BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035871
(1127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI-RH 872
R AA A G I P+ SQ ++ + + + DP V VR TA+W + IC+ +
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442
Query: 873 CIDDFAFKP 881
I+D P
Sbjct: 443 AINDVYLAP 451
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI-RH 872
R AA A G I P+ SQ ++ + + + DP V VR TA+W + IC+ +
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442
Query: 873 CIDDFAFKP 881
I+D P
Sbjct: 443 AINDVYLAP 451
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI-RH 872
R AA A G I P+ SQ ++ + + + DP V VR TA+W + IC+ +
Sbjct: 258 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 317
Query: 873 CIDDFAFKP 881
I+D P
Sbjct: 318 AINDVYLAP 326
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI-RH 872
R AA A G I P+ SQ ++ + + + DP V VR TA+W + IC+ +
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442
Query: 873 CIDDFAFKP 881
I+D P
Sbjct: 443 AINDVYLAP 451
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI-RH 872
R AA A G I P+ SQ ++ + + + DP V VR TA+W + IC+ +
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442
Query: 873 CIDDFAFKP 881
I+D P
Sbjct: 443 AINDVYLAP 451
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868
R AA A G I P+ SQ ++ + + + DP V VR TA+W + IC+
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 784 SVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843
++ + LKET E I L +AL++ V + C+A+G+I + E+ + H
Sbjct: 287 NIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLI------QEDEELSKYYYHG 340
Query: 844 VE----INTHD 850
V ++THD
Sbjct: 341 VSHFLGLDTHD 351
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI-RH 872
R AA A G I P+ +Q ++ + + + DP V VR T +W + IC+ +
Sbjct: 383 RDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLPEA 442
Query: 873 CIDDFAFKP 881
I+D P
Sbjct: 443 AINDVYLAP 451
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 1022 KSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFKVLCSSLGESTTHL 1081
K+ +V + LE I ++L + A S + V +Q S L++ ++ + ES
Sbjct: 48 KAIREVQKPLEDITDSLKIAGVKALDSVERNV---RQASRTLQQGKSIIVAGFAES---- 100
Query: 1082 ENENNSVGNQKKEMISKAIRSLIEVYEGRKQFAVAKK 1118
GN+ E + ++ ++++ E RK+ AVA K
Sbjct: 101 ---KKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPK 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,971,479
Number of Sequences: 62578
Number of extensions: 1082388
Number of successful extensions: 2646
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2636
Number of HSP's gapped (non-prelim): 16
length of query: 1127
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1018
effective length of database: 8,152,335
effective search space: 8299077030
effective search space used: 8299077030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)