Query 035871
Match_columns 1127
No_of_seqs 156 out of 178
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4535 HEAT and armadillo rep 100.0 1E-107 3E-112 910.7 36.7 616 383-1082 2-687 (728)
2 PF13251 DUF4042: Domain of un 100.0 1.7E-45 3.6E-50 382.8 16.1 181 392-581 1-182 (182)
3 KOG4535 HEAT and armadillo rep 99.9 2.5E-22 5.5E-27 227.1 17.6 382 618-1059 289-682 (728)
4 KOG2171 Karyopherin (importin) 99.7 7.8E-16 1.7E-20 190.2 26.9 447 391-956 51-529 (1075)
5 PRK09687 putative lyase; Provi 99.7 5E-16 1.1E-20 173.1 18.7 206 758-1037 27-234 (280)
6 PRK09687 putative lyase; Provi 99.6 5.6E-15 1.2E-19 164.8 20.4 203 760-1037 60-263 (280)
7 PRK13800 putative oxidoreducta 99.3 1.2E-11 2.7E-16 157.5 17.4 193 758-1037 688-881 (897)
8 PLN03200 cellulose synthase-in 99.3 2.1E-09 4.5E-14 142.7 34.8 224 758-1015 450-679 (2102)
9 PRK13800 putative oxidoreducta 99.3 5.1E-11 1.1E-15 152.0 16.2 177 758-1012 718-895 (897)
10 KOG1241 Karyopherin (importin) 99.1 1.1E-07 2.4E-12 114.8 31.1 464 390-975 50-533 (859)
11 COG1413 FOG: HEAT repeat [Ener 99.1 4.4E-09 9.6E-14 119.2 18.8 194 759-1037 48-255 (335)
12 KOG2171 Karyopherin (importin) 98.8 2.2E-05 4.7E-10 99.3 38.6 604 392-1124 133-847 (1075)
13 COG1413 FOG: HEAT repeat [Ener 98.8 1.2E-07 2.6E-12 107.6 16.2 178 759-1012 79-269 (335)
14 TIGR02270 conserved hypothetic 98.8 1.6E-07 3.4E-12 110.5 17.1 173 759-1012 91-263 (410)
15 PLN03200 cellulose synthase-in 98.7 8.1E-08 1.8E-12 128.0 13.3 228 758-1013 492-761 (2102)
16 TIGR02270 conserved hypothetic 98.6 4.2E-07 9E-12 106.9 15.5 175 758-1015 121-295 (410)
17 PF13646 HEAT_2: HEAT repeats; 98.6 1.2E-07 2.7E-12 86.4 7.6 78 904-1012 10-88 (88)
18 KOG0166 Karyopherin (importin) 98.5 9.7E-07 2.1E-11 105.0 14.2 231 760-1015 72-307 (514)
19 PF01602 Adaptin_N: Adaptin N 98.4 5.7E-05 1.2E-09 90.6 26.7 368 495-1026 80-448 (526)
20 KOG1241 Karyopherin (importin) 98.4 0.00013 2.8E-09 89.2 28.6 285 763-1058 373-753 (859)
21 KOG0166 Karyopherin (importin) 98.4 2.3E-06 5.1E-11 101.8 13.1 223 765-1015 121-350 (514)
22 KOG2023 Nuclear transport rece 98.3 0.0028 6.1E-08 76.8 36.9 149 801-996 666-817 (885)
23 KOG1824 TATA-binding protein-i 98.3 0.028 6E-07 70.8 47.3 519 371-1063 334-909 (1233)
24 PF13646 HEAT_2: HEAT repeats; 98.3 3E-06 6.5E-11 77.3 9.2 81 761-864 6-88 (88)
25 PF01602 Adaptin_N: Adaptin N 98.1 3.3E-05 7.2E-10 92.6 15.3 100 752-866 78-179 (526)
26 KOG2259 Uncharacterized conser 98.1 0.00014 3.1E-09 87.5 19.8 226 759-1012 203-471 (823)
27 PF13513 HEAT_EZ: HEAT-like re 98.1 3.3E-06 7.2E-11 71.5 4.5 55 811-866 1-55 (55)
28 KOG1824 TATA-binding protein-i 98.1 0.085 1.8E-06 66.7 42.8 504 386-1011 487-1067(1233)
29 COG5215 KAP95 Karyopherin (imp 98.0 0.0071 1.5E-07 72.5 30.4 452 392-971 56-528 (858)
30 KOG2023 Nuclear transport rece 98.0 0.0076 1.7E-07 73.3 30.1 162 772-970 376-547 (885)
31 cd00020 ARM Armadillo/beta-cat 98.0 1.2E-05 2.6E-10 76.2 5.7 108 759-868 12-120 (120)
32 PTZ00429 beta-adaptin; Provisi 97.9 0.0029 6.3E-08 79.9 26.9 204 762-1012 76-281 (746)
33 PF13513 HEAT_EZ: HEAT-like re 97.8 1.2E-05 2.6E-10 68.1 3.3 54 908-970 2-55 (55)
34 KOG4224 Armadillo repeat prote 97.8 3.5E-05 7.6E-10 87.4 7.5 235 758-1015 171-445 (550)
35 KOG4224 Armadillo repeat prote 97.8 5.8E-05 1.3E-09 85.7 8.3 211 771-1021 64-285 (550)
36 cd00020 ARM Armadillo/beta-cat 97.7 4.6E-05 9.9E-10 72.2 5.2 104 803-921 13-119 (120)
37 KOG0915 Uncharacterized conser 97.6 0.05 1.1E-06 71.5 30.7 492 392-1076 972-1481(1702)
38 KOG0567 HEAT repeat-containing 97.5 0.0033 7.1E-08 69.7 16.0 223 762-1038 44-278 (289)
39 KOG0213 Splicing factor 3b, su 97.5 0.13 2.7E-06 63.8 30.2 226 761-1011 806-1060(1172)
40 KOG2259 Uncharacterized conser 97.4 0.0019 4.1E-08 78.3 14.9 244 765-1038 169-458 (823)
41 COG5064 SRP1 Karyopherin (impo 97.4 0.0012 2.6E-08 74.9 11.9 222 760-1014 163-396 (526)
42 PF04826 Arm_2: Armadillo-like 97.3 0.0019 4.1E-08 72.1 12.2 162 808-996 24-185 (254)
43 PF10508 Proteasom_PSMB: Prote 97.3 0.0031 6.8E-08 76.7 15.0 228 758-1016 81-319 (503)
44 COG5181 HSH155 U2 snRNP splice 97.2 0.077 1.7E-06 64.4 24.6 244 753-1037 521-776 (975)
45 PF12717 Cnd1: non-SMC mitotic 97.2 0.0012 2.6E-08 69.4 8.5 91 906-1015 1-91 (178)
46 COG5215 KAP95 Karyopherin (imp 97.2 1 2.2E-05 54.9 33.4 137 392-573 109-250 (858)
47 PTZ00429 beta-adaptin; Provisi 97.1 0.044 9.6E-07 69.6 23.0 163 807-1014 42-206 (746)
48 KOG0213 Splicing factor 3b, su 97.1 0.24 5.2E-06 61.5 27.2 246 753-1037 716-971 (1172)
49 PF12348 CLASP_N: CLASP N term 97.0 0.03 6.5E-07 60.4 16.8 106 761-872 101-210 (228)
50 KOG1242 Protein containing ada 96.9 0.26 5.5E-06 60.4 25.5 283 617-1009 269-557 (569)
51 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0012 2.6E-08 63.4 4.7 66 940-1008 24-89 (97)
52 KOG2062 26S proteasome regulat 96.8 0.011 2.4E-07 72.7 13.0 184 752-981 517-708 (929)
53 COG5116 RPN2 26S proteasome re 96.8 0.0071 1.5E-07 72.3 10.7 190 749-981 511-705 (926)
54 PF10508 Proteasom_PSMB: Prote 96.8 0.11 2.5E-06 63.3 21.5 235 759-1012 165-416 (503)
55 KOG1293 Proteins containing ar 96.6 0.6 1.3E-05 57.7 25.4 157 749-921 372-532 (678)
56 COG5064 SRP1 Karyopherin (impo 96.6 0.014 3E-07 66.6 11.0 184 801-1015 161-355 (526)
57 PF12348 CLASP_N: CLASP N term 96.6 0.026 5.6E-07 60.9 12.8 178 806-1012 16-202 (228)
58 PF01347 Vitellogenin_N: Lipop 96.5 0.052 1.1E-06 67.3 16.5 232 767-1068 377-618 (618)
59 KOG1943 Beta-tubulin folding c 96.5 0.38 8.3E-06 62.0 23.7 311 753-1116 341-716 (1133)
60 COG5096 Vesicle coat complex, 96.4 0.078 1.7E-06 66.8 17.0 180 792-1012 88-270 (757)
61 KOG1020 Sister chromatid cohes 96.3 1.7 3.7E-05 58.1 28.2 141 759-926 821-963 (1692)
62 COG5096 Vesicle coat complex, 96.3 0.044 9.5E-07 69.0 14.0 103 890-1014 88-193 (757)
63 PF05004 IFRD: Interferon-rela 96.1 0.15 3.3E-06 58.6 16.4 197 755-971 45-256 (309)
64 KOG4653 Uncharacterized conser 96.1 0.23 4.9E-06 62.6 18.5 217 762-1012 735-960 (982)
65 KOG1062 Vesicle coat complex A 96.1 1.8 3.9E-05 54.7 25.8 124 490-636 138-268 (866)
66 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.016 3.5E-07 55.7 6.6 94 854-971 1-95 (97)
67 KOG4653 Uncharacterized conser 96.0 0.074 1.6E-06 66.7 13.7 171 804-1012 734-914 (982)
68 PF12717 Cnd1: non-SMC mitotic 96.0 0.13 2.7E-06 54.3 13.8 91 810-922 1-92 (178)
69 smart00638 LPD_N Lipoprotein N 95.9 0.56 1.2E-05 58.0 21.1 210 768-1037 340-559 (574)
70 PF05004 IFRD: Interferon-rela 95.9 0.73 1.6E-05 53.1 20.6 111 757-871 132-260 (309)
71 KOG1242 Protein containing ada 95.8 0.3 6.6E-06 59.8 17.8 251 762-1037 224-503 (569)
72 KOG1991 Nuclear transport rece 95.7 10 0.00022 49.3 31.4 177 768-970 432-619 (1010)
73 COG5240 SEC21 Vesicle coat com 95.7 2.4 5.3E-05 51.8 23.8 60 904-974 498-557 (898)
74 KOG1943 Beta-tubulin folding c 95.6 9.9 0.00022 49.8 30.1 428 489-1015 336-836 (1133)
75 KOG1059 Vesicle coat complex A 95.5 6.9 0.00015 49.3 27.1 156 437-652 187-345 (877)
76 KOG0211 Protein phosphatase 2A 95.5 12 0.00026 48.2 33.1 264 764-1073 408-693 (759)
77 COG5181 HSH155 U2 snRNP splice 95.1 4.3 9.3E-05 50.2 23.2 262 751-1067 602-868 (975)
78 PF02985 HEAT: HEAT repeat; I 95.0 0.018 3.9E-07 43.7 2.3 29 841-869 2-30 (31)
79 PF12460 MMS19_C: RNAPII trans 94.8 0.86 1.9E-05 54.3 17.1 191 800-1012 193-390 (415)
80 PF13251 DUF4042: Domain of un 94.2 0.37 8E-06 51.6 10.9 168 618-825 2-173 (182)
81 KOG1248 Uncharacterized conser 94.2 17 0.00037 48.2 27.1 229 753-1008 696-933 (1176)
82 KOG0567 HEAT repeat-containing 93.9 0.16 3.5E-06 56.8 7.6 85 759-865 192-277 (289)
83 PF00514 Arm: Armadillo/beta-c 93.8 0.05 1.1E-06 43.6 2.7 30 839-868 12-41 (41)
84 KOG1058 Vesicle coat complex C 93.7 0.74 1.6E-05 57.6 13.3 226 806-1062 108-386 (948)
85 PF02985 HEAT: HEAT repeat; I 93.5 0.057 1.2E-06 41.0 2.4 29 944-972 1-29 (31)
86 KOG2062 26S proteasome regulat 93.4 0.31 6.6E-06 60.7 9.5 100 752-867 553-652 (929)
87 PF04826 Arm_2: Armadillo-like 93.4 1.3 2.9E-05 49.7 14.0 140 761-921 19-162 (254)
88 KOG1062 Vesicle coat complex A 92.9 37 0.00081 43.6 32.4 206 764-1037 304-524 (866)
89 COG5116 RPN2 26S proteasome re 92.8 0.27 5.8E-06 59.6 7.5 100 753-868 551-650 (926)
90 COG5240 SEC21 Vesicle coat com 92.7 5.6 0.00012 48.9 18.1 67 794-869 489-556 (898)
91 KOG1248 Uncharacterized conser 92.6 48 0.001 44.3 30.5 146 391-577 109-257 (1176)
92 KOG4413 26S proteasome regulat 91.9 9.6 0.00021 44.3 17.9 169 440-652 91-264 (524)
93 KOG2025 Chromosome condensatio 91.5 3.9 8.4E-05 51.3 15.3 110 891-1015 82-192 (892)
94 PF12719 Cnd3: Nuclear condens 91.4 1.2 2.6E-05 50.7 10.6 109 753-867 26-142 (298)
95 PF12460 MMS19_C: RNAPII trans 91.0 3.3 7.1E-05 49.5 14.2 217 753-994 189-414 (415)
96 KOG1059 Vesicle coat complex A 90.9 11 0.00024 47.6 18.3 237 761-1058 151-395 (877)
97 KOG1061 Vesicle coat complex A 90.3 1.5 3.2E-05 55.2 10.6 108 793-923 83-190 (734)
98 KOG0211 Protein phosphatase 2A 90.3 4.9 0.00011 51.6 15.3 218 761-1015 444-663 (759)
99 KOG0212 Uncharacterized conser 90.1 9.4 0.0002 47.1 16.6 156 832-1012 77-233 (675)
100 PF14500 MMS19_N: Dos2-interac 89.7 5.4 0.00012 45.1 13.7 120 496-648 125-255 (262)
101 KOG2160 Armadillo/beta-catenin 89.2 0.84 1.8E-05 53.1 6.9 147 846-1013 131-279 (342)
102 PF03130 HEAT_PBS: PBS lyase H 89.1 0.35 7.6E-06 35.8 2.5 27 959-997 1-27 (27)
103 KOG1061 Vesicle coat complex A 88.7 3.4 7.3E-05 52.2 12.0 97 761-869 93-190 (734)
104 KOG1240 Protein kinase contain 88.4 7.9 0.00017 51.2 15.1 199 793-1012 459-681 (1431)
105 KOG0212 Uncharacterized conser 88.4 78 0.0017 39.6 27.5 220 762-1012 175-402 (675)
106 KOG2956 CLIP-associating prote 88.2 32 0.00069 41.9 18.8 189 603-871 288-480 (516)
107 KOG0915 Uncharacterized conser 87.9 9.7 0.00021 51.5 15.6 235 749-1012 1035-1302(1702)
108 PF03130 HEAT_PBS: PBS lyase H 87.7 0.48 1E-05 35.1 2.5 27 909-954 1-27 (27)
109 KOG1060 Vesicle coat complex A 87.6 2.8 6.2E-05 52.9 10.3 99 758-869 112-210 (968)
110 PF12719 Cnd3: Nuclear condens 87.5 6 0.00013 45.1 12.5 114 797-921 27-142 (298)
111 PF05918 API5: Apoptosis inhib 86.6 4 8.6E-05 50.6 10.8 140 895-1069 24-163 (556)
112 KOG2032 Uncharacterized conser 86.2 8.8 0.00019 46.7 13.0 106 761-870 265-373 (533)
113 PF05918 API5: Apoptosis inhib 85.9 7.8 0.00017 48.2 12.8 76 785-867 49-124 (556)
114 PF00514 Arm: Armadillo/beta-c 85.3 0.72 1.6E-05 36.9 2.5 30 942-971 11-40 (41)
115 KOG1240 Protein kinase contain 84.7 42 0.00091 45.0 18.6 103 752-861 615-718 (1431)
116 COG5098 Chromosome condensatio 84.7 34 0.00073 43.4 17.0 105 758-866 303-413 (1128)
117 KOG1078 Vesicle coat complex C 84.7 19 0.00041 46.0 15.2 61 804-869 473-533 (865)
118 KOG1060 Vesicle coat complex A 83.8 38 0.00082 43.5 17.2 93 803-920 114-207 (968)
119 KOG2160 Armadillo/beta-catenin 83.6 5.9 0.00013 46.3 9.8 156 749-926 124-286 (342)
120 KOG1820 Microtubule-associated 83.5 11 0.00024 48.9 13.1 196 786-1014 242-441 (815)
121 KOG1293 Proteins containing ar 81.8 70 0.0015 40.5 18.3 188 387-585 191-424 (678)
122 PF14500 MMS19_N: Dos2-interac 81.1 1.1E+02 0.0023 34.9 18.5 145 503-692 8-153 (262)
123 PF08506 Cse1: Cse1; InterPro 80.8 1.1E+02 0.0025 36.4 19.3 59 758-821 310-370 (370)
124 KOG1517 Guanine nucleotide bin 78.7 7.1 0.00015 50.9 8.8 103 761-868 606-732 (1387)
125 KOG1949 Uncharacterized conser 78.5 56 0.0012 41.7 15.9 190 753-976 129-335 (1005)
126 KOG1949 Uncharacterized conser 78.2 4.6 9.9E-05 50.6 6.8 108 759-869 225-332 (1005)
127 PF11865 DUF3385: Domain of un 78.0 7.4 0.00016 40.8 7.6 108 889-1000 9-142 (160)
128 smart00567 EZ_HEAT E-Z type HE 77.3 2.4 5.1E-05 31.7 2.7 28 958-997 2-29 (30)
129 KOG0414 Chromosome condensatio 76.9 8.4 0.00018 50.9 8.9 152 808-999 934-1105(1251)
130 smart00185 ARM Armadillo/beta- 76.9 1.9 4E-05 33.6 2.1 28 944-971 13-40 (41)
131 smart00185 ARM Armadillo/beta- 76.7 1.7 3.7E-05 33.8 1.9 29 840-868 13-41 (41)
132 PF01347 Vitellogenin_N: Lipop 76.4 11 0.00025 46.9 9.9 116 904-1037 446-569 (618)
133 PF12231 Rif1_N: Rap1-interact 75.6 1.8E+02 0.0039 34.6 27.7 123 508-651 59-183 (372)
134 KOG1078 Vesicle coat complex C 74.7 82 0.0018 40.7 16.2 216 761-1013 252-492 (865)
135 PF05536 Neurochondrin: Neuroc 74.1 32 0.0007 42.9 12.8 177 811-1007 71-252 (543)
136 PF12074 DUF3554: Domain of un 73.6 99 0.0021 35.9 16.0 250 752-1038 21-287 (339)
137 smart00567 EZ_HEAT E-Z type HE 73.4 4.6 9.9E-05 30.2 3.4 29 812-851 2-30 (30)
138 smart00638 LPD_N Lipoprotein N 72.6 26 0.00056 43.5 11.7 149 809-1005 409-567 (574)
139 PF10363 DUF2435: Protein of u 71.8 20 0.00043 34.4 8.1 64 804-869 10-73 (92)
140 PF08167 RIX1: rRNA processing 71.0 40 0.00086 35.4 10.9 144 490-652 21-164 (165)
141 KOG2025 Chromosome condensatio 71.0 22 0.00047 45.1 10.0 115 826-970 72-188 (892)
142 PF03224 V-ATPase_H_N: V-ATPas 69.7 37 0.0008 39.0 11.3 181 840-1042 106-295 (312)
143 KOG1991 Nuclear transport rece 69.7 38 0.00083 44.4 12.1 98 905-1012 430-528 (1010)
144 PF10363 DUF2435: Protein of u 68.6 31 0.00067 33.2 8.6 83 898-999 7-90 (92)
145 KOG2274 Predicted importin 9 [ 66.1 78 0.0017 41.4 13.6 143 393-575 546-691 (1005)
146 KOG1820 Microtubule-associated 65.7 1.3E+02 0.0029 39.5 15.9 145 601-825 294-442 (815)
147 KOG0414 Chromosome condensatio 65.6 13 0.00029 49.1 7.1 92 765-867 934-1026(1251)
148 PLN03076 ARF guanine nucleotid 62.4 50 0.0011 46.7 12.0 134 83-246 1361-1513(1780)
149 KOG1058 Vesicle coat complex C 59.6 24 0.00052 45.0 7.5 55 904-973 110-164 (948)
150 PF12074 DUF3554: Domain of un 58.0 3.6E+02 0.0077 31.4 17.1 87 771-868 4-90 (339)
151 KOG2973 Uncharacterized conser 55.7 34 0.00073 39.8 7.3 67 760-830 9-75 (353)
152 KOG4199 Uncharacterized conser 54.1 4.6E+02 0.0099 31.4 18.3 65 957-1030 388-454 (461)
153 KOG0413 Uncharacterized conser 53.2 24 0.00051 46.1 6.1 123 853-1012 945-1069(1529)
154 COG5218 YCG1 Chromosome conden 51.9 4.9E+02 0.011 33.3 16.3 75 832-920 84-159 (885)
155 PF05804 KAP: Kinesin-associat 51.7 53 0.0012 42.3 9.0 176 772-974 267-443 (708)
156 PF12612 TFCD_C: Tubulin foldi 51.6 95 0.0021 33.3 9.8 90 939-1036 3-112 (193)
157 KOG1967 DNA repair/transcripti 51.3 31 0.00067 44.9 6.7 106 755-862 907-1018(1030)
158 KOG2973 Uncharacterized conser 51.0 40 0.00086 39.3 6.9 105 842-975 6-114 (353)
159 KOG2933 Uncharacterized conser 47.5 84 0.0018 36.7 8.8 93 761-865 136-231 (334)
160 PF01851 PC_rep: Proteasome/cy 47.3 26 0.00056 27.7 3.5 35 962-1004 1-35 (35)
161 KOG0392 SNF2 family DNA-depend 47.1 3E+02 0.0064 37.8 14.4 136 758-904 817-962 (1549)
162 PF11864 DUF3384: Domain of un 47.0 6.3E+02 0.014 31.0 30.3 188 815-1038 195-386 (464)
163 KOG2122 Beta-catenin-binding p 45.8 3.7E+02 0.008 37.7 14.9 68 942-1012 529-597 (2195)
164 cd00256 VATPase_H VATPase_H, r 45.3 6.7E+02 0.015 30.8 20.0 121 431-577 54-177 (429)
165 PF08167 RIX1: rRNA processing 44.7 49 0.0011 34.7 6.2 92 941-1036 23-126 (165)
166 KOG0168 Putative ubiquitin fus 44.1 2.2E+02 0.0047 37.5 12.2 200 801-1025 172-374 (1051)
167 KOG0946 ER-Golgi vesicle-tethe 43.2 3.1E+02 0.0067 35.9 13.3 104 560-692 138-241 (970)
168 PF12830 Nipped-B_C: Sister ch 42.3 67 0.0014 34.4 6.8 63 802-869 13-75 (187)
169 KOG0891 DNA-dependent protein 42.1 2.8E+02 0.0061 40.7 14.2 233 750-1015 525-762 (2341)
170 PF12765 Cohesin_HEAT: HEAT re 40.9 23 0.0005 29.1 2.4 37 819-859 1-38 (42)
171 PF12830 Nipped-B_C: Sister ch 40.7 41 0.00089 36.0 4.9 66 749-825 8-73 (187)
172 COG5098 Chromosome condensatio 40.5 1.5E+02 0.0032 38.1 9.9 101 804-921 306-414 (1128)
173 PF05804 KAP: Kinesin-associat 40.2 1.3E+02 0.0029 38.9 10.0 178 807-1012 260-437 (708)
174 COG5218 YCG1 Chromosome conden 39.8 82 0.0018 39.5 7.6 90 938-1036 86-179 (885)
175 PF04869 Uso1_p115_head: Uso1 39.2 51 0.0011 38.5 5.7 129 390-527 51-188 (312)
176 KOG1967 DNA repair/transcripti 38.9 1.8E+02 0.004 38.4 10.6 148 753-920 863-1022(1030)
177 KOG0392 SNF2 family DNA-depend 38.6 2E+02 0.0043 39.3 11.1 108 803-928 822-931 (1549)
178 PF06025 DUF913: Domain of Unk 34.2 6.2E+02 0.013 30.4 13.8 145 510-657 75-258 (379)
179 KOG1517 Guanine nucleotide bin 33.2 1.7E+02 0.0036 39.3 9.1 146 812-971 572-731 (1387)
180 cd08050 TAF6 TATA Binding Prot 32.9 5.5E+02 0.012 30.3 12.9 201 750-972 120-340 (343)
181 PF10521 DUF2454: Protein of u 32.4 6E+02 0.013 29.0 12.9 89 407-527 108-206 (282)
182 KOG2274 Predicted importin 9 [ 32.3 5E+02 0.011 34.6 12.9 149 795-973 4-158 (1005)
183 PF10521 DUF2454: Protein of u 32.3 6.5E+02 0.014 28.7 13.1 77 498-575 123-205 (282)
184 KOG1020 Sister chromatid cohes 32.1 1.7E+03 0.037 31.7 34.2 125 498-659 819-944 (1692)
185 KOG4835 DNA-binding protein C1 31.8 67 0.0014 33.5 4.5 78 228-313 3-80 (144)
186 KOG1822 Uncharacterized conser 31.0 1.9E+03 0.042 32.0 30.7 115 410-534 589-704 (2067)
187 PF11935 DUF3453: Domain of un 30.7 8E+02 0.017 27.4 14.5 64 763-826 2-72 (239)
188 KOG2933 Uncharacterized conser 30.4 3.8E+02 0.0082 31.6 10.5 103 837-967 127-229 (334)
189 KOG0413 Uncharacterized conser 30.3 1.2E+02 0.0026 40.2 7.1 185 800-1009 475-678 (1529)
190 PF12054 DUF3535: Domain of un 30.2 1.1E+03 0.024 28.9 16.9 57 943-1001 312-369 (441)
191 KOG1048 Neural adherens juncti 30.0 4.9E+02 0.011 33.9 12.3 254 762-1040 241-595 (717)
192 KOG1993 Nuclear transport rece 28.2 1.6E+03 0.034 30.0 22.7 308 435-855 530-870 (978)
193 KOG2032 Uncharacterized conser 27.8 2.3E+02 0.005 35.1 8.6 148 837-1012 256-412 (533)
194 KOG2842 Interferon-related pro 27.3 3.5E+02 0.0075 32.8 9.7 56 388-459 71-131 (427)
195 PF08713 DNA_alkylation: DNA a 27.0 1.2E+02 0.0025 32.4 5.6 62 801-869 124-185 (213)
196 KOG3682 Predicted membrane pro 26.5 3.9E+02 0.0086 34.4 10.4 203 61-296 561-778 (930)
197 PF12333 Ipi1_N: Rix1 complex 25.5 92 0.002 30.3 4.1 40 616-655 25-65 (102)
198 KOG1077 Vesicle coat complex A 25.4 1.7E+03 0.036 29.4 25.2 80 763-869 319-399 (938)
199 PF06786 UPF0253: Uncharacteri 25.3 41 0.00089 30.2 1.5 36 832-867 18-59 (66)
200 PF12530 DUF3730: Protein of u 25.3 9.6E+02 0.021 26.6 14.9 207 764-1011 11-234 (234)
201 PF11841 DUF3361: Domain of un 25.2 4.1E+02 0.0089 28.4 9.0 115 496-635 13-135 (160)
202 PF11698 V-ATPase_H_C: V-ATPas 24.7 93 0.002 31.5 4.0 57 807-866 54-113 (119)
203 PLN03076 ARF guanine nucleotid 24.4 2.4E+03 0.053 31.0 23.3 50 774-825 1439-1488(1780)
204 KOG0168 Putative ubiquitin fus 23.9 4.4E+02 0.0095 34.9 10.3 40 489-528 206-245 (1051)
205 PF12531 DUF3731: DNA-K relate 23.5 6.2E+02 0.013 29.0 10.5 78 838-927 117-194 (249)
206 KOG1848 Uncharacterized conser 23.3 4.4E+02 0.0095 36.7 10.5 132 157-298 801-938 (1610)
207 PRK04964 hypothetical protein; 22.9 58 0.0013 29.4 1.9 36 832-867 18-59 (66)
208 PF12765 Cohesin_HEAT: HEAT re 22.1 84 0.0018 25.9 2.6 20 802-821 23-42 (42)
209 cd06561 AlkD_like A new struct 21.6 1.6E+02 0.0035 30.9 5.4 63 801-869 109-171 (197)
210 PF07571 DUF1546: Protein of u 21.6 2.3E+02 0.005 27.1 5.9 66 850-949 17-85 (92)
211 PLN00061 photosystem II protei 21.4 9.6E+02 0.021 25.4 10.5 99 985-1111 30-129 (150)
212 PF14961 BROMI: Broad-minded p 21.3 3.4E+02 0.0073 37.2 8.9 118 391-549 176-316 (1296)
213 PF11698 V-ATPase_H_C: V-ATPas 20.4 2.8E+02 0.006 28.2 6.4 63 758-825 47-114 (119)
214 KOG1048 Neural adherens juncti 20.0 3.7E+02 0.0081 34.9 8.8 103 904-1015 244-348 (717)
No 1
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-107 Score=910.67 Aligned_cols=616 Identities=25% Similarity=0.377 Sum_probs=528.4
Q ss_pred CccchhhhhhhHHHHHHHHHHHHhh-CCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcC
Q 035871 383 KDTDSVQSSKVRVAALVCLQDLCRA-DPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDG 461 (1127)
Q Consensus 383 ~~~~r~~~skVR~~AL~~L~al~k~-~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~g 461 (1127)
+.+.|++++|||++||+|+.++++. .+|.|||||+.||||++.++ +|+||+.-|+||++|+|+.|+|++++||+|
T Consensus 2 ~~~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g----~p~l~~l~lkd~~~~~ra~alqv~~~~l~g 77 (728)
T KOG4535|consen 2 QSKMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG----SPSLMTLTLKDPSPKTRACALQVLSAILEG 77 (728)
T ss_pred CcchhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC----CceeeEEecCCCChhHHHHHHHHHHHHHHh
Confidence 4678999999999999999999987 55789999999999999875 579999999999999999999999999999
Q ss_pred CchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHH
Q 035871 462 PSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLII 541 (1127)
Q Consensus 462 sk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~ 541 (1127)
+|.|+.+ ||+. +..+||||+++||..|+++||+|+.+|.+|++++++||++|||++||++||||||+-+|+.++|.
T Consensus 78 sk~fls~-a~~~---~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~ 153 (728)
T KOG4535|consen 78 SKQFLSV-AEDT---SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWN 153 (728)
T ss_pred hHHHHHH-Hhcc---CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 9887665 7754 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcC----------------------------C
Q 035871 542 SLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAG----------------------------S 593 (1127)
Q Consensus 542 ~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg----------------------------~ 593 (1127)
+++++|++.+++ ++|.+|..+++++++..++|||+.+++.+.++. .
T Consensus 154 ~ik~~i~~~d~~------v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~ 227 (728)
T KOG4535|consen 154 QIKPYIRHKDVN------VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSS 227 (728)
T ss_pred HHHHHhhcCCCC------hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCC
Confidence 999999865543 789999999999999999999998876533311 1
Q ss_pred C------------------CCCCcchhHHHHHhhhhcC-CCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHh
Q 035871 594 V------------------EVDKRSGVLFTLLQCSERL-ASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKA 654 (1127)
Q Consensus 594 ~------------------~~~~~s~~L~~Ll~~~~~~-~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~ 654 (1127)
+ ..+.+||.+.+..+..++. .++++|+||+|||.++++|+ ++.+.|+.++..+++..+.+
T Consensus 228 ~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~~~~l~RvI~~~~~~ 306 (728)
T KOG4535|consen 228 PKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAYLMELGRVICKCMGE 306 (728)
T ss_pred ccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCC
Confidence 0 0123445555556655443 24689999999999999987 67788999999999988643
Q ss_pred hCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccch
Q 035871 655 ASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESS 734 (1127)
Q Consensus 655 ~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~ 734 (1127)
.. ++ +.+++.+++++.+-... .+ |.++++
T Consensus 307 ~~-------------p~-------~~l~~a~ll~~lg~~lv----~~---------------------------~~P~~~ 335 (728)
T KOG4535|consen 307 AD-------------PS-------IQLHGAKLLEELGTGLI----QQ---------------------------YKPDST 335 (728)
T ss_pred CC-------------hH-------HHHHHHHHHHHHHHHHh----hh---------------------------cCCCcc
Confidence 22 23 34566777787643221 11 222222
Q ss_pred hhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhH
Q 035871 735 EDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASV 813 (1127)
Q Consensus 735 ~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~V 813 (1127)
.. + .+. --||..++.+..|....|+. ++..+++|+++++|+++.|+.||+++|..++..+ .|+-+.++..|
T Consensus 336 k~-----~-~q~-~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl-~GC~d~~~~lv 407 (728)
T KOG4535|consen 336 KA-----P-DQR-APFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFL-LGCNDSKNRLV 407 (728)
T ss_pred cc-----h-hhh-ccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHH-hcccchHHHHH
Confidence 11 1 111 24999999999999999985 8899999999999999999999999999998754 35444488999
Q ss_pred HHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHH
Q 035871 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMA 893 (1127)
Q Consensus 814 RaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~ 893 (1127)
|++|.|++|+||++|+++.|..|++++.++++..+.|+..++|+||+|+||||+|+|..++- ...+..++++..+|.
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~P---s~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMP---TPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCC---CchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998763 222345688899999
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-ccCCccchhhHHHHHHhhhc
Q 035871 894 SLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 894 ~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~ 972 (1127)
++++.|.++..|+||||.||+|||||++++++.-. .+++....|..+.+|+.++ ..++||||||||||+||+|+
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~-----~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIE-----KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhh-----hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 99999999999999999999999999999999421 1255667889999999998 56899999999999999999
Q ss_pred cccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhh
Q 035871 973 NETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYR 1052 (1127)
Q Consensus 973 n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyr 1052 (1127)
|+++++.+++|++++|++||.+|++|+||||||+||.||.+|++|++||.+|+-.|++++++|.. ++...+|.||+|+
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aLi~--s~~~v~f~eY~~~ 637 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTALQK--SEDTIDFLEYKYC 637 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 6889999999999
Q ss_pred HHHHHH-------------------HHHHHH-HHHHHHhhcccccccccc
Q 035871 1053 VALQKQ-------------------KSSFLE-EWFKVLCSSLGESTTHLE 1082 (1127)
Q Consensus 1053 d~L~~Q-------------------~~~~l~-~~l~~~~~~~~~~~~~~~ 1082 (1127)
|+|++| .|+.|| +.|+...+.|++|+.++.
T Consensus 638 Dsl~~q~c~av~hll~la~SsdLp~mRETle~~~f~~~~a~~~~V~~~~~ 687 (728)
T KOG4535|consen 638 DSLRTQICQALIHLLSLASSSDLPCMRETLELSQFLKSGAEGDDVGAPHS 687 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcchhhccchHHHHHhccccccccCCCC
Confidence 999999 567777 568888889999888665
No 2
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=100.00 E-value=1.7e-45 Score=382.81 Aligned_cols=181 Identities=41% Similarity=0.654 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHHHhh-CCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhh
Q 035871 392 KVRVAALVCLQDLCRA-DPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVA 470 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~-~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~A 470 (1127)
|||++|++||++++|. ++|.+||||+.||||+ ....++.++||+|||++||++|||++|++++++||+|+|+||.+ |
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~-~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~-A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDS-VLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ-A 78 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC-CCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH-H
Confidence 7999999999999999 9999999999999999 33345578999999999999999999999999999999998877 6
Q ss_pred hhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhc
Q 035871 471 EYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEG 550 (1127)
Q Consensus 471 E~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~ 550 (1127)
|+. .++++||||||.+||+||+|+|++|+++|++|+++++++|+|||+++||++|||+||++||++++++++++++.++
T Consensus 79 e~~-~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 79 EES-KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred Hhc-CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 655 3578899999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCChhHH
Q 035871 551 FPLKTDQTGLLVAAISCLTAALSTSPAPVQV 581 (1127)
Q Consensus 551 ~~~~~d~~al~VaaL~cL~avls~~~~~~eV 581 (1127)
+. .++++++.|++++++++++.+||
T Consensus 158 d~------~v~v~~l~~~~~l~s~~~~~~e~ 182 (182)
T PF13251_consen 158 DP------NVRVAALSCLGALLSVQPPLPEV 182 (182)
T ss_pred CC------cHHHHHHHHHHHHHcCCCCCCCC
Confidence 32 27899999999999999999885
No 3
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.5e-22 Score=227.15 Aligned_cols=382 Identities=16% Similarity=0.070 Sum_probs=277.3
Q ss_pred hHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcc
Q 035871 618 ICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGF 697 (1127)
Q Consensus 618 vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~ 697 (1127)
.|.--.|+++.++.+||....++|++....+.++++-...++..+.|+ ..+++.|++++++|
T Consensus 289 ~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k------------------~~~q~~~fw~~~l~ 350 (728)
T KOG4535|consen 289 TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTK------------------APDQRAPFWTMMLN 350 (728)
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCccc------------------chhhhccHHHHHcc
Confidence 455566789999999999999999999999998887665444332221 23558889999999
Q ss_pred cCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchh------hhHHHHHhhHHHHHccCChhHH
Q 035871 698 KGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSE------QWSEMIEKHMPLILQHISSMVR 771 (1127)
Q Consensus 698 ~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~------~W~~iie~~Lp~~l~d~~~~VR 771 (1127)
+|+.+...|++++++|+|+|++.+.+.++|.|+.++.+.- ..++++.|+. +|...+..+..-.|.+....+|
T Consensus 351 ~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T--~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~ 428 (728)
T KOG4535|consen 351 GPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT--LCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV 428 (728)
T ss_pred CCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh--hhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence 9999999999999999999999999999999998752110 1246777877 9999999877666666678899
Q ss_pred HHHHHHHhccchhHHh-hcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCC
Q 035871 772 TAAVTCFAGITSSVFF-SLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHD 850 (1127)
Q Consensus 772 aaAc~cLa~Igs~~f~-~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D 850 (1127)
.-..+|...|....|+ .|..+...++..+.|-.++.|.-|+||++++|+.|+.. ++.+....+.- -
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll------------~~~~~~A~~~~-A 495 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL------------LKMLRSAIEAS-A 495 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH------------HHHHHHHHHhh-h
Confidence 9999999998888887 77777777766667778889999999999999999873 34443333222 2
Q ss_pred CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCC
Q 035871 851 PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSS 930 (1127)
Q Consensus 851 ~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~ 930 (1127)
.+..||-+|-.||||+..-+..-. +..+. ++-+..+.+++.+. .++.+.||||||+.|+|||.+
T Consensus 496 d~dkV~~navraLgnllQvlq~i~-~~~~~-----e~~~~~~~~l~~~v--~~~~~~kV~WNaCya~gNLfk-------- 559 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIE-KPTFA-----EIIEESIQALISTV--LTEAAMKVRWNACYAMGNLFK-------- 559 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhh-hccHH-----HHHHHHHHhcccce--ecccccccchHHHHHHHHhhc--------
Confidence 345899999999999998654211 11111 12222244444432 267888999999999999952
Q ss_pred CCCC-CCChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 931 HPAS-LGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 931 ~~~~-~g~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
|+.. -++-+|.-.++++|+..+++ .|+|||.||+-||....+.+..+.. -.-..+.|..+| ||.+--
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~----~~Lsw~~lv~aL-------i~s~~~ 628 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQ----YALSWNALVTAL-------QKSEDT 628 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhH----HhHHHHHHHHHH-------HHHHHH
Confidence 2222 25567899999999999965 8999999999999988877655422 122334555555 333333
Q ss_pred HHhcCCCcccccCCchHHHHHHHHHHHHH--hccCCCC-CCccchhhHHHHHHH
Q 035871 1009 AALAVPSSVSDYGKSFSDVVQGLEHILEN--LGADHLS-APSSFKYRVALQKQK 1059 (1127)
Q Consensus 1009 ~AL~~p~~R~~yG~~~~~V~~~L~~aLe~--~~s~~~~-df~Eykyrd~L~~Q~ 1059 (1127)
..+--...|..||.++++++..++..+++ +-++..+ .-+.|+|..++..|.
T Consensus 629 v~f~eY~~~Dsl~~q~c~av~hll~la~SsdLp~mRETle~~~f~~~~a~~~~V 682 (728)
T KOG4535|consen 629 IDFLEYKYCDSLRTQICQALIHLLSLASSSDLPCMRETLELSQFLKSGAEGDDV 682 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhccchHHHHHhccccccc
Confidence 34433446778999999999999988887 2222222 235599999998883
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=7.8e-16 Score=190.19 Aligned_cols=447 Identities=18% Similarity=0.208 Sum_probs=298.4
Q ss_pred hhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHH--------hcCC
Q 035871 391 SKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAM--------LDGP 462 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaL--------L~gs 462 (1127)
-.|||.|++++ +|.++.||+.+-+++.. .-+.+|++++.++|.+.||-.-+.+++.+ |.+.
T Consensus 51 p~~Rq~aaVl~-------Rkl~~~~w~~l~~e~~~----siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPel 119 (1075)
T KOG2171|consen 51 PQVRQLAAVLL-------RKLLTKHWSRLSAEVQQ----SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPEL 119 (1075)
T ss_pred hHHHHHHHHHH-------HHHHHHHhhcCCHHHHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHH
Confidence 36999999999 67777799999877632 14568999999999999999999999988 5555
Q ss_pred chhhhhhhhhccccCC----cccccchHHHHHHHH----HHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCC---
Q 035871 463 STVFLQVAEYKESIKC----GSFMPLSTSYGHIIM----QLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRM--- 531 (1127)
Q Consensus 463 k~~llq~AE~~es~~~----~SFTsfS~tLg~~l~----eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL--- 531 (1127)
-+|+.|++...+.+.+ .=|+++..+.|+... .+++.+...+.++.++ +....++.++.++...+-++=
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~ 198 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVD 198 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHH
Confidence 6788887654322111 346777777777665 8999999999998888 999999999999888762111
Q ss_pred -CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhh
Q 035871 532 -PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCS 610 (1127)
Q Consensus 532 -~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~ 610 (1127)
=++++|++++.+...+..+.. | ....+|.+|..++.+.|+.-. ..+..+++++
T Consensus 199 ~~~~llP~~l~vl~~~i~~~d~---~---~a~~~l~~l~El~e~~pk~l~--------------------~~l~~ii~~~ 252 (1075)
T KOG2171|consen 199 KFRDLLPSLLNVLQEVIQDGDD---D---AAKSALEALIELLESEPKLLR--------------------PHLSQIIQFS 252 (1075)
T ss_pred HHHHHhHHHHHHhHhhhhccch---H---HHHHHHHHHHHHHhhchHHHH--------------------HHHHHHHHHH
Confidence 168899999988777754332 1 234678889888887764321 0233333332
Q ss_pred -----hcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCC--CCCCccccchhHHHHH
Q 035871 611 -----ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGH--VGNTAGFIGEKVVTAA 683 (1127)
Q Consensus 611 -----~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~--~~~~~~l~g~~~~l~A 683 (1127)
+.+...++|.-||++|..++.+-|.....+-.....++.-+|.+.+.++..++|... ..++..-.+ -.+|
T Consensus 253 l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~---~~~A 329 (1075)
T KOG2171|consen 253 LEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETP---YRAA 329 (1075)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCc---HHHH
Confidence 234456899999999999999988777766665556666677666655433555432 233321111 1235
Q ss_pred HHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH
Q 035871 684 IKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL 763 (1127)
Q Consensus 684 ~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l 763 (1127)
.+.||-...-+.| ++..-.+++ ++|..+
T Consensus 330 ~~~lDrlA~~L~g---------------------------------------------------~~v~p~~~~-~l~~~l 357 (1075)
T KOG2171|consen 330 EQALDRLALHLGG---------------------------------------------------KQVLPPLFE-ALEAML 357 (1075)
T ss_pred HHHHHHHHhcCCh---------------------------------------------------hhehHHHHH-HHHHHh
Confidence 5555532111100 111112233 788999
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~ai 841 (1127)
+.++..-|-||.-|||.|+......+-. +-..|++.+ +..++|.+|.||.|||-|+|.+. .-|.+.. -+-+...
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~V-l~~l~DphprVr~AA~naigQ~stdl~p~iqk--~~~e~l~ 433 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIV-LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK--KHHERLP 433 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHH-HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH--HHHHhcc
Confidence 9999999999999999998887666533 455677754 46789999999999999999996 3333321 1234445
Q ss_pred HHHHHhcCCCCc-chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhc--cCCchhhhhHHHHHh
Q 035871 842 HAVEINTHDPLV-SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLT--KDGDKIKSNAVRGLG 918 (1127)
Q Consensus 842 ~aLl~~l~D~~~-~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~--~D~DKVRsnAvRALG 918 (1127)
++|+..++|+.. .|..-||=||-|+....-.. .+.+ .|.-|++..+... +++.+||.+||-|+|
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~------------~l~p-YLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKS------------ILEP-YLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH------------HHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 566666655543 56666677777776542211 1111 2333444333333 345579999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGN 956 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n 956 (1127)
.+..-+... .....++.++-|.+++.+.+
T Consensus 501 svA~AA~~~---------F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 501 SVADAAQEK---------FIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHhhh---------hHhHHHHHHHHHHHHHhCCC
Confidence 997444432 23467899999999987655
No 5
>PRK09687 putative lyase; Provisional
Probab=99.69 E-value=5e-16 Score=173.13 Aligned_cols=206 Identities=16% Similarity=0.133 Sum_probs=158.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|-..|.|+++.||..|+.+|+.+|++. +.. ++..+++|+++.||..|+++||.+..-+.- .
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~-----------~~~-~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~ 88 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQD-----------VFR-LAIELCSSKNPIERDIGADILSQLGMAKRC------Q 88 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcch-----------HHH-HHHHHHhCCCHHHHHHHHHHHHhcCCCccc------h
Confidence 4556789999999999999999999653 222 334668999999999999999998421110 1
Q ss_pred HHHHHHHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHH
Q 035871 838 DKFIHAVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVR 915 (1127)
Q Consensus 838 ~~ai~aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvR 915 (1127)
..+++.|... ++|++..||..|+.+||++|.... ...+..+..+. .+..|.+ .||..|++
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--------------~~~~~a~~~l~----~~~~D~~~~VR~~a~~ 150 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNP--------------LYSPKIVEQSQ----ITAFDKSTNVRFAVAF 150 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--------------ccchHHHHHHH----HHhhCCCHHHHHHHHH
Confidence 3456666654 799999999999999999985321 11122333332 2345555 79999999
Q ss_pred HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
|||++. .+.+++.|+..+++.+..||..|++|||++... .+.+++.|+.++
T Consensus 151 aLg~~~-------------------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~----------~~~~~~~L~~~L 201 (280)
T PRK09687 151 ALSVIN-------------------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD----------NPDIREAFVAML 201 (280)
T ss_pred HHhccC-------------------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHh
Confidence 999883 256999999999999999999999999998322 246889999999
Q ss_pred hcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 996 RDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 996 ~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+++|..||..|+.||| .+|+ +.++..|+..|++
T Consensus 202 -~D~~~~VR~~A~~aLg------~~~~--~~av~~Li~~L~~ 234 (280)
T PRK09687 202 -QDKNEEIRIEAIIGLA------LRKD--KRVLSVLIKELKK 234 (280)
T ss_pred -cCCChHHHHHHHHHHH------ccCC--hhHHHHHHHHHcC
Confidence 5789999999999999 4665 4788888888875
No 6
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=5.6e-15 Score=164.77 Aligned_cols=203 Identities=20% Similarity=0.219 Sum_probs=152.4
Q ss_pred HHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHH
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDK 839 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ 839 (1127)
-.+++++++.+|..|+.+||.||... ..+..++..|..-+.+|+++.||.+|+.+||.+..-. ......
T Consensus 60 ~~ll~~~d~~vR~~A~~aLg~lg~~~------~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-----~~~~~~ 128 (280)
T PRK09687 60 IELCSSKNPIERDIGADILSQLGMAK------RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN-----PLYSPK 128 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCc------cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-----cccchH
Confidence 34678999999999999999998532 0122233323323379999999999999999984211 111245
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
+++.+...+.|++..||..|+||||++++.- .+..|++. .+|+| .||..|+.|||
T Consensus 129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~--------------------ai~~L~~~----L~d~~~~VR~~A~~aLg 184 (280)
T PRK09687 129 IVEQSQITAFDKSTNVRFAVAFALSVINDEA--------------------AIPLLINL----LKDPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHhccCCHH--------------------HHHHHHHH----hcCCCHHHHHHHHHHHh
Confidence 6777778889999999999999999988641 23334332 35555 79999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
++. . + .+.+++.|++.+.+.|..||-+|..|||++.. ..+++.|+..+.+
T Consensus 185 ~~~----~---------~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------------~~av~~Li~~L~~- 234 (280)
T PRK09687 185 SNK----Y---------D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------------KRVLSVLIKELKK- 234 (280)
T ss_pred cCC----C---------C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------------hhHHHHHHHHHcC-
Confidence 982 0 1 24688899999999999999999999999874 3589999999965
Q ss_pred CChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 999 SNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.+ ||+.|+.||| .+|.. ..+..|...++.
T Consensus 235 ~~--~~~~a~~ALg------~ig~~--~a~p~L~~l~~~ 263 (280)
T PRK09687 235 GT--VGDLIIEAAG------ELGDK--TLLPVLDTLLYK 263 (280)
T ss_pred Cc--hHHHHHHHHH------hcCCH--hHHHHHHHHHhh
Confidence 43 8999999999 57764 677766666653
No 7
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=1.2e-11 Score=157.54 Aligned_cols=193 Identities=22% Similarity=0.222 Sum_probs=142.1
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|...|+++++.||.+|+++|+.++.... . .++.+++|+++.||.+|+++||.+ ++
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~------------~-~l~~~L~D~d~~VR~~Av~aL~~~-------~~---- 743 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAGDA------------A-LFAAALGDPDHRVRIEAVRALVSV-------DD---- 743 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCH------------H-HHHHHhcCCCHHHHHHHHHHHhcc-------cC----
Confidence 34456788899999999999998763221 1 223567999999999999999976 11
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
.+.|+..++|++..||..|+.+||.+++.- .. .+..|. .+.+|.| .||..|+++
T Consensus 744 ---~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------------~~---~~~~L~----~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 744 ---VESVAGAATDENREVRIAVAKGLATLGAGG---------------AP---AGDAVR----ALTGDPDPLVRAAALAA 798 (897)
T ss_pred ---cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------------ch---hHHHHH----HHhcCCCHHHHHHHHHH
Confidence 234667789999999999999999998631 00 012222 2346666 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++. +. +..+..|+..+.+.+..||..|+.|||.+... ..++.|..+|
T Consensus 799 Lg~~g---------------~~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L- 847 (897)
T PRK13800 799 LAELG---------------CP---PDDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEAL- 847 (897)
T ss_pred HHhcC---------------Cc---chhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHh-
Confidence 99994 11 23446688889999999999999999998744 3678999999
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
++++-.||..|+.||+.. -| -+.....|..+|++
T Consensus 848 ~D~~~~VR~~A~~aL~~~-----~~--~~~a~~~L~~al~D 881 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRW-----PG--DPAARDALTTALTD 881 (897)
T ss_pred cCCCHHHHHHHHHHHhcc-----CC--CHHHHHHHHHHHhC
Confidence 568999999999999942 12 23566666666654
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.30 E-value=2.1e-09 Score=142.70 Aligned_cols=224 Identities=15% Similarity=0.133 Sum_probs=156.9
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHH----HHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISS----LIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~----Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
.|...|.+++..+|..|+.+|++|.... ++++..++.. .+..++...++.+|-.|+++||+++..+.-..+
T Consensus 450 ~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-----denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 450 LLISLLGLSSEQQQEYAVALLAILTDEV-----DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556677888999999999999985422 2333333221 334777888999999999999999763321111
Q ss_pred hHHH--HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhh
Q 035871 834 AEII--DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKS 911 (1127)
Q Consensus 834 ~~fv--~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRs 911 (1127)
.+ ..+++.|+..+++.+..+|..|+|||.|+... . + .+.+..+++- ...|+++++.
T Consensus 525 --iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~----~-----d--------~~~I~~Lv~L---Llsdd~~~~~ 582 (2102)
T PLN03200 525 --CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT----A-----D--------AATISQLTAL---LLGDLPESKV 582 (2102)
T ss_pred --HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc----c-----c--------hhHHHHHHHH---hcCCChhHHH
Confidence 23 25788899999999999999999999999643 0 1 1123333332 2567789999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHH
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSIL 991 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~L 991 (1127)
++.|+|||++.....+..... + .....+++.|.+.+++++.+++=.||++|+|++.+..-.- +.--....++.|
T Consensus 583 ~aL~vLgnIlsl~~~~d~~~~---g--~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~-~avv~agaIpPL 656 (2102)
T PLN03200 583 HVLDVLGHVLSVASLEDLVRE---G--SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC-ESLATDEIINPC 656 (2102)
T ss_pred HHHHHHHHHHhhcchhHHHHH---h--hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHHcCCHHHH
Confidence 999999999866554321000 0 0123588999999999999999999999999996542110 000112358999
Q ss_pred HHHHhcCCChHHHHHHHHHhcCCC
Q 035871 992 LLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 992 l~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+.+|. ..+|+||..||.||+...
T Consensus 657 V~LLs-s~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 657 IKLLT-NNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHh-cCChHHHHHHHHHHHHHH
Confidence 99995 699999999999997443
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.26 E-value=5.1e-11 Score=151.97 Aligned_cols=177 Identities=24% Similarity=0.235 Sum_probs=138.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.+...+.|+++.||.+|+.+|+.++... .++.+++|+++.||.+|+++||.+ +...
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~~~---------------~l~~~l~D~~~~VR~~aa~aL~~~------~~~~--- 773 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDDVE---------------SVAGAATDENREVRIAVAKGLATL------GAGG--- 773 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccCcH---------------HHHHHhcCCCHHHHHHHHHHHHHh------cccc---
Confidence 4456789999999999999999986432 123567999999999999999988 3221
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
...++.|...+.|++..||..|+.+||++++.- .. ...+++ +.+|.| .||..|++|
T Consensus 774 ~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------------~~----~~~l~~----aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 774 APAGDAVRALTGDPDPLVRAAALAALAELGCPP---------------DD----VAAATA----ALRASAWQVRQGAARA 830 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------------hh----HHHHHH----HhcCCChHHHHHHHHH
Confidence 133577888889999999999999999998530 11 112222 235555 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||.+. .+.+++.|+..++|.+..||..|+.|||.+-. .+.+.+.|..++.
T Consensus 831 L~~l~-------------------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-----------~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAA-------------------ADVAVPALVEALTDPHLDVRKAAVLALTRWPG-----------DPAARDALTTALT 880 (897)
T ss_pred HHhcc-------------------ccchHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------CHHHHHHHHHHHh
Confidence 99883 24577899999999999999999999999621 2457888888885
Q ss_pred cCCChHHHHHHHHHhc
Q 035871 997 DSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~ 1012 (1127)
+.+-.||.-|+.||.
T Consensus 881 -D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 881 -DSDADVRAYARRALA 895 (897)
T ss_pred -CCCHHHHHHHHHHHh
Confidence 578889999999996
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-07 Score=114.82 Aligned_cols=464 Identities=19% Similarity=0.238 Sum_probs=267.5
Q ss_pred hhhhHHHHHHHHH-HHHhhCCc---cccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchh
Q 035871 390 SSKVRVAALVCLQ-DLCRADPK---SFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTV 465 (1127)
Q Consensus 390 ~skVR~~AL~~L~-al~k~~~K---~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~ 465 (1127)
...+|++|=.-|. .|+-.++. ..-.-|..+-++... +-.+.+.--|.-|.|+.+.+|+|+++++
T Consensus 50 ~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~re-----qVK~~il~tL~~~ep~~~s~Aaq~va~I------- 117 (859)
T KOG1241|consen 50 SDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIRE-----QVKNNILRTLGSPEPRRPSSAAQCVAAI------- 117 (859)
T ss_pred cHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHH-----HHHHHHHHHcCCCCCCccchHHHHHHHH-------
Confidence 3468998866665 78777663 355568877666531 2235556678889999999999999875
Q ss_pred hhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHH
Q 035871 466 FLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRA 545 (1127)
Q Consensus 466 llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~ 545 (1127)
++.|-+.+. +- ++-..|..-.-.|....+-...|-.++...+..- |+.+..-.+.+..
T Consensus 118 --A~~ElP~n~----wp-----------~li~~lv~nv~~~~~~~~k~~slealGyice~i~-----pevl~~~sN~iLt 175 (859)
T KOG1241|consen 118 --ACIELPQNQ----WP-----------ELIVTLVSNVGEEQASMVKESSLEALGYICEDID-----PEVLEQQSNDILT 175 (859)
T ss_pred --HHhhCchhh----CH-----------HHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-----HHHHHHHHhHHHH
Confidence 333333211 11 1222233333344444444556666776665542 2222222222333
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHH-HHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHH
Q 035871 546 RIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQ-MFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQ 624 (1127)
Q Consensus 546 ~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~-~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQ 624 (1127)
-|.++-+-.....++|-+|+.||-.-+. +.+ .+..|.. ++ ++-++.=.+-+.....+|..|+|
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLe-------f~~~nF~~E~e-------rn--~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLE-------FTKANFNNEME-------RN--YIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHH-------HHHHhhccHhh-------hc--eeeeeeeecccCCcHHHHHHHHH
Confidence 3333332111123577788877754332 211 1111100 00 11000000112334679999999
Q ss_pred HHHHHHhhChhhhhhhHHH-HHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCcccc
Q 035871 625 ALRAVSHNYPNIMSSYWQQ-VSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDL 703 (1127)
Q Consensus 625 vL~ala~~yp~l~~~~~~~-l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~ 703 (1127)
+|.++..-|...+..|... +..+-..-++ ++. |.+.++|+..=-.
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amk--s~~------------------deValQaiEFWst-------------- 285 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMK--SDN------------------DEVALQAIEFWST-------------- 285 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCc------------------HHHHHHHHHHHHH--------------
Confidence 9999999998999888875 3333333332 111 2444444331110
Q ss_pred ccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHc-----cCC-----hhHHHH
Q 035871 704 LDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQ-----HIS-----SMVRTA 773 (1127)
Q Consensus 704 ~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~-----d~~-----~~VRaa 773 (1127)
=|...+.+ +++. .+......|+ ....|=...+..++|.+++ |++ =.+-.+
T Consensus 286 ------------iceEEiD~----~~e~--~e~~d~~~~p--~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 286 ------------ICEEEIDL----AIEY--GEAVDQGLPP--SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred ------------HHHHHHHH----HHHH--HHHhhcCCCc--hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 01000000 0000 0000000010 0112223334445555553 332 246677
Q ss_pred HHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCC
Q 035871 774 AVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPL 852 (1127)
Q Consensus 774 Ac~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~ 852 (1127)
|-.||.- |...=+|+ -..++. .+-.-...+|.-=|-||+=|.|.+--.|+-......+..+.+.++..+.|++
T Consensus 346 Ag~CL~l-----~A~~~~D~Iv~~Vl~-Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 346 AGVCLML-----FAQCVGDDIVPHVLP-FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred HHHHHHH-----HHHHhcccchhhhHH-HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 7788875 22222222 335555 3444567888899999999999998888877777788999999999999999
Q ss_pred cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCC
Q 035871 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 853 ~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
..||-.+||.||.|+|.+... .++...+..++.+.+.-..|+++|..|+++|+-+|..-+..-...++
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~------------~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEA------------IINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred hhhcchHHHHHHHHHhhchhh------------cccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999987532 34455667777777778899999999999999999755443222221
Q ss_pred CCCCChhHHHHHHHHHHHhhc--cCC-ccchhhHHHHHHhhhcccc
Q 035871 933 ASLGDSRWLERIVQALVSCVT--TGN-VKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~--~~n-~KVRWNAc~ALGnl~~n~~ 975 (1127)
.........+.+|+.|++.-. +|| ...|-.|=.|||.+.+|.+
T Consensus 488 qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 488 QTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred CCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 000011357889999998864 444 7889999999999998853
No 11
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.07 E-value=4.4e-09 Score=119.22 Aligned_cols=194 Identities=23% Similarity=0.316 Sum_probs=148.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+-..+.+.++.+|..|...++.++... ++.. +...+.|+++.||..|+.+||.+ + + .
T Consensus 48 ~~~~l~~~~~~vr~~aa~~l~~~~~~~-----------av~~-l~~~l~d~~~~vr~~a~~aLg~~------~-~----~ 104 (335)
T COG1413 48 LLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPL-LRELLSDEDPRVRDAAADALGEL------G-D----P 104 (335)
T ss_pred HHHHHcCCCHHHHHHHHHHHhhhchHH-----------HHHH-HHHHhcCCCHHHHHHHHHHHHcc------C-C----h
Confidence 346778889999999999999998765 3332 34678999999999999999988 2 2 4
Q ss_pred HHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc----------
Q 035871 839 KFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD---------- 907 (1127)
Q Consensus 839 ~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D---------- 907 (1127)
.+++.++..+. |++..||..|+|+||.+.+.-. +..+++. .+|++
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--------------------~~~l~~~----l~~~~~~~a~~~~~~ 160 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA--------------------LDPLLEA----LQDEDSGSAAAALDA 160 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--------------------hHHHHHH----hccchhhhhhhhccc
Confidence 66777777776 8999999999999999998632 1111111 12211
Q ss_pred ---hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCch
Q 035871 908 ---KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA 984 (1127)
Q Consensus 908 ---KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa 984 (1127)
.||..++.+||.++ .+..+..|+..+.+.+..||+.|+.|||.++...
T Consensus 161 ~~~~~r~~a~~~l~~~~-------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------- 211 (335)
T COG1413 161 ALLDVRAAAAEALGELG-------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------- 211 (335)
T ss_pred hHHHHHHHHHHHHHHcC-------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------
Confidence 59999999999994 2567788999999888899999999999999763
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 985 PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 985 ~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
..+...+...+ .+.+..||..++.+|+. +|. ......+...+++
T Consensus 212 ~~~~~~l~~~~-~~~~~~vr~~~~~~l~~------~~~--~~~~~~l~~~l~~ 255 (335)
T COG1413 212 VEAADLLVKAL-SDESLEVRKAALLALGE------IGD--EEAVDALAKALED 255 (335)
T ss_pred hhHHHHHHHHh-cCCCHHHHHHHHHHhcc------cCc--chhHHHHHHHHhc
Confidence 23456666777 57899999999999994 453 3566666777765
No 12
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.2e-05 Score=99.29 Aligned_cols=604 Identities=16% Similarity=0.152 Sum_probs=334.5
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCC---chh---
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGP---STV--- 465 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gs---k~~--- 465 (1127)
..|..|+..|..+....+-.+.+|...|. .|+.-=+.||+..||.+|++++.++..-. +..
T Consensus 133 ~~rE~al~il~s~~~~~~~~~~~~~~~l~-------------~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~ 199 (1075)
T KOG2171|consen 133 SLRESALLILSSLPETFGNTLQPHLDDLL-------------RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK 199 (1075)
T ss_pred chhHHHHHHHHhhhhhhccccchhHHHHH-------------HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH
Confidence 47899999998887766666666655554 34445567888889999999998774332 111
Q ss_pred -------hhhhhhhc----cc----cCCcccccchHHHHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHhHhc
Q 035871 466 -------FLQVAEYK----ES----IKCGSFMPLSTSYGHIIMQ-----LHNGIIYLIQRETHDRLLASLFKILMPLISC 525 (1127)
Q Consensus 466 -------llq~AE~~----es----~~~~SFTsfS~tLg~~l~e-----LHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~ 525 (1127)
.+.+.... ++ .--.+|+-|..+.+..++- +..+|--+=..|-+..+...+|-++..++.+
T Consensus 200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 11111100 00 0123555555554444422 2334444556777888999999999999999
Q ss_pred ccC-CCCCCCchHHHHHHHHHHHhhcCCC----C------CchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCC
Q 035871 526 TPY-SRMPGELMPNLIISLRARIEEGFPL----K------TDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSV 594 (1127)
Q Consensus 526 TPY-~RL~~~Ll~~vv~~l~~~i~~~~~~----~------~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~ 594 (1127)
.|- .|....+..+++-.+.....+...+ . .|...--+.|..++.-+-..-++..
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--------------- 344 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--------------- 344 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---------------
Confidence 885 4554556666666655544332222 0 0100011233334433322222111
Q ss_pred CCCCcchhHHHHHhhhh---cCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCC
Q 035871 595 EVDKRSGVLFTLLQCSE---RLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNT 671 (1127)
Q Consensus 595 ~~~~~s~~L~~Ll~~~~---~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~ 671 (1127)
++.-++++.. +.....-|.-||-.|++++-+.+..+..+.+++..++++.|++.++
T Consensus 345 -------v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp-------------- 403 (1075)
T KOG2171|consen 345 -------VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP-------------- 403 (1075)
T ss_pred -------ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH--------------
Confidence 2222222221 2334567999999999999999999999999999999988764332
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhh
Q 035871 672 AGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQW 751 (1127)
Q Consensus 672 ~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W 751 (1127)
+++.+|++.+..+ - .|++ |.++ +++=
T Consensus 404 ------rVr~AA~naigQ~--------s-tdl~-------------------------------------p~iq--k~~~ 429 (1075)
T KOG2171|consen 404 ------RVRYAALNAIGQM--------S-TDLQ-------------------------------------PEIQ--KKHH 429 (1075)
T ss_pred ------HHHHHHHHHHHhh--------h-hhhc-------------------------------------HHHH--HHHH
Confidence 7888888876522 1 1111 1111 1111
Q ss_pred HHHHHhhHHHHHccC-ChhHHHHHHHHHhccchhHHhhcchhHHH----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhc
Q 035871 752 SEMIEKHMPLILQHI-SSMVRTAAVTCFAGITSSVFFSLLKETQE----FIISSLIDSALHDDVASVRSAACRAIGVISC 826 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~-~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~ 826 (1127)
..++. .|-..+.++ ++.|.+.|+.|+-+.. +..+++.-+ .++...+.-+...+.+.||-.++.|||...-
T Consensus 430 e~l~~-aL~~~ld~~~~~rV~ahAa~al~nf~----E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 430 ERLPP-ALIALLDSTQNVRVQAHAAAALVNFS----EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HhccH-HHHHHhcccCchHHHHHHHHHHHHHH----HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 11111 122233344 4789999999988742 223333322 2333334455677889999999999998742
Q ss_pred ccccccchHHHHHHHHHHHHhc---C-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhh
Q 035871 827 FPQVSQSAEIIDKFIHAVEINT---H-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNL 902 (1127)
Q Consensus 827 ~p~L~~d~~fv~~ai~aLl~~l---~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a 902 (1127)
.-.. .-..|.+..++-|..-+ + +....+|.|..--++=|+-+..+.. |. ....+++..+.+....-
T Consensus 505 AA~~-~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~----F~-----~~a~eliqll~~~~~~~ 574 (1075)
T KOG2171|consen 505 AAQE-KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK----FL-----PLAEELIQLLLELQGSD 574 (1075)
T ss_pred HHhh-hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh----hh-----HhHHHHHHHHHhhcccc
Confidence 1111 11234555565555433 3 4556889998888888887765421 22 23334555554433222
Q ss_pred ccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc----------------------------c
Q 035871 903 TKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT----------------------------T 954 (1127)
Q Consensus 903 ~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~----------------------------~ 954 (1127)
..|+|.-|+.-.-+.|++++.+..+-. .+...++..|++..+ +
T Consensus 575 ~~~dd~~~sy~~~~warmc~ilg~~F~---------p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~ 645 (1075)
T KOG2171|consen 575 QDDDDPLRSYMIAFWARMCRILGDDFA---------PFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGD 645 (1075)
T ss_pred hhhccccHHHHHHHHHHHHHHhchhhH---------hHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCC
Confidence 456778999999999999888765321 123444444444442 0
Q ss_pred C-Cccc-------hhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCccccc----CC
Q 035871 955 G-NVKV-------QWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDY----GK 1022 (1127)
Q Consensus 955 ~-n~KV-------RWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~y----G~ 1022 (1127)
. ++-| +=-||-+||..-.+. ..+-.+|..+|+...+-.+.-+-..-||..|+.++..--++... |.
T Consensus 646 ~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l--k~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p 723 (1075)
T KOG2171|consen 646 KENIGIRTSVLDEKETACEALGEYAKEL--KEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGP 723 (1075)
T ss_pred ceeeeeeehhHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 1 1222 235788888765442 23456899999996566666677788999999998643333322 22
Q ss_pred -chHHHHHHHHHHHHHhccCCCCCCccchhhHHH-------------HHHHHHHHHHHHHHHhhcccccccccccccCCC
Q 035871 1023 -SFSDVVQGLEHILENLGADHLSAPSSFKYRVAL-------------QKQKSSFLEEWFKVLCSSLGESTTHLENENNSV 1088 (1127)
Q Consensus 1023 -~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L-------------~~Q~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 1088 (1127)
+...+|.+.+.++-..-.+..+.-.---+-.++ +.+..+.++.=++.+.....|+.++-+.++.-+
T Consensus 724 ~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed 803 (1075)
T KOG2171|consen 724 EYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEED 803 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 223455555554443211111100000000111 111334444444445555555555444332222
Q ss_pred Cc--------hhHHHHHHHHHHHHHHHhccChhHHHHHHHhhhh
Q 035871 1089 GN--------QKKEMISKAIRSLIEVYEGRKQFAVAKKFEMMDS 1124 (1127)
Q Consensus 1089 ~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1124 (1127)
.+ .+.+-|..++-..+-.+-+-+....+..||++..
T Consensus 804 ~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p 847 (1075)
T KOG2171|consen 804 DDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLP 847 (1075)
T ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHH
Confidence 22 2444455566555555555666778888888753
No 13
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.77 E-value=1.2e-07 Score=107.65 Aligned_cols=178 Identities=24% Similarity=0.320 Sum_probs=135.4
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+-..+.|.++.||..|.+|||.+|.+. .+..++..+.+|++..||..|+++||.+. + +
T Consensus 79 l~~~l~d~~~~vr~~a~~aLg~~~~~~-----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~------~-----~ 136 (335)
T COG1413 79 LRELLSDEDPRVRDAAADALGELGDPE-----------AVPPLVELLENDENEGVRAAAARALGKLG------D-----E 136 (335)
T ss_pred HHHHhcCCCHHHHHHHHHHHHccCChh-----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcC------c-----h
Confidence 336778899999999999999999654 22223323333899999999999999982 2 4
Q ss_pred HHHHHHHHhcCCCC------------cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC
Q 035871 839 KFIHAVEINTHDPL------------VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~------------~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~ 906 (1127)
.++..++..+.|+. ..||..|+-+||++++.... ..+..+ ..|.
T Consensus 137 ~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~-----------------~~l~~~-------l~~~ 192 (335)
T COG1413 137 RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAI-----------------PLLIEL-------LEDE 192 (335)
T ss_pred hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhh-----------------HHHHHH-------HhCc
Confidence 66788888887766 36899999999999875211 112222 2344
Q ss_pred c-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchh
Q 035871 907 D-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985 (1127)
Q Consensus 907 D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~ 985 (1127)
+ .||..|+.+||.++ +. ...+...+.+.+.+.+..|||-++.+||.++..+
T Consensus 193 ~~~vr~~Aa~aL~~~~--------------~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~----------- 244 (335)
T COG1413 193 DADVRRAAASALGQLG--------------SE---NVEAADLLVKALSDESLEVRKAALLALGEIGDEE----------- 244 (335)
T ss_pred hHHHHHHHHHHHHHhh--------------cc---hhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcch-----------
Confidence 3 69999999999995 11 1356678889999999999999999999999654
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 986 SVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 986 ~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
....|+..+.+ .++.+|+.++.+++
T Consensus 245 -~~~~l~~~l~~-~~~~~~~~~~~~~~ 269 (335)
T COG1413 245 -AVDALAKALED-EDVILALLAAAALG 269 (335)
T ss_pred -hHHHHHHHHhc-cchHHHHHHHHHhc
Confidence 67788999864 77889999999997
No 14
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.76 E-value=1.6e-07 Score=110.46 Aligned_cols=173 Identities=13% Similarity=0.001 Sum_probs=112.3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|-..+.|.++.||.++.++||.|+... +.. .+..+++|++|.||.++..++|.. +.
T Consensus 91 L~~~L~d~~~~vr~aaa~ALg~i~~~~-----------a~~-~L~~~L~~~~p~vR~aal~al~~r------~~------ 146 (410)
T TIGR02270 91 VLAVLQAGPEGLCAGIQAALGWLGGRQ-----------AEP-WLEPLLAASEPPGRAIGLAALGAH------RH------ 146 (410)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCchH-----------HHH-HHHHHhcCCChHHHHHHHHHHHhh------cc------
Confidence 446778889999999999999998765 222 234667999999999999999985 22
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLG 918 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALG 918 (1127)
+..+.++..++|++..||..|..+||.+++.- .+..|... ..+.++.||..|+.+||
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~--------------------a~~~L~~a---l~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPRRL--------------------SESTLRLY---LRDSDPEVRFAALEAGL 203 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc--------------------chHHHHHH---HcCCCHHHHHHHHHHHH
Confidence 34566777788999999999999999998641 12223221 13344479999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
.++. +.++..|+...+....-++..++.+++.+..+ .+.+.|..++++
T Consensus 204 ~lG~-------------------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~------------~a~~~L~~ll~d- 251 (410)
T TIGR02270 204 LAGS-------------------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP------------DAQAWLRELLQA- 251 (410)
T ss_pred HcCC-------------------HhHHHHHHHHHhccCccHHHHHHHHHHhCCch------------hHHHHHHHHhcC-
Confidence 8841 23344444444444444444444454444221 344555555543
Q ss_pred CChHHHHHHHHHhc
Q 035871 999 SNFKIRIQAAAALA 1012 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~ 1012 (1127)
++ ||..|+.|||
T Consensus 252 ~~--vr~~a~~AlG 263 (410)
T TIGR02270 252 AA--TRREALRAVG 263 (410)
T ss_pred hh--hHHHHHHHHH
Confidence 21 5555555555
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.69 E-value=8.1e-08 Score=128.01 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=150.8
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc---
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCFPQ--- 829 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~--- 829 (1127)
+|..+|.++++.+|..|+.+|+||+.. +.+.|.. ++..| ..++++.++.+|..|++||++++....
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~-----~~qir~iV~~aGAIppL-V~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCH-----SEDIRACVESAGAVPAL-LWLLKNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC-----cHHHHHHHHHCCCHHHH-HHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence 455677888999999999999998752 2222222 23433 356677778888888888887742111
Q ss_pred ----------------------------cccchHHH------HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc
Q 035871 830 ----------------------------VSQSAEII------DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCID 875 (1127)
Q Consensus 830 ----------------------------L~~d~~fv------~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~ 875 (1127)
+.+...+. ...++.|...++.++..++..|+|+|+|+|..-.....
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 00110001 23567777788899999999999999999974211100
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC
Q 035871 876 DFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG 955 (1127)
Q Consensus 876 ~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~ 955 (1127)
. .+....+..+++- +...+++|+..|+.||+|+.+..+.++. -....+.+|..|++.++++
T Consensus 646 a---------vv~agaIpPLV~L---Lss~~~~v~keAA~AL~nL~~~~~~~q~-------~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 646 S---------LATDEIINPCIKL---LTNNTEAVATQSARALAALSRSIKENRK-------VSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred H---------HHHcCCHHHHHHH---HhcCChHHHHHHHHHHHHHHhCCCHHHH-------HHHHHcCCHHHHHHHHhCC
Confidence 0 1111122233321 1346668999999999999853333210 0012345799999999999
Q ss_pred CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 956 NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 956 n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
+.+|+=.|..||+|++..+..... . -...+++.|..+|+ +.+.++|.+||+||..
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~e-i-~~~~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAE-A-LAEDIILPLTRVLR-EGTLEGKRNAARALAQ 761 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHH-H-HhcCcHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence 999999999999999987643210 0 12345899999996 5789999999999953
No 16
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.63 E-value=4.2e-07 Score=106.94 Aligned_cols=175 Identities=16% Similarity=0.072 Sum_probs=128.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|...+.+.+|.||.++..+++..+.+.+.. + ..+++|+++.||++|+|+||.+. .
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~~~~~~------------L-~~~L~d~d~~Vra~A~raLG~l~------~----- 176 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRHDPGPA------------L-EAALTHEDALVRAAALRALGELP------R----- 176 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChHHH------------H-HHHhcCCCHHHHHHHHHHHHhhc------c-----
Confidence 5667889999999999999999977554321 2 24568999999999999999983 2
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGL 917 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRAL 917 (1127)
..+++.|...+.|.+..||.-|+|+|+.+++.-. +..+... .+..+..++.-+..++
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A--------------------~~~l~~~---~~~~g~~~~~~l~~~l 233 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLA--------------------WGVCRRF---QVLEGGPHRQRLLVLL 233 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhH--------------------HHHHHHH---HhccCccHHHHHHHHH
Confidence 3566667777899999999999999999886311 2222221 1344445554444444
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
+.. | .++++..|+..+++.+ ||..++.|||.++.- ..++.|+..+.+
T Consensus 234 al~---------------~----~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d 280 (410)
T TIGR02270 234 AVA---------------G----GPDAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMRE 280 (410)
T ss_pred HhC---------------C----chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcC
Confidence 443 1 1367777777777765 999999999999854 478899999976
Q ss_pred CCChHHHHHHHHHhcCCC
Q 035871 998 SSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~ 1015 (1127)
.. +|-.|..|+..+.
T Consensus 281 ~~---~aR~A~eA~~~It 295 (410)
T TIGR02270 281 PP---WARLAGEAFSLIT 295 (410)
T ss_pred cH---HHHHHHHHHHHhh
Confidence 54 9999999997543
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.59 E-value=1.2e-07 Score=86.42 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=68.1
Q ss_pred cCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCC
Q 035871 904 KDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMD 982 (1127)
Q Consensus 904 ~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~ 982 (1127)
+|.+ .||.+|+++||++. .+++++.|++.++++|..||+.|+.|||+++.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~-------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------- 60 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG-------------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD---------- 60 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT-------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------
T ss_pred cCCCHHHHHHHHHHHHHcC-------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 4554 79999999999773 46789999999999999999999999999973
Q ss_pred chhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 983 WAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 983 wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+.+++.|..++.++++.-||..|+.|||
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4588999999999999999999999996
No 18
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=9.7e-07 Score=104.97 Aligned_cols=231 Identities=22% Similarity=0.177 Sum_probs=148.9
Q ss_pred HHHHccCChhHHHHHHHHHhccchh-HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSS-VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~-~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+..+.-.++..+-.+..++-.+.+. .+..+..--+..++..++..+.++.+|.++..|+|||-++..-.+-....-.-.
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a 151 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA 151 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence 3344444444455555554443221 111111122335666677777789999999999999999964322211110013
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC--chhhhhHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG--DKIKSNAVRG 916 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~--DKVRsnAvRA 916 (1127)
.+++.++..+..++..||-.|.||||||.-.=.... +-.++...+..|+. ....+ .+...|++-+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R---------d~vl~~g~l~pLl~----~l~~~~~~~~lRn~tW~ 218 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR---------DYVLSCGALDPLLR----LLNKSDKLSMLRNATWT 218 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH---------HHHHhhcchHHHHH----HhccccchHHHHHHHHH
Confidence 567788889999999999999999999974211000 00122222333322 23333 3699999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh--ccccccccCCCchhHHHHHHHHH
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF--LNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~--~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
|.||.+--.+.+ .-+..+.++++|...+.+.|..|.-+||+||+.+- .|+.+..- --.-+++.|..+
T Consensus 219 LsNlcrgk~P~P--------~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v---i~~gvv~~LV~l 287 (514)
T KOG0166|consen 219 LSNLCRGKNPSP--------PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMV---IDAGVVPRLVDL 287 (514)
T ss_pred HHHHHcCCCCCC--------cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH---HHccchHHHHHH
Confidence 999986664322 12357889999999999999999999999999885 44443210 112367899999
Q ss_pred HhcCCChHHHHHHHHHhcCCC
Q 035871 995 LRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
|.+ +..+|++-|-+|+|.+.
T Consensus 288 L~~-~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 288 LGH-SSPKVVTPALRAIGNIV 307 (514)
T ss_pred HcC-CCcccccHHHhhcccee
Confidence 976 55689999999999765
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.43 E-value=5.7e-05 Score=90.55 Aligned_cols=368 Identities=15% Similarity=0.141 Sum_probs=227.8
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhc
Q 035871 495 LHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALST 574 (1127)
Q Consensus 495 LHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~ 574 (1127)
.-.+|...|.+ +++.+...+|+|++.+. .+++++.+...+...+.+.+ .+ +|..|..|+..++..
T Consensus 80 ~~n~l~kdl~~-~n~~~~~lAL~~l~~i~--------~~~~~~~l~~~v~~ll~~~~-----~~-VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 80 IINSLQKDLNS-PNPYIRGLALRTLSNIR--------TPEMAEPLIPDVIKLLSDPS-----PY-VRKKAALALLKIYRK 144 (526)
T ss_dssp HHHHHHHHHCS-SSHHHHHHHHHHHHHH---------SHHHHHHHHHHHHHHHHSSS-----HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCHHHHHHHHhhhhhhc--------ccchhhHHHHHHHHHhcCCc-----hH-HHHHHHHHHHHHhcc
Confidence 44556667776 45568889999999987 35678888888877776432 23 777888888877765
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHh
Q 035871 575 SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKA 654 (1127)
Q Consensus 575 ~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~ 654 (1127)
.|..-+- . |+..+.+.. .+..+.|+..|+.++..+ +..|.........+...+++++..
T Consensus 145 ~p~~~~~------------------~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 145 DPDLVED------------------E-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSD 203 (526)
T ss_dssp CHCCHHG------------------G-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTC
T ss_pred CHHHHHH------------------H-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccc
Confidence 3322110 0 233333333 233478889999999988 544544323333444444444411
Q ss_pred hCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccch
Q 035871 655 ASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESS 734 (1127)
Q Consensus 655 ~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~ 734 (1127)
. + .-.+...+++|..+ . ....
T Consensus 204 ~---~-----------------~~~q~~il~~l~~~-------~--------------------------------~~~~ 224 (526)
T PF01602_consen 204 P---D-----------------PWLQIKILRLLRRY-------A--------------------------------PMEP 224 (526)
T ss_dssp C---S-----------------HHHHHHHHHHHTTS-------T--------------------------------SSSH
T ss_pred c---c-----------------hHHHHHHHHHHHhc-------c--------------------------------cCCh
Confidence 1 0 01122233333211 0 0000
Q ss_pred hhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHH
Q 035871 735 EDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVR 814 (1127)
Q Consensus 735 ~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VR 814 (1127)
.. ... ..+++. +...+++.++.|+-.++.++..+.+..- ....++..+ ..++.+.+++||
T Consensus 225 ~~----------~~~--~~~i~~-l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L-~~lL~s~~~nvr 284 (526)
T PF01602_consen 225 ED----------ADK--NRIIEP-LLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPL-IKLLSSSDPNVR 284 (526)
T ss_dssp HH----------HHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHH-HHHHTSSSHHHH
T ss_pred hh----------hhH--HHHHHH-HHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHH-HHHhhcccchhe
Confidence 00 000 234443 3346667788999999999998765431 234455544 477789999999
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHH
Q 035871 815 SAACRAIGVISCFPQVSQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMA 893 (1127)
Q Consensus 815 aAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~ 893 (1127)
..|.++|..++.. ...++. .....+..+ .|++..||.+|.-.|.++++.--. ...+.
T Consensus 285 ~~~L~~L~~l~~~-----~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----------------~~Il~ 342 (526)
T PF01602_consen 285 YIALDSLSQLAQS-----NPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----------------KEILD 342 (526)
T ss_dssp HHHHHHHHHHCCH-----CHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----------------HHHHH
T ss_pred hhHHHHHHHhhcc-----cchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccch----------------hhHHH
Confidence 9999999998631 122222 112222233 488899999999999999985211 12344
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 894 SLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 894 ~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
.|.+.+- ..++..+|..+++++|.+..-... ..+..++.+++.++.++-.+.=.+...+-+++.+
T Consensus 343 eL~~~l~--~~~d~~~~~~~i~~I~~la~~~~~-------------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 343 ELLKYLS--ELSDPDFRRELIKAIGDLAEKFPP-------------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp HHHHHHH--HC--HHHHHHHHHHHHHHHHHHGS-------------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred HHHHHHH--hccchhhhhhHHHHHHHHHhccCc-------------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence 4444420 112335999999999999744422 1577889999999888788888888999888865
Q ss_pred ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHH
Q 035871 974 ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSD 1026 (1127)
Q Consensus 974 ~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~ 1026 (1127)
. ..-...+...|+..+.+.++-.++..+++-+| .||.....
T Consensus 408 ~------~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilG------Ey~~~~~~ 448 (526)
T PF01602_consen 408 N------PELREKILKKLIELLEDISSPEALAAAIWILG------EYGELIEN 448 (526)
T ss_dssp S------TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHH------HHCHHHTT
T ss_pred C------hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhc------ccCCcccc
Confidence 3 22246689999999998888999999999999 68866544
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00013 Score=89.15 Aligned_cols=285 Identities=17% Similarity=0.189 Sum_probs=173.9
Q ss_pred HccCChhHHHHHHHHHhcc--chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHH
Q 035871 763 LQHISSMVRTAAVTCFAGI--TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDK 839 (1127)
Q Consensus 763 l~d~~~~VRaaAc~cLa~I--gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ 839 (1127)
++.++=.-|.+|.=|||.| |++.-...|... -.+++++ .++.|..-.||-.|+++||.+. ..|.-.........
T Consensus 373 i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~--qalp~ii-~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI--QALPSII-NLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred cCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh--hhhHHHH-HHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 4566666799999999996 444322222111 1233333 5667999999999999999997 33444444555666
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc--C-Cc-hhhhhHHH
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK--D-GD-KIKSNAVR 915 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~--D-~D-KVRsnAvR 915 (1127)
.+.+++..+.| ++.|-.+++||+-++.++.-....+.+-.+. .+.+=+..+..|++ .++ | ++ ..|+.|..
T Consensus 450 ~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~-~t~~y~~ii~~Ll~----~tdr~dgnqsNLR~AAYe 523 (859)
T KOG1241|consen 450 KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDP-ATPFYEAIIGSLLK----VTDRADGNQSNLRSAAYE 523 (859)
T ss_pred HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCc-cchhHHHHHHHHHh----hccccccchhhHHHHHHH
Confidence 77788877766 6899999999999999976543322110110 11122233444444 444 2 44 79999999
Q ss_pred HHhhhhhccccCCCC---------------------------------------------CCCCCCChhHHHHHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSS---------------------------------------------HPASLGDSRWLERIVQALVS 950 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~---------------------------------------------~~~~~g~~~~~E~~i~aLlk 950 (1127)
|||.|.++.+.+-.. +-+...-+...+.++..|+.
T Consensus 524 ALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflr 603 (859)
T KOG1241|consen 524 ALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLR 603 (859)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 999998777753310 00000112345666667777
Q ss_pred hhcc-CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHH-------Hh-----------
Q 035871 951 CVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAA-------AL----------- 1011 (1127)
Q Consensus 951 ~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~-------AL----------- 1011 (1127)
.++. ++.-|.=-|=+|+|-+..+ +..+...+.+..+|-|..-|.++..+-|-..|.. ||
T Consensus 604 i~~s~~s~~v~e~a~laV~tl~~~--Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~ 681 (859)
T KOG1241|consen 604 IFESKRSAVVHEEAFLAVSTLAES--LGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDEL 681 (859)
T ss_pred HHcCCccccchHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 6655 5566666666666655432 1122234566667777777766666666554422 22
Q ss_pred --------cCCC-ccc--------------ccCCchHHHHHHHHHHHHHhccC--CCCCCccchhhHHHHHH
Q 035871 1012 --------AVPS-SVS--------------DYGKSFSDVVQGLEHILENLGAD--HLSAPSSFKYRVALQKQ 1058 (1127)
Q Consensus 1012 --------~~p~-~R~--------------~yG~~~~~V~~~L~~aLe~~~s~--~~~df~Eykyrd~L~~Q 1058 (1127)
+.|. +|. ..|.+|...|+.++..|+.+++- +..||..--|.+.|++-
T Consensus 682 mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~ 753 (859)
T KOG1241|consen 682 MTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREG 753 (859)
T ss_pred HHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH
Confidence 1111 121 24567889999999999988642 33557777888999987
No 21
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=2.3e-06 Score=101.79 Aligned_cols=223 Identities=18% Similarity=0.192 Sum_probs=148.4
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAV 844 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aL 844 (1127)
+.++.+|-.|+-||.+|-+..-+.--.--..-++. ++..++...+..||--|++|||++.-...-..|-..-..++..|
T Consensus 121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp-~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVP-IFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred CCChhHHHHHHHHHHHHhcCchhhccccccCCchH-HHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 55699999999999998664422110000011222 33467789999999999999999974333222221122345666
Q ss_pred HHhcCCCCc-chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhh
Q 035871 845 EINTHDPLV-SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSR 922 (1127)
Q Consensus 845 l~~l~D~~~-~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~ 922 (1127)
+..+..+.. ....++.|+|.|+|..-. | ..+-+.+..++.+..+..+..| .|...|+=|+.+|.
T Consensus 200 l~~l~~~~~~~~lRn~tW~LsNlcrgk~---------P----~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs- 265 (514)
T KOG0166|consen 200 LRLLNKSDKLSMLRNATWTLSNLCRGKN---------P----SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT- 265 (514)
T ss_pred HHHhccccchHHHHHHHHHHHHHHcCCC---------C----CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-
Confidence 666655543 677799999999996421 1 1112345666666667777777 79999999999995
Q ss_pred ccccCCCCCCCCCCChhHHH-----HHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 923 FVKYTSSSHPASLGDSRWLE-----RIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 923 ~l~~~~~~~~~~~g~~~~~E-----~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
+ |..+.++ +.+..|++.|.....+|+-=|-.|+||+-.-........ --..+++.|..++..
T Consensus 266 ----d--------g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v-i~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 266 ----D--------GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV-INSGALPVLSNLLSS 332 (514)
T ss_pred ----c--------CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH-HhcChHHHHHHHhcc
Confidence 1 2122222 346779999999999999999999999754332221100 012356888999987
Q ss_pred CCChHHHHHHHHHhcCCC
Q 035871 998 SSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~ 1015 (1127)
.+.-++|-.|+..++.+.
T Consensus 333 s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 333 SPKESIKKEACWTISNIT 350 (514)
T ss_pred CcchhHHHHHHHHHHHhh
Confidence 788889999999999764
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0028 Score=76.83 Aligned_cols=149 Identities=23% Similarity=0.385 Sum_probs=102.8
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFA 878 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~ 878 (1127)
+++.++.|+-|.||-+|.--||.++ ||+.... +.++++.-+..++.-.+.+|=.+|.||+|.|+-.+..++.
T Consensus 666 lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p---~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--- 739 (885)
T KOG2023|consen 666 LLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP---NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK--- 739 (885)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh---
Confidence 6678899999999999999999997 4444433 3578888888889999999999999999999988776653
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCc
Q 035871 879 FKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNV 957 (1127)
Q Consensus 879 ~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~ 957 (1127)
+ -+ ..++..|+.. ++ .+..+ .+-.|.+-.+|.|+..-+.+-.+ -.+..++
T Consensus 740 --~----~v-~~vl~~L~~i-in-~~~~~~tllENtAITIGrLg~~~Pe~vAp---------~l~~f~~----------- 790 (885)
T KOG2023|consen 740 --Q----YV-SPVLEDLITI-IN-RQNTPKTLLENTAITIGRLGYICPEEVAP---------HLDSFMR----------- 790 (885)
T ss_pred --h----HH-HHHHHHHHHH-hc-ccCchHHHHHhhhhhhhhhhccCHHhcch---------hHHHHHH-----------
Confidence 2 12 2234444432 22 23333 48899999999998555432210 1222222
Q ss_pred cchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 958 KVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 958 KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
.| |+.|.++..|+ ..+++|..+|+.+.
T Consensus 791 --pW--c~sl~~i~Dne--------EK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 791 --PW--CTSLRNIDDNE--------EKESAFRGLCNMIN 817 (885)
T ss_pred --HH--HHHhcccccch--------hHHHHHHHHHHhee
Confidence 23 66677766654 45778888888873
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.33 E-value=0.028 Score=70.81 Aligned_cols=519 Identities=19% Similarity=0.199 Sum_probs=267.5
Q ss_pred CCCccCCCCCCCCccchhhhhhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHH
Q 035871 371 SDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMA 450 (1127)
Q Consensus 371 SDSd~SDse~~~~~~~r~~~skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~a 450 (1127)
+|+||||.|- ..=|||.+|+.|+.++.....-.+..+...+= |.| -.=.+|....||+-
T Consensus 334 ~~deYsDDeD--------~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~------------p~l-I~RfkEREEnVk~d 392 (1233)
T KOG1824|consen 334 QDDEYSDDED--------MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLG------------PAL-ISRFKEREENVKAD 392 (1233)
T ss_pred hccccccccc--------hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhC------------HHH-HHHHHHHhhhHHHH
Confidence 4788998773 34699999999999988754322222222211 122 23468899999999
Q ss_pred HHHHHHHHhcCCchhhhhhhhh---cc-ccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcc
Q 035871 451 SASTLAAMLDGPSTVFLQVAEY---KE-SIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCT 526 (1127)
Q Consensus 451 A~~~LsaLL~gsk~~llq~AE~---~e-s~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~T 526 (1127)
...+.-++|....+. .....+ .+ ++.+.+-.-++.+.-.++..+|+-|- |++..+..-++--|..||-.-
T Consensus 393 vf~~yi~ll~qt~~~-~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr-----~ks~kt~~~cf~lL~eli~~l 466 (1233)
T KOG1824|consen 393 VFHAYIALLKQTRPV-IEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR-----EKSVKTRQGCFLLLTELINVL 466 (1233)
T ss_pred HHHHHHHHHHcCCCC-cccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh-----hccccchhhHHHHHHHHHHhC
Confidence 999999999886552 222222 11 22233445678888889999998844 888887777777777777776
Q ss_pred cCCCCC--CCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHH
Q 035871 527 PYSRMP--GELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLF 604 (1127)
Q Consensus 527 PY~RL~--~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~ 604 (1127)
|-.=-+ +.++|.++.. ..+++--.+.++-+|.++..++.+.+|
T Consensus 467 p~~l~~~~~slvpgI~~~--------l~DkSsss~~ki~~L~fl~~~L~s~~p--------------------------- 511 (1233)
T KOG1824|consen 467 PGALAQHIPSLVPGIIYS--------LNDKSSSSNLKIDALVFLYSALISHPP--------------------------- 511 (1233)
T ss_pred cchhhhcccccchhhhhh--------cCCccchHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 632111 2333333321 233333334556666666666555443
Q ss_pred HHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHH
Q 035871 605 TLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAI 684 (1127)
Q Consensus 605 ~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~ 684 (1127)
....+|...+...+..+.++- + .++..+|.
T Consensus 512 ------------------------------~~fhp~~~~Ls~~v~~aV~d~------------------f--yKisaEAL 541 (1233)
T KOG1824|consen 512 ------------------------------EVFHPHLSALSPPVVAAVGDP------------------F--YKISAEAL 541 (1233)
T ss_pred ------------------------------hhcccchhhhhhHHHHHhcCc------------------h--HhhhHHHH
Confidence 222223322222222221100 0 02333344
Q ss_pred HHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH-
Q 035871 685 KVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL- 763 (1127)
Q Consensus 685 klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l- 763 (1127)
-+..++.|.+-- ++.+..+| . ..|...|+.-.+.++-
T Consensus 542 ~v~~~lvkvirp------l~~~~~~d--------------------~----------------~~~v~~m~~~tl~rL~a 579 (1233)
T KOG1824|consen 542 LVCQQLVKVIRP------LQPPSSFD--------------------A----------------SPYVKTMYDCTLQRLKA 579 (1233)
T ss_pred HHHHHHHHHhcc------cCCCccCC--------------------C----------------ChhHHHHHHHHHHHHhc
Confidence 444444443310 00000011 0 0122334443442221
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
+|.+-.||..|.+|.|++-..--..|..+... |+. ++..-+ .+..-|.+|+||+-.+..-|---+=..-....++.
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~-~L~-il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~ 655 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNELPR-TLP-ILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPE 655 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHH-HHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHH
Confidence 46678999999999998644333333333322 221 121222 55668999999999987544322212223344444
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhc-ccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHC-IDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~-~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
+.. -+ .|...+|++-+-..... +..+ ...+...++..++.-...+..+.| .|-.+|+--|-.+.
T Consensus 656 l~~-------fl-rK~~r~lr~~~l~a~~~L~~~~------~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~ 721 (1233)
T KOG1824|consen 656 LAS-------FL-RKNQRALRLATLTALDKLVKNY------SDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLA 721 (1233)
T ss_pred HHH-------HH-HHHHHHHHHHHHHHHHHHHHHH------hccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 431 12 36777887766532211 1110 114566667777666666667777 58888877776664
Q ss_pred hccccCC--------------CCCCCCCCC-hhHHHHHHHHHH-------------Hhhcc---CCc--cchhhHHHHHH
Q 035871 922 RFVKYTS--------------SSHPASLGD-SRWLERIVQALV-------------SCVTT---GNV--KVQWNVCRALS 968 (1127)
Q Consensus 922 ~~l~~~~--------------~~~~~~~g~-~~~~E~~i~aLl-------------k~l~~---~n~--KVRWNAc~ALG 968 (1127)
..-+..- +..|.-.|. ..-....+++|+ .+++. ++. -+---|=|++.
T Consensus 722 ~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 722 IIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred hcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHH
Confidence 3222100 011221121 111233333332 22211 000 12222333333
Q ss_pred hhhccccccccCCCchhHHHHHHHHHHh-cCCChHHHHHHHHHhcCCCcccc--------------cCCchHHHHHHHHH
Q 035871 969 NLFLNETINLEDMDWAPSVFSILLLLLR-DSSNFKIRIQAAAALAVPSSVSD--------------YGKSFSDVVQGLEH 1033 (1127)
Q Consensus 969 nl~~n~~i~~~~~~wa~~v~~~Ll~ll~-~~~NFKVRi~AA~AL~~p~~R~~--------------yG~~~~~V~~~L~~ 1033 (1127)
..-.- +-.....-+..+...|++-++ ...|--+|.=|--.||..+.|-+ ||+.+++|-+|...
T Consensus 802 ~cvA~--Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ 879 (1233)
T KOG1824|consen 802 KCVAA--LTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASY 879 (1233)
T ss_pred HHHHH--HHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHH
Confidence 32110 000111223444455544443 34455667778888888876654 55668889999999
Q ss_pred HHHHhccCCCCCCccchhhHHHHHHHHHHH
Q 035871 1034 ILENLGADHLSAPSSFKYRVALQKQKSSFL 1063 (1127)
Q Consensus 1034 aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l 1063 (1127)
||.++...++++|.-|=-..-=-++++++|
T Consensus 880 ALGsl~vgnl~~yLpfil~qi~sqpk~QyL 909 (1233)
T KOG1824|consen 880 ALGSLAVGNLPKYLPFILEQIESQPKRQYL 909 (1233)
T ss_pred HhhhhhcCchHhHHHHHHHHHhcchHhHHH
Confidence 999987778888876643333333344443
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.31 E-value=3e-06 Score=77.32 Aligned_cols=81 Identities=30% Similarity=0.284 Sum_probs=64.2
Q ss_pred HHH-ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHH
Q 035871 761 LIL-QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDK 839 (1127)
Q Consensus 761 ~~l-~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ 839 (1127)
..+ .++++.||..|+.+|+.++... ++..+ ..+++|+++.||.+|+++||.+. + ..
T Consensus 6 ~~l~~~~~~~vr~~a~~~L~~~~~~~-----------~~~~L-~~~l~d~~~~vr~~a~~aL~~i~-------~----~~ 62 (88)
T PF13646_consen 6 QLLQNDPDPQVRAEAARALGELGDPE-----------AIPAL-IELLKDEDPMVRRAAARALGRIG-------D----PE 62 (88)
T ss_dssp HHHHTSSSHHHHHHHHHHHHCCTHHH-----------HHHHH-HHHHTSSSHHHHHHHHHHHHCCH-------H----HH
T ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHh-----------HHHHH-HHHHcCCCHHHHHHHHHHHHHhC-------C----HH
Confidence 344 7889999999999999998653 23333 46679999999999999999882 2 46
Q ss_pred HHHHHHHhcCC-CCcchhchHHHHHH
Q 035871 840 FIHAVEINTHD-PLVSVRITASWALA 864 (1127)
Q Consensus 840 ai~aLl~~l~D-~~~~VRikAAWALG 864 (1127)
+++.|...+.| ++..||..|++|||
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 77888887765 45667999999997
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.12 E-value=3.3e-05 Score=92.56 Aligned_cols=100 Identities=22% Similarity=0.195 Sum_probs=76.5
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-ccccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQV 830 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L 830 (1127)
..+++. +-.-++++++.+|+.|.+++++|+...+ .+.++.. +..++.|++|.||.+|+-++..+. .+|.+
T Consensus 78 ~l~~n~-l~kdl~~~n~~~~~lAL~~l~~i~~~~~-------~~~l~~~-v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~ 148 (526)
T PF01602_consen 78 ILIINS-LQKDLNSPNPYIRGLALRTLSNIRTPEM-------AEPLIPD-VIKLLSDPSPYVRKKAALALLKIYRKDPDL 148 (526)
T ss_dssp HHHHHH-HHHHHCSSSHHHHHHHHHHHHHH-SHHH-------HHHHHHH-HHHHHHSSSHHHHHHHHHHHHHHHHHCHCC
T ss_pred HHHHHH-HHHhhcCCCHHHHHHHHhhhhhhcccch-------hhHHHHH-HHHHhcCCchHHHHHHHHHHHHHhccCHHH
Confidence 344554 3356889999999999999999985442 2334443 447778999999999999999986 44444
Q ss_pred ccchHHHHH-HHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 831 SQSAEIIDK-FIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 831 ~~d~~fv~~-ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
+.. +++.+...+.|+++.|+..|.-+|..+
T Consensus 149 ------~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 149 ------VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ------HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 344 578888888999999999999999988
No 26
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00014 Score=87.52 Aligned_cols=226 Identities=21% Similarity=0.192 Sum_probs=150.8
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cc--cccc--cc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CF--PQVS--QS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~--p~L~--~d 833 (1127)
|.....+-++.||+.|+.+|=.++. .| .||+ .|.+.. ...+.|++..||.||++.+-+|. .+ |.-+ ++
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~-kL~~----~~Y~~A-~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GF-KLSK----ACYSRA-VKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cc-cccH----HHHHHH-HHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 3345567789999999999888776 43 5664 233322 25679999999999999998886 44 2222 23
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh---hhh-----c-cc---------c-----cCCC-CCCcc----
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDS---IRH-----C-ID---------D-----FAFK-PSIDS---- 885 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~---L~~-----~-~~---------~-----~~~~-~~~~~---- 885 (1127)
...+.++-..++.++.|-+..||..||-+||.+... ++. . |. + +... =+.+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 334556667788899999999999999999988763 111 0 00 0 0000 00000
Q ss_pred cccHHH----HHHHHH-----HHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC
Q 035871 886 NANSHL----MASLTE-----SALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG 955 (1127)
Q Consensus 886 ~is~~l----L~~L~e-----~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~ 955 (1127)
.++.+. -..++. +.+...+|.- .||.+||.+++.|.. -.+.+.+++++-|++-++|.
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~-------------ssP~FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT-------------SSPGFAVRALDFLVDMFNDE 422 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc-------------CCCCcHHHHHHHHHHHhccH
Confidence 011110 011111 1122234544 699999999999951 12345789999999999999
Q ss_pred CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 956 NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 956 n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+.||--|.+||-.+-.+=.|. +.-.++.+..|. +.+-+||-..=.=|+
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~i~-------eeql~~il~~L~-D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLAIR-------EEQLRQILESLE-DRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHHHHheec-------HHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 9999999999998887774333 556788899995 578899988777776
No 27
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.10 E-value=3.3e-06 Score=71.53 Aligned_cols=55 Identities=29% Similarity=0.317 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 811 ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 811 ~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
|.||.+|+++||.+. ..+-.....++..+++.|...++|++..||.+|+||||||
T Consensus 1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 579999999999964 1111223447788999999999999999999999999997
No 28
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.08 E-value=0.085 Score=66.71 Aligned_cols=504 Identities=17% Similarity=0.200 Sum_probs=245.2
Q ss_pred chhhhhhhHHHHHHHHH-HHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCC--
Q 035871 386 DSVQSSKVRVAALVCLQ-DLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGP-- 462 (1127)
Q Consensus 386 ~r~~~skVR~~AL~~L~-al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gs-- 462 (1127)
++...+..++.||.+|. +|+.+.|+.|+.|-+.+.| +++.-..||-+|+-..|+-+...+..-.
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~-------------~v~~aV~d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSP-------------PVVAAVGDPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhh-------------HHHHHhcCchHhhhHHHHHHHHHHHHHhcc
Confidence 45567889999999998 5667788999988877653 4466789999999999988887763221
Q ss_pred ---------chhhhhhhh---------hcc-ccCCcccccchH---HHHHHH-HHHHHHHHHHHhcccchHHHHHHHHHH
Q 035871 463 ---------STVFLQVAE---------YKE-SIKCGSFMPLST---SYGHII-MQLHNGIIYLIQRETHDRLLASLFKIL 519 (1127)
Q Consensus 463 ---------k~~llq~AE---------~~e-s~~~~SFTsfS~---tLg~~l-~eLHr~Ll~aL~~E~~~~vLtqlLKcL 519 (1127)
++|+-.+-. +.+ .-+-+.-+-++. .+|.++ .++-++|...+.+=.+-.+.....|++
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAl 633 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKAL 633 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHH
Confidence 222221100 000 000111111111 122222 455556665555555555555566666
Q ss_pred HHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCC
Q 035871 520 MPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVD 597 (1127)
Q Consensus 520 a~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~ 597 (1127)
... ...|-+==....+.+++..+..+++.. +-+++.+.++.+..++.... ...+..+.++.|++
T Consensus 634 t~I-a~S~l~i~l~~~l~~il~~l~~flrK~------~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~------- 699 (1233)
T KOG1824|consen 634 TLI-AMSPLDIDLSPVLTEILPELASFLRKN------QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELP------- 699 (1233)
T ss_pred HHH-HhccceeehhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh-------
Confidence 533 333321111223444444444444321 12355555555555553322 22222233333321
Q ss_pred CcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccch
Q 035871 598 KRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGE 677 (1127)
Q Consensus 598 ~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~ 677 (1127)
.|+..++ ..+--.|+-+|.-++.++|..+..+-..+.+-+..+++.-. ++|
T Consensus 700 -------~Lisesd----lhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl-----------------lqg- 750 (1233)
T KOG1824|consen 700 -------PLISESD----LHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL-----------------LQG- 750 (1233)
T ss_pred -------hhhhHHH----HHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc-----------------ccc-
Confidence 1111110 22334567788888999999998888777766666664211 222
Q ss_pred hHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccc----------hhhhhhhhhhhhcc
Q 035871 678 KVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQES----------SEDIKESAKAFQSG 747 (1127)
Q Consensus 678 ~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~----------~~~~~~~~~~~~l~ 747 (1127)
. |...+.+..-+++. .+..+++...+ .....+|-|++.. ...|..-+. +.
T Consensus 751 ~----al~~~l~~f~alV~-t~~~~l~y~~l------------~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt-~~-- 810 (1233)
T KOG1824|consen 751 G----ALSALLLFFQALVI-TKEPDLDYISL------------LSLLTAPVYEQVTDGLHKQAYYSIAKCVAALT-CA-- 810 (1233)
T ss_pred h----HHHHHHHHHHHHHh-cCCCCccHHHH------------HHHHcCCcccccccchhHHHHHHHHHHHHHHH-Hh--
Confidence 1 11111122222322 11111111111 1112344455431 101110000 00
Q ss_pred hhhhHHHHHhhHHHHHc--cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 748 SEQWSEMIEKHMPLILQ--HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 748 ~~~W~~iie~~Lp~~l~--d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
++.=..-+-+-|..-++ ..+..+|--|.=.||.+|-.. .-.| .+++- .++..+++..+..|++||.-|||.+.
T Consensus 811 ~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~-~~s~--~~e~~--~~iieaf~sp~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 811 CPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRK-DLSP--QNELK--DTIIEAFNSPSEDVKSAASYALGSLA 885 (1233)
T ss_pred ccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCC-CCCc--chhhH--HHHHHHcCCChHHHHHHHHHHhhhhh
Confidence 00000111111222333 234567777777788877543 1112 12221 13446778899999999999999984
Q ss_pred cccccccchHHH-------------------------------------HHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 826 CFPQVSQSAEII-------------------------------------DKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 826 ~~p~L~~d~~fv-------------------------------------~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
. ++-..|+ ++.-.-|.+..+....-+|.=-|.-||.++-
T Consensus 886 v----gnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l 961 (1233)
T KOG1824|consen 886 V----GNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL 961 (1233)
T ss_pred c----CchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh
Confidence 2 2222121 1111111122222222333333333333331
Q ss_pred hhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHH
Q 035871 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQAL 948 (1127)
Q Consensus 869 ~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aL 948 (1127)
++ +..++.+|=. . ........|+.+|-|.-... ..++ .++ + ...+..|...
T Consensus 962 ----------~e-------pesLlpkL~~-~--~~S~a~~~rs~vvsavKfsi---sd~p--~~i---d-~~lk~~ig~f 1012 (1233)
T KOG1824|consen 962 ----------IE-------PESLLPKLKL-L--LRSEASNTRSSVVSAVKFSI---SDQP--QPI---D-PLLKQQIGDF 1012 (1233)
T ss_pred ----------CC-------hHHHHHHHHH-H--hcCCCcchhhhhhheeeeee---cCCC--Ccc---C-HHHHHHHHHH
Confidence 01 1122333211 1 12333456666666554332 1110 010 1 2467778889
Q ss_pred HHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 035871 949 VSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAAL 1011 (1127)
Q Consensus 949 lk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL 1011 (1127)
++.++|++.+||--|-.++-..-.|. +..-..+++.|+..|-+ .-|||-.=..-.
T Consensus 1013 l~~~~dpDl~VrrvaLvv~nSaahNK------pslIrDllpeLLp~Ly~--eTkvrkelIreV 1067 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSAAHNK------PSLIRDLLPELLPLLYS--ETKVRKELIREV 1067 (1233)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHccC------HhHHHHHHHHHHHHHHH--hhhhhHhhhhhh
Confidence 99999999999999999998877774 22346688888888853 457886654443
No 29
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0071 Score=72.46 Aligned_cols=452 Identities=17% Similarity=0.173 Sum_probs=237.9
Q ss_pred hhHHHHHHHHH-HHHhhCC---ccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhh
Q 035871 392 KVRVAALVCLQ-DLCRADP---KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFL 467 (1127)
Q Consensus 392 kVR~~AL~~L~-al~k~~~---K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~ll 467 (1127)
.+|+.|-..|. .|.-.+| |..-.-|-.+-|+... +-.++.--.|.-|.|+.=.+|++++++|=+=
T Consensus 56 ~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~-----qvK~~al~aL~s~epr~~~~Aaql~aaIA~~------ 124 (858)
T COG5215 56 QLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKE-----QVKGMALRALKSPEPRFCTMAAQLLAAIARM------ 124 (858)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHH-----HHHHHHHHHhcCCccHHHHHHHHHHHHHHHh------
Confidence 58888877776 6776666 3467778876666531 2235556678899999999999999887211
Q ss_pred hhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHh-HhcccCCCCCCCchHHHHHHHHHH
Q 035871 468 QVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPL-ISCTPYSRMPGELMPNLIISLRAR 546 (1127)
Q Consensus 468 q~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~L-Vq~TPY~RL~~~Ll~~vv~~l~~~ 546 (1127)
|- +.+.+- ++-..+..-.-+|.-....-+-|-.++.- .+..| +-+...-+.+.--
T Consensus 125 ---El----p~~~wp-----------~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P------e~li~~sN~il~a 180 (858)
T COG5215 125 ---EL----PNSLWP-----------GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP------EDLIQMSNVILFA 180 (858)
T ss_pred ---hC----ccccch-----------HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH------HHHHHHhhHHHHH
Confidence 00 000110 11111222222232222211111111111 22222 1111111111111
Q ss_pred HhhcC-CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHH
Q 035871 547 IEEGF-PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQA 625 (1127)
Q Consensus 547 i~~~~-~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQv 625 (1127)
|..+- .+.++ .++|-++|.||-.- ...|+..++.|.. .+ .+-+..=..-+.....+...|+-+
T Consensus 181 iv~ga~k~et~-~avRLaaL~aL~ds------l~fv~~nf~~E~e-------rN--y~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 181 IVMGALKNETT-SAVRLAALKALMDS------LMFVQGNFCYEEE-------RN--YFMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred HHHhhcccCch-HHHHHHHHHHHHHH------HHHHHHhhcchhh-------hc--hhheeeehhccCCcHHHHHHHHHH
Confidence 22222 22233 46887888777531 1234433332211 00 111110001123345788889999
Q ss_pred HHHHHhhChhhhhhhHHHHH-HHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHH-hhhcccCcccc
Q 035871 626 LRAVSHNYPNIMSSYWQQVS-TIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLR-AISGFKGTEDL 703 (1127)
Q Consensus 626 L~ala~~yp~l~~~~~~~l~-~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lr-a~~g~~g~~~~ 703 (1127)
|.++.+-|...+++|.+... ...-..++. ..|++...|+..-..+.- -+-|
T Consensus 245 l~kim~LyY~fm~~ymE~aL~alt~~~mks--------------------~nd~va~qavEfWsticeEeid~------- 297 (858)
T COG5215 245 LNKIMMLYYKFMQSYMENALAALTGRFMKS--------------------QNDEVAIQAVEFWSTICEEEIDG------- 297 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------cchHHHHHHHHHHHHHHHHHhhh-------
Confidence 99999999999999988532 222222211 223554444332210000 0000
Q ss_pred ccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHc-----cCC-----hhHHHH
Q 035871 704 LDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQ-----HIS-----SMVRTA 773 (1127)
Q Consensus 704 ~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~-----d~~-----~~VRaa 773 (1127)
.+.+ .+.+.+|. |.+ .|=...+-.+||.+|. +++ =.+-.+
T Consensus 298 ---~~e~-------------------------~~~pe~p~-qn~-~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 298 ---EMED-------------------------KYLPEVPA-QNH-GFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred ---HHHH-------------------------hhcccCch-hhc-chHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 0000 00001111 111 1222333445665552 333 246677
Q ss_pred HHHHHhccchhHHhhcchhHHHH-HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCC
Q 035871 774 AVTCFAGITSSVFFSLLKETQEF-IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPL 852 (1127)
Q Consensus 774 Ac~cLa~Igs~~f~~Lp~~~q~~-~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~ 852 (1127)
|..||-- |.++-.++... +.. .+..-...++..=|-+|+-|+|.+--=|+-.--.-+|..+++.|+..+.|++
T Consensus 348 A~sCLql-----faq~~gd~i~~pVl~-FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~ 421 (858)
T COG5215 348 ASSCLQL-----FAQLKGDKIMRPVLG-FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC 421 (858)
T ss_pred HHHHHHH-----HHHHhhhHhHHHHHH-HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence 7777753 54544433221 222 3445567889999999999999886544443335567888999999999999
Q ss_pred cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCC
Q 035871 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 853 ~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
.-|+.++||++|.|.|.+....+ | ...+.....+.+--..|++++..|-.++.-|+.--+..-. +.
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~-----p-------~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~--~~ 487 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIIS-----P-------CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAV--RE 487 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcC-----c-------cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhh--cc
Confidence 99999999999999998654321 1 0112223333333357999999999999888863332210 01
Q ss_pred CCCCChhHHHHHHHHHHHhhc--cCCccchhhHHHHHHhhh
Q 035871 933 ASLGDSRWLERIVQALVSCVT--TGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~--~~n~KVRWNAc~ALGnl~ 971 (1127)
+..-=..+.+.++++|++.-+ .+....|-.+=.|||-+.
T Consensus 488 ~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli 528 (858)
T COG5215 488 VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI 528 (858)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 000001246788888888753 455788888999999885
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0076 Score=73.30 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=115.3
Q ss_pred HHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh------cccccccchHHHHHHHHHHH
Q 035871 772 TAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS------CFPQVSQSAEIIDKFIHAVE 845 (1127)
Q Consensus 772 aaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv------~~p~L~~d~~fv~~ai~aLl 845 (1127)
++|.|.|+|+= +++--..+.. ++-..+..++.-||-|++-|||-+. ++|-| ...++-++
T Consensus 376 AAaLDVLanvf-------~~elL~~l~P-lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-------peLip~l~ 440 (885)
T KOG2023|consen 376 AAALDVLANVF-------GDELLPILLP-LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-------PELIPFLL 440 (885)
T ss_pred HHHHHHHHHhh-------HHHHHHHHHH-HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-------HHHHHHHH
Confidence 67788888852 2222233444 5566677899999999999999984 33333 45778888
Q ss_pred HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhcc
Q 035871 846 INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFV 924 (1127)
Q Consensus 846 ~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l 924 (1127)
..+.|+.+.||.-.+|.|+..+.-..... ..+.+..+++..++..-|+. ||.--|+.|..-+-.-+
T Consensus 441 ~~L~DKkplVRsITCWTLsRys~wv~~~~-------------~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 441 SLLDDKKPLVRSITCWTLSRYSKWVVQDS-------------RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHhccCccceeeeeeeeHhhhhhhHhcCC-------------hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999998654311 23455666666666555555 79999999998874332
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHhhc---cCCccchhhHHHHHHhh
Q 035871 925 KYTSSSHPASLGDSRWLERIVQALVSCVT---TGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 925 ~~~~~~~~~~~g~~~~~E~~i~aLlk~l~---~~n~KVRWNAc~ALGnl 970 (1127)
..+-. ...+.+.+.|.++.. .+|.++=+-|.-.|..-
T Consensus 508 ~~eLV---------p~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 508 GEELV---------PYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred cchhH---------HHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 22211 147888888888874 68999999988887654
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.95 E-value=1.2e-05 Score=76.18 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=76.3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchh-HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKE-TQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~-~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
|...++++++.+|..|+.||+++.... ...... .+..++.. +...+.|+++.||..|+++|++++..+.-......-
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~-l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 89 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPA-LVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHH-HHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 445678888999999999999987531 000011 11134443 346778999999999999999997544311111111
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
..+++.++..+.+++..||..|.|+|+|||.
T Consensus 90 ~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 90 AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 2367888888999999999999999999973
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=97.90 E-value=0.0029 Score=79.94 Aligned_cols=204 Identities=16% Similarity=0.182 Sum_probs=140.9
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
..+..+..+|..+.=.+.+++.. ..+.-..+++++. .=+.|.||.||+.|.|+||.+ ....+++..+
T Consensus 76 ~~~S~d~elKKLvYLYL~~ya~~-----~pelalLaINtl~-KDl~d~Np~IRaLALRtLs~I-------r~~~i~e~l~ 142 (746)
T PTZ00429 76 LAPSTDLELKKLVYLYVLSTARL-----QPEKALLAVNTFL-QDTTNSSPVVRALAVRTMMCI-------RVSSVLEYTL 142 (746)
T ss_pred HhCCCCHHHHHHHHHHHHHHccc-----ChHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHcC-------CcHHHHHHHH
Confidence 55667788888887777765431 1233345667654 556889999999999999987 3456778888
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc-HHHHHHHHHHHHhhccCCc-hhhhhHHHHHhh
Q 035871 842 HAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN-SHLMASLTESALNLTKDGD-KIKSNAVRGLGN 919 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is-~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGn 919 (1127)
.+|.+.+.|+++-||-+||.+++++-..-. + .+. ..++..|.+ +..|.| -|..||+.+|-.
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~p---e----------lv~~~~~~~~L~~----LL~D~dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDM---Q----------LFYQQDFKKDLVE----LLNDNNPVVASNAAAIVCE 205 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---c----------cccccchHHHHHH----HhcCCCccHHHHHHHHHHH
Confidence 999999999999999999999999865210 0 111 122333333 235666 799999999998
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
+...-+ ..-.+....+..|+..+.+-+ -|.-++-|.-+.+-. + .+..-+..+++.+...++ +.
T Consensus 206 I~~~~~----------~~l~l~~~~~~~Ll~~L~e~~---EW~Qi~IL~lL~~y~--P-~~~~e~~~il~~l~~~Lq-~~ 268 (746)
T PTZ00429 206 VNDYGS----------EKIESSNEWVNRLVYHLPECN---EWGQLYILELLAAQR--P-SDKESAETLLTRVLPRMS-HQ 268 (746)
T ss_pred HHHhCc----------hhhHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHHhc-CC
Confidence 842110 111245667777887776544 799998887775421 1 122335667888888885 57
Q ss_pred ChHHHHHHHHHhc
Q 035871 1000 NFKIRIQAAAALA 1012 (1127)
Q Consensus 1000 NFKVRi~AA~AL~ 1012 (1127)
|--|-..|+.++.
T Consensus 269 N~AVVl~Aik~il 281 (746)
T PTZ00429 269 NPAVVMGAIKVVA 281 (746)
T ss_pred CHHHHHHHHHHHH
Confidence 8899999999986
No 33
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.84 E-value=1.2e-05 Score=68.10 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=43.2
Q ss_pred hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhh
Q 035871 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 908 KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl 970 (1127)
.||.+|+.+||++.+..+.. .......+++.|+..++|.+.+||++||+|||+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~---------~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPEL---------LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHH---------HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHH---------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 59999999999975322221 1235678899999999999899999999999986
No 34
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=3.5e-05 Score=87.39 Aligned_cols=235 Identities=22% Similarity=0.225 Sum_probs=140.7
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHH----HHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISS----LIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~----Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
++.++-+-.+-.||.-|..+|.+|+-.. +.|..++.. ++..+++..|+.||..++.|+|++..--.-+.-
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~------EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSR------ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhh------hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 4444444456789999999999987543 333333321 344778999999999999999998531111100
Q ss_pred -hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh-----cccccC-----CCCCCcc-----------------
Q 035871 834 -AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRH-----CIDDFA-----FKPSIDS----------------- 885 (1127)
Q Consensus 834 -~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~-----~~~~~~-----~~~~~~~----------------- 885 (1127)
..-=-+.+++|...++|++..|+..|+-||+||..--.- .....+ ++.++..
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 000025788999999999999999999999999862100 000000 0000000
Q ss_pred ---ccc-HHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh
Q 035871 886 ---NAN-SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961 (1127)
Q Consensus 886 ---~is-~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW 961 (1127)
.+- ...+..|+. +-.++|++.++.+|+..|-||.. ..++.. .+..| ..+|+.|+..+.|+.+.||-
T Consensus 325 Ne~lI~dagfl~pLVr--lL~~~dnEeiqchAvstLrnLAa--sse~n~-~~i~e-----sgAi~kl~eL~lD~pvsvqs 394 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVR--LLRAGDNEEIQCHAVSTLRNLAA--SSEHNV-SVIRE-----SGAIPKLIELLLDGPVSVQS 394 (550)
T ss_pred cccceecccchhHHHH--HHhcCCchhhhhhHHHHHHHHhh--hhhhhh-HHHhh-----cCchHHHHHHHhcCChhHHH
Confidence 000 011111221 11257999999999999999962 122210 00001 24788888888999877765
Q ss_pred --hHHHHHHhhhcccccc--ccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 962 --NVCRALSNLFLNETIN--LEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 962 --NAc~ALGnl~~n~~i~--~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
.||.|. +-.|+... +.+. -+.+.|+-.. .+.+-.||-|||.||+.-.
T Consensus 395 eisac~a~--Lal~d~~k~~lld~----gi~~iLIp~t-~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 395 EISACIAQ--LALNDNDKEALLDS----GIIPILIPWT-GSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHHHHH--HHhccccHHHHhhc----CCcceeeccc-CccchhhcccHHHHHHhhh
Confidence 555554 44443322 1111 1455666666 5688899999999998543
No 35
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=5.8e-05 Score=85.72 Aligned_cols=211 Identities=22% Similarity=0.246 Sum_probs=129.4
Q ss_pred HHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-------ccccccchHHHHHHHHH
Q 035871 771 RTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC-------FPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 771 RaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-------~p~L~~d~~fv~~ai~a 843 (1127)
..+|.=+++.|+....-+.+++.-+-+ +.++...++-+.-+|+.++|++.. .-++.. .+.
T Consensus 64 qrsaalafAeitek~vr~Vsres~epv-----l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~G--------l~~ 130 (550)
T KOG4224|consen 64 QRSAALAFAEITEKGVRRVSRESNEPV-----LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLG--------LDL 130 (550)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhHH-----HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccC--------hHH
Confidence 344444677766554444444333332 345677889999999999998742 111211 234
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccH-HHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS-HLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~-~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
|+..+.-+...||.+|.=-+-|+... -.+.. .+.. ..| +-.+++.+-+| .|++||.-||-||-
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~----------kiA~sGaL----~pltrLakskdirvqrnatgaLlnmT 195 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATF-DSNKV----------KIARSGAL----EPLTRLAKSKDIRVQRNATGALLNMT 195 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhcc-ccchh----------hhhhccch----hhhHhhcccchhhHHHHHHHHHHHhh
Confidence 55555666778998876333333321 00000 0000 012 22334456555 89999999999883
Q ss_pred hccccCCCCCCCCCCChh--HHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 922 RFVKYTSSSHPASLGDSR--WLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~--~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
|+- +++. .--..++.|++.+..+|..||.-+|+|+||+.-.+.-.-.-..--+.++++|..+. ++.
T Consensus 196 ------hs~-----EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lm-d~~ 263 (550)
T KOG4224|consen 196 ------HSR-----ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLM-DDG 263 (550)
T ss_pred ------hhh-----hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHH-hCC
Confidence 211 1111 11235778999999999999999999999997443221000112356999999999 668
Q ss_pred ChHHHHHHHHHhcCCCcccccC
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYG 1021 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG 1021 (1127)
.-||+.+|+.||+...+-..|-
T Consensus 264 s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 264 SDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ChHHHHHHHHHHhhhcccchhh
Confidence 8899999999999877655554
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.70 E-value=4.6e-05 Score=72.17 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=71.0
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcc-cccccchHHHH-HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCF-PQVSQSAEIID-KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv~-~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
...++|.++.+|..|+++||+++.. |.... .+++ .+++.++..+.|++..||..|+|+|+||+..-......
T Consensus 13 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~---- 86 (120)
T cd00020 13 VSLLSSSDENVQREAAWALSNLSAGNNDNIQ--AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI---- 86 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH----
Confidence 3567888899999999999999754 33222 2233 67788888999999999999999999998642111000
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHHHhhhh
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRGLGNLS 921 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl 921 (1127)
......+..++ +..++. .++|..|..+|+||.
T Consensus 87 -----~~~~g~l~~l~----~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 -----VLEAGGVPKLV----NLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----HHHCCChHHHH----HHHhcCCHHHHHHHHHHHHHhh
Confidence 00011233333 334544 489999999999984
No 37
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.05 Score=71.49 Aligned_cols=492 Identities=15% Similarity=0.204 Sum_probs=259.3
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.=|.+|..=+.+|++.-.-.+-.|.++++|---. -=.||++|||.+-.+.=-+|...+|. -+.+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyR-------------Y~yDP~~~Vq~aM~sIW~~Li~D~k~---~vd~ 1035 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYR-------------YQYDPDKKVQDAMTSIWNALITDSKK---VVDE 1035 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhh-------------hccCCcHHHHHHHHHHHHHhccChHH---HHHH
Confidence 4577888888888887766788899999986631 23699999999888777777777654 2333
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
| +.|+-+-|+-.|-. +.=++....+=+|+-|++.-|++.+. +-+|++|.++...--
T Consensus 1036 y-------------------~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~-e~lpelw~~~fRvmD--- 1091 (1702)
T KOG0915|consen 1036 Y-------------------LNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVK-EKLPELWEAAFRVMD--- 1091 (1702)
T ss_pred H-------------------HHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHHHHHHH---
Confidence 3 33444444433322 33346677777888899999998874 556789988654221
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcc-hhHHHHHhhh--hcCC--CCchHhHHHHHH
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRS-GVLFTLLQCS--ERLA--SPAICFESLQAL 626 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s-~~L~~Ll~~~--~~~~--~~~vRlEAlQvL 626 (1127)
|.++ .+|.||=.....+-+ +...-+ .+..+... ..+..++.+. ++.+ -..||-=|+.++
T Consensus 1092 -DIKE--sVR~aa~~~~~~lsK----------l~vr~~---d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1092 -DIKE--SVREAADKAARALSK----------LCVRIC---DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTL 1155 (1702)
T ss_pred -HHHH--HHHHHHHHHHHHHHH----------HHhhhc---ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHH
Confidence 2333 256555432222111 100000 00111111 1344444432 1212 136899999999
Q ss_pred HHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccc
Q 035871 627 RAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDD 706 (1127)
Q Consensus 627 ~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~ 706 (1127)
..++++++..+.+|...+.-.+.+.+...++.. .++-..|........+|. +|+. +.++.
T Consensus 1156 ~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v------------LnYls~r~~~~e~ealDt-~R~s-~akss------ 1215 (1702)
T KOG0915|consen 1156 MDLAKSSGKELKPHFPKLIPLLLNAYSELEPQV------------LNYLSLRLINIETEALDT-LRAS-AAKSS------ 1215 (1702)
T ss_pred HHHHHhchhhhcchhhHHHHHHHHHccccchHH------------HHHHHHhhhhhHHHHHHH-HHHh-hhcCC------
Confidence 999999999999999987766666643322211 011111111122333443 3432 11211
Q ss_pred cccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccC------------ChhHHHHH
Q 035871 707 KLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHI------------SSMVRTAA 774 (1127)
Q Consensus 707 ~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~------------~~~VRaaA 774 (1127)
.+++ .+.+|+..+ + ..++|.++|+.++-. ...|---+
T Consensus 1216 pmme--Ti~~ci~~i-------------------------D----~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1216 PMME--TINKCINYI-------------------------D----ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred cHHH--HHHHHHHhh-------------------------h----HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence 1111 122333221 1 356777888877632 12233333
Q ss_pred HHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcc
Q 035871 775 VTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS 854 (1127)
Q Consensus 775 c~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~ 854 (1127)
.++...|++-+ ...+..+ +...+|.|++||-+=+-|.|.+..|.+..+--..++.++..++.-.+++. .
T Consensus 1265 ~r~~~emtP~s---------gKll~al-~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-s 1333 (1702)
T KOG0915|consen 1265 QRLGSEMTPYS---------GKLLRAL-FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-S 1333 (1702)
T ss_pred HHhccccCcch---------hHHHHHH-hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-c
Confidence 44444444432 3344433 35579999999999999999999888776554445555555543333333 5
Q ss_pred hhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCC
Q 035871 855 VRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPAS 934 (1127)
Q Consensus 855 VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~ 934 (1127)
++.+-.-=++|-.-.+..+.. + . +..++-- +..+.+ ++.-++
T Consensus 1334 iscatis~Ian~s~e~Lkn~a--------s-----a-ILPLiFL---a~~ee~-------Ka~q~L-------------- 1375 (1702)
T KOG0915|consen 1334 ISCATISNIANYSQEMLKNYA--------S-----A-ILPLIFL---AMHEEE-------KANQEL-------------- 1375 (1702)
T ss_pred hhHHHHHHHHHhhHHHHHhhH--------H-----H-HHHHHHH---HHhHHH-------HHHHHH--------------
Confidence 554444323333322222111 1 1 1111110 112211 111111
Q ss_pred CCChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 935 LGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 935 ~g~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
-+.+-..+.. |...|| ++ -..+.+.+|..+.++.-||+|.+||.++..
T Consensus 1376 ----------w~dvW~e~vsggagtvr---------l~------------~~eiLn~iceni~nn~~w~lr~q~Akai~~ 1424 (1702)
T KOG0915|consen 1376 ----------WNDVWAELVSGGAGTVR---------LY------------LLEILNLICENITNNESWKLRKQAAKAIRV 1424 (1702)
T ss_pred ----------HHHHHHHhCCCCcchhh---------hh------------HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 0111111112 222222 11 234777888888888889999999999986
Q ss_pred CCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 035871 1014 PSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFKVLCSSLGE 1076 (1127)
Q Consensus 1014 p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~~~~~~~~~ 1076 (1127)
...+..---.++.+.+-...-++.+.+ -. |-=+.-+.+.++..++..+..+..+|..
T Consensus 1425 ~a~~~sss~~~p~ilkl~~~ll~~L~G---Ri---wdGKe~iLKAl~~~~~a~~~~v~~~~~s 1481 (1702)
T KOG0915|consen 1425 IAEGLSSSAPIPVILKLALSLLDTLNG---RI---WDGKEEILKALASAFEAGLADVKRNMSS 1481 (1702)
T ss_pred HcccccccCChHHHHHHHHHHHHHhhc---cc---cccHHHHHHHHHHHHHHhHHHHHHhchH
Confidence 543332222344555544444554432 11 2223445566777777666666666663
No 38
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0033 Score=69.68 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=139.0
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
.+.|.+....--+.=|||+++.+. .+ ..++. ++ . ..+..|.||-.|+.|||.+. .| ...
T Consensus 44 a~~d~s~llkhe~ay~LgQ~~~~~--Av-----~~l~~-vl-~-desq~pmvRhEAaealga~~-~~----------~~~ 102 (289)
T KOG0567|consen 44 AFIDDSALLKHELAYVLGQMQDED--AV-----PVLVE-VL-L-DESQEPMVRHEAAEALGAIG-DP----------ESL 102 (289)
T ss_pred hcccchhhhccchhhhhhhhccch--hh-----HHHHH-Hh-c-ccccchHHHHHHHHHHHhhc-ch----------hhH
Confidence 344444455556667888887643 11 22222 11 1 24578999999999999984 22 333
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcc--cccCCCCCCccccc--HHHHHHHHHHHHhhccCCchhhhhHHHHH
Q 035871 842 HAVEINTHDPLVSVRITASWALANICDSIRHCI--DDFAFKPSIDSNAN--SHLMASLTESALNLTKDGDKIKSNAVRGL 917 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~--~~~~~~~~~~~~is--~~lL~~L~e~aL~a~~D~DKVRsnAvRAL 917 (1127)
+.+-+..+||...||-.---|+..+...-.... ...++.. ++...+ ..-+..|-+..+..+ ...-=|.-|..+|
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S-vdPa~p~~~ssv~~lr~~lld~t-~~l~~Ry~amF~L 180 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS-VDPAPPANLSSVHELRAELLDET-KPLFERYRAMFYL 180 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc-CCCCCccccccHHHHHHHHHhcc-hhHHHHHhhhhHh
Confidence 444444589999999998889988876422111 1111111 121111 111333333322222 2234566778888
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
.|++ -|.+|.+|++.+.+++.=.|--++|-+|++-.. ..++.|.+.|.+
T Consensus 181 Rn~g-------------------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~------------~ai~~L~k~L~d 229 (289)
T KOG0567|consen 181 RNIG-------------------TEEAINALIDGLADDSALFRHEVAFVFGQLQSP------------AAIPSLIKVLLD 229 (289)
T ss_pred hccC-------------------cHHHHHHHHHhcccchHHHHHHHHHHHhhccch------------hhhHHHHHHHHh
Confidence 8874 388999999999999999999999999998854 467788888776
Q ss_pred C-CChHHHHHHHHHhcCCCccc-------ccCCchHHHHHHHHHHHHHh
Q 035871 998 S-SNFKIRIQAAAALAVPSSVS-------DYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 998 ~-~NFKVRi~AA~AL~~p~~R~-------~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
. .|--||.-||.|||.++.-. ..|..-+.|-.+..-||+-+
T Consensus 230 ~~E~pMVRhEaAeALGaIa~e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIADEDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcchHHHHHHHHHHHhhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4 46779999999999665311 12333444555566666544
No 39
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.46 E-value=0.13 Score=63.76 Aligned_cols=226 Identities=18% Similarity=0.144 Sum_probs=135.0
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHH-HHHHHHHHhhhccCCCHhHHHHHHHHH-------hhhhccccccc
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQ-EFIISSLIDSALHDDVASVRSAACRAI-------GVISCFPQVSQ 832 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q-~~~i~~Lll~~~~De~~~VRaAA~RAL-------Gvlv~~p~L~~ 832 (1127)
-.|.+.++.||--|++-.|.|..-. ..=.+++- .+|= .++..-+..+.|-|=..-..|| |+--++|-+
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lG-vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi-- 881 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLG-VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI-- 881 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhh-HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh--
Confidence 3568888999998888777653211 11001100 0110 0122223344554444333333 222255555
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKS 911 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRs 911 (1127)
.+.++.|.--|.+....|..+-.=-+|.|||.-. |-++..-+-+++-.++.+.+.+.| +|.
T Consensus 882 -----~dllPrltPILknrheKVqen~IdLvg~Iadrgp-------------E~v~aREWMRIcfeLlelLkahkK~iRR 943 (1172)
T KOG0213|consen 882 -----KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP-------------EYVSAREWMRICFELLELLKAHKKEIRR 943 (1172)
T ss_pred -----hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc-------------ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888899999999989999998511 234544455565556666676665 999
Q ss_pred hHHHHHhhhhhccccCCCC----CCC--------CC---CChhH-----HHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 912 NAVRGLGNLSRFVKYTSSS----HPA--------SL---GDSRW-----LERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~----~~~--------~~---g~~~~-----~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
+|+-.+|.|.+.+-+...- |-+ .| +=... -=.++++|++--+..++.|+=-.-.||..+|
T Consensus 944 aa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 944 AAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred HHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence 9999999999887764410 000 00 00000 1235677777777888999988888988887
Q ss_pred ccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 035871 972 LNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAAL 1011 (1127)
Q Consensus 972 ~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL 1011 (1127)
.- +....-++.-.+.|.|-.++.| ...-=|--|+.+.
T Consensus 1024 ey--igemskdYiyav~PlleDAlmD-rD~vhRqta~~~I 1060 (1172)
T KOG0213|consen 1024 EY--IGEMSKDYIYAVTPLLEDALMD-RDLVHRQTAMNVI 1060 (1172)
T ss_pred HH--HHHHhhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHH
Confidence 42 2222234556677888889965 6676777777654
No 40
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.0019 Score=78.33 Aligned_cols=244 Identities=19% Similarity=0.192 Sum_probs=153.8
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAV 844 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aL 844 (1127)
+.+...|-.+......+|... ..++ ..++.+...++ -..+|.++.||.+|+.+|=.+. +-...-..+....
T Consensus 169 ~~s~~~~~~~~~~~~~lg~~~-ss~~-~d~~~~~~~l~-~~~~~~D~~Vrt~A~eglL~L~------eg~kL~~~~Y~~A 239 (823)
T KOG2259|consen 169 ISSTGNRLLLYCFHLPLGVSP-SSLT-HDREHAARGLI-YLEHDQDFRVRTHAVEGLLALS------EGFKLSKACYSRA 239 (823)
T ss_pred cccccchHHHHHHhhhcccCC-Cccc-ccHHHHHHHHH-HHhcCCCcchHHHHHHHHHhhc------ccccccHHHHHHH
Confidence 334566677777777666432 1222 22444444333 5579999999999999865442 1111112344555
Q ss_pred HHhcCCCCcchhchH---HHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 845 EINTHDPLVSVRITA---SWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 845 l~~l~D~~~~VRikA---AWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
.+.+.|....||..| .|-+||.+-. ..+. +..++...+....++|++ ..|.. .||.-|+.+||.+
T Consensus 240 ~~~lsD~~e~VR~aAvqlv~v~gn~~p~---~~e~----e~~e~kl~D~aF~~vC~~----v~D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 240 VKHLSDDYEDVRKAAVQLVSVWGNRCPA---PLER----ESEEEKLKDAAFSSVCRA----VRDRSLSVRVEAAKALGEF 308 (823)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhcCCC---cccc----hhhhhhhHHHHHHHHHHH----HhcCceeeeehHHHHhchH
Confidence 667899999999777 6778888731 0010 000124455667777775 57887 7999999999998
Q ss_pred hhcccc--------CCCC----------CC---CCCC----ChhH-----------------HHHHHHHHHHhhccCCcc
Q 035871 921 SRFVKY--------TSSS----------HP---ASLG----DSRW-----------------LERIVQALVSCVTTGNVK 958 (1127)
Q Consensus 921 l~~l~~--------~~~~----------~~---~~~g----~~~~-----------------~E~~i~aLlk~l~~~n~K 958 (1127)
.+.-.. +-.+ +| .+.| ..+| -..+..+++..++|.-+.
T Consensus 309 ~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~E 388 (823)
T KOG2259|consen 309 EQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYE 388 (823)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHH
Confidence 433221 0000 00 0000 0001 123457888889999999
Q ss_pred chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHh
Q 035871 959 VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 959 VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
||-+|-++++.+-.+. ++.+...+.-|...+ +|..-.||..|..||.-+..+ +.--.+..+.++++|++.
T Consensus 389 VR~AAV~Sl~~La~ss------P~FA~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~---l~i~eeql~~il~~L~D~ 458 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSS------PGFAVRALDFLVDMF-NDEIEVVRLKAIFALTMISVH---LAIREEQLRQILESLEDR 458 (823)
T ss_pred HHHHHHHHHHHHHcCC------CCcHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH---heecHHHHHHHHHHHHhc
Confidence 9999999999987663 455788888888888 568889999999999755544 322345666677888763
No 41
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0012 Score=74.87 Aligned_cols=222 Identities=19% Similarity=0.259 Sum_probs=134.5
Q ss_pred HHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHH-----HHHHhhhccCCCH---hHHHHHHHHHhhhh--cccc
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFII-----SSLIDSALHDDVA---SVRSAACRAIGVIS--CFPQ 829 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i-----~~Lll~~~~De~~---~VRaAA~RALGvlv--~~p~ 829 (1127)
.++|.+++-.||.-++=|||||-.+. ..-|++++ ..+ ++++....+ .+| -|-|+|.+++ .-|.
T Consensus 163 iqlL~s~~~~V~eQavWALGNiAGDS-----~~~RD~vL~~galepl-L~ll~ss~~~ismlR-n~TWtLSNlcRGknP~ 235 (526)
T COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDS-----EGCRDYVLQCGALEPL-LGLLLSSAIHISMLR-NATWTLSNLCRGKNPP 235 (526)
T ss_pred HHHHcCchHHHHHHHHHHhccccCCc-----hhHHHHHHhcCchHHH-HHHHHhccchHHHHH-HhHHHHHHhhCCCCCC
Confidence 35677888899999999999996554 22344443 333 355554333 345 4568999986 1111
Q ss_pred cccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchh
Q 035871 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKI 909 (1127)
Q Consensus 830 L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKV 909 (1127)
= |-.-+..+++.|-+.+--.+..|-..|.||++-|.|.--..... .++ ..+++. |+|.. +...-+|
T Consensus 236 P--~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~a-vld----~g~~~R----LvElL---s~~sa~i 301 (526)
T COG5064 236 P--DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQA-VLD----VGIPGR----LVELL---SHESAKI 301 (526)
T ss_pred C--chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHH-HHh----cCCcHH----HHHHh---cCccccc
Confidence 1 22235667777766665556678888999999999852221110 001 134444 43321 4555589
Q ss_pred hhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc--ccccccCCCchhHH
Q 035871 910 KSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN--ETINLEDMDWAPSV 987 (1127)
Q Consensus 910 RsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n--~~i~~~~~~wa~~v 987 (1127)
..-|.|+.||+..--+..... -..+| ++.++...|.+.--.+|=-||+-++|+-.- +-+.. --...+
T Consensus 302 qtPalR~vGNIVTG~D~QTqv-iI~~G-------~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqa---vid~nl 370 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQV-IINCG-------ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQA---VIDANL 370 (526)
T ss_pred cCHHHHhhcCeeecCccceeh-heecc-------cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHH---HHhccc
Confidence 999999999996333222100 00122 344555556555457999999999998422 11110 001235
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 988 FSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 988 ~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
+|.|+.++. .-.||+|-.|++|...-
T Consensus 371 iPpLi~lls-~ae~k~kKEACWAisNa 396 (526)
T COG5064 371 IPPLIHLLS-SAEYKIKKEACWAISNA 396 (526)
T ss_pred chHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 688999995 57899999999999743
No 42
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.31 E-value=0.0019 Score=72.07 Aligned_cols=162 Identities=22% Similarity=0.181 Sum_probs=109.4
Q ss_pred CCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccc
Q 035871 808 DDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA 887 (1127)
Q Consensus 808 De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~i 887 (1127)
.++|.++..|.-++|+...||.-++ ...--..++-+...+.||++.||.+|-|||.|+....- +. ..
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~-~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n~-----------~~ 90 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQD-IIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-NQ-----------EQ 90 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHH-HHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-hH-----------HH
Confidence 4789999999999999988885432 11112345677778999999999999999999985421 11 11
Q ss_pred cHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHH
Q 035871 888 NSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967 (1127)
Q Consensus 888 s~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~AL 967 (1127)
-...+..+++..+ ...-+..|...|.|+|+||. .++ .....+-+.|..|+..+..|+.++|-++-..|
T Consensus 91 Ik~~i~~Vc~~~~-s~~lns~~Q~agLrlL~nLt--v~~---------~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 91 IKMYIPQVCEETV-SSPLNSEVQLAGLRLLTNLT--VTN---------DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHccC--CCc---------chhhhHHhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 1233555555432 12235589999999999994 111 11123456788899999999999999999999
Q ss_pred HhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 968 SNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 968 Gnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
.|+-.|++..- .--..++.+.|+.++.
T Consensus 159 ~nLS~np~~~~--~Ll~~q~~~~~~~Lf~ 185 (254)
T PF04826_consen 159 VNLSENPDMTR--ELLSAQVLSSFLSLFN 185 (254)
T ss_pred HHhccCHHHHH--HHHhccchhHHHHHHc
Confidence 99998875420 0011234555555553
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.30 E-value=0.0031 Score=76.65 Aligned_cols=228 Identities=18% Similarity=0.138 Sum_probs=139.0
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhH---HhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccch
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSV---FFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSA 834 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~---f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~ 834 (1127)
.|...|.|+++.||..+|..++++-.+. ...+.. ..++. ++..++.|+|..|..+|+.+|..+..++.-. +.
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~---~~l~~-~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~ 155 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD---NELLP-LIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQ 155 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC---ccHHH-HHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HH
Confidence 5667889999999999999998863221 111111 22343 3457789999999999999999997544321 12
Q ss_pred HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHH--HHHHHHhhccCCc-hhhh
Q 035871 835 EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMAS--LTESALNLTKDGD-KIKS 911 (1127)
Q Consensus 835 ~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~--L~e~aL~a~~D~D-KVRs 911 (1127)
.|-.+....|...+..++..||.+.-+.+.+++..=... .+.+.. +++.+++..+++| -||.
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~---------------~~~~~~sgll~~ll~eL~~dDiLvql 220 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA---------------AEAVVNSGLLDLLLKELDSDDILVQL 220 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH---------------HHHHHhccHHHHHHHHhcCccHHHHH
Confidence 222333566666676778899999999999998531000 011111 3344444456666 6999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhH--HHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHH
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRW--LERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS 989 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~--~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~ 989 (1127)
||+.-|+.|+. .. + | ..+ -..+++.|++.+.+....-|.++-+=.|.+.--..+...++.-....|+
T Consensus 221 nalell~~La~--~~-~-------g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p 289 (503)
T PF10508_consen 221 NALELLSELAE--TP-H-------G-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYP 289 (503)
T ss_pred HHHHHHHHHHc--Ch-h-------H-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHH
Confidence 99999999974 11 1 1 111 1346777888775432222777777656541111111111111223455
Q ss_pred HHHHHHh---cCCChHHHHHHHHHhcCCCc
Q 035871 990 ILLLLLR---DSSNFKIRIQAAAALAVPSS 1016 (1127)
Q Consensus 990 ~Ll~ll~---~~~NFKVRi~AA~AL~~p~~ 1016 (1127)
..+..|. ++.+-..|..|-.+||..++
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 5554443 56888899999999986663
No 44
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.23 E-value=0.077 Score=64.41 Aligned_cols=244 Identities=18% Similarity=0.245 Sum_probs=154.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcch-----hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-c
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLK-----ETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-C 826 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~-----~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~ 826 (1127)
.+++++| .-+.|+.-..|..++..... +|.+||. ...+..+..++.+.-++.+ ..|.+. |
T Consensus 521 ~v~~kil-~~~~De~ep~r~m~a~~vsr----i~~~lg~~~~dErleerl~d~il~Afqeq~~---------t~~~il~~ 586 (975)
T COG5181 521 RVSRKIL-EYYSDEPEPYRKMNAGLVSR----IFSRLGRLGFDERLEERLYDSILNAFQEQDT---------TVGLILPC 586 (975)
T ss_pred HHHHHHH-hhccCCcchhhhhhhHHHHH----HHHhcccccccHHHHHHHHHHHHHHHHhccc---------cccEEEec
Confidence 4566655 45677765556666555443 2334433 3345566655544433332 234432 4
Q ss_pred ccccccchH-----HHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh
Q 035871 827 FPQVSQSAE-----IIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN 901 (1127)
Q Consensus 827 ~p~L~~d~~-----fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~ 901 (1127)
|...-...+ |+.-.+..+++.++.+.++||+.||=-.|-|.-.|..+.+ ...+.++-.....
T Consensus 587 f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-------------~~~l~klg~iLyE 653 (975)
T COG5181 587 FSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-------------TKELAKLGNILYE 653 (975)
T ss_pred ccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-------------HHHHHHHhHHHHH
Confidence 444333322 3566788999999999999999999888888877765543 1224443222222
Q ss_pred hc-cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC
Q 035871 902 LT-KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED 980 (1127)
Q Consensus 902 a~-~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~ 980 (1127)
.. +|.+.|-....-|+-.|-....+... +.+ +..+++.|.--|+++.-||.=|..--+|.+..|..-..+.
T Consensus 654 ~lge~ypEvLgsil~Ai~~I~sv~~~~~m------qpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~ 725 (975)
T COG5181 654 NLGEDYPEVLGSILKAICSIYSVHRFRSM------QPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV 725 (975)
T ss_pred hcCcccHHHHHHHHHHHHHHhhhhccccc------CCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH
Confidence 22 34446766655555555433333322 111 4567778888889999999999999999999887667777
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 981 MDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 981 ~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.+|...-|.- +..|+ +-|-.+|.+|...+|-+.. ..|.+ +|...|+.-|+.
T Consensus 726 rEWMRIcfeL-vd~Lk-s~nKeiRR~A~~tfG~Is~--aiGPq--dvL~~LlnnLkv 776 (975)
T COG5181 726 REWMRICFEL-VDSLK-SWNKEIRRNATETFGCISR--AIGPQ--DVLDILLNNLKV 776 (975)
T ss_pred HHHHHHHHHH-HHHHH-HhhHHHHHhhhhhhhhHHh--hcCHH--HHHHHHHhcchH
Confidence 8999988865 55554 3677899999999985542 56654 777777766653
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.19 E-value=0.0012 Score=69.43 Aligned_cols=91 Identities=25% Similarity=0.301 Sum_probs=76.6
Q ss_pred CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchh
Q 035871 906 GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985 (1127)
Q Consensus 906 ~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~ 985 (1127)
|+.||.|++.+||-|+.- .+...|..++.+.++++|+++-||++|...|..+..++.+ +|.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r-------------~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~ 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-------------YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKG 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-------------CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehh
Confidence 457999999999999611 1235788999999999999999999999999999988644 5788
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 986 ~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
.+|..++.++ .|+|-.||-.|...+....
T Consensus 63 ~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 63 QLFSRILKLL-VDENPEIRSLARSFFSELL 91 (178)
T ss_pred hhhHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 8988888888 4689999999999997544
No 46
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.18 E-value=1 Score=54.86 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCch-hhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPST-VFLQVA 470 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~-~llq~A 470 (1127)
+.=+.|.+++.+|++.+ .=++.||-|+-+.-..... +--..+.+.++.++..+.+.-.| -++|+.
T Consensus 109 r~~~~Aaql~aaIA~~E--lp~~~wp~lm~~mv~nvg~------------eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 109 RFCTMAAQLLAAIARME--LPNSLWPGLMEEMVRNVGD------------EQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHHHHHHHHhh--CccccchHHHHHHHHhccc------------cCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 56678899999998852 2367788877553211100 01125778999999999999887 454421
Q ss_pred hhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH-h--Hhc-ccCCCCCCCchHHHHHHHHHH
Q 035871 471 EYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMP-L--ISC-TPYSRMPGELMPNLIISLRAR 546 (1127)
Q Consensus 471 E~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~-L--Vq~-TPY~RL~~~Ll~~vv~~l~~~ 546 (1127)
- .-+-.....++..|++.++....||||.. | |++ ..|+-=..=++.-|
T Consensus 175 ------------------N---~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv------- 226 (858)
T COG5215 175 ------------------N---VILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV------- 226 (858)
T ss_pred ------------------h---HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee-------
Confidence 0 12333455788999999999999999987 3 443 33321111111111
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHh
Q 035871 547 IEEGFPLKTDQTGLLVAAISCLTAALS 573 (1127)
Q Consensus 547 i~~~~~~~~d~~al~VaaL~cL~avls 573 (1127)
++.. ..+|.. +..++|+||.-++.
T Consensus 227 -ceat-q~~d~e-~q~aafgCl~kim~ 250 (858)
T COG5215 227 -CEAT-QGNDEE-LQHAAFGCLNKIMM 250 (858)
T ss_pred -ehhc-cCCcHH-HHHHHHHHHHHHHH
Confidence 2222 123443 77899999987764
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=97.14 E-value=0.044 Score=69.62 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=108.1
Q ss_pred cCCCHh-HHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcc
Q 035871 807 HDDVAS-VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885 (1127)
Q Consensus 807 ~De~~~-VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~ 885 (1127)
+..+.. .|.+-.+.++.+. ++.|. ...-..+++.+.-++..+|-=.--.|-|+++.
T Consensus 42 ~s~~~~~kk~alKkvIa~mt----~G~Dv---S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~---------------- 98 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANMT----MGRDV---SYLFVDVVKLAPSTDLELKKLVYLYVLSTARL---------------- 98 (746)
T ss_pred HCCCHHHHHHHHHHHHHHHH----CCCCc---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----------------
Confidence 333444 4455555666664 36664 23334445566666777775555555555321
Q ss_pred cccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHH
Q 035871 886 NANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVC 964 (1127)
Q Consensus 886 ~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc 964 (1127)
.+++....+....+-++|.+ .||+.|.|.||+| ..+...|-++..+.+++.+.++.||=+|+
T Consensus 99 --~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I---------------r~~~i~e~l~~~lkk~L~D~~pYVRKtAa 161 (746)
T PTZ00429 99 --QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI---------------RVSSVLEYTLEPLRRAVADPDPYVRKTAA 161 (746)
T ss_pred --ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---------------CcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 12333334555555566654 8999999999999 34457888999999999999999999999
Q ss_pred HHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 965 RALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 965 ~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
.|+.++++...-.....+|.+ .|..+| +++|--|..||..+|..+
T Consensus 162 lai~Kly~~~pelv~~~~~~~----~L~~LL-~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 162 MGLGKLFHDDMQLFYQQDFKK----DLVELL-NDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHHHHhhCcccccccchHH----HHHHHh-cCCCccHHHHHHHHHHHH
Confidence 999999974321112334554 455555 579999999999999744
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.09 E-value=0.24 Score=61.45 Aligned_cols=246 Identities=13% Similarity=0.183 Sum_probs=147.9
Q ss_pred HHHHhhHHHHHccCChhHHHHHH----HHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC--H---hHHHHHHHHHhh
Q 035871 753 EMIEKHMPLILQHISSMVRTAAV----TCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV--A---SVRSAACRAIGV 823 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc----~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~--~---~VRaAA~RALGv 823 (1127)
++++..+ .-+.|+.+.-|.... +.++++|...| ....-+..+..++.+.-++.. . .+=.+-+.+||.
T Consensus 716 ~~v~R~v-~~lkde~e~yrkm~~etv~ri~~~lg~~di---derleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~ 791 (1172)
T KOG0213|consen 716 PIVSRVV-LDLKDEPEQYRKMVAETVSRIVGRLGAADI---DERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG 791 (1172)
T ss_pred HHHHHHh-hhhccccHHHHHHHHHHHHHHHhccccccc---cHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 4555544 346777765555554 44555665442 334455666666555544422 2 222334444543
Q ss_pred hhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhc
Q 035871 824 ISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLT 903 (1127)
Q Consensus 824 lv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~ 903 (1127)
=+ --|+.-.+..++..|+++..+||+.||=-.|.|.-.+..+.++ .++..+--.+....
T Consensus 792 r~--------kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee-------------~~m~~lGvvLyEyl 850 (1172)
T KOG0213|consen 792 RV--------KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE-------------KLMGHLGVVLYEYL 850 (1172)
T ss_pred cc--------ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH-------------HHHHHhhHHHHHhc
Confidence 21 1234566778888999999999999998888887766655321 12222211111112
Q ss_pred -cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCC
Q 035871 904 -KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMD 982 (1127)
Q Consensus 904 -~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~ 982 (1127)
++.+.|-.+..-|+-.|...+...-... .+..+++.|.--|++..-||+=|-.--+|.+..+-.-..+-..
T Consensus 851 geeypEvLgsILgAikaI~nvigm~km~p--------Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE 922 (1172)
T KOG0213|consen 851 GEEYPEVLGSILGAIKAIVNVIGMTKMTP--------PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE 922 (1172)
T ss_pred CcccHHHHHHHHHHHHHHHHhccccccCC--------ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH
Confidence 2333565544444443332221111101 1456777888888889999999988888999988666777788
Q ss_pred chhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 983 WAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 983 wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
|...-|.- +.+|+. -|-.+|.+|...+|-+.. ..|.+ +|...|+.-|+.
T Consensus 923 WMRIcfeL-lelLka-hkK~iRRaa~nTfG~Iak--aIGPq--dVLatLlnnLkv 971 (1172)
T KOG0213|consen 923 WMRICFEL-LELLKA-HKKEIRRAAVNTFGYIAK--AIGPQ--DVLATLLNNLKV 971 (1172)
T ss_pred HHHHHHHH-HHHHHH-HHHHHHHHHHhhhhHHHH--hcCHH--HHHHHHHhcchH
Confidence 99988875 455544 456799999999985542 56655 777777666653
No 49
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.95 E-value=0.03 Score=60.36 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-ccc---ccccchHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFP---QVSQSAEI 836 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p---~L~~d~~f 836 (1127)
..+.++...+|.+|..||-.|-..+ +... ..+.. .+..++++.++.||..++..|..++ .++ .--+...+
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~----~~~~-~~~~~-~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESC----SYSP-KILLE-ILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-----H---HHHHH-HHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHC----CcHH-HHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 4456777899999999999875432 2001 11122 3456789999999999999998875 444 11122334
Q ss_pred HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh
Q 035871 837 IDKFIHAVEINTHDPLVSVRITASWALANICDSIRH 872 (1127)
Q Consensus 837 v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~ 872 (1127)
+...++.+...+.|++..||..|--++..+-.....
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 577888888999999999999999888888765443
No 50
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.26 Score=60.40 Aligned_cols=283 Identities=17% Similarity=0.217 Sum_probs=159.6
Q ss_pred chHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q 035871 617 AICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISG 696 (1127)
Q Consensus 617 ~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g 696 (1127)
....-++|+|+.++..-|..+..+...+.-++.+.|-+... .+..++++.|......
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~--------------------evr~a~~~~l~~~~sv--- 325 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP--------------------EVRKAGIETLLKFGSV--- 325 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH--------------------HHHHHHHHHHHHHHHh---
Confidence 45567899999999999998888887776666666644332 2334444444432111
Q ss_pred ccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH---ccCChhHHHH
Q 035871 697 FKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL---QHISSMVRTA 773 (1127)
Q Consensus 697 ~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l---~d~~~~VRaa 773 (1127)
.|+ .-|..++|.++ .|+...+
T Consensus 326 ------------idN-----------------------------------------~dI~~~ip~Lld~l~dp~~~~--- 349 (569)
T KOG1242|consen 326 ------------IDN-----------------------------------------PDIQKIIPTLLDALADPSCYT--- 349 (569)
T ss_pred ------------hcc-----------------------------------------HHHHHHHHHHHHHhcCcccch---
Confidence 111 11233444444 4554222
Q ss_pred HHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc-ccccchHHHHHHHHHHHHhcCCCC
Q 035871 774 AVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP-QVSQSAEIIDKFIHAVEINTHDPL 852 (1127)
Q Consensus 774 Ac~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p-~L~~d~~fv~~ai~aLl~~l~D~~ 852 (1127)
-.|+-.+|...|...=..--.-++-.++-..+++.+...+-.++-..|+++..- .=..=..|+...++.+-.++.|+.
T Consensus 350 -~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~ 428 (569)
T KOG1242|consen 350 -PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAV 428 (569)
T ss_pred -HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCC
Confidence 234445555555544322222233346667789999999999999999996311 111124456666677778899999
Q ss_pred cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCC
Q 035871 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 853 ~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
+.||.-|+.|||-+-..+.... ++ ..+..+.+... ..-.++-|.-++-.|+.+++-+..+
T Consensus 429 PEvR~vaarAL~~l~e~~g~~~----f~---------d~~p~l~e~~~--~~k~~~~~~g~aq~l~evl~~~~v~----- 488 (569)
T KOG1242|consen 429 PEVRAVAARALGALLERLGEVS----FD---------DLIPELSETLT--SEKSLVDRSGAAQDLSEVLAGLGVE----- 488 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhhc----cc---------ccccHHHHhhc--cchhhhhhHHHhhhHHHHHhcccch-----
Confidence 9999999999998887765422 11 12222333211 1122356666677777775333322
Q ss_pred CCCCChhHHHHHHHHHHHhhccCCcc--chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 035871 933 ASLGDSRWLERIVQALVSCVTTGNVK--VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAA 1009 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~~~n~K--VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~ 1009 (1127)
..++++..++........+ +|=+-.+=++-+- ..+.....+....+++..++.+. +.+-++|..|-.
T Consensus 489 -------~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp--~~~~~~~~~yi~~i~~~~~k~~a-d~de~~~~~~~~ 557 (569)
T KOG1242|consen 489 -------KVEDILPEILANASSVLIDERIRDGVIWLFYLLP--YIFGFQFQPYIHEILDEFLKGLA-DNDEKGRDTALE 557 (569)
T ss_pred -------HHHHHHHHHHHHHhhccchhhhccCeeehhhccc--hhhhHHhHHHHHHHHHHHHHHhh-hcCCccccchhh
Confidence 2456666666555433322 3332222221111 11112234677888888888886 566677766543
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.89 E-value=0.0012 Score=63.42 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 940 WLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 940 ~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
..+.+++-+++|++|.+.+|||.||.||.|+.+.-.-. -.+.-..+|+.|++++. |.+-.||..|.
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~-D~d~~Vr~~a~ 89 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSA-DPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHc-CCchhHHHHHH
Confidence 57889999999999999999999999999997541100 01234789999999995 57778998774
No 52
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.011 Score=72.67 Aligned_cols=184 Identities=20% Similarity=0.225 Sum_probs=124.7
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhc--cchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAG--ITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ 829 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~--Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~ 829 (1127)
.+-.+..+-.++.|.+|.+|..+.=.++. .|... ..+|..|+.-+..|.|-+||-||+-|||-+.
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl---- 583 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVL---- 583 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeE----
Confidence 34456677778889999999998655543 33211 3355667767789999999999999999763
Q ss_pred cccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC-ch
Q 035871 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG-DK 908 (1127)
Q Consensus 830 L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DK 908 (1127)
..|+ +.+...+....+.-|+-||.-||-|||=-|.--.. .+ -..|+|.++ +|. |-
T Consensus 584 -~~dp---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----------------~e-Ai~lLepl~---~D~~~f 639 (929)
T KOG2062|consen 584 -FRDP---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----------------KE-AINLLEPLT---SDPVDF 639 (929)
T ss_pred -ecCh---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----------------HH-HHHHHhhhh---cChHHH
Confidence 3555 33334444445778899999999999988853110 01 223444433 444 46
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhh---hccccccccCC
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNL---FLNETINLEDM 981 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl---~~n~~i~~~~~ 981 (1127)
||..|.-|++.|+ ++..+-..|. ...+.+.|.+.+.+ .+.=++.-||.|=|-+ ++|-+|.+..+
T Consensus 640 VRQgAlIa~amIm--~Q~t~~~~pk-------v~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~ 708 (929)
T KOG2062|consen 640 VRQGALIALAMIM--IQQTEQLCPK-------VNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSM 708 (929)
T ss_pred HHHHHHHHHHHHH--HhcccccCch-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEecc
Confidence 9999999999996 3332222221 34566777777765 4577899999998876 78988887654
No 53
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0071 Score=72.32 Aligned_cols=190 Identities=20% Similarity=0.248 Sum_probs=127.1
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP 828 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p 828 (1127)
.+-.++.++.+..++.|.++.+|..+.=+++. .|.--. ...++..|+.-+..|.|.+||-||+=|||-++|
T Consensus 511 ygrqe~add~I~ell~d~ds~lRy~G~fs~al----Ay~GTg---n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~-- 581 (926)
T COG5116 511 YGRQEMADDYINELLYDKDSILRYNGVFSLAL----AYVGTG---NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC-- 581 (926)
T ss_pred hhhHHHHHHHHHHHhcCchHHhhhccHHHHHH----HHhcCC---cchhHhhhheeecccCchHHHHHHHHheeeeEe--
Confidence 45568888899999999999999988766554 111111 133566677677899999999999999997753
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch
Q 035871 829 QVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK 908 (1127)
Q Consensus 829 ~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK 908 (1127)
+|. ...+..+...-+.-|.-||.-.|.|||=.|.--.. ..--++|..|.+ +.+|-
T Consensus 582 ---~D~---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------------~~a~diL~~L~~------D~~df 636 (926)
T COG5116 582 ---DDR---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------------KVATDILEALMY------DTNDF 636 (926)
T ss_pred ---cCc---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------------HHHHHHHHHHhh------CcHHH
Confidence 444 22333343445677889999999999988853111 122234555532 45568
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhh---hccccccccCC
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNL---FLNETINLEDM 981 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl---~~n~~i~~~~~ 981 (1127)
||..|+-|+|.|+--..++- +| -..+++..+.+.+.+ .+.-++.-||.|=|-+ ++|-+|.+..+
T Consensus 637 VRQ~AmIa~~mIl~Q~n~~L--np-------~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~l~na 705 (926)
T COG5116 637 VRQSAMIAVGMILMQCNPEL--NP-------NVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNA 705 (926)
T ss_pred HHHHHHHHHHHHHhhcCccc--Ch-------hHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEEEecc
Confidence 99999999999973332221 12 145666667666654 3456778899887765 68877776544
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.76 E-value=0.11 Score=63.29 Aligned_cols=235 Identities=17% Similarity=0.209 Sum_probs=128.7
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc---chH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ---SAE 835 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~---d~~ 835 (1127)
|-..+..++..+|.-+.+++.+|.+..-+.+..-....+++ .++..++++|..||..|+..|+.++..+.-.+ ...
T Consensus 165 L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~-~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 165 LKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLD-LLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHH-HHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 33455666788999999999988654422222211112444 34577788999999999999999976333211 122
Q ss_pred HHHHHHHHHHHhcCCC-CcchhchHH-HHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhh
Q 035871 836 IIDKFIHAVEINTHDP-LVSVRITAS-WALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSN 912 (1127)
Q Consensus 836 fv~~ai~aLl~~l~D~-~~~VRikAA-WALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsn 912 (1127)
.+...++-+....+|| ...+.+... -..||+... .... .- ..-+..+..+ .......| ..+..
T Consensus 244 i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~--~~~~-------v~-~~~p~~~~~l----~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV--SPQE-------VL-ELYPAFLERL----FSMLESQDPTIREV 309 (503)
T ss_pred HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc--ChHH-------HH-HHHHHHHHHH----HHHhCCCChhHHHH
Confidence 2333344444445566 333343333 345555532 0000 00 0112333333 33345555 69999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC-C-CchhHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED-M-DWAPSVFSI 990 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~-~-~wa~~v~~~ 990 (1127)
|+.++|.|+.-..-...- ....+.-.+.++...-.....+...+|-.+-+||++++....-...+ . .-....|..
T Consensus 310 A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred HHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 999999997333221110 00111224556666666667788889999999999998765431000 0 112233332
Q ss_pred ---------HHHHHhcCCChHHHHHHHHHhc
Q 035871 991 ---------LLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 991 ---------Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+..++ ..+=..+|+.|=.-|.
T Consensus 387 ~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~ 416 (503)
T PF10508_consen 387 LSGSPLSNLLMSLL-KQPFPELRCAAYRLLQ 416 (503)
T ss_pred hcCCchHHHHHHHh-cCCchHHHHHHHHHHH
Confidence 33333 4455678877766664
No 55
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.60 E-value=0.6 Score=57.66 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=102.2
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cc
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CF 827 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~ 827 (1127)
++-....+.++.....+.+..+++|||-|+-+..-.+..-=..-++..++..++ .++.|.+..|..++.-||-++| -|
T Consensus 372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv-qll~dp~~~i~~~~lgai~NlVmef 450 (678)
T KOG1293|consen 372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV-QLLMDPEIMIMGITLGAICNLVMEF 450 (678)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH-HHhhCcchhHHHHHHHHHHHHHhhc
Confidence 344444455666666678899999999999885433321111123445555443 7789999999999999999988 56
Q ss_pred cccccchHHH-HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc-ccCCCCCCcccccHHHHHHHHHHHHhhccC
Q 035871 828 PQVSQSAEII-DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCID-DFAFKPSIDSNANSHLMASLTESALNLTKD 905 (1127)
Q Consensus 828 p~L~~d~~fv-~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~-~~~~~~~~~~~is~~lL~~L~e~aL~a~~D 905 (1127)
..+++ .|+ ...|+.++..+.|+..++|.++-|+|-++.= +.+ ...+.. ...+..+.|.- ..+|
T Consensus 451 s~~ks--kfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f----~~de~~k~~~--~~ki~a~~i~~-------l~nd 515 (678)
T KOG1293|consen 451 SNLKS--KFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF----NCDEEEKFQL--LAKIPANLILD-------LIND 515 (678)
T ss_pred ccHHH--HHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh----cchHHHHHHH--HHHhhHHHHHH-------HHhC
Confidence 66654 232 4567889999999999999999999988752 111 000000 01233333322 3578
Q ss_pred Cc-hhhhhHHHHHhhhh
Q 035871 906 GD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 906 ~D-KVRsnAvRALGnLl 921 (1127)
.| .|...+.--|.|+.
T Consensus 516 ~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 516 PDWAVQEQCFQLLRNLT 532 (678)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 88 79988887777774
No 56
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.014 Score=66.56 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=110.0
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCC--cchhchHHHHHHhhhhhhhhcccccC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPL--VSVRITASWALANICDSIRHCIDDFA 878 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~--~~VRikAAWALGNL~d~L~~~~~~~~ 878 (1127)
++..++.+.+..||--|+||||++.--..-+.|-..--.+.+.++..+.... .+.--+|.|.|+|+|.. .+.
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG--knP---- 234 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG--KNP---- 234 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC--CCC----
Confidence 4447778899999999999999996322222221111123355555444333 35556899999999964 111
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHH-----HHHHHHhh
Q 035871 879 FKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERI-----VQALVSCV 952 (1127)
Q Consensus 879 ~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~-----i~aLlk~l 952 (1127)
.| ++ +.+..-+...-++..-.| .|-.-|+-|+.+|. .|.-+-++.+ ...|+..|
T Consensus 235 -~P--~w----~~isqalpiL~KLiys~D~evlvDA~WAiSYls-------------Dg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 235 -PP--DW----SNISQALPILAKLIYSRDPEVLVDACWAISYLS-------------DGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred -CC--ch----HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc-------------cCcHHHHHHHHhcCCcHHHHHHh
Confidence 11 11 112222222223333333 68889999999984 1211112222 23488888
Q ss_pred ccCCccchhhHHHHHHhhhcccccccc---CCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 953 TTGNVKVQWNVCRALSNLFLNETINLE---DMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 953 ~~~n~KVRWNAc~ALGnl~~n~~i~~~---~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
.+.+.||+-=|-.+.||+..-.+.... .++ +.+++..+|.+-+ -.+|-.|++.++.+.
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G----~L~a~~~lLs~~k-e~irKEaCWTiSNIT 355 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDDQTQVIINCG----ALKAFRSLLSSPK-ENIRKEACWTISNIT 355 (526)
T ss_pred cCccccccCHHHHhhcCeeecCccceehheecc----cHHHHHHHhcChh-hhhhhhhheeecccc
Confidence 999999999999999999755443321 111 3356666675544 479999999998664
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.57 E-value=0.026 Score=60.86 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=113.3
Q ss_pred ccCCCHhHHHHHHHHHhhhhcccc-cccchHH---HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 806 LHDDVASVRSAACRAIGVISCFPQ-VSQSAEI---IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGvlv~~p~-L~~d~~f---v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..+.|+..|-.|...|-.++.... ...-..| +..++..+...+.|....|-..|.-.++.+...+....+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~------ 89 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE------ 89 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH------
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH------
Confidence 477899999999999987775551 1111223 233446777889999999999999999999988765431
Q ss_pred CCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHH-HHHHHHhhccCCccc
Q 035871 882 SIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERI-VQALVSCVTTGNVKV 959 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~-i~aLlk~l~~~n~KV 959 (1127)
+ .+..++...++.+.|+. -||..|..+|-.+.+.... ..++ +..+....+++|++|
T Consensus 90 -------~-~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--------------~~~~~~~~l~~~~~~Kn~~v 147 (228)
T PF12348_consen 90 -------P-YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY--------------SPKILLEILSQGLKSKNPQV 147 (228)
T ss_dssp -------H-HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHH
T ss_pred -------H-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--------------HHHHHHHHHHHHHhCCCHHH
Confidence 1 24444555555667765 4999999999999743331 1234 566667778999999
Q ss_pred hhhHHHHHHhhhcccc---ccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 960 QWNVCRALSNLFLNET---INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~---i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
|--++..|..++..-. -.+....+.+.+.+.+...+ .|.|-.||-.|-.++.
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLW 202 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHH
Confidence 9999999999886533 11222234577899999999 5699999999999997
No 58
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.50 E-value=0.052 Score=67.28 Aligned_cols=232 Identities=17% Similarity=0.164 Sum_probs=127.3
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHH-HHHHHHhhhhcccccccchHHHHHHHHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRS-AACRAIGVISCFPQVSQSAEIIDKFIHAVE 845 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRa-AA~RALGvlv~~p~L~~d~~fv~~ai~aLl 845 (1127)
....|..-.|||+..|...-. .++.. +| .+++-+...+ .....|+..+-.|+. ..++.+.
T Consensus 377 ~~~~r~~~lDal~~aGT~~av-------~~i~~-~I---~~~~~~~~ea~~~l~~l~~~~~~Pt~--------e~l~~l~ 437 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAV-------KFIKD-LI---KSKKLTDDEAAQLLASLPFHVRRPTE--------ELLKELF 437 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHH-------HHHHH-HH---HTT-S-HHHHHHHHHHHHHT-----H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHH-------HHHHH-HH---HcCCCCHHHHHHHHHHHHhhcCCCCH--------HHHHHHH
Confidence 467899999999999876511 12222 22 2233333332 223333333333332 3444444
Q ss_pred HhcC----CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 846 INTH----DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 846 ~~l~----D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
..+. ..+..+|..|.-++|.+-...........+.+.....+....+..+.+.+-.+...+| ..+--+.+||||+
T Consensus 438 ~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~ 517 (618)
T PF01347_consen 438 ELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL 517 (618)
T ss_dssp HHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc
Confidence 4333 2456788889999999988655442000000000011222223333332223334444 6788899999999
Q ss_pred hhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC---CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 921 SRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG---NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 921 l~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~---n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
+ ...+++.|...+.+. +.-+|.-|.+||.++-.. +...+.+.|+....+
T Consensus 518 g-------------------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~---------~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 518 G-------------------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH---------CPEKVREILLPIFMN 569 (618)
T ss_dssp T--------------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----------HHHHHHHHHHHHH-
T ss_pred C-------------------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc---------CcHHHHHHHHHHhcC
Confidence 5 234677888888665 688999999999877322 346789999999987
Q ss_pred -CCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 035871 998 -SSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFK 1068 (1127)
Q Consensus 998 -~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~ 1068 (1127)
..+..|||.|...|..- +-...+|..+...|.. +. -.|+++|....|+
T Consensus 570 ~~e~~EvRiaA~~~lm~~-------~P~~~~l~~i~~~l~~---E~-------------~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 570 TTEDPEVRIAAYLILMRC-------NPSPSVLQRIAQSLWN---EP-------------SNQVASFVYSHLK 618 (618)
T ss_dssp TTS-HHHHHHHHHHHHHT----------HHHHHHHHHHHTT----S--------------HHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHhc-------CCCHHHHHHHHHHHhh---Cc-------------hHHHHHHHHHhcC
Confidence 55688999999999621 1234678777777754 11 3567777766554
No 59
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.38 Score=61.96 Aligned_cols=311 Identities=23% Similarity=0.249 Sum_probs=185.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccC-CCHhHHHHHHHHHhhhh----cc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHD-DVASVRSAACRAIGVIS----CF 827 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~D-e~~~VRaAA~RALGvlv----~~ 827 (1127)
.+++ +|-..+.|.+..||.+||.-+|.|++ +||.+.-+.+|..++ ....- +++.+---||-|||.+. +.
T Consensus 341 ~vie-~Lls~l~d~dt~VrWSaAKg~grvt~----rlp~~Lad~vi~svi-d~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 341 FVIE-HLLSALSDTDTVVRWSAAKGLGRVTS----RLPPELADQVIGSVI-DLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHH-HHHHhccCCcchhhHHHHHHHHHHHc----cCcHHHHHHHHHHHH-HhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 3444 55578889999999999999999864 688877787777655 33332 56778889999999996 33
Q ss_pred cccccchHHHHHHHHHHHHhcC--------CCCcchhchHH---HHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHH
Q 035871 828 PQVSQSAEIIDKFIHAVEINTH--------DPLVSVRITAS---WALANICDSIRHCIDDFAFKPSIDSNANSHLMASLT 896 (1127)
Q Consensus 828 p~L~~d~~fv~~ai~aLl~~l~--------D~~~~VRikAA---WALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~ 896 (1127)
|++ +++.++.|++++. -.-..||-.|+ ||++.--+. ..+.+ .+.+|.
T Consensus 415 ps~------l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~---------------~~l~p-~l~~L~ 472 (1133)
T KOG1943|consen 415 PSL------LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP---------------SDLKP-VLQSLA 472 (1133)
T ss_pred hHH------HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh---------------hhhhH-HHHHHH
Confidence 333 4677888887653 33357887665 565532211 12223 233332
Q ss_pred HH-HHhhccCCc-hhhhhHHHHHh-hhhhccccCCCC------CC--C----C---------CCChhHHHHHHHHHHHh-
Q 035871 897 ES-ALNLTKDGD-KIKSNAVRGLG-NLSRFVKYTSSS------HP--A----S---------LGDSRWLERIVQALVSC- 951 (1127)
Q Consensus 897 e~-aL~a~~D~D-KVRsnAvRALG-nLl~~l~~~~~~------~~--~----~---------~g~~~~~E~~i~aLlk~- 951 (1127)
.+ ...|.-|.+ .+|..|.=|+= +++|.-.+.+-. +. + . .+.+.+.+.+++-|+..
T Consensus 473 s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~K 552 (1133)
T KOG1943|consen 473 SALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKK 552 (1133)
T ss_pred HHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcc
Confidence 22 233457999 79998888874 334444432210 10 0 0 14555678888887755
Q ss_pred hccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC-C-cccccCCc---hHH
Q 035871 952 VTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP-S-SVSDYGKS---FSD 1026 (1127)
Q Consensus 952 l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p-~-~R~~yG~~---~~~ 1026 (1127)
+..=+.|+||-|++||.++-.-+. ...+..+++.|+.-. +.++-.-|+.+..|.|.. + -|..+|-. ..+
T Consensus 553 v~HWd~~irelaa~aL~~Ls~~~p-----k~~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~ 626 (1133)
T KOG1943|consen 553 VCHWDVKIRELAAYALHKLSLTEP-----KYLADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDEN 626 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHhhH-----Hhhcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 888899999999999999532210 112345778887777 567778899888888722 2 22222111 122
Q ss_pred HHHHHHHHHHHhccCCCCCCccchhhH--HHHHH-------------H---HHHH-HHHHHHHhhcccccccccccccCC
Q 035871 1027 VVQGLEHILENLGADHLSAPSSFKYRV--ALQKQ-------------K---SSFL-EEWFKVLCSSLGESTTHLENENNS 1087 (1127)
Q Consensus 1027 V~~~L~~aLe~~~s~~~~df~Eykyrd--~L~~Q-------------~---~~~l-~~~l~~~~~~~~~~~~~~~~~~~~ 1087 (1127)
-+..+.+.+ .+-+.-|-||+ ++..| . ..|+ |.|...+..+..-
T Consensus 627 ~i~~l~~ii-------~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~----------- 688 (1133)
T KOG1943|consen 627 RIAGLLSII-------PPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL----------- 688 (1133)
T ss_pred Hhhhhhhhc-------cHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-----------
Confidence 222221111 12234444555 45554 1 2333 3476666665511
Q ss_pred CCchhHHHHHHHHHHHHHHHhccChhHHH
Q 035871 1088 VGNQKKEMISKAIRSLIEVYEGRKQFAVA 1116 (1127)
Q Consensus 1088 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1116 (1127)
-++=++.+-+||..+-..|--.|....+
T Consensus 689 -~n~i~~~av~av~~l~s~y~~~d~~~~~ 716 (1133)
T KOG1943|consen 689 -PNQIRDAAVSAVSDLVSTYVKADEGEEA 716 (1133)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 1244556666888888887766665444
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.40 E-value=0.078 Score=66.84 Aligned_cols=180 Identities=17% Similarity=0.187 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 792 ~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
+....+++++. .-+.|+|+.+|..|.|+||.+ .+..+++.+++.|...++|++.-||-+||.|++++=+.=
T Consensus 88 ~~~lLavNti~-kDl~d~N~~iR~~AlR~ls~l-------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld- 158 (757)
T COG5096 88 ELALLAVNTIQ-KDLQDPNEEIRGFALRTLSLL-------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD- 158 (757)
T ss_pred HHHHHHHHHHH-hhccCCCHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-
Confidence 44455666543 557899999999999999988 567788999999999999999999999999999987530
Q ss_pred hcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHH
Q 035871 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVS 950 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk 950 (1127)
.+ .....-+.-+... +..|.| .|.+||+.+|-.+-.- . ...+..+.+. .+.
T Consensus 159 ~~------------l~~~~g~~~~l~~---l~~D~dP~Vi~nAl~sl~~i~~e----~--------a~~~~~~~~~-~i~ 210 (757)
T COG5096 159 KD------------LYHELGLIDILKE---LVADSDPIVIANALASLAEIDPE----L--------AHGYSLEVIL-RIP 210 (757)
T ss_pred Hh------------hhhcccHHHHHHH---HhhCCCchHHHHHHHHHHHhchh----h--------hhhHHHHHHH-Hhh
Confidence 00 0111101111111 234555 8999999999888311 0 0112222221 112
Q ss_pred hhc--cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 951 CVT--TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 951 ~l~--~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+. ..+.-++|+=.--++.+.... ...+-....|...+..-..+.|--|=..|..-+.
T Consensus 211 ~l~~~~~~~~~~~~~~~~le~L~~~~----~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~ 270 (757)
T COG5096 211 QLDLLSLSVSTEWLLLIILEVLTERV----PTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVIL 270 (757)
T ss_pred hccchhhhhhHHHHHHHHHHHHHccC----CCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHH
Confidence 211 222224666665555554321 1222256677777777767777766666665543
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.30 E-value=1.7 Score=58.07 Aligned_cols=141 Identities=25% Similarity=0.306 Sum_probs=94.8
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcch-hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLK-ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~-~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
+...+-.+.+.+|+-|..||++|-.-.=.-|.+ +-|..| .+-+.|....||-||..-+|.+|+ .+.+.+
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V-----h~R~~DssasVREAaldLvGrfvl-----~~~e~~ 890 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV-----HGRLNDSSASVREAALDLVGRFVL-----SIPELI 890 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH-----HHhhccchhHHHHHHHHHHhhhhh-----ccHHHH
Confidence 334555556899999999999973322112322 334444 355789999999999999999984 233345
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRsnAvRA 916 (1127)
....+.|.....|+...||-++---|-.||++- | .++. +.-+|-.+++-..|.+. |+-=+...
T Consensus 891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~----------p----df~~--i~~~cakmlrRv~DEEg~I~kLv~et 954 (1692)
T KOG1020|consen 891 FQYYDQIIERILDTGVSVRKRVIKILRDICEET----------P----DFSK--IVDMCAKMLRRVNDEEGNIKKLVRET 954 (1692)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC----------C----Chhh--HHHHHHHHHHHhccchhHHHHHHHHH
Confidence 566677777788999999999999999999751 1 1221 22233334455677776 88777777
Q ss_pred Hhhhhhcccc
Q 035871 917 LGNLSRFVKY 926 (1127)
Q Consensus 917 LGnLl~~l~~ 926 (1127)
+-++ +|.+.
T Consensus 955 f~kl-WF~p~ 963 (1692)
T KOG1020|consen 955 FLKL-WFTPV 963 (1692)
T ss_pred HHHH-hccCC
Confidence 7666 44444
No 62
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.044 Score=69.01 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhccCC-chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH
Q 035871 890 HLMASLTESALNLTKDG-DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968 (1127)
Q Consensus 890 ~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG 968 (1127)
+.....+....+-.+|. +.+|+.|.|.||.| +...+.+-+++.+.+|++++++.||-||+.|++
T Consensus 88 ~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l---------------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~ 152 (757)
T COG5096 88 ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL---------------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVA 152 (757)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 33444455555555554 48999999999998 456788999999999999999999999999999
Q ss_pred hhhc-cccccccCCCchhHH-HHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 969 NLFL-NETINLEDMDWAPSV-FSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 969 nl~~-n~~i~~~~~~wa~~v-~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
++++ ++... +.. ..-+++.+..+.+-+|--+|-.+|..+
T Consensus 153 kly~ld~~l~-------~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 153 KLYRLDKDLY-------HELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHhcCHhhh-------hcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 9994 33222 223 334566666889999999999999754
No 63
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.14 E-value=0.15 Score=58.62 Aligned_cols=197 Identities=18% Similarity=0.173 Sum_probs=125.8
Q ss_pred HHhhHHHHHccCChhHHHHHHHHHhccchh-HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc-ccc
Q 035871 755 IEKHMPLILQHISSMVRTAAVTCFAGITSS-VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ-VSQ 832 (1127)
Q Consensus 755 ie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~-~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~-L~~ 832 (1127)
+...+ ..+.+.....|.+|...+-++-.. +....=.+++..++..+ +..++-..+.-+..|++++|.+++--- -.+
T Consensus 45 L~~~I-d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~-~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAI-DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDAL-LKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 33444 345777789999999888875422 21112224456666644 466676666778899999999975311 123
Q ss_pred chHHHHHHHHHHHHhcCCCCc--chhchHHHHHHhhhhhhhhcccccCCCCCCccccc--HHHHHHHHHHH-Hh------
Q 035871 833 SAEIIDKFIHAVEINTHDPLV--SVRITASWALANICDSIRHCIDDFAFKPSIDSNAN--SHLMASLTESA-LN------ 901 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~--~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is--~~lL~~L~e~a-L~------ 901 (1127)
...+++.+.+.|...+.|... .+|..++.|||=++=-..... +.+. .+.+..+.... ++
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~----------~~~~~~~~~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE----------EETEELMESLESIFLLSILKSDGNAP 192 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh----------hHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 455677778888887777664 567788889997764322111 0111 01122111100 11
Q ss_pred --hccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 902 --LTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 902 --a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
...|...|...|..|-|-|+..++...+ ....+..++.|...|...+..||-.|..||+-++
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~--------~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDSKL--------EDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1123346999999999999966665332 1346889999999999999999999999998776
No 64
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.23 Score=62.64 Aligned_cols=217 Identities=15% Similarity=0.222 Sum_probs=145.6
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKF 840 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~a 840 (1127)
.++|+.+.+|..|..-++.+-... ..=+....+.++. +.+..++|+|+.|=-.|++.+.-++ +|| ++.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~-i~ld~LkdedsyvyLnaI~gv~~Lcevy~---------e~i 803 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLA-IALDTLKDEDSYVYLNAIRGVVSLCEVYP---------EDI 803 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHH-HHHHHhcccCceeeHHHHHHHHHHHHhcc---------hhh
Confidence 467888899999999998853311 1122333455665 4568889999999999999877664 222 334
Q ss_pred HHHHHH---hcCCCC-cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhhhHHH
Q 035871 841 IHAVEI---NTHDPL-VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVR 915 (1127)
Q Consensus 841 i~aLl~---~l~D~~-~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRsnAvR 915 (1127)
.+.+.+ +..+.. ..-|.+-..|++|+..++.. +.-.....|+...++-..|+|. -|.++.-
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge--------------l~~~y~~~Li~tfl~gvrepd~~~RaSS~a 869 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE--------------LVFKYKAVLINTFLSGVREPDHEFRASSLA 869 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHhcCCchHHHHHhHHH
Confidence 444433 233333 67888999999999887642 2223455678888888888884 8999999
Q ss_pred HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-ccCCccchhhHHHHHHhhhccccccccC--CCchhHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLED--MDWAPSVFSILL 992 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~n~~i~~~~--~~wa~~v~~~Ll 992 (1127)
++|++++.+.+.- ++|.-..+..++... .+|.+-||..|.+-+.-+++....-+.+ ....-..+..+.
T Consensus 870 ~lg~Lcq~~a~~v---------sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 870 NLGQLCQLLAFQV---------SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHHHHHhhhh---------hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 9999998888742 235666666666666 4688999999999998887642111000 011224456667
Q ss_pred HHHhcCCChHHHHHHHHHhc
Q 035871 993 LLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 993 ~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
..++++..--+|.+|..+|-
T Consensus 941 ~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred HHHhcCchhHHHHHHHHHHH
Confidence 77777777777777766653
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=1.8 Score=54.70 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 035871 490 HIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLT 569 (1127)
Q Consensus 490 ~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~ 569 (1127)
.|++.|.--.-..|++ .++-+..-+.=|+.-+|.-. |+++..++...++.+.++|. +++.+++..+.
T Consensus 138 EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~------P~l~e~f~~~~~~lL~ek~h------GVL~~~l~l~~ 204 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKV------PDLVEHFVIAFRKLLCEKHH------GVLIAGLHLIT 204 (866)
T ss_pred HHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcC------chHHHHhhHHHHHHHhhcCC------ceeeeHHHHHH
Confidence 3445555555566677 66667777777777777665 58999999999998887663 57888888888
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHh------hhhcCCC-CchHhHHHHHHHHHHhhChhh
Q 035871 570 AALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQ------CSERLAS-PAICFESLQALRAVSHNYPNI 636 (1127)
Q Consensus 570 avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~------~~~~~~~-~~vRlEAlQvL~ala~~yp~l 636 (1127)
.+....|..-+-..-+.. .-...|.++.. |.-++.+ +=+.++.|+.|+-+-++.+..
T Consensus 205 e~c~~~~~~l~~fr~l~~----------~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da 268 (866)
T KOG1062|consen 205 ELCKISPDALSYFRDLVP----------SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA 268 (866)
T ss_pred HHHhcCHHHHHHHHHHHH----------HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH
Confidence 877765532221110000 00012222221 1112222 347889999999888887653
No 66
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.02 E-value=0.016 Score=55.66 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=71.1
Q ss_pred chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCC
Q 035871 854 SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 854 ~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
|-|.-+-++|+.++-++... ..+.+..+++-.++...|.| +||..|+.||.|+.+..+.+.+
T Consensus 1 n~R~ggli~Laa~ai~l~~~--------------~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l--- 63 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKD--------------ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL--- 63 (97)
T ss_pred CchhHHHHHHHHHHHHchHh--------------HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35777888999888776543 23446677777777789999 7999999999999977775432
Q ss_pred CCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 933 ASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
.....++++|.+.+.|.+..||- +|.-|-+++
T Consensus 64 ------~~f~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 64 ------PYFNEIFDALCKLSADPDENVRS-AAELLDRLL 95 (97)
T ss_pred ------HHHHHHHHHHHHHHcCCchhHHH-HHHHHHHHh
Confidence 23688999999999999999985 445555544
No 67
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.074 Score=66.74 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=124.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhhc--ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVISC--FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~--~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..++|+.+.+|+.|.+.|.-++- +++ ...+-+.+....+..++|.++-|=-+|.-++.-+|+..
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~---~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy----------- 799 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKA---TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY----------- 799 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchh---hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-----------
Confidence 34699999999999999998863 333 23455888999999999999999999999999999852
Q ss_pred CCcccccHHHHHHHHHHHHhhccCC--c---h---hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 035871 882 SIDSNANSHLMASLTESALNLTKDG--D---K---IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT 953 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~--D---K---VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~ 953 (1127)
+...+..+.|.=.+..+-+ | | |=.+-++|+|.|. ....+..++..++.++
T Consensus 800 ------~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~----------------~~y~~~Li~tfl~gvr 857 (982)
T KOG4653|consen 800 ------PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELV----------------FKYKAVLINTFLSGVR 857 (982)
T ss_pred ------chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHH----------------HHHHHHHHHHHHHhcC
Confidence 1234555555222222222 1 1 2224445555442 1245667777778888
Q ss_pred cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 954 TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 954 ~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+.+-..|-.+|.+||++++-.++..++ |-..++.-++.+.+.+..+-||..|+.-+.
T Consensus 858 epd~~~RaSS~a~lg~Lcq~~a~~vsd--~~~ev~~~Il~l~~~d~s~~vRRaAv~li~ 914 (982)
T KOG4653|consen 858 EPDHEFRASSLANLGQLCQLLAFQVSD--FFHEVLQLILSLETTDGSVLVRRAAVHLLA 914 (982)
T ss_pred CchHHHHHhHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHccCCchhhHHHHHHHHH
Confidence 766666888999999999776665544 999999999999999999999999998886
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.00 E-value=0.13 Score=54.31 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=66.8
Q ss_pred CHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc
Q 035871 810 VASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN 888 (1127)
Q Consensus 810 ~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is 888 (1127)
+|.||.-|+.++|.++ .||.+ ++..++.+...++|+++.||..|.-.|..+-.. .+- .+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~i----------k~k 61 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMI----------KVK 61 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cce----------eeh
Confidence 6889999999999986 55544 678889999999999999999999888887542 110 222
Q ss_pred HHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhh
Q 035871 889 SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSR 922 (1127)
Q Consensus 889 ~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~ 922 (1127)
++++..++.+ ..++++.||..|...+..++.
T Consensus 62 ~~l~~~~l~~---l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 62 GQLFSRILKL---LVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred hhhhHHHHHH---HcCCCHHHHHHHHHHHHHHHH
Confidence 3333444332 134555899999999999963
No 69
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.91 E-value=0.56 Score=57.95 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCC-CHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHH
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD-VASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI 846 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De-~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~ 846 (1127)
...|..-.|||+..|...-. .++.. .| .+++ .+...+.+.-++...+..|+- ..++.+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~-------~~i~~-~i---~~~~~~~~ea~~~~~~~~~~~~~Pt~--------~~l~~l~~ 400 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPAL-------KFIKQ-WI---KNKKITPLEAAQLLAVLPHTARYPTE--------EILKALFE 400 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHH-------HHHHH-HH---HcCCCCHHHHHHHHHHHHHhhhcCCH--------HHHHHHHH
Confidence 56888999999999876511 11221 11 1222 223344444444444434433 45555555
Q ss_pred hcCC----CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 847 NTHD----PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 847 ~l~D----~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
.+++ ++..+|..|.-++|++......+...-+ ..+-.+++..+.+.+-.+.+++| ..+--+.+||||++
T Consensus 401 l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 401 LAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP------DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC------hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 5444 3557888999999999876543321100 01223344444443333333333 45778999999995
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhc-c--CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc-
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVT-T--GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD- 997 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~-~--~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~- 997 (1127)
...++..|...+. + -+..+|--|.+||.++-.. .-..+.+.|+.+..+
T Consensus 475 -------------------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~---------~p~~v~~~l~~i~~n~ 526 (574)
T smart00638 475 -------------------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR---------DPRKVQEVLLPIYLNR 526 (574)
T ss_pred -------------------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh---------CchHHHHHHHHHHcCC
Confidence 1345566666665 2 3467999999999976422 125688888888876
Q ss_pred CCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 998 SSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
..+..|||.|..+|... +-...++..+...+..
T Consensus 527 ~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 527 AEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNK 559 (574)
T ss_pred CCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhh
Confidence 67889999999999721 1122466666666654
No 70
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.91 E-value=0.73 Score=53.11 Aligned_cols=111 Identities=24% Similarity=0.234 Sum_probs=69.9
Q ss_pred hhHHHHHccCC--hhHHHHHHHHHhccchhHHhhc-chhHHH---HHHHHHHhh--h---------ccCCCHhHHHHHHH
Q 035871 757 KHMPLILQHIS--SMVRTAAVTCFAGITSSVFFSL-LKETQE---FIISSLIDS--A---------LHDDVASVRSAACR 819 (1127)
Q Consensus 757 ~~Lp~~l~d~~--~~VRaaAc~cLa~Igs~~f~~L-p~~~q~---~~i~~Lll~--~---------~~De~~~VRaAA~R 819 (1127)
.+|-+.+.|.. +.+|.++++|||-+. |..= ..+... -++..+... . ...+++.|.+||..
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~---fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICT---FVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHH---HhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 45666777764 578999999999852 2111 111112 122211110 0 11234689999999
Q ss_pred HHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 820 AIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 820 ALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
+-|-+. ..|. ..=..+++..++.+...|+.++.+||+-|.-+|+=|-+...
T Consensus 209 aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 209 AWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999875 2222 00123457788888889999999999999999998876554
No 71
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.3 Score=59.77 Aligned_cols=251 Identities=16% Similarity=0.146 Sum_probs=161.1
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKF 840 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~a 840 (1127)
.+.|....||.+|.+|.-.| ...++......++..++.+. .+..+-=+.+++..||.++ +.|..- +.+..+.
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai----~~~~~~~aVK~llpsll~~l-~~~kWrtK~aslellg~m~~~ap~qL--s~~lp~i 296 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAI----MRCLSAYAVKLLLPSLLGSL-LEAKWRTKMASLELLGAMADCAPKQL--SLCLPDL 296 (569)
T ss_pred HhhccchhhhHHHHHHHHHH----HHhcCcchhhHhhhhhHHHH-HHHhhhhHHHHHHHHHHHHHhchHHH--HHHHhHh
Confidence 34566789999998887764 33445444444455565444 4447778889999999886 434332 2346788
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhh------------hcccccCCC--CC--------CcccccHHHHHHHHHH
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIR------------HCIDDFAFK--PS--------IDSNANSHLMASLTES 898 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~------------~~~~~~~~~--~~--------~~~~is~~lL~~L~e~ 898 (1127)
++.+.+.|.|+.+.||-.+--+|=++|+.+. ....++.-. ++ +...+.+..|..|+..
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpi 376 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPI 376 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHH
Confidence 8999999999999999999999999998522 111111000 00 0001222334444444
Q ss_pred HHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHH----HhhccCCccchhhHHHHHHhhhcc
Q 035871 899 ALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALV----SCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 899 aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLl----k~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
.-+...+.+ ..+.-++-..||+..+..+ +.++...++.|+ +.+.+..+.||-=|+.|||.+...
T Consensus 377 L~R~l~eRst~~kr~t~~IidNm~~LveD-----------p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 377 LKRGLAERSTSIKRKTAIIIDNMCKLVED-----------PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHhhcC-----------HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 444455655 4778899999999866632 234445555554 444566899999999999998643
Q ss_pred ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC-chHHHHHHHHHHHHH
Q 035871 974 ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK-SFSDVVQGLEHILEN 1037 (1127)
Q Consensus 974 ~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~-~~~~V~~~L~~aLe~ 1037 (1127)
. + +.--+.+.+.|...+++++--+=|.-+|..|+-. ...+|- ++.++...++....+
T Consensus 446 ~----g-~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~ev--l~~~~v~~~~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 446 L----G-EVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEV--LAGLGVEKVEDILPEILANASS 503 (569)
T ss_pred H----H-hhcccccccHHHHhhccchhhhhhHHHhhhHHHH--HhcccchHHHHHHHHHHHHHhh
Confidence 2 1 1111456778889999999999999999999721 123443 355666666555543
No 72
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=10 Score=49.29 Aligned_cols=177 Identities=14% Similarity=0.195 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHhccchhHHhhcch-hHHH-HHHHHHHhhhccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHHHHH
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLK-ETQE-FIISSLIDSALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~-~~q~-~~i~~Lll~~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~ai~a 843 (1127)
+.-...|...+|++-+--...=|. +.-+ ++++ .++-...+..=..||.||+.+|.++ .|+ |..-...+.+.
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~-hVfP~f~s~~g~Lrarac~vl~~~~~~df~----d~~~l~~ale~ 506 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN-HVFPEFQSPYGYLRARACWVLSQFSSIDFK----DPNNLSEALEL 506 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH-HhhHhhcCchhHHHHHHHHHHHHHHhccCC----ChHHHHHHHHH
Confidence 444556666666654221111121 2223 4444 5556778888889999999999985 322 23233456666
Q ss_pred HHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc--CCchhhhhHHH-HHhh
Q 035871 844 VEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK--DGDKIKSNAVR-GLGN 919 (1127)
Q Consensus 844 Ll~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~--D~DKVRsnAvR-ALGn 919 (1127)
..+.+. |....||+.||-||--+-...... ++.+++ .+.-+++..|+.++ ++|.+ +|... -.+.
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~----------~e~~~~-hvp~~mq~lL~L~ne~End~L-t~vme~iV~~ 574 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQA----------DEKVSA-HVPPIMQELLKLSNEVENDDL-TNVMEKIVCK 574 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhh----------hhhHhh-hhhHHHHHHHHHHHhcchhHH-HHHHHHHHHH
Confidence 666666 999999999999998766543211 112322 24445555555555 33332 22222 2233
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc---CCccchhhHHHHHHhh
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT---GNVKVQWNVCRALSNL 970 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~---~n~KVRWNAc~ALGnl 970 (1127)
+..-+.+ =..++.....++..+++.+ .+.-+.=-|--|.|-+
T Consensus 575 fseElsP---------fA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 575 FSEELSP---------FAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred HHHhhch---------hHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 3221111 0123445555566666653 3344555566666665
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.69 E-value=2.4 Score=51.85 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=46.8
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
-.|.-||+-||-||..++-.+.+. -.-+.+..+|-.|++|.+-.||=.|+.+|-+|=..+
T Consensus 498 LEN~ivRsaAv~aLskf~ln~~d~-----------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 498 LENNIVRSAAVQALSKFALNISDV-----------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HhhhHHHHHHHHHHHHhccCcccc-----------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 466789999999999886333221 224667788889999999999999999999986443
No 74
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=9.9 Score=49.81 Aligned_cols=428 Identities=15% Similarity=0.113 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 035871 489 GHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCL 568 (1127)
Q Consensus 489 g~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL 568 (1127)
-.++.++|.-|+.+|.+ ++..+.=.+-|.++-+.+ |+|++|...|+..+..+.. ..+....-.++.-.|
T Consensus 336 ~eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~-----rlp~~Lad~vi~svid~~~-----p~e~~~aWHgacLaL 404 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTS-----RLPPELADQVIGSVIDLFN-----PAEDDSAWHGACLAL 404 (1133)
T ss_pred HHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHc-----cCcHHHHHHHHHHHHHhcC-----cCCchhHHHHHHHHH
Confidence 56788999999999766 888888899999988876 5558999999988766332 222222445666666
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhh----hcCCCCchHhHHHHHHHHHHhhC-hhhhhhhHHH
Q 035871 569 TAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCS----ERLASPAICFESLQALRAVSHNY-PNIMSSYWQQ 643 (1127)
Q Consensus 569 ~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~----~~~~~~~vRlEAlQvL~ala~~y-p~l~~~~~~~ 643 (1127)
+++.-..-..+.-..-+.. ++..=+.|. ....+..||=-|--++-|++|.| |.-+.++...
T Consensus 405 AELA~rGlLlps~l~dVvp--------------lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~ 470 (1133)
T KOG1943|consen 405 AELALRGLLLPSLLEDVVP--------------LILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS 470 (1133)
T ss_pred HHHHhcCCcchHHHHHHHH--------------HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH
Confidence 6655443333311100000 111112222 12344679999999999999888 6666665554
Q ss_pred HHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHH-HHhhhcccCccccccccccCCCCcchhhhhhc
Q 035871 644 VSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDES-LRAISGFKGTEDLLDDKLLDNPFTSDCIRIKN 722 (1127)
Q Consensus 644 l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~-lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~ 722 (1127)
+. ..+|..+.. | .++ .|+-+|...+.|. +|.-+--.|-+.++
T Consensus 471 L~---s~LL~~AlF-D----------rev-----ncRRAAsAAlqE~VGR~~n~p~Gi~Lis------------------ 513 (1133)
T KOG1943|consen 471 LA---SALLIVALF-D----------REV-----NCRRAASAALQENVGRQGNFPHGISLIS------------------ 513 (1133)
T ss_pred HH---HHHHHHHhc-C----------chh-----hHhHHHHHHHHHHhccCCCCCCchhhhh------------------
Confidence 43 333332222 2 112 4665555555554 23111111211111
Q ss_pred cCCCCcccccchhhhhhhhhh-hhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHH
Q 035871 723 ISSAPLYEQESSEDIKESAKA-FQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSL 801 (1127)
Q Consensus 723 ~~~~p~~~~~~~~~~~~~~~~-~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~L 801 (1127)
..--|--...+||..-++. +..-..|-..+++..+..-+.|-+..+|..|..||.++.-..-+.+ ...+...+
T Consensus 514 --~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~----a~~~L~~l 587 (1133)
T KOG1943|consen 514 --TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL----ADYVLPPL 587 (1133)
T ss_pred --hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh----cccchhhh
Confidence 0000111123444332221 1111133345566555555677889999999999998533221111 11111112
Q ss_pred HhhhccCCCHhHHHHHHHHHhhhh-----cc---c---------------cc--------------------------cc
Q 035871 802 IDSALHDDVASVRSAACRAIGVIS-----CF---P---------------QV--------------------------SQ 832 (1127)
Q Consensus 802 ll~~~~De~~~VRaAA~RALGvlv-----~~---p---------------~L--------------------------~~ 832 (1127)
| ..+--.++..|--..-|.|.++ +. + .+ .+
T Consensus 588 l-d~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~ 666 (1133)
T KOG1943|consen 588 L-DSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK 666 (1133)
T ss_pred h-hhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Confidence 1 2112233334433333333321 11 0 00 01
Q ss_pred ch---HHH-HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-Cc
Q 035871 833 SA---EII-DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GD 907 (1127)
Q Consensus 833 d~---~fv-~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~D 907 (1127)
+. .|+ +..-.-+..++.+++ .+|..|-||+|.++.......+ .-...++.+.+.. ++++ +.
T Consensus 667 ~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~----------~~~~~li~~~ls~---~~~~~~~ 732 (1133)
T KOG1943|consen 667 DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADE----------GEEAPLITRYLSR---LTKCSEE 732 (1133)
T ss_pred chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCc----------hhhhHHHHHHHHH---hcCchHH
Confidence 11 111 111112222345677 8999999999999998875432 1111234444433 3566 34
Q ss_pred hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC-----CccchhhHHHHHHhhhccccccccCCC
Q 035871 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG-----NVKVQWNVCRALSNLFLNETINLEDMD 982 (1127)
Q Consensus 908 KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~-----n~KVRWNAc~ALGnl~~n~~i~~~~~~ 982 (1127)
++|.--.-|+|.+-+++-.- .+.|.+ ++++-+. .+.-|-+.--||..+..+-.. .....
T Consensus 733 ~~r~g~~lal~~lp~~~i~~-----------~~q~~l----c~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~-~~~~~ 796 (1133)
T KOG1943|consen 733 RIRRGLILALGVLPSELIHR-----------HLQEKL----CKLVLELLPSDAWAEARQQNVKALAHVCKTVTS-LLFSE 796 (1133)
T ss_pred HHHHHHHHHHccCcHHhhch-----------HHHHHH----HHHHhccCcccccHHHHHHHHHHHHHHHHHHHH-hhccc
Confidence 89988888888774332221 133433 4554433 334444555555555544321 11233
Q ss_pred chhHHHHHHHHHHhcCCC-------hHHHHHHHHHhcCCC
Q 035871 983 WAPSVFSILLLLLRDSSN-------FKIRIQAAAALAVPS 1015 (1127)
Q Consensus 983 wa~~v~~~Ll~ll~~~~N-------FKVRi~AA~AL~~p~ 1015 (1127)
--.++++.|++++.|..- -=||..|-.||....
T Consensus 797 ~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~ 836 (1133)
T KOG1943|consen 797 SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL 836 (1133)
T ss_pred cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh
Confidence 457899999999954221 138888888886443
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=6.9 Score=49.33 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=91.9
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 035871 437 TCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLF 516 (1127)
Q Consensus 437 t~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlL 516 (1127)
.-=|-||+|.|-.||.++++.|=..-...|++.|- -+...|..-++.=+|..++
T Consensus 187 ~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP--------------------------~ffkllttSsNNWmLIKii 240 (877)
T KOG1059|consen 187 VEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP--------------------------LFYKLLVTSSNNWVLIKLL 240 (877)
T ss_pred HHhccCCCchHHHHHHHHHHHHHhhCCcccccccH--------------------------HHHHHHhccCCCeehHHHH
Confidence 33578999999999999999987664444555441 1233445556667899999
Q ss_pred HHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCC
Q 035871 517 KILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEV 596 (1127)
Q Consensus 517 KcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~ 596 (1127)
|.+++|..--| ||-.-|++++.+-+.. +..-.--..|.-.|++.. +++|-++.
T Consensus 241 KLF~aLtplEP--RLgKKLieplt~li~s------------T~AmSLlYECvNTVVa~s-------------~s~g~~d~ 293 (877)
T KOG1059|consen 241 KLFAALTPLEP--RLGKKLIEPITELMES------------TVAMSLLYECVNTVVAVS-------------MSSGMSDH 293 (877)
T ss_pred HHHhhccccCc--hhhhhhhhHHHHHHHh------------hHHHHHHHHHHHHheeeh-------------hccCCCCc
Confidence 99999865444 7766666666654322 101001125555555531 11222211
Q ss_pred CCcchhHHHH---HhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHH
Q 035871 597 DKRSGVLFTL---LQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKIL 652 (1127)
Q Consensus 597 ~~~s~~L~~L---l~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L 652 (1127)
+-.+..+ ++-.-.+....++-=.+-+++.+++-||..++.|-+ ++.+||
T Consensus 294 ---~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL 345 (877)
T KOG1059|consen 294 ---SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCL 345 (877)
T ss_pred ---HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHh
Confidence 1111111 111122334566666777899999999999998875 455565
No 76
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.45 E-value=12 Score=48.20 Aligned_cols=264 Identities=20% Similarity=0.191 Sum_probs=150.2
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
.|.+..||.+.+.-...+.+ .+|.++...-...+..+..+|+.+.||-.-..-+-.+..-++..+-....+..+++
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p----~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~ 483 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSP----ILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPA 483 (759)
T ss_pred hcccchHHHHHhccccccCc----cCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhh
Confidence 47778899887655444321 24444433222235567789999999999998776655434433333344666788
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhc
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~ 923 (1127)
+....+|.+..||...-|.+--++..+... +.++-+..++. .-..|+|.+=.-+|.-|+..+
T Consensus 484 i~el~~d~~wRvr~ail~~ip~la~q~~~~-------------~~~~~~~~l~~-----~~l~d~v~~Ir~~aa~~l~~l 545 (759)
T KOG0211|consen 484 IVELAEDLLWRVRLAILEYIPQLALQLGVE-------------FFDEKLAELLR-----TWLPDHVYSIREAAARNLPAL 545 (759)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhhhH-------------HhhHHHHHHHH-----hhhhhhHHHHHHHHHHHhHHH
Confidence 888889999999999999998888765532 11222333332 234554444334444444333
Q ss_pred cccCCCCCCCCCCChhH-HHHHHHHHHHhhccCCccchhh---HHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 924 VKYTSSSHPASLGDSRW-LERIVQALVSCVTTGNVKVQWN---VCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 924 l~~~~~~~~~~~g~~~~-~E~~i~aLlk~l~~~n~KVRWN---Ac~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
+... | ..| .++.+..++....++|.++|-- +++-|..++.++.+ .....+.+..++ .|.
T Consensus 546 ~~~~--------G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~-------~~~Llp~~~~l~-~D~ 608 (759)
T KOG0211|consen 546 VETF--------G-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT-------CEDLLPVFLDLV-KDP 608 (759)
T ss_pred HHHh--------C-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH-------HHHHhHHHHHhc-cCC
Confidence 2221 2 223 4666777777776677888864 44444555554422 345566666666 457
Q ss_pred ChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHH------------------HHH
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ------------------KSS 1061 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q------------------~~~ 1061 (1127)
+--||+++|..|-....-.+. +.+=.-+..+++.+.++ .--+-||+..+-.| ..+
T Consensus 609 vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d---~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~~~~~a 681 (759)
T KOG0211|consen 609 VANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSD---QELDVRYRAILAFGSIELSRLESSLDVRDKKQLIA 681 (759)
T ss_pred chhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccC---cccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777888888888632221111 11222233555555432 12344555555544 467
Q ss_pred HHHHHHHHHhhc
Q 035871 1062 FLEEWFKVLCSS 1073 (1127)
Q Consensus 1062 ~l~~~l~~~~~~ 1073 (1127)
|+|+|=+++-..
T Consensus 682 ~~~~~~~~~~~~ 693 (759)
T KOG0211|consen 682 FLEQDSHVLEVE 693 (759)
T ss_pred HHhhhhHHHHHH
Confidence 777665554433
No 77
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.06 E-value=4.3 Score=50.19 Aligned_cols=262 Identities=14% Similarity=0.128 Sum_probs=138.7
Q ss_pred hHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh---c
Q 035871 751 WSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAIGVIS---C 826 (1127)
Q Consensus 751 W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv---~ 826 (1127)
-..+++.+| ..|.+..|.||.-|++-.|.+..-. ..-.+.+ -..|=. ++..-+..+.|-|-..-..|+--+. -
T Consensus 602 l~~ivStiL-~~L~~k~p~vR~~aadl~~sl~~vl-k~c~e~~~l~klg~-iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 602 LSMIVSTIL-KLLRSKPPDVRIRAADLMGSLAKVL-KACGETKELAKLGN-ILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred hHHHHHHHH-HHhcCCCccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhH-HHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 345555555 5788999999999988877754311 0000000 011111 1222334455555544444443332 1
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC
Q 035871 827 FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906 (1127)
Q Consensus 827 ~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~ 906 (1127)
|-++.- + +...++.|..-++++...|-.+..=-+|-||+.- . +-++..-+-+++-..+...+..
T Consensus 679 ~~~mqp-P--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~---------p----eyi~~rEWMRIcfeLvd~Lks~ 742 (975)
T COG5181 679 FRSMQP-P--ISGILPSLTPILRNKHQKVVANTIALVGTICMNS---------P----EYIGVREWMRICFELVDSLKSW 742 (975)
T ss_pred ccccCC-c--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcC---------c----ccCCHHHHHHHHHHHHHHHHHh
Confidence 111110 1 2345555666678888888888888888888631 1 1344433444544444455544
Q ss_pred c-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchh
Q 035871 907 D-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985 (1127)
Q Consensus 907 D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~ 985 (1127)
. .+|.||+..+|.|.+.+-+ +.++..|+++|+...-.-|--...|+|-+..- +++ =
T Consensus 743 nKeiRR~A~~tfG~Is~aiGP---------------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~------cgp--f 799 (975)
T COG5181 743 NKEIRRNATETFGCISRAIGP---------------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY------CGP--F 799 (975)
T ss_pred hHHHHHhhhhhhhhHHhhcCH---------------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh------cCc--h
Confidence 4 5999999999999755543 34677888887654444444344444443311 111 1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHH
Q 035871 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEE 1065 (1127)
Q Consensus 986 ~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~ 1065 (1127)
+|.|+|..=-. .+|--|.-.--.|++- -.+-.|+..-+.+-++.-.||++- .| ||....|.+.-+-.
T Consensus 800 sVlP~lm~dY~-TPe~nVQnGvLkam~f--mFeyig~~s~dYvy~itPlleDAl----tD------rD~vhRqta~nvI~ 866 (975)
T COG5181 800 SVLPTLMSDYE-TPEANVQNGVLKAMCF--MFEYIGQASLDYVYSITPLLEDAL----TD------RDPVHRQTAMNVIR 866 (975)
T ss_pred hhHHHHHhccc-CchhHHHHhHHHHHHH--HHHHHHHHHHHHHHHhhHHHHhhh----cc------cchHHHHHHHHHHH
Confidence 35666665553 3555666666666651 122344444455555555665531 21 45556666665533
Q ss_pred HH
Q 035871 1066 WF 1067 (1127)
Q Consensus 1066 ~l 1067 (1127)
+|
T Consensus 867 Hl 868 (975)
T COG5181 867 HL 868 (975)
T ss_pred HH
Confidence 33
No 78
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.96 E-value=0.018 Score=43.72 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
++.++..++|+++.||..|+++||+|++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 56788889999999999999999999864
No 79
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.82 E-value=0.86 Score=54.34 Aligned_cols=191 Identities=17% Similarity=0.200 Sum_probs=130.9
Q ss_pred HHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhccccc
Q 035871 800 SLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDF 877 (1127)
Q Consensus 800 ~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~ 877 (1127)
.++.-+.+.+++.+|.++++.++.++ .|+. ...++.+++.+.... .+....-|..+--.+.-++-+++.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~-- 266 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWPD----DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH-- 266 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC--
Confidence 34434455566999999999999987 3222 224566666666666 677778899999999999999887542
Q ss_pred CCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCC---CCCC--CChhHHHHHHHHHHHhh
Q 035871 878 AFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSH---PASL--GDSRWLERIVQALVSCV 952 (1127)
Q Consensus 878 ~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~---~~~~--g~~~~~E~~i~aLlk~l 952 (1127)
....+.+.+|++. ..| +++...|+|++|-|+.-.+. -..+ .... --++....+++.|++..
T Consensus 267 --------~~~~~~~~~L~~l----L~~-~~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklLykQR~F~~~~p~L~~~~ 332 (415)
T PF12460_consen 267 --------PLATELLDKLLEL----LSS-PELGQQAAKAFGILLSDSDD-VLNKENHANVKLLYKQRFFTQVLPKLLEGF 332 (415)
T ss_pred --------chHHHHHHHHHHH----hCC-hhhHHHHHHHHhhHhcCcHH-hcCccccchhhhHHhHHHHHHHHHHHHHHH
Confidence 2233455566552 344 88999999999999754221 1100 0000 01234566777788887
Q ss_pred ccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 953 TTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 953 ~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
++.+..+|.|--.||+.+++|-.... -.+..+.++|-|++.| +.+|-.||.++-..|.
T Consensus 333 ~~~~~~~k~~yL~ALs~ll~~vP~~v-l~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 333 KEADDEIKSNYLTALSHLLKNVPKSV-LLPELPTLLPLLLQSL-SLPDADVLLSSLETLK 390 (415)
T ss_pred hhcChhhHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 77665699999999999998743221 1235678999999999 7788889998888885
No 80
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.24 E-value=0.37 Score=51.56 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=99.9
Q ss_pred hHhHHHHHHHHHHhh-ChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccc-cchhHHHHHHHHHHHHHHhhh
Q 035871 618 ICFESLQALRAVSHN-YPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGF-IGEKVVTAAIKVLDESLRAIS 695 (1127)
Q Consensus 618 vRlEAlQvL~ala~~-yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l-~g~~~~l~A~klLdE~lra~~ 695 (1127)
+|..|+++|.+++++ -+..+..||..+ |-+....+ .....+....+-. ...+|+.+|+.+|..++....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~l-------lP~~~~~~--~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk 72 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPAL-------LPDSVLQG--RPATPSLLTCILKDPSPKVRAAAASALAALLEGSK 72 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHH-------CCCCCCcC--CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH
Confidence 799999999999998 888899999753 21110000 0000110000000 113788899999988865433
Q ss_pred cccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccC-ChhHHHHH
Q 035871 696 GFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHI-SSMVRTAA 774 (1127)
Q Consensus 696 g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~-~~~VRaaA 774 (1127)
.|...- ...+ ....+|-. ++. .++. +..-+-.-|-..++++ ++.+-...
T Consensus 73 ~~L~~A----------------e~~~--~~~~sFts-----lS~-----tLa~--~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 73 PFLAQA----------------EESK--GPSGSFTS-----LSS-----TLAS--MIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred HHHHHH----------------HhcC--CCCCCccc-----HHH-----HHHH--HHHHHHHHHHHHHhcccccHHHHHH
Confidence 222211 1000 00011111 111 1221 1111222344566766 57788899
Q ss_pred HHHHhc-cchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 775 VTCFAG-ITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 775 c~cLa~-Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
+.||+. +....|.+|+.+-...++.. +...+.+.|++||.++.-++|.++
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~-v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQ-VRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999998 46667999999887777774 457788899999999999999885
No 81
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=17 Score=48.25 Aligned_cols=229 Identities=17% Similarity=0.146 Sum_probs=137.1
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHH---HHhhhccCCCHhHHHHHHHHHhhh---hc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISS---LIDSALHDDVASVRSAACRAIGVI---SC 826 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~---Lll~~~~De~~~VRaAA~RALGvl---v~ 826 (1127)
+.|+..|-..++..+...|..++.||..| +..+|.+.-+++... +|+.. +|.|-.-|.-|...|=.+ ..
T Consensus 696 ~~I~n~L~ds~qs~~~~~~~~rl~~L~~L----~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~ 770 (1176)
T KOG1248|consen 696 DDIFNSLLDSFQSSSSPAQASRLKCLKRL----LKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQS 770 (1176)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHh
Confidence 33444555678888899999999999985 555564444433221 34454 898888888888877444 35
Q ss_pred ccccccch--HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHH-HHhhc
Q 035871 827 FPQVSQSA--EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTES-ALNLT 903 (1127)
Q Consensus 827 ~p~L~~d~--~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~-aL~a~ 903 (1127)
+...++|. .-++.++..|...+-.+...++..---|++-+--.-. ..++...+..+++- .+-.+
T Consensus 771 ~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~-------------~~ld~~~l~~li~~V~~~L~ 837 (1176)
T KOG1248|consen 771 SLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK-------------NILDDETLEKLISMVCLYLA 837 (1176)
T ss_pred hhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh-------------ccccHHHHHHHHHHHHHHHh
Confidence 55566554 2356677767666655555555433344443332211 13445556666653 33446
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
..+.+|+..|++.+--+..-++...+.. ..|.++..++....+...|+|--+=+=|-.+.+-=-+... .+.
T Consensus 838 s~sreI~kaAI~fikvlv~~~pe~~l~~--------~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL-e~~ 908 (1176)
T KOG1248|consen 838 SNSREIAKAAIGFIKVLVYKFPEECLSP--------HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL-ESF 908 (1176)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHhh--------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH-Hhh
Confidence 6777999999999988876666544321 2577888888877888888887666666555432100000 012
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 984 APSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
.+...-.+++-++--++.|-|-.|.
T Consensus 909 ~pee~~klL~nIRK~r~R~~rK~a~ 933 (1176)
T KOG1248|consen 909 LPEEDMKLLTNIRKRRRRKKRKKAM 933 (1176)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 2234445566665555555555544
No 82
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.90 E-value=0.16 Score=56.76 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=67.1
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
|...+.++++..|--+.-|||++.+.. . |..|.-.+. .-|+|.||-.|+.|||-+. +
T Consensus 192 l~~~l~~~SalfrhEvAfVfGQl~s~~--a---------i~~L~k~L~d~~E~pMVRhEaAeALGaIa------~----- 249 (289)
T KOG0567|consen 192 LIDGLADDSALFRHEVAFVFGQLQSPA--A---------IPSLIKVLLDETEHPMVRHEAAEALGAIA------D----- 249 (289)
T ss_pred HHHhcccchHHHHHHHHHHHhhccchh--h---------hHHHHHHHHhhhcchHHHHHHHHHHHhhc------C-----
Confidence 445677888999999999999998765 2 222332221 2389999999999999983 3
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALAN 865 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGN 865 (1127)
+++++.|.+-+.|+..-||..+..||.-
T Consensus 250 e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 250 EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6889999999999999999999988863
No 83
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.83 E-value=0.05 Score=43.60 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.+++.|+..+++++..||..|+|||+||++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467888889999999999999999999984
No 84
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.74 Score=57.58 Aligned_cols=226 Identities=19% Similarity=0.237 Sum_probs=137.5
Q ss_pred ccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcc
Q 035871 806 LHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~ 885 (1127)
+.+.|..||..-.|=|-.+ .+++.++.+++++...++.++.-||-+|..|++-|=-- -+. +-|
T Consensus 108 LQHPNEyiRG~TLRFLckL-------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~----~~~--L~p---- 170 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKL-------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN----FEH--LIP---- 170 (948)
T ss_pred ccCchHhhcchhhhhhhhc-------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh----hhh--hcC----
Confidence 4668888999998887766 67888999999999999999999999999999877532 000 000
Q ss_pred cccHHHHHHHHHHHHhhccCCchhhhhHH---------HHHhhhhhccccCC-CCCCC-----------CCCChhHHHHH
Q 035871 886 NANSHLMASLTESALNLTKDGDKIKSNAV---------RGLGNLSRFVKYTS-SSHPA-----------SLGDSRWLERI 944 (1127)
Q Consensus 886 ~is~~lL~~L~e~aL~a~~D~DKVRsnAv---------RALGnLl~~l~~~~-~~~~~-----------~~g~~~~~E~~ 944 (1127)
. -|+++...+. ++.+.-.+.||. |||-+++..+..=+ ++..+ ...++..-.+.
T Consensus 171 D-apeLi~~fL~-----~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~ 244 (948)
T KOG1058|consen 171 D-APELIESFLL-----TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY 244 (948)
T ss_pred C-hHHHHHHHHH-----hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH
Confidence 0 1233333322 233346888986 67777766554322 11110 00223334566
Q ss_pred HHHHHHhhccCCccchhhHHHHHHhhhcccccccc-------------CC--------------CchhHHHHHH----HH
Q 035871 945 VQALVSCVTTGNVKVQWNVCRALSNLFLNETINLE-------------DM--------------DWAPSVFSIL----LL 993 (1127)
Q Consensus 945 i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~-------------~~--------------~wa~~v~~~L----l~ 993 (1127)
|..+...|...+.-|++-|+-+|-++..+|+..-. +. +--..++..| +.
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLr 324 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLR 324 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77777788778889999999998888877654311 00 1111222222 22
Q ss_pred HHhcCCChHHHHHHHH-HhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHH
Q 035871 994 LLRDSSNFKIRIQAAA-ALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSF 1062 (1127)
Q Consensus 994 ll~~~~NFKVRi~AA~-AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~ 1062 (1127)
+| +.+++.||-.+-. ||.- .+..++.+++.=|-.-+.+ ..+.+.--.-+||.-|.+.++.+
T Consensus 325 vL-ss~dldvr~Ktldi~ldL-----vssrNvediv~~Lkke~~k--T~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 325 VL-SSPDLDVRSKTLDIALDL-----VSSRNVEDIVQFLKKEVMK--THNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred Hc-CcccccHHHHHHHHHHhh-----hhhccHHHHHHHHHHHHHh--ccccccccchHHHHHHHHHHHHH
Confidence 33 5666777766532 3331 1334577777766666655 23334445567888888884443
No 85
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.52 E-value=0.057 Score=41.00 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 944 IVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 944 ~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
+++.|++.++|.+.+||.+|+++||++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999874
No 86
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.31 Score=60.68 Aligned_cols=100 Identities=25% Similarity=0.225 Sum_probs=76.3
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
+.+|..+|+-...|.+-.||++|.-|||=|--..- +.|++. +--+.+.-||-||..|+-|||..+- +
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~-V~lLses~N~HVRyGaA~ALGIaCA----G 619 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPST-VSLLSESYNPHVRYGAAMALGIACA----G 619 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHH-HHHHhhhcChhhhhhHHHHHhhhhc----C
Confidence 46778889888899999999999999997643332 333332 2234577899999999999998842 2
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANIC 867 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~ 867 (1127)
... ..+++-|...+.|+..-||.-|.-|+|=|.
T Consensus 620 tG~---~eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 620 TGL---KEAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred CCc---HHHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 211 467777777889999999999999998775
No 87
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.41 E-value=1.3 Score=49.69 Aligned_cols=140 Identities=22% Similarity=0.221 Sum_probs=89.5
Q ss_pred HHHcc-CChhHHHHHHHHHhccchhHHhhcchhHHH-HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 761 LILQH-ISSMVRTAAVTCFAGITSSVFFSLLKETQE-FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 761 ~~l~d-~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
..|+. .+|.++..|+-++++.....|.+- --++ ..+. ++..++.+.++.||-.|..||.++..- .+...-++
T Consensus 19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~--~Ir~~Ggi~-lI~~lL~~p~~~vr~~AL~aL~Nls~~---~en~~~Ik 92 (254)
T PF04826_consen 19 CLLESTEDPFIQEKALIALGNSAAFPFNQD--IIRDLGGIS-LIGSLLNDPNPSVREKALNALNNLSVN---DENQEQIK 92 (254)
T ss_pred HHHhcCCChHHHHHHHHHHHhhccChhHHH--HHHHcCCHH-HHHHHcCCCChHHHHHHHHHHHhcCCC---hhhHHHHH
Confidence 56664 479999999999999765443221 1122 2333 677889999999999999999988421 12222345
Q ss_pred HHHHHHHHh-c-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHH
Q 035871 839 KFIHAVEIN-T-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRG 916 (1127)
Q Consensus 839 ~ai~aLl~~-l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRA 916 (1127)
..++.+++. . ...+..|+..+--+|.||+-. . ++ ...+ ...+..+++- ...++.++|.++.+.
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~--------~~-~~~l-~~~i~~ll~L---L~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--N--------DY-HHML-ANYIPDLLSL---LSSGSEKTKVQVLKV 157 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--c--------ch-hhhH-HhhHHHHHHH---HHcCChHHHHHHHHH
Confidence 566666653 2 345788999999999999732 0 00 0011 1122333321 135667999999999
Q ss_pred Hhhhh
Q 035871 917 LGNLS 921 (1127)
Q Consensus 917 LGnLl 921 (1127)
|-||.
T Consensus 158 L~nLS 162 (254)
T PF04826_consen 158 LVNLS 162 (254)
T ss_pred HHHhc
Confidence 99996
No 88
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=37 Score=43.63 Aligned_cols=206 Identities=20% Similarity=0.211 Sum_probs=114.3
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
-.+++.+|-.|++|||. | | ...+.+.|.-|..+|+..+ ..|+.-++.==..
T Consensus 304 I~~~~~LrvlainiLgk-----F--------------L-----~n~d~NirYvaLn~L~r~V-----~~d~~avqrHr~t 354 (866)
T KOG1062|consen 304 IRSNSGLRVLAINILGK-----F--------------L-----LNRDNNIRYVALNMLLRVV-----QQDPTAVQRHRST 354 (866)
T ss_pred ccCCchHHHHHHHHHHH-----H--------------h-----cCCccceeeeehhhHHhhh-----cCCcHHHHHHHHH
Confidence 45667888888888886 2 1 2345568888888888876 3565555555577
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhc
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~ 923 (1127)
|++.++|++..+|.+|-.-+=-|.++- ++ ..+...|++.+- +-.+.+|.+-+--+-.+..-
T Consensus 355 IleCL~DpD~SIkrralELs~~lvn~~---------------Nv-~~mv~eLl~fL~---~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 355 ILECLKDPDVSIKRRALELSYALVNES---------------NV-RVMVKELLEFLE---SSDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhccc---------------cH-HHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHh
Confidence 888889999999999975544444320 11 112334444322 12345676655555555432
Q ss_pred cccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH-HhcCCChH
Q 035871 924 VKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL-LRDSSNFK 1002 (1127)
Q Consensus 924 l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l-l~~~~NFK 1002 (1127)
..+ +..| .|+.+.+.++..---|+--+.+++=.+..|..-.+. ..-....|.++... +.+-.+-+
T Consensus 416 faP----------~k~W---~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~rLy~a~~~~~~~~is~e~ 481 (866)
T KOG1062|consen 416 FAP----------DKRW---HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLRLYLALSEDTLLDISQEP 481 (866)
T ss_pred cCC----------cchh---HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh-hHHHHHHHHHHhhhhhhhhhhhh
Confidence 222 2234 455666666554445666666776666655321111 11112233333221 11122333
Q ss_pred HHHHHHHHhcCCCcccccCCc--------------hHHHHHHHHHHHHH
Q 035871 1003 IRIQAAAALAVPSSVSDYGKS--------------FSDVVQGLEHILEN 1037 (1127)
Q Consensus 1003 VRi~AA~AL~~p~~R~~yG~~--------------~~~V~~~L~~aLe~ 1037 (1127)
.=--|++.+| .||.. =.+|+.-|++++++
T Consensus 482 l~qVa~W~IG------EYGdlll~~~~~~~p~~vtesdivd~l~~v~~~ 524 (866)
T KOG1062|consen 482 LLQVASWCIG------EYGDLLLDGANEEEPIKVTESDIVDKLEKVLMS 524 (866)
T ss_pred HHHHHHHHhh------hhhHHhhcCccccCCCcCCHHHHHHHHHHHHHh
Confidence 4556899999 57732 13466666666655
No 89
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.27 Score=59.57 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
.++...|+-...|.+-.||++|+-|||=+- + +.+..++.+ +.-+.+..|+-||+..+-|||..+. +.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc------~--~D~~~lv~t-velLs~shN~hVR~g~AvaLGiaca----g~ 617 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVC------C--DDRDLLVGT-VELLSESHNFHVRAGVAVALGIACA----GT 617 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeE------e--cCcchhhHH-HHHhhhccchhhhhhhHHHhhhhhc----CC
Confidence 455667887788999999999999999653 2 233444543 2334567899999999999999842 22
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.. ..+++-|...+.|++.-||..|.-|+|-|.-
T Consensus 618 G~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 618 GD---KVATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred cc---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 21 3566667677899999999999999998763
No 90
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.68 E-value=5.6 Score=48.94 Aligned_cols=67 Identities=27% Similarity=0.186 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc-cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 794 QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS-QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 794 q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~-~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
..++.+.+++ ||.-||+||.-||..+.+ . +|.-..+...+++-..++|.+..||-+|+++|-||-+.
T Consensus 489 vrhIyNR~iL-----EN~ivRsaAv~aLskf~l----n~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 489 VRHIYNRLIL-----ENNIVRSAAVQALSKFAL----NISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHH-----hhhHHHHHHHHHHHHhcc----CccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 4455554442 788999999999998854 2 23322344556666779999999999999999999864
No 91
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=48 Score=44.30 Aligned_cols=146 Identities=26% Similarity=0.346 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhh---hcCCChhHHHHHHHHHHHHhcCCchhhh
Q 035871 391 SKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCL---LFDPCLKARMASASTLAAMLDGPSTVFL 467 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~i---L~Dps~KvR~aA~~~LsaLL~gsk~~ll 467 (1127)
..|+..|+.||..|-+. .=+.-|. -+ .+.+-+..| ..++.||+|.+|+..+.++|.|| + |.
T Consensus 109 ~svlr~~iscL~~lLra---Qd~~aW~--~~---------~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p-~-~~ 172 (1176)
T KOG1248|consen 109 GSVLRLAISCLEDLLRA---QDASAWS--YS---------STKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGP-P-FA 172 (1176)
T ss_pred chHHHHHHHHHHHHHHH---cchhhhc--cc---------cHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCC-C-CC
Confidence 36999999999998875 2245677 11 122333334 44589999999999999999995 3 34
Q ss_pred hhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHH
Q 035871 468 QVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARI 547 (1127)
Q Consensus 468 q~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i 547 (1127)
-.|+++. +...|.....+ |..+-.+...|-.++.|..|=. +|+.+|.+++.++.+.|..+.
T Consensus 173 ~~~~HpA----------~~~vak~cl~~-------~e~~~~~a~~t~v~~~L~Ll~~--~~~~~p~~li~sl~e~lL~i~ 233 (1176)
T KOG1248|consen 173 PDAEHPA----------SLSVAKFCLAL-------IESKLGSAENTTVLRSLMLLRD--VLSTFPRPLIKSLCEVLLNIT 233 (1176)
T ss_pred ccccchH----------HHHHHHHHHHH-------HHhhhchHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHhhc
Confidence 4465442 11222221111 1222224455556665554422 344488888888888776644
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHhcCCC
Q 035871 548 EEGFPLKTDQTGLLVAAISCLTAALSTSPA 577 (1127)
Q Consensus 548 ~~~~~~~~d~~al~VaaL~cL~avls~~~~ 577 (1127)
... ++. ++-.+|.||..+|...|.
T Consensus 234 ~~s-----~v~-v~~~~~q~l~~lf~~~~~ 257 (1176)
T KOG1248|consen 234 TES-----PVL-VLLEVLQCLHSLFKKHPT 257 (1176)
T ss_pred ccc-----hHH-HHHHHHHHHHHHHhcCCC
Confidence 332 323 566899999999988874
No 92
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=9.6 Score=44.28 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=94.4
Q ss_pred hcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 035871 440 LFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKIL 519 (1127)
Q Consensus 440 L~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcL 519 (1127)
|.-|+..|+.-|+..+.-|++.+-.. .+.|- +--.=.+++..+++++-.|.+. +-...+|.+
T Consensus 91 LiaddasVKiLackqigcilEdcDtn--aVsei---------------llvvNaeilklildcIggedde-VAkAAiesi 152 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTN--AVSEI---------------LLVVNAEILKLILDCIGGEDDE-VAKAAIESI 152 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchh--hHHHH---------------HHHhhhhHHHHHHHHHcCCcHH-HHHHHHHHH
Confidence 44567788999999999999987642 22221 1111257888889999987765 666666665
Q ss_pred HHhHhcccC---CCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChh-HHHHHHHHhhhcCCCC
Q 035871 520 MPLISCTPY---SRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPV-QVKQMFLEEISAGSVE 595 (1127)
Q Consensus 520 a~LVq~TPY---~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~-eV~~~L~~e~ssg~~~ 595 (1127)
..+- -+|- .-.+.+++.. ++.+.... ..+| -.|+-.+..+-.++|.+|.+. +|
T Consensus 153 kria-lfpaaleaiFeSellDd----lhlrnlaa--kcnd--iaRvRVleLIieifSiSpesanec-------------- 209 (524)
T KOG4413|consen 153 KRIA-LFPAALEAIFESELLDD----LHLRNLAA--KCND--IARVRVLELIIEIFSISPESANEC-------------- 209 (524)
T ss_pred HHHH-hcHHHHHHhcccccCCh----HHHhHHHh--hhhh--HHHHHHHHHHHHHHhcCHHHHhHh--------------
Confidence 5432 2221 0011222221 11111110 0122 256667777777777665432 22
Q ss_pred CCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh-hChhhhhhhHHHHHHHHHHHH
Q 035871 596 VDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH-NYPNIMSSYWQQVSTIVFKIL 652 (1127)
Q Consensus 596 ~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~-~yp~l~~~~~~~l~~vl~~~L 652 (1127)
+.||++..|.....+....-||.-++.....++. +|..-.- -.+.+.+.+|+++
T Consensus 210 --kkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefl-aQeglIdlicnII 264 (524)
T KOG4413|consen 210 --KKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFL-AQEGLIDLICNII 264 (524)
T ss_pred --hhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhc-chhhHHHHHHHHh
Confidence 5678888777666555556777778877777663 3322111 1234566677774
No 93
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.52 E-value=3.9 Score=51.34 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHh
Q 035871 891 LMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN 969 (1127)
Q Consensus 891 lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGn 969 (1127)
++.-++.-.|+-.+.+| +||.+.+--|..+.. + ...-+..+..+...+|.+.+.|.-+.||.-|-.||..
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d----~-----~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr 152 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSD----E-----NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR 152 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc----c-----ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 45555666677788888 599988777766642 1 1112334677788888889999999999999999998
Q ss_pred hhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 970 LFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 970 l~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+-..+ -.--..|+++|..++++|++-.||..|-.-+.+-+
T Consensus 153 lQ~d~------~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn 192 (892)
T KOG2025|consen 153 LQGDP------KDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDN 192 (892)
T ss_pred HhcCC------CCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCc
Confidence 76321 11124599999999999999999999888887544
No 94
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.36 E-value=1.2 Score=50.74 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=74.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccc--
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQ-- 829 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~-- 829 (1127)
.+++.++....++.++.||..|..|||- |.-+.++.-..-+. ++......++..||..|++++..+. .|+-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl-----~~Lld~~~a~~~l~-l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGL-----CCLLDKELAKEHLP-LFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HHHhChHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 5566666567889999999999999996 33444433222233 2334445559999999999998876 3332
Q ss_pred cccc-----hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhh
Q 035871 830 VSQS-----AEIIDKFIHAVEINTHDPLVSVRITASWALANIC 867 (1127)
Q Consensus 830 L~~d-----~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~ 867 (1127)
+... ........+.+...+.+.+..||.-|+-.++.|-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1111 1123456666777788889899999999999876
No 95
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.04 E-value=3.3 Score=49.48 Aligned_cols=217 Identities=17% Similarity=0.166 Sum_probs=134.6
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
++++..+-..+...++..|.+++.+++.+-+. ++.+. -+.++..+......++++.-|..+.+.++-++.---+|
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNK----WPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 34555555555666799999999999987543 22222 22333323222224567778888888887776555567
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc--------HHHHHHHHHHHHhhc
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN--------SHLMASLTESALNLT 903 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is--------~~lL~~L~e~aL~a~ 903 (1127)
.++. ....++.++..+.| ..+...||-+++=+....- ++...+ ..-.+. ...+.+|++..-
T Consensus 265 ~~~~-~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~----~~l~~~-~~a~vklLykQR~F~~~~p~L~~~~~--- 333 (415)
T PF12460_consen 265 GHPL-ATELLDKLLELLSS--PELGQQAAKAFGILLSDSD----DVLNKE-NHANVKLLYKQRFFTQVLPKLLEGFK--- 333 (415)
T ss_pred CCch-HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH----HhcCcc-ccchhhhHHhHHHHHHHHHHHHHHHh---
Confidence 7653 34667778788888 6678889999987765411 110000 000111 123445554321
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
.-++.+|.|-..||.++++.++..-+. ...+++++-|++++.-.|..|+-++-..|-.+..+..-.. .+-
T Consensus 334 ~~~~~~k~~yL~ALs~ll~~vP~~vl~--------~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i--~~h 403 (415)
T PF12460_consen 334 EADDEIKSNYLTALSHLLKNVPKSVLL--------PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI--SEH 403 (415)
T ss_pred hcChhhHHHHHHHHHHHHhhCCHHHHH--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH--HHH
Confidence 122239999999999999777653321 1267899999999998999999999999988876641111 123
Q ss_pred hhHHHHHHHHH
Q 035871 984 APSVFSILLLL 994 (1127)
Q Consensus 984 a~~v~~~Ll~l 994 (1127)
.+.+++.|+++
T Consensus 404 l~sLI~~LL~l 414 (415)
T PF12460_consen 404 LSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHhc
Confidence 45666666653
No 96
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.85 E-value=11 Score=47.55 Aligned_cols=237 Identities=20% Similarity=0.188 Sum_probs=144.6
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.++.++-|.||.-|.-.+=. +|...|+-.|... ..|. .-++|+||.|.+||+-.+-.+. +.++.=.-..
T Consensus 151 tLL~sskpYvRKkAIl~lyk----vFLkYPeAlr~~F-prL~-EkLeDpDp~V~SAAV~VICELA-----rKnPknyL~L 219 (877)
T KOG1059|consen 151 TLLNSSKPYVRKKAILLLYK----VFLKYPEALRPCF-PRLV-EKLEDPDPSVVSAAVSVICELA-----RKNPQNYLQL 219 (877)
T ss_pred HHHhcCchHHHHHHHHHHHH----HHHhhhHhHhhhH-HHHH-HhccCCCchHHHHHHHHHHHHH-----hhCCcccccc
Confidence 46788889999999988876 7999998777643 4455 4469999999999987776664 1121111123
Q ss_pred HHHHHHhcCCCC-cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhh-------hh
Q 035871 841 IHAVEINTHDPL-VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIK-------SN 912 (1127)
Q Consensus 841 i~aLl~~l~D~~-~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVR-------sn 912 (1127)
++.+.+.|.+++ -=|-||----+|+++- .+| .+-.+|++..++.... -|. .|
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtp----------lEP--------RLgKKLieplt~li~s--T~AmSLlYECvN 279 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTP----------LEP--------RLGKKLIEPITELMES--TVAMSLLYECVN 279 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccc----------cCc--------hhhhhhhhHHHHHHHh--hHHHHHHHHHHH
Confidence 344445444333 2355555555555542 122 2222232222211110 000 01
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILL 992 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll 992 (1127)
-|-|. +++.-.+ .+..-++-+++.|--.+.+.+...++=+|.|+|+++. ..+|+-+.+..|+
T Consensus 280 TVVa~-s~s~g~~----------d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k-------tHp~~Vqa~kdlI 341 (877)
T KOG1059|consen 280 TVVAV-SMSSGMS----------DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK-------THPKAVQAHKDLI 341 (877)
T ss_pred Hheee-hhccCCC----------CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh-------hCHHHHHHhHHHH
Confidence 11111 3321110 2334567778888888889999999999999999995 3468899998886
Q ss_pred HHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHH
Q 035871 993 LLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ 1058 (1127)
Q Consensus 993 ~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q 1058 (1127)
-..-+|+.--||+.|-.=|-..-+ -.+...+++-|..-++..+. + .||+.|-.-
T Consensus 342 lrcL~DkD~SIRlrALdLl~gmVs----kkNl~eIVk~LM~~~~~ae~------t--~yrdell~~ 395 (877)
T KOG1059|consen 342 LRCLDDKDESIRLRALDLLYGMVS----KKNLMEIVKTLMKHVEKAEG------T--NYRDELLTR 395 (877)
T ss_pred HHHhccCCchhHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhccc------h--hHHHHHHHH
Confidence 666688999999998876621100 03466788888877777431 2 566766655
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=1.5 Score=55.22 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh
Q 035871 793 TQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRH 872 (1127)
Q Consensus 793 ~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~ 872 (1127)
....++.++ +.-+.|++|.+|+-|.|++|.+ ....+.+...+.|.+.++|.++-||.+|+-..+++-+-=..
T Consensus 83 ~a~~avnt~-~kD~~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~ 154 (734)
T KOG1061|consen 83 LAILAVNTF-LKDCEDPNPLIRALALRTMGCL-------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD 154 (734)
T ss_pred HHHhhhhhh-hccCCCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh
Confidence 334455544 3567999999999999999977 33456788889999999999999999999998888763110
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhc
Q 035871 873 CIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923 (1127)
Q Consensus 873 ~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~ 923 (1127)
-. . +..+ +..| ..++ .+++.-|-.||++||-.|...
T Consensus 155 ~~-----~---~~gl----~~~L-~~ll--~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 155 LV-----E---DSGL----VDAL-KDLL--SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred hc-----c---ccch----hHHH-HHHh--cCCCchHHHHHHHHHHHHHHh
Confidence 00 0 0112 2222 2222 234448999999999999633
No 98
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.25 E-value=4.9 Score=51.63 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=135.9
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcch-hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH-
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLK-ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID- 838 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~-~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~- 838 (1127)
..++|..+.||-...+-++.+ ..++..... ..++-.+. .+..+..|...-||.|..+.+-.... ++ ...|..
T Consensus 444 ~~l~de~~~V~lnli~~ls~~-~~v~~v~g~~~~s~slLp-~i~el~~d~~wRvr~ail~~ip~la~--q~--~~~~~~~ 517 (759)
T KOG0211|consen 444 GNLKDEDPIVRLNLIDKLSLL-EEVNDVIGISTVSNSLLP-AIVELAEDLLWRVRLAILEYIPQLAL--QL--GVEFFDE 517 (759)
T ss_pred hhcchhhHHHHHhhHHHHHHH-HhccCcccchhhhhhhhh-hhhhhccchhHHHHHHHHHHHHHHHH--hh--hhHHhhH
Confidence 456777788887776544321 111111111 11222333 23456677788899998888766542 11 123333
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLG 918 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALG 918 (1127)
....-+..-+.|....+|-.|+.-|--++...+.... ....+.+++.. ..+|+-++|.--..++-
T Consensus 518 ~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~------------~~~~i~k~L~~---~~q~~y~~R~t~l~si~ 582 (759)
T KOG0211|consen 518 KLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA------------RLEEIPKLLAM---DLQDNYLVRMTTLFSIH 582 (759)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh------------HHHhhHHHHHH---hcCcccchhhHHHHHHH
Confidence 3334444558899999999999888888877653221 11122333221 12445689988777777
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
.|...+ |.+...+..++.+...+.|..+.||-|+|+.|-.++.--.. ..-...|.+.|-.+. .|
T Consensus 583 ~la~v~-----------g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~-~d 646 (759)
T KOG0211|consen 583 ELAEVL-----------GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLS-SD 646 (759)
T ss_pred HHHHHh-----------ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhc-cC
Confidence 554221 44556788889999999999999999999999888753221 223345666655555 68
Q ss_pred CChHHHHHHHHHhcCCC
Q 035871 999 SNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~p~ 1015 (1127)
+|+.||.-|..|++...
T Consensus 647 ~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 647 QELDVRYRAILAFGSIE 663 (759)
T ss_pred cccchhHHHHHHHHHHH
Confidence 99999999999998544
No 99
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=9.4 Score=47.06 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=96.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK 910 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR 910 (1127)
+|..|++..++.++..+.|++..||..|+-+|=||+-......- ..| ..+..+.-+++.|.| .||
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~-~~F-------------n~iFdvL~klsaDsd~~V~ 142 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL-VYF-------------NEIFDVLCKLSADSDQNVR 142 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc-cch-------------HHHHHHHHHHhcCCccccc
Confidence 46679999999999999999999999999999999976432110 011 112222333467888 466
Q ss_pred hhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHH
Q 035871 911 SNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSI 990 (1127)
Q Consensus 911 snAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~ 990 (1127)
. |+.-|-.+.+-+-.+.- +. . -++..|+-|-..+-.-|+.+|-=--.=|.-+-.-|.+.. -.+.+..++.
T Consensus 143 ~-~aeLLdRLikdIVte~~--~t---F--sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m--~~yl~~~ldG 212 (675)
T KOG0212|consen 143 G-GAELLDRLIKDIVTESA--ST---F--SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEM--ISYLPSLLDG 212 (675)
T ss_pred c-HHHHHHHHHHHhccccc--cc---c--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHH--HhcchHHHHH
Confidence 4 44444444322222110 01 1 156778777777766676655433222333332232221 1466889999
Q ss_pred HHHHHhcCCChHHHHHHHHHhc
Q 035871 991 LLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 991 Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
|.+.|. +++-.||+-+-.+|+
T Consensus 213 Lf~~Ls-D~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 213 LFNMLS-DSSDEVRTLTDTLLS 233 (675)
T ss_pred HHHHhc-CCcHHHHHHHHHHHH
Confidence 999995 578899988877654
No 100
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.70 E-value=5.4 Score=45.10 Aligned_cols=120 Identities=28% Similarity=0.382 Sum_probs=70.2
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCC-----CCCchhH-----HHHHHH
Q 035871 496 HNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFP-----LKTDQTG-----LLVAAI 565 (1127)
Q Consensus 496 Hr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~-----~~~d~~a-----l~VaaL 565 (1127)
=.+++.++.-|++|+.|..+++.+..+++..| ++...+.+...+...++ -++|.++ +..+-.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~ 196 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALR 196 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHH
Confidence 34677889999999999999999999999988 24444444444444332 1234322 222222
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhCh-hhhhhhHHHH
Q 035871 566 SCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYP-NIMSSYWQQV 644 (1127)
Q Consensus 566 ~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp-~l~~~~~~~l 644 (1127)
.|| +++|.-.+- .+..|+.-.. .....++.++++.|.+.+..|+ ..+.+||..+
T Consensus 197 ~cl----~s~~~fa~~--------------------~~p~LleKL~-s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~i 251 (262)
T PF14500_consen 197 NCL----SSTPLFAPF--------------------AFPLLLEKLD-STSPSVKLDSLQTLKACIENYGADSLSPHWSTI 251 (262)
T ss_pred HHh----cCcHhhHHH--------------------HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 333 222222110 1122222111 1235699999999999998885 4567788766
Q ss_pred HHHH
Q 035871 645 STIV 648 (1127)
Q Consensus 645 ~~vl 648 (1127)
-+.+
T Consensus 252 w~~l 255 (262)
T PF14500_consen 252 WNAL 255 (262)
T ss_pred HHHH
Confidence 5544
No 101
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=0.84 Score=53.07 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=91.8
Q ss_pred HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccc
Q 035871 846 INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 846 ~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~ 925 (1127)
.-+++++..||.+|||-+|-...--.... ...+-...+.+|+..+. .++.+.||.+|-.|++.+.|.-.
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q---------e~v~E~~~L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKSQ---------EQVIELGALSKLLKILS--SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHHH---------HHHHHcccHHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCc
Confidence 36799999999999999996654211000 00111224566666432 55666899999999999987655
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHH
Q 035871 926 YTSSSHPASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKI 1003 (1127)
Q Consensus 926 ~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKV 1003 (1127)
+-.. ++ ..-.....|..+++. .++|.+--|..=++.+......-.. .-....|+.....+..+-.+.+
T Consensus 200 ~g~~------~f--l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~ 269 (342)
T KOG2160|consen 200 PGQD------EF--LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEV 269 (342)
T ss_pred HHHH------HH--HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhh
Confidence 4110 00 011125678888887 4678888888888888654322111 2234456666666666677778
Q ss_pred HHHHHHHhcC
Q 035871 1004 RIQAAAALAV 1013 (1127)
Q Consensus 1004 Ri~AA~AL~~ 1013 (1127)
+-.|-.++-.
T Consensus 270 ~e~~l~~~l~ 279 (342)
T KOG2160|consen 270 NEAALTALLS 279 (342)
T ss_pred hHHHHHHHHH
Confidence 8888877753
No 102
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=89.07 E-value=0.35 Score=35.85 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.2
Q ss_pred chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 959 VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 959 VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
||+.|++|||+++. +..++.|+.++.|
T Consensus 1 VR~~Aa~aLg~igd------------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD------------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------------HHHHHHHHHHhcC
Confidence 79999999999995 4588899998854
No 103
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.71 E-value=3.4 Score=52.23 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=72.7
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDK 839 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ 839 (1127)
.-++|++|++|+.|.+-.+.|+-.. ..++++..+ ..+.+|++|.||..|+-.+..+- .-+.+..+..
T Consensus 93 kD~~d~np~iR~lAlrtm~~l~v~~-------i~ey~~~Pl-~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g---- 160 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCLRVDK-------ITEYLCDPL-LKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG---- 160 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeEeehH-------HHHHHHHHH-HHhccCCChhHHHHHHHHHHHhhcCChhhccccc----
Confidence 4467889999999999988876432 235555554 47789999999999987777764 3445566654
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
+++.|-..+.|+++-|=.+|--||.+|-+.
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 445555556799999999999999998874
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.44 E-value=7.9 Score=51.19 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh----cccccccchHHHHHHHHHHHHhcCC-CCcchhchHHHHHHhhh
Q 035871 793 TQEFIISSLIDSALHDDVASVRSAACRAIGVIS----CFPQVSQSAEIIDKFIHAVEINTHD-PLVSVRITASWALANIC 867 (1127)
Q Consensus 793 ~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv----~~p~L~~d~~fv~~ai~aLl~~l~D-~~~~VRikAAWALGNL~ 867 (1127)
+-+.|+. .+..+..|.++.||++|.++|-.+. -+|.. +...|++=..+.|-..+.| ....||+-=|--||.+.
T Consensus 459 ~LDRVlP-Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~-daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 459 KLDRVLP-YFVHLLMDSEADVRATALETLTELLALVRDIPPS-DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHhhhHH-HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc-cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 3456666 5568899999999999999997663 33333 2345677777777777888 77788888888888888
Q ss_pred hhhhh----------c-ccccCCCCCCcc-cccH--HHHHHHHH-HHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCC
Q 035871 868 DSIRH----------C-IDDFAFKPSIDS-NANS--HLMASLTE-SALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSH 931 (1127)
Q Consensus 868 d~L~~----------~-~~~~~~~~~~~~-~is~--~lL~~L~e-~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~ 931 (1127)
..... + +...+.++-..+ .... +.|...++ ....++.|++ -||..=..+++-|..|+-.+-..
T Consensus 537 ~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN- 615 (1431)
T KOG1240|consen 537 KTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN- 615 (1431)
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc-
Confidence 75321 0 111111100001 1111 11222222 2333456777 79988888888888776554321
Q ss_pred CCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccc---ccccCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 932 PASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET---INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 932 ~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~---i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
+.++.-|+..|+|.+ |+-=.| .|.+-+ ++.+...-.+-+.|-|.+.|+|...| |=++|-
T Consensus 616 ----------D~iLshLiTfLNDkD----w~LR~a---FfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL 677 (1431)
T KOG1240|consen 616 ----------DVILSHLITFLNDKD----WRLRGA---FFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSAL 677 (1431)
T ss_pred ----------cchHHHHHHHhcCcc----HHHHHH---HHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHH
Confidence 234566777777764 543333 344433 44554444577889999999887776 888888
Q ss_pred HHhc
Q 035871 1009 AALA 1012 (1127)
Q Consensus 1009 ~AL~ 1012 (1127)
.+|.
T Consensus 678 ~~ls 681 (1431)
T KOG1240|consen 678 GSLS 681 (1431)
T ss_pred HHHH
Confidence 8875
No 105
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=78 Score=39.57 Aligned_cols=220 Identities=17% Similarity=0.148 Sum_probs=125.4
Q ss_pred HHccCChhHHHHHHHHHhccchhH----HhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHH-
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSV----FFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEI- 836 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~----f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~f- 836 (1127)
-+.+.+|+.|....+=+..+.+-. +..+| .+...| +..+.|+++.||--+-.+||.+- -++++++.+
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~-----~~ldGL-f~~LsD~s~eVr~~~~t~l~~fL--~eI~s~P~s~ 246 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLP-----SLLDGL-FNMLSDSSDEVRTLTDTLLSEFL--AEIRSSPSSM 246 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcch-----HHHHHH-HHHhcCCcHHHHHHHHHHHHHHH--HHHhcCcccc
Confidence 345567888888887776654322 22222 233433 46789999999999999998873 233444433
Q ss_pred -HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-h-hhhhH
Q 035871 837 -IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-K-IKSNA 913 (1127)
Q Consensus 837 -v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-K-VRsnA 913 (1127)
..+.++.+...+.-+++..+.+|- --|-.-..- . +...-+ .+..++.+.|....|++ + ++.-|
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al---~Wi~efV~i-------~---g~~~l~-~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKAL---TWIQEFVKI-------P---GRDLLL-YLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHH---HHHHHHhcC-------C---Ccchhh-hhhhhhhhcccCCCCCccccHHHHH
Confidence 356677777777788888887773 222221110 0 001000 12334444455566666 3 55554
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHH
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLL 993 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ 993 (1127)
.--=|.++.....+... ++ .-...+|+.|.+-+.+.++.-|.-+-.=+--++.+..-.+. .-.+++|..|++
T Consensus 313 ~~~n~~l~~l~s~~~~~-----~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~--~h~~~if~tLL~ 384 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLK-----EE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL--VHNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHhhhhhc-----cc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh--hhccHHHHHHHH
Confidence 44444455444433221 11 11347889999999999888887665555555443211111 235779999999
Q ss_pred HHhcCCChHHHHHHHHHhc
Q 035871 994 LLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 994 ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.|.| +.-.|=..+-.-|+
T Consensus 385 tLsd-~sd~vvl~~L~lla 402 (675)
T KOG0212|consen 385 TLSD-RSDEVVLLALSLLA 402 (675)
T ss_pred hhcC-chhHHHHHHHHHHH
Confidence 9965 43446566655554
No 106
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.15 E-value=32 Score=41.89 Aligned_cols=189 Identities=19% Similarity=0.235 Sum_probs=113.1
Q ss_pred HHHHHhhhhcCCCCchHhHHHH-HHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHH
Q 035871 603 LFTLLQCSERLASPAICFESLQ-ALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVT 681 (1127)
Q Consensus 603 L~~Ll~~~~~~~~~~vRlEAlQ-vL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l 681 (1127)
+..++.-..+..++.-|-||++ +...++.+-+++-..|+.++...+.++|.+...+ -...
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~-------------------~~k~ 348 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDE-------------------IIKK 348 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhh-------------------HHHH
Confidence 3344444444566778889998 6666778888888888888877788787542211 1223
Q ss_pred HHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHH
Q 035871 682 AAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPL 761 (1127)
Q Consensus 682 ~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~ 761 (1127)
-|.++|.|++++- ..+++| ++ .+.|.+.| .
T Consensus 349 laLrvL~~ml~~Q----------~~~l~D----------------------st-----------------E~ai~K~L-e 378 (516)
T KOG2956|consen 349 LALRVLREMLTNQ----------PARLFD----------------------ST-----------------EIAICKVL-E 378 (516)
T ss_pred HHHHHHHHHHHhc----------hHhhhc----------------------hH-----------------HHHHHHHH-H
Confidence 4788999887741 123433 11 23455555 4
Q ss_pred HHccCCh-hHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc--hHHHH
Q 035871 762 ILQHISS-MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS--AEIID 838 (1127)
Q Consensus 762 ~l~d~~~-~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d--~~fv~ 838 (1127)
+-.|++. .+|.++-+|+-.+.+ .+|... .-+|..+|+. .|+.-. .+++.-+-. +|..+..+ ...+.
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las----~~P~~~-I~~i~~~Ilt--~D~~~~--~~~iKm~Tk--l~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLAS----HLPLQC-IVNISPLILT--ADEPRA--VAVIKMLTK--LFERLSAEELLNLLP 447 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHh----hCchhH-HHHHhhHHhc--CcchHH--HHHHHHHHH--HHhhcCHHHHHHhhh
Confidence 5567765 556666665544321 244332 2334445544 333322 233323322 33344433 22367
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
+++++++.+-+..+..||-.|.+-|--|-..++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 889999999999999999999999998888776
No 107
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.86 E-value=9.7 Score=51.46 Aligned_cols=235 Identities=19% Similarity=0.244 Sum_probs=128.3
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhcc-chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHH---HHHHhhh
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGI-TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAA---CRAIGVI 824 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~I-gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA---~RALGvl 824 (1127)
.|.++|++..|+. +.+..=-||.++|-||..+ -+..|+..-+.--+.-. + ++..++|=-..||-|| +++||.+
T Consensus 1035 ~y~neIl~eLL~~-lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~-~-~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1035 EYLNEILDELLVN-LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWE-A-AFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666653 3444567999999999985 33344444332223222 2 3466788778899987 5566666
Q ss_pred h---cccccc-cchHHHHHHHHHHHH--hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHH-
Q 035871 825 S---CFPQVS-QSAEIIDKFIHAVEI--NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTE- 897 (1127)
Q Consensus 825 v---~~p~L~-~d~~fv~~ai~aLl~--~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e- 897 (1127)
+ +-+.-. ....++..+.+.|+. .+ .+...||. .+++-+-|-....... +-| .-+.++..|++
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~---~si~tl~dl~Kssg~~--lkP-----~~~~LIp~ll~~ 1180 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRR---FSIGTLMDLAKSSGKE--LKP-----HFPKLIPLLLNA 1180 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHH---HHHHHHHHHHHhchhh--hcc-----hhhHHHHHHHHH
Confidence 4 222111 223445555566654 23 44556774 4555555432221110 111 11122222222
Q ss_pred -----------HHHhhcc----CCchhhhhHHH------HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC-
Q 035871 898 -----------SALNLTK----DGDKIKSNAVR------GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG- 955 (1127)
Q Consensus 898 -----------~aL~a~~----D~DKVRsnAvR------ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~- 955 (1127)
.++++.+ --|..|.+|++ +++.+++.+ |...+|++++.+++.++.+
T Consensus 1181 ~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~i------------D~~vLeelip~l~el~R~sV 1248 (1702)
T KOG0915|consen 1181 YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYI------------DISVLEELIPRLTELVRGSV 1248 (1702)
T ss_pred ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHhccC
Confidence 1222211 11235666654 344443322 3345899999999999764
Q ss_pred CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 956 NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 956 n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+---|--++.-+.-+-.. +...-.|.....+.+|+.-++| +|--||+.-|.|.|
T Consensus 1249 gl~Tkvg~A~fI~~L~~r--~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1249 GLGTKVGCASFISLLVQR--LGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMG 1302 (1702)
T ss_pred CCCcchhHHHHHHHHHHH--hccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHH
Confidence 233333444444333222 2222347889999999999976 99999999999997
No 108
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=87.69 E-value=0.48 Score=35.12 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=22.1
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT 954 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~ 954 (1127)
||..|+++||+++ + +++++.|+++++|
T Consensus 1 VR~~Aa~aLg~ig---------------d----~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIG---------------D----PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG----------------S----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---------------C----HHHHHHHHHHhcC
Confidence 7999999999994 3 6788899888753
No 109
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.58 E-value=2.8 Score=52.94 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=72.7
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.+.+.|.|+++.+|+.|.+.|++|--..-. | +.. .-|-.+..|..|.||-.|+-|+-.+- +-|++..
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRvp~Ia--P----I~l--lAIk~~~~D~s~yVRk~AA~AIpKLY-----sLd~e~k 178 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRVPMIA--P----IML--LAIKKAVTDPSPYVRKTAAHAIPKLY-----SLDPEQK 178 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcchhhHH--H----HHH--HHHHHHhcCCcHHHHHHHHHhhHHHh-----cCChhhH
Confidence 355789999999999999999998644311 0 111 12345678999999999999997652 1233333
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
...++.|...|.|.++.|=--|..|.-.+|-.
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 44556666678999999999999999999864
No 110
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.53 E-value=6 Score=45.11 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=68.3
Q ss_pred HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccc
Q 035871 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDD 876 (1127)
Q Consensus 797 ~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~ 876 (1127)
++..+|.-+....++.||..|.+.||-++++-. .+....+.-+...++..+..||+.|.-++-.+.-.- ....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~--g~~~ 99 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTH--GIDI 99 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--Cchh
Confidence 444566677899999999999999999975332 233444445555555558899998877765544321 1111
Q ss_pred cCCCCCCc--ccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhh
Q 035871 877 FAFKPSID--SNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLS 921 (1127)
Q Consensus 877 ~~~~~~~~--~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl 921 (1127)
++.... +.....-+.+++...+ ..++++|+.-|+.++.+|+
T Consensus 100 --~~~~~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 100 --FDSESDNDESVDSKSLLKILTKFL--DSENPELQAIAVEGLCKLL 142 (298)
T ss_pred --ccchhccCccchHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Confidence 111000 1122222333333333 2346689999999999986
No 111
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.62 E-value=4 Score=50.63 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=90.2
Q ss_pred HHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 895 LTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 895 L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
-++..|.+++..+|+|.=|+.-+..+. . .++.+.|.+|+++++..+|.+..||-.|..+|..+.++
T Consensus 24 ~y~~il~~~kg~~k~K~Laaq~I~kff---k----------~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~- 89 (556)
T PF05918_consen 24 DYKEILDGVKGSPKEKRLAAQFIPKFF---K----------HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD- 89 (556)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHHHHH---C----------C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHH---h----------hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-
Confidence 344456678888899987776666553 2 23457899999999999999999999999999999875
Q ss_pred cccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHH
Q 035871 975 TINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVA 1054 (1127)
Q Consensus 975 ~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~ 1054 (1127)
...|...|...|+++|+. .+...+...-.||.. .|-..-..+..+++.-++...+ .| +.
T Consensus 90 -----~~~~v~kvaDvL~QlL~t-dd~~E~~~v~~sL~~-----ll~~d~k~tL~~lf~~i~~~~~---~d-------e~ 148 (556)
T PF05918_consen 90 -----NPEHVSKVADVLVQLLQT-DDPVELDAVKNSLMS-----LLKQDPKGTLTGLFSQIESSKS---GD-------EQ 148 (556)
T ss_dssp -------T-HHHHHHHHHHHTT----HHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHH---H---S--------HH
T ss_pred -----HHHHHhHHHHHHHHHHhc-ccHHHHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHhccc---Cc-------hH
Confidence 346899999999999975 445677777777752 2333344566666666653111 11 45
Q ss_pred HHHHHHHHHHHHHHH
Q 035871 1055 LQKQKSSFLEEWFKV 1069 (1127)
Q Consensus 1055 L~~Q~~~~l~~~l~~ 1069 (1127)
.++.+-.||-+-|.-
T Consensus 149 ~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 149 VRERALKFLREKLKP 163 (556)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666677554443
No 112
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.21 E-value=8.8 Score=46.65 Aligned_cols=106 Identities=9% Similarity=0.004 Sum_probs=74.3
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHH---HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE---FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~---~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
....|++..+|..||+||+++-+. .|.+.+. .++..++.++.+|.+..|--.|..+|-++.=--+-.+=..|.
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~----~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASG----APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhcc----CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 345688899999999999996432 4665443 355567889999999999999999998764111111112223
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSI 870 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L 870 (1127)
-++...+-...+|.+..+|..|-..+|-+.---
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 344455555678999999999999999887543
No 113
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.95 E-value=7.8 Score=48.17 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=48.3
Q ss_pred HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHH
Q 035871 785 VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALA 864 (1127)
Q Consensus 785 ~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALG 864 (1127)
.|..+|. .++..|.++ +.+|+|+|..||..|+|.|..++ +++..++.+.++.|...|.-.+...+.-.-+||-
T Consensus 49 ffk~FP~-l~~~Ai~a~-~DLcEDed~~iR~~aik~lp~~c-----k~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 49 FFKHFPD-LQEEAINAQ-LDLCEDEDVQIRKQAIKGLPQLC-----KDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHCC-GG-GHHHHHHHH-HHHHT-SSHHHHHHHHHHGGGG-------T--T-HHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHhhChh-hHHHHHHHH-HHHHhcccHHHHHHHHHhHHHHH-----HhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444543 334445544 47899999999999999999885 3457788999999988887666666666667764
Q ss_pred hhh
Q 035871 865 NIC 867 (1127)
Q Consensus 865 NL~ 867 (1127)
.+-
T Consensus 122 ~ll 124 (556)
T PF05918_consen 122 SLL 124 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 114
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=85.25 E-value=0.72 Score=36.89 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 942 E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
..+|+.|++.+.+++.+||=+||+||+|+-
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 347889999999999999999999999974
No 115
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=84.74 E-value=42 Score=44.95 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=76.0
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchh-HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKE-TQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV 830 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~-~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L 830 (1127)
+++|=.||+.-|.|.+..+|++=-+-+.++.- | +... .-++++. |+..++.|.++.|=..|.++|-.++.-.-+
T Consensus 615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi--~--VG~rs~seyllP-Ll~Q~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSI--F--VGWRSVSEYLLP-LLQQGLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred ccchHHHHHHHhcCccHHHHHHHHhhccceEE--E--EeeeeHHHHHHH-HHHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence 56666799999999999999999888876421 1 1111 2356665 677889999999999999999888754444
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcchhchHHH
Q 035871 831 SQSAEIIDKFIHAVEINTHDPLVSVRITASW 861 (1127)
Q Consensus 831 ~~d~~fv~~ai~aLl~~l~D~~~~VRikAAW 861 (1127)
+. ..+-++++.++-.+-.||.=||..+.=
T Consensus 690 ~K--~~v~~i~~~v~PlL~hPN~WIR~~~~~ 718 (1431)
T KOG1240|consen 690 RK--PAVKDILQDVLPLLCHPNLWIRRAVLG 718 (1431)
T ss_pred ch--HHHHHHHHhhhhheeCchHHHHHHHHH
Confidence 44 235666777777788999999976543
No 116
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.72 E-value=34 Score=43.40 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=71.0
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchh------HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSS------VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~------~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
++..+|..++.++|++-.++.||+-.+ ..++.|...+. ++. ++..-+.|.+|.+|..|...+-.+...|+.-
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~-Lv~-ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLND-LVG-LLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHH-HHH-HHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 444556666789999999999997432 33333332233 333 4456678999999999999998886555432
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
.. -...++.-+...+.|.+.-||-+|.--++.+
T Consensus 381 ~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 VG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 11 0245566666777999999999998555544
No 117
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.69 E-value=19 Score=46.02 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=44.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
+...=|+.-||+||.-||..+. .++..-.......+...+.|++..||-+|.++|-++.++
T Consensus 473 NRviLEn~ivRaaAv~alaKfg-----~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFG-----AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHh-----cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 3344478899999999999996 122211233445555668999999999999999999954
No 118
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.84 E-value=38 Score=43.54 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=64.9
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~ 882 (1127)
-.+++|.|+.+|+.|.|+|..| |= ++.+--+.-|+-+...|+++-||-.||-|+-.+=+. ++
T Consensus 114 Qk~L~DpN~LiRasALRvlSsI------Rv-p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL----------d~- 175 (968)
T KOG1060|consen 114 QKALKDPNQLIRASALRVLSSI------RV-PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL----------DP- 175 (968)
T ss_pred HhhhcCCcHHHHHHHHHHHHhc------ch-hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC----------Ch-
Confidence 3567999999999999999877 21 222333445666678999999999999998877652 11
Q ss_pred CcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 883 IDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 883 ~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
+.-+ .|.-+++. +..|++ +|-+.||-|.-.+
T Consensus 176 ---e~k~-qL~e~I~~---LLaD~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 176 ---EQKD-QLEEVIKK---LLADRSPLVVGSAVMAFEEV 207 (968)
T ss_pred ---hhHH-HHHHHHHH---HhcCCCCcchhHHHHHHHHh
Confidence 1112 23334443 357777 8999999998766
No 119
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.59 E-value=5.9 Score=46.31 Aligned_cols=156 Identities=15% Similarity=0.070 Sum_probs=92.6
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHH-----HHHhhhccCCCHhHHHHHHHHHhh
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIIS-----SLIDSALHDDVASVRSAACRAIGV 823 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~-----~Lll~~~~De~~~VRaAA~RALGv 823 (1127)
..|..++ ..++++++.||+.|.+-+|..- ..=| .-|+.++. .|+..+..|.+-.||..|.-|++.
T Consensus 124 ggl~~ll-----~~l~~~~~~lR~~Aa~Vigt~~----qNNP-~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Aiss 193 (342)
T KOG2160|consen 124 GGLVPLL-----GYLENSDAELRELAARVIGTAV----QNNP-KSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISS 193 (342)
T ss_pred cCHHHHH-----HHhcCCcHHHHHHHHHHHHHHH----hcCH-HHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 4565433 3678999999999999999842 2222 23444442 355555677777899999999999
Q ss_pred hhcccccccchHHHHHHHHHHHHhcCC--CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh
Q 035871 824 ISCFPQVSQSAEIIDKFIHAVEINTHD--PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN 901 (1127)
Q Consensus 824 lv~~p~L~~d~~fv~~ai~aLl~~l~D--~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~ 901 (1127)
++.--.-+.+.-+.-.=...|...+++ .+...+.||..-++++...-.... +.++.......++...
T Consensus 194 LIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~----------d~~~~~~f~~~~~~l~- 262 (342)
T KOG2160|consen 194 LIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE----------DIASSLGFQRVLENLI- 262 (342)
T ss_pred HHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh----------hHHHHhhhhHHHHHHh-
Confidence 872111111111111113455556666 666777899999998887533211 1233332333333211
Q ss_pred hccCCchhhhhHHHHHhhhhhcccc
Q 035871 902 LTKDGDKIKSNAVRGLGNLSRFVKY 926 (1127)
Q Consensus 902 a~~D~DKVRsnAvRALGnLl~~l~~ 926 (1127)
..++..++.+|++++=.++.....
T Consensus 263 -~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 263 -SSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred -hccchhhhHHHHHHHHHHHHHHhh
Confidence 345557999988888777654443
No 120
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=83.51 E-value=11 Score=48.89 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=125.5
Q ss_pred HhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHh
Q 035871 786 FFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALAN 865 (1127)
Q Consensus 786 f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGN 865 (1127)
|+.||+...--.++.-+...+.|+++-=|..|.+.+.....-+.......|.+...-.+-....|.|.+|=..|+--|+-
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ 321 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL 321 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 44444433333333333445678999999999999988764333222222223333333345789999999999999999
Q ss_pred hhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh---hhHHHHHhhhhhccccCCCCCCCCCCChhHH
Q 035871 866 ICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK---SNAVRGLGNLSRFVKYTSSSHPASLGDSRWL 941 (1127)
Q Consensus 866 L~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR---snAvRALGnLl~~l~~~~~~~~~~~g~~~~~ 941 (1127)
|+..|+..- .+++. .+-+.++.+ ++|+- .+| ..++++.||.. -.
T Consensus 322 ia~~lr~~~-----~~~~~-~v~p~lld~--------lkekk~~l~d~l~~~~d~~~ns~------------------~l 369 (815)
T KOG1820|consen 322 IAKKLRPLF-----RKYAK-NVFPSLLDR--------LKEKKSELRDALLKALDAILNST------------------PL 369 (815)
T ss_pred HHHhcchhh-----HHHHH-hhcchHHHH--------hhhccHHHHHHHHHHHHHHHhcc------------------cH
Confidence 999887542 22111 111222333 35544 343 45555555521 25
Q ss_pred HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 942 E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
++++...+..+.++|+++|-----.++..++...-...+.+-...+++.++..+.| .+-.||..|..+++..
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D-~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHIND-TDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccC-CcHHHHHHHHHHHHHH
Confidence 78888999999999999998777778887765432223345567889999999966 5567999999999844
No 121
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=81.82 E-value=70 Score=40.49 Aligned_cols=188 Identities=24% Similarity=0.251 Sum_probs=99.8
Q ss_pred hhhhhhhHHHHHHHHH---HHHhhCCc-cccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCC
Q 035871 387 SVQSSKVRVAALVCLQ---DLCRADPK-SFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGP 462 (1127)
Q Consensus 387 r~~~skVR~~AL~~L~---al~k~~~K-~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gs 462 (1127)
++.+.++|.+|+.|+. .+.+..+- .++-| -.+=|.... .+-..+-|++||++.-|..++..+..++.++
T Consensus 191 ~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l--~~L~d~~v~-----~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 191 MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLL--GLLKDKGVN-----IRCVVTRLLKDPDFSERLRSLECLVPYLRKS 263 (678)
T ss_pred HhhhHHHHHHHHHHhhccceeeecCchhHHHHH--HHHhccccc-----hhhhhhhhhhCCCccHHHHHHHHHHHHHhcc
Confidence 4457799999999998 55554442 22211 112222221 2346688999999999999999999999997
Q ss_pred ch--------hhhhh-----hhhccccCCcccccchHHHH------HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhH
Q 035871 463 ST--------VFLQV-----AEYKESIKCGSFMPLSTSYG------HIIMQLHNGIIYLIQRETHDRLLASLFKILMPLI 523 (1127)
Q Consensus 463 k~--------~llq~-----AE~~es~~~~SFTsfS~tLg------~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LV 523 (1127)
.. .|.-+ ++|..- ..=|.|+=.++. -.+.++--.|..--..|....+++.+|||-+.|-
T Consensus 264 ~~~d~l~~~~~~~dmgd~~i~q~~~i--~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~ 341 (678)
T KOG1293|consen 264 FNYDPLPWWFIFFDMGDSLIVQYNCI--VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLA 341 (678)
T ss_pred ccccccccceeeccCchHHHHHHhhh--eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHh
Confidence 22 12111 222110 112233222221 1112222222222222344557889999999998
Q ss_pred hcccCCCCC------------CCchHHHHHH-----HHHHHhhcCCCCCchhHHHHHHHHHHHHH------HhcCCChhH
Q 035871 524 SCTPYSRMP------------GELMPNLIIS-----LRARIEEGFPLKTDQTGLLVAAISCLTAA------LSTSPAPVQ 580 (1127)
Q Consensus 524 q~TPY~RL~------------~~Ll~~vv~~-----l~~~i~~~~~~~~d~~al~VaaL~cL~av------ls~~~~~~e 580 (1127)
+.-|=.|+= ++.--..-++ +...+.+. ..++|+. .+.|++-||-.+ +.+.+....
T Consensus 342 a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~-~~~kd~~-~~aaa~l~~~s~srsV~aL~tg~~~~d 419 (678)
T KOG1293|consen 342 ASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL-PPIKDHD-FVAAALLCLKSFSRSVSALRTGLKRND 419 (678)
T ss_pred hcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc-cccccHH-HHHHHHHHHHHHHHHHHHHHcCCccch
Confidence 888755431 1110000001 11122222 2346665 556777777664 567776666
Q ss_pred HHHHH
Q 035871 581 VKQMF 585 (1127)
Q Consensus 581 V~~~L 585 (1127)
|.+.|
T Consensus 420 v~~pl 424 (678)
T KOG1293|consen 420 VAQPL 424 (678)
T ss_pred hHHHH
Confidence 65533
No 122
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.11 E-value=1.1e+02 Score=34.92 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=88.5
Q ss_pred HhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHH
Q 035871 503 IQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVK 582 (1127)
Q Consensus 503 L~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~ 582 (1127)
|-+ .+..+....+.+|+.++...|-++|...=+.-+++-...++ . |+..+ ..++..+.+++.......+..
T Consensus 8 Lts-ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl----~---D~~~~-~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 8 LTS-EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL----D---DHACV-QPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred hCC-CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh----c---cHhhH-HHHHHHHHHHHhCcCCChhhH
Confidence 445 36668889999999999999988888766655555443333 2 33333 355777777776555444332
Q ss_pred HHHHHhhhcCCCCCCCcchhHHHHHhhh-hcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcc
Q 035871 583 QMFLEEISAGSVEVDKRSGVLFTLLQCS-ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPA 661 (1127)
Q Consensus 583 ~~L~~e~ssg~~~~~~~s~~L~~Ll~~~-~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~ 661 (1127)
.. ++..+++.- -+....+.|..++++|..+..+|..-+...-.. .+..+++...-|-
T Consensus 79 ~~-----------------i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~---fv~~~i~~~~gEk-- 136 (262)
T PF14500_consen 79 VK-----------------ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDD---FVYGFIQLIDGEK-- 136 (262)
T ss_pred HH-----------------HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhH---HHHHHHHHhccCC--
Confidence 21 233333221 123345889999999999999887666433333 3333333332221
Q ss_pred cccCCCCCCCccccchhHHHHHHHHHHHHHH
Q 035871 662 KAWKGHVGNTAGFIGEKVVTAAIKVLDESLR 692 (1127)
Q Consensus 662 ~~~~g~~~~~~~l~g~~~~l~A~klLdE~lr 692 (1127)
+=||++.+.+++..+++
T Consensus 137 --------------DPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 137 --------------DPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --------------CHHHHHHHHHHHHHHHH
Confidence 12899888888776544
No 123
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=80.80 E-value=1.1e+02 Score=36.40 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=41.2
Q ss_pred hHHHHHc--cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHH
Q 035871 758 HMPLILQ--HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAI 821 (1127)
Q Consensus 758 ~Lp~~l~--d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RAL 821 (1127)
++|.+.. ...|.+|+.||+.+...-+ .+|++.-..++..+ ...+.+++..|+.-|+.|+
T Consensus 310 v~peL~~~~~~~piLka~aik~~~~Fr~----~l~~~~l~~~~~~l-~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 310 VLPELQPDVNSHPILKADAIKFLYTFRN----QLPKEQLLQIFPLL-VNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TCHHHH-SS-S-HHHHHHHHHHHHHHGG----GS-HHHHHHHHHHH-HHHTTSS-HHHHHHHHHHH
T ss_pred hHHHhcccCCCCcchHHHHHHHHHHHHh----hCCHHHHHHHHHHH-HHHhCCCCcchhhhhhhhC
Confidence 4565542 3348999999999987544 36776666777744 5778999999999999875
No 124
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.71 E-value=7.1 Score=50.95 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=69.8
Q ss_pred HHHccC-ChhHHHHHHHHHhccchhHHhhcchhH----HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-----cccc
Q 035871 761 LILQHI-SSMVRTAAVTCFAGITSSVFFSLLKET----QEFIISSLIDSALHDDVASVRSAACRAIGVISC-----FPQV 830 (1127)
Q Consensus 761 ~~l~d~-~~~VRaaAc~cLa~Igs~~f~~Lp~~~----q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-----~p~L 830 (1127)
..+.|+ .+.+|--.|=|||.+ |+..+..+ +...-..|+ ..+.|+-|-||+||+.|||.++- |++-
T Consensus 606 e~lnd~~~pLLrQW~~icLG~L----W~d~~~Arw~G~r~~AhekL~-~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRL----WEDYDEARWSGRRDNAHEKLI-LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHH----hhhcchhhhccccccHHHHHH-HHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 344553 588999999999986 55554422 111112233 45699999999999999999974 4442
Q ss_pred cc--ch--------HHHHHHHH----HHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 831 SQ--SA--------EIIDKFIH----AVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 831 ~~--d~--------~fv~~ai~----aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.+ +. .-+|+.+. .++....|.++-||..-+-+|+.+.-
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 21 11 11455554 56667899999999999988887664
No 125
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.53 E-value=56 Score=41.67 Aligned_cols=190 Identities=19% Similarity=0.198 Sum_probs=111.1
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH--HH----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET--QE----FIISSLIDSALHDDVASVRSAACRAIGVISC 826 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~--q~----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~ 826 (1127)
.+|...+..++..+.+.+.+.--+.||. |.+--+-. .+ .+....+...++-.|+.||+.|+..+=.+
T Consensus 129 d~iq~~~~haiha~rsp~~sk~r~Vl~~-----F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~-- 201 (1005)
T KOG1949|consen 129 DCIQDFMFHAIHAPRSPVHSKVREVLSY-----FHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEA-- 201 (1005)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHh--
Confidence 4444555555555554444554455553 32211111 11 12222345667889999999998876554
Q ss_pred ccccccch--HH----HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHH----HHHHH
Q 035871 827 FPQVSQSA--EI----IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHL----MASLT 896 (1127)
Q Consensus 827 ~p~L~~d~--~f----v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~l----L~~L~ 896 (1127)
||-...|. +- +++=-.-+...++|+.+.||..|.--+..+....= +.+++.. +.++.
T Consensus 202 fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW-------------e~iP~~i~~~ll~kI~ 268 (1005)
T KOG1949|consen 202 FPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW-------------EMIPPTILIDLLKKIT 268 (1005)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-------------HHcCHHHHHHHHHHHH
Confidence 78776654 11 22223445567899999999999988887776421 1344443 44444
Q ss_pred HHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccc
Q 035871 897 ESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 897 e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~ 975 (1127)
..+ +.|-- .||...+..|-.++ + +|.. ....|..+++|--.+.|+.-|||--+---|..+-...+
T Consensus 269 d~~---a~dt~s~VR~svf~gl~~~l----~----np~s---h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra 334 (1005)
T KOG1949|consen 269 DEL---AFDTSSDVRCSVFKGLPMIL----D----NPLS---HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA 334 (1005)
T ss_pred HHh---hhccchheehhHhcCcHHHH----c----Cccc---hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhh
Confidence 322 23333 69999999998886 1 2221 12356666666666678889999866655555544444
Q ss_pred c
Q 035871 976 I 976 (1127)
Q Consensus 976 i 976 (1127)
+
T Consensus 335 ~ 335 (1005)
T KOG1949|consen 335 A 335 (1005)
T ss_pred h
Confidence 3
No 126
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.23 E-value=4.6 Score=50.63 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=83.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|-.+|.|+.|+||+.|..-+..+.+.-|+.+|.....-++.-++....+|....||-+-..-|-.+..-|. +. ..++
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~-sh--~~le 301 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL-SH--PLLE 301 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc-ch--hHHH
Confidence 44678999999999999999999999999999977766666666667789889999999988877742221 11 1235
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
-..+++-..++|.+..||.-+.=-|..|-+.
T Consensus 302 ~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 302 QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 5566666788999999998887777766653
No 127
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.99 E-value=7.4 Score=40.77 Aligned_cols=108 Identities=21% Similarity=0.367 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCC-----------CCCC--------------CCChhHHHH
Q 035871 889 SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSS-----------HPAS--------------LGDSRWLER 943 (1127)
Q Consensus 889 ~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~-----------~~~~--------------~g~~~~~E~ 943 (1127)
|+++..|+.. ++ .+....+|..|.|.||.||.+-++.+=. +... ..+.-....
T Consensus 9 P~LL~~L~~i-Lk-~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~v 86 (160)
T PF11865_consen 9 PELLDILLNI-LK-TEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTV 86 (160)
T ss_pred HHHHHHHHHH-HH-hCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHH
Confidence 4556555543 22 2244689999999999999776653310 0000 001112344
Q ss_pred HHHHHHHhhccCC-ccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCC
Q 035871 944 IVQALVSCVTTGN-VKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSN 1000 (1127)
Q Consensus 944 ~i~aLlk~l~~~n-~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~N 1000 (1127)
++++|++-++|.. ..-.-++..|+-++|+. ....+.+.-++++|.++.++++|.+
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~--l~~~cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKS--LGLKCVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh--cCcCchhHHHHHhHHHHHHHHhCCH
Confidence 5677777776654 33334677777777744 3444566777788888888776664
No 128
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=77.29 E-value=2.4 Score=31.71 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=22.9
Q ss_pred cchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 958 KVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 958 KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
.||+.|++|||++... .+++.|..++.|
T Consensus 2 ~vR~~aa~aLg~~~~~------------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDE------------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCH------------hHHHHHHHHhcC
Confidence 5899999999999753 477888888854
No 129
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.89 E-value=8.4 Score=50.86 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=94.2
Q ss_pred CCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccc
Q 035871 808 DDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSN 886 (1127)
Q Consensus 808 De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~ 886 (1127)
-.+|..++||--|||.+.+ =++.|-+...+-+...++ -|++-||.++.-|||-++=+- .. .-+.
T Consensus 934 ~sdp~Lq~AAtLaL~klM~-----iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~f---------pn-lie~ 998 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMC-----ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF---------PN-LIEP 998 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc---------cc-ccch
Confidence 3679999999999999853 456777788888888887 899999999999988776321 10 0112
Q ss_pred ccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh----
Q 035871 887 ANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW---- 961 (1127)
Q Consensus 887 is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW---- 961 (1127)
+++.+..+ ..|.+ -||.+|+-.|.+|.-. +-.-.+.-+..+..|+.|++..+|=
T Consensus 999 ~T~~Ly~r--------L~D~~~~vRkta~lvlshLILn-------------dmiKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 999 WTEHLYRR--------LRDESPSVRKTALLVLSHLILN-------------DMIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred hhHHHHHH--------hcCccHHHHHHHHHHHHHHHHh-------------hhhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 33333332 35555 6999999998888410 0111233344556666666655443
Q ss_pred ---------hHHHHH-----HhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 962 ---------NVCRAL-----SNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 962 ---------NAc~AL-----Gnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
|+.|-| |.+ .|. .+ +.+--..|++-|+.++++++
T Consensus 1058 FF~Els~k~n~iynlLPdil~~L-s~~--~l-~~~~~~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1058 FFKELSSKGNTIYNLLPDILSRL-SNG--NL-EEESYKTVMEFLIGLIKKDE 1105 (1251)
T ss_pred HHHHhhhcccchhhhchHHHHhh-ccC--cc-cchhhHHHHHHHHHHhcccc
Confidence 333321 111 111 11 11223679999999999886
No 130
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=76.87 E-value=1.9 Score=33.58 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=25.2
Q ss_pred HHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 944 IVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 944 ~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
+++.|++.+..++.+++.+||.||+|+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5778889898899999999999999974
No 131
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=76.71 E-value=1.7 Score=33.78 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.++.|...+..++..|+..|+|+|+||+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45667777778889999999999999973
No 132
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=76.37 E-value=11 Score=46.91 Aligned_cols=116 Identities=24% Similarity=0.256 Sum_probs=72.9
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCC----CCC-CCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSS----SHP-ASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINL 978 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~----~~~-~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~ 978 (1127)
.+++.++..|+-++|.+.+-.....- ..+ .......+.+.+.+.|-...+.++.+.+--+-.||||++.-.
T Consensus 446 ~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~---- 521 (618)
T PF01347_consen 446 KNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE---- 521 (618)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG----
T ss_pred cCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch----
Confidence 46678999999999999887665420 000 001111233444444444556788899999999999999543
Q ss_pred cCCCchhHHHHHHHHHHhcC--CChHHHHHHHHHhcCCCcccccCCchH-HHHHHHHHHHHH
Q 035871 979 EDMDWAPSVFSILLLLLRDS--SNFKIRIQAAAALAVPSSVSDYGKSFS-DVVQGLEHILEN 1037 (1127)
Q Consensus 979 ~~~~wa~~v~~~Ll~ll~~~--~NFKVRi~AA~AL~~p~~R~~yG~~~~-~V~~~L~~aLe~ 1037 (1127)
+++.|...+.+. ..--||..|..||. .+....+ .|...|...+.+
T Consensus 522 --------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr------~~~~~~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 522 --------SIPVLLPYIEGKEEVPHFIRVAAIQALR------RLAKHCPEKVREILLPIFMN 569 (618)
T ss_dssp --------GHHHHHTTSTTSS-S-HHHHHHHHHTTT------TGGGT-HHHHHHHHHHHHH-
T ss_pred --------hhHHHHhHhhhccccchHHHHHHHHHHH------HHhhcCcHHHHHHHHHHhcC
Confidence 566777777655 24569999999998 2344444 677777777776
No 133
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=75.56 E-value=1.8e+02 Score=34.56 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHHhHhcccC-CCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 035871 508 HDRLLASLFKILMPLISCTPY-SRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFL 586 (1127)
Q Consensus 508 ~~~vLtqlLKcLa~LVq~TPY-~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~ 586 (1127)
+.++..|+|||++.++.+.=. ..|+.++..-++..+...+.+... +. .+....+.||. .+-..+++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~---~K-~i~~~~l~~ls----~Q~f~~~~~---- 126 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS---PK-SICTHYLWCLS----DQKFSPKIM---- 126 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC---CH-HHHHHHHHHHH----cCCCCCccc----
Confidence 567889999999999977655 566777777666655444433222 22 24445565553 333322220
Q ss_pred HhhhcCCCCCCCcchhHHH-HHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHH
Q 035871 587 EEISAGSVEVDKRSGVLFT-LLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKI 651 (1127)
Q Consensus 587 ~e~ssg~~~~~~~s~~L~~-Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~ 651 (1127)
.....+.+.. +...-+.-.+..+-.|.++++..+...+|..+..|-......+...
T Consensus 127 ---------~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~ 183 (372)
T PF12231_consen 127 ---------TSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPD 183 (372)
T ss_pred ---------chhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111222 2222222334678899999999999999999988877665544444
No 134
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.68 E-value=82 Score=40.65 Aligned_cols=216 Identities=19% Similarity=0.160 Sum_probs=105.8
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDK 839 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ 839 (1127)
.++.+..-+|---|.++.-.+... .+++.+. .++ .+--.+.-..+..|.||.|.|-.+. .+|..-. .
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~----~~r~l~p-avs-~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~------~ 319 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNT----NSRELAP-AVS-VLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT------V 319 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhcccc----CHhhcch-HHH-HHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc------c
Confidence 466666666655555554443211 1222222 222 2223356688999999999998876 5555422 2
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
+-..|.....|+|-++ |..|..-+-.+ .. +. .+ +.|-+.+-.-+.=..|+- .|-.+|+|+|-
T Consensus 320 cN~elE~lItd~NrsI---at~AITtLLKT---G~-----e~----sv--~rLm~qI~~fv~disDeFKivvvdai~sLc 382 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSI---ATLAITTLLKT---GT-----ES----SV--DRLMKQISSFVSDISDEFKIVVVDAIRSLC 382 (865)
T ss_pred cchhHHhhhcccccch---hHHHHHHHHHh---cc-----hh----HH--HHHHHHHHHHHHhccccceEEeHHHHHHHH
Confidence 3334444557888554 44443322221 10 10 11 112222222121123444 58899999986
Q ss_pred hhhhccccCC------CCCCCC-CCChhHHHHHHHHHHHhhc-cCCccchh---------------hHHHHHHhhhcccc
Q 035871 919 NLSRFVKYTS------SSHPAS-LGDSRWLERIVQALVSCVT-TGNVKVQW---------------NVCRALSNLFLNET 975 (1127)
Q Consensus 919 nLl~~l~~~~------~~~~~~-~g~~~~~E~~i~aLlk~l~-~~n~KVRW---------------NAc~ALGnl~~n~~ 975 (1127)
+.- +.++ +++-+. .|.-+.-..+|++++..+. ..++|.+- =+-.-|+-++..-.
T Consensus 383 ~~f---p~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP 459 (865)
T KOG1078|consen 383 LKF---PRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGP 459 (865)
T ss_pred hhc---cHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCC
Confidence 651 1111 000000 1222334455666666664 34555442 12223444444322
Q ss_pred ccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 976 INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 976 i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
....+..+-.-+|+.+. =.|+.||-.|..||+.
T Consensus 460 ~a~~Pskyir~iyNRvi-----LEn~ivRaaAv~alaK 492 (865)
T KOG1078|consen 460 KAPNPSKYIRFIYNRVI-----LENAIVRAAAVSALAK 492 (865)
T ss_pred CCCCcchhhHHHhhhhh-----hhhhhhHHHHHHHHHH
Confidence 22223345555666543 2789999999999983
No 135
>PF05536 Neurochondrin: Neurochondrin
Probab=74.09 E-value=32 Score=42.91 Aligned_cols=177 Identities=17% Similarity=0.064 Sum_probs=116.6
Q ss_pred HhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCc-chhchHHHHHHhhhhhhhhcccccCCCCCCcccccH
Q 035871 811 ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLV-SVRITASWALANICDSIRHCIDDFAFKPSIDSNANS 889 (1127)
Q Consensus 811 ~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~-~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~ 889 (1127)
..-+.-|.--|.-++.-|.+..+..++ .-|+.+++.+..... .+-..|---|..|...= ... ..-+..
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~-~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~---------~aLl~~ 139 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMV-SRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGA---------KALLES 139 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhH---------HHHHhc
Confidence 345666777777777888888887775 556777777665555 55556666666655320 000 001112
Q ss_pred HHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHh
Q 035871 890 HLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN 969 (1127)
Q Consensus 890 ~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGn 969 (1127)
..+..|++.+. ++..+.-.|...|.++++-...+... .+......++..|.+......-.-++.+|.=|++
T Consensus 140 g~v~~L~ei~~----~~~~~~E~Al~lL~~Lls~~~~~~~~-----~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~ 210 (543)
T PF05536_consen 140 GAVPALCEIIP----NQSFQMEIALNLLLNLLSRLGQKSWA-----EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSA 210 (543)
T ss_pred CCHHHHHHHHH----hCcchHHHHHHHHHHHHHhcchhhhh-----hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 23566777644 37789999999999998765543321 2222345566666666666566778899999999
Q ss_pred hhcccccc----ccCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 035871 970 LFLNETIN----LEDMDWAPSVFSILLLLLRDSSNFKIRIQA 1007 (1127)
Q Consensus 970 l~~n~~i~----~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~A 1007 (1127)
++.+..+. ...+.|...++..|-..|++-..-+=|-.|
T Consensus 211 ~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 211 FLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred hcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99887432 346789999999999999876666666544
No 136
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=73.56 E-value=99 Score=35.92 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=131.9
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
..++++.+|-.-++.+-....++++||+.-....=..+|++ ++..+ -..++|..+.||-+=++.+|....-+.-.
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~----~~~~~-~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKK----VVDAF-KKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHH----HHHHH-HHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 45667777766667788889999999887321110234543 33332 25579999999999999999985411111
Q ss_pred cchHHHHHHHHHHHHh----cCCCCcchh---chHHHHHHhhhhhhhhccc-------ccCCCCCCcccccHHHHHHHHH
Q 035871 832 QSAEIIDKFIHAVEIN----THDPLVSVR---ITASWALANICDSIRHCID-------DFAFKPSIDSNANSHLMASLTE 897 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~----l~D~~~~VR---ikAAWALGNL~d~L~~~~~-------~~~~~~~~~~~is~~lL~~L~e 897 (1127)
.-..|.+.+++.++.. ...|...+. +-+|.++--++..-....+ ....++...=-.++....++
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl-- 173 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL-- 173 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--
Confidence 2345566666666654 455555543 2244443331110000000 00001000001122222221
Q ss_pred HHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC--CccchhhHHHHHHhhhcccc
Q 035871 898 SALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG--NVKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 898 ~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~--n~KVRWNAc~ALGnl~~n~~ 975 (1127)
-.+..-...+|||-.+......... ++. ....-++++-.+.+. ..+||--|..+|..++....
T Consensus 174 -------~~~~d~~w~~~al~~~~~~~~~~~~------~~~--~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 174 -------ASEEDLCWLLRALEALLSDHPSELS------SDK--SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred -------CCHhHHHHHHHHHHHHHhcchhhhh------hhH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 2222344567777766533333211 111 344567888888887 89999999999999985532
Q ss_pred ccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC-chHHHHHHHHHHHHHh
Q 035871 976 INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK-SFSDVVQGLEHILENL 1038 (1127)
Q Consensus 976 i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~-~~~~V~~~L~~aLe~~ 1038 (1127)
-. -+..++..+-+.+.+.+..+.-. . ....+. +...|.++++.+-+..
T Consensus 239 ~~-----l~~~li~~l~~~l~~~~~~~~~s----~------~~~~~~~~~~~v~~ai~~~~~~~ 287 (339)
T PF12074_consen 239 EL-----LSKSLISGLWKWLSSSETGDKES----S------AENSSDKNLSPVLSAICLAPADL 287 (339)
T ss_pred HH-----HHHHHHHHHHHHHHhcccccccc----c------cccccccccccchHHHHhhhHhh
Confidence 11 34567777777775544321110 0 111221 2345777777776654
No 137
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=73.38 E-value=4.6 Score=30.16 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCC
Q 035871 812 SVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDP 851 (1127)
Q Consensus 812 ~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~ 851 (1127)
.||.+|+++||.+ ++ ..+++.|...++|+
T Consensus 2 ~vR~~aa~aLg~~------~~-----~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL------GD-----EEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc------CC-----HhHHHHHHHHhcCC
Confidence 5999999999998 33 46778888777774
No 138
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.60 E-value=26 Score=43.54 Aligned_cols=149 Identities=14% Similarity=0.100 Sum_probs=92.9
Q ss_pred CCHhHHHHHHHHHhhhhcccccccch-------HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 809 DVASVRSAACRAIGVISCFPQVSQSA-------EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 809 e~~~VRaAA~RALGvlv~~p~L~~d~-------~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
.++.+|..|.-++|.++---|...+. .|+..+...|.....+.+...+.-+--||||++..-..
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i--------- 479 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSI--------- 479 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHH---------
Confidence 46789999999999987434443321 23333333333444566777889999999999963211
Q ss_pred CCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCcc
Q 035871 882 SIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT--GNVK 958 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~K 958 (1127)
..+...++ ...+ ...+|..|+.||.++.... -+.+.+.|+....+ .+..
T Consensus 480 --------~~l~~~l~----~~~~~~~~iR~~Av~Alr~~a~~~----------------p~~v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 480 --------KVLEPYLE----GAEPLSTFIRLAAILALRNLAKRD----------------PRKVQEVLLPIYLNRAEPPE 531 (574)
T ss_pred --------HHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHhC----------------chHHHHHHHHHHcCCCCChH
Confidence 11222222 1122 2269999999999874211 13344566666643 6788
Q ss_pred chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHH
Q 035871 959 VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRI 1005 (1127)
Q Consensus 959 VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi 1005 (1127)
||--|+.+| |-.||. ..++..+...+..++|.-|+-
T Consensus 532 vRiaA~~~l--m~t~P~---------~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 532 VRMAAVLVL--METKPS---------VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHHHH--HhcCCC---------HHHHHHHHHHHhhcCcHHHHH
Confidence 999888886 333352 346778888888888888864
No 139
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.77 E-value=20 Score=34.42 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=52.3
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
.-++|+.+.||+.|...|..++.-.+ ....-+......++..++|+++-|=.+|.-+|+.+++.
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 44689999999999999999986444 12233456677778889999999999999999999986
No 140
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.04 E-value=40 Score=35.43 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 035871 490 HIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLT 569 (1127)
Q Consensus 490 ~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~ 569 (1127)
.-+..+=..+...|+. +++.-.-..+..+.++|+..||++|-.+- ..-++.+.+.+.. .|...++.++..+++
T Consensus 21 ~~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~-----~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 21 SALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK-----PDPPSVLEAAIITLT 93 (165)
T ss_pred HHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC-----CCCHHHHHHHHHHHH
Confidence 3344444445555555 44445556777777889998888884222 3334444444432 233346667888888
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHH
Q 035871 570 AALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVF 649 (1127)
Q Consensus 570 avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~ 649 (1127)
.++.--...++.. .|+. .+.-++++..+++..+. .....+++.+|..+..+||....+|-.++...+.
T Consensus 94 ~l~~~~~~~p~l~----Rei~-----tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 94 RLFDLIRGKPTLT----REIA-----TPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred HHHHHhcCCCchH----HHHh-----hccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 8875444444432 2221 12233455556665543 5677899999999999999999999999888777
Q ss_pred HHH
Q 035871 650 KIL 652 (1127)
Q Consensus 650 ~~L 652 (1127)
.++
T Consensus 162 ~ll 164 (165)
T PF08167_consen 162 SLL 164 (165)
T ss_pred HHh
Confidence 654
No 141
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.99 E-value=22 Score=45.11 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=82.9
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC
Q 035871 826 CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD 905 (1127)
Q Consensus 826 ~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D 905 (1127)
.+|.+.-..+||.-+.--++...+-++-+||.+..--|+-+.|... .+++.+-.+|.+.++.-..|
T Consensus 72 sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~--------------eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 72 SLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA--------------EIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred hhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc--------------ccCHHHHHHHHHHHHHHHhc
Confidence 4555555555788888889999999999999999988888887422 35566677788888888889
Q ss_pred Cc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc-cCCccchhhHHHHHHhh
Q 035871 906 GD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT-TGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 906 ~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~-~~n~KVRWNAc~ALGnl 970 (1127)
.+ .||-.||-||..+= ..+ ++.. -.+++.|...++ |.+..||.-| |.|+
T Consensus 138 rep~VRiqAv~aLsrlQ----~d~-------~dee--~~v~n~l~~liqnDpS~EVRRaa---LsnI 188 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQ----GDP-------KDEE--CPVVNLLKDLIQNDPSDEVRRAA---LSNI 188 (892)
T ss_pred cCchHHHHHHHHHHHHh----cCC-------CCCc--ccHHHHHHHHHhcCCcHHHHHHH---HHhh
Confidence 88 49999999999882 111 1110 136677777774 6789999854 4444
No 142
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.72 E-value=37 Score=39.01 Aligned_cols=181 Identities=18% Similarity=0.132 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
....++..++.++..++.+|+.-|+++...-.... .....+.+..+++..-.....++ .+..-|+++|+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~----------~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~ 175 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS----------EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQ 175 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT------------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc----------cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Confidence 34555566677788999999999988875421110 01112455666554333233222 57789999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-----c--cCCccchhhHHHHHHhhhccccc-cccCCCchhHHHHH
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-----T--TGNVKVQWNVCRALSNLFLNETI-NLEDMDWAPSVFSI 990 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-----~--~~n~KVRWNAc~ALGnl~~n~~i-~~~~~~wa~~v~~~ 990 (1127)
+|++.=.+.. .-|-++.++.|.+.+ . ..++....+++..+=-+--++.+ ..... ..+++.
T Consensus 176 ~LL~~~~~R~---------~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~---~~~i~~ 243 (312)
T PF03224_consen 176 NLLRSKEYRQ---------VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK---KYLIPL 243 (312)
T ss_dssp HHHTSHHHHH---------HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT---TSHHHH
T ss_pred HHhCcchhHH---------HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc---cchHHH
Confidence 9984433322 123466777777777 2 24578899999988666433333 21111 119999
Q ss_pred HHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCC
Q 035871 991 LLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADH 1042 (1127)
Q Consensus 991 Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~ 1042 (1127)
|+.+++++.--||=.=+-++|.+.-+...-+.-...|-..+...++++....
T Consensus 244 L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 244 LADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 9999999999998777777776443322222224456777888888886443
No 143
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.69 E-value=38 Score=44.40 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=69.0
Q ss_pred CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHH-hhccCCccchhhHHHHHHhhhccccccccCCCc
Q 035871 905 DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVS-CVTTGNVKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 905 D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk-~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
++.+-+-.|.|++|+|..++..+.. . ...+|.++...+- ..++.-...|-.||+-+|....- . ..++.-
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~---~----~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~-d--f~d~~~ 499 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSP---Y----KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI-D--FKDPNN 499 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCc---h----HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc-c--CCChHH
Confidence 3446778999999999988775431 1 1235666544433 34666688899999999887521 1 123334
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 984 APSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
...++..-.+++.+++..-||+.||-||.
T Consensus 500 l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 500 LSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred HHHHHHHHHHHhccCCcCchhhHHHHHHH
Confidence 56778888888988899999999999996
No 144
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=68.64 E-value=31 Score=33.15 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=61.5
Q ss_pred HHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccc
Q 035871 898 SALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETI 976 (1127)
Q Consensus 898 ~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i 976 (1127)
.|+....|.. .||++|.+-|+++.+-=. ......+.++..++..+++.+..|=-||..+|+.+..-.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~----------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-- 74 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS----------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-- 74 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC----------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC--
Confidence 3444456666 799999999999963222 011236888999999999999999999999999887431
Q ss_pred cccCCCchhHHHHHHHHHHhcCC
Q 035871 977 NLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 977 ~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
-..|++.|+..-.+.+
T Consensus 75 -------p~~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 75 -------PDEVLPILLDEYADPS 90 (92)
T ss_pred -------hHHHHHHHHHHHhCcc
Confidence 2458999998876543
No 145
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=66.14 E-value=78 Score=41.44 Aligned_cols=143 Identities=24% Similarity=0.287 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhh
Q 035871 393 VRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEY 472 (1127)
Q Consensus 393 VR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~ 472 (1127)
|-..-...|..+++.+|+.-+.-=..+.|- ...+++..-.|| -++.....+++. ++|.+..
T Consensus 546 vl~llmE~Ls~vv~~dpef~as~~skI~P~---------~i~lF~k~s~DP------~V~~~~qd~f~e----l~q~~~~ 606 (1005)
T KOG2274|consen 546 VLVLLMEALSSVVKLDPEFAASMESKICPL---------TINLFLKYSEDP------QVASLAQDLFEE----LLQIAAN 606 (1005)
T ss_pred HHHHHHHHHHHHhccChhhhhhhhcchhHH---------HHHHHHHhcCCc------hHHHHHHHHHHH----HHHHHHh
Confidence 334444555566777776433322333332 245666667777 233444444444 3443322
Q ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhh
Q 035871 473 KESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETH---DRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEE 549 (1127)
Q Consensus 473 ~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~---~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~ 549 (1127)
.|.|..-+--+|+..|+.+.+ +....-.+-.+..+|.+||= .|...++..+.|-+..
T Consensus 607 ---------------~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~-----pL~~~l~~~~FpaVak 666 (1005)
T KOG2274|consen 607 ---------------YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS-----PLPNLLICYAFPAVAK 666 (1005)
T ss_pred ---------------hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC-----CccHHHHHHHhHHhHh
Confidence 267888888899999999772 33555677888999999984 4555555555554443
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhcC
Q 035871 550 GFPLKTDQTGLLVAAISCLTAALSTS 575 (1127)
Q Consensus 550 ~~~~~~d~~al~VaaL~cL~avls~~ 575 (1127)
... ++|..+.++.+-.||.+.++..
T Consensus 667 ~tl-HsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 667 ITL-HSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred hee-ecCChHHHHhHHHHHHHHHhcC
Confidence 332 3333467889999999999864
No 146
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=65.68 E-value=1.3e+02 Score=39.48 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=87.8
Q ss_pred hhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHH
Q 035871 601 GVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVV 680 (1127)
Q Consensus 601 ~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~ 680 (1127)
+.+..++.....|.+..+=.-|+|+|..+++.-+....+|-..+...+++.+++-- + ...
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk-------------------~-~l~ 353 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKK-------------------S-ELR 353 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhcc-------------------H-HHH
Confidence 44555555666788888999999999999988877777777766666666654311 1 122
Q ss_pred HHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHH
Q 035871 681 TAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMP 760 (1127)
Q Consensus 681 l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp 760 (1127)
..+.+.+|.++. + +. -..|++.++
T Consensus 354 d~l~~~~d~~~n-------s----------------------------~~--------------------l~~~~~~I~- 377 (815)
T KOG1820|consen 354 DALLKALDAILN-------S----------------------------TP--------------------LSKMSEAIL- 377 (815)
T ss_pred HHHHHHHHHHHh-------c----------------------------cc--------------------HHHHHHHHH-
Confidence 222333333211 0 00 012333222
Q ss_pred HHHccCChhHHHHH----HHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 761 LILQHISSMVRTAA----VTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 761 ~~l~d~~~~VRaaA----c~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
..+.+.+|.+|.-. -+|+..+++. ..++.....++..+ ....+|.+..||-||.+++|.+.
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~---~~~~~t~~~l~p~~-~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPK---TVEKETVKTLVPHL-IKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCc---CcchhhHHHHhHHH-hhhccCCcHHHHHHHHHHHHHHH
Confidence 45677777776664 3455566631 23344455566544 36679999999999999998773
No 147
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.60 E-value=13 Score=49.09 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=67.5
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHHHHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~a 843 (1127)
.++|+++.+|-=||+.+ -.++.+-=+.-...++..+.+.++|-||+-+.=++|.+. +||.+- +...+-
T Consensus 934 ~sdp~Lq~AAtLaL~kl-----M~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnli------e~~T~~ 1002 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKL-----MCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI------EPWTEH 1002 (1251)
T ss_pred CCCHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccccc------chhhHH
Confidence 44699999999999983 111111111112223334456899999999999999995 888884 467788
Q ss_pred HHHhcCCCCcchhchHHHHHHhhh
Q 035871 844 VEINTHDPLVSVRITASWALANIC 867 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~ 867 (1127)
+...++|++..||-+|---|.++-
T Consensus 1003 Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 1003 LYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHH
Confidence 889999999999999998888764
No 148
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=62.45 E-value=50 Score=46.68 Aligned_cols=134 Identities=9% Similarity=0.164 Sum_probs=86.0
Q ss_pred chhhhhhhHHHHHhhhhheeEEcCccHHHHHHHHHHHHHHHHhhhc----ccc-------------cccchhhHH-H-HH
Q 035871 83 TLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSIINFFLVKAA----TKS-------------SATRFKPVM-Q-CL 143 (1127)
Q Consensus 83 ~~~~~~~c~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~-~-~~ 143 (1127)
..+=+++.+.+-+++...--.++.+.|..+++ ++|--.|...- .+. .....+.|+ + |.
T Consensus 1361 lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~---~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~ 1437 (1780)
T PLN03076 1361 PEIRKSALQVLFDTLRNHGHLFSLPLWERVFE---SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCT 1437 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH---HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHH
Confidence 33445566777888888888888888887665 22222222110 000 011233454 5 44
Q ss_pred HHHHHhhhcccCCCCcchhhHHHHhhhhhhccccchhhccccccccccccchhccccCCCCCHHHHHHHHHHHHHHHHhh
Q 035871 144 ETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCLYNASATQRSTAESGKRLHRYSSLWEVQALSITMLGEAFSR 223 (1127)
Q Consensus 144 ~~l~~~~~~~~~~~~~~e~~~lv~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~a~~~l~~~~~r 223 (1127)
++|+.++..|..-|..-.. .|=+||-.+..|-.++ .--+-+...+||..++..
T Consensus 1438 ~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~--------------------------n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1438 LALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRP--------------------------HQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCc--------------------------hHHHHHHHHHHHHHHHHH
Confidence 5999999998866643322 4444444444443321 113578899999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHh
Q 035871 224 AGSSLPVDIWQSTIEVLRKVIDV 246 (1127)
Q Consensus 224 ~~~~~~~~~~~~~~e~~~~v~d~ 246 (1127)
.|..|+++.|.-+++.|+++++.
T Consensus 1491 ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1491 AGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred hhccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999884
No 149
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.64 E-value=24 Score=44.99 Aligned_cols=55 Identities=20% Similarity=0.365 Sum_probs=48.5
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
..|+.||++..|=|-.| .++++.|..+++...|++..+..||-||-.|++.+++|
T Consensus 110 HPNEyiRG~TLRFLckL---------------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 110 HPNEYIRGSTLRFLCKL---------------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred CchHhhcchhhhhhhhc---------------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 46778998777777666 45678999999999999999999999999999999998
No 150
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=57.96 E-value=3.6e+02 Score=31.37 Aligned_cols=87 Identities=21% Similarity=0.119 Sum_probs=57.2
Q ss_pred HHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCC
Q 035871 771 RTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHD 850 (1127)
Q Consensus 771 RaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D 850 (1127)
|...++.|..+.... +. ..++..++--+.++.|..+..++..|+|.+..+- +...-.++++.+.+.+.|
T Consensus 4 r~~~~~~L~~l~~~~---~s----~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 4 RVLHASMLSSLPSSS---LS----SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHhCCCcc---hH----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcC
Confidence 455566666655411 22 2333334334467889999999999999986433 122235778888899999
Q ss_pred CCcchhchHHHHHHhhhh
Q 035871 851 PLVSVRITASWALANICD 868 (1127)
Q Consensus 851 ~~~~VRikAAWALGNL~d 868 (1127)
+...||--=.-++|++.-
T Consensus 73 kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 73 KKPPVRRAWLLCLGEALW 90 (339)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999988666656666653
No 151
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.71 E-value=34 Score=39.81 Aligned_cols=67 Identities=25% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV 830 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L 830 (1127)
-..+.+.+|.||.+|.+-+.+++...|..+.......+-. +..+.+|.++ -.-|++||+++..-+.+
T Consensus 9 v~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~--l~qL~~~~~~--~~~a~~alVnlsq~~~l 75 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKD--LTQLLKDLDP--AEPAATALVNLSQKEEL 75 (353)
T ss_pred HHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHH--HHHHccCccc--ccHHHHHHHHHHhhHHH
Confidence 3567788999999999999988777666666555444322 3477788887 45678999999643333
No 152
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.06 E-value=4.6e+02 Score=31.43 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=46.5
Q ss_pred ccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccC--CchHHHHHH
Q 035871 957 VKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYG--KSFSDVVQG 1030 (1127)
Q Consensus 957 ~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG--~~~~~V~~~ 1030 (1127)
..|+-|||.++-|+.....- ...+|...=++.|+..-+ ..|-.+|--|-.||+ |.| .|....|.+
T Consensus 388 a~vQrnac~~IRNiv~rs~~--~~~~~l~~GiE~Li~~A~-~~h~tce~~akaALR------DLGc~v~lre~wtg 454 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAE--NRTILLANGIEKLIRTAK-ANHETCEAAAKAALR------DLGCDVYLREEWTG 454 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhh--ccchHHhccHHHHHHHHH-hcCccHHHHHHHHHH------hcCcchhhHHHhcc
Confidence 45999999999999643211 134566666788887775 477789999999998 666 345566654
No 153
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=53.25 E-value=24 Score=46.08 Aligned_cols=123 Identities=22% Similarity=0.343 Sum_probs=86.0
Q ss_pred cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc--CCchhhhhHHHHHhhhhhccccCCCC
Q 035871 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK--DGDKIKSNAVRGLGNLSRFVKYTSSS 930 (1127)
Q Consensus 853 ~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~--D~DKVRsnAvRALGnLl~~l~~~~~~ 930 (1127)
+.||.-+--.|||||=+ + +.+-...+..|++- .+ |.-.||.|-|-|+|.+.-
T Consensus 945 ~~vra~~vvTlakmcLa--h------------~~LaKr~~P~lvke----Le~~~~~aiRnNiV~am~D~C~-------- 998 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLA--H------------DRLAKRLMPMLVKE----LEYNTAHAIRNNIVLAMGDICS-------- 998 (1529)
T ss_pred hHHHHHHHHHHHHHHhh--h------------hHHHHHHHHHHHHH----HHhhhHHHHhcceeeeehhhHH--------
Confidence 35677777788888843 1 12222233333332 22 222599999999998851
Q ss_pred CCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHH
Q 035871 931 HPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAA 1010 (1127)
Q Consensus 931 ~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~A 1010 (1127)
.-..-.++.|+.+.++|+|.++-||--+-.-|.++++.+.+ .|...+|=..+..+.| .|-|||--|---
T Consensus 999 -----~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~v-----Kw~G~Lf~Rf~l~l~D-~~edIr~~a~f~ 1067 (1529)
T KOG0413|consen 999 -----SYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIV-----KWNGELFIRFMLALLD-ANEDIRNDAKFY 1067 (1529)
T ss_pred -----HHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhh-----hcchhhHHHHHHHHcc-cCHHHHHHHHHH
Confidence 01234689999999999999999999999999999987644 5888888776666654 888999877554
Q ss_pred hc
Q 035871 1011 LA 1012 (1127)
Q Consensus 1011 L~ 1012 (1127)
++
T Consensus 1068 ~~ 1069 (1529)
T KOG0413|consen 1068 IS 1069 (1529)
T ss_pred HH
Confidence 44
No 154
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.89 E-value=4.9e+02 Score=33.25 Aligned_cols=75 Identities=21% Similarity=0.190 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IK 910 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VR 910 (1127)
+...||.-++.-++..++-++.+||.+..--|+-+.|... ++.+.+-..|++...+..-|.++ ||
T Consensus 84 eg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--------------eIDe~l~N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 84 EGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR--------------EIDEVLANGLLEKLSERLFDREKAVR 149 (885)
T ss_pred hhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3466888888999999999999999999999998888753 23333334445555555668885 99
Q ss_pred hhHHHHHhhh
Q 035871 911 SNAVRGLGNL 920 (1127)
Q Consensus 911 snAvRALGnL 920 (1127)
..||.+|.++
T Consensus 150 ~eAv~~L~~~ 159 (885)
T COG5218 150 REAVKVLCYY 159 (885)
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 155
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=51.68 E-value=53 Score=42.34 Aligned_cols=176 Identities=18% Similarity=0.107 Sum_probs=109.1
Q ss_pred HHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCC
Q 035871 772 TAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDP 851 (1127)
Q Consensus 772 aaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~ 851 (1127)
..++..|.|+..+.-......++ .++..|+ .+++.++..+...+.+.|-.++.|+.-+ +.+.-..+++.|.+.+..+
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~-~iV~~Lv-~~Ldr~n~ellil~v~fLkkLSi~~ENK-~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNK-GIVSLLV-KCLDRENEELLILAVTFLKKLSIFKENK-DEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhc-CCHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHcCCHHHHHHHhcCC
Confidence 36677788877665444433333 3444444 6677788999999999999998887743 3444456788888888888
Q ss_pred CcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCC
Q 035871 852 LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSH 931 (1127)
Q Consensus 852 ~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~ 931 (1127)
+..++..|-+.|.|++---..+.. .++...+.+|++ ..+| ++.+..+...|-||.. .+. .+
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~----------mV~~GlIPkLv~----LL~d-~~~~~val~iLy~LS~---dd~-~r 404 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQ----------MVSLGLIPKLVE----LLKD-PNFREVALKILYNLSM---DDE-AR 404 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHH----------HHHCCCcHHHHH----HhCC-CchHHHHHHHHHHhcc---CHh-hH
Confidence 888999999999999853111100 111112233332 2333 5677778877777752 111 01
Q ss_pred CCCCCChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccc
Q 035871 932 PASLGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 932 ~~~~g~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~ 974 (1127)
+.+. ...+|+.|++.+.. ++..|.-++...+-|+-.|+
T Consensus 405 ~~f~-----~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 405 SMFA-----YTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHh-----hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 1111 12467888887644 56777777767777765443
No 156
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=51.59 E-value=95 Score=33.34 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccc--------------cc-cC---CCch--hHHHHHHHHHHhcC
Q 035871 939 RWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETI--------------NL-ED---MDWA--PSVFSILLLLLRDS 998 (1127)
Q Consensus 939 ~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i--------------~~-~~---~~wa--~~v~~~Ll~ll~~~ 998 (1127)
...++++..+++..-.+--|||+-|+.+|..+..+... +. .. ..|. ...|+.|+.++.-
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~- 81 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL- 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhcc-
Confidence 34677788888887778889999999999999955422 11 11 1254 5689999988843
Q ss_pred CChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHH
Q 035871 999 SNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
+ -.|...-..|.+ ..|.-...++++--.||-
T Consensus 82 ~--~y~~~ll~Glv~-----S~G~~tesl~~~s~~AL~ 112 (193)
T PF12612_consen 82 P--EYRYSLLSGLVV-----SAGGLTESLVRASSAALL 112 (193)
T ss_pred H--HHHHHHHhHHHh-----cCCCCchhHHHHHHHHHH
Confidence 3 356665555543 244444456655555553
No 157
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=51.34 E-value=31 Score=44.94 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=75.6
Q ss_pred HHhhHHHHHcc---CChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC---HhHHHHHHHHHhhhhccc
Q 035871 755 IEKHMPLILQH---ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV---ASVRSAACRAIGVISCFP 828 (1127)
Q Consensus 755 ie~~Lp~~l~d---~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~---~~VRaAA~RALGvlv~~p 828 (1127)
+.+++|-++|. ++..||-++.+++.....+. ..|-.++-.++++. ++.+..|.+ -.||-.|...||.+.-+.
T Consensus 907 ~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~-lLsls~~~~n~~~~VR~~ALqcL~aL~~~~ 984 (1030)
T KOG1967|consen 907 FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPY-LLSLSSDNDNNMMVVREDALQCLNALTRRL 984 (1030)
T ss_pred hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccchHHHhHHHHH-HHhcCCCCCcchhHHHHHHHHHHHHHhccC
Confidence 34566666664 46789999999988754332 33445666677774 457777765 579999999999997522
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCcchhchHHHH
Q 035871 829 QVSQSAEIIDKFIHAVEINTHDPLVSVRITASWA 862 (1127)
Q Consensus 829 ~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWA 862 (1127)
-.+.=-.|..+++.+|++.++|+--.||..|+-+
T Consensus 985 P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 985 PTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred CCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2223345677899999999999999999888743
No 158
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.96 E-value=40 Score=39.28 Aligned_cols=105 Identities=22% Similarity=0.164 Sum_probs=65.8
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhh
Q 035871 842 HAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLS 921 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl 921 (1127)
..+..-+.++++.||.-|.--|-+++.. .. ..+.. -+.. +++....+.+|.+. ..-|++||+|+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~--~~~~~-------~~~~----~lk~l~qL~~~~~~-~~~a~~alVnls 70 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GL--QSLSK-------YSEA----LLKDLTQLLKDLDP-AEPAATALVNLS 70 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-ch--hhhcc-------chhh----hHHHHHHHccCccc-ccHHHHHHHHHH
Confidence 3455667999999999999988888865 11 11111 1112 33333445677777 778999999996
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh----hHHHHHHhhhcccc
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW----NVCRALSNLFLNET 975 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW----NAc~ALGnl~~n~~ 975 (1127)
++..+.+++++.|++.+-+.-.+-.| =.|..|.|+-+.++
T Consensus 71 --------------q~~~l~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 71 --------------QKEELRKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence 44456677777777766432222222 35777777766553
No 159
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.52 E-value=84 Score=36.72 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=64.4
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHH---HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE---FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~---~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.-+.+..+.|-.+||-|++.| |..+...-.. .++..|+ .-..+++..||..|-+||--+|.+-+ +
T Consensus 136 kslKNlRS~VsraA~~t~~di----fs~ln~~i~~~ld~lv~~Ll-~ka~~dnrFvreda~kAL~aMV~~vt----p--- 203 (334)
T KOG2933|consen 136 KSLKNLRSAVSRAACMTLADI----FSSLNNSIDQELDDLVTQLL-HKASQDNRFVREDAEKALVAMVNHVT----P--- 203 (334)
T ss_pred HHhcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-hhhcccchHHHHHHHHHHHHHHhccC----h---
Confidence 445566789999999999875 6666553222 3444343 33456788999999999988874222 1
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALAN 865 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGN 865 (1127)
..+...|+..+...+..||.+|+=-+.|
T Consensus 204 ~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 204 QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 4666777777899999999988844443
No 160
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=47.33 E-value=26 Score=27.72 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=27.4
Q ss_pred hHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHH
Q 035871 962 NVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIR 1004 (1127)
Q Consensus 962 NAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVR 1004 (1127)
.||+|||-++... ..+.+++.|...+.+..++++|
T Consensus 1 gA~lgLGl~~aGs--------~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGS--------GNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT----------HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCC--------CCHHHHHHHHHHHHhccccccC
Confidence 4899999988542 4467999999999998888764
No 161
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=47.10 E-value=3e+02 Score=37.84 Aligned_cols=136 Identities=22% Similarity=0.231 Sum_probs=87.4
Q ss_pred hHHHHH---ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHH-HHHHHhhhhcccccccc
Q 035871 758 HMPLIL---QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSA-ACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 758 ~Lp~~l---~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaA-A~RALGvlv~~p~L~~d 833 (1127)
++|.++ ....+.+|.+|.+|++.+ |..-..+.-..|+..++ -+++|-+..||-. |...++.+.. .-.+..
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~----~k~~~~e~m~~v~~~~~-~ll~~~~~~~~r~~a~e~~~~l~~-~l~~~l 890 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTM----FKSATRETMATVINGFL-PLLGDLDKFVRRQGADELIELLDA-VLMVGL 890 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh-hhccchhhHhhhhhHHHHHHHHHH-hhcccc
Confidence 455444 466789999999999984 44555677777887654 6678866666554 4455555531 112234
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHH------HHHHHHhhcc
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMAS------LTESALNLTK 904 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~------L~e~aL~a~~ 904 (1127)
..|.--.+..|+..+.|.+..||.-|.-+++.+--.+..... ..+ .+.+|.+++.. .+|.++...+
T Consensus 891 ~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g--~~~---p~gls~eLl~~ke~erkFLeqlldpsk 962 (1549)
T KOG0392|consen 891 VPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAG--IPD---PTGLSKELLASKEEERKFLEQLLDPSK 962 (1549)
T ss_pred cccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccC--CCC---CccccHHHHHhHHHHHHHHHHhcCccc
Confidence 555566788999999999999999999888877655433221 111 23577776643 4565554444
No 162
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=47.03 E-value=6.3e+02 Score=30.99 Aligned_cols=188 Identities=13% Similarity=0.172 Sum_probs=103.8
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHH
Q 035871 815 SAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMAS 894 (1127)
Q Consensus 815 aAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~ 894 (1127)
.+....+..++.|..+-.+. +..++..|.....=. +....+--.+-||+.+= .....+..
T Consensus 195 ~~~L~vldaii~y~~iP~~s--l~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~----------------~g~~~i~~ 254 (464)
T PF11864_consen 195 EACLSVLDAIITYGDIPSES--LSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSH----------------LGHSAIRT 254 (464)
T ss_pred HHHHHHHHHHHHcCcCChHH--HHHHHHHHhhHhccc--ccchhHHHHHHHHHcCc----------------cHHHHHHH
Confidence 45567777788888887654 456666666542211 33433334566666421 11223455
Q ss_pred HHHHHHhhc---cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 895 LTESALNLT---KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 895 L~e~aL~a~---~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
|++.+..-. .++..+-..||+-+|.++.-...+... .+... ..-+++.|...++.++..|--.....+-+++
T Consensus 255 L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~-~l~~~----~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 255 LCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP-SLPFS----PSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc-eeccc----HHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 555431001 122245568999999987555322211 01111 1247888999998888888888888877777
Q ss_pred c-cccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHh
Q 035871 972 L-NETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 972 ~-n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
. .-.-.+...+|. .+++.+..++....++...-+..... +.....|..++..+|.+
T Consensus 330 ~~~~~~~l~~~~W~-~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~ie~L 386 (464)
T PF11864_consen 330 DGKYGRELSEEDWD-IILDIIEEIFDKIQPFDSWYSNSSSL----------DQLSSNLHSLLSSIESL 386 (464)
T ss_pred hHhhhhhhcccCch-HHHHHHHHHHhhccccccccccccch----------HHHHHHHHHHHHHHHHH
Confidence 3 221124567886 46666666555444442222111000 33456777888888877
No 163
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=45.84 E-value=3.7e+02 Score=37.69 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhccCCccchhhHHHHHHhhhc-cccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLFL-NETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 942 E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~-n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
..+++.|++-|+.-...|--|||-+|-|+-. ++ ..+.+-|..-+++.|.++| +.+|--+=+.+|.||.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p--~DQq~LwD~gAv~mLrnLI-hSKhkMIa~GSaaALr 597 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP--EDQQMLWDDGAVPMLRNLI-HSKHKMIAMGSAAALR 597 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH--HHHHHHHhcccHHHHHHHH-hhhhhhhhhhHHHHHH
Confidence 4467889999999999999999999999863 33 2235569999999999999 5688888888888885
No 164
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=45.26 E-value=6.7e+02 Score=30.81 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=74.1
Q ss_pred CccchhhhhhcCCChhHHHHHHHHHHHHhcCCch---hhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhccc
Q 035871 431 FEATLMTCLLFDPCLKARMASASTLAAMLDGPST---VFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRET 507 (1127)
Q Consensus 431 ~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~---~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~ 507 (1127)
...+++.++-......+....+.++..||..-.. +|...+. .++..|.||- ..|.++
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~----~~~~~~~~fl---------------~lL~~~- 113 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDAL----LKKKTWEPFF---------------NLLNRQ- 113 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhh----ccccchHHHH---------------HHHcCC-
Confidence 3456667676778889999999999999887543 3332221 1233444443 344554
Q ss_pred chHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCC
Q 035871 508 HDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPA 577 (1127)
Q Consensus 508 ~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~ 577 (1127)
+-.+.-..+++++.|++..| .+.+...++.+.+-+...+... +++...-.++.||..++...+-
T Consensus 114 d~~i~~~a~~iLt~l~~~~~-~~~~~~~l~~~~~~l~~~l~~~-----~~~~~~~~~v~~L~~LL~~~~~ 177 (429)
T cd00256 114 DQFIVHMSFSILAKLACFGL-AKMEGSDLDYYFNWLKEQLNNI-----TNNDYVQTAARCLQMLLRVDEY 177 (429)
T ss_pred chhHHHHHHHHHHHHHhcCc-cccchhHHHHHHHHHHHHhhcc-----CCcchHHHHHHHHHHHhCCchH
Confidence 55688899999999998777 4455554554544444433322 1222444667899888775543
No 165
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=44.70 E-value=49 Score=34.72 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhccCCccchhhHHHHHHhhhcc--cccc-ccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC--
Q 035871 941 LERIVQALVSCVTTGNVKVQWNVCRALSNLFLN--ETIN-LEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS-- 1015 (1127)
Q Consensus 941 ~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n--~~i~-~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~-- 1015 (1127)
..+.+..+.+.+++++++.||-+++-++-...+ ..++ .....| +..|+..|++.....++-.|..+|...-
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W----~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQW----LRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456666677778899999999999999999876 3444 233345 5677888887788888888888885322
Q ss_pred -------cccccCCchHHHHHHHHHHHH
Q 035871 1016 -------SVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 1016 -------~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
.|+.--...+.++.+++..++
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~ 126 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQ 126 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHh
Confidence 333333344555555555444
No 166
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.06 E-value=2.2e+02 Score=37.51 Aligned_cols=200 Identities=12% Similarity=0.132 Sum_probs=106.0
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhhcccccccchHH-HHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEI-IDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFA 878 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~f-v~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~ 878 (1127)
||.++-...|+.-.-.|..-|-.+..+..-..=..| ++.++++|...+. ..|..+-..|+.||.+|||.+-....-+
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v- 250 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV- 250 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee-
Confidence 555554455777777777666555332221111234 5677788887765 4467899999999999999875433211
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCcc
Q 035871 879 FKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVK 958 (1127)
Q Consensus 879 ~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~K 958 (1127)
. ++..-+-++.+|... .--+|.-.+.-||-+|.|-=+. .+ +--.++-+.+..+..=.--
T Consensus 251 V----~~~aIPvl~~kL~~I------eyiDvAEQ~LqALE~iSR~H~~-------Ai----L~AG~l~a~LsylDFFSi~ 309 (1051)
T KOG0168|consen 251 V----DEHAIPVLLEKLLTI------EYIDVAEQSLQALEKISRRHPK-------AI----LQAGALSAVLSYLDFFSIH 309 (1051)
T ss_pred e----cccchHHHHHhhhhh------hhhHHHHHHHHHHHHHHhhccH-------HH----HhcccHHHHHHHHHHHHHH
Confidence 1 112223345555221 1123566666666555321110 00 0011122222233333344
Q ss_pred chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc-CCCcccccCCchH
Q 035871 959 VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA-VPSSVSDYGKSFS 1025 (1127)
Q Consensus 959 VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~-~p~~R~~yG~~~~ 1025 (1127)
++.+|---..|+.++ +...+...--.++|.|+.+|+. ..-|+=-+++-.|. ......+++..+.
T Consensus 310 aQR~AlaiaaN~Cks--i~sd~f~~v~ealPlL~~lLs~-~D~k~ies~~ic~~ri~d~f~h~~~kLd 374 (1051)
T KOG0168|consen 310 AQRVALAIAANCCKS--IRSDEFHFVMEALPLLTPLLSY-QDKKPIESVCICLTRIADGFQHGPDKLD 374 (1051)
T ss_pred HHHHHHHHHHHHHhc--CCCccchHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccChHHHH
Confidence 566665555666654 2222334455678899999954 55677777777764 3334455554333
No 167
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.23 E-value=3.1e+02 Score=35.94 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhh
Q 035871 560 LLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSS 639 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~ 639 (1127)
+|-.+...|+++++..|+ |+++.+.- .|.-.+-|-.++ .++..|+|=|++-.|.++++..|.+-+
T Consensus 138 VR~~aIqLlsalls~r~~--e~q~~ll~--------~P~gIS~lmdlL----~DsrE~IRNe~iLlL~eL~k~n~~IQK- 202 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSCRPT--ELQDALLV--------SPMGISKLMDLL----RDSREPIRNEAILLLSELVKDNSSIQK- 202 (970)
T ss_pred hhhHHHHHHHHHHhcCCH--HHHHHHHH--------CchhHHHHHHHH----hhhhhhhchhHHHHHHHHHccCchHHH-
Confidence 555777788888887765 34443321 111111122222 245579999999999999999886542
Q ss_pred hHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHH
Q 035871 640 YWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLR 692 (1127)
Q Consensus 640 ~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lr 692 (1127)
..-.-+++.+++.+...|. |-+-++.-+.|+ .+|-.+||
T Consensus 203 -lVAFENaFerLfsIIeeEG---------g~dGgIVveDCL----~ll~NLLK 241 (970)
T KOG0946|consen 203 -LVAFENAFERLFSIIEEEG---------GLDGGIVVEDCL----ILLNNLLK 241 (970)
T ss_pred -HHHHHHHHHHHHHHHHhcC---------CCCCcchHHHHH----HHHHHHHh
Confidence 1112355555555544332 223334445564 66666666
No 168
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=42.32 E-value=67 Score=34.42 Aligned_cols=63 Identities=21% Similarity=0.130 Sum_probs=50.3
Q ss_pred HhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 802 IDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 802 ll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
|+.++-+++..||.+|.+.|+.+.-..=. .+ ..+++.|+....||+..||.+|--.|-.+.+.
T Consensus 13 Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 13 ILELCLSSDDSVRLAALQVLELILRQGLV--NP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcCCC--Ch---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 35678899999999999999998521111 23 56889999889999999999999888888763
No 169
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=42.09 E-value=2.8e+02 Score=40.67 Aligned_cols=233 Identities=14% Similarity=0.159 Sum_probs=142.1
Q ss_pred hhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc
Q 035871 750 QWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ 829 (1127)
Q Consensus 750 ~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~ 829 (1127)
.-..+++..+--+.-|.++.+|.....++. +.| .+...|..++. +.+.+++|+.-.++-+|...+|.+..
T Consensus 525 ~v~~vl~~ll~~aia~~~~~i~~~v~~~l~----~~~--~~~laQ~~~lr-~~~~al~~~~l~~~~~~~~~ig~l~~--- 594 (2341)
T KOG0891|consen 525 VVKEVLSALLTVAIADTDPDIRIRVLSSLN----ERF--DAQLAQPDLLR-LLFIALHDENFAIQELATVIIGRLSS--- 594 (2341)
T ss_pred HHHHHHHHHHHHhccCCCcchhhhHHhhhc----cch--hhhhcCchhHH-HHHHHhhhhhhhhHHhHHhhcccccc---
Confidence 346777777777778889999988887776 233 44555667766 45688899999999999999997742
Q ss_pred cccchHHHHHHH-HHHHHhcCCCC--cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC
Q 035871 830 VSQSAEIIDKFI-HAVEINTHDPL--VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906 (1127)
Q Consensus 830 L~~d~~fv~~ai-~aLl~~l~D~~--~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~ 906 (1127)
.++.|+.... ...+....+-+ -.+|+++==| ..+..++.... ......+..++...+..+.|.
T Consensus 595 --~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a--~~~~~~i~~~~----------~~i~~~v~~~l~~~~~~~~~~ 660 (2341)
T KOG0891|consen 595 --YNPAYVLPSLRKTLLELLTELEFSGMARTKEESA--KLLCELIISSP----------VLISPYVGPILLVLLPKLQDP 660 (2341)
T ss_pred --ccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHH--HHhhHHHHHHH----------HHHHhhcCchHHHHHHHHhcc
Confidence 1233332322 22222222111 1223332211 11111111000 000000111112222223444
Q ss_pred c-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccccCCCch
Q 035871 907 D-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWA 984 (1127)
Q Consensus 907 D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa 984 (1127)
+ .|-.++++.+|.|.+....+. ..+.+..+..+.+.+.+ ++.-=|-+|=.++|++.........+..|.
T Consensus 661 ~s~~~~~~~~~~~eL~~v~g~~~---------~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~ 731 (2341)
T KOG0891|consen 661 SSGVEKAVLETIGELCAVGGEEM---------VKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDY 731 (2341)
T ss_pred chhhHHHHHHHHHHHHHhccchh---------hhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccC
Confidence 4 699999999999986655211 11233344555555544 667778899999999999888877788899
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 985 PSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 985 ~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+.+++.|..-++.+-+--+|..|-..++.-+
T Consensus 732 P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 732 PELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 9999999999999888889999888888443
No 170
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=40.88 E-value=23 Score=29.12 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcchhchH
Q 035871 819 RAIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITA 859 (1127)
Q Consensus 819 RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikA 859 (1127)
|+||.++ ..|.+... ..+.+.+...+.|+++.||-.|
T Consensus 1 k~l~~iv~~dp~ll~~----~~v~~~i~~rl~D~s~~VR~aa 38 (42)
T PF12765_consen 1 KALSSIVEKDPTLLDS----SDVQSAIIRRLSDSSPSVREAA 38 (42)
T ss_pred ChHHHHHhcCccccch----HHHHHHHHHHhcCCChHHHHHH
Confidence 3566665 45555554 3667888888999999999655
No 171
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.73 E-value=41 Score=36.02 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=49.1
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
.||..|++ .+.+++..||..|.+.++.|-..=+.. | ..|++.++ ++..|+++.||..|.+.+..+.
T Consensus 8 ryl~~Il~-----~~~~~~~~vr~~Al~~l~~il~qGLvn-P----~~cvp~lI-AL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 8 RYLKNILE-----LCLSSDDSVRLAALQVLELILRQGLVN-P----KQCVPTLI-ALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHH-----HHhCCCHHHHHHHHHHHHHHHhcCCCC-h----HHHHhHhh-hhhCCCChHHHHHHHHHHHHHH
Confidence 67776554 567889999999999999863321111 2 24677665 8889999999999999998874
No 172
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.45 E-value=1.5e+02 Score=38.08 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=71.4
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHH-------HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccc
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEI-------IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDD 876 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~f-------v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~ 876 (1127)
.+++.+....|-+-..++|++|- .+..|... +.+.++-+.+.+.|.++-+|.||---+..|+|-=..
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~--~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk---- 379 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVE--HFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK---- 379 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHH--HHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc----
Confidence 45677888999999999999972 11223322 456677777889999999999999999999984211
Q ss_pred cCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 877 FAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 877 ~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
.+. .-..+++-+.+...|.. .||.||+.-+..|+
T Consensus 380 ----------~~~-~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 380 ----------TVG-RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred ----------ccc-hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 000 12233333445567777 69999999998886
No 173
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=40.16 E-value=1.3e+02 Score=38.88 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=100.1
Q ss_pred cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccc
Q 035871 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSN 886 (1127)
Q Consensus 807 ~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~ 886 (1127)
+..+...| .|+..|.++.--+.... .+.-...+..|...++..+..+.+.+.+.|-+|+=.- .+..... + ..
T Consensus 260 ~kQeqLlr-v~~~lLlNLAed~~ve~-kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~-~----~g 331 (708)
T PF05804_consen 260 RKQEQLLR-VAFYLLLNLAEDPRVEL-KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMA-E----SG 331 (708)
T ss_pred HHHHHHHH-HHHHHHHHHhcChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH-H----cC
Confidence 44455555 45667777743222111 1112345666777788888999999999999998321 0110000 0 01
Q ss_pred ccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHH
Q 035871 887 ANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRA 966 (1127)
Q Consensus 887 is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~A 966 (1127)
+-+. |.+++. .+++.++-.|.|.|.||. +++- . ........+|+.|+..+.++ +.|-.+...
T Consensus 332 iV~k-L~kLl~------s~~~~l~~~aLrlL~NLS----fd~~---~--R~~mV~~GlIPkLv~LL~d~--~~~~val~i 393 (708)
T PF05804_consen 332 IVEK-LLKLLP------SENEDLVNVALRLLFNLS----FDPE---L--RSQMVSLGLIPKLVELLKDP--NFREVALKI 393 (708)
T ss_pred CHHH-HHHHhc------CCCHHHHHHHHHHHHHhC----cCHH---H--HHHHHHCCCcHHHHHHhCCC--chHHHHHHH
Confidence 1111 333332 356689999999999995 1110 0 00112233567888888765 455567777
Q ss_pred HHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 967 LSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 967 LGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
|.++-.++.....- .. ...++.|.+.+..+++-.|...+.+.+.
T Consensus 394 Ly~LS~dd~~r~~f-~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 394 LYNLSMDDEARSMF-AY-TDCIPQLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred HHHhccCHhhHHHH-hh-cchHHHHHHHHHhCCCccccHHHHHHHH
Confidence 88876654332100 11 2367888888888888778776544443
No 174
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.81 E-value=82 Score=39.54 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHH----HHHHhcCCChHHHHHHHHHhcC
Q 035871 938 SRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSIL----LLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 938 ~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~L----l~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
.++...++.-++..+..+++|||.+.|.-|..+..+- . +-.+.+|+.| ...+- ++.--||+.|..+|.-
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v--~----eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV--R----EIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCY 158 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc--c----hHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 3456677777888888999999999999998887652 1 1123455555 44443 3566799999999983
Q ss_pred CCcccccCCchHHHHHHHHHHHH
Q 035871 1014 PSSVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 1014 p~~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
-. +.-|+.=..++.-|...++
T Consensus 159 ~Q--e~~~neen~~~n~l~~~vq 179 (885)
T COG5218 159 YQ--EMELNEENRIVNLLKDIVQ 179 (885)
T ss_pred HH--hccCChHHHHHHHHHHHHh
Confidence 32 2233333334444444444
No 175
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=39.19 E-value=51 Score=38.46 Aligned_cols=129 Identities=21% Similarity=0.213 Sum_probs=64.1
Q ss_pred hhhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChh------HHHHHHHHHHHHhcCCc
Q 035871 390 SSKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLK------ARMASASTLAAMLDGPS 463 (1127)
Q Consensus 390 ~skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~K------vR~aA~~~LsaLL~gsk 463 (1127)
.-.+|.+|++|+++.+...+-.=..++..++|............+|++.|+. |++. .=.-|+.+++.+|.+..
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~-~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLD-YDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT-------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHH-hhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 4579999999999988764433334566777776543311234568888883 3322 22357778888888742
Q ss_pred ---hhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhccc
Q 035871 464 ---TVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTP 527 (1127)
Q Consensus 464 ---~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TP 527 (1127)
...+.+.+..++.. ..=.+ .|..+=.-|+..+.+..+.++..-+|+-|..-.-..|
T Consensus 130 ~~Ke~al~V~~~~~~~g-e~~vt-------liq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p 188 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSG-EEPVT-------LIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECP 188 (312)
T ss_dssp HHHHHHTT--EE--STT-S--EE-------HHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHcccCCCCCCC-CCccc-------HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCH
Confidence 23333311110100 00000 1222333344555557888898899998888777765
No 176
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=38.85 E-value=1.8e+02 Score=38.39 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=96.1
Q ss_pred HHHHhhHHHHHccCC---hhHHHHHHHHHhccchhHHhhcchhH----HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 753 EMIEKHMPLILQHIS---SMVRTAAVTCFAGITSSVFFSLLKET----QEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~---~~VRaaAc~cLa~Igs~~f~~Lp~~~----q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
..+..+.|.+.++-. -.+|..-..+|+++-+ ..|.+. -..+.+ |++.++.=+|+.||..+.+.+-.+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~----~vP~~vllp~~~~LlP-LLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLT----NVPKQVLLPQFPMLLP-LLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHh----cCCHHhhccchhhHHH-HHHHhcCCCccchhhhHhhhhhHHH
Confidence 334445665555432 3578888888887432 344422 123444 6678888899999999999998875
Q ss_pred -cccccccchHHHHHHHHHHHHhcCCCC---cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh
Q 035871 826 -CFPQVSQSAEIIDKFIHAVEINTHDPL---VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN 901 (1127)
Q Consensus 826 -~~p~L~~d~~fv~~ai~aLl~~l~D~~---~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~ 901 (1127)
..+++-. ..+..+++.++..-.|.+ ..||.-|---|+-|+..+-.+. .. ..-++++..|+.+
T Consensus 938 ~~~~tL~t--~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~----l~-----~fr~~Vl~al~k~--- 1003 (1030)
T KOG1967|consen 938 TESETLQT--EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS----LL-----SFRPLVLRALIKI--- 1003 (1030)
T ss_pred Hhccccch--HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc----cc-----cccHHHHHHhhhc---
Confidence 4444432 346778888887766666 5799999988888886543221 11 1334556555543
Q ss_pred hccCCc-hhhhhHHHHHhhh
Q 035871 902 LTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 902 a~~D~D-KVRsnAvRALGnL 920 (1127)
.+|+. .||..|+|+=|+-
T Consensus 1004 -LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 1004 -LDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred -cCcHHHHHHHHHHHHhhhh
Confidence 46655 5999999987764
No 177
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=38.64 E-value=2e+02 Score=39.30 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=66.2
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHH-HHHhhhhhhhhcccccCCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASW-ALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAW-ALGNL~d~L~~~~~~~~~~~ 881 (1127)
+.+.....++||.+|+|++|.+....+ -+-...+++.++..++|.+..||..+|- .++-++..+.. ...+
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~----~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~-----~l~~ 892 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSAT----RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMV-----GLVP 892 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcc-----cccc
Confidence 466788999999999999999843111 1123456677777888888888766553 33333332221 1121
Q ss_pred CCcccccHHHHHHHHHHHHhh-ccCCchhhhhHHHHHhhhhhccccCC
Q 035871 882 SIDSNANSHLMASLTESALNL-TKDGDKIKSNAVRGLGNLSRFVKYTS 928 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a-~~D~DKVRsnAvRALGnLl~~l~~~~ 928 (1127)
+.+-++..| ++. +++.|-||--|.++...+...++.+.
T Consensus 893 -----~~~Llv~pl----lr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 893 -----YNPLLVVPL----LRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred -----cceeehhhh----hcccccchHHHHHHHHHHHHHHhccccccc
Confidence 112112222 333 44556799999999999887777655
No 178
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=34.22 E-value=6.2e+02 Score=30.44 Aligned_cols=145 Identities=17% Similarity=0.257 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhHh-cccCCCCCCCchH--HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHH----
Q 035871 510 RLLASLFKILMPLIS-CTPYSRMPGELMP--NLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVK---- 582 (1127)
Q Consensus 510 ~vLtqlLKcLa~LVq-~TPY~RL~~~Ll~--~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~---- 582 (1127)
+++..+||.+.-+++ .+...+.-++++. .+...++..+.+...+-. .+...|+.+++.++..+|..-.+.
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~---~v~s~a~~ivs~~I~nePT~~~~l~e~G 151 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGP---SVFSLAINIVSDFIHNEPTSFSILQEAG 151 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccch---HHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence 467788888888888 7777777777765 666667777765554432 244466777888887777543321
Q ss_pred --HHHHHhhh-cCCCCCCC-----------------------cchhHHHHHhhhhcCCC-Cch-HhHHHHH----HHHHH
Q 035871 583 --QMFLEEIS-AGSVEVDK-----------------------RSGVLFTLLQCSERLAS-PAI-CFESLQA----LRAVS 630 (1127)
Q Consensus 583 --~~L~~e~s-sg~~~~~~-----------------------~s~~L~~Ll~~~~~~~~-~~v-RlEAlQv----L~ala 630 (1127)
+.+++.+. .|...... .+..+..++.....+.- ... +-|.... +-.++
T Consensus 152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 11222222 22211110 01112222211110000 011 1133333 44588
Q ss_pred hhChhhhhhhHHHHHHHHHHHHHhhCC
Q 035871 631 HNYPNIMSSYWQQVSTIVFKILKAASP 657 (1127)
Q Consensus 631 ~~yp~l~~~~~~~l~~vl~~~L~~~~~ 657 (1127)
||||.+.....+.+.+++.++......
T Consensus 232 RH~p~Lk~~i~~~ii~~l~~l~~~g~~ 258 (379)
T PF06025_consen 232 RHHPSLKPDIIDAIIKILDRLVELGKD 258 (379)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999888888888877665443
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.24 E-value=1.7e+02 Score=39.27 Aligned_cols=146 Identities=18% Similarity=0.146 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCC-CcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHH
Q 035871 812 SVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDP-LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSH 890 (1127)
Q Consensus 812 ~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~-~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~ 890 (1127)
-=|+-|+..|.+++-==-+++...+-...+.-.+..++|+ .+-.|.-.+--||.|=.---.. .-. .+.+.
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A-------rw~--G~r~~ 642 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA-------RWS--GRRDN 642 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh-------hhc--ccccc
Confidence 4577888888888722222333333345566566677774 6778877777777665321100 000 11122
Q ss_pred HHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCC--CCC-----CC-hhHHHHHHH----HHHHhhccCCc
Q 035871 891 LMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHP--ASL-----GD-SRWLERIVQ----ALVSCVTTGNV 957 (1127)
Q Consensus 891 lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~--~~~-----g~-~~~~E~~i~----aLlk~l~~~n~ 957 (1127)
.-++|+. ...|+- .||..||-|||.++..-++ ++... +.. .+ ..-.|..|. .|+..+.+|.+
T Consensus 643 AhekL~~----~LsD~vpEVRaAAVFALgtfl~~~~d-~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsp 717 (1387)
T KOG1517|consen 643 AHEKLIL----LLSDPVPEVRAAAVFALGTFLSNGSD-NFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSP 717 (1387)
T ss_pred HHHHHHH----HhcCccHHHHHHHHHHHHHHhccccc-ccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccch
Confidence 2344433 235544 8999999999999987544 22100 000 00 112455555 67778889999
Q ss_pred cchhhHHHHHHhhh
Q 035871 958 KVQWNVCRALSNLF 971 (1127)
Q Consensus 958 KVRWNAc~ALGnl~ 971 (1127)
=||--.+.||....
T Consensus 718 lvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 718 LVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888887654
No 180
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.92 E-value=5.5e+02 Score=30.33 Aligned_cols=201 Identities=17% Similarity=0.203 Sum_probs=108.3
Q ss_pred hhHHHHHhhHHHHHccCChhHHHHHH---------HHHh-----ccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHH
Q 035871 750 QWSEMIEKHMPLILQHISSMVRTAAV---------TCFA-----GITSSVFFSLLKETQEFIISSLIDSALHDDVASVRS 815 (1127)
Q Consensus 750 ~W~~iie~~Lp~~l~d~~~~VRaaAc---------~cLa-----~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRa 815 (1127)
.|.- +|+.-|..-+++.+......- .... .+-+-+-..|+++.|.+-.. + ..++.+++..-|.
T Consensus 120 hWLa-ieGvqP~ip~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~LS~Elq~yf~~-I-t~a~~~~~~~~r~ 196 (343)
T cd08050 120 HWLA-IEGVQPLIPENPPPSAIEVQKKESLANAAVKRLKKDEQVLLKPLVRHVLSKELQLYFEE-I-TEALVGSNEEKRR 196 (343)
T ss_pred ccce-ecCccCCCCCCCCchhccccccccccccccccccccCcceeeeccccccCHHHHHHHHH-H-HHHHhCCCHHHHH
Confidence 4644 888888777766543222110 0000 01112233478888887654 3 3455667788888
Q ss_pred HHHHHHhhhhcccccccchHHHHHHH-HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHH
Q 035871 816 AACRAIGVISCFPQVSQSAEIIDKFI-HAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMAS 894 (1127)
Q Consensus 816 AA~RALGvlv~~p~L~~d~~fv~~ai-~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~ 894 (1127)
+|...|-.= |.+..=.-|.-.++ +.+-.++.+ + ..--..|..+..+|..|.. ...++|... +-+.+|..
T Consensus 197 ~aL~sL~tD---~gl~~LlPyf~~fI~~~v~~n~~~-n----l~~L~~lm~~v~ALl~N~~-l~le~Ylh~-Lip~vltc 266 (343)
T cd08050 197 EALQSLRTD---PGLQQLLPYFVRFIAEGVTVNLDQ-N----LALLIYLMRMVRALLDNPN-LHLEPYLHQ-LIPSVLTC 266 (343)
T ss_pred HHHHHhccC---CCchhhhhHHHHHHHHHHHhhhcc-c----HHHHHHHHHHHHHHhcCCC-CchHHhHHH-HHHHHHHH
Confidence 877776432 22221111222222 444333432 1 2223445666667776643 233443331 22223333
Q ss_pred HHHHHHhhc---cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHh
Q 035871 895 LTESALNLT---KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSN 969 (1127)
Q Consensus 895 L~e~aL~a~---~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGn 969 (1127)
++..-+... +|+-.+|-.|++-|+.+.+-..... ..+..+++..|.+.+.+ ...-...-|-+.|+.
T Consensus 267 lv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y---------~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 267 LVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY---------NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred hhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC---------CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 333222221 2333699999999999985544422 23567888899999865 456668999999988
Q ss_pred hhc
Q 035871 970 LFL 972 (1127)
Q Consensus 970 l~~ 972 (1127)
+|.
T Consensus 338 lG~ 340 (343)
T cd08050 338 LGP 340 (343)
T ss_pred hCc
Confidence 874
No 181
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.44 E-value=6e+02 Score=28.97 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=61.8
Q ss_pred hCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhh---hhhhhhccccCCccccc
Q 035871 407 ADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVF---LQVAEYKESIKCGSFMP 483 (1127)
Q Consensus 407 ~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~l---lq~AE~~es~~~~SFTs 483 (1127)
.+...+..+|+.++|-. =.++-|.++.+|.-++.++..|+....... ++ .+
T Consensus 108 ~~~~~i~~~~~liiP~i-------------L~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~------~t------- 161 (282)
T PF10521_consen 108 LDRPWISQHWPLIIPPI-------------LNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR------RT------- 161 (282)
T ss_pred CCcchHHHhhhHHHhhH-------------HHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH------Hc-------
Confidence 35567899999999864 237888999999999999999999854422 21 00
Q ss_pred chHHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHHHHHHhHhccc
Q 035871 484 LSTSYGHIIMQLHNGIIYLIQ-------RETHDRLLASLFKILMPLISCTP 527 (1127)
Q Consensus 484 fS~tLg~~l~eLHr~Ll~aL~-------~E~~~~vLtqlLKcLa~LVq~TP 527 (1127)
.++..+ ..+|..+|- .+.+..++...+.|+-.|+...+
T Consensus 162 ---Gl~~v~---~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~ 206 (282)
T PF10521_consen 162 ---GLFSVF---EDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQE 206 (282)
T ss_pred ---ChHHHH---HHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence 123333 333333333 35667788999999999988765
No 182
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=32.34 E-value=5e+02 Score=34.60 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=89.7
Q ss_pred HHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhc--CCCCcchhchHHHHHHhhhhh-hh
Q 035871 795 EFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINT--HDPLVSVRITASWALANICDS-IR 871 (1127)
Q Consensus 795 ~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l--~D~~~~VRikAAWALGNL~d~-L~ 871 (1127)
..++.. + ...-+.|+.||++|...|-.+..++. +-.+|.... .|.....|.-|.=-|-.+... ..
T Consensus 4 ~~ii~~-L-~~~ls~d~~vr~~AE~~l~qle~~~~----------f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~ 71 (1005)
T KOG2274|consen 4 QAIIEL-L-SGSLSADQNVRSQAETQLKQLELTEG----------FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWS 71 (1005)
T ss_pred HHHHHH-H-HhhcCCChhHHHHHHHHHhccccchH----------HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCC
Confidence 345543 2 34578999999999999988854222 333333322 456667787777555554442 11
Q ss_pred hcccccCCCCCCccc-ccHHHHHHH-HHHHHhhc-cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHH
Q 035871 872 HCIDDFAFKPSIDSN-ANSHLMASL-TESALNLT-KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQAL 948 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~-is~~lL~~L-~e~aL~a~-~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aL 948 (1127)
.+ ++.+.+.. .+.+ ..++ -+..++.. ++|-|+|..+..++.-+.+..=++ .| -..++.+
T Consensus 72 ~~-----~E~fr~~~~~~e~-~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd-----------~W-pElv~~i 133 (1005)
T KOG2274|consen 72 PN-----FEAFRYPLIVSEE-VKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD-----------EW-PELVPFI 133 (1005)
T ss_pred Ch-----HhhccCCCcccHH-HHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch-----------hh-HHHHHHH
Confidence 11 11111111 2222 2222 22223332 566699999999999887443332 24 3488999
Q ss_pred HHhhccCCccchhhHHHHHHhhhcc
Q 035871 949 VSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 949 lk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
++++.++|-.--|+|-..|-.+...
T Consensus 134 ~~~l~~~n~n~i~~am~vL~el~~e 158 (1005)
T KOG2274|consen 134 LKLLSSGNENSIHGAMRVLAELSDE 158 (1005)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999999877644
No 183
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.33 E-value=6.5e+02 Score=28.71 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=55.1
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhHhcccCCC---C-CCCchHHHHHHHHHHHhhcCC-CC-CchhHHHHHHHHHHHHH
Q 035871 498 GIIYLIQRETHDRLLASLFKILMPLISCTPYSR---M-PGELMPNLIISLRARIEEGFP-LK-TDQTGLLVAAISCLTAA 571 (1127)
Q Consensus 498 ~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~R---L-~~~Ll~~vv~~l~~~i~~~~~-~~-~d~~al~VaaL~cL~av 571 (1127)
.++.++.+ .++.+-.+.++||..+++++|-.. | ..|+..-+-+++.+++..--. .+ .+...+..++..|+-.+
T Consensus 123 ~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L 201 (282)
T PF10521_consen 123 PILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSL 201 (282)
T ss_pred hHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHH
Confidence 34555555 588899999999999999999888 5 478888888888887752211 11 22234667888888877
Q ss_pred HhcC
Q 035871 572 LSTS 575 (1127)
Q Consensus 572 ls~~ 575 (1127)
+.+.
T Consensus 202 ~~~~ 205 (282)
T PF10521_consen 202 LKTQ 205 (282)
T ss_pred HHhh
Confidence 6653
No 184
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.09 E-value=1.7e+03 Score=31.73 Aligned_cols=125 Identities=15% Similarity=0.221 Sum_probs=81.1
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCC
Q 035871 498 GIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPA 577 (1127)
Q Consensus 498 ~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~ 577 (1127)
.++.....|+...+.+-++|||+.+|.+-|-=+.. +.|-..+..++.. .. ..+|=||+-.+|-.+-..+.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~----~dvq~~Vh~R~~D----ss--asVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSR----PDVQEAVHGRLND----SS--ASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC----HHHHHHHHHhhcc----ch--hHHHHHHHHHHhhhhhccHH
Confidence 34555667999999999999999999998744433 3444444444432 21 23677888888865543322
Q ss_pred h-hHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhC
Q 035871 578 P-VQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAAS 656 (1127)
Q Consensus 578 ~-~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~ 656 (1127)
. .+..+++-. --.+.++.||--++.+++.++--+|++.. ..++..++++-..
T Consensus 889 ~~~qyY~~i~e----------------------rIlDtgvsVRKRvIKIlrdic~e~pdf~~-----i~~~cakmlrRv~ 941 (1692)
T KOG1020|consen 889 LIFQYYDQIIE----------------------RILDTGVSVRKRVIKILRDICEETPDFSK-----IVDMCAKMLRRVN 941 (1692)
T ss_pred HHHHHHHHHHh----------------------hcCCCchhHHHHHHHHHHHHHHhCCChhh-----HHHHHHHHHHHhc
Confidence 1 111111110 01366789999999999999999998653 5567777777665
Q ss_pred CCC
Q 035871 657 PEV 659 (1127)
Q Consensus 657 ~~~ 659 (1127)
+|.
T Consensus 942 DEE 944 (1692)
T KOG1020|consen 942 DEE 944 (1692)
T ss_pred cch
Confidence 543
No 185
>KOG4835 consensus DNA-binding protein C1D involved in regulation of double-strand break repair [Replication, recombination and repair]
Probab=31.82 E-value=67 Score=33.50 Aligned_cols=78 Identities=22% Similarity=0.071 Sum_probs=59.8
Q ss_pred CChhhHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhcCCCCccchhhhhHHHHHHHHHHhCcCCCCCC
Q 035871 228 LPVDIWQSTIEVLRKVIDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALRLFFVYGLTSSPQF 307 (1127)
Q Consensus 228 ~~~~~~~~~~e~~~~v~d~~a~~~~~~ed~~~~~r~~~s~l~cL~~~l~~~k~~~~d~~~~~~~~lk~f~~yGl~g~~~~ 307 (1127)
+..+.+.+++|.+++..+++..=...+||.- +-+---.++.|| +++.| .|++..+.-..-+|+||.+.|..+.
T Consensus 3 ~~~~~p~~l~e~ln~f~~~l~~l~~~le~~~--s~~e~e~l~sl~--~EqAK---ld~~~~ya~~sl~~~~l~~kG~da~ 75 (144)
T KOG4835|consen 3 SNDPEPESLIEYLNKFLDNLEELKPPLEDME--SISELEELRSLL--LEQAK---LDLTLAYAINSLFWSFLKLKGVDAS 75 (144)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3356678889999988887776556677764 566666778888 56543 5788888899999999999999988
Q ss_pred CCCccc
Q 035871 308 TFPAVG 313 (1127)
Q Consensus 308 ~~p~~~ 313 (1127)
-+| +.
T Consensus 76 dh~-V~ 80 (144)
T KOG4835|consen 76 DHP-VL 80 (144)
T ss_pred cch-HH
Confidence 888 54
No 186
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.01 E-value=1.9e+03 Score=31.99 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=70.4
Q ss_pred ccccccccccccCCCCCC-CCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHH
Q 035871 410 KSFTTQWTILLPTNDVLR-PRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSY 488 (1127)
Q Consensus 410 K~l~gyW~~llPd~~~~~-~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tL 488 (1127)
+.++=+|.-.||-+.... .++...-=+|+.+ .--.|..|+........+..+-+. |+. -..=.+|+..++
T Consensus 589 prllLlWk~~f~rs~ke~ese~~rgdaFtwq~---tl~~~agaL~~m~~~~s~~~~~~~---e~~---~~k~~~p~~~~l 659 (2067)
T KOG1822|consen 589 PRLLLLWKNAFPRSPKELESEESRGDAFTWQL---TLEGRAGALSYMKSFVSHKPDSLT---ESI---TLKFLTPIECAL 659 (2067)
T ss_pred HHHHHHHHHhcccCcccccccccccchHHHHH---HHHhhhhHHHHHHHHhccCcchhh---HHH---HHhcCCcHHHHH
Confidence 346668988888774211 1111111122221 235677777777777776544322 221 123556777666
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCC
Q 035871 489 GHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGE 534 (1127)
Q Consensus 489 g~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~ 534 (1127)
. ++.++.-.|-.--..+..+..++.+.|||--+..-+|=.-...+
T Consensus 660 ~-lls~v~~~lk~yg~~~~~sa~lvrIr~~l~e~l~llp~~~~e~~ 704 (2067)
T KOG1822|consen 660 S-LLSQVPSVLKAYGNQLKRSALLVRIRAGLYELLLLLPPSSYEGS 704 (2067)
T ss_pred H-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhCCchhhHHH
Confidence 4 55677777776777888999999999999999999985544433
No 187
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=30.67 E-value=8e+02 Score=27.42 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=43.8
Q ss_pred HccCChhHHHHHHHHHhccchhHHhhcchhH---HH----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhc
Q 035871 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKET---QE----FIISSLIDSALHDDVASVRSAACRAIGVISC 826 (1127)
Q Consensus 763 l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~---q~----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~ 826 (1127)
+.|+++.|...++.|.++|=..+|..+..+. +. .-+..-|+....++++.||.+|+.-+-.+|+
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 5778899999999999998888887772211 11 1111234566788899999999988866653
No 188
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.40 E-value=3.8e+02 Score=31.60 Aligned_cols=103 Identities=18% Similarity=0.263 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHH
Q 035871 837 IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRG 916 (1127)
Q Consensus 837 v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRA 916 (1127)
+..++-++.+.+.++...|=-.|.-+++-|-..+-.... .++=..+.+-..++..||--||--|-+|
T Consensus 127 L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-------------~~ld~lv~~Ll~ka~~dnrFvreda~kA 193 (334)
T KOG2933|consen 127 LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-------------QELDDLVTQLLHKASQDNRFVREDAEKA 193 (334)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 356777888889999999988888888887776543221 1111223333456677888899999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHH
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~AL 967 (1127)
|-.+. +++. -.++++.|+-++...+..+|-+||--.
T Consensus 194 L~aMV---------~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 194 LVAMV---------NHVT------PQKLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred HHHHH---------hccC------hHHHHHHHHHHHhhhchhhhhhhhccc
Confidence 99885 2221 256888999999999999999988653
No 189
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=30.29 E-value=1.2e+02 Score=40.19 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=93.9
Q ss_pred HHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchh---------chHHHHHHhhhhhh
Q 035871 800 SLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVR---------ITASWALANICDSI 870 (1127)
Q Consensus 800 ~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VR---------ikAAWALGNL~d~L 870 (1127)
-++...|-|+.+.||.+|.-.+..+.....-+.+ .....+++..-.|+-..|| .+++.+=-.-+..+
T Consensus 475 ~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~----~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~ 550 (1529)
T KOG0413|consen 475 NIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA----FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDL 550 (1529)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch----HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhh
Confidence 3566778899999999999998877533333333 2233333333345544444 33322221111111
Q ss_pred hhccc----cc--CCCCCCcccccHHHHHHHHHHHHhh--ccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHH
Q 035871 871 RHCID----DF--AFKPSIDSNANSHLMASLTESALNL--TKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLE 942 (1127)
Q Consensus 871 ~~~~~----~~--~~~~~~~~~is~~lL~~L~e~aL~a--~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E 942 (1127)
..... ++ .....-++++-..+ +.-.+++ +.|++.||-.|+|-|-..+.-.+... ..|
T Consensus 551 l~~~~~ii~d~~~~~~~~ge~~~e~~V----~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~-----------~fe 615 (1529)
T KOG0413|consen 551 LLDEQQIIQDFKLKLMNKGETRVEKDV----VYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEAS-----------KFE 615 (1529)
T ss_pred cCcchhhhhhcchhhhhccccHHHHHH----HHHHHHHhccCCCcccchhhHHHHHHHHhccchhh-----------cch
Confidence 11000 00 00000000111111 1222333 34677899999988877653333211 123
Q ss_pred HHHHHHHHhh-ccCCccchhhHHHHHHhhhcc-ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 035871 943 RIVQALVSCV-TTGNVKVQWNVCRALSNLFLN-ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAA 1009 (1127)
Q Consensus 943 ~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~n-~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~ 1009 (1127)
..+ .+++-+ ++.-+-||--+|-+||.++.. +.++.....|.. +|+..|.||.+ .|--+|-.
T Consensus 616 ~~L-~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~----~li~~~~d~es-~v~e~a~~ 678 (1529)
T KOG0413|consen 616 VVL-SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLH----TLISMLNDTES-DVTEHARK 678 (1529)
T ss_pred hHH-HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHH----HHHHHHhccHH-HHHHHHHH
Confidence 333 233444 567789999999999998755 444444556765 44445555554 36655544
No 190
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=30.19 E-value=1.1e+03 Score=28.92 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=43.1
Q ss_pred HHHHHHHHhhc-cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCCh
Q 035871 943 RIVQALVSCVT-TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNF 1001 (1127)
Q Consensus 943 ~~i~aLlk~l~-~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NF 1001 (1127)
-+|..|++.++ ..|...+..||.+|..+..-=. ...+.=.+.++.-||..++.|.-+
T Consensus 312 PiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~se 369 (441)
T PF12054_consen 312 PIIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSE 369 (441)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCccc
Confidence 47888888885 5789999999999999874322 223333578999999999887654
No 191
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=29.97 E-value=4.9e+02 Score=33.92 Aligned_cols=254 Identities=20% Similarity=0.155 Sum_probs=133.2
Q ss_pred HHccCChhHHHHHHHHHhcc--chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGI--TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDK 839 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~I--gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ 839 (1127)
.|++.++.+++.|..=+-.+ |.+. -..+-+|..=|. .+.++++..+..|.-.||.||=+++. ....+ ..+++-
T Consensus 241 mL~~q~~~~qsnaaaylQHlcfgd~~--ik~~vrqlggI~-kLv~Ll~~~~~evq~~acgaLRNLvf-~~~~~-~NKlai 315 (717)
T KOG1048|consen 241 MLMSQDPSVQSNAAAYLQHLCFGDNK--IKSRVRQLGGIP-KLVALLDHRNDEVQRQACGALRNLVF-GKSTD-SNKLAI 315 (717)
T ss_pred HHhccChhhhHHHHHHHHHHHhhhHH--HHHHHHHhccHH-HHHHHhcCCcHHHHHHHHHHHHhhhc-ccCCc-ccchhh
Confidence 34566677777665443332 1111 011112222232 23488889999999999999999973 22221 122221
Q ss_pred H----HHHHHHhcCC-CCcchhchHHHHHHhhhhh--hhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-----CC-
Q 035871 840 F----IHAVEINTHD-PLVSVRITASWALANICDS--IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-----DG- 906 (1127)
Q Consensus 840 a----i~aLl~~l~D-~~~~VRikAAWALGNL~d~--L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-----D~- 906 (1127)
. +.++...+.. -+..||...+=.|-||.+. +.. .+..+.|..|.+.++.=-. +.
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~-------------~ii~~al~tLt~~vI~P~Sgw~~~~~~ 382 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM-------------LIITSALSTLTDNVIIPHSGWEEEPAP 382 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH-------------HHHHHHHHHHHHhhcccccccCCCCcc
Confidence 1 4555555542 3456888888888888775 221 1222334444332221100 11
Q ss_pred -----chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc------cCCccchhhHHHHHHhhh----
Q 035871 907 -----DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT------TGNVKVQWNVCRALSNLF---- 971 (1127)
Q Consensus 907 -----DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~------~~n~KVRWNAc~ALGnl~---- 971 (1127)
..|=.|+++-|+|+...-+.- . +.-+-.+..|++|+..++ +-+.|--=|+-+-|-|+-
T Consensus 383 ~~~~~~~vf~n~tgcLRNlSs~~~ea------R-~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~ 455 (717)
T KOG1048|consen 383 RKAEDSTVFRNVTGCLRNLSSAGQEA------R-EQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLE 455 (717)
T ss_pred cccccceeeehhhhhhccccchhHHH------H-HHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhh
Confidence 237778888888885211100 0 000012334555554443 122332223322222221
Q ss_pred --------------------------------------c-ccccccc---------CCCchhHHHHHHHHHHhcCCChHH
Q 035871 972 --------------------------------------L-NETINLE---------DMDWAPSVFSILLLLLRDSSNFKI 1003 (1127)
Q Consensus 972 --------------------------------------~-n~~i~~~---------~~~wa~~v~~~Ll~ll~~~~NFKV 1003 (1127)
. ++++++. +.-|.+.|+..=+.++..++|.-+
T Consensus 456 ~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~T 535 (717)
T KOG1048|consen 456 AEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNT 535 (717)
T ss_pred hhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHH
Confidence 0 0112111 125899999998888889999999
Q ss_pred HHHHHHHhcCCC---------ccccc-----C---------CchHHHHHHHHHHHHHhcc
Q 035871 1004 RIQAAAALAVPS---------SVSDY-----G---------KSFSDVVQGLEHILENLGA 1040 (1127)
Q Consensus 1004 Ri~AA~AL~~p~---------~R~~y-----G---------~~~~~V~~~L~~aLe~~~s 1040 (1127)
=-.+|.||=... -|... | +.-.+|+++...+|.|+..
T Consensus 536 lEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 536 LEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR 595 (717)
T ss_pred HHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence 999999983221 11111 1 1234689999999999853
No 192
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.23 E-value=1.6e+03 Score=30.03 Aligned_cols=308 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhhhhhcCC-ChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 035871 435 LMTCLLFDP-CLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLA 513 (1127)
Q Consensus 435 Llt~iL~Dp-s~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLt 513 (1127)
.+..++.|. +--||.+++.++..+++. .+-.+. +|-|+-.+ +|..|..++..-...-+-+
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD--------~nF~~d----sFlp~len-------lf~~lfkll~~~~e~Dtk~ 590 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDD--------WNFSED----SFLPYLEN-------LFVLLFKLLKAVEECDTKT 590 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhh--------ccCChh----hhhhhHHH-------HHHHHHHHHHHHhhhhhHH
Q ss_pred HHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHhhhcC
Q 035871 514 SLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSP-APVQVKQMFLEEISAG 592 (1127)
Q Consensus 514 qlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~-~~~eV~~~L~~e~ssg 592 (1127)
++|..++.||.-+ .+.+.+..-.+..++-.--...+.+.-++.+-|+.|-.++.+-. -+.+....|..-+.-+
T Consensus 591 ~VL~~ls~lI~r~------~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~ 664 (978)
T KOG1993|consen 591 SVLNLLSTLIERV------SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELS 664 (978)
T ss_pred HHHHHHHHHHHHH------HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHh
Q ss_pred CCCCCC------cchhHHHHHhhhhcCC--------------CCchHhHHHHHHHHHHhhC-----hhhhhhhHHHHHHH
Q 035871 593 SVEVDK------RSGVLFTLLQCSERLA--------------SPAICFESLQALRAVSHNY-----PNIMSSYWQQVSTI 647 (1127)
Q Consensus 593 ~~~~~~------~s~~L~~Ll~~~~~~~--------------~~~vRlEAlQvL~ala~~y-----p~l~~~~~~~l~~v 647 (1127)
.+...+ ..|.-.++........ .+..--|-|+++-.+.+.| +..++.|...+...
T Consensus 665 ~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~ 744 (978)
T KOG1993|consen 665 TDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKK 744 (978)
T ss_pred cCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCC
Q 035871 648 VFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAP 727 (1127)
Q Consensus 648 l~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p 727 (1127)
+++++.+...+. +++..|+.+.+++.-
T Consensus 745 ~~~~l~dvr~eg--------------------l~avLkiveili~t~--------------------------------- 771 (978)
T KOG1993|consen 745 LNDLLDDVRNEG--------------------LQAVLKIVEILIKTN--------------------------------- 771 (978)
T ss_pred HHHHHHHhhHHH--------------------HHHHHHHHHHHHhhh---------------------------------
Q ss_pred cccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHc-----cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHH
Q 035871 728 LYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQ-----HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLI 802 (1127)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~-----d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Ll 802 (1127)
|+++ ..+..+.||..++ ++.|.+-.--....|.|. -.++..+++ +
T Consensus 772 --------------~il~------~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~--------l~n~~~~ms--v 821 (978)
T KOG1993|consen 772 --------------PILG------SLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS--------LRNPSLFMS--V 821 (978)
T ss_pred --------------HHHH------hhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH--------hcChHHHHH--H
Q ss_pred hhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcch
Q 035871 803 DSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSV 855 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~V 855 (1127)
++..+ ..-+-+.+-||+|+ +|+.+. ++.+..-.+=|+...+.-.++.|
T Consensus 822 lqt~~----~~d~~~~~li~~WI~~~~~I~-~~k~rKl~~LalsSll~t~~~~i 870 (978)
T KOG1993|consen 822 LQTKN----TYDILIAMLIGNWILLFDHIN-HPKDRKLNTLALSSLLRTNNPDI 870 (978)
T ss_pred HHhhh----hHHHHHHHHHHHHHHHcccCC-CHHHhhHHHHHHHHHhccCCcHH
No 193
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.84 E-value=2.3e+02 Score=35.13 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc--hhhhhHH
Q 035871 837 IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD--KIKSNAV 914 (1127)
Q Consensus 837 v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D--KVRsnAv 914 (1127)
+.++..-+.....||+..+|.-|+.-|||+....-. ... ..-..++++.++...|++ .|.-.|+
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~------------kv~--th~~~~ldaii~gL~D~~~~~V~leam 321 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD------------KVR--THKTTQLDAIIRGLYDDLNEEVQLEAM 321 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH------------HHH--HhHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 356666666778999999999999999999865211 011 112234444444444444 5999999
Q ss_pred HHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCc----hhHHHHH
Q 035871 915 RGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDW----APSVFSI 990 (1127)
Q Consensus 915 RALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~w----a~~v~~~ 990 (1127)
-.|-.++..+....+.. ..-.+...+.....+.++|+|-||-.+.|.+-. +.+.+| +++|...
T Consensus 322 ~~Lt~v~~~~~~~~l~~--------~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~-----l~g~~~e~~Fte~v~k~ 388 (533)
T KOG2032|consen 322 KCLTMVLEKASNDDLES--------YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK-----LAGGGWEEFFTEQVKKR 388 (533)
T ss_pred HHHHHHHHhhhhcchhh--------hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH-----HcCCCchhhhHHHHHhc
Confidence 99999987776655421 122344456666678999999999999998742 223334 2334323
Q ss_pred H---HHHHhcCCChHHHHHHHHHhc
Q 035871 991 L---LLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 991 L---l~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+ +.-+ +++|-+|=...-.++.
T Consensus 389 ~~~lllhl-~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 389 LAPLLLHL-QDPNPYVARACRSELR 412 (533)
T ss_pred cccceeee-CCCChHHHHHHHHHHH
Confidence 3 3333 5677777544444443
No 194
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=27.33 E-value=3.5e+02 Score=32.77 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=31.2
Q ss_pred hhhhhhHHHHHHHHH-HHH-hhCCccccccccccccCCCCCCCCcCccchhhhhhcC---CChhHHHHHHHHHHHHh
Q 035871 388 VQSSKVRVAALVCLQ-DLC-RADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFD---PCLKARMASASTLAAML 459 (1127)
Q Consensus 388 ~~~skVR~~AL~~L~-al~-k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~D---ps~KvR~aA~~~LsaLL 459 (1127)
..++|-|+.+|.-+. +++ +..++ -+.|.- .||...++++ |.......|.+++..++
T Consensus 71 dk~AktR~~~le~i~lalt~r~l~~-------fi~e~~---------~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~ 131 (427)
T KOG2842|consen 71 DKSAKTRQEALEKIYLALTSRHLPE-------FILENR---------ATLEDLLEKCLNKPKSDEQLLAAALIGLLC 131 (427)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhHH-------HhhhhH---------HHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 346899999988775 222 43222 223322 4666666555 66655555555555543
No 195
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=26.99 E-value=1.2e+02 Score=32.44 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=46.7
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 801 LIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
++....+++++-+|-+|+-.+-.+.. . .+.+.....+...+.|+..-||.-.+|+|..++-.
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~-----~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIR-----K--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGG-----G--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHH-----h--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 44577899999999999777654432 1 33466667777778999999999999999999853
No 196
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=26.51 E-value=3.9e+02 Score=34.39 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=109.6
Q ss_pred hhhHHHHHHHhhcCCCCCCCCcch----hhhhhhHHHHHhhhhheeEEcCccHHHHHHHHHHHHHH---------HHhhh
Q 035871 61 TSDLLFLLELVSNAPPRDGEDSTL----TFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSIINF---------FLVKA 127 (1127)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~c~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~ 127 (1127)
+|++..+||...+-- .+.-.|. .+-++|+-+||-..-...|=+.--..++++.|.+|+.| |+..+
T Consensus 561 tsvc~~il~~f~k~~--~~~i~D~~~~q~L~evc~tl~da~~~~~~ed~kR~~s~LI~~f~~mVdfg~~~eq~L~f~vec 638 (930)
T KOG3682|consen 561 TSVCSRILEIFSKTF--THTISDISACQFLIEVCRTLCDAYRLEESEDVKRAASQLICSFLSMVDFGTNLEQCLEFIVEC 638 (930)
T ss_pred HHHHHHHHHHHHhcC--CcccccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 578889999988764 1222232 34456766777666666766666788999999999875 22222
Q ss_pred cc--cccccchhhHHHHHHHHHHhhhcccCCCCcchhhHHHHhhhhhhccccchhhccccccccccccchhccccCCCCC
Q 035871 128 AT--KSSATRFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCLYNASATQRSTAESGKRLHRYSS 205 (1127)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~lv~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1127)
-. --+-.-+.+.++.+.+|.+...+.|.| -+.-|++-|.-- .-.-||.+. .-+|+|-|
T Consensus 639 Re~f~~~~~~li~LI~S~n~la~~t~K~gkK-----~a~Fvr~Cia~~--------~~TIPSv~~-----p~~rlnly-- 698 (930)
T KOG3682|consen 639 REDFGLRQNSLIHLIESLNQLAHRTQKSGKK-----KADFVRVCIANL--------SLTIPSVRD-----PSRRLNLY-- 698 (930)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHh--------heecccccC-----hhhHhhhh--
Confidence 11 011122345666777777777776633 345566555411 222233321 11222211
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhcCCCCccchh
Q 035871 206 LWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKVIDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDH 285 (1127)
Q Consensus 206 ~~e~~~~a~~~l~~~~~r~~~~~~~~~~~~~~e~~~~v~d~~a~~~~~~ed~~~~~r~~~s~l~cL~~~l~~~k~~~~d~ 285 (1127)
++..-+-.+|+.++...- ..-..+|-+-+|- ..--+-...++. | .-|...++.-|-++=.+|-..+.-|
T Consensus 699 ---l~~~qvaLl~~~lsq~d~-----~~~~aIeyl~ev~-ltdG~ks~~~~~-~-~~~ic~f~StL~~~P~npE~gvl~~ 767 (930)
T KOG3682|consen 699 ---LQNIQVALLANFLSQMDM-----SSVRAIEYLDEVS-LTDGPKSSVCAT-V-SPLICQFLSTLSFCPENPEMGVLSH 767 (930)
T ss_pred ---hHHhHHHHHhChhhhHHH-----HHHHHHHHhhccc-ccCCCCCchHHH-H-HHHHHHHHHHheeCCCCCcccHHHH
Confidence 122222234444443321 2234455444443 000111133443 3 4666666666667767888888899
Q ss_pred hhhHHHHHHHH
Q 035871 286 VSGFVTALRLF 296 (1127)
Q Consensus 286 ~~~~~~~lk~f 296 (1127)
+.+++++++-+
T Consensus 768 ~~~il~iv~~~ 778 (930)
T KOG3682|consen 768 FSKILAIVERE 778 (930)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 197
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=25.52 E-value=92 Score=30.32 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=35.8
Q ss_pred CchHhHHHHHHHHHHhhChhh-hhhhHHHHHHHHHHHHHhh
Q 035871 616 PAICFESLQALRAVSHNYPNI-MSSYWQQVSTIVFKILKAA 655 (1127)
Q Consensus 616 ~~vRlEAlQvL~ala~~yp~l-~~~~~~~l~~vl~~~L~~~ 655 (1127)
+.||..|+.+|..+..+||.. +..+|..+.+-+++++.-.
T Consensus 25 ~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 25 PDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 689999999999999999999 8889999988888887543
No 198
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.45 E-value=1.7e+03 Score=29.43 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=55.0
Q ss_pred HccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHH
Q 035871 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIH 842 (1127)
Q Consensus 763 l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~ 842 (1127)
..|+++.+-.-||+.||+ .+.+.++++|.-|...+-.++.- ...-+-+..=.+
T Consensus 319 h~D~e~~ll~~~~~~Lg~------------------------fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d 371 (938)
T KOG1077|consen 319 HLDSEPELLSRAVNQLGQ------------------------FLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQD 371 (938)
T ss_pred HcCCcHHHHHHHHHHHHH------------------------HhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHH
Confidence 346666666666666664 23678888999998888777531 111111223346
Q ss_pred HHHHhcC-CCCcchhchHHHHHHhhhhh
Q 035871 843 AVEINTH-DPLVSVRITASWALANICDS 869 (1127)
Q Consensus 843 aLl~~l~-D~~~~VRikAAWALGNL~d~ 869 (1127)
.++..+. +++.+||.+|.--|=-|||.
T Consensus 372 ~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhch
Confidence 6777787 99999999999999999985
No 199
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=25.29 E-value=41 Score=30.25 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHhcC----C--CCcchhchHHHHHHhhh
Q 035871 832 QSAEIIDKFIHAVEINTH----D--PLVSVRITASWALANIC 867 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~----D--~~~~VRikAAWALGNL~ 867 (1127)
.|..|+-+++.+.++.++ | -...||-+||+|-+||-
T Consensus 18 Gd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLl 59 (66)
T PF06786_consen 18 GDQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLL 59 (66)
T ss_pred CccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHH
Confidence 356666677766666542 3 34579999999999985
No 200
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=25.25 E-value=9.6e+02 Score=26.59 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
+..+|.+......+|+.++...+...| .+-..+..+.+.....+++-+.|.+-.+.. .++-.| ..+..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~------~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~----~~~r~f--~~L~~ 78 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVP------PVLQTLVSLVEQGSLELRYVALRLLTLLWK----ANDRHF--PFLQP 78 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchh------HHHHHHHHHHcCCchhHHHHHHHHHHHHHH----hCchHH--HHHHH
Q ss_pred HHHh----------cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhH
Q 035871 844 VEIN----------THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNA 913 (1127)
Q Consensus 844 Ll~~----------l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnA 913 (1127)
++.. -++....+.+..|++...+|...-.+..+ +...+...++ -.+++-+++.|
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~---------------ll~~ls~~L~-~~~~~~~~ala 142 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVD---------------LLPLLSGCLN-QSCDEVAQALA 142 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHH---------------HHHHHHHHHh-ccccHHHHHHH
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-ccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHH
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILL 992 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll 992 (1127)
+.+|..|. ..+-.-.-.+-.+|.+.+ .+..+.|-+--|.=++.+-.-..=......-...++..|.
T Consensus 143 le~l~~Lc-------------~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW 209 (234)
T PF12530_consen 143 LEALAPLC-------------EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLW 209 (234)
T ss_pred HHHHHHHH-------------HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHH
Q ss_pred HHHhcCCC------hHHHHHHHHHh
Q 035871 993 LLLRDSSN------FKIRIQAAAAL 1011 (1127)
Q Consensus 993 ~ll~~~~N------FKVRi~AA~AL 1011 (1127)
+.....+. ++||+-|-.||
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~a~~al 234 (234)
T PF12530_consen 210 EYTSSSDVNVASQWTSVRLAAFEAL 234 (234)
T ss_pred hhccccccchHHHHHHHHHHHHhcC
No 201
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=25.24 E-value=4.1e+02 Score=28.37 Aligned_cols=115 Identities=15% Similarity=0.258 Sum_probs=71.0
Q ss_pred HHHHHHHHhcccc-----hHHHHHHHHHHHHhHh--cccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 035871 496 HNGIIYLIQRETH-----DRLLASLFKILMPLIS--CTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCL 568 (1127)
Q Consensus 496 Hr~Ll~aL~~E~~-----~~vLtqlLKcLa~LVq--~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL 568 (1127)
|..|+..++..+. ..+|...|.++.-|.+ ...++-+...|+.+++. ++.... .|.+ +...||+.|
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~----~Vn~~~---~d~~-i~q~sLaIL 84 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIAS----YVNSSA---MDAS-ILQRSLAIL 84 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHH----HHcccc---ccch-HHHHHHHHH
Confidence 3445566665553 4688888999999977 45667777777776665 444222 2433 666999999
Q ss_pred HHHHhcCCC-hhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChh
Q 035871 569 TAALSTSPA-PVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPN 635 (1127)
Q Consensus 569 ~avls~~~~-~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~ 635 (1127)
..++..++. -..|. +|+ -+..|+.+.+. .+..++..|+-.+.|+...-|.
T Consensus 85 Es~Vl~S~~ly~~V~----~ev------------t~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVE----QEV------------TLESLIRHLQV-SNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhCCHHHHHHHh----ccC------------CHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCh
Confidence 999876554 22232 222 13445555543 4456777888777776655443
No 202
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=24.68 E-value=93 Score=31.54 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=40.2
Q ss_pred cCCCHhHHHHHHHHHhhhh-cccccccchHHHHH--HHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 807 HDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDK--FIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 807 ~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~--ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
...|+.+-+-||--||.++ .||.-+. ++++ +-..+...+.+++..||..|--|+..+
T Consensus 54 ~s~d~~~laVac~Dig~~vr~~p~gr~---ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 54 KSDDPTTLAVACHDIGEFVRHYPNGRN---IIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-GGGHH---HHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cCCCcceeehhhcchHHHHHHChhHHH---HHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3458888899999999998 5666432 2222 235566778999999999998777655
No 203
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=24.39 E-value=2.4e+03 Score=30.99 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=26.6
Q ss_pred HHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 774 AVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 774 Ac~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
|+..+..+=...|..|+.-. ..++. |+..+...++..+-..++.+|-.++
T Consensus 1439 AL~~lvdLft~fFd~L~~~L-~~~l~-ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1439 ALQLVVDLFVKFYPTVNPLL-KKVLM-LLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHcCchHHHHHHHHHHHHHHH
Confidence 34444444456676665422 22333 3445555566666666677776665
No 204
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.94 E-value=4.4e+02 Score=34.93 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccC
Q 035871 489 GHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPY 528 (1127)
Q Consensus 489 g~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY 528 (1127)
+-++..+--.|+.+|++|.+.-++.++++|++.|..+.|=
T Consensus 206 ~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 206 GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 3456788889999999999999999999999999999984
No 205
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=23.52 E-value=6.2e+02 Score=28.96 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGL 917 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRAL 917 (1127)
......++..+..++...- .-||||.|+... +|.-+.+.+++++.....++.+++ .|-.|+. .|..|+
T Consensus 117 ~elg~wll~rL~~~~~~~~--~wWAlGRlgaR~-------p~yGs~h~Vvp~~~~~~wl~~ll~--~dwk~~~-~a~fA~ 184 (249)
T PF12531_consen 117 IELGEWLLKRLQKPSESAQ--HWWALGRLGARV-------PFYGSAHNVVPPEVAEQWLDALLA--LDWKKPP-PAAFAA 184 (249)
T ss_pred HHHHHHHHHHhcCCCCCcc--hHHHHHHHHhcC-------cccCCcccccCHHHHHHHHHHHHh--cCCCCCc-hHHHHH
Confidence 4556677777776664443 459999999753 233334557888888777777652 2322333 788888
Q ss_pred hhhhhccccC
Q 035871 918 GNLSRFVKYT 927 (1127)
Q Consensus 918 GnLl~~l~~~ 927 (1127)
-.|.|...+.
T Consensus 185 ~q~aR~TgDR 194 (249)
T PF12531_consen 185 VQMARMTGDR 194 (249)
T ss_pred HHHHHhcCCc
Confidence 8888776653
No 206
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=4.4e+02 Score=36.67 Aligned_cols=132 Identities=21% Similarity=0.215 Sum_probs=81.7
Q ss_pred CCcchhhHHHHhhhhhhccccchhhccccccccccccchh----ccccCCCCCHH-HHHHHHHHHHHHHHhhcCCCCChh
Q 035871 157 FSPLEIVHLVKFVLHALECSHAEFVCLYNASATQRSTAES----GKRLHRYSSLW-EVQALSITMLGEAFSRAGSSLPVD 231 (1127)
Q Consensus 157 ~~~~e~~~lv~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-e~~~~a~~~l~~~~~r~~~~~~~~ 231 (1127)
|-..+|..++..+..+-+-+.-+-..+.....+---+... --.+....++- |+.+.-++|+=+++.+.|-.+..+
T Consensus 801 l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~ 880 (1610)
T KOG1848|consen 801 LRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHG 880 (1610)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccc
Confidence 3455778888877777655543222222211110000000 11222223332 777888899999999999988788
Q ss_pred hHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhcCCCCccc-hhhhhHHHHHHHHHH
Q 035871 232 IWQSTIEVLRKVIDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLS-DHVSGFVTALRLFFV 298 (1127)
Q Consensus 232 ~~~~~~e~~~~v~d~~a~~~~~~ed~~~~~r~~~s~l~cL~~~l~~~k~~~~-d~~~~~~~~lk~f~~ 298 (1127)
|++|+|.||-+.|+-.-| |.+. .|. -..||+++-+|=-.+++ |-+..++.++-.|--
T Consensus 881 -w~sV~eml~s~~d~~~ek----ek~i--vrl---gf~~lrlIssDfLqSLp~sci~~lidtl~~fs~ 938 (1610)
T KOG1848|consen 881 -WQSVFEMLRSATDFGSEK----EKKI--VRL---GFSCLRLISSDFLQSLPTSCILDLIDTLLVFSR 938 (1610)
T ss_pred -cHHHHHHHHHHhhccchh----hhhH--HHh---hhhhhhhhhhcchhcCChHHHHHHHHHHHHHHh
Confidence 999999999998865443 3333 243 23478888887767777 777777877777754
No 207
>PRK04964 hypothetical protein; Provisional
Probab=22.94 E-value=58 Score=29.36 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHhcC----CCC--cchhchHHHHHHhhh
Q 035871 832 QSAEIIDKFIHAVEINTH----DPL--VSVRITASWALANIC 867 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~----D~~--~~VRikAAWALGNL~ 867 (1127)
.|..|+-+++.+.+++++ |+. ..||-+||+|-+||-
T Consensus 18 Gd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLl 59 (66)
T PRK04964 18 GDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLL 59 (66)
T ss_pred CccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 466677777777776543 333 479999999999985
No 208
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=22.12 E-value=84 Score=25.85 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=16.5
Q ss_pred HhhhccCCCHhHHHHHHHHH
Q 035871 802 IDSALHDDVASVRSAACRAI 821 (1127)
Q Consensus 802 ll~~~~De~~~VRaAA~RAL 821 (1127)
+...+.|+++.||.||...|
T Consensus 23 i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 23 IIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHhcCCChHHHHHHHHHC
Confidence 44678999999999998754
No 209
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.63 E-value=1.6e+02 Score=30.93 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=48.4
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 801 LIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
++..-.++++.-+|-+|+-.+..+..- ..+.+.+.+.+...++|+..-||.-.+|+|..++-.
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 445677999999999998888766431 122456667777778999999999999999999864
No 210
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.56 E-value=2.3e+02 Score=27.12 Aligned_cols=66 Identities=29% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch---hhhhHHHHHhhhhhcccc
Q 035871 850 DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK---IKSNAVRGLGNLSRFVKY 926 (1127)
Q Consensus 850 D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK---VRsnAvRALGnLl~~l~~ 926 (1127)
|.+..+|-.||--|+.||+.-. ...+.+-.++++..+++..|..+ ..-.|+.+|..|+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~--------------~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----- 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFS--------------SSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----- 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhc--------------cccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCCCChhHHHHHHHHHH
Q 035871 927 TSSSHPASLGDSRWLERIVQALV 949 (1127)
Q Consensus 927 ~~~~~~~~~g~~~~~E~~i~aLl 949 (1127)
..+|..++
T Consensus 78 ---------------~~~vr~~i 85 (92)
T PF07571_consen 78 ---------------PEAVRALI 85 (92)
T ss_pred ---------------HHHHHHhh
No 211
>PLN00061 photosystem II protein Psb27; Provisional
Probab=21.38 E-value=9.6e+02 Score=25.44 Aligned_cols=99 Identities=23% Similarity=0.327 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccc-hhhHHHHHHHHHHH
Q 035871 985 PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSF-KYRVALQKQKSSFL 1063 (1127)
Q Consensus 985 ~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Ey-kyrd~L~~Q~~~~l 1063 (1127)
+-|+.++..+. ++|-|.+ .-.-|- -+|-.....|++.|-++|+. +.+|...| +.++.=+++++.|+
T Consensus 30 ~~~~~~~~~~f--dp~e~tk--sg~~Lp-----g~Y~kdtr~VV~tLresl~l----~p~D~~~~~~aa~~Ake~IndYi 96 (150)
T PLN00061 30 EGVVGAIKSLF--DPNEKTK--SGKKLP-----KAYLKSAREVVKTLRESLKE----DPKDEAKFRRTADAAKESIREYL 96 (150)
T ss_pred ccHHHHHHHhc--Ccccccc--ccccCc-----hHHHHHHHHHHHHHHHHHcc----CCcchHHHHHHHHHHHHHHHHHH
Confidence 34667766666 4665432 222221 02333345677777777764 34666676 34677788888888
Q ss_pred HHHHHHHhhcccccccccccccCCCCchhHHHHHHHHHHHHHHHhccC
Q 035871 1064 EEWFKVLCSSLGESTTHLENENNSVGNQKKEMISKAIRSLIEVYEGRK 1111 (1127)
Q Consensus 1064 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1111 (1127)
-.| |+ ...-.+..-=..+..|+++|..-|.+.+
T Consensus 97 sry--------R~-------~~~V~gl~SfttMqtALnsLAghYssyG 129 (150)
T PLN00061 97 GNW--------RG-------QKTVAEEESYVELEKAIRSLASFYSKAG 129 (150)
T ss_pred HHh--------cC-------CccccccchHHHHHHHHHHHHHHHHhcC
Confidence 554 54 1111222334556789999999999883
No 212
>PF14961 BROMI: Broad-minded protein
Probab=21.27 E-value=3.4e+02 Score=37.17 Aligned_cols=118 Identities=22% Similarity=0.312 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHHHhhCCccc--cccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhh
Q 035871 391 SKVRVAALVCLQDLCRADPKSF--TTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQ 468 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l--~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq 468 (1127)
-.||+.|++.| ++..+-.+ ..+|+.|. .+ ++-.|.||++-.+-.++++-+.++.-+...
T Consensus 176 ~evR~eAlq~L---c~~p~SDVls~E~W~~L~------------~~-L~~~LsDpD~~is~~~L~f~Ak~fssSpl~--- 236 (1296)
T PF14961_consen 176 KEVRLEALQIL---CSAPPSDVLSCESWSVLR------------EN-LTDALSDPDPEISDASLRFHAKMFSSSPLN--- 236 (1296)
T ss_pred hHHHHHHHHHH---hcCChhhccccccHHHHH------------HH-HHHHcCCCCHHHHHHHHHHHHHhccCCchh---
Confidence 36899988766 66555322 45666554 12 355789999999999999999988875322
Q ss_pred hhhhccccCCcccccchHHHHHHHHHHHHHHHHHH-----hcccchH-----------HHHHHHHHHHHhHhc---cc--
Q 035871 469 VAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLI-----QRETHDR-----------LLASLFKILMPLISC---TP-- 527 (1127)
Q Consensus 469 ~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL-----~~E~~~~-----------vLtqlLKcLa~LVq~---TP-- 527 (1127)
|.+|+|.+|+..| ..+...+ -...+||++..+.+- .|
T Consensus 237 ----------------------~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~ 294 (1296)
T PF14961_consen 237 ----------------------MTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSF 294 (1296)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchh
Confidence 2234444444333 2222222 235777777777654 23
Q ss_pred CCCCCCCchHHHHHHHHHHHhh
Q 035871 528 YSRMPGELMPNLIISLRARIEE 549 (1127)
Q Consensus 528 Y~RL~~~Ll~~vv~~l~~~i~~ 549 (1127)
.=|-|.-++..|+++....+.-
T Consensus 295 WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 295 WIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred hhcCcHHHHHHHHHHHHHHhcc
Confidence 3666777777777776665543
No 213
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.37 E-value=2.8e+02 Score=28.23 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=39.4
Q ss_pred hHHHHHccC-ChhHHHHHHHHHhccchhHHhhcchhHHHHHH----HHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 758 HMPLILQHI-SSMVRTAAVTCFAGITSSVFFSLLKETQEFII----SSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 758 ~Lp~~l~d~-~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i----~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
.|..+|..+ ++.+-+.||.=+|.+ -...|..+ ..+- ...|..++.++|+.||..|..|+..+.
T Consensus 47 ~L~~lL~~s~d~~~laVac~Dig~~----vr~~p~gr-~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 47 KLIKLLDKSDDPTTLAVACHDIGEF----VRHYPNGR-NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHH----HHH-GGGH-HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcceeehhhcchHHH----HHHChhHH-HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344566433 688889999888863 12234322 2111 113457789999999999999998874
No 214
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=20.04 E-value=3.7e+02 Score=34.90 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=63.5
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccc--cccCC
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETI--NLEDM 981 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i--~~~~~ 981 (1127)
...+.|.+||+--+-++. +.+. .+. ...-.-..|..|+..+...+-.|+-|||.||-|+.-...- .....
T Consensus 244 ~q~~~~qsnaaaylQHlc----fgd~--~ik--~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 244 SQDPSVQSNAAAYLQHLC----FGDN--KIK--SRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred ccChhhhHHHHHHHHHHH----hhhH--HHH--HHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 455567777766555552 1110 000 0001223477899999999999999999999999632221 11111
Q ss_pred CchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 982 DWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 982 ~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
.... =+++|..+++...+-.||.+.+..|-.-.
T Consensus 316 ~~~~-Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLS 348 (717)
T KOG1048|consen 316 KELN-GVPTLVRLLRHTQDDEVRELITGILWNLS 348 (717)
T ss_pred hhcC-ChHHHHHHHHhhcchHHHHHHHHHHhccc
Confidence 1111 14678888887777889999998886433
Done!