|..++++| .| .+.+|+ .+.|+.||+|+....
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357777877777766 9999999999998766654 23 234554 589999999998764
No 369
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=5.1e-06 Score=96.14 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe-CCCc--EEeCC-EEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC-GDGS--REFYN-SCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~-~~G~--~~~ad-~VV~A~p~~ 270 (842)
..++..|.+.+++.|++|+++++|++|..++++| .|.. .+|+ ++.|+ .||+|+...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~ 268 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGF 268 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCc
Confidence 5688899999999999999999999999877664 3333 2454 46785 799998754
No 370
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=3.4e-06 Score=98.27 Aligned_cols=57 Identities=7% Similarity=-0.047 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcE-EE---EeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGC-TI---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+++.|.+.+.+ .|++|+.++.|+++..+++++ .| ...+|+ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4578888887765 589999999999998776654 22 234664 579999999998653
No 371
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=1e-06 Score=92.28 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=92.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC-CCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA-NKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~fD~i~s~~~~ 706 (842)
.+|.+|||.-||-|.+++.+|+....+|+++|++|..+++.+++++.|++.+.+..+++|.++..+. +.+|.|+++..-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4699999999999999999999833349999999999999999999999998899999999999844 889999987542
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
. -..++....+.+|+||.+..+.+...+.
T Consensus 267 ~------a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 S------AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred c------chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 1 3566777788888899999988776554
No 372
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.42 E-value=2.2e-06 Score=93.13 Aligned_cols=108 Identities=12% Similarity=0.256 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
.++.+.+.+... +.+|||++||+|.+++.+++. ..+|+++|+|+.+++.|++++..+++. +++++.+|+.+..
T Consensus 195 l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 195 MLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMN 271 (362)
T ss_pred HHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHh
Confidence 334444444432 357999999999999999887 569999999999999999999999986 8999999986632
Q ss_pred c-------------CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 K-------------ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 ~-------------~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
. ..+||+|+....-. +- .+..++.+.+ |++.++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~--~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPPRA--GL--DDETLKLVQA---YERILYIS 319 (362)
T ss_pred hcccccccccccccCCCCCEEEECCCCC--CC--cHHHHHHHHc---cCCEEEEE
Confidence 0 12589999977632 21 3455555544 67777774
No 373
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.42 E-value=4.2e-06 Score=95.84 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE-EEEeC-CCc--EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC-TIVCG-DGS--REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~-~G~--~~~ad~VV~A~p~~ 270 (842)
...+++.|.+.+++. |++|+.+++|++|..++++| .|... +++ .+.|+.||+|+...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 356888998888765 89999999999998766654 33332 232 58999999998764
No 374
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.41 E-value=1.8e-06 Score=86.47 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCC-CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCe-EEEEccccCCc-
Q 035870 616 RKVSLLIEKARV-SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLI-RLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v-~~~~~d~~~~~- 692 (842)
.++..+++..++ .++.+|||+|||+|.++..+++....+|+++|+|++|+... +.+. .++ .+...|++.+.
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCCH
Confidence 466677777765 47889999999999999999998445899999999888761 1111 133 24444555433
Q ss_pred -----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 693 -----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 693 -----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
.-..||+++++. ...+..+.++|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE
Confidence 113567666542 3357789999999 77665
No 375
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.41 E-value=2.8e-06 Score=96.01 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|..+++++.|.+.+| ++.+|.||+|+..
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 46778888899999999999999999998777788877666 5899999999753
No 376
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.40 E-value=3.9e-06 Score=97.48 Aligned_cols=37 Identities=32% Similarity=0.587 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||++||+||+.++++|.+|+||||....||.
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 8999999999999999999999999999999988883
No 377
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.40 E-value=3e-06 Score=95.18 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+-|.+.+.++|++++.++ |+.+..++++ ..|++.+|++++||.||=|+...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 666777888888899998884 8888887766 37999999999999999998764
No 378
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.40 E-value=6.8e-06 Score=95.99 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+++.|.+.+.+.|++|+.++.++++..+ +++| .|.. .+|+ .+.|+.||+|+....
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 468888988888889999999999998876 4544 3332 3564 578999999998654
No 379
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.40 E-value=9.7e-06 Score=82.48 Aligned_cols=142 Identities=21% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH----------------------------------
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKE---------------------------------- 674 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~---------------------------------- 674 (842)
...+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4579999999999999999998 89999999999996544432221
Q ss_pred -----cCCCCCeEEEEccccCCc-c---CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc
Q 035870 675 -----AGLQDLIRLYLCDYRQLA-K---ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE 745 (842)
Q Consensus 675 -----~~l~~~v~~~~~d~~~~~-~---~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~ 745 (842)
.....++....+|+.+.. + .++||+|++++.+....+ ..+|++.|.++|||||..+-.. .-.|..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N--i~~Yi~tI~~lLkpgG~WIN~G----PLlyh~ 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN--IIEYIETIEHLLKPGGYWINFG----PLLYHF 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH--HHHHHHHHHHHhccCCEEEecC----CccccC
Confidence 000135677777877765 3 379999999988887644 9999999999999999666421 111111
Q ss_pred ccCccchhhhcccCC--CCCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 746 YRLSSDFIKEYIFPG--GCLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 746 ~~~~~~~~~~~i~p~--~~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
... . .|+ ..-.+.+|+...+.+ .||+++..+.
T Consensus 209 ~~~-------~-~~~~~sveLs~eEi~~l~~~-~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPM-------S-IPNEMSVELSLEEIKELIEK-LGFEIEKEES 242 (270)
T ss_pred CCC-------C-CCCCcccCCCHHHHHHHHHH-CCCEEEEEEE
Confidence 000 0 011 123588999888776 8999987666
No 380
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.39 E-value=1.1e-06 Score=94.27 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccCh
Q 035870 217 YVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 217 l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.+.+.+.+++. +.+| ...+|+.|..++++| .|.+.+|+.+.+|.||+|+..
T Consensus 97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 444455555553 5677 467999999988885 799999999999999999987
No 381
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=2.4e-06 Score=88.03 Aligned_cols=114 Identities=27% Similarity=0.332 Sum_probs=87.7
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--c
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--K 693 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~ 693 (842)
++.-..+..| .+||-||.|.|+.+..+.++. -.+++.+||+++.++.+++.+.... . .+|++++..|..+.- .
T Consensus 68 h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 68 HVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 3333334445 699999999999999999983 4699999999999999999876543 2 368999999976665 2
Q ss_pred CCCccEEEEcchhhhcCh-h--hHHHHHHHHHhccccCcEEEEEe
Q 035870 694 ANKYDRIISCEMIEAVGH-E--FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~-~--~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..+||+|++...=. ++. + .-.++++.+++.|+|+|.++.+.
T Consensus 147 ~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 147 EEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 34899999854322 221 0 12789999999999999999983
No 382
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.39 E-value=9.1e-07 Score=91.71 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
++.+++.+.+.++..+||.+||.|+.+..+++.. .++|+|+|.++++++.|++++.. .++++++++|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 4578888888999999999999999999999984 47999999999999999998865 358999999999876
Q ss_pred cCC--CccEEEEcc
Q 035870 693 KAN--KYDRIISCE 704 (842)
Q Consensus 693 ~~~--~fD~i~s~~ 704 (842)
+.+ ++|.|+...
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 222 799999864
No 383
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.38 E-value=1.4e-06 Score=85.76 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
.++.|+++..+++++.|||||.|||.++..+.+. +.+|+++++++.|+...+++.+....+.+.+++++|+...+. ..
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~ 123 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PR 123 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cc
Confidence 3467889999999999999999999999999998 999999999999999999999876666899999999887762 37
Q ss_pred ccEEEEcc
Q 035870 697 YDRIISCE 704 (842)
Q Consensus 697 fD~i~s~~ 704 (842)
||.+|++-
T Consensus 124 fd~cVsNl 131 (315)
T KOG0820|consen 124 FDGCVSNL 131 (315)
T ss_pred cceeeccC
Confidence 99999964
No 384
>PLN02985 squalene monooxygenase
Probab=98.38 E-value=5.2e-06 Score=94.74 Aligned_cols=61 Identities=30% Similarity=0.419 Sum_probs=45.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++|+++|+.|+++|++|+|+|+......+. .| .. ..++-.+.++++|+....
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~-----------~g-~~----L~p~g~~~L~~LGl~d~l 104 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM-----------MG-EF----MQPGGRFMLSKLGLEDCL 104 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc-----------cc-cc----cCchHHHHHHHcCCcchh
Confidence 389999999999999999999999999999975321111 01 11 234567788999987554
No 385
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.38 E-value=3.4e-06 Score=81.51 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=81.6
Q ss_pred eEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcC
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVG 710 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~ 710 (842)
+++|||+|-|--++.+|-. +..+++.+|.+..-+...+.-+...+++ |+++++..+++.....+||.|+|..+ .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv----~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAV----A 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehh----c
Confidence 8999999999888887765 7889999999999999999999999997 89999999999335589999999754 3
Q ss_pred hhhHHHHHHHHHhccccCcEEEEE
Q 035870 711 HEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 711 ~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+ +..++.-+..+|++||++++.
T Consensus 126 ~--l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 P--LDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp S--HHHHHHHHGGGEEEEEEEEEE
T ss_pred C--HHHHHHHHHHhcCCCCEEEEE
Confidence 3 788999999999999998883
No 386
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.38 E-value=1.4e-06 Score=91.49 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~ 35 (842)
+||||||||+||++|..|+++|++|+|||++..+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 7999999999999999999999999999997654
No 387
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=7.3e-06 Score=95.56 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+++.|++|.+++.|+++..++ ++| .|. ..+|+ .+.|+.||+||....
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688899998888899999999999998875 444 333 34665 578999999997654
No 388
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.37 E-value=7.1e-06 Score=94.16 Aligned_cols=37 Identities=41% Similarity=0.707 Sum_probs=34.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+||||| +||+||+++++.|.+|+|||+....||.+
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 89999999 99999999999999999999998888843
No 389
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.37 E-value=5.7e-06 Score=87.06 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=99.7
Q ss_pred hhc-CChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-----CC
Q 035870 580 HYD-LSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-----GC 653 (842)
Q Consensus 580 ~Yd-~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-----~~ 653 (842)
.|| .+.+.|+..- ..+.||....+ .+.-.+....|.+.+ .++..|+|+|||.|.-+..+.+.. ..
T Consensus 35 ~YD~~Gs~LFe~It-----~lpEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~ 105 (319)
T TIGR03439 35 LYDDEGLKLFEEIT-----YSPEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSV 105 (319)
T ss_pred hhcchHHHHHHHHH-----cCCccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCc
Confidence 344 3455555433 23455544322 122223344555554 467799999999998877665541 46
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEE--EEccccCC----cc---CCCccEEEEcc-hhhhcChhhHHHHHHHHHh
Q 035870 654 KYTGITLSEEQLKYAEMKVKEAGLQDLIRL--YLCDYRQL----AK---ANKYDRIISCE-MIEAVGHEFMEEFFGCCES 723 (842)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~--~~~d~~~~----~~---~~~fD~i~s~~-~~~~~~~~~~~~~~~~~~~ 723 (842)
+++++|+|.++++.+.+++.....+ .+++ +++||.+. +. .....+++..+ +|..+..+....+++++++
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 8999999999999999999844443 4544 89998653 21 23467777665 8888888888899999999
Q ss_pred -ccccCcEEEEE
Q 035870 724 -LLAEDGLLVLQ 734 (842)
Q Consensus 724 -~LkpgG~~~~~ 734 (842)
.|+|||.+++.
T Consensus 185 ~~l~~~d~lLiG 196 (319)
T TIGR03439 185 TALSPSDSFLIG 196 (319)
T ss_pred hhCCCCCEEEEe
Confidence 99999999984
No 390
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=5.8e-06 Score=78.60 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=90.4
Q ss_pred HHHHHHcCC--CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 619 SLLIEKARV--SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 619 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
+.+...+.. -.|.++||+-+|+|.+++.++.+...+++.||.|...+...+++++..++..+++++..|.....
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG 110 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence 344455543 47899999999999999999999667999999999999999999999998889999999977442
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHH--HHhccccCcEEEEEee
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGC--CESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~--~~~~LkpgG~~~~~~~ 736 (842)
..++||+|+.-..++. +--.....+.. -..+|+|+|.+++..-
T Consensus 111 ~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 111 TREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2235999999888772 11001222333 4588999999999654
No 391
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=5.1e-06 Score=87.57 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=94.8
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-----------------------------------------EEE
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-----------------------------------------KYT 656 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-----------------------------------------~v~ 656 (842)
...|+...+.+++..++|-=||+|.+++.+|.. +. .++
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 346677778888999999999999999999976 21 377
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC-CCccEEEEcchh-hhcChh-----hHHHHHHHHHhccccCc
Q 035870 657 GITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA-NKYDRIISCEMI-EAVGHE-----FMEEFFGCCESLLAEDG 729 (842)
Q Consensus 657 gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~fD~i~s~~~~-~~~~~~-----~~~~~~~~~~~~LkpgG 729 (842)
|+|+++.+++.|+.|++++|+.+.|+|.++|+.++.+. +.+|+||||... +-++++ -+..+.+.+++.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999844 899999999653 222222 35666777778888777
Q ss_pred EEEEE
Q 035870 730 LLVLQ 734 (842)
Q Consensus 730 ~~~~~ 734 (842)
++++.
T Consensus 339 ~~v~t 343 (381)
T COG0116 339 RYVFT 343 (381)
T ss_pred eEEEE
Confidence 88774
No 392
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.36 E-value=6.6e-06 Score=95.27 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||+|++||+||+.++++|.+|+|||+...+||.+
T Consensus 9 DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 9 DVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 89999999999999999999999999999999888843
No 393
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=7e-07 Score=78.73 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=67.6
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEc
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISC 703 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~ 703 (842)
.+--.|++++|+|||.|-+.+..+--....|.|+||++++++.+++++++..+ ++.+.++|+.++. ..+.||.++.+
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEec
Confidence 33346889999999999999655443345799999999999999999998877 5799999999987 56899999999
Q ss_pred chhh
Q 035870 704 EMIE 707 (842)
Q Consensus 704 ~~~~ 707 (842)
..+.
T Consensus 122 ppFG 125 (185)
T KOG3420|consen 122 PPFG 125 (185)
T ss_pred CCCC
Confidence 8764
No 394
>PTZ00367 squalene epoxidase; Provisional
Probab=98.35 E-value=4.7e-06 Score=95.58 Aligned_cols=61 Identities=26% Similarity=0.426 Sum_probs=45.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC-CCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY-LGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~-~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++|+++|+.|+++|++|+|+|+... .-.+. .|. .-.++..+.++++|+....
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~-----------~G~-----~L~p~g~~~L~~LGL~d~l 95 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRI-----------VGE-----LLQPGGVNALKELGMEECA 95 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchh-----------hhh-----hcCHHHHHHHHHCCChhhH
Confidence 3899999999999999999999999999999651 00000 111 1346778999999987544
No 395
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=4e-06 Score=81.11 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.++.+++.+ ..+++||||.=||.-+...|.. .+.+|+++|++++..+.+.+..+.+|+.++|++++++..+.-
T Consensus 64 fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 344444444 5679999998888888777776 578999999999999999999999999999999999965432
Q ss_pred -----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 693 -----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 693 -----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+.+.||.++. .|-.+. +..++.++-++||+||.+++.....+.
T Consensus 141 l~~~~~~~tfDfaFv----DadK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 141 LLADGESGTFDFAFV----DADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHhcCCCCceeEEEE----ccchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 4589999985 455444 458999999999999999997654444
No 396
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.35 E-value=1e-05 Score=99.72 Aligned_cols=41 Identities=37% Similarity=0.571 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s 41 (842)
+||+|||||+|||+||..|++.|++|+|+|+++.+||.+..
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 48999999999999999999999999999999999997753
No 397
>PRK06370 mercuric reductase; Validated
Probab=98.34 E-value=7.4e-07 Score=101.35 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe--C-CCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC--G-DGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~--~-~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++|+++++|.+|+.+++++.|.+ . +++++.+|.||+|+..
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 35667788888889999999999999998776654443 2 3457999999999863
No 398
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.34 E-value=6.4e-06 Score=95.82 Aligned_cols=40 Identities=43% Similarity=0.751 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
.||+|||+|.+||+||+.++++|.+|+|+|+.+.+||.+.
T Consensus 17 ~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 3899999999999999999999999999999999999554
No 399
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.34 E-value=7.3e-06 Score=95.26 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEE----EEeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCT----IVCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~----V~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+.+. +++++.++.|+++..+++++. +...+|+ .+.|+.||+|+....
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 45777888777664 789999999999998776642 2335664 689999999987543
No 400
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.34 E-value=1.3e-05 Score=93.27 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+.+.|++|+.++.|+++..++ ++| .|.. .+|+ .+.|+.||+|+....
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 4688888888888899999999999998764 443 3332 3554 578999999987654
No 401
>PRK08275 putative oxidoreductase; Provisional
Probab=98.34 E-value=5.2e-06 Score=96.28 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEE---eCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIV---CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++.|++|+.++.|++|..+ ++++ .|. ..+|+ .+.|+.||+|+...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 467888888888889999999999999886 4443 332 34564 47899999999865
No 402
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.4e-05 Score=86.35 Aligned_cols=120 Identities=23% Similarity=0.294 Sum_probs=96.5
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhc---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---c-
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRT---GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---K- 693 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~---~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~- 693 (842)
....|+.+||++|||+.++-|+=+.++|+.. +..|+++|.|+.=++..++++++.|+. ++.+.+.|.+.++ .
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccc
Confidence 3467888999999999999999999999882 456899999999999999999999997 5889999977654 2
Q ss_pred CCCccEEEEc------chhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 694 ANKYDRIISC------EMIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 694 ~~~fD~i~s~------~~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
.++||.|+.- +++.--++ ....+++....++|||||.++.++++....
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2359999973 33321111 235788999999999999999998886544
No 403
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.33 E-value=9e-07 Score=82.81 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=57.3
Q ss_pred eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC---C-CccEEEEcch
Q 035870 632 EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA---N-KYDRIISCEM 705 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~---~-~fD~i~s~~~ 705 (842)
.|+|+.||.|+.++++|+. ..+|+++|+++..++.|+.+++-.|+.++|+++++|+.++... . .||+|++...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 6999999999999999998 7799999999999999999999999999999999998776521 1 2899998754
No 404
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.32 E-value=8.8e-06 Score=93.16 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe--CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC--GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.++ .|++|+.+++|++|..+++++ .|.+ .+|+ .+.|+.||+|+....
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457888888775 589999999999998776654 3433 3444 578999999987643
No 405
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.32 E-value=1e-05 Score=86.28 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeC--CCc---EEEEeCCCc----EEeCCEEEEccChHHHHHhhc
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPA--DKG---CTIVCGDGS----REFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~---v~V~~~~G~----~~~ad~VV~A~p~~~~~~ll~ 277 (842)
...-|...+.+.+.+|++++.|++|..+ +++ |.+...++. .+.++.||+|+.+-.+.+||-
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl 264 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLL 264 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHH
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhc
Confidence 3344445554448999999999999664 443 455555564 467899999998877777763
No 406
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.31 E-value=5.1e-06 Score=94.55 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC--CC--cEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG--DG--SREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|..+++++.|++. +| +++.+|.||+|+..
T Consensus 212 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 212 DAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 3467788888999999999999999999877666655543 56 36999999999763
No 407
>PLN02507 glutathione reductase
Probab=98.31 E-value=1.9e-05 Score=90.13 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++|++++.|++|+.+++++.|.+.+|+++.+|.||++++.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 4677778888888999999999999999877778888888888999999999763
No 408
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.31 E-value=3.8e-06 Score=95.74 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=34.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++|++||..|++.|++|+|+|+. .+||.|
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c 42 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTC 42 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcce
Confidence 7999999999999999999999999999984 788854
No 409
>PLN02815 L-aspartate oxidase
Probab=98.30 E-value=7.9e-06 Score=94.58 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=33.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||+|||+||+.+++.| +|+|+||....||.
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 8999999999999999999999 99999999987873
No 410
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.30 E-value=8.1e-06 Score=82.08 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.|+|||+|+|||||+..+...|-.|++||+...+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 38999999999999999999988899999999999954
No 411
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=1.1e-05 Score=93.97 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC----CcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD----KGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~----~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|++|+.++.|++|..++ ++| .|. ..+|+ .+.|+.||+||....
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 5688889998888899999999999998765 443 333 24564 578999999987654
No 412
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.29 E-value=6.2e-06 Score=96.65 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=47.2
Q ss_pred CcEEEECCChHHHHHHHHHHh-CCCeEEEEecCCCC--CCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAK-AGVEVVLYEKDDYL--GGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~-~G~~V~VlEa~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++||++|..|++ .|++|+|+|+.+.. .|++ . +..++..++++++|+....
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA--------------~----gl~prtleiL~~lGl~d~l 94 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQA--------------D----GIACRTMEMFQAFGFAERI 94 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCee--------------e----EEChHHHHHHHhccchHHH
Confidence 389999999999999999999 49999999997532 2211 0 1246888999999997665
Q ss_pred c
Q 035870 78 S 78 (842)
Q Consensus 78 ~ 78 (842)
.
T Consensus 95 ~ 95 (634)
T PRK08294 95 L 95 (634)
T ss_pred H
Confidence 4
No 413
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=8.1e-06 Score=80.38 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
+..++..|.++||.+|||-|+|+|.++.++++. +-.++..+|+.+.-.+.|.+..++.|+.++|++.+.|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 356888999999999999999999999999988 557999999999999999999999999999999999987765
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCc-EEEE
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG-LLVL 733 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG-~~~~ 733 (842)
.+..+|.|+.-- +. +-..+-.+..+||.+| +++.
T Consensus 174 ks~~aDaVFLDl-----Pa--Pw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 174 KSLKADAVFLDL-----PA--PWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cccccceEEEcC-----CC--hhhhhhhhHHHhhhcCceEEe
Confidence 367899998742 22 3344555666888876 5554
No 414
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.28 E-value=1.8e-05 Score=89.57 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=35.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
.||+|||||++|+++|++|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 5899999999999999999999999999999998887
No 415
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.28 E-value=6.7e-07 Score=98.89 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc--EEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS--REFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VV~A~p~ 269 (842)
-..+.+.+.+.+++.|.+++++++|++++..++++.|++++|+ ++++|.|++|+.-
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence 4578888999998878999999999999998888888888876 6889999999863
No 416
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=6.6e-06 Score=93.54 Aligned_cols=39 Identities=38% Similarity=0.582 Sum_probs=36.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||++|++||..|++.|++|+|+|+.+.+||.|
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 389999999999999999999999999999987889854
No 417
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.28 E-value=1.4e-05 Score=100.06 Aligned_cols=38 Identities=42% Similarity=0.734 Sum_probs=36.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||.|||+||...++.|.+|+||||.+..||.+
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 89999999999999999999999999999999999954
No 418
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.28 E-value=4e-06 Score=97.11 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=34.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||+|||+||..|++.|++|+|+|+. .+||.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~ 42 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI 42 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE
Confidence 38999999999999999999999999999994 677743
No 419
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.28 E-value=8e-07 Score=101.21 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC--C--cEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD--G--SREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|+.+++++.|+..+ | +++.+|.||+++..
T Consensus 223 d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 35677888888988999999999999999887777666543 3 46899999999863
No 420
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=5.5e-06 Score=91.02 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK- 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~- 693 (842)
...+...++.++..++++|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |++|+.+|.++..+
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~ 356 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhhh
Confidence 456677888888889999999999999999999987 789999999999999999999999997 59999999988872
Q ss_pred ---CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 694 ---ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 694 ---~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
...+|.|+....=.-.+ +.+++.+.+ ++|...++++
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred ccccCCCCEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEe
Confidence 35889999864322221 255555544 5777788874
No 421
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.27 E-value=1.3e-05 Score=93.04 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEE-E---EeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCT-I---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+.+. +++++.++.|+++..++++|. | ...+|+ .+.|+.||+|+....
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 56888888877654 789999999999998776652 2 234664 578999999987643
No 422
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.27 E-value=7.2e-06 Score=97.05 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=89.5
Q ss_pred HHHHHHcCC-CCCCeEEEeccCchHHHHHHHHh-----c--------------------------------------CCE
Q 035870 619 SLLIEKARV-SKGQEVLEIGCGWGTLAIEIVKR-----T--------------------------------------GCK 654 (842)
Q Consensus 619 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-----~--------------------------------------~~~ 654 (842)
..|+...+. +++..++|-+||+|.+.+.+|.. + ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 455666666 67889999999999999998763 1 136
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c--CCCccEEEEcchhh-hcCh-hhHHHHHHHHHhccc---
Q 035870 655 YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K--ANKYDRIISCEMIE-AVGH-EFMEEFFGCCESLLA--- 726 (842)
Q Consensus 655 v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~--~~~fD~i~s~~~~~-~~~~-~~~~~~~~~~~~~Lk--- 726 (842)
++|+|+++++++.|++++..+|+.+.+++.++|+.+++ + .++||+|++|..+. .+++ .....+.+.+.+.||
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~ 338 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF 338 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888999999998886 2 25799999997653 2222 234555555555554
Q ss_pred cCcEEEEEe
Q 035870 727 EDGLLVLQF 735 (842)
Q Consensus 727 pgG~~~~~~ 735 (842)
||+.+++.+
T Consensus 339 ~g~~~~llt 347 (702)
T PRK11783 339 GGWNAALFS 347 (702)
T ss_pred CCCeEEEEe
Confidence 888887743
No 423
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.27 E-value=5.9e-07 Score=96.78 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCC--CCC--CeEEEeccCchHHHHHHHHhcCCEEEEE---cCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 035870 615 MRKVSLLIEKARV--SKG--QEVLEIGCGWGTLAIEIVKRTGCKYTGI---TLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687 (842)
Q Consensus 615 ~~~~~~l~~~l~~--~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gi---d~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (842)
...++.|.+.+.. ..| ..+||||||.|.++.++.++ +..+..+ |..+.|++.|-+| |++.- +-..-
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~--~~~~~ 171 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAM--IGVLG 171 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchh--hhhhc
Confidence 4455566666554 333 36899999999999999987 5544444 3344567777666 55421 11222
Q ss_pred ccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 688 YRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 688 ~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
...+| +++.||+|-|..++-...... .-++-++.|+|+|||+++++...
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 46677 889999999987765443322 45788999999999999996554
No 424
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.27 E-value=4.3e-06 Score=85.50 Aligned_cols=108 Identities=30% Similarity=0.341 Sum_probs=81.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCCeEEEEccccCCc--cCC-CccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGL---QDLIRLYLCDYRQLA--KAN-KYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l---~~~v~~~~~d~~~~~--~~~-~fD~i 700 (842)
+...+||-||.|.|+.+..+.+.+ ..+|+.+|+++..++.|++.+..... .++++++.+|....- ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 467899999999999999998874 46999999999999999998764321 358999999986654 224 89999
Q ss_pred EEcchhhhcCh--hhHHHHHHHHHhccccCcEEEEEe
Q 035870 701 ISCEMIEAVGH--EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 701 ~s~~~~~~~~~--~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.-..-...+. -.-.++++.+++.|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 98433211111 123789999999999999999987
No 425
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.26 E-value=6.3e-06 Score=93.83 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC---CCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG---DGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~~~~ad~VV~A~p~ 269 (842)
..+...+.+.+++.|++++++++|++|..+++++.|++. +++++.+|.||+|+..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 456677788888889999999999999987666555543 2357999999999763
No 426
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.8e-06 Score=86.98 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+....-|.++.. ..|.+++..++.+.|+|.+|+ ++|+.||+|+...
T Consensus 63 L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 63 LMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred HHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCc
Confidence 333444444444777766 788888877767799999996 9999999998765
No 427
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=1.8e-05 Score=92.24 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 899999999999999999999999999999887666
No 428
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.24 E-value=9.9e-07 Score=93.41 Aligned_cols=43 Identities=37% Similarity=0.628 Sum_probs=39.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT 43 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~ 43 (842)
++|+|||||+||++||..|++.|++|.++|+++.+||++....
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 5799999999999999999999999999999999999976543
No 429
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.23 E-value=3.4e-06 Score=90.58 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--------TGCKYTGITLSEEQLKYAEMKVKEAGLQDL-IRLYLC 686 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~~ 686 (842)
...+.|++.+...++.+|+|-.||+|.+...+.+. ...+++|+|+++.++..|+-++.-.+.... ..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 44457777778888999999999999999888762 467999999999999999988766555433 468888
Q ss_pred cccCCc--c-CCCccEEEEcchhhhc--Ch----------------h-hHHHHHHHHHhccccCcEEEEEe
Q 035870 687 DYRQLA--K-ANKYDRIISCEMIEAV--GH----------------E-FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 687 d~~~~~--~-~~~fD~i~s~~~~~~~--~~----------------~-~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|....+ . ..+||+|+++..+-.. .+ . .--.++..+.+.||+||++.+..
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 866555 2 4799999999765433 10 0 11247888999999999977643
No 430
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.21 E-value=8.8e-06 Score=80.13 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHH-------HcCC-CCCeEEEEc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCK-YTGITLSEEQLKYAEMKVK-------EAGL-QDLIRLYLC 686 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gid~s~~~~~~a~~~~~-------~~~l-~~~v~~~~~ 686 (842)
..+..+++.+++.+++..+|||||.|.....+|...+++ .+||++.+...+.|++..+ ..|. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 345677888999999999999999999999998776765 9999999998887775332 3333 346888999
Q ss_pred cccCCc----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 687 DYRQLA----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 687 d~~~~~----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
|+.+.+ .-..-|+|+++.... + +.+...+.++...||||-+++-
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 987654 114579999987643 2 2355666777788999888764
No 431
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.2e-05 Score=81.87 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=136.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCC---------------------eeeecceEeecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG---------------------VDLDLGFMVFNRVT 60 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g---------------------~~~d~G~~~~~~~~ 60 (842)
||+|+|-|+.=...+..|+..|.+|+.+++++.-||-.+|.+... +.+|+=+.++ ..
T Consensus 6 DvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~l--mA 83 (440)
T KOG1439|consen 6 DVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFL--MA 83 (440)
T ss_pred eEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhh--hc
Confidence 799999999999999999999999999999999999998865311 2233333333 13
Q ss_pred chhHHHHHHHcCCCccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhc-
Q 035870 61 YPNMMEFFESLGVDMEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELE- 137 (842)
Q Consensus 61 ~~~~~~l~~~lGl~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (842)
...+..++-+.|+...... .+-...+..|+.+..+.. -...+. ..++.-. ..+.+.+|......+.+.-.
T Consensus 84 n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t--~~Ea~~--s~lmgl~---eKrr~~kFl~~V~n~~e~~~~ 156 (440)
T KOG1439|consen 84 NGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPAT--EAEALT--SPLMGLF---EKRRVMKFLKFVLNYDEEDPK 156 (440)
T ss_pred cchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCC--HHHHhc--CCccchh---HHHHHHHHHHHHhhhhhhccc
Confidence 3445566666676654432 222333455554443321 101110 1111111 12223333333333222211
Q ss_pred CCCCCCc-cccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHH----HHHHHhhccccccCCCCceEEecC
Q 035870 138 SNPDIDR-SETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFS----VLSFCRNHHLLQLFGRPQWLTVRW 212 (842)
Q Consensus 138 ~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g 212 (842)
.....+. ..++.+++.+.+..+...+..- ..++.....+ ..+.|+.. +..|+.+ ...++...+.++..
T Consensus 157 ~~~~~~~~k~tm~~~~~~~~l~~~~~~f~g-h~~al~~dd~---~ld~p~~~~~~ri~~Y~~S---~~~yg~~~ylyP~y 229 (440)
T KOG1439|consen 157 TWQGYDLSKDTMREFLGKFGLLEGTIDFIG-HAIALLCDDS---YLDQPAKETLERILLYVRS---FARYGKSPYLYPLY 229 (440)
T ss_pred cccccccccchHHHHHHHhcccccceeeee-eeeEEEecch---hccCccHHHHHHHHHHHHH---HhhcCCCcceeccc
Confidence 1112212 2378888887766543222110 0011111111 11223322 2334433 22233444889999
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE--EEEeCCCcEEeCCEEEEc
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC--TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v--~V~~~~G~~~~ad~VV~A 266 (842)
|.+.+++++++...-.|++..+|.++.+|....++. +|.. .++...++.||+-
T Consensus 230 GlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~-~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 230 GLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKS-GGEVAKCKKVICD 284 (440)
T ss_pred CcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEec-CCceeecceEEec
Confidence 999999999998777799999999999999954453 3433 3346778876665
No 432
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=1.1e-05 Score=79.04 Aligned_cols=97 Identities=22% Similarity=0.328 Sum_probs=84.2
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC-ccEEEEcchhh
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK-YDRIISCEMIE 707 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~-fD~i~s~~~~~ 707 (842)
+.+++|||+|-|--++.+|-. ++.+||-+|....-+.+.++-..+.+++ |++++++.++++..+.+ ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehc--
Confidence 689999999999999998833 7888999999999999999999999997 89999999999984445 999999754
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
.. +..++.-+..++|+||.++.
T Consensus 145 --a~--L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 --AS--LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --cc--hHHHHHHHHHhcccCCcchh
Confidence 22 78888899999999998765
No 433
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.16 E-value=1.6e-06 Score=105.09 Aligned_cols=40 Identities=43% Similarity=0.695 Sum_probs=38.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|||+.+.+||..+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 6899999999999999999999999999999999999654
No 434
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.16 E-value=7.2e-05 Score=75.91 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCc--EEeCCEEEEccChHHHHHh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGS--REFYNSCVMALHAPDALKI 275 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~--~~~ad~VV~A~p~~~~~~l 275 (842)
++-+.|.+.+++.|+.+..+-+|.+.+..+++| .|-|.++. .++||.+|+|+.....+.|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 677888888999999999999999999999998 46666664 4789999999987644433
No 435
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.15 E-value=4e-05 Score=75.52 Aligned_cols=99 Identities=25% Similarity=0.307 Sum_probs=73.9
Q ss_pred EEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-cCCccCCCccEEEEcchhhhcC
Q 035870 633 VLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY-RQLAKANKYDRIISCEMIEAVG 710 (842)
Q Consensus 633 vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~~~~~fD~i~s~~~~~~~~ 710 (842)
|.||||-.|.+.++|.++. ..+++++|+++.-++.|+++++..|+.++++++++|- ..+++.+..|.|+..+|--..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 6899999999999999982 2379999999999999999999999999999999994 555554458999998875543
Q ss_pred hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 711 HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 711 ~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
...++.+....++..-.++++.
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEEE
T ss_pred ---HHHHHHhhHHHhccCCeEEEeC
Confidence 6778888777777666787753
No 436
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.14 E-value=5.9e-05 Score=87.08 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=33.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||+|+|||+||+.+++. .+|+|+||....||.
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 899999999999999999986 899999998887773
No 437
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.13 E-value=2.2e-06 Score=102.99 Aligned_cols=40 Identities=50% Similarity=0.782 Sum_probs=38.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+++.+||.++
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 5899999999999999999999999999999999999764
No 438
>PRK00536 speE spermidine synthase; Provisional
Probab=98.12 E-value=1.9e-05 Score=80.48 Aligned_cols=100 Identities=18% Similarity=0.039 Sum_probs=77.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEccccCCccCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA--GL-QDLIRLYLCDYRQLAKANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~~~~~fD~i~s~ 703 (842)
.+..++||=||.|-|+.++.+.+++ .+|+.+||++++++.+++.+... ++ .+|++++. .+.+. ..++||+||+-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~-~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDL-DIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhc-cCCcCCEEEEc
Confidence 3556899999999999999999985 59999999999999999954431 12 34787776 22221 23689999986
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.. . .+.+++.+++.|+|||.++.|.-
T Consensus 147 s~----~---~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 147 QE----P---DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CC----C---ChHHHHHHHHhcCCCcEEEECCC
Confidence 43 1 36888999999999999999754
No 439
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.11 E-value=8.2e-05 Score=80.28 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=83.8
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccC-CCCceEEecCChhHHHHHHHH
Q 035870 145 SETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLF-GRPQWLTVRWRSHSYVNKVRK 223 (842)
Q Consensus 145 ~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~~L~~ 223 (842)
..+..+|+.+.++++.+.+.++.+.++..|+.+. ++. ++. ++..+. ..++.+.+.||+.++++.|.+
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~---a~~--------G~vSla~a~~gl~sV~GGN~qI~~~ll~ 136 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIH---AFA--------GLVSLAGATGGLWSVEGGNWQIFEGLLE 136 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chh---hhh--------hheeeeeccCCceEecCCHHHHHHHHHH
Confidence 5688999999999999999999999999999763 342 211 111111 235778999999999999999
Q ss_pred HhhhcCceEEeCCCeeEE-EeCCCc---EEEEeCC--Cc-EEeCCEEEEccChHHHH
Q 035870 224 QLESWGCQIRTSSEVCSV-LPADKG---CTIVCGD--GS-REFYNSCVMALHAPDAL 273 (842)
Q Consensus 224 ~l~~~G~~i~~~~~V~~I-~~~~~~---v~V~~~~--G~-~~~ad~VV~A~p~~~~~ 273 (842)
.- +++| ++++|++| ...+++ +.|++.+ +. .-.+|.||+|+|.....
T Consensus 137 ~S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 137 AS---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred Hc---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 76 8899 99999999 444444 4565543 22 34579999999986443
No 440
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.11 E-value=1.7e-05 Score=90.18 Aligned_cols=38 Identities=42% Similarity=0.691 Sum_probs=34.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||.+|++||..|++.|.+|+|+|+. .+||.|
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c 39 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAA 39 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcc
Confidence 68999999999999999999999999999985 578855
No 441
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.10 E-value=6.6e-05 Score=87.04 Aligned_cols=33 Identities=30% Similarity=0.617 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHH----hCCCeEEEEecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLA----KAGVEVVLYEKDDY 34 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~----~~G~~V~VlEa~~~ 34 (842)
||+|||||+|||+||+.++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999775
No 442
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.10 E-value=5.4e-05 Score=81.44 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCc-EEEEeC-----CCcEEeCCEEEEccChHHHHH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKG-CTIVCG-----DGSREFYNSCVMALHAPDALK 274 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~-v~V~~~-----~G~~~~ad~VV~A~p~~~~~~ 274 (842)
.+.|++.|.+.+.+. |.+++++++|+.|.+.+++ |.|++. +..++.|+.|++.+....+.-
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L 247 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL 247 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence 578999999999887 8999999999999999887 888763 224799999999998886653
No 443
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=3.6e-06 Score=84.09 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
++...++.. ..+..++|+|||.|-... ..+.+.+.|.|++...+.-+++. | ......+|+.++| .+.
T Consensus 35 ~v~qfl~~~--~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 35 MVRQFLDSQ--PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFREE 102 (293)
T ss_pred HHHHHHhcc--CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCCC
Confidence 344455544 358899999999997753 34788999999999998888754 1 2267899999999 778
Q ss_pred CccEEEEcchhhhcChh-hHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 696 KYDRIISCEMIEAVGHE-FMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~-~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+||.++++.++||+..+ ....+++++.+.|+|||..++..+...
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 99999999999999755 456789999999999999988776543
No 444
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.09 E-value=3.2e-05 Score=83.64 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=83.7
Q ss_pred CCeEEEeccCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcch
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEM 705 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~ 705 (842)
+.+|||+.||+|..++.++.+ .| .+|+++|+|++.++.++++++.+++. ++++.+.|+..+. ...+||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 468999999999999999987 23 58999999999999999999998876 7899999988765 236799999865
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+ +. ...++..+.+.+++||.+++..
T Consensus 123 f---Gs--~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GT--PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CC--cHHHHHHHHHhcccCCEEEEEe
Confidence 3 22 3578888999999999999963
No 445
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=1.8e-05 Score=85.46 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC---CCeEEEEecCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA---GVEVVLYEKDDYLGG 37 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~---G~~V~VlEa~~~~GG 37 (842)
++|+|||+|++|+..|.+|.+. -..|.|+|.....|+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 6899999999999999999886 123999999999987
No 446
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.06 E-value=3.2e-06 Score=96.30 Aligned_cols=38 Identities=55% Similarity=0.771 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
|+|+|||||+|||+||..|.+.|++|++||+++.+||.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~ 39 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGL 39 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCcc
Confidence 78999999999999999999999999999999999994
No 447
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.05 E-value=4.1e-06 Score=100.10 Aligned_cols=40 Identities=50% Similarity=0.835 Sum_probs=38.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+++.+||.++
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 6899999999999999999999999999999999999775
No 448
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.05 E-value=4.2e-05 Score=86.71 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeC-CCc-EEEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPA-DKG-CTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~-~~~-v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+...|.+.+++. +++++. ..|+.+..+ +++ +.|.+.+|..+.||.||+|+..+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4556666677666 567754 477777665 444 478889998999999999998874
No 449
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.04 E-value=4.1e-05 Score=77.22 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCC-CeEEEeccC--chHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE
Q 035870 609 DLKAAQMRKVSLLIEKARVSKG-QEVLEIGCG--WGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL 683 (842)
Q Consensus 609 ~l~~aq~~~~~~l~~~l~~~~~-~~vLDiGcG--~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~ 683 (842)
.+..+.+..+.+.++.+.-..| ...|||||| +-.....+|+. ++++|+-+|.++-.+..++..+....- .+..+
T Consensus 47 ~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~ 125 (267)
T PF04672_consen 47 EAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAY 125 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEE
Confidence 4566667777777777665534 579999999 44567778776 889999999999999999998876531 13899
Q ss_pred EEccccCCc---c----CCCcc-----EEEEcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCcc
Q 035870 684 YLCDYRQLA---K----ANKYD-----RIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSS 750 (842)
Q Consensus 684 ~~~d~~~~~---~----~~~fD-----~i~s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 750 (842)
+++|+++.. . .+-+| .|+.+.++||+++ +++..+++.++..|.||.+++++..+..... .......
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-~~~~~~~ 204 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-ERAEALE 204 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-HHHHHHH
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-HHHHHHH
Confidence 999998754 1 12333 7888899999987 6899999999999999999999887764321 1111111
Q ss_pred chhhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 751 DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 751 ~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
....+-- ....+-|.+++... . .||++.+
T Consensus 205 ~~~~~~~-~~~~~Rs~~ei~~~-f--~g~elve 233 (267)
T PF04672_consen 205 AVYAQAG-SPGRPRSREEIAAF-F--DGLELVE 233 (267)
T ss_dssp HHHHHCC-S----B-HHHHHHC-C--TTSEE-T
T ss_pred HHHHcCC-CCceecCHHHHHHH-c--CCCccCC
Confidence 2222221 11344567777543 3 3787643
No 450
>PRK12831 putative oxidoreductase; Provisional
Probab=98.04 E-value=4.6e-06 Score=94.31 Aligned_cols=40 Identities=43% Similarity=0.541 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999999999999999764
No 451
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.02 E-value=5.2e-06 Score=93.01 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=37.3
Q ss_pred CcEEEECCChHHHHHHHHHHh--CCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAK--AGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~--~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||..|++ .|++|+|+|+.+.+||.++
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 589999999999999999987 6999999999999999765
No 452
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.01 E-value=6e-05 Score=78.89 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=95.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
.....+...++++|||+.++.|+-+.++++.. ...|++.|+++.-+...++++++.|.. ++.+...|..... ..
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccc
Confidence 34456778899999999999999999999883 479999999999999999999999986 7888888987773 33
Q ss_pred CCccEEEEc------chhhhcCh--------------hhHHHHHHHHHhcc----ccCcEEEEEeecCCC
Q 035870 695 NKYDRIISC------EMIEAVGH--------------EFMEEFFGCCESLL----AEDGLLVLQFISIPD 740 (842)
Q Consensus 695 ~~fD~i~s~------~~~~~~~~--------------~~~~~~~~~~~~~L----kpgG~~~~~~~~~~~ 740 (842)
..||.|+.- +++..-++ +...++++.+.+.+ ||||+++..+++...
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 469999973 23322221 12467899999999 999999999887543
No 453
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.01 E-value=1.1e-05 Score=78.98 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=72.9
Q ss_pred HHHHHHHHHcC-CCC--CCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC
Q 035870 616 RKVSLLIEKAR-VSK--GQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ 690 (842)
Q Consensus 616 ~~~~~l~~~l~-~~~--~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 690 (842)
-|+..+.++.+ +++ +.++||+||+.|+++..+.++. ..+|+|+|+.+. ..+ ..+.++++|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch
Confidence 46777888877 555 4899999999999999999884 489999999986 111 256777777543
Q ss_pred Cc---------c--CCCccEEEEcchhhhcCh---------hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 691 LA---------K--ANKYDRIISCEMIEAVGH---------EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 691 ~~---------~--~~~fD~i~s~~~~~~~~~---------~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.. . .++||+|+|-.....-++ +-....+.-+.+.|||||.+++-.+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 21 2 268999999773332221 11334455566789999999986655
No 454
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00023 Score=73.54 Aligned_cols=247 Identities=15% Similarity=0.224 Sum_probs=137.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC--------------------CeeeecceEeecCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--------------------GVDLDLGFMVFNRVTY 61 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--------------------g~~~d~G~~~~~~~~~ 61 (842)
||+|+|-|+.=...+..|+-.|.+|+++++++.-|+-.+|.+.. .+.+|.-+..+. ..
T Consensus 8 Dvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~--A~ 85 (434)
T COG5044 8 DVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF--AN 85 (434)
T ss_pred cEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc--cc
Confidence 89999999999999999999999999999999999998885431 133444444442 34
Q ss_pred hhHHHHHHHcCCCccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 035870 62 PNMMEFFESLGVDMEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESN 139 (842)
Q Consensus 62 ~~~~~l~~~lGl~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (842)
..+..++.+.|+...... .+-...+.+++.+..+.. -...+. ...++-. ..+.+.+|......+.......
T Consensus 86 s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~n--e~ei~~--s~~lsL~---eKr~vmrFl~~V~n~~~~~~~~ 158 (434)
T COG5044 86 SELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYN--EAEIFT--SPLLSLF---EKRRVMRFLKWVSNYAEQKSTL 158 (434)
T ss_pred chHHHHHHHhChHhheeeeeccccEEecCCcEEECCcc--HHhhhc--CCCcchh---hHHHHHHHHHHHHhHHhhhhhc
Confidence 456677777777655432 222333445554443321 111111 1111111 1122233332233332222222
Q ss_pred CCCCccccHHHHHHhc-CCCHHHHHHHHHHhhhcccCCCchhhccCCHH-HHHHHHhhccccccCCCCceEEecCChhHH
Q 035870 140 PDIDRSETLGQFVNSR-GYSELFQKAYLIPICGSIWSCPSEGVTSFSAF-SVLSFCRNHHLLQLFGRPQWLTVRWRSHSY 217 (842)
Q Consensus 140 ~~~~~~~s~~~~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 217 (842)
.....+.+..+++.+. +.+....+.+...++ ..+. -+.+...+. -++.|+.+- ..++...+.+++-|.+.+
T Consensus 159 ~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~-l~ld---l~~p~re~~erIl~Y~~Sf---~~yg~~pyLyp~YGl~El 231 (434)
T COG5044 159 QELYESKDTMEFLFEKFGLSGATEEFIGHGIA-LSLD---LDIPAREALERILRYMRSF---GDYGKSPYLYPRYGLGEL 231 (434)
T ss_pred hhhhhcccHHHHHHHHHccCcchhhhhhhhhh-hhcc---ccCCchHHHHHHHHHHHhh---cccCCCcceeeccCchhh
Confidence 2222233455554433 333322222222211 1111 111111222 234555542 334456678889889999
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEc
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A 266 (842)
++++++...-.|++..+|+++.+|..... | +|.. ++.+..|..||..
T Consensus 232 ~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 232 SQGFARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred hHHHHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccCC
Confidence 99999988778999999999999988776 3 2322 3347788887765
No 455
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.99 E-value=7.5e-05 Score=77.81 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
+.+..+-..+..-...+|||+|||.|..+-.+.+.. -.+++++|.|+.|++.++..++................+..+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 344445444444456699999999998765554432 357999999999999999877654321111111111222222
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
....|+|++.++|..++++....+++++.+.+.+ .+++.+.+.+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 2344999999999999887788888888887776 77776665553
No 456
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.98 E-value=2.3e-05 Score=88.81 Aligned_cols=44 Identities=27% Similarity=0.245 Sum_probs=35.2
Q ss_pred hcCceEEeCCCeeEEEeCCCcEEEEeC-CCcEEe--CCEEEEccChH
Q 035870 227 SWGCQIRTSSEVCSVLPADKGCTIVCG-DGSREF--YNSCVMALHAP 270 (842)
Q Consensus 227 ~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~--ad~VV~A~p~~ 270 (842)
+.|++++++++|++|+.+++.+.+... +|+++. +|++|+|+...
T Consensus 68 ~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 68 KSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 348899999999999998887777653 355666 99999998753
No 457
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.98 E-value=0.00016 Score=82.28 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.|+++|++|++++.+++|...++++.|+..+| +++.+|.||+|+..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 46777888889999999999999999988766666766555 37999999999863
No 458
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.96 E-value=6e-05 Score=75.82 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-----EEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-----CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-----v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+...+.+.++..|++|.+|-+|+.|..+.+. ++|....|+++++..||-++..
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl 255 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGL 255 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccc
Confidence 477788888899999999999999999987764 5666666788999988877653
No 459
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.95 E-value=0.00012 Score=82.68 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+. . .|++.+|+++.+|.||++++.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 45777888889899999999999999963 2 466677888999999999864
No 460
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.95 E-value=3.7e-05 Score=83.25 Aligned_cols=88 Identities=27% Similarity=0.413 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
...++.+++.++..++ +|||+-||.|.+++.+|+. ..+|+|||+++++++.|+++++.+++. +++|+.++..++.
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKA 259 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHH
Confidence 3566777888887766 8999999999999999997 779999999999999999999999996 8999998765542
Q ss_pred ---------------cCCCccEEEEcch
Q 035870 693 ---------------KANKYDRIISCEM 705 (842)
Q Consensus 693 ---------------~~~~fD~i~s~~~ 705 (842)
....+|+|+....
T Consensus 260 ~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 260 LAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp HCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred HHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 1236899987644
No 461
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.91 E-value=8e-06 Score=91.56 Aligned_cols=39 Identities=44% Similarity=0.739 Sum_probs=33.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||||||||++|++||+.+++.|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 799999999999999999999999999999999999654
No 462
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.90 E-value=0.00026 Score=76.63 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc-EEeCCEEEEccC
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS-REFYNSCVMALH 268 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~A~p 268 (842)
..++.+...+.|+++|++|+++++|++|+.++ |++.+|+ ++.++.||-|+.
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAG 259 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCC
Confidence 45777777888888999999999999997643 5666776 599999999975
No 463
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.90 E-value=6.6e-05 Score=78.05 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
.+..+.+++.+.+.++..|||||+|.|.++..+++. +.+|+++|+++..++..+++... .++++++.+|+.++. .
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccH
Confidence 355678899999989999999999999999999998 68999999999999999987652 348999999999887 2
Q ss_pred C---CCccEEEEcchhhhcChhhHHHHHHHHHh
Q 035870 694 A---NKYDRIISCEMIEAVGHEFMEEFFGCCES 723 (842)
Q Consensus 694 ~---~~fD~i~s~~~~~~~~~~~~~~~~~~~~~ 723 (842)
. .....|+++-.. +++. .++.++-.
T Consensus 92 ~~~~~~~~~vv~NlPy-~is~----~il~~ll~ 119 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NISS----PILRKLLE 119 (262)
T ss_dssp GHCSSSEEEEEEEETG-TGHH----HHHHHHHH
T ss_pred HhhcCCceEEEEEecc-cchH----HHHHHHhh
Confidence 2 356788887665 4433 44444444
No 464
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.89 E-value=1.1e-05 Score=95.39 Aligned_cols=40 Identities=48% Similarity=0.761 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||+.|++.|++|+|+|+.+.+||...
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999654
No 465
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.89 E-value=1e-05 Score=99.16 Aligned_cols=40 Identities=40% Similarity=0.596 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+.+.+||..+
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 5899999999999999999999999999999999999654
No 466
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.88 E-value=1.4e-05 Score=88.07 Aligned_cols=41 Identities=32% Similarity=0.366 Sum_probs=36.8
Q ss_pred CcEEEECCChHHHHHHHHHH-hCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLA-KAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~-~~G~~V~VlEa~~~~GG~~~s 41 (842)
|+|+|||||+|||.||.+|. +.|++|+|+|+.+.+||.++.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 57999999999999999765 679999999999999997763
No 467
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.86 E-value=4.8e-05 Score=78.63 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCC---C--cEEeCCEEEEccC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGD---G--SREFYNSCVMALH 268 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~---G--~~~~ad~VV~A~p 268 (842)
.+...+.+.|+++|.+++++++|+.+..++++ +.|+..+ | ++++||.+.+++.
T Consensus 253 Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 253 EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred HHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 67788888888899999999999999999884 5555432 3 3689999999875
No 468
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.86 E-value=0.00012 Score=68.20 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=73.4
Q ss_pred CCCCCeEEEeccCchHHHHHHHH-----hcCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEccccCCccCCCccE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVK-----RTGCKYTGITLSEEQLKYAEMKVKEAG--LQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~v~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
..+..+|+|+|||-|.++..++. .++.+|++||.++..++.++++.+..+ +..++++..++..+.......+.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 36788999999999999999999 678999999999999999999998887 54567777777665543456778
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
++.. |.-++- -+.+++...+ |+-.+++
T Consensus 103 ~vgL---HaCG~L-s~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 103 LVGL---HACGDL-SDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEe---ecccch-HHHHHHHHHH---cCCCEEE
Confidence 8764 444431 2344444444 5444443
No 469
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.85 E-value=1.2e-05 Score=89.07 Aligned_cols=40 Identities=43% Similarity=0.601 Sum_probs=38.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||++.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 6899999999999999999999999999999999999765
No 470
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=7.2e-05 Score=67.67 Aligned_cols=150 Identities=16% Similarity=0.171 Sum_probs=99.2
Q ss_pred HHHcCCCCCCeEEEeccCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEccccCCc---cC
Q 035870 622 IEKARVSKGQEVLEIGCGW-GTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQ--DLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~--~~v~~~~~d~~~~~---~~ 694 (842)
++..+.-.|.+|||+|.|. |..++.+|.. +...|..+|-+++.++..++....+-.+ .++.++..+..... ..
T Consensus 22 l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq 101 (201)
T KOG3201|consen 22 LRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQ 101 (201)
T ss_pred HhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhh
Confidence 3333334578999999995 4445556655 6789999999999999998876655221 13444444433222 34
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHh
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMS 774 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 774 (842)
..||.|++..++.. ++....+.+.|+++|+|.|..++..+-.. -|++.+.+...
T Consensus 102 ~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPRRg------------------------~sL~kF~de~~ 155 (201)
T KOG3201|consen 102 HTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPRRG------------------------QSLQKFLDEVG 155 (201)
T ss_pred CcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEecCccc------------------------chHHHHHHHHH
Confidence 58999999887655 35578999999999999999777432211 14555566666
Q ss_pred hcCCcEEEEEEecCccHHHHHHHHHHHH
Q 035870 775 VASRLCVEQVENIGIHYYQTLRCWRKNF 802 (842)
Q Consensus 775 ~~~gf~v~~~~~~~~~y~~tl~~w~~~~ 802 (842)
. .||.+.-.+ .|..++..-..++
T Consensus 156 ~-~gf~v~l~e----nyde~iwqrh~~L 178 (201)
T KOG3201|consen 156 T-VGFTVCLEE----NYDEAIWQRHGRL 178 (201)
T ss_pred h-ceeEEEecc----cHhHHHHHHHHHH
Confidence 5 799876554 4555554444443
No 471
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.85 E-value=0.00033 Score=84.51 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC--cEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK--GCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~--~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.++++|++|++++.|++|..++. ...|++.+|+++.+|.||+|++.
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 4556677888888999999999999986542 35678889999999999999863
No 472
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.85 E-value=1.4e-05 Score=94.36 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
|+|+|||||+|||+||++|++.|++|+|+|+.+..|+.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 68999999999999999999999999999998776653
No 473
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.83 E-value=1.5e-05 Score=75.97 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=74.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC-----ccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK-----YDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~-----fD~i~s~ 703 (842)
....|+|.-||.|+.++..|.+ ++.|++||+++.-+..|+.+++-.|++++|+|+++|+.++-..-+ +|+|...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4568999999999999999998 899999999999999999999999999999999999887652223 4455554
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcE
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
.... +.++...-+-.+...++|.|.
T Consensus 173 ppwg--gp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PPWG--GPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCC--CcchhhhhhhhhhhhcchhHH
Confidence 4322 222334444455556666543
No 474
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.82 E-value=1.8e-05 Score=89.41 Aligned_cols=39 Identities=49% Similarity=0.612 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||.+
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 589999999999999999999999999999999999965
No 475
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.82 E-value=1.8e-05 Score=95.35 Aligned_cols=40 Identities=45% Similarity=0.584 Sum_probs=37.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+.+.+||..+
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999999999999999654
No 476
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.82 E-value=0.00012 Score=79.15 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhh-cCceEEeCCCeeEEEeCCC-cE-EEEeC--CC--cEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLES-WGCQIRTSSEVCSVLPADK-GC-TIVCG--DG--SREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~-~v-~V~~~--~G--~~~~ad~VV~A~p~ 269 (842)
.+.+.|.+.+++ .+++|..++.+.+|..+++ .+ .|.+. ++ .++.++.||+|+..
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 577888888865 4799999999999999888 44 45443 23 46889999999863
No 477
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.81 E-value=0.00016 Score=80.55 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.++++|++++++++|++|.. ++.+.|++.+|+++.||.||+++...
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 3444556999999999999976 55677888899899999999998643
No 478
>PRK10742 putative methyltransferase; Provisional
Probab=97.81 E-value=7.7e-05 Score=74.37 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=76.6
Q ss_pred HHHHHHcCCCCCC--eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCCeEEEEccc
Q 035870 619 SLLIEKARVSKGQ--EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA------G--LQDLIRLYLCDY 688 (842)
Q Consensus 619 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~------~--l~~~v~~~~~d~ 688 (842)
+.+++.+++++|. +|||+=+|+|..++.++.. ||+|+++|-|+......++.++.. + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 5778888999988 9999999999999999998 999999999999999999988874 2 225799999997
Q ss_pred cCCc--cCCCccEEEEcchhhhc
Q 035870 689 RQLA--KANKYDRIISCEMIEAV 709 (842)
Q Consensus 689 ~~~~--~~~~fD~i~s~~~~~~~ 709 (842)
.+.. ...+||+|+.-.|+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 6654 23479999999998874
No 479
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.81 E-value=0.00018 Score=73.52 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=66.9
Q ss_pred CCeEEEeccCchHH-HHHHHHh--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEccccCCc-cCCCccEEEEcc
Q 035870 630 GQEVLEIGCGWGTL-AIEIVKR--TGCKYTGITLSEEQLKYAEMKVK-EAGLQDLIRLYLCDYRQLA-KANKYDRIISCE 704 (842)
Q Consensus 630 ~~~vLDiGcG~G~~-~~~la~~--~~~~v~gid~s~~~~~~a~~~~~-~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~ 704 (842)
..+|+=||||.=.+ ++.++++ .+..|+++|++++..+.+++-+. ..++..+++|+.+|..+.. .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999996544 4556655 36789999999999999999888 6678889999999998776 347899999765
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
....- .+...+++.++.+.++||..+++-
T Consensus 201 lVg~~-~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMD-AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccc-cchHHHHHHHHHhhCCCCcEEEEe
Confidence 54322 234789999999999999999984
No 480
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.80 E-value=3.1e-05 Score=71.72 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=81.9
Q ss_pred CeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh-hc
Q 035870 631 QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE-AV 709 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~-~~ 709 (842)
+.+.|+|+|+|.++..+|+. ..+|++|+.++.-.+.|.+++.-.|+. +++++.+|+++... +..|+|+|- |+. .+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f-e~ADvvicE-mlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF-ENADVVICE-MLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc-cccceeHHH-HhhHHh
Confidence 68999999999999988886 779999999999999999998777765 89999999998874 467888874 443 33
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
-++.....++.+-..||-++.++=+.
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccHH
Confidence 34445667777888899999887543
No 481
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.80 E-value=7.1e-05 Score=76.64 Aligned_cols=142 Identities=23% Similarity=0.279 Sum_probs=99.1
Q ss_pred hHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHH-HcC-CCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCC
Q 035870 585 NELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIE-KAR-VSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLS 661 (842)
Q Consensus 585 ~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~-~l~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s 661 (842)
.+-+++++|...+||.- + +.+..+.+.- .+. ++.-.++|-+|.|.|..++.+.+.|+ .+++-+|++
T Consensus 254 g~d~rLYldG~LQfsTr---------D--e~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLD 322 (508)
T COG4262 254 GDDLRLYLDGGLQFSTR---------D--EYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLD 322 (508)
T ss_pred cCceEEEEcCceeeeec---------h--hhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecC
Confidence 45678888888888632 1 1333333321 122 23456899999999999999999874 589999999
Q ss_pred HHHHHHHHHHHH-----HcCC-CCCeEEEEccccCCc--cCCCccEEEEcch---hhhcChhhHHHHHHHHHhccccCcE
Q 035870 662 EEQLKYAEMKVK-----EAGL-QDLIRLYLCDYRQLA--KANKYDRIISCEM---IEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 662 ~~~~~~a~~~~~-----~~~l-~~~v~~~~~d~~~~~--~~~~fD~i~s~~~---~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
|+|++.++++.. +..+ +.+++++..|+.++- ....||.||.... -..++.-+-.++..-+++.|+++|.
T Consensus 323 P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl 402 (508)
T COG4262 323 PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGL 402 (508)
T ss_pred HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCce
Confidence 999999994322 1122 348999999988776 3469999997421 1111222346888899999999999
Q ss_pred EEEEeec
Q 035870 731 LVLQFIS 737 (842)
Q Consensus 731 ~~~~~~~ 737 (842)
+++|.-+
T Consensus 403 ~VvQags 409 (508)
T COG4262 403 MVVQAGS 409 (508)
T ss_pred EEEecCC
Confidence 9998643
No 482
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.78 E-value=2.3e-05 Score=85.01 Aligned_cols=36 Identities=47% Similarity=0.603 Sum_probs=33.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
+||+|||||++|+.||+.|++.|++|+|+|+++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999877643
No 483
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.78 E-value=0.00019 Score=79.31 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=40.6
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+.+++.|++++++++|++|..+++++.|++.+|+++.||.||+|+..
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 344555699999999999999887778888899999999999999764
No 484
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=2e-05 Score=89.49 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=36.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++|++||..+++.|.+|+|+|+++.+||.|
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 89999999999999999999999999999878899976
No 485
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.78 E-value=0.00039 Score=74.25 Aligned_cols=56 Identities=25% Similarity=0.243 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+++.+.+.+++.|++|+++|+|..|+..++.+ .|.+++|+++.+|+||+|..-
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 55788999999999999999999999999988864 788899999999999999753
No 486
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.78 E-value=0.00028 Score=86.46 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
||+|||||.|||+||+.+++.|.+|+|+||...
T Consensus 15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 899999999999999999999999999999775
No 487
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=2.4e-05 Score=84.37 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=83.1
Q ss_pred hhcCChHHHHhccCCCCccccc-ccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEE
Q 035870 580 HYDLSNELFSLFLDESMTYSCA-VFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI 658 (842)
Q Consensus 580 ~Yd~~~~~~~~~l~~~~~ys~~-~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gi 658 (842)
+++...-.++.+++-++..|.+ +|+.... +-.-.+..+-+.++++.+..+||+-||||.++..+|+. -.+|+||
T Consensus 337 l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~----~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGv 411 (534)
T KOG2187|consen 337 LVGGDPYITESLLGLTFRISPGAFFQTNTS----AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGV 411 (534)
T ss_pred EEccccEEEeecCCeEEEECCchhhccCcH----HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeee
Confidence 3333334566677777777754 4454432 22234456677888999999999999999999999987 6799999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 659 d~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
++|++.++.|+++++.+|++ |++|+++-.+++-
T Consensus 412 Ei~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 412 EISPDAVEDAEKNAQINGIS-NATFIVGQAEDLF 444 (534)
T ss_pred ecChhhcchhhhcchhcCcc-ceeeeecchhhcc
Confidence 99999999999999999998 8999999666543
No 488
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.77 E-value=2.4e-05 Score=92.25 Aligned_cols=40 Identities=38% Similarity=0.758 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||..+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999653
No 489
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.76 E-value=7.2e-06 Score=76.92 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEA 708 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~ 708 (842)
...++||+|+|.|..+..++.. -.+|.+.++|..|....+++ + ..++. ..+-+.-+-+||+|.|...+.-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl~-~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVLT-EIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cceee-ehhhhhcCceeehHHHHHHHHh
Confidence 4579999999999999998876 35799999999988877654 2 22221 1111112357999999988876
Q ss_pred cChhhHHHHHHHHHhcccc-CcEEEEEe
Q 035870 709 VGHEFMEEFFGCCESLLAE-DGLLVLQF 735 (842)
Q Consensus 709 ~~~~~~~~~~~~~~~~Lkp-gG~~~~~~ 735 (842)
.-+ +-.+++.++.+|+| +|++++.-
T Consensus 182 c~~--p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 182 CFD--PFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hcC--hHHHHHHHHHHhccCCCcEEEEE
Confidence 654 78999999999999 89988754
No 490
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.76 E-value=0.00015 Score=74.78 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCC-----CCCeEEEeccCchHH-HHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEccc
Q 035870 616 RKVSLLIEKARVS-----KGQEVLEIGCGWGTL-AIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA-GLQDLIRLYLCDY 688 (842)
Q Consensus 616 ~~~~~l~~~l~~~-----~~~~vLDiGcG~G~~-~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~ 688 (842)
+.+..+.+.|... ..-++||||||.-.+ .+..++.++++++|+|+++..++.|+++++.+ +|+++|+++...-
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 3444454554432 245899999997644 45555558999999999999999999999999 9999999987642
Q ss_pred cC-----Cc-cCCCccEEEEcchhhhcCh
Q 035870 689 RQ-----LA-KANKYDRIISCEMIEAVGH 711 (842)
Q Consensus 689 ~~-----~~-~~~~fD~i~s~~~~~~~~~ 711 (842)
.. +. +.+.||..+|+..|+.-.+
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS--
T ss_pred ccccchhhhcccceeeEEecCCccccChh
Confidence 21 11 4468999999999887654
No 491
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.76 E-value=2.6e-05 Score=88.69 Aligned_cols=40 Identities=43% Similarity=0.737 Sum_probs=37.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999643
No 492
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.74 E-value=2.8e-05 Score=91.73 Aligned_cols=40 Identities=45% Similarity=0.706 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 6899999999999999999999999999999999999654
No 493
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.73 E-value=3.2e-05 Score=87.60 Aligned_cols=40 Identities=50% Similarity=0.803 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999664
No 494
>PRK10262 thioredoxin reductase; Provisional
Probab=97.72 E-value=3.2e-05 Score=83.53 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=35.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s 41 (842)
+||+|||||+|||+||..|++.|++|+|+|+ ...||.+..
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~ 46 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTT 46 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceec
Confidence 5899999999999999999999999999996 467886543
No 495
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.72 E-value=3.3e-05 Score=87.65 Aligned_cols=39 Identities=46% Similarity=0.693 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||..
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 689999999999999999999999999999999999864
No 496
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.71 E-value=1.2e-05 Score=75.80 Aligned_cols=67 Identities=34% Similarity=0.526 Sum_probs=49.1
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchh-HHHHHHHcCCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPN-MMEFFESLGVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~-~~~l~~~lGl~~~~~ 78 (842)
||+|||||-+||||||..+++ ..+|.|+|++-.+||-+. .|.+.|+...... ..=+++++|+..+..
T Consensus 78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~EigvpYede 147 (328)
T KOG2960|consen 78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVPYEDE 147 (328)
T ss_pred ceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCCcccC
Confidence 899999999999999999966 689999999988998443 4555553222222 234578888875543
No 497
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.70 E-value=3.8e-05 Score=84.23 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=34.4
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~ 38 (842)
||+|||||+|||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999987 9999999999887773
No 498
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.69 E-value=0.00044 Score=66.84 Aligned_cols=103 Identities=29% Similarity=0.407 Sum_probs=74.3
Q ss_pred EEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC--Cc-cC-CCccEEEEcchh
Q 035870 633 VLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ--LA-KA-NKYDRIISCEMI 706 (842)
Q Consensus 633 vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~~-~~fD~i~s~~~~ 706 (842)
++|+|||.|... .+++... ..++++|+++.+++.++......+.. .+.+...|... ++ .. ..||.+.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3444322 48999999999999965554332111 16888888776 55 33 489999444444
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4443 688999999999999999997766543
No 499
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.0005 Score=75.07 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
||||||||.||+-||+..++.|.+++++=-+
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 8999999999999999999999999988654
No 500
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.67 E-value=0.00084 Score=72.68 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=53.1
Q ss_pred CceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC-cEEeCCEEEEccChHHHH
Q 035870 205 PQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG-SREFYNSCVMALHAPDAL 273 (842)
Q Consensus 205 ~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VV~A~p~~~~~ 273 (842)
+..|....-.+.+++.|...+++.|++|+++++|++| +++++.|.+.++ ++++||.||+|+......
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWS 143 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcccc
Confidence 3344446778899999999999999999999999999 344577877543 469999999999865443
Done!