Query 035871
Match_columns 1127
No_of_seqs 156 out of 178
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:57:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.8 6E-16 2E-20 192.0 35.1 512 392-1037 105-722 (852)
2 4fdd_A Transportin-1; heat rep 99.7 7E-16 2.4E-20 191.3 26.7 502 392-1037 63-580 (852)
3 2bpt_A Importin beta-1 subunit 99.7 1.4E-14 4.7E-19 177.4 36.8 495 391-1036 109-649 (861)
4 1b3u_A Protein (protein phosph 99.7 6.1E-15 2.1E-19 172.2 31.6 446 437-1024 93-554 (588)
5 1b3u_A Protein (protein phosph 99.7 2.8E-15 9.6E-20 175.0 27.0 441 392-1014 141-585 (588)
6 1qgr_A Protein (importin beta 99.7 1.9E-13 6.6E-18 167.6 40.9 500 395-1037 107-660 (876)
7 1oyz_A Hypothetical protein YI 99.7 9.5E-16 3.2E-20 165.0 17.6 205 759-1037 28-234 (280)
8 2bpt_A Importin beta-1 subunit 99.7 5.4E-14 1.8E-18 172.2 33.9 517 391-1037 55-608 (861)
9 1oyz_A Hypothetical protein YI 99.6 6.4E-15 2.2E-19 158.6 16.0 205 758-1037 58-263 (280)
10 3ltj_A Alpharep-4; protein eng 99.6 4.7E-15 1.6E-19 151.9 12.7 180 758-1016 18-198 (201)
11 1qgr_A Protein (importin beta 99.6 7.3E-13 2.5E-17 162.5 31.3 341 602-1037 129-516 (876)
12 2jdq_A Importin alpha-1 subuni 99.6 1.2E-13 4E-18 156.6 22.1 344 559-1012 35-386 (450)
13 3ltm_A Alpha-REP4; protein eng 99.6 1.4E-14 4.9E-19 149.4 13.2 178 759-1015 24-202 (211)
14 1u6g_C TIP120 protein, CAND1; 99.5 1.3E-12 4.6E-17 168.2 29.6 522 391-1036 62-620 (1230)
15 1u6g_C TIP120 protein, CAND1; 99.5 8.3E-12 2.8E-16 160.8 34.5 502 392-1013 149-676 (1230)
16 1ibr_B P95, importin beta-1 su 99.5 5.4E-12 1.8E-16 142.8 29.0 302 602-995 129-460 (462)
17 2jdq_A Importin alpha-1 subuni 99.5 7.5E-13 2.6E-17 149.9 21.5 400 498-1012 24-439 (450)
18 1wa5_B Importin alpha subunit; 99.5 2.1E-12 7.1E-17 151.7 23.2 341 560-1013 103-454 (530)
19 4b8j_A Importin subunit alpha- 99.4 2.9E-12 9.8E-17 150.1 20.5 345 560-1014 90-441 (528)
20 4db8_A Armadillo-repeat protei 99.4 1.3E-12 4.6E-17 137.3 14.6 231 759-1014 17-249 (252)
21 4hxt_A De novo protein OR329; 99.4 1.8E-12 6E-17 135.1 15.2 231 759-1015 7-240 (252)
22 1wa5_B Importin alpha subunit; 99.4 7.5E-12 2.5E-16 147.0 22.0 231 761-1012 264-506 (530)
23 1ibr_B P95, importin beta-1 su 99.4 1.6E-10 5.4E-15 130.8 31.7 261 759-1036 177-461 (462)
24 3ltj_A Alpharep-4; protein eng 99.4 1.3E-12 4.4E-17 133.8 12.3 160 803-1037 20-180 (201)
25 3ltm_A Alpha-REP4; protein eng 99.4 2.9E-12 1E-16 132.1 12.3 159 804-1037 26-185 (211)
26 4db6_A Armadillo repeat protei 99.3 5.5E-12 1.9E-16 129.2 10.2 188 758-972 16-209 (210)
27 2z6h_A Catenin beta-1, beta-ca 99.3 7.3E-10 2.5E-14 133.8 30.1 482 391-1038 28-545 (644)
28 2z6g_A B-catenin; FULL-length, 99.3 2.3E-10 7.9E-15 142.1 26.2 447 439-1039 123-580 (780)
29 4db6_A Armadillo repeat protei 99.3 4.7E-11 1.6E-15 122.3 16.1 190 801-1013 16-206 (210)
30 4b8j_A Importin subunit alpha- 99.3 2.8E-11 9.7E-16 141.7 14.9 227 759-1014 122-356 (528)
31 3ul1_B Importin subunit alpha- 99.3 1.7E-10 5.8E-15 136.1 21.1 347 560-1014 73-428 (510)
32 4db8_A Armadillo-repeat protei 99.3 5.7E-11 2E-15 124.9 15.3 188 759-973 59-252 (252)
33 3ul1_B Importin subunit alpha- 99.2 1.1E-10 3.7E-15 137.7 18.4 227 759-1012 237-474 (510)
34 1jdh_A Beta-catenin; beta-cate 99.2 6.1E-10 2.1E-14 129.0 23.9 418 496-1039 19-447 (529)
35 3tpo_A Importin subunit alpha- 99.2 2E-10 7E-15 135.7 20.2 228 759-1012 256-493 (529)
36 2z6g_A B-catenin; FULL-length, 99.2 4.5E-10 1.6E-14 139.4 23.8 229 759-1015 404-662 (780)
37 3tpo_A Importin subunit alpha- 99.2 5.6E-10 1.9E-14 132.0 23.0 348 560-1014 92-447 (529)
38 2z6h_A Catenin beta-1, beta-ca 99.2 1.1E-09 3.8E-14 132.2 25.5 416 498-1039 18-444 (644)
39 1jdh_A Beta-catenin; beta-cate 99.2 1.5E-09 5E-14 125.8 22.7 435 435-1013 21-486 (529)
40 4hxt_A De novo protein OR329; 99.1 6.2E-10 2.1E-14 115.8 16.0 188 759-974 49-243 (252)
41 3now_A UNC-45 protein, SD10334 99.1 9.4E-09 3.2E-13 127.9 29.2 432 444-1014 217-692 (810)
42 2vgl_B AP-2 complex subunit be 99.1 7.8E-09 2.7E-13 124.2 25.6 420 435-1014 17-455 (591)
43 1te4_A Conserved protein MTH18 99.1 8E-11 2.7E-15 114.0 5.1 119 838-1013 11-130 (131)
44 1te4_A Conserved protein MTH18 99.0 1.6E-10 5.5E-15 111.8 5.0 114 759-920 17-131 (131)
45 3now_A UNC-45 protein, SD10334 99.0 1.1E-07 3.9E-12 118.3 31.5 228 758-1013 540-779 (810)
46 1wa5_C Importin alpha RE-expor 99.0 6.4E-07 2.2E-11 113.3 37.9 360 617-1049 261-660 (960)
47 3nmz_A APC variant protein; pr 98.9 3.8E-08 1.3E-12 115.7 20.8 227 767-1013 213-447 (458)
48 1w63_A Adapter-related protein 98.9 1.7E-07 5.8E-12 113.4 26.1 376 494-1012 107-486 (618)
49 2qk2_A LP04448P; mini spindles 98.9 6.5E-09 2.2E-13 110.2 12.1 176 804-1013 22-202 (242)
50 1wa5_C Importin alpha RE-expor 98.8 1.5E-06 5.3E-11 109.8 32.8 215 765-998 416-653 (960)
51 2vgl_B AP-2 complex subunit be 98.8 1.9E-08 6.5E-13 120.8 14.4 208 761-1013 56-265 (591)
52 4ady_A RPN2, 26S proteasome re 98.8 2.9E-08 9.9E-13 124.4 14.6 200 753-1015 472-675 (963)
53 2qk2_A LP04448P; mini spindles 98.7 1.1E-07 3.9E-12 100.6 14.9 181 761-972 22-205 (242)
54 1xqr_A HSPBP1 protein; armadil 98.7 8.1E-09 2.8E-13 114.7 5.8 153 840-1015 82-237 (296)
55 1xm9_A Plakophilin 1; armadill 98.7 2.7E-07 9.3E-12 107.5 17.7 238 758-1014 48-358 (457)
56 1w63_A Adapter-related protein 98.7 9.6E-07 3.3E-11 106.9 22.9 237 759-1037 112-396 (618)
57 3nmw_A APC variant protein; AR 98.6 1.2E-07 4E-12 107.9 13.0 226 767-1013 97-331 (354)
58 1xm9_A Plakophilin 1; armadill 98.6 1.8E-07 6.3E-12 108.9 14.9 228 759-1014 7-311 (457)
59 2x19_B Importin-13; nuclear tr 98.6 2.2E-05 7.6E-10 98.5 34.6 193 770-995 423-621 (963)
60 4ady_A RPN2, 26S proteasome re 98.6 2.1E-06 7.1E-11 107.9 23.2 186 766-1012 407-603 (963)
61 1xqr_A HSPBP1 protein; armadil 98.6 1.2E-07 4E-12 105.5 10.1 150 803-973 87-239 (296)
62 2x1g_F Cadmus; transport prote 98.6 2.5E-05 8.6E-10 98.4 32.3 137 809-973 476-616 (971)
63 3l6x_A Catenin delta-1; cateni 98.5 5.9E-07 2E-11 108.4 15.0 227 759-1012 53-334 (584)
64 3nmw_A APC variant protein; AR 98.5 5.1E-07 1.7E-11 102.7 13.2 192 759-974 132-336 (354)
65 3nmz_A APC variant protein; pr 98.5 5.4E-07 1.8E-11 105.9 13.1 193 758-974 247-452 (458)
66 3m1i_C Exportin-1; heat repeat 98.3 1.4E-05 4.9E-10 102.0 22.1 151 766-925 465-621 (1049)
67 3l6x_A Catenin delta-1; cateni 98.2 1.8E-05 6E-10 95.7 18.1 241 758-1014 94-382 (584)
68 3opb_A SWI5-dependent HO expre 98.2 8.4E-06 2.9E-10 100.7 14.1 196 797-1013 458-680 (778)
69 2vgl_A Adaptor protein complex 98.2 0.0009 3.1E-08 81.3 31.4 381 496-1022 113-509 (621)
70 2x19_B Importin-13; nuclear tr 98.1 0.01 3.4E-07 74.5 40.7 195 813-1039 423-625 (963)
71 1lrv_A LRV, leucine-rich repea 98.1 3.4E-06 1.2E-10 91.5 7.7 45 759-822 55-99 (244)
72 2x1g_F Cadmus; transport prote 98.1 0.0011 3.6E-08 83.7 31.1 245 766-1036 476-744 (971)
73 2qk1_A Protein STU2; STU2P, XM 98.1 1.2E-05 4.1E-10 86.8 11.1 212 761-1004 23-243 (249)
74 2qk1_A Protein STU2; STU2P, XM 98.1 2.1E-05 7.2E-10 84.9 12.8 192 806-1022 25-224 (249)
75 3opb_A SWI5-dependent HO expre 97.7 0.00047 1.6E-08 85.4 18.1 234 758-1012 461-724 (778)
76 3tjz_B Coatomer subunit gamma; 97.7 0.00028 9.7E-09 80.4 15.0 201 759-1014 73-277 (355)
77 2vgl_A Adaptor protein complex 97.7 0.00069 2.3E-08 82.3 19.1 98 759-868 116-216 (621)
78 3tt9_A Plakophilin-2; cell adh 97.6 6.9E-05 2.4E-09 80.7 7.1 187 804-1013 15-226 (233)
79 4hat_C Exportin-1; heat repeat 97.5 0.036 1.2E-06 71.2 32.0 149 809-973 465-619 (1023)
80 3tjz_B Coatomer subunit gamma; 97.4 0.00045 1.5E-08 78.8 11.1 221 761-1038 111-332 (355)
81 3ibv_A Exportin-T; karyopherin 97.4 0.11 3.7E-06 66.5 34.0 234 768-1032 457-748 (980)
82 3tt9_A Plakophilin-2; cell adh 97.3 0.0012 4.2E-08 71.0 12.1 187 759-972 13-229 (233)
83 3b2a_A TON_1937, putative unch 97.3 0.0013 4.5E-08 70.8 12.0 167 838-1036 32-199 (265)
84 2db0_A 253AA long hypothetical 97.1 0.011 3.7E-07 61.8 16.2 200 804-1055 39-241 (253)
85 1lrv_A LRV, leucine-rich repea 96.8 0.0013 4.4E-08 71.3 6.5 24 801-824 54-77 (244)
86 2db0_A 253AA long hypothetical 96.5 0.077 2.6E-06 55.5 16.3 170 761-971 39-209 (253)
87 4hat_C Exportin-1; heat repeat 96.4 0.1 3.6E-06 67.0 20.7 227 767-1037 466-699 (1023)
88 3b2a_A TON_1937, putative unch 96.4 0.036 1.2E-06 59.9 13.6 199 758-997 37-235 (265)
89 4gmo_A Putative uncharacterize 96.0 0.014 4.9E-07 71.5 9.6 65 804-869 41-106 (684)
90 4ffb_C Protein STU2; tubulin f 95.8 0.082 2.8E-06 57.0 13.5 184 759-972 14-212 (278)
91 4ffb_C Protein STU2; tubulin f 95.6 0.066 2.3E-06 57.8 11.9 147 761-925 62-215 (278)
92 4gmo_A Putative uncharacterize 95.6 0.051 1.7E-06 66.7 12.3 65 761-826 41-105 (684)
93 1lsh_A Lipovitellin (LV-1N, LV 95.6 0.3 1E-05 63.0 19.7 242 768-1107 339-596 (1056)
94 3m1i_C Exportin-1; heat repeat 94.5 0.11 3.7E-06 66.5 11.2 148 808-973 464-619 (1049)
95 3l9t_A Putative uncharacterize 94.4 0.12 4.2E-06 55.8 9.5 148 840-1035 72-220 (240)
96 3a6p_A Exportin-5; exportin-5, 94.0 7 0.00024 51.0 26.5 64 807-872 542-617 (1204)
97 3ibv_A Exportin-T; karyopherin 90.1 22 0.00074 45.6 23.6 210 765-992 506-748 (980)
98 2of3_A ZYG-9; multifunctional 90.1 3.7 0.00013 44.9 14.4 170 807-1012 56-232 (266)
99 2iw3_A Elongation factor 3A; a 89.9 2.8 9.7E-05 53.6 15.1 217 762-1013 103-321 (986)
100 2iw3_A Elongation factor 3A; a 87.7 59 0.002 41.8 24.7 268 495-871 55-327 (986)
101 3l9t_A Putative uncharacterize 86.7 1.5 5.1E-05 47.4 8.2 96 762-868 112-207 (240)
102 3grl_A General vesicular trans 83.1 54 0.0018 40.2 20.3 237 758-1012 126-390 (651)
103 3gjx_A Exportin-1; transport, 82.1 52 0.0018 42.7 20.8 100 767-873 492-600 (1073)
104 2of3_A ZYG-9; multifunctional 81.4 13 0.00043 40.8 12.9 185 750-973 42-237 (266)
105 3u0r_A Apoptosis inhibitor 5; 77.9 15 0.00051 43.5 12.6 134 896-1069 31-164 (507)
106 3gjx_A Exportin-1; transport, 76.6 22 0.00076 46.0 14.9 146 809-972 491-644 (1073)
107 3grl_A General vesicular trans 75.8 26 0.0009 42.8 14.4 63 392-464 137-199 (651)
108 3oc3_A Helicase MOT1, MOT1; re 73.0 15 0.0005 44.6 10.8 190 768-1011 242-431 (800)
109 4atg_A TAF6; transcription, TF 71.8 1E+02 0.0035 32.3 15.9 156 789-973 5-163 (196)
110 3a6p_A Exportin-5; exportin-5, 67.3 23 0.00078 46.3 12.1 188 765-973 58-277 (1204)
111 3o2t_A Symplekin; heat repeat, 66.9 55 0.0019 37.7 13.8 242 794-1069 24-302 (386)
112 1lsh_A Lipovitellin (LV-1N, LV 66.7 22 0.00074 45.9 11.6 111 904-1037 406-523 (1056)
113 3gs3_A Symplekin, LD45768P; he 61.2 1.2E+02 0.0042 32.8 14.5 105 792-920 12-117 (257)
114 3u0r_A Apoptosis inhibitor 5; 56.7 28 0.00094 41.3 8.9 52 811-868 42-94 (507)
115 1vsy_5 Proteasome activator BL 54.0 1.7E+02 0.0059 37.6 16.4 202 753-973 133-366 (997)
116 3oc3_A Helicase MOT1, MOT1; re 53.7 1.1E+02 0.0038 37.3 13.3 161 840-1037 175-345 (800)
117 1vsy_5 Proteasome activator BL 45.5 48 0.0017 42.6 9.4 194 751-972 753-966 (997)
118 3ebb_A Phospholipase A2-activa 41.0 1.1E+02 0.0036 34.0 10.2 99 767-868 161-263 (304)
119 3o2t_A Symplekin; heat repeat, 33.3 6E+02 0.021 29.1 17.9 97 764-868 73-183 (386)
120 2b6c_A Hypothetical protein EF 22.6 1.6E+02 0.0055 30.6 7.3 59 802-868 129-188 (220)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.75 E-value=6e-16 Score=191.96 Aligned_cols=512 Identities=12% Similarity=0.125 Sum_probs=299.5
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.||..+..++..|++.++ .+.|+.++|.- ...+.++++.+|.+|+.++..+.+.....+-. +
T Consensus 105 ~vr~~~a~~i~~ia~~~~---~~~wp~ll~~L-------------~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~--~ 166 (852)
T 4fdd_A 105 LIRATVGILITTIASKGE---LQNWPDLLPKL-------------CSLLDSEDYNTCEGAFGALQKICEDSAEILDS--D 166 (852)
T ss_dssp HHHHHHHHHHHHHHHHTT---TTTCTTHHHHH-------------HHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH--C
T ss_pred HHHHHHHHHHHHHHHhcC---ccccHHHHHHH-------------HHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch--h
Confidence 699999999999999873 36898887654 22556788999999999999998774332211 0
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
+ . ...+..+...|+..+.+ .+..+...+++|+..++...|-. + ...++.++..+...+.
T Consensus 167 ~-------~--------~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~-~-~~~~~~~l~~l~~~~~--- 225 (852)
T 4fdd_A 167 V-------L--------DRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQA-L-MLHIDSFIENLFALAG--- 225 (852)
T ss_dssp S-------S--------SSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHH-H-HTSHHHHHHHHHHHHT---
T ss_pred h-------h--------cchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHH-H-HHHHHHHHHHHHHHcC---
Confidence 0 0 01123344445555554 57789999999999888654310 0 1234455555555442
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH 631 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~ 631 (1127)
+. | ..+|..++.||+.++...+..-. ..+ ..++..++... ++....+|.+|+..+..++.
T Consensus 226 -d~-~-~~vr~~a~~~L~~l~~~~~~~~~--~~l--------------~~l~~~l~~~~-~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 226 -DE-E-PEVRKNVCRALVMLLEVRMDRLL--PHM--------------HNIVEYMLQRT-QDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp -CC-C-HHHHHHHHHHHHHHHHHCHHHHG--GGH--------------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTT
T ss_pred -CC-C-HHHHHHHHHHHHHHHHhCHHHHH--HHH--------------HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHhc
Confidence 21 2 24788999999988875432110 000 01222222222 23346799999999999875
Q ss_pred hC--hhhhhhhHHHHHHHHHHHHHhh---------CC-CCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccC
Q 035871 632 NY--PNIMSSYWQQVSTIVFKILKAA---------SP-EVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKG 699 (1127)
Q Consensus 632 ~y--p~l~~~~~~~l~~vl~~~L~~~---------~~-~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g 699 (1127)
+. ...+.+|...+..++.+.+... .. +|.. ++.......+..+|.+.|+.+.+.. |
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~--------~dd~~~~~~vr~~a~~~L~~la~~~----~ 353 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG--------GDDTISDWNLRKCSAAALDVLANVY----R 353 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------------------CCCCHHHHHHHHHHHHHHHH----G
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc--------cccccccchHHHHHHHHHHHHHHhc----c
Confidence 32 2334556666666666555210 00 1100 0000011134455666666553321 0
Q ss_pred ccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHh
Q 035871 700 TEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFA 779 (1127)
Q Consensus 700 ~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa 779 (1127)
...-..++. .+...++++++.+|.+|+.|||
T Consensus 354 ------------------------------------------------~~~~~~l~~-~l~~~l~~~~~~~R~aa~~alg 384 (852)
T 4fdd_A 354 ------------------------------------------------DELLPHILP-LLKELLFHHEWVVKESGILVLG 384 (852)
T ss_dssp ------------------------------------------------GGGHHHHHH-HHHHHHTCSSHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHH
Confidence 000011222 3445678889999999999999
Q ss_pred ccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchH
Q 035871 780 GITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITA 859 (1127)
Q Consensus 780 ~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikA 859 (1127)
.|....-..+. ..-..++.. +..+++|+++.||.+|+++||.+.-+-.-.....|+..+++.++..+.|++..||..|
T Consensus 385 ~i~~~~~~~~~-~~l~~~l~~-l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a 462 (852)
T 4fdd_A 385 AIAEGCMQGMI-PYLPELIPH-LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462 (852)
T ss_dssp HTTTTTHHHHG-GGHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHhcchHHHH-HHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99764433222 123445654 4577899999999999999999863211011234567889999999999999999999
Q ss_pred HHHHHhhhhhhhhccccc----------CCCCCCccc------------------c-cHHHHHHHHHHHH---hhccCCc
Q 035871 860 SWALANICDSIRHCIDDF----------AFKPSIDSN------------------A-NSHLMASLTESAL---NLTKDGD 907 (1127)
Q Consensus 860 AWALGNL~d~L~~~~~~~----------~~~~~~~~~------------------i-s~~lL~~L~e~aL---~a~~D~D 907 (1127)
+|||+|+++........+ .+..+.... + .++.+..++...+ +...|.+
T Consensus 463 ~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~ 542 (852)
T 4fdd_A 463 CSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED 542 (852)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccccc
Confidence 999999997643321100 000000000 0 0000000000000 1112222
Q ss_pred ----------------------------------------------------------hhhhhHHHHHhhhhhccccCCC
Q 035871 908 ----------------------------------------------------------KIKSNAVRGLGNLSRFVKYTSS 929 (1127)
Q Consensus 908 ----------------------------------------------------------KVRsnAvRALGnLl~~l~~~~~ 929 (1127)
.++..+.+++|.+.+.+..+
T Consensus 543 ~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~-- 620 (852)
T 4fdd_A 543 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN-- 620 (852)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh--
Confidence 23444444444443333210
Q ss_pred CCCCCCCChhHH--HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 035871 930 SHPASLGDSRWL--ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQA 1007 (1127)
Q Consensus 930 ~~~~~~g~~~~~--E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~A 1007 (1127)
..... +.+++.+++++.+.+..||=.|..++|.+.+. .+..-.++.+.+.+.|+..+ +..++.||.+|
T Consensus 621 -------~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~--~~~~~~~~l~~~lp~l~~~l-~~~~~~v~~~a 690 (852)
T 4fdd_A 621 -------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA--CFQHVKPCIADFMPILGTNL-NPEFISVCNNA 690 (852)
T ss_dssp -------GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--CGGGTGGGHHHHHHHHHHTC-CTTSHHHHHHH
T ss_pred -------HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHc-CccchHHHHHH
Confidence 00111 35678888888888999999999999998632 11122356678899999999 56789999999
Q ss_pred HHHhcCCCcc--cccCCchHHHHHHHHHHHHH
Q 035871 1008 AAALAVPSSV--SDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1008 A~AL~~p~~R--~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+.|+|....+ .++..+...+...|+..|++
T Consensus 691 ~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~ 722 (852)
T 4fdd_A 691 TWAIGEISIQMGIEMQPYIPMVLHQLVEIINR 722 (852)
T ss_dssp HHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCC
Confidence 9999854322 13455667788888777754
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.71 E-value=7e-16 Score=191.34 Aligned_cols=502 Identities=11% Similarity=0.071 Sum_probs=290.3
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.||+.|...|. +.+..+|..+-|+... ..+..|+.. +.|+++.+|..++.+++.|.... +. .+
T Consensus 63 ~vR~~a~~~Lk-------n~i~~~w~~~~~~~~~----~ik~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~---~~--~~ 125 (852)
T 4fdd_A 63 PTRSLSGLILK-------NNVKAHFQNFPNGVTD----FIKSECLNN-IGDSSPLIRATVGILITTIASKG---EL--QN 125 (852)
T ss_dssp HHHHHHHHHHH-------HHTTTSGGGCCHHHHH----HHHHHHHTT-TTCSSHHHHHHHHHHHHHHHHHT---TT--TT
T ss_pred HHHHHHHHHHH-------HHHHHccCCCCHHHHH----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhc---Cc--cc
Confidence 69999999994 3444589876444321 134556665 56999999999999999886542 10 00
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
- -++-..|...++.+ +..+....+.|+..++...|+.- ..+.+...++.+.+.+....
T Consensus 126 w--------------------p~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~-~~~~~~~~~~~il~~l~~~l 183 (852)
T 4fdd_A 126 W--------------------PDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEIL-DSDVLDRPLNIMIPKFLQFF 183 (852)
T ss_dssp C--------------------TTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHH-HHCSSSSCHHHHHHHHTTTT
T ss_pred c--------------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHh-chhhhcchHHHHHHHHHHHh
Confidence 0 01222334455553 45677788889999988887641 11111112333334444433
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH 631 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~ 631 (1127)
.+. + ..+|.+|+.+|..++...+. ... +....++..+++... +....+|..|+++|..++.
T Consensus 184 ~~~-~-~~vR~~A~~aL~~~~~~~~~--~~~--------------~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 184 KHS-S-PKIRSHAVACVNQFIISRTQ--ALM--------------LHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp TCS-S-HHHHHHHHHHHHTTTTTTCH--HHH--------------TSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred cCC-C-HHHHHHHHHHHHHHHhcccH--HHH--------------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 332 2 35889999999877754321 110 011124444544432 3456899999999999999
Q ss_pred hChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCC
Q 035871 632 NYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDN 711 (1127)
Q Consensus 632 ~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~ 711 (1127)
.+|..+.+|...+...+.++++.. .+.+...|+..+..+.+.. ... +.+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~--------------------~~~vr~~a~e~l~~l~~~~-------~~~--~~~-- 293 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQ--------------------DENVALEACEFWLTLAEQP-------ICK--DVL-- 293 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCS--------------------SHHHHHHHHHHHHHHTTST-------THH--HHH--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCC--------------------cHHHHHHHHHHHHHHhcch-------hHH--HHH--
Confidence 999999999887777777665321 1245555655554331100 000 000
Q ss_pred CCcchhhhhhccCCCCcccccchhhhhhhhhhh-h-c----chhhhHHHHHhhHHHHHcc----CChhHHHHHHHHHhcc
Q 035871 712 PFTSDCIRIKNISSAPLYEQESSEDIKESAKAF-Q-S----GSEQWSEMIEKHMPLILQH----ISSMVRTAAVTCFAGI 781 (1127)
Q Consensus 712 ~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~-l----~~~~W~~iie~~Lp~~l~d----~~~~VRaaAc~cLa~I 781 (1127)
.|.+. .-+|.+ + + ....|.. .-...--.+ .+..+|.+|++||+.+
T Consensus 294 --------------~~~~~--------~l~p~ll~~l~~~e~d~~~~~---~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 294 --------------VRHLP--------KLIPVLVNGMKYSDIDIILLK---GDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp --------------TTTHH--------HHHHHHHHHTSCCHHHHHHHH---C------------CCCCHHHHHHHHHHHH
T ss_pred --------------HHHHH--------HHHHHHHHHcCCcHhHHHHhc---CCcccccccccccccchHHHHHHHHHHHH
Confidence 00000 000000 0 0 0000110 000000000 3457899999999987
Q ss_pred chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHH
Q 035871 782 TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASW 861 (1127)
Q Consensus 782 gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAW 861 (1127)
... ++++-...++. .+...++|+++.||.+|+++||.++-...- .-..++..+++.++..+.|++..||..|+|
T Consensus 349 a~~----~~~~~~~~l~~-~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~ 422 (852)
T 4fdd_A 349 ANV----YRDELLPHILP-LLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSITCW 422 (852)
T ss_dssp HHH----HGGGGHHHHHH-HHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHh----ccHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 532 34433444555 345667899999999999999999743221 111356888999999999999999999999
Q ss_pred HHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhH
Q 035871 862 ALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRW 940 (1127)
Q Consensus 862 ALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~ 940 (1127)
+||++++.+..... . ..-..++..|+ +..+|++ +||.+|++|||++.......- ...
T Consensus 423 ~l~~l~~~~~~~~~----~-----~~~~~ll~~L~----~~L~d~~~~vr~~a~~aL~~l~~~~~~~l---------~~~ 480 (852)
T 4fdd_A 423 TLSRYAHWVVSQPP----D-----TYLKPLMTELL----KRILDSNKRVQEAACSAFATLEEEACTEL---------VPY 480 (852)
T ss_dssp HHHHTHHHHHHSCT----T-----TTHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHGGGG---------GGG
T ss_pred HHHHHHHHhccchH----H-----HHHHHHHHHHH----HHHhCCCHHHHHHHHHHHHHHHHHhhHhh---------HhH
Confidence 99999987653211 1 22233444444 3455544 899999999999987665421 124
Q ss_pred HHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH---HhcCCChHHHHHHHHHhcCCCc-
Q 035871 941 LERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL---LRDSSNFKIRIQAAAALAVPSS- 1016 (1127)
Q Consensus 941 ~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l---l~~~~NFKVRi~AA~AL~~p~~- 1016 (1127)
.+.+++.|++++++.+.+..-.+..|+|.+...-.-.....++.+.+.+.|++. +.+ ..-++| .+..+|+....
T Consensus 481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d-~~~~~~-~~~~~l~~i~~~ 558 (852)
T 4fdd_A 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD-EDKDLF-PLLECLSSVATA 558 (852)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCT-TCTTHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccc-ccHHHH-HHHHHHHHHHHH
Confidence 688999999999877767666677778777632111111223456677777643 322 223344 56555543221
Q ss_pred -ccccCCchHHHHHHHHHHHHH
Q 035871 1017 -VSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1017 -R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
...+-.+.+.+...++..++.
T Consensus 559 ~g~~~~~~~~~i~~~~~~~l~~ 580 (852)
T 4fdd_A 559 LQSGFLPYCEPVYQRCVNLVQK 580 (852)
T ss_dssp HGGGGHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHH
Confidence 112223445566656666554
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.70 E-value=1.4e-14 Score=177.39 Aligned_cols=495 Identities=14% Similarity=0.133 Sum_probs=296.1
Q ss_pred hhhHHHHHHHHHHHHhhC-CccccccccccccCCCCCCCCcCccchhhhhhcCC-ChhHHHHHHHHHHHHhcCCchhhhh
Q 035871 391 SKVRVAALVCLQDLCRAD-PKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDP-CLKARMASASTLAAMLDGPSTVFLQ 468 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~-~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dp-s~KvR~aA~~~LsaLL~gsk~~llq 468 (1127)
.+||..+..+|..|++.+ |. +.|+.++|.- +. .+.++ ++.+|..|+.++..+.+...+.
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~---~~w~~ll~~L------------~~-~l~~~~~~~~r~~al~~l~~l~~~~~~~--- 169 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH---GAWPELMKIM------------VD-NTGAEQPENVKRASLLALGYMCESADPQ--- 169 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHH------------HH-HTSTTSCHHHHHHHHHHHHHHHHTSSTT---
T ss_pred hHHHHHHHHHHHHHHHhhCcc---cccHHHHHHH------------HH-HHhcCCCHHHHHHHHHHHHHHHHcCChh---
Confidence 468999999999999874 32 4798888653 22 34556 8899999999999888753211
Q ss_pred hhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhHhcccCCCCCC-CchHHHHHHHHHH
Q 035871 469 VAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRE-THDRLLASLFKILMPLISCTPYSRMPG-ELMPNLIISLRAR 546 (1127)
Q Consensus 469 ~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E-~~~~vLtqlLKcLa~LVq~TPY~RL~~-~Ll~~vv~~l~~~ 546 (1127)
.+ .|.++ +..+...|+..+.++ .+..+...++||+..++....- .+.. ...+.++..+...
T Consensus 170 -------~~--~~~~~-------~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~~ll~~l~~~ 232 (861)
T 2bpt_A 170 -------SQ--ALVSS-------SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-NMEREGERNYLMQVVCEA 232 (861)
T ss_dssp -------SS--TTGGG-------HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-HHTSHHHHHHHHHHHHHH
T ss_pred -------hh--HHHHH-------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-HccChhHHHHHHHHHHHH
Confidence 01 22222 233445556667775 3788999999999998754321 0110 0112344443333
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHH
Q 035871 547 IEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQAL 626 (1127)
Q Consensus 547 i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL 626 (1127)
+. + .+ ..++..++.||+.++...+.. +...+.+ .++..++.. -.+....+|.+|++++
T Consensus 233 ~~----~-~~-~~~r~~a~~~l~~l~~~~~~~--~~~~l~~-------------~l~~~~~~~-~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 233 TQ----A-ED-IEVQAAAFGCLCKIMSKYYTF--MKPYMEQ-------------ALYALTIAT-MKSPNDKVASMTVEFW 290 (861)
T ss_dssp HT----C-SC-HHHHHHHHHHHHHHHHHHGGG--CHHHHHH-------------THHHHHHHH-TTCSSHHHHHHHHHHH
T ss_pred hc----C-CC-HHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------------HHHHHHHHH-HcCCcHHHHHHHHHHH
Confidence 21 1 22 347888999998887654321 0000000 011111111 1234468999999999
Q ss_pred HHHHhhCh-----------------hhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHH
Q 035871 627 RAVSHNYP-----------------NIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDE 689 (1127)
Q Consensus 627 ~ala~~yp-----------------~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE 689 (1127)
..++...+ .....+...+...+...|+....++ ++.. ..+..+|.+.|+.
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~----------~d~~---~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDP----------EDDD---WNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccc----------cccc---CcHHHHHHHHHHH
Confidence 99887632 2334444444444444443221100 0100 1344556666665
Q ss_pred HHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChh
Q 035871 690 SLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSM 769 (1127)
Q Consensus 690 ~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~ 769 (1127)
+.... | ......+++ .+...+++.+..
T Consensus 358 l~~~~----~------------------------------------------------~~~~~~l~~-~l~~~l~~~~~~ 384 (861)
T 2bpt_A 358 FAQNC----G------------------------------------------------NHILEPVLE-FVEQNITADNWR 384 (861)
T ss_dssp HHHHH----G------------------------------------------------GGGHHHHHH-HHHHHTTCSSHH
T ss_pred HHHHc----c------------------------------------------------HhHHHHHHH-HHHHHcCCCChh
Confidence 53321 0 000112222 344566788899
Q ss_pred HHHHHHHHHhccchhHH-hhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc--cccccchHHHHHHHHHHHH
Q 035871 770 VRTAAVTCFAGITSSVF-FSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCF--PQVSQSAEIIDKFIHAVEI 846 (1127)
Q Consensus 770 VRaaAc~cLa~Igs~~f-~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~--p~L~~d~~fv~~ai~aLl~ 846 (1127)
+|.+|+.|||.|....- ..+ ...-..++.. +...++|+++.||.+|+++||.++.+ +.+. ...++...++.++.
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~-~~~l~~il~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQR-TYYVHQALPS-ILNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHH-HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-TTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHH-HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC-CHHHHHHHHHHHHH
Confidence 99999999999874321 111 1122345554 44778999999999999999999732 1111 13456888999999
Q ss_pred hcCCCCcchhchHHHHHHhhhhhhhh-cccccCCCCCCcccccHHHHHHHHHHHHhhcc--CC-chhhhhHHHHHhhhhh
Q 035871 847 NTHDPLVSVRITASWALANICDSIRH-CIDDFAFKPSIDSNANSHLMASLTESALNLTK--DG-DKIKSNAVRGLGNLSR 922 (1127)
Q Consensus 847 ~l~D~~~~VRikAAWALGNL~d~L~~-~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~--D~-DKVRsnAvRALGnLl~ 922 (1127)
.+.|+ ..||..|+|+|+++++.+.. ... .+. ..-+.++..| ++..+ |. +.||..|++++|.+..
T Consensus 462 ~l~~~-~~v~~~a~~al~~l~~~~~~~~~~--~l~-----~~~~~il~~L----~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 462 GLQDH-PKVATNCSWTIINLVEQLAEATPS--PIY-----NFYPALVDGL----IGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp HHTSC-HHHHHHHHHHHHHHHHHHSSSSSC--GGG-----GGHHHHHHHH----HHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HhccC-hHHHHHHHHHHHHHHHhcccccch--hhH-----HHHHHHHHHH----HHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 99887 99999999999999987541 000 011 1123334444 33444 43 5899999999999986
Q ss_pred ccccCCCCCCCCCCChhHHHHHHHHHHHhhcc---------------CCccchhhHHHHHHhhhccccccccCCCchhHH
Q 035871 923 FVKYTSSSHPASLGDSRWLERIVQALVSCVTT---------------GNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987 (1127)
Q Consensus 923 ~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~---------------~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v 987 (1127)
....+ .....+.+++.+++.+.. ....+|-.++.+|+++...-. ..-.++.+.+
T Consensus 530 ~~~~~---------~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l 598 (861)
T 2bpt_A 530 YATDT---------VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP--SSVEPVADML 598 (861)
T ss_dssp HCCGG---------GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG--GGTGGGHHHH
T ss_pred Hcchh---------hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHH
Confidence 65432 122355566666665542 245688999999999985421 1223577899
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHhcCCCc--ccccCCchHHHHHHHHHHHH
Q 035871 988 FSILLLLLRDSSNF-KIRIQAAAALAVPSS--VSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 988 ~~~Ll~ll~~~~NF-KVRi~AA~AL~~p~~--R~~yG~~~~~V~~~L~~aLe 1036 (1127)
++.++..+.+ .+. .||..+..+++.... ..++..+++.++..|...|+
T Consensus 599 ~~~l~~~l~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 649 (861)
T 2bpt_A 599 MGLFFRLLEK-KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN 649 (861)
T ss_dssp HHHHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 9999999965 445 899999888864321 12344456777777777774
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=6.1e-15 Score=172.24 Aligned_cols=446 Identities=12% Similarity=0.060 Sum_probs=270.2
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhcCCch-----hhhhh----hhhccc-cCCccccc---chHHH-HHHHHHHHHHHHHH
Q 035871 437 TCLLFDPCLKARMASASTLAAMLDGPST-----VFLQV----AEYKES-IKCGSFMP---LSTSY-GHIIMQLHNGIIYL 502 (1127)
Q Consensus 437 t~iL~Dps~KvR~aA~~~LsaLL~gsk~-----~llq~----AE~~es-~~~~SFTs---fS~tL-g~~l~eLHr~Ll~a 502 (1127)
..++.|+++.+|.+|+..|..+.....+ ++++. +++... .+..++.- +...+ ..+..++-..|...
T Consensus 93 ~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l 172 (588)
T 1b3u_A 93 ESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNL 172 (588)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3456899999999999999999876432 12221 111000 00011111 11111 12334555555555
Q ss_pred HhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHH
Q 035871 503 IQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVK 582 (1127)
Q Consensus 503 L~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~ 582 (1127)
+.+ .++.+...++++++.++...+-+. ..+.++..+...+ .+. + ..+|.+|+.+|+.+....++.. ..
T Consensus 173 ~~d-~~~~VR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~----~d~-~-~~vr~~a~~~l~~l~~~~~~~~-~~ 240 (588)
T 1b3u_A 173 CSD-DTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLA----SDE-Q-DSVRLLAVEACVNIAQLLPQED-LE 240 (588)
T ss_dssp HTC-SCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHH----TCS-C-HHHHTTHHHHHHHHHHHSCHHH-HH
T ss_pred hCC-CCHHHHHHHHHHHHHHHHHhcHHh----HHHHHHHHHHHHh----cCC-c-HHHHHHHHHHHHHHHHhCCHHH-HH
Confidence 554 577899999999999987754211 1122222222222 222 2 2477788888887766443211 11
Q ss_pred HHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCccc
Q 035871 583 QMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAK 662 (1127)
Q Consensus 583 ~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~ 662 (1127)
. .++..+.++. .+....+|..|.+.|..++...+.- .+...+...+.+++++ ++
T Consensus 241 ~-----------------~~~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d---~~--- 294 (588)
T 1b3u_A 241 A-----------------LVMPTLRQAA-EDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKD---CE--- 294 (588)
T ss_dssp H-----------------HTHHHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTC---SS---
T ss_pred H-----------------HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCC---Cc---
Confidence 0 1222222232 2344579999999999988754321 1223344555555532 11
Q ss_pred ccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhh
Q 035871 663 AWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAK 742 (1127)
Q Consensus 663 ~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~ 742 (1127)
..+..+|++.|.++.... |.. ..
T Consensus 295 --------------~~vr~~a~~~l~~~~~~~----~~~---------------------------~~------------ 317 (588)
T 1b3u_A 295 --------------AEVRAAASHKVKEFCENL----SAD---------------------------CR------------ 317 (588)
T ss_dssp --------------HHHHHHHHHHHHHHHHTS----CTT---------------------------TH------------
T ss_pred --------------HHHHHHHHHHHHHHHHHh----Chh---------------------------hh------------
Confidence 134555666666543211 000 00
Q ss_pred hhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHH
Q 035871 743 AFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAI 821 (1127)
Q Consensus 743 ~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RAL 821 (1127)
...++..++. .+...++|+++.||.+++.+|+.+... ++++. ...++. ++..+++|+++.||.+|+.+|
T Consensus 318 ----~~~~~~~l~p-~l~~~l~d~~~~vR~~a~~~l~~l~~~----~~~~~~~~~l~p-~l~~~l~d~~~~Vr~~a~~~l 387 (588)
T 1b3u_A 318 ----ENVIMSQILP-CIKELVSDANQHVKSALASVIMGLSPI----LGKDNTIEHLLP-LFLAQLKDECPEVRLNIISNL 387 (588)
T ss_dssp ----HHHHHHTHHH-HHHHHHTCSCHHHHHHHHTTGGGGHHH----HCHHHHHHHTHH-HHHHHHTCSCHHHHHHHHTTC
T ss_pred ----hhHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHH----hhHhHHHHHHHH-HHHHHhCCCchHHHHHHHHHH
Confidence 0012333333 344567899999999999999998532 22221 233444 445778999999999999999
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh
Q 035871 822 GVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN 901 (1127)
Q Consensus 822 Gvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~ 901 (1127)
|.++.. ++ ...+...+++.+...++|++..||..++.+|++++..+... .+.+.++..+ ++
T Consensus 388 ~~l~~~--~~-~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------------~~~~~l~~~l----~~ 448 (588)
T 1b3u_A 388 DCVNEV--IG-IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE------------FFDEKLNSLC----MA 448 (588)
T ss_dssp HHHHHH--SC-HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG------------GCCHHHHHHH----HH
T ss_pred HHHHHh--cC-HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH------------HHHHHHHHHH----HH
Confidence 998632 11 12234667788888899999999999999999999875421 2223333333 33
Q ss_pred hccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC
Q 035871 902 LTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED 980 (1127)
Q Consensus 902 a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~ 980 (1127)
..+|.+ .||..|+++||.+...+..+ ...+.+++.|.+.+.+.+..||-.|+.++|.+... + +.
T Consensus 449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~--~--~~ 513 (588)
T 1b3u_A 449 WLVDHVYAIREAATSNLKKLVEKFGKE-----------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--C--GQ 513 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCHH-----------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--H--HH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhCch-----------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--c--CH
Confidence 456766 69999999999998554321 12467888888888899999999999999998743 1 11
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCch
Q 035871 981 MDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF 1024 (1127)
Q Consensus 981 ~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~ 1024 (1127)
....+.+++.|...+. +++-.||.+|+.+|+.... .+|..+
T Consensus 514 ~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~--~~~~~~ 554 (588)
T 1b3u_A 514 DITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGP--ILDNST 554 (588)
T ss_dssp HHHHHHTHHHHHHGGG-CSCHHHHHHHHHHHHHHGG--GSCHHH
T ss_pred HHHHHHHHHHHHhhCC-CCCchHHHHHHHHHHHHHH--Hhchhh
Confidence 1245678899999985 5788999999999984432 345443
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.69 E-value=2.8e-15 Score=175.05 Aligned_cols=441 Identities=13% Similarity=0.095 Sum_probs=272.8
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.+|.+|..+|..++...+. .++..++ +++..++.|+++.||.+|++.+..+.+....-
T Consensus 141 ~~R~~a~~~l~~~~~~~~~---~~~~~l~-------------~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~------ 198 (588)
T 1b3u_A 141 TSRTSACGLFSVCYPRVSS---AVKAELR-------------QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD------ 198 (588)
T ss_dssp HHHHHHGGGHHHHTTTSCH---HHHHHHH-------------HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH------
T ss_pred HHHHHHHHHHHHHHHhcCH---HHHHHHH-------------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH------
Confidence 5788888888777654331 1222222 23445678999999999999999887653220
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
....++-..|...+.++ +..+...++++++.+....|-+ .+.+.++..+...+.
T Consensus 199 ------------------~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~--- 252 (588)
T 1b3u_A 199 ------------------NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE----DLEALVMPTLRQAAE--- 252 (588)
T ss_dssp ------------------HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH----HHHHHTHHHHHHHHT---
T ss_pred ------------------hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHcc---
Confidence 00112223344555554 4668888999999998876521 122333333333221
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH 631 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~ 631 (1127)
+. + ..+|.++..+|+.+...-++.. +.. .++..+++... +....+|..|.+.|..++.
T Consensus 253 -d~-~-~~vR~~a~~~l~~l~~~~~~~~-~~~-----------------~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 253 -DK-S-WRVRYMVADKFTELQKAVGPEI-TKT-----------------DLVPAFQNLMK-DCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp -CS-S-HHHHHHHHHTHHHHHHHHCHHH-HHH-----------------THHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred -CC-C-HHHHHHHHHHHHHHHHHhCccc-chh-----------------HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH
Confidence 22 2 2378888888888765322211 000 12222333322 3446799999999999998
Q ss_pred hChhhhh--hhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCcccccccccc
Q 035871 632 NYPNIMS--SYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLL 709 (1127)
Q Consensus 632 ~yp~l~~--~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~ 709 (1127)
..+.-.. .++..+...+.+++++. + .+++.++++.|.++....
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~d~---~-----------------~~vR~~a~~~l~~l~~~~--------------- 355 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVSDA---N-----------------QHVKSALASVIMGLSPIL--------------- 355 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCS---C-----------------HHHHHHHHTTGGGGHHHH---------------
T ss_pred HhChhhhhhHHHHHHHHHHHHHhcCC---C-----------------HHHHHHHHHHHHHHHHHh---------------
Confidence 7754321 34555555555554211 0 144444444433221110
Q ss_pred CCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhc
Q 035871 710 DNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSL 789 (1127)
Q Consensus 710 d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~L 789 (1127)
+.+ .+...++ ..+-..+.|+++.||.+++.+|+.+... +
T Consensus 356 --------------------~~~----------------~~~~~l~-p~l~~~l~d~~~~Vr~~a~~~l~~l~~~----~ 394 (588)
T 1b3u_A 356 --------------------GKD----------------NTIEHLL-PLFLAQLKDECPEVRLNIISNLDCVNEV----I 394 (588)
T ss_dssp --------------------CHH----------------HHHHHTH-HHHHHHHTCSCHHHHHHHHTTCHHHHHH----S
T ss_pred --------------------hHh----------------HHHHHHH-HHHHHHhCCCchHHHHHHHHHHHHHHHh----c
Confidence 000 0001111 1333567888999999999999987542 2
Q ss_pred chhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 790 LKET-QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 790 p~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
+.+. ...++..+ ..+.+|+++.||.+++.+||.+.. .++.+ .|....++.++..+.|++..||..|+.+||+++.
T Consensus 395 ~~~~~~~~~lp~l-~~~~~d~~~~vr~~~~~~l~~l~~--~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 395 GIRQLSQSLLPAI-VELAEDAKWRVRLAIIEYMPLLAG--QLGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470 (588)
T ss_dssp CHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHH--HHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHhcCCCchHHHHHHHHHHHHHH--HcCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 2221 23455533 466799999999999999999862 11111 1234677888889999999999999999999998
Q ss_pred hhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHH
Q 035871 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQA 947 (1127)
Q Consensus 869 ~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~a 947 (1127)
.+... ...+.++..| ....+|.+ .||..|+.++|.+...+..+ ...+.+++.
T Consensus 471 ~~~~~------------~~~~~llp~l----~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~~~~~~~~ 523 (588)
T 1b3u_A 471 KFGKE------------WAHATIIPKV----LAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------ITTKHMLPT 523 (588)
T ss_dssp HHCHH------------HHHHHTHHHH----HHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHTHHH
T ss_pred HhCch------------hHHHHHHHHH----HHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHH
Confidence 75321 1111223333 33445544 79999999999998654432 246788999
Q ss_pred HHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 948 LVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 948 Llk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
|++.+++.+..||.+|+.+||.+...- +.....+.+.+.|..+ .++++..||..|+.||+..
T Consensus 524 l~~~l~d~~~~Vr~~a~~~l~~l~~~~----~~~~~~~~~~p~l~~l-~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 524 VLRMAGDPVANVRFNVAKSLQKIGPIL----DNSTLQSEVKPILEKL-TQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHGGGS----CHHHHHHHHHHHHHHH-TTCSSHHHHHHHHHHHHHT
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHh----chhhhHHHHHHHHHHH-cCCCchhHHHHHHHHHHHh
Confidence 999999999999999999999998531 1111124567777775 5789999999999999743
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.67 E-value=1.9e-13 Score=167.61 Aligned_cols=500 Identities=13% Similarity=0.143 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCC--ChhHHHHHHHHHHHHhcCCchhhhhhhhh
Q 035871 395 VAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDP--CLKARMASASTLAAMLDGPSTVFLQVAEY 472 (1127)
Q Consensus 395 ~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dp--s~KvR~aA~~~LsaLL~gsk~~llq~AE~ 472 (1127)
..+..++..|++.+. ..++|+.++|.- +. .+.++ ++.+|..|+.++..+.+...+-.
T Consensus 107 ~~~~~~l~~i~~~~~--~~~~w~~ll~~l------------~~-~l~~~~~~~~~r~~al~~l~~l~~~~~~~~------ 165 (876)
T 1qgr_A 107 SSASQCVAGIACAEI--PVNQWPELIPQL------------VA-NVTNPNSTEHMKESTLEAIGYICQDIDPEQ------ 165 (876)
T ss_dssp CHHHHHHHHHHHHHG--GGTCCTTHHHHH------------HH-HHHCTTCCHHHHHHHHHHHHHHHHHSCHHH------
T ss_pred HHHHHHHHHHHHhhC--cccccHHHHHHH------------HH-HHhCCCCCHHHHHHHHHHHHHHHHhcCHhh------
Confidence 567888888888631 136787777643 23 44677 89999999999998876421110
Q ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHhHhcccCCCCCCC-chHHHHHHHHHHHhhc
Q 035871 473 KESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRET-HDRLLASLFKILMPLISCTPYSRMPGE-LMPNLIISLRARIEEG 550 (1127)
Q Consensus 473 ~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~-~~~vLtqlLKcLa~LVq~TPY~RL~~~-Ll~~vv~~l~~~i~~~ 550 (1127)
| ...+..+...|...+..+. +..+...++||+..++...+-+ +... ....++..+...+
T Consensus 166 --------~-------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~~il~~l~~~~--- 226 (876)
T 1qgr_A 166 --------L-------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FDKESERHFIMQVVCEAT--- 226 (876)
T ss_dssp --------H-------GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HTSHHHHHHHHHHHHHHT---
T ss_pred --------H-------HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHc---
Confidence 1 1223444555667777763 6778999999999988653210 1110 1112344333322
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHH
Q 035871 551 FPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVS 630 (1127)
Q Consensus 551 ~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala 630 (1127)
.+ .| ..++.+++.||+.++...+..- ...+ . ..++..++... .+....+|.+|++++..++
T Consensus 227 -~~-~~-~~vr~~a~~~l~~l~~~~~~~~--~~~~-----------~--~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 227 -QC-PD-TRVRVAALQNLVKIMSLYYQYM--ETYM-----------G--PALFAITIEAM-KSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp -TC-SS-HHHHHHHHHHHHHHHHHSGGGC--HHHH-----------T--TTHHHHHHHHH-TCSSHHHHHHHHHHHHHHH
T ss_pred -CC-CC-HHHHHHHHHHHHHHHHHhHHHH--HHHH-----------H--HHHHHHHHHHh-cCCchHHHHHHHHHHHHHH
Confidence 12 22 2478899999999887654221 0000 0 01222222222 2334578999999999888
Q ss_pred hhChhh---------------------hhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHH
Q 035871 631 HNYPNI---------------------MSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDE 689 (1127)
Q Consensus 631 ~~yp~l---------------------~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE 689 (1127)
...+.+ ...+...+...+.+.|.... +|.. ++. ..+..+|.+.|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~-~d~~--------~~~----~~~r~~a~~~l~~ 354 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD-ENDD--------DDD----WNPCKAAGVCLML 354 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC-SSCC--------TTC----CCHHHHHHHHHHH
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc-cccc--------ccc----cHHHHHHHHHHHH
Confidence 664221 11122222222222221100 0000 000 0223333444433
Q ss_pred HHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChh
Q 035871 690 SLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSM 769 (1127)
Q Consensus 690 ~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~ 769 (1127)
+.... +......++. .+...+.++++.
T Consensus 355 l~~~~----------------------------------------------------~~~~~~~~l~-~l~~~l~~~~~~ 381 (876)
T 1qgr_A 355 LATCC----------------------------------------------------EDDIVPHVLP-FIKEHIKNPDWR 381 (876)
T ss_dssp HHHHH----------------------------------------------------GGGGHHHHHH-HHHHHTTCSSHH
T ss_pred HHHHC----------------------------------------------------cHhhHHHHHH-HHHHHccCCChH
Confidence 32111 0011122332 344566788999
Q ss_pred HHHHHHHHHhccchhHH-hhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-ccccccchHHHHHHHHHHHHh
Q 035871 770 VRTAAVTCFAGITSSVF-FSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQSAEIIDKFIHAVEIN 847 (1127)
Q Consensus 770 VRaaAc~cLa~Igs~~f-~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~d~~fv~~ai~aLl~~ 847 (1127)
+|.+|+.||+.|....- ..+. ..-..++.. ++.+++|+++.||.+|+++||.++. ++.--....++..+++.++..
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~-~~~~~~l~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 459 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLK-PLVIQAMPT-LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHH-HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHH
Confidence 99999999999875321 1111 122335553 4467799999999999999999973 222111234678899999999
Q ss_pred cCCCCcchhchHHHHHHhhhhhhhhcc---------cccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHh
Q 035871 848 THDPLVSVRITASWALANICDSIRHCI---------DDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLG 918 (1127)
Q Consensus 848 l~D~~~~VRikAAWALGNL~d~L~~~~---------~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALG 918 (1127)
++|+ ..||..|+|+|+++++...... ....+.+ .-+.++..|++..-....++..+|..+..+||
T Consensus 460 l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~ 533 (876)
T 1qgr_A 460 LSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS-----SFELIVQKLLETTDRPDGHQNNLRSSAYESLM 533 (876)
T ss_dssp TTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT-----THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHH
T ss_pred HcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH-----hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHH
Confidence 9986 8999999999999998765110 0001121 22344555544321111123479999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc-----------CC----ccchhhHHHHHHhhhccccccccCCCc
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-----------GN----VKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~-----------~n----~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
.+.+....+ ...+.+..++.+++.+.. .+ ..+|-++|.+|+.+...-.- ..-.++
T Consensus 534 ~l~~~~~~~---------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~ 603 (876)
T 1qgr_A 534 EIVKNSAKD---------CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQI 603 (876)
T ss_dssp HHHHTCCST---------THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTT
T ss_pred HHHHHCchh---------hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHH
Confidence 998765431 233567777777777642 11 45788999999998754210 011256
Q ss_pred hhHHHHHHHHHHhcCCC-hHHHHHHHHHhcCCCc--ccccCCchHHHHHHHHHHHHH
Q 035871 984 APSVFSILLLLLRDSSN-FKIRIQAAAALAVPSS--VSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~~~N-FKVRi~AA~AL~~p~~--R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.+.+++.|+.++.+... -.||..|..+++.... ...+..++..++..+...|++
T Consensus 604 ~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 78899999999976532 3799999999874332 234555677788888888875
No 7
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.66 E-value=9.5e-16 Score=165.02 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=152.3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|...|.|+++.+|..|+.+|+.+|... ++..| ..+++|+++.||..|+++||.+.. +...+.
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~~-----------~~~~L-~~~l~d~~~~vR~~A~~aL~~l~~------~~~~~~ 89 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQD-----------AVRLA-IEFCSDKNYIRRDIGAFILGQIKI------CKKCED 89 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCHH-----------HHHHH-HHHHTCSSHHHHHHHHHHHHHSCC------CTTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCch-----------HHHHH-HHHHcCCCHHHHHHHHHHHHHhcc------ccccch
Confidence 445778999999999999999998532 33333 467799999999999999999842 111123
Q ss_pred HHHHHHH-HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 839 KFIHAVE-INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 839 ~ai~aLl-~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..++.+. ..++|++..||..|+|+||+++.... ...+..+..|.+ +.+|.+ .||..|+++
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--------------~~~~~~~~~L~~----~l~d~~~~vR~~a~~a 151 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNP--------------IYSPKIVEQSQI----TAFDKSTNVRRATAFA 151 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--------------GGHHHHHHHHHH----HTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--------------cccHHHHHHHHH----HhhCCCHHHHHHHHHH
Confidence 4444444 24689999999999999999985311 112233444433 345555 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||+++ + +.+++.|++.+.+.+..||+.|++|||++..+ .+.+++.|+.++.
T Consensus 152 L~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~~~L~~~l~ 202 (280)
T 1oyz_A 152 ISVIN---------------D----KATIPLLINLLKDPNGDVRNWAAFAININKYD----------NSDIRDCFVEMLQ 202 (280)
T ss_dssp HHTC----------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTT
T ss_pred HHhcC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC----------cHHHHHHHHHHhc
Confidence 99984 1 23678899999999999999999999998632 2568899999995
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+++..||..|+.+|+ .+|.. .++..|...|++
T Consensus 203 -d~~~~vR~~A~~aL~------~~~~~--~~~~~L~~~l~d 234 (280)
T 1oyz_A 203 -DKNEEVRIEAIIGLS------YRKDK--RVLSVLCDELKK 234 (280)
T ss_dssp -CSCHHHHHHHHHHHH------HTTCG--GGHHHHHHHHTS
T ss_pred -CCCHHHHHHHHHHHH------HhCCH--hhHHHHHHHhcC
Confidence 588999999999999 45543 577777777754
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.65 E-value=5.4e-14 Score=172.19 Aligned_cols=517 Identities=15% Similarity=0.170 Sum_probs=304.5
Q ss_pred hhhHHHHHHHHHHHHhhCC----ccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhh
Q 035871 391 SKVRVAALVCLQDLCRADP----KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVF 466 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~----K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~l 466 (1127)
..||+.|..+|...++..- ....++|...+|+.... .....|+.. +.++++++|..++++++.|....
T Consensus 55 ~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~---~ik~~ll~~-l~~~~~~vr~~~~~~l~~i~~~~---- 126 (861)
T 2bpt_A 55 LEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKN---QIKTNALTA-LVSIEPRIANAAAQLIAAIADIE---- 126 (861)
T ss_dssp HHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHH---HHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHH---HHHHHHHHH-HCCCchHHHHHHHHHHHHHHHhh----
Confidence 4699999999954433210 01234566534433211 123567775 56788999999999998874431
Q ss_pred hhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCC-CCCCCchHHHHHHHHH
Q 035871 467 LQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYS-RMPGELMPNLIISLRA 545 (1127)
Q Consensus 467 lq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~-RL~~~Ll~~vv~~l~~ 545 (1127)
.+.. . +. ++-..|+..+..+++..+....++++..++...+.+ |.-...++.++..+..
T Consensus 127 -----~p~~-~------w~--------~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~ 186 (861)
T 2bpt_A 127 -----LPHG-A------WP--------ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186 (861)
T ss_dssp -----GGGT-C------CH--------HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHH
T ss_pred -----Cccc-c------cH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHH
Confidence 0000 0 11 122335555666546677778889999888765432 1012345555555544
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHH
Q 035871 546 RIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQA 625 (1127)
Q Consensus 546 ~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQv 625 (1127)
.+.+ ......+|.+++.||+.++..-....+. .. ....++..+.+.. ++....+|..++++
T Consensus 187 ~l~~----~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~-------------~~~~ll~~l~~~~-~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 187 GAQS----TETSKAVRLAALNALADSLIFIKNNMER-EG-------------ERNYLMQVVCEAT-QAEDIEVQAAAFGC 247 (861)
T ss_dssp HHST----TCCCHHHHHHHHHHHHHHGGGCHHHHTS-HH-------------HHHHHHHHHHHHH-TCSCHHHHHHHHHH
T ss_pred hhcC----CCCCHHHHHHHHHHHHHHHHHHHHHccC-hh-------------HHHHHHHHHHHHh-cCCCHHHHHHHHHH
Confidence 4432 2101347889999998876421100000 00 0001222333322 23446899999999
Q ss_pred HHHHHhhChhhhhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccc
Q 035871 626 LRAVSHNYPNIMSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLL 704 (1127)
Q Consensus 626 L~ala~~yp~l~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~ 704 (1127)
|..++..||..+.+|.. .+...+...+.. . .+.+...|+..+..+.+....... . ..
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~---~-----------------~~~vr~~a~~~l~~l~~~~~~~~~-~-~~ 305 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIATMKS---P-----------------NDKVASMTVEFWSTICEEEIDIAY-E-LA 305 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHHTTC---S-----------------SHHHHHHHHHHHHHHHHHHHHHHH-H-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C-----------------cHHHHHHHHHHHHHHHHHHHhhhh-h-hh
Confidence 99999999988877777 665555444321 0 135666677776655443210000 0 00
Q ss_pred cccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHH---Hc-------cCChhHHHHH
Q 035871 705 DDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLI---LQ-------HISSMVRTAA 774 (1127)
Q Consensus 705 ~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~---l~-------d~~~~VRaaA 774 (1127)
+ + ...|..... +-...++.++|.+ +. +.++.+|.+|
T Consensus 306 ~----~-------------~~~~~~~~~-----------------~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 306 Q----F-------------PQSPLQSYN-----------------FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp H----C-------------TTCSCCCCC-----------------HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred h----c-------------cCCchhhHH-----------------HHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 0 0 000110000 0011122233333 22 2346899999
Q ss_pred HHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcc
Q 035871 775 VTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS 854 (1127)
Q Consensus 775 c~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~ 854 (1127)
+++|+.+... ++.+....++. .+...+.|.++.+|.+|+.+||.++....-..-..++..+++.++..+.|++..
T Consensus 352 ~~~L~~l~~~----~~~~~~~~l~~-~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 352 GACLQLFAQN----CGNHILEPVLE-FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHH----HGGGGHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHH----ccHhHHHHHHH-HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 9999987542 23333344555 345667899999999999999999732210111345677888899999999999
Q ss_pred hhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhcccc---CCCCC
Q 035871 855 VRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKY---TSSSH 931 (1127)
Q Consensus 855 VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~---~~~~~ 931 (1127)
||..|+|+||++++.+..... . ... +..++...++..+|+.+||.+|+.||+++.+.+.. +.+
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~----~----~~~----~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l-- 492 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESID----P----QQH----LPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPI-- 492 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSC----T----TTT----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGG--
T ss_pred HHHHHHHHHHHHHHHhhhhcC----C----HHH----HHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhh--
Confidence 999999999999998653211 0 112 33334444444577788999999999999877652 111
Q ss_pred CCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC-----------
Q 035871 932 PASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS----------- 998 (1127)
Q Consensus 932 ~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~----------- 998 (1127)
....+.+++.|++.+.+ .+..||..|+.|||.+.....- ...+....+++.++..+.+.
T Consensus 493 ------~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~ 564 (861)
T 2bpt_A 493 ------YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD--TVAETSASISTFVMDKLGQTMSVDENQLTLE 564 (861)
T ss_dssp ------GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG--GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred ------HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHHHHHHhhhcccCChh
Confidence 12468899999999974 4479999999999999864321 11234456677777777542
Q ss_pred ---CChHHHHHHHHHhcCCCc--ccccCCchHHHHHHHHHHHHH
Q 035871 999 ---SNFKIRIQAAAALAVPSS--VSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 999 ---~NFKVRi~AA~AL~~p~~--R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
....||..+..+|+.... ..++..+.+.++..++..|++
T Consensus 565 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence 245689999999863321 113334566788888888875
No 9
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.60 E-value=6.4e-15 Score=158.56 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=151.2
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|...+.|+++.||..|+.+|+.+|... .....++..+.-.+.+|+++.||.+|+++||.+.. .+..+.
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~~------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~-----~~~~~~ 126 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKICK------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCK-----KNPIYS 126 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCCT------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-----HCGGGH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-----cCCccc
Confidence 3446788999999999999999998421 11122333221134689999999999999999842 112223
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..+++.|...+.|++..||..|+|+||++++. .. +..|++. .+|.+ .||..|++|
T Consensus 127 ~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----------------~~----~~~L~~~----l~d~~~~vr~~a~~a 182 (280)
T 1oyz_A 127 PKIVEQSQITAFDKSTNVRRATAFAISVINDK----------------AT----IPLLINL----LKDPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------------CC----HHHHHHH----HTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH----------------HH----HHHHHHH----HcCCCHHHHHHHHHH
Confidence 57788999999999999999999999999862 11 2233332 34444 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++.. . .+.+++.|++.+++++..||++|+.|||+++. +.+++.|+.++.
T Consensus 183 L~~~~~-------------~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------~~~~~~L~~~l~ 233 (280)
T 1oyz_A 183 ININKY-------------D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLSVLCDELK 233 (280)
T ss_dssp HHHHTC-------------C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHHHHHHHHT
T ss_pred HHhhcc-------------C----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------HhhHHHHHHHhc
Confidence 999840 1 25688899999999999999999999999983 347889999997
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+ ++ ||..|+.||+ .+|.. .++..|...|++
T Consensus 234 d-~~--vr~~a~~aL~------~i~~~--~~~~~L~~~l~~ 263 (280)
T 1oyz_A 234 K-NT--VYDDIIEAAG------ELGDK--TLLPVLDTMLYK 263 (280)
T ss_dssp S-SS--CCHHHHHHHH------HHCCG--GGHHHHHHHHTT
T ss_pred C-cc--HHHHHHHHHH------hcCch--hhhHHHHHHHhc
Confidence 6 43 9999999999 45653 566667777754
No 10
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.59 E-value=4.7e-15 Score=151.89 Aligned_cols=180 Identities=27% Similarity=0.237 Sum_probs=142.3
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.+...+.++++.+|..|+.+|+.++... .+..| ..+++|+++.||..|+++||.+. .
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~-----------~~~~L-~~~l~~~~~~vr~~a~~~L~~~~------~----- 74 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPL-IKALKDEDAWVRRAAADALGQIG------D----- 74 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGG-----------GHHHH-HHHTTCSSHHHHHHHHHHHHHHC------C-----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChh-----------HHHHH-HHHHcCCCHHHHHHHHHHHHhhC------C-----
Confidence 4556889999999999999999998632 12223 35668999999999999999983 2
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..+++.|...+.|++..||..|+|+||++++. . .+..|++ +.+|.+ .||..|+++
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------------~----~~~~L~~----~l~d~~~~vr~~a~~a 130 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------------R----AVEPLIK----ALKDEDWFVRIAAAFA 130 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------------G----GHHHHHH----HTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------------H----HHHHHHH----HHcCCCHHHHHHHHHH
Confidence 24677888889999999999999999998753 1 1222333 234555 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++. + +.+++.|++.+.+.+..||..|+.|||+++. +.+++.|..++.
T Consensus 131 L~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~ 179 (201)
T 3ltj_A 131 LGEIG---------------D----ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHT---------------C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHH
T ss_pred HHHhC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHh
Confidence 99994 1 2467789999999999999999999999963 458889999995
Q ss_pred cCCChHHHHHHHHHhcCCCc
Q 035871 997 DSSNFKIRIQAAAALAVPSS 1016 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~ 1016 (1127)
+++..||..|+.||+...+
T Consensus 180 -d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 180 -TGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp -HCCHHHHHHHHHHHHHCC-
T ss_pred -CCCHHHHHHHHHHHHHHHh
Confidence 5889999999999985543
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=7.3e-13 Score=162.52 Aligned_cols=341 Identities=13% Similarity=0.113 Sum_probs=217.1
Q ss_pred hHHHHHhhhhcCC-CCchHhHHHHHHHHHHhhC-hhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhH
Q 035871 602 VLFTLLQCSERLA-SPAICFESLQALRAVSHNY-PNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKV 679 (1127)
Q Consensus 602 ~L~~Ll~~~~~~~-~~~vRlEAlQvL~ala~~y-p~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~ 679 (1127)
++..+++....+. ...+|..++++|..++..+ |.....|...+...+..+++.... ...+
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~------------------~~~v 190 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP------------------SNNV 190 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS------------------CHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCC------------------CHHH
Confidence 5555665554332 4678999999999999876 666667777666666666532100 1145
Q ss_pred HHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHH-HHHhh
Q 035871 680 VTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSE-MIEKH 758 (1127)
Q Consensus 680 ~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~-iie~~ 758 (1127)
+..|++.+..+.. +.+. .+. ...|.. +++ .
T Consensus 191 r~~a~~~l~~~~~----~~~~---------------------------~~~-----------------~~~~~~~il~-~ 221 (876)
T 1qgr_A 191 KLAATNALLNSLE----FTKA---------------------------NFD-----------------KESERHFIMQ-V 221 (876)
T ss_dssp HHHHHHHHHHHGG----GCHH---------------------------HHT-----------------SHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHH----HHHH---------------------------HHH-----------------hHHHHHHHHH-H
Confidence 5566676655421 1100 000 001111 222 3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc----------
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP---------- 828 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p---------- 828 (1127)
+...+++.+..+|..++.||+.+.......+...-...++. +++....|+++.||..|+..++.++...
T Consensus 222 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 300 (876)
T 1qgr_A 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH-HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccc
Confidence 44566788899999999999987654322222111113444 3446678999999999999998886431
Q ss_pred ----------ccccchHHHHHHHHHHHHhcC-------CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHH
Q 035871 829 ----------QVSQSAEIIDKFIHAVEINTH-------DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHL 891 (1127)
Q Consensus 829 ----------~L~~d~~fv~~ai~aLl~~l~-------D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~l 891 (1127)
....-..++...++.++..+. |.+.+||..|+.+|+.++..+.. .+-+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-------------~~~~~~ 367 (876)
T 1qgr_A 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHV 367 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------------GGHHHH
T ss_pred cccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-------------hhHHHH
Confidence 000001123556666766653 56789999999999999987541 122233
Q ss_pred HHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhh
Q 035871 892 MASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 892 L~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl 970 (1127)
+..+. ....|.+ +||..|+++||.++....++.+ ....+.+++.|++.+++.+.+||+.||++||++
T Consensus 368 l~~l~----~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~--------~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 368 LPFIK----EHIKNPDWRYRDAAVMAFGCILEGPEPSQL--------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp HHHHH----HHTTCSSHHHHHHHHHHHHHTSSSSCHHHH--------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHH----HHccCCChHHHHHHHHHHHHHHcCCCHHHH--------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33332 2344544 8999999999999743321110 124677899999999999999999999999999
Q ss_pred hccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcc----------------cccCCchHHHHHHHHHH
Q 035871 971 FLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSV----------------SDYGKSFSDVVQGLEHI 1034 (1127)
Q Consensus 971 ~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R----------------~~yG~~~~~V~~~L~~a 1034 (1127)
...-.-.....+....+++.|+..+.+ +-+||.+|+.||+..... ..+..+++.++..|...
T Consensus 436 ~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~ 513 (876)
T 1qgr_A 436 CELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET 513 (876)
T ss_dssp HHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH
T ss_pred HHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH
Confidence 854211111235678899999999965 389999999999743321 23566788888888877
Q ss_pred HHH
Q 035871 1035 LEN 1037 (1127)
Q Consensus 1035 Le~ 1037 (1127)
+..
T Consensus 514 l~~ 516 (876)
T 1qgr_A 514 TDR 516 (876)
T ss_dssp TTS
T ss_pred HhC
Confidence 764
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.56 E-value=1.2e-13 Score=156.57 Aligned_cols=344 Identities=17% Similarity=0.102 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHhc--CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhh
Q 035871 559 GLLVAAISCLTAALST--SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNI 636 (1127)
Q Consensus 559 al~VaaL~cL~avls~--~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l 636 (1127)
.++..|+.+|..+++. .++..+ ++ ...+.+..|++....+....+|.+|..+|..++.+.+..
T Consensus 35 ~~r~~A~~~L~~l~~~~~~~~~~~---~~------------~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 35 EQQLSATQKFRKLLSKEPNPPIDE---VI------------STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCHHH---HH------------TSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHH---HH------------HcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3677888999888763 222222 11 111466667766655546789999999999999876654
Q ss_pred hhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcc
Q 035871 637 MSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTS 715 (1127)
Q Consensus 637 ~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s 715 (1127)
...... .+...+.++|+. .+ ..++.+|+..|..+.... +
T Consensus 100 ~~~~~~~~~i~~L~~lL~~---~~-----------------~~vr~~a~~~L~~l~~~~---------~----------- 139 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSS---EF-----------------EDVQEQAVWALGNIAGDS---------T----------- 139 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHTTC---------H-----------
T ss_pred HHHHHhCCCHHHHHHHHcC---CC-----------------HHHHHHHHHHHHHHccCC---------H-----------
Confidence 432211 233344444321 11 145566666665442100 0
Q ss_pred hhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHcc-CChhHHHHHHHHHhccchhHHhhcchhHH
Q 035871 716 DCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQH-ISSMVRTAAVTCFAGITSSVFFSLLKETQ 794 (1127)
Q Consensus 716 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d-~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q 794 (1127)
.+. + ..++. .++. .|...+++ .+..+|..|+.||++|....-........
T Consensus 140 ------------~~~----~------~~~~~------~~i~-~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 190 (450)
T 2jdq_A 140 ------------MCR----D------YVLDC------NILP-PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190 (450)
T ss_dssp ------------HHH----H------HHHHT------TCHH-HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT
T ss_pred ------------HHH----H------HHHHC------CCHH-HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 000 0 00000 1112 23345554 67899999999999986321000001111
Q ss_pred HHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcc
Q 035871 795 EFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCI 874 (1127)
Q Consensus 795 ~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~ 874 (1127)
..++..+ ..+++++++.||..|+++|+.++....-.........+++.|+..+.|++..||..|+|+|+|++..-....
T Consensus 191 ~~~l~~L-~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 191 SPCLNVL-SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp GGGHHHH-HHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHH-HHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence 2344433 467789999999999999999974321000111112467888888999999999999999999986311000
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHH-HHHHHHHHHhh
Q 035871 875 DDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL-ERIVQALVSCV 952 (1127)
Q Consensus 875 ~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~-E~~i~aLlk~l 952 (1127)
. ..+....+..|++ ..++ ++.||..|+++||||...-.. .-.... ..+++.|++.+
T Consensus 270 ~---------~~~~~~~l~~L~~----ll~~~~~~vr~~a~~~L~~l~~~~~~---------~~~~~~~~~~l~~L~~~l 327 (450)
T 2jdq_A 270 Q---------VILNCSALQSLLH----LLSSPKESIKKEACWTISNITAGNRA---------QIQTVIDANIFPALISIL 327 (450)
T ss_dssp H---------HHHTTTHHHHHHH----HTTCSSHHHHHHHHHHHHHHTTSCHH---------HHHHHHHTTHHHHHHHHH
T ss_pred H---------HHHHCccHHHHHH----HHcCCCHHHHHHHHHHHHHHHcCCHH---------HHHHHHHCCCHHHHHHHH
Confidence 0 0011123344433 3444 448999999999999621100 000011 35778899999
Q ss_pred ccCCccchhhHHHHHHhhhcc--ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 953 TTGNVKVQWNVCRALSNLFLN--ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 953 ~~~n~KVRWNAc~ALGnl~~n--~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+++.+||.+||++|||+..+ +... ..-....+++.|+.++. +++.+||..|+.||.
T Consensus 328 ~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~ 386 (450)
T 2jdq_A 328 QTAEFRTRKEAAWAITNATSGGSAEQI--KYLVELGCIKPLCDLLT-VMDSKIVQVALNGLE 386 (450)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHTCHHHHHHGGG-SSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHHHH--HHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHH
Confidence 999999999999999999753 1110 00012347899999995 578999999999997
No 13
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.56 E-value=1.4e-14 Score=149.41 Aligned_cols=178 Identities=27% Similarity=0.238 Sum_probs=140.4
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|...+.|+++.+|..|+.+|+.+|... .+..| ..+++|+++.||..|+++||.+. + .
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~~~-----------~~~~L-~~~l~~~~~~vr~~a~~aL~~~~------~-----~ 80 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPL-IKALKDEDAWVRRAAADALGQIG------D-----E 80 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGG-----------GHHHH-HHHTTCSCHHHHHHHHHHHHHHC------C-----G
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCcc-----------HHHHH-HHHHcCCCHHHHHHHHHHHHhhC------C-----H
Confidence 345678999999999999999998632 12223 36678999999999999999983 2 2
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRAL 917 (1127)
.+++.|...+.|++..||..|+|+||++++. . .+..|++ +.+|.+ .||..|+++|
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------------~----~~~~L~~----~l~d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------------R----AVEPLIK----ALKDEDWFVRIAAAFAL 136 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------------G----GHHHHHH----HTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------------H----HHHHHHH----HHhCCCHHHHHHHHHHH
Confidence 4667788889999999999999999999853 1 1223333 235555 7999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
|++. + +.+++.|++.+++.+..||..|+.|||++.. +.+++.|..++.
T Consensus 137 ~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~- 184 (211)
T 3ltm_A 137 GEIG---------------D----ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAE- 184 (211)
T ss_dssp HHHC---------------C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHH-
T ss_pred HHcC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHh-
Confidence 9994 1 2367789999999999999999999999974 457889999986
Q ss_pred CCChHHHHHHHHHhcCCC
Q 035871 998 SSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~ 1015 (1127)
+++..||..|+.||+...
T Consensus 185 d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 185 TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HCCHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 578899999999998543
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.52 E-value=1.3e-12 Score=168.17 Aligned_cols=522 Identities=14% Similarity=0.174 Sum_probs=300.4
Q ss_pred hhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhh
Q 035871 391 SKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVA 470 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~A 470 (1127)
.+||.+|+.+|..+++..+. .||..++| .|+.. +.|+++.+|.+|+.+|..+.....+. +
T Consensus 62 ~~vR~~A~~~L~~l~~~~~~---~~~~~i~~------------~Ll~~-l~d~~~~vR~~a~~~L~~i~~~l~~~----~ 121 (1230)
T 1u6g_C 62 GEVQNLAVKCLGPLVSKVKE---YQVETIVD------------TLCTN-MLSDKEQLRDISSIGLKTVIGELPPA----S 121 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTSCH---HHHHHHHH------------HHHHH-TTCSSSHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHhCCH---HHHHHHHH------------HHHHH-hcCCcHHHHHHHHHHHHHHHHhCCCc----c
Confidence 47999999999998875332 34433332 33333 57899999999999998887643221 0
Q ss_pred hhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhc
Q 035871 471 EYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEG 550 (1127)
Q Consensus 471 E~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~ 550 (1127)
. . ..| ......++-..|+..+....+..+...++.++..++...|-. +.+ +++.++..+.+.+.+
T Consensus 122 ~---~---~~~------~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~-l~~-~~~~ll~~l~~~L~~- 186 (1230)
T 1u6g_C 122 S---G---SAL------AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL-LVN-FHPSILTCLLPQLTS- 186 (1230)
T ss_dssp --------CCT------HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS-CTT-THHHHHHHHGGGGGC-
T ss_pred c---c---cch------HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH-HHH-HHHHHHHHHHHHHcC-
Confidence 0 0 011 123445566667777764345678888999999998766532 222 456777666665532
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHH
Q 035871 551 FPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVS 630 (1127)
Q Consensus 551 ~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala 630 (1127)
. + ..+|..|+.+++.++...+.. . .+ .++..+++....+....+|..+++++..++
T Consensus 187 ---~-~-~~vR~~a~~al~~l~~~~~~~--~--------------~~---~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 187 ---P-R-LAVRKRTIIALGHLVMSCGNI--V--------------FV---DLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp ---S-S-HHHHHHHHHHHHHHTTTC--------------------CT---THHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred ---C-c-HHHHHHHHHHHHHHHHhcCHH--H--------------HH---HHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 1 2 348889999999888643221 0 00 133444444333333578999999999999
Q ss_pred hhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccC
Q 035871 631 HNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLD 710 (1127)
Q Consensus 631 ~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d 710 (1127)
...|..+.+|...+...+.+.+++. + +.+...+.+.++.+.+.. |.+. .
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~---~-----------------~~vR~~a~~~l~~l~~~~----~~~~-~------ 291 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVD---D-----------------DELREYCIQAFESFVRRC----PKEV-Y------ 291 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSC---C-----------------TTTHHHHHHHHHHHHHCT----TCCC-H------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCC---C-----------------HHHHHHHHHHHHHHHHHC----hHHH-H------
Confidence 9888877788887777777776421 1 123334455555444321 1110 0
Q ss_pred CCCcchhhhh--hccCCCCcccccchhhhhhhhhhhh---cchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhH
Q 035871 711 NPFTSDCIRI--KNISSAPLYEQESSEDIKESAKAFQ---SGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSV 785 (1127)
Q Consensus 711 ~~~~s~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~---l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~ 785 (1127)
|+..+.+.. ..+..+|.+..+..+. .....+ ........ +... ..-.+....||.+|++||+.+..
T Consensus 292 -~~l~~li~~ll~~l~~d~~~~~~~d~~---~~~~~~~~~~~~~~~~~--~~~~-~~~~d~~~~vR~~A~~~l~~l~~-- 362 (1230)
T 1u6g_C 292 -PHVSTIINICLKYLTYDPNYNYDDEDE---DENAMDADGGDDDDQGS--DDEY-SDDDDMSWKVRRAAAKCLDAVVS-- 362 (1230)
T ss_dssp -HHHHHHHHHHTTCCCCC------------------------------------------CTTHHHHHHHHHHHHHHT--
T ss_pred -HhHHHHHHHHHHHhCCCCCCCCccccc---ccccccccccccchhhc--cccc-ccccccCHHHHHHHHHHHHHHHH--
Confidence 000000000 0011122221000000 000000 00000000 0000 00113346799999999987543
Q ss_pred Hhhcch---hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc-----------c---c----chHHHHHHHHHH
Q 035871 786 FFSLLK---ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV-----------S---Q----SAEIIDKFIHAV 844 (1127)
Q Consensus 786 f~~Lp~---~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L-----------~---~----d~~fv~~ai~aL 844 (1127)
..|+ ..-..++.. +...++|.++.||.+|+.+|+.++..-.. . + -..++...++.+
T Consensus 363 --~~~~~~~~~~~~l~~~-l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 439 (1230)
T 1u6g_C 363 --TRHEMLPEFYKTVSPA-LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439 (1230)
T ss_dssp --TCCTTHHHHHTTTHHH-HHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHH
T ss_pred --hchhHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHH
Confidence 1121 111123443 34567899999999999999887521000 0 0 022445566677
Q ss_pred HHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc---hhhhhHHHHHhhhh
Q 035871 845 EINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD---KIKSNAVRGLGNLS 921 (1127)
Q Consensus 845 l~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D---KVRsnAvRALGnLl 921 (1127)
+..+.|++..||..+..+||.+...+... +.+ .+..++...+...+|.. .||..|+.+++.+.
T Consensus 440 ~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-------------l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGA-------------LTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTT-------------TGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHchhh-------------hHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 77799999999999999999998763211 111 24455555566667764 78999999999886
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc-cc----ccccCCCchhHHHHHHHHHHh
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN-ET----INLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n-~~----i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
.....+. ...+.+.+++.|++++.+.+.+||-.|..+++.+... .. -...-.++.+.+++.|+..+.
T Consensus 506 ~~~~~~~--------~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 577 (1230)
T 1u6g_C 506 CNHSPQV--------FHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577 (1230)
T ss_dssp HSSCGGG--------GHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS
T ss_pred HhCCHHH--------HHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHh
Confidence 4332211 1225677889999999999999999998899877632 00 000112456789999998884
Q ss_pred -cCCChHHHHHHHHHhcCCCcc--cccCCchHHHHHHHHHHHH
Q 035871 997 -DSSNFKIRIQAAAALAVPSSV--SDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 997 -~~~NFKVRi~AA~AL~~p~~R--~~yG~~~~~V~~~L~~aLe 1036 (1127)
.+.+..||.+|+.+||..... ..++.+++.++..|...|.
T Consensus 578 ~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 578 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK 620 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc
Confidence 457889999999999854421 2344567777777666654
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.50 E-value=8.3e-12 Score=160.83 Aligned_cols=502 Identities=14% Similarity=0.128 Sum_probs=286.7
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
++|..|+.+|..+++..++.+..|-+.++| .| -..+.|+++.||..|+.++..+.......+
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l~~~~~~ll~------------~l-~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----- 210 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLLVNFHPSILT------------CL-LPQLTSPRLAVRKRTIIALGHLVMSCGNIV----- 210 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCTTTHHHHHH------------HH-GGGGGCSSHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH------------HH-HHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-----
Confidence 699999999999998777655544433332 22 234578999999999999998876532211
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
|. . .+. .|+..|..+.+..+...+++|++.++...|. ++.+ +++.++..+...+.+
T Consensus 211 ---------~~---~----~l~----~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~-~l~~l~~~ll~~l~d-- 266 (1230)
T 1u6g_C 211 ---------FV---D----LIE----HLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGE-YLEKIIPLVVKFCNV-- 266 (1230)
T ss_dssp ---------CT---T----HHH----HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTT-SCTTHHHHHHHHHSS--
T ss_pred ---------HH---H----HHH----HHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HHHH-HHHHHHHHHHHHhcC--
Confidence 11 1 111 2333334433344566789999999888764 4432 344455444444432
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHhhhcCCCCCCC-----cchhHHHH-------------Hhhh-
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPA--PVQVKQMFLEEISAGSVEVDK-----RSGVLFTL-------------LQCS- 610 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~--~~eV~~~L~~e~ssg~~~~~~-----~s~~L~~L-------------l~~~- 610 (1127)
..+ .+|-.++.+++.+...-+. .+-+..++ +..-......+. ...+.... -.|.
T Consensus 267 --~~~--~vR~~a~~~l~~l~~~~~~~~~~~l~~li-~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1230)
T 1u6g_C 267 --DDD--ELREYCIQAFESFVRRCPKEVYPHVSTII-NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 341 (1230)
T ss_dssp --CCT--TTHHHHHHHHHHHHHCTTCCCHHHHHHHH-HHHTTCCCCC---------------------------------
T ss_pred --CCH--HHHHHHHHHHHHHHHHChHHHHHhHHHHH-HHHHHHhCCCCCCCCcccccccccccccccccchhhccccccc
Confidence 112 2677888888887765432 11111111 110000000000 00000000 0011
Q ss_pred hcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHH
Q 035871 611 ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDES 690 (1127)
Q Consensus 611 ~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~ 690 (1127)
+.+....+|..|.++|..++..+|..+.++...+...+...++ | . .+.+..++++.+..+
T Consensus 342 ~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-----d-----------~----~~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK-----E-----------R----EENVKADVFHAYLSL 401 (1230)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS-----C-----------S----SSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC-----C-----------C----chHHHHHHHHHHHHH
Confidence 1122346899999999999998886666666554433322221 1 0 125666777777777
Q ss_pred HHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhH
Q 035871 691 LRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMV 770 (1127)
Q Consensus 691 lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~V 770 (1127)
++......+ +.. +.+.+... ..+. ..-..+...+++..+ ..++++++.+
T Consensus 402 ~~~~~~~~~--~~~--------------------~~~~~~~~--~~~~------~~~~~~l~~ll~~l~-~~l~~~~~~v 450 (1230)
T 1u6g_C 402 LKQTRPVQS--WLC--------------------DPDAMEQG--ETPL------TMLQSQVPNIVKALH-KQMKEKSVKT 450 (1230)
T ss_dssp HHHHCCC----------------------------------C--CCHH------HHHHHHTTHHHHHHH-HHTTCSCHHH
T ss_pred HHHhccccc--ccc--------------------Cccccccc--cchH------HHHHHHhhHHHHHHH-HHhccCCHHH
Confidence 665421110 000 00000000 0000 000112223333222 3477889999
Q ss_pred HHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCH--hHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhc
Q 035871 771 RTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVA--SVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINT 848 (1127)
Q Consensus 771 RaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~--~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l 848 (1127)
|.++|.+|+.+-...-..+. ..-..++.. ++..++|+++ .||.+|+.+++.++..-.-..-..|+..+++.++..+
T Consensus 451 r~~~~~~L~~l~~~~~~~l~-~~l~~ll~~-l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 451 RQCCFNMLTELVNVLPGALT-QHIPVLVPG-IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHSTTTTG-GGHHHHHHH-HHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHchhhhH-HHHHHHHHH-HHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999986443111121 223445553 4577788764 8999999999988521100111336778889999999
Q ss_pred CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhc--cCCc-hhhhhHHHHHhhhhhccc
Q 035871 849 HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLT--KDGD-KIKSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 849 ~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~--~D~D-KVRsnAvRALGnLl~~l~ 925 (1127)
+|++..||..|.++++.++..+...... ....+. ..+..++...+... .|.+ .||.+|++++|.|.....
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~------~~~~~~-~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQP------SSFDAT-PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSC------CCCCCH-HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccc------cccchH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999876531000 001121 12334444433333 4444 799999999999986655
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHH
Q 035871 926 YTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRI 1005 (1127)
Q Consensus 926 ~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi 1005 (1127)
..-. .....+++.|...+.+. .+|.+++.|+|.+.... ....-.+|...+++.|+..+. +.|..+|.
T Consensus 602 ~~~~---------~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~-~~~~~~~~~~~i~~~L~~~l~-~~~~~~r~ 668 (1230)
T 1u6g_C 602 DNLG---------SDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSP-LKIDLRPVLGEGVPILASFLR-KNQRALKL 668 (1230)
T ss_dssp GGCC---------THHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCS-SCCCCHHHHHHHHHHHHHHTT-SCCHHHHH
T ss_pred chhh---------hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHH-hCCHHHHH
Confidence 4311 13577888888887643 48999999999988642 112234789999999999996 57899999
Q ss_pred HHHHHhcC
Q 035871 1006 QAAAALAV 1013 (1127)
Q Consensus 1006 ~AA~AL~~ 1013 (1127)
+|+.||+.
T Consensus 669 ~a~~al~~ 676 (1230)
T 1u6g_C 669 GTLSALDI 676 (1230)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.50 E-value=5.4e-12 Score=142.85 Aligned_cols=302 Identities=12% Similarity=0.108 Sum_probs=189.1
Q ss_pred hHHHHHhhhhcCC-CCchHhHHHHHHHHHHhhC-hhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhH
Q 035871 602 VLFTLLQCSERLA-SPAICFESLQALRAVSHNY-PNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKV 679 (1127)
Q Consensus 602 ~L~~Ll~~~~~~~-~~~vRlEAlQvL~ala~~y-p~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~ 679 (1127)
++..|++....+. ...+|..|+++|..++..+ |.....|...+...+..+|+.... ...+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~------------------~~~v 190 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP------------------SNNV 190 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC------------------CHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC------------------CHHH
Confidence 5566666554432 5679999999999999877 777777887777777777643210 1145
Q ss_pred HHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhH
Q 035871 680 VTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHM 759 (1127)
Q Consensus 680 ~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~L 759 (1127)
+.+|++.+..++. +. .+ +.. ...++..++. .+
T Consensus 191 r~~a~~~l~~~~~----~~----------------~~-------------------~~~--------~~~~~~~l~~-~l 222 (462)
T 1ibr_B 191 KLAATNALLNSLE----FT----------------KA-------------------NFD--------KESERHFIMQ-VV 222 (462)
T ss_dssp HHHHHHHHHHHTT----TT----------------HH-------------------HHT--------SHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHH----HH----------------HH-------------------hhh--------hhHHHHHHHH-HH
Confidence 5666666654310 00 00 000 0012333343 56
Q ss_pred HHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc-----------
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP----------- 828 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p----------- 828 (1127)
+..+.++++.+|..+|.||+.+....-..+..--...++. +++..++|+++.||..|+..++.++-..
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~ 301 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH-HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6777888999999999999998654322221111102344 3346678999999999999998886331
Q ss_pred --------cccc-chHHHHHHHHHHHHhcC-------CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHH
Q 035871 829 --------QVSQ-SAEIIDKFIHAVEINTH-------DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLM 892 (1127)
Q Consensus 829 --------~L~~-d~~fv~~ai~aLl~~l~-------D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL 892 (1127)
.... -..++...++.++..+. |.+..||..|+.+|+.++..+.. .+-+.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-------------~~~~~~~ 368 (462)
T 1ibr_B 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHVL 368 (462)
T ss_dssp CSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-------------THHHHHH
T ss_pred ccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-------------HHHHHHH
Confidence 1111 01134566677766653 45679999999999999987531 1222233
Q ss_pred HHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 893 ASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 893 ~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
..+ ....+|.+ ++|..|+++||.++.....+.+. ...+.+++.|+..+++.+.+||++||++||++.
T Consensus 369 ~~l----~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~--------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 369 PFI----KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK--------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HHH----HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC--------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHH----HHHhcCCChHHHHHHHHHHHHHhcCCcHHHHH--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 22344544 89999999999998543322211 124568999999999999999999999999997
Q ss_pred ccccccccCCCchhHHHHHHHHHH
Q 035871 972 LNETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 972 ~n~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
..-.-.....+..+.+++.|+..|
T Consensus 437 ~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 437 ELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HhcccccccHHHHHHHHHHHHHHh
Confidence 532111112345677777776655
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.50 E-value=7.5e-13 Score=149.92 Aligned_cols=400 Identities=14% Similarity=0.109 Sum_probs=229.0
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhHhc--ccC-CC-CCC-CchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 035871 498 GIIYLIQRETHDRLLASLFKILMPLISC--TPY-SR-MPG-ELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAAL 572 (1127)
Q Consensus 498 ~Ll~aL~~E~~~~vLtqlLKcLa~LVq~--TPY-~R-L~~-~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avl 572 (1127)
.|+..|+.+ +..+....+++|..+++. .|. .. +.. ++++.++..+ .+ ..+ ..++..+..+|+.+.
T Consensus 24 ~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L----~~----~~~-~~v~~~a~~~L~~l~ 93 (450)
T 2jdq_A 24 DMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFL----KR----KEN-CTLQFESAWVLTNIA 93 (450)
T ss_dssp HHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHH----TC----TTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHH----CC----CCC-HHHHHHHHHHHHHHh
Confidence 345556554 566888889999888752 222 11 123 6666666533 21 112 237778888998887
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHH
Q 035871 573 STSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKI 651 (1127)
Q Consensus 573 s~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~ 651 (1127)
...+.. ...+. ..+.+..|++.... ....+|.+|+.+|..++...+........ .+...+.++
T Consensus 94 ~~~~~~---~~~~~------------~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 94 SGNSLQ---TRIVI------------QAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp SSCHHH---HHHHH------------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHH---HHHHH------------hCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 643211 11111 12345556555543 35689999999999999887654432221 122333444
Q ss_pred HHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccc
Q 035871 652 LKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQ 731 (1127)
Q Consensus 652 L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~ 731 (1127)
++. + ....++..|+..|..+.+. . .|....
T Consensus 158 l~~----~---------------~~~~v~~~a~~~L~~l~~~----~---------------------------~~~~~~ 187 (450)
T 2jdq_A 158 FSK----Q---------------NRLTMTRNAVWALSNLCRG----K---------------------------SPPPEF 187 (450)
T ss_dssp TTS----C---------------CCHHHHHHHHHHHHHHHCC----S---------------------------SSCCCG
T ss_pred hcC----C---------------CCHHHHHHHHHHHHHHhCC----C---------------------------CCCCCH
Confidence 321 0 0124555666666544220 0 000000
Q ss_pred cchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCH
Q 035871 732 ESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVA 811 (1127)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~ 811 (1127)
. .+ ..++. .|...+.+.++.+|..|+.+|+++....-.....-....++..+ ..++.|+++
T Consensus 188 ~----------~~-------~~~l~-~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~ 248 (450)
T 2jdq_A 188 A----------KV-------SPCLN-VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL-VELLMHNDY 248 (450)
T ss_dssp G----------GT-------GGGHH-HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH-HHHTTCSCH
T ss_pred H----------HH-------HHHHH-HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH-HHHHCCCch
Confidence 0 00 01112 23345678889999999999999865321111000011244434 467789999
Q ss_pred hHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHH
Q 035871 812 SVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHL 891 (1127)
Q Consensus 812 ~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~l 891 (1127)
.||..|+++||+++....-......-..+++.|...+.+++..||..|+|+||||+..-..... ..+....
T Consensus 249 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~---------~~~~~~~ 319 (450)
T 2jdq_A 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ---------TVIDANI 319 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTH
T ss_pred hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------HHHHCCC
Confidence 9999999999999642110000000124678888899999999999999999999852100000 0011122
Q ss_pred HHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 892 MASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 892 L~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
+..|++.+ ..++++||.+|+.+|||+.....++.. .......+++.|++.+.+++.+||-+|++||+++.
T Consensus 320 l~~L~~~l---~~~~~~v~~~a~~~L~~l~~~~~~~~~-------~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 320 FPALISIL---QTAEFRTRKEAAWAITNATSGGSAEQI-------KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHHHH---HHSCHHHHHHHHHHHHHHHHHCCHHHH-------HHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHHHcCCCHHHH-------HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33333321 134458999999999999743221110 00112457889999999999999999999999998
Q ss_pred ccccccc-----cCCCchhHH-----HHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 972 LNETINL-----EDMDWAPSV-----FSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 972 ~n~~i~~-----~~~~wa~~v-----~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
....-.. ...+....+ ++.|..+ .+++|++||..|..+|.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-~~~~~~~v~~~a~~~l~ 439 (450)
T 2jdq_A 390 RLGEQEAKRNGTGINPYCALIEEAYGLDKIEFL-QSHENQEIYQKAFDLIE 439 (450)
T ss_dssp HHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHH-HCHHHHHHHHHHHHHHH
T ss_pred HhchhhhhccccchhHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHH
Confidence 6432100 001122222 3455554 46789999999999887
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.47 E-value=2.1e-12 Score=151.74 Aligned_cols=341 Identities=16% Similarity=0.105 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
++..|+.+|..+++... +...+ + ..+.+..|+++...+....+|.+|..+|..++.+.+...
T Consensus 103 ~~~~A~~~L~~ll~~~~~~~~~~~---~-------------~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 103 EQLSATVKFRQILSREHRPPIDVV---I-------------QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHHHHHTCCSSSCSHHHH---H-------------HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccHHHH---H-------------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 67788888988887642 22222 1 124667777776554457899999999999998776544
Q ss_pred hhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
..... .....+..+|+.. + ..+..+|+..|..+....
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~---~-----------------~~vr~~A~~aL~~l~~~~---------------------- 204 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTG---S-----------------VEVKEQAIWALGNVAGDS---------------------- 204 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHC---C-----------------HHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHCCCHHHHHHHHcCC---C-----------------HHHHHHHHHHHHHHhCCC----------------------
Confidence 32211 2234455555431 1 145556666665442100
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF 796 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~ 796 (1127)
|.+. + ..... .++. .|-.++++.++.+|..|+.||+++....=..........
T Consensus 205 ----------~~~~--------~--~~~~~------~~l~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 257 (530)
T 1wa5_B 205 ----------TDYR--------D--YVLQC------NAME-PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257 (530)
T ss_dssp ----------HHHH--------H--HHHHT------TCHH-HHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGG
T ss_pred ----------ccch--------H--HHHHc------CcHH-HHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHh
Confidence 0000 0 00000 1112 233556778899999999999997532100111111223
Q ss_pred HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccc
Q 035871 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDD 876 (1127)
Q Consensus 797 ~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~ 876 (1127)
++..| ..+++++++.||..|+++|+.++..+.-.-...+-..+++.|+..+.|++..||..|.|+||||+..-.....
T Consensus 258 ~l~~L-~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~- 335 (530)
T 1wa5_B 258 ALPTL-AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ- 335 (530)
T ss_dssp GHHHH-HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHH-HHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH-
Confidence 45433 4778899999999999999999742110000111124578888889999999999999999999852100000
Q ss_pred cCCCCCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHH-----HHHHHHHHH
Q 035871 877 FAFKPSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL-----ERIVQALVS 950 (1127)
Q Consensus 877 ~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~-----E~~i~aLlk 950 (1127)
..+....+..|++ ...+. ..||..|+++||||... +.... ..+++.|++
T Consensus 336 --------~~~~~~~l~~L~~----lL~~~~~~vr~~A~~aL~~l~~~-------------~~~~~~~~~~~~~l~~L~~ 390 (530)
T 1wa5_B 336 --------VVINAGVLPALRL----LLSSPKENIKKEACWTISNITAG-------------NTEQIQAVIDANLIPPLVK 390 (530)
T ss_dssp --------HHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHTTS-------------CHHHHHHHHHTTCHHHHHH
T ss_pred --------HHHHcchHHHHHH----HHcCCCHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHCCCHHHHHH
Confidence 0011122333333 34444 48999999999999631 11111 346778999
Q ss_pred hhccCCccchhhHHHHHHhhhccccc--cccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 951 CVTTGNVKVQWNVCRALSNLFLNETI--NLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 951 ~l~~~n~KVRWNAc~ALGnl~~n~~i--~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
.+.+++.+||.+||+||+|+.....- .....-....+++.|+.++. +++.+||..|+.||..
T Consensus 391 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~aL~~ 454 (530)
T 1wa5_B 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALEN 454 (530)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 99999999999999999999764110 00000012237889999995 5799999999999973
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.43 E-value=2.9e-12 Score=150.09 Aligned_cols=345 Identities=18% Similarity=0.126 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
++..|+..|..+++..+ +...+ + ..|.+..|+++...+....+|.+|..+|..++.+.+...
T Consensus 90 ~~~~A~~~L~~l~s~~~~~~~~~~---~-------------~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 90 LQLEATTQFRKLLSIERSPPIEEV---I-------------QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHH---H-------------HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHH---H-------------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 66788888888887654 22222 1 124566666666555447899999999999999877654
Q ss_pred hhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
..... .....+..+|+. .+ ..+..+|+..|..+... .+
T Consensus 154 ~~~~~~g~i~~L~~lL~~---~~-----------------~~v~~~a~~aL~~l~~~-----------------~~---- 192 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGS---SS-----------------DDVREQAVWALGNVAGD-----------------SP---- 192 (528)
T ss_dssp HHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHHT-----------------CH----
T ss_pred HHHHhCCcHHHHHHHhcC---CC-----------------HHHHHHHHHHHHHHhCC-----------------Ch----
Confidence 43322 122333444321 11 14555566665543210 00
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH-ccCChhHHHHHHHHHhccchhHHhhcchhHHH
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL-QHISSMVRTAAVTCFAGITSSVFFSLLKETQE 795 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l-~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~ 795 (1127)
.+. . ...+. .++. .|...+ .+.++.+|..|+.+|+++.... ..-......
T Consensus 193 -----------~~~--------~--~i~~~------g~l~-~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~ 243 (528)
T 4b8j_A 193 -----------KCR--------D--LVLAN------GALL-PLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTR 243 (528)
T ss_dssp -----------HHH--------H--HHHHT------TCHH-HHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHT
T ss_pred -----------hhH--------H--HHHHC------CcHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHH
Confidence 000 0 00000 0111 222344 4667899999999999986432 111111223
Q ss_pred HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc
Q 035871 796 FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCID 875 (1127)
Q Consensus 796 ~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~ 875 (1127)
.++..| ..++++.++.||..|+++|+.++..+.-.....+-..+++.|+..+.+++..||..|+|+||||+..-.....
T Consensus 244 ~~l~~L-~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 244 PALPAL-ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp THHHHH-HHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHH-HHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 355544 4778999999999999999999743221111111124578888899999999999999999999963111000
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc
Q 035871 876 DFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT 954 (1127)
Q Consensus 876 ~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~ 954 (1127)
..+....+..|++.+ ..+ ++.||..|+.+||||...-.. . -.......+++.|++.+.+
T Consensus 323 ---------~~~~~~~l~~L~~lL---~~~~~~~v~~~A~~~L~nl~~~~~~-~-------~~~~~~~~~i~~L~~lL~~ 382 (528)
T 4b8j_A 323 ---------CIIDHQALPCLLSLL---TQNLKKSIKKEACWTISNITAGNKD-Q-------IQAVINAGIIGPLVNLLQT 382 (528)
T ss_dssp ---------HHHTTTHHHHHHHHH---HSCCCHHHHHHHHHHHHHHHTSCHH-H-------HHHHHHTTCHHHHHHHHHH
T ss_pred ---------HHHHhhhHHHHHHHH---cCCCcHHHHHHHHHHHHHHHCCCHH-H-------HHHHHHCCCHHHHHHHHhc
Confidence 011112234443321 234 568999999999999731000 0 0000122567889999999
Q ss_pred CCccchhhHHHHHHhhhcc--ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 955 GNVKVQWNVCRALSNLFLN--ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 955 ~n~KVRWNAc~ALGnl~~n--~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
++.+||-+||+||+|+..+ +... ..-....+++.|+.++. +++.+||..|..+|+..
T Consensus 383 ~~~~v~~~a~~aL~nl~~~~~~~~~--~~l~~~~~i~~L~~lL~-~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 383 AEFDIKKEAAWAISNATSGGSHDQI--KYLVSEGCIKPLCDLLI-CPDIRIVTVCLEGLENI 441 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHH--HHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHH--HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999865 1110 00011346889999995 58899999999999844
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.41 E-value=1.3e-12 Score=137.31 Aligned_cols=231 Identities=19% Similarity=0.102 Sum_probs=150.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-ccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~d~~fv 837 (1127)
+...++++++.+|..||.+|.++-+..-.....-....++..| ..+++++++.||..|+++||+++. .+..+ +...-
T Consensus 17 ~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~ 94 (252)
T 4db8_A 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQI-QAVID 94 (252)
T ss_dssp HHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-HHGGGCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHH-HHHHcCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHH
Confidence 3356788999999999999987654321110000011244544 477889999999999999999964 12221 11111
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..+++.|+..+.+++..||..|+|+|+||+..-..... ..+....+..| ++..++.+ +||.+|+.+
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L----~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ---------AVIDAGALPAL----VQLLSSPNEQILQEALWA 161 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHH----HHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH---------HHHHCCCHHHH----HHHHhCCCHHHHHHHHHH
Confidence 23678899999999999999999999999863111000 00111123333 33455545 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||||...-+.. ........+++.|++.+.+++.+||-+||.+|+|+..+..-... .-....+++.|+.++.
T Consensus 162 L~~l~~~~~~~--------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 162 LSNIASGGNEQ--------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHTTSCHHH--------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHTTTT
T ss_pred HHHHHcCChHH--------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCcHHHHHHHhC
Confidence 99996211100 00001234688999999999999999999999999843211000 0011237888999995
Q ss_pred cCCChHHHHHHHHHhcCC
Q 035871 997 DSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p 1014 (1127)
+.+.+||..|+.+|+..
T Consensus 233 -~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 233 -HENEKIQKEAQEALEKL 249 (252)
T ss_dssp -CSSSHHHHTHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHHHH
Confidence 57889999999999854
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.41 E-value=1.8e-12 Score=135.06 Aligned_cols=231 Identities=19% Similarity=0.126 Sum_probs=152.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc-cccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCF-PQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv 837 (1127)
|...++++++.+|..|+.+|+++....-.....-....++..+ ..+++++++.||..|+++||+++.. +..+. ...-
T Consensus 7 L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~ 84 (252)
T 4hxt_A 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVL-VKLLTSTDSEVQKEAARALANIASGPDEAIK-AIVD 84 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH-HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHH-HHHHhCCCHHHHHHHHHHHHHHHcCChHHHH-HHHH
Confidence 4456788889999999999999854321000000011245544 4778999999999999999999753 22211 1112
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRA 916 (1127)
...++.++..+.+++..||..|+|+|+|++..-..... ..+....+..|++ ..++. ++||.+|+++
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L~~----~l~~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK---------AIVDAGGVEVLVK----LLTSTDSEVQKEAARA 151 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHH----HTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------HHHHCCCHHHHHH----HHcCCCHHHHHHHHHH
Confidence 24678888999999999999999999999952111000 0011112334433 34444 4899999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc-ccccccCCCchhHHHHHHHHHH
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN-ETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n-~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
||||...-+.. ........+++.|++.+.+++.+||.+|+++|+|+... +... ..-....+++.|+.++
T Consensus 152 L~~l~~~~~~~--------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 152 LANIASGPDEA--------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI--KAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHTTSCHHH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH--HHHHHTTHHHHHHHGG
T ss_pred HHHHHcCCHHH--------HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHCCCHHHHHHHH
Confidence 99996211100 00011234789999999999999999999999999863 2111 0001123689999999
Q ss_pred hcCCChHHHHHHHHHhcCCC
Q 035871 996 RDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 996 ~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
. +++.+||..|+.+|+...
T Consensus 222 ~-~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 222 T-STDSEVQKEAQRALENIK 240 (252)
T ss_dssp G-CSCHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHHH
Confidence 5 578899999999998443
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.41 E-value=7.5e-12 Score=147.03 Aligned_cols=231 Identities=15% Similarity=0.105 Sum_probs=142.6
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.++.++++.||..||.+|+++....-.....-....++.. +..++.++++.||..|+++||+++....-.....+-..+
T Consensus 264 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~-Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 342 (530)
T 1wa5_B 264 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR-LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 342 (530)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH-HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH-HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch
Confidence 4556778889999999999875321000000000123443 347778999999999999999997421100001111246
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNL 920 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnL 920 (1127)
++.|+..+.+++..||..|+|+|+||+..-...... .+....+..|++.+ ...+++||..|+.||||+
T Consensus 343 l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~---------~~~~~~l~~L~~lL---~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA---------VIDANLIPPLVKLL---EVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH---------HHHTTCHHHHHHHH---HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH---------HHHCCCHHHHHHHH---hcCCHHHHHHHHHHHHHH
Confidence 788888999999999999999999998521100000 00011233333321 234558999999999999
Q ss_pred hhcccc--CCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccccc-----ccCCCchhH-----HH
Q 035871 921 SRFVKY--TSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN-----LEDMDWAPS-----VF 988 (1127)
Q Consensus 921 l~~l~~--~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~-----~~~~~wa~~-----v~ 988 (1127)
...... +.. ....-..+++.|+..+.+++.+||-+|+.||++++....-. ....+.... .+
T Consensus 411 ~~~~~~~~~~~-------~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 411 SSGGLQRPDII-------RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHTTTCTHHH-------HHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HhcCCCcHHHH-------HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 754322 110 00012347889999999999999999999999998643210 000111111 24
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhc
Q 035871 989 SILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 989 ~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+.|..+ .+++|..||..|..+|.
T Consensus 484 ~~L~~L-~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 484 EKIFNC-QQNENDKIYEKAYKIIE 506 (530)
T ss_dssp HHHHGG-GGCSCHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHH
Confidence 455554 47789999999999986
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.40 E-value=1.6e-10 Score=130.83 Aligned_cols=261 Identities=13% Similarity=0.060 Sum_probs=168.1
Q ss_pred HHHHHccC--ChhHHHHHHHHHhccchhHHhhcchh-HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccch
Q 035871 759 MPLILQHI--SSMVRTAAVTCFAGITSSVFFSLLKE-TQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSA 834 (1127)
Q Consensus 759 Lp~~l~d~--~~~VRaaAc~cLa~Igs~~f~~Lp~~-~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~ 834 (1127)
+-..++|+ ++.||..|+.|++++..-.-..++.+ .+.+++.. +.....|+++.||.+|+++|+.++ .+|..-.
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-- 253 (462)
T 1ibr_B 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV-VCEATQCPDTRVRVAALQNLVKIMSLYYQYME-- 253 (462)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT--
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33567777 78999999999998532110111111 23455553 446678999999999999999987 3333211
Q ss_pred HHHH-HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcc---cccC--CCCC--CcccccHHHHHHHHHHHHhhcc--
Q 035871 835 EIID-KFIHAVEINTHDPLVSVRITASWALANICDSIRHCI---DDFA--FKPS--IDSNANSHLMASLTESALNLTK-- 904 (1127)
Q Consensus 835 ~fv~-~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~---~~~~--~~~~--~~~~is~~lL~~L~e~aL~a~~-- 904 (1127)
.++. .+++.++..+.|.+..||..|.+.++++++...... .+.. ..+. ....+....+..++..+++...
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~ 333 (462)
T 1ibr_B 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (462)
T ss_dssp TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc
Confidence 1234 566667777889999999999999999998642110 0000 0000 0001111123334443333332
Q ss_pred ------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccc
Q 035871 905 ------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINL 978 (1127)
Q Consensus 905 ------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~ 978 (1127)
|+..+|..|+.+||.+...+.. .....+++.+...+++.+.++|..|++|||.+.......
T Consensus 334 d~d~~~~~~~~r~~a~~~L~~l~~~~~~------------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~- 400 (462)
T 1ibr_B 334 DENDDDDDWNPCKAAGVCLMLLATCCED------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS- 400 (462)
T ss_dssp CSSCCTTCCSHHHHHHHHHHHHHHHTTT------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH-
Confidence 1227999999999999865541 235678888888899999999999999999998642200
Q ss_pred cCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCccc--cc--CCchHHHHHHHHHHHH
Q 035871 979 EDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVS--DY--GKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 979 ~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~--~y--G~~~~~V~~~L~~aLe 1036 (1127)
.-.+..+.+++.|+..+. +++.+||..|+.+|+...... .. ..+++.+..+|+.+|+
T Consensus 401 ~~~~~l~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTCTTTTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 012345789999999995 588999999999998544211 11 2467777777776664
No 24
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.39 E-value=1.3e-12 Score=133.79 Aligned_cols=160 Identities=28% Similarity=0.314 Sum_probs=126.9
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~ 882 (1127)
+..++|+++.||..|+++||.+. . ..+++.|+..+.|++..||..|+|+||++++.-
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~------~-----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~------------ 76 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIG------D-----ERAVEPLIKALKDEDAWVRRAAADALGQIGDER------------ 76 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHC------C-----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG------------
T ss_pred HHHhcCCCHHHHHHHHHHHHhcC------C-----hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH------------
Confidence 36679999999999999999883 2 246788888899999999999999999998531
Q ss_pred CcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh
Q 035871 883 IDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961 (1127)
Q Consensus 883 ~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW 961 (1127)
. +..|++ +.+|.+ .||..|+++||++. + +.+++.|++.+.+.+..||.
T Consensus 77 ---~-----~~~L~~----~l~d~~~~vr~~a~~aL~~~~---------------~----~~~~~~L~~~l~d~~~~vr~ 125 (201)
T 3ltj_A 77 ---A-----VEPLIK----ALKDEDGWVRQSAAVALGQIG---------------D----ERAVEPLIKALKDEDWFVRI 125 (201)
T ss_dssp ---G-----HHHHHH----HTTCSSHHHHHHHHHHHHHHC---------------C----GGGHHHHHHHTTCSSHHHHH
T ss_pred ---H-----HHHHHH----HHcCCCHHHHHHHHHHHHHhC---------------c----HHHHHHHHHHHcCCCHHHHH
Confidence 1 222332 234444 79999999999984 2 23677888999999999999
Q ss_pred hHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 962 NVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 962 NAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.|+.|||++... .+++.|+.++. +++..||..|+.||+ .+|. +.++..|...|++
T Consensus 126 ~a~~aL~~~~~~------------~~~~~L~~~l~-d~~~~vr~~A~~aL~------~~~~--~~~~~~L~~~l~d 180 (201)
T 3ltj_A 126 AAAFALGEIGDE------------RAVEPLIKALK-DEDGWVRQSAADALG------EIGG--ERVRAAMEKLAET 180 (201)
T ss_dssp HHHHHHHHHTCG------------GGHHHHHHHTT-CSSHHHHHHHHHHHH------HHCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCH------------HHHHHHHHHHc-CCCHHHHHHHHHHHH------HhCc--hhHHHHHHHHHhC
Confidence 999999999753 36788999995 588999999999999 4564 3677777777765
No 25
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.35 E-value=2.9e-12 Score=132.12 Aligned_cols=159 Identities=28% Similarity=0.330 Sum_probs=125.1
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSI 883 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~ 883 (1127)
..++|+++.||..|+++||.+. . ..+++.|+..+.|++..||..|+|+||++++.
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~------~-----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-------------- 80 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIG------D-----ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------------- 80 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC------C-----GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--------------
T ss_pred HHHcCCCHHHHHHHHHHHHHhC------C-----ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------------
Confidence 5578999999999999999983 2 25678888889999999999999999999852
Q ss_pred cccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhh
Q 035871 884 DSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWN 962 (1127)
Q Consensus 884 ~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWN 962 (1127)
.. +..|++ +.+|.| .||..|+++||++. + ..+++.|++.+.+.+..||..
T Consensus 81 --~~----~~~L~~----~l~~~~~~vr~~a~~aL~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~ 131 (211)
T 3ltm_A 81 --RA----VEPLIK----ALKDEDGWVRQSAAVALGQIG---------------D----ERAVEPLIKALKDEDWFVRIA 131 (211)
T ss_dssp --GG----HHHHHH----HTTCSSHHHHHHHHHHHHHHC---------------C----GGGHHHHHHHTTCSSHHHHHH
T ss_pred --HH----HHHHHH----HHcCCCHHHHHHHHHHHHHhC---------------c----HHHHHHHHHHHhCCCHHHHHH
Confidence 11 222322 234544 79999999999994 2 236788999999999999999
Q ss_pred HHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 963 VCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 963 Ac~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
|+.|||++... .+++.|..++ ++++..||..|+.||+ .+|. +.+...|...|++
T Consensus 132 a~~aL~~~~~~------------~~~~~L~~~l-~d~~~~vr~~a~~aL~------~~~~--~~~~~~L~~~l~d 185 (211)
T 3ltm_A 132 AAFALGEIGDE------------RAVEPLIKAL-KDEDGWVRQSAADALG------EIGG--ERVRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHCCG------------GGHHHHHHHT-TCSSHHHHHHHHHHHH------HHCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH------------HHHHHHHHHH-cCCCHHHHHHHHHHHH------HhCc--hhHHHHHHHHHhC
Confidence 99999999753 3678899988 5688999999999999 3553 3566666666654
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.29 E-value=5.5e-12 Score=129.24 Aligned_cols=188 Identities=18% Similarity=0.120 Sum_probs=126.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
.|..+++++++.+|..||.+|+++.... .+.+. .++.. +..+++++++.||..|+++||+++....-..
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGG-----NEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHH-HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCCHHH-HHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 5556788999999999999999986322 12222 24443 4477899999999999999999963111111
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-Cchhhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKS 911 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRs 911 (1127)
+..+-...++.|+..+++++..||..|+|+|+||+..-..... ..+....+..|++ ..++ +++||.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L~~----ll~~~~~~v~~ 156 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ---------AVIDAGALPALVQ----LLSSPNEQILQ 156 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHH----HTTCSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHH---------HHHHcCcHHHHHH----HHcCCCHHHHH
Confidence 1111123678888999999999999999999999952110000 0011122344443 3444 458999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
+|+.+|+|+...-+.. ........+++.|++.+.+++.+||.+|+.||+++-.
T Consensus 157 ~a~~aL~~l~~~~~~~--------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 157 EALWALSNIASGGNEQ--------KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHTSCHHH--------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCcHH--------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999997321100 0001123578899999999999999999999999864
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.29 E-value=7.3e-10 Score=133.83 Aligned_cols=482 Identities=14% Similarity=0.103 Sum_probs=268.2
Q ss_pred hhhHHHHHHHHHHHHhhCC-ccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhh
Q 035871 391 SKVRVAALVCLQDLCRADP-KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQV 469 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~-K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~ 469 (1127)
..||..|+.+|..+++..+ |. .++-... .-+.|+..|-.++++.+|..|+.+|..|-.... .-..+
T Consensus 28 ~~vr~~A~~~L~~La~~~~~~~------~i~~~~~------~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i 94 (644)
T 2z6h_A 28 QVVVNKAAVMVHQLSKKEASRH------AIMRSPQ------MVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAI 94 (644)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHH------HHTTCHH------HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhHH------HHHhccC------hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHH
Confidence 4799999999999998644 21 1110000 113555656556789999999999987654421 11111
Q ss_pred hhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCC---CCCchHHHHHHHHHH
Q 035871 470 AEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRM---PGELMPNLIISLRAR 546 (1127)
Q Consensus 470 AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL---~~~Ll~~vv~~l~~~ 546 (1127)
.+ . ..=..|+..|..+ +..+...++.+|..|....+-.+- ..|.++.++..
T Consensus 95 ~~---~------------------g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l---- 148 (644)
T 2z6h_A 95 FK---S------------------GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL---- 148 (644)
T ss_dssp HT---T------------------THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG----
T ss_pred HH---c------------------CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH----
Confidence 11 0 1123455666664 577899999999999888653332 25666666653
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHH
Q 035871 547 IEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQAL 626 (1127)
Q Consensus 547 i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL 626 (1127)
+... +. .++.++..+|..+.... ++....+.+ .+.+..|++.........++..+..+|
T Consensus 149 L~~~----~~--~~~~~a~~~L~~La~~~---~~~~~~i~~------------~g~v~~Lv~lL~~~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 149 LNKT----NV--KFLAITTDCLQILAYGN---QESKLIILA------------SGGPQALVNIMRTYTYEKLLWTTSRVL 207 (644)
T ss_dssp GGCC----CH--HHHHHHHHHHHHHHTTC---HHHHHHHHH------------TTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HCcC----CH--HHHHHHHHHHHHHHhcC---cHHHHHHHH------------cCChHHHHHHHHcCChHHHHHHHHHHH
Confidence 3221 11 25666667777766432 222222211 123444444443333345677788888
Q ss_pred HHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccc
Q 035871 627 RAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDD 706 (1127)
Q Consensus 627 ~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~ 706 (1127)
..++. ++........ ..++..+++..... ...++..+..+|..+.+..
T Consensus 208 ~nLs~-~~~~~~~l~~--~g~l~~L~~ll~~~-----------------~~~~~~~a~~~L~nL~~~~------------ 255 (644)
T 2z6h_A 208 KVLSV-CSSNKPAIVE--AGGMQALGLHLTDP-----------------SQRLVQNCLWTLRNLSDAA------------ 255 (644)
T ss_dssp HHHTT-CTTHHHHHHH--TTHHHHHHTTTTCS-----------------CHHHHHHHHHHHHHHGGGC------------
T ss_pred HHHhc-CcccHHHHHH--CCCHHHHHHHHhcC-----------------CHHHHHHHHHHHHHHhhcc------------
Confidence 88875 3333321111 11222232221110 1245555566665442210
Q ss_pred cccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHH
Q 035871 707 KLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVF 786 (1127)
Q Consensus 707 ~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f 786 (1127)
+.... . ..++. .|...+.++++.+|..||.+|+++....
T Consensus 256 --------------------~~~~~--~-----------------~~~i~-~Lv~lL~~~d~~v~~~a~~aL~~L~~~~- 294 (644)
T 2z6h_A 256 --------------------TKQEG--M-----------------EGLLG-TLVQLLGSDDINVVTCAAGILSNLTCNN- 294 (644)
T ss_dssp --------------------TTCCS--C-----------------HHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHTTC-
T ss_pred --------------------hhhhh--h-----------------hhHHH-HHHHHHcCCCHHHHHHHHHHHHHHHcCC-
Confidence 00000 0 12222 3445677889999999999999986431
Q ss_pred hhcchhHHHH-----HHHHHHhhhccC-C-CHhHHHHHHHHHhhhhcccccc---cchHHHHHHHHHHHHhcCCCC-cch
Q 035871 787 FSLLKETQEF-----IISSLIDSALHD-D-VASVRSAACRAIGVISCFPQVS---QSAEIIDKFIHAVEINTHDPL-VSV 855 (1127)
Q Consensus 787 ~~Lp~~~q~~-----~i~~Lll~~~~D-e-~~~VRaAA~RALGvlv~~p~L~---~d~~fv~~ai~aLl~~l~D~~-~~V 855 (1127)
.+.+.. .+..|+ .++.+ + .+.||..|+++||+++....-. .....-...++.|...+.+++ ..|
T Consensus 295 ----~~~~~~v~~~g~v~~Lv-~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 295 ----YKNKMMVCQVGGIEALV-RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp ----HHHHHHHHHTTHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred ----HHHHHHHHHcCCHHHHH-HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 111221 344343 44443 3 3799999999999997421100 000111246788888888876 599
Q ss_pred hchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh-----------------hcc--CCchhhhhHHHH
Q 035871 856 RITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN-----------------LTK--DGDKIKSNAVRG 916 (1127)
Q Consensus 856 RikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~-----------------a~~--D~DKVRsnAvRA 916 (1127)
|..|+|+|+||+..-... . ..+....+..|++.+-. .+. ..+.|+.+|++|
T Consensus 370 ~~~a~~~L~nLa~~~~~~-~---------~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~a 439 (644)
T 2z6h_A 370 IKATVGLIRNLALCPANH-A---------PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439 (644)
T ss_dssp HHHHHHHHHHHTTSGGGH-H---------HHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHH-H---------HHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHH
Confidence 999999999998531100 0 01111223333332111 011 234678888888
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccccc--ccCCCchhHHHHHHHHH
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN--LEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~--~~~~~wa~~v~~~Ll~l 994 (1127)
|++|.+.-.. ........+++.|++.+.+++.+||-+|+.+|+++..++... +...+ .++.|..+
T Consensus 440 L~~La~~~~~---------~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g----~l~~L~~l 506 (644)
T 2z6h_A 440 LHILARDVHN---------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG----ATAPLTEL 506 (644)
T ss_dssp HHHHTTSHHH---------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHhcCHHH---------HHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcC----ChhHHHHH
Confidence 8888632100 000112346789999999999999999999999998654321 11111 35677777
Q ss_pred HhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHh
Q 035871 995 LRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
+ +++|-+||..|+.||+...... +..|...| + ++.++.+
T Consensus 507 l-~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~-~-~~il~~~ 545 (644)
T 2z6h_A 507 L-HSRNEGVATYAAAVLFRMSEDK--PQDYKKRL-S-VELTSSL 545 (644)
T ss_dssp T-TCSCHHHHHHHHHHHHHHTTTS--CHHHHHHH-H-HHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHHHhccC--cHhhhccc-c-hHHHHHH
Confidence 7 5689999999999998543211 22254444 2 5666665
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.29 E-value=2.3e-10 Score=142.08 Aligned_cols=447 Identities=11% Similarity=0.062 Sum_probs=249.9
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 035871 439 LLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKI 518 (1127)
Q Consensus 439 iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKc 518 (1127)
-|.+|+..+|.++++.+..+ .+ + .+....-..|+..|.. .+..+...++++
T Consensus 123 ~L~~~~~~~r~~a~~~l~~~-~~--------~-------------------~i~~g~ip~Lv~lL~~-~d~~vr~~A~~~ 173 (780)
T 2z6g_A 123 RLAEPSQMLKHAVVNLINYQ-DD--------A-------------------ELATRAIPELTKLLND-EDQVVVNKAAVM 173 (780)
T ss_dssp ---CCSCHHHHHHHHHHHHH-HH--------H-------------------HHHHHHHHHHHHHHHC-SCHHHHHHHHHH
T ss_pred HhcCccHHHHHHHHHHHHhh-hH--------H-------------------HHHhCCHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45678899999988887622 00 0 0112233445555554 467788899999
Q ss_pred HHHhHhcccCCC-C--CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCC
Q 035871 519 LMPLISCTPYSR-M--PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVE 595 (1127)
Q Consensus 519 La~LVq~TPY~R-L--~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~ 595 (1127)
|..|...-+..+ + .++.++.++.. +... .|. .++..|..+|..+... + +....+.
T Consensus 174 L~~L~~~~~~~~~i~~~~~~i~~Lv~~----L~~~----~d~-~vr~~Aa~aL~~Ls~~-~---~~~~~i~--------- 231 (780)
T 2z6g_A 174 VHQLSKKEASRHAIMRSPQMVSAIVRT----MQNT----NDV-ETARCTSGTLHNLSHH-R---EGLLAIF--------- 231 (780)
T ss_dssp HHHHHTSHHHHHHHTTCHHHHHHHHHH----HHHC----CCH-HHHHHHHHHHHHHHTS-H---HHHHHHH---------
T ss_pred HHHHhCCChhHHHHHhccChHHHHHHH----HcCC----CCH-HHHHHHHHHHHHHhCC-c---hhHHHHH---------
Confidence 999876543211 1 12344444443 3322 122 2566777778774332 1 1111111
Q ss_pred CCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccc
Q 035871 596 VDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGF 674 (1127)
Q Consensus 596 ~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l 674 (1127)
..+.+..|+.+...+ ...+|.+|+.+|..++.+++........ .....+.++|+. .+
T Consensus 232 ---~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~---~~--------------- 289 (780)
T 2z6g_A 232 ---KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TN--------------- 289 (780)
T ss_dssp ---HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CC---------------
T ss_pred ---HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc---CC---------------
Confidence 114556666665433 4679999999999999988765543321 223334444421 10
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHH
Q 035871 675 IGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEM 754 (1127)
Q Consensus 675 ~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~i 754 (1127)
.++...+...|. .+.- +..+ ... ...+. ..
T Consensus 290 --~~v~~~a~~aL~----~La~--~~~e------------------------------~~~------~i~~~------~~ 319 (780)
T 2z6g_A 290 --VKFLAITTDCLQ----ILAY--GNQE------------------------------SKL------IILAS------GG 319 (780)
T ss_dssp --HHHHHHHHHHHH----HHHT--TCHH------------------------------HHH------HHHTT------TH
T ss_pred --HHHHHHHHHHHH----HHhc--CChH------------------------------HHH------HHHHc------CC
Confidence 123322333322 2210 0000 000 00010 11
Q ss_pred HHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc
Q 035871 755 IEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFP 828 (1127)
Q Consensus 755 ie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p 828 (1127)
++ .|..++++.+ ..++..++.+|.++.... +.+. .++.. +..++.+.++.++..|+++|+.++...
T Consensus 320 i~-~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~------~~~~~i~~~g~l~~-Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 320 PQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVEAGGMQA-LGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HH-HHHHHHTTCCCHHHHHHHHHHHHHHHTST------THHHHHHHTTHHHH-HGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHHhhcCh------HHHHHHHHhchHHH-HHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 22 2334556655 456678888888875321 1122 23443 447778889999999999999997433
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch
Q 035871 829 QVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK 908 (1127)
Q Consensus 829 ~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK 908 (1127)
.-... ...+++.|+..+++++..||..|+|+|+||+..-..+... .+....+..|++.+. ...+.+.
T Consensus 392 ~~~~~---~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~---------i~~~g~i~~Lv~lL~-~~~~~~~ 458 (780)
T 2z6g_A 392 TKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM---------VCQVGGIEALVRTVL-RAGDRED 458 (780)
T ss_dssp TTCSC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH---------HHTTTHHHHHHHHHH-HHTTCHH
T ss_pred hhhhh---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH---------HHHCCCHHHHHHHHH-ccCCHHH
Confidence 21111 2578899999999999999999999999998631110000 011122444444321 1234458
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCc-cchhhHHHHHHhhhccccccccCCCchhHH
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNV-KVQWNVCRALSNLFLNETINLEDMDWAPSV 987 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~-KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v 987 (1127)
||..|+++||||...-..... .........+++.|++.+.+++. +||-+||++|+|+..++.... .-....+
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~-----~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~--~i~~~g~ 531 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEM-----AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA--PLREQGA 531 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHH-----HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH--HHHHTTH
T ss_pred HHHHHHHHHHHHHhcCchHHH-----HHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH--HHHHCCC
Confidence 999999999999521110000 00001123457889999988775 999999999999986543220 0011347
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhc
Q 035871 988 FSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 988 ~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
++.|+.++.+ .+++||..|+.|++.- ....|....+|..+.+.+|.++.
T Consensus 532 i~~Lv~lL~~-~~~~~~~~aa~al~nq--~~~~~~~~~~v~~~a~~aL~~La 580 (780)
T 2z6g_A 532 IPRLVQLLVR-AHQDTQRRTSMGGTQQ--QFVEGVRMEEIVEACTGALHILA 580 (780)
T ss_dssp HHHHHHHHHH-HHHHHHHTTC--------CCSTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-cchhHHHHHhhccccc--hhhcccChHHHHHHHHHHHHHHh
Confidence 8999999964 7899999999998751 12335556778888888998874
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.28 E-value=4.7e-11 Score=122.28 Aligned_cols=190 Identities=19% Similarity=0.119 Sum_probs=126.3
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
.+..+++++++.||..|+++|+.++....-......-..+++.|+..+.+++..||..|+|+|+||+..-......
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~---- 91 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA---- 91 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH----
Confidence 3457789999999999999999996321111111111246788999999999999999999999998421000000
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
.+....+..|++ ..++.+ .||.+|+.+|+||...-... ........+++.|++.+++++.+|
T Consensus 92 -----i~~~g~i~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~~i~~L~~ll~~~~~~v 154 (210)
T 4db6_A 92 -----VIDAGALPALVQ----LLSSPNEQILQEALWALSNIASGGNEQ--------IQAVIDAGALPALVQLLSSPNEQI 154 (210)
T ss_dssp -----HHHTTCHHHHHH----HTTCSCHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred -----HHHCCCHHHHHH----HHcCCcHHHHHHHHHHHHHHHcCCHHH--------HHHHHHcCcHHHHHHHHcCCCHHH
Confidence 000011333333 345444 89999999999996211100 000112447899999999999999
Q ss_pred hhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 960 QWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
|.+||+||+|+..+..-.. ..-....+++.|+.++. +++.+||..|+.||+.
T Consensus 155 ~~~a~~aL~~l~~~~~~~~-~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQS-HENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHH-HHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 9999999999986521100 00011247889999995 6899999999999973
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.26 E-value=2.8e-11 Score=141.67 Aligned_cols=227 Identities=15% Similarity=0.158 Sum_probs=150.1
Q ss_pred HHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc
Q 035871 759 MPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
|...+.+++ +.+|..|+.||++|.... .+.+. .++.. +..+++++++.||..|+++||+++....-..
T Consensus 122 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~~~~~~~~~~g~i~~-L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 122 FVQFLTREDFPQLQFEAAWALTNIASGT-----SENTKVVIDHGAVPI-FVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHH-HHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCC-----HHHHHHHHhCCcHHH-HHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 334667776 999999999999987532 11222 24443 4477889999999999999999963211101
Q ss_pred chHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh
Q 035871 833 SAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK 910 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR 910 (1127)
+...-..+++.|+..+ .+++..||..|+|+|+|++..-.. . ........+..| +.+..+.| .|+
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~-------~---~~~~~~~~l~~L----~~lL~~~~~~v~ 261 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ-------P---SFEQTRPALPAL----ARLIHSNDEEVL 261 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC-------C---CHHHHTTHHHHH----HHHTTCCCHHHH
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-------C---cHHHHHHHHHHH----HHHHCCCCHHHH
Confidence 1111123578888888 788999999999999999974200 0 001111223333 33445444 899
Q ss_pred hhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHH
Q 035871 911 SNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSI 990 (1127)
Q Consensus 911 snAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~ 990 (1127)
.+|+.+|++|...-... -....-..+++.|++.+.+++..||.+|+.+|||+.....-... .-....+++.
T Consensus 262 ~~a~~aL~~l~~~~~~~--------~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~-~~~~~~~l~~ 332 (528)
T 4b8j_A 262 TDACWALSYLSDGTNDK--------IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ-CIIDHQALPC 332 (528)
T ss_dssp HHHHHHHHHHTSSCHHH--------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHTTTHHHH
T ss_pred HHHHHHHHHHHcCCHHH--------HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH-HHHHhhhHHH
Confidence 99999999996211100 00001124678999999999999999999999999864321100 0011347899
Q ss_pred HHHHHhcCCChHHHHHHHHHhcCC
Q 035871 991 LLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 991 Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
|+.++.+..+..||..|+.+|+..
T Consensus 333 L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 333 LLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Confidence 999997654899999999999854
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.25 E-value=1.7e-10 Score=136.08 Aligned_cols=347 Identities=15% Similarity=0.118 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
.+..|...+.-++|.+. |..+|- +.|.++.|+++...+....++.||..+|..++.+.+...
T Consensus 73 ~q~~a~~~~rklls~e~~ppi~~ii----------------~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 73 SQLQATQAARKLLSREKQPPIDNII----------------RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHH----------------HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHH----------------HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 44456666666676543 333331 246788888887766667899999999999998877655
Q ss_pred hhhHHH-HHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQQ-VSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~~-l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
....+. ....+.++|+. .+ ..+..+|+..|..+.. |.+
T Consensus 137 ~~vv~~GaIp~Lv~lL~s---~~-----------------~~v~e~A~~aL~nLa~-----------------d~~---- 175 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLAS---PH-----------------AHISEQAVWALGNIAG-----------------DGS---- 175 (510)
T ss_dssp HHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHT-----------------TCH----
T ss_pred HHHHHCCCHHHHHHHHcC---CC-----------------HHHHHHHHHHHHHHHh-----------------CCH----
Confidence 433331 22334444421 11 1455556666654421 000
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-----hhHHHHHHHHHhccchhHHhhcch
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-----SMVRTAAVTCFAGITSSVFFSLLK 791 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-----~~VRaaAc~cLa~Igs~~f~~Lp~ 791 (1127)
.++ + ...+.+ .++ .|...+..++ ..+.+.++.+|+++....-...+.
T Consensus 176 -----------~~r--------~--~v~~~G------~i~-~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 227 (510)
T 3ul1_B 176 -----------AFR--------D--LVIKHG------AID-PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227 (510)
T ss_dssp -----------HHH--------H--HHHHTT------CHH-HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred -----------HHH--------H--HHHHcC------ChH-HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence 000 0 000111 011 2223344332 345667778888753321111111
Q ss_pred hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 792 ~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
.....++..| ..+++++++.|+..|+++|+.++..+.-......-..+++.|...+.+++..|+..|+++||||+..--
T Consensus 228 ~~~~~~lp~L-~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 228 DAVEQILPTL-VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 2223455544 477899999999999999999964332111110012346778888899999999999999999974210
Q ss_pred hcccccCCCCCCcccccHHHHHHHHHHHHhhc-cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHH
Q 035871 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLT-KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVS 950 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~-~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk 950 (1127)
..... .+....+..| ..+. ..++.||..|+.+|+||...-... ........+++.|+.
T Consensus 307 ~~~~~---------i~~~g~l~~L----~~LL~~~~~~v~~~A~~aL~nl~a~~~~~--------~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 307 EQTQK---------VIDAGALAVF----PSLLTNPKTNIQKEATWTMSNITAGRQDQ--------IQQVVNHGLVPFLVG 365 (510)
T ss_dssp HHHHH---------HHHTTGGGGC----C-CTTCSSHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHH
T ss_pred HHHHH---------HhhccchHHH----HHHhcCCCHHHHHHHHHHHHHHHcCcHHH--------HHHHHhcCCHHHHHH
Confidence 00000 0000001111 1122 455689999999999996211100 001112357788999
Q ss_pred hhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 951 CVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 951 ~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
.+.+++.+||-+||+||+|+..+.+......=...-+++.|+.+| ++++-+|+..+..||...
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 999999999999999999997542211000001123678999999 568999999999999743
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.25 E-value=5.7e-11 Score=124.86 Aligned_cols=188 Identities=18% Similarity=0.132 Sum_probs=126.7
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
|...++++++.+|..|+.+|+++.... .+.+. .++.. +..+++++++.||..|+++||+++..+..+.+
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH-HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCHHH-HHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 446678888999999999999987521 11122 24443 44778899999999999999999754433312
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-Cchhhhh
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSN 912 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsn 912 (1127)
...-..+++.|+..+.+++..||..|+|+|+||+..-...... .+....+..|++ ..++ +++||.+
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~---------~~~~~~i~~L~~----ll~~~~~~v~~~ 199 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA---------VIDAGALPALVQ----LLSSPNEQILQE 199 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH---------HHHTTCHHHHHH----GGGCSSHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH---------HHHCCCHHHHHH----HHCCCCHHHHHH
Confidence 2222347889999999999999999999999999631110000 000112333333 3444 4489999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
|+++||||...-+.. .....-..+++.|++.+.+++.+||.+||.+|+|+.++
T Consensus 200 a~~~L~~l~~~~~~~--------~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 200 ALWALSNIASGGNEQ--------KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHHHHHhcCCHHH--------HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 999999996211100 00011234788899999999999999999999998753
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.24 E-value=1.1e-10 Score=137.70 Aligned_cols=227 Identities=17% Similarity=0.156 Sum_probs=142.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
|-.++.++++.++..||.||+++.... .+.... ++..| ..++.+.++.|+..|+++||+++....-...
T Consensus 237 L~~LL~~~~~~v~~~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~L-v~lL~~~~~~v~~~al~aL~nl~~~~~~~~~ 310 (510)
T 3ul1_B 237 LVRLLHHNDPEVLADSCWAISYLTDGP-----NERIEMVVKKGVVPQL-VKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310 (510)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSC-----HHHHHHHHTTTCHHHH-HHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhch-----hhhHHHHHhcccchhh-hhhhcCCChhhhhHHHHHHHHhhcCCHHHHH
Confidence 445678889999999999999986432 222222 23333 3677889999999999999999642111000
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhH
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNA 913 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnA 913 (1127)
...-..+++.|...+.+++..||..|+|+|+||+..-..... ..+....+..|++.+ ...+.+||.+|
T Consensus 311 ~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~---------~v~~~g~i~~Lv~lL---~~~~~~v~~~A 378 (510)
T 3ul1_B 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ---------QVVNHGLVPFLVGVL---SKADFKTQKEA 378 (510)
T ss_dssp HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHHHH---HSSCHHHHHHH
T ss_pred HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH---------HHHhcCCHHHHHHHH---cCCCHHHHHHH
Confidence 000112334455668899999999999999999853111000 011112233443321 23445899999
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC-CCchhHHHH---
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED-MDWAPSVFS--- 989 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~-~~wa~~v~~--- 989 (1127)
+.||+|+...-+.+.. ....-..+|+.|++.++..+.+++-++..||.|+++-..- .+. ... ...|.
T Consensus 379 a~aL~Nl~~~~~~~~~-------~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~-~~~~~~~-~~~iee~g 449 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQI-------VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK-LGETEKL-SIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHCCHHHH-------HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT-TTCHHHH-HHHHHHTT
T ss_pred HHHHHHHHccCCHHHH-------HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh-ccchHHH-HHHHHHcC
Confidence 9999999743322210 0001234688999999999999999999999999853110 010 001 11121
Q ss_pred --HHHHHHhcCCChHHHHHHHHHhc
Q 035871 990 --ILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 990 --~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
..+..|++++|-.|+-.|..-|-
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12556678899999999988885
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.23 E-value=6.1e-10 Score=129.00 Aligned_cols=418 Identities=10% Similarity=0.042 Sum_probs=232.0
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCC--C-CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 035871 496 HNGIIYLIQRETHDRLLASLFKILMPLISCTPYSR--M-PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAAL 572 (1127)
Q Consensus 496 Hr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~R--L-~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avl 572 (1127)
-..|+..|.+ .++.+....+++|..|....++.+ + ..|.++.+++. +... .|. .++..+..+|..+.
T Consensus 19 i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~----L~~~----~~~-~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 19 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT----MQNT----NDV-ETARCTAGTLHNLS 88 (529)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHH----HHHC----CCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHH----HhcC----CCH-HHHHHHHHHHHHHH
Confidence 3455566665 466788899999999987655311 1 12455555543 3321 122 25556777777643
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHH
Q 035871 573 STSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKI 651 (1127)
Q Consensus 573 s~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~ 651 (1127)
.. ++....+. ..|.+..|+++...+ ...+|.+|+.+|..++.+.+.......+ .....+.++
T Consensus 89 ~~----~~~~~~i~------------~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 89 HH----REGLLAIF------------KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp TS----HHHHHHHH------------HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred cC----chhHHHHH------------HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 32 11111111 114556666665433 3679999999999999876554322211 122333333
Q ss_pred HHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccc
Q 035871 652 LKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQ 731 (1127)
Q Consensus 652 L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~ 731 (1127)
|+. .+ .++...+...|..+ .. +..+ ..
T Consensus 152 l~~---~~-----------------~~~~~~~~~~L~~l----a~--~~~~--------------------------~~- 178 (529)
T 1jdh_A 152 LNK---TN-----------------VKFLAITTDCLQIL----AY--GNQE--------------------------SK- 178 (529)
T ss_dssp GGC---CC-----------------HHHHHHHHHHHHHH----HT--TCHH--------------------------HH-
T ss_pred Hhc---CC-----------------HHHHHHHHHHHHHH----Hh--CCHH--------------------------HH-
Confidence 321 10 12333333333221 10 0000 00
Q ss_pred cchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhh
Q 035871 732 ESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSA 805 (1127)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~ 805 (1127)
.. ..+. ..++ .|...+++.+ ..++.+++.+|.+++... +.+. .++..+ ..+
T Consensus 179 ---~~------i~~~------~~i~-~L~~ll~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~g~~~~L-~~l 235 (529)
T 1jdh_A 179 ---LI------ILAS------GGPQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVEAGGMQAL-GLH 235 (529)
T ss_dssp ---HH------HHHT------THHH-HHHHHHHHCCCHHHHHHHHHHHHHHTTST------THHHHHHHTTHHHHH-HTT
T ss_pred ---HH------HHHC------CCHH-HHHHHHHhCChHHHHHHHHHHHHHHhcCc------ccHHHHHHCCCHHHH-HHH
Confidence 00 0000 1112 2223455544 567888999999886421 1122 234433 477
Q ss_pred ccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcc
Q 035871 806 LHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~ 885 (1127)
+++.++.||..|+++|++++..+.-.. .+..+++.|...+.+++..||..|+|+|+|++..-..+...
T Consensus 236 l~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~--------- 303 (529)
T 1jdh_A 236 LTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM--------- 303 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHH---------
T ss_pred HhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH---------
Confidence 888999999999999999975432211 13578899999999999999999999999998731100000
Q ss_pred cccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCC-ccchhhHH
Q 035871 886 NANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGN-VKVQWNVC 964 (1127)
Q Consensus 886 ~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n-~KVRWNAc 964 (1127)
......+..|++. +....+++.|+.+|+++||||...-+... ..........+++.|++.+.+++ ..||-.||
T Consensus 304 ~~~~~~v~~L~~l-l~~~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 304 VCQVGGIEALVRT-VLRAGDREDITEPAICALRHLTSRHQEAE-----MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp HHHTTHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTSSSTTHH-----HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHcCChHHHHHH-HHccCCHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHcCChhHHHHHhccccchHHHHHHH
Confidence 0001123444432 22224557899999999999952110000 00000111245788999998876 59999999
Q ss_pred HHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhc
Q 035871 965 RALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 965 ~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
.+|+|+..++... ..-....+++.|+.++.+ .+++||..|+.|++... ...|....++....+.+|.++.
T Consensus 378 ~~l~nl~~~~~~~--~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~n~~--~~~~~~~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 378 GLIRNLALCPANH--APLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQ--FVEGVRMEEIVEGCTGALHILA 447 (529)
T ss_dssp HHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHH-HHHHHC-------------CBTTBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcChhhh--HHHHHcCCHHHHHHHHHH-HhHHHHHHHhcccCchh--hhccccHHHHHHHHHHHHHHHh
Confidence 9999998664322 000123578999999964 88999999999998511 2235556778788888888874
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.23 E-value=2e-10 Score=135.73 Aligned_cols=228 Identities=17% Similarity=0.139 Sum_probs=143.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
|-.++.++++.|+..||.||+++.... .+.... ++..| ..++.++++.|+..|+++||+++....-...
T Consensus 256 L~~LL~~~~~~v~~~a~~aL~~l~~~~-----~~~~~~v~~~g~i~~L-v~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 256 LVRLLHHNDPEVLADSCWAISYLTDGP-----NERIEMVVKKGVVPQL-VKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHSSC-----HHHHHHHHTTTCHHHH-HHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhhh-----hhhHHHHHhccchHHH-HHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 445678889999999999999975432 222222 23333 3667899999999999999999742211111
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhH
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNA 913 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnA 913 (1127)
...-..+++.|...+.+++..||..|+|+|+||+..-..... ..+....+..|++.+ ..++.+||..|
T Consensus 330 ~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~---------~v~~~g~i~~Lv~lL---~~~~~~v~~~A 397 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ---------QVVNHGLVPFLVGVL---SKADFKTQKAA 397 (529)
T ss_dssp HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH---------HHHHTTHHHHHHHHH---HSSCHHHHHHH
T ss_pred HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH---------HHHhcCcHHHHHHHh---cCCCHHHHHHH
Confidence 111123456677788999999999999999999853111000 011112233343321 24555899999
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHH----
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS---- 989 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~---- 989 (1127)
+.||+|+...-+.++. ....-..+|+.|++.++.++.+++-++..||.|+++-..-.-....... .|.
T Consensus 398 ~~aL~nl~~~~~~~~~-------~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~-~iee~gg 469 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQI-------VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSI-MIEECGG 469 (529)
T ss_dssp HHHHHHHHHHSCHHHH-------HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC
T ss_pred HHHHHHHHcCCCHHHH-------HHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHH-HHHHCCc
Confidence 9999999633222110 0001234688999999999999999999999999853110000000111 111
Q ss_pred -HHHHHHhcCCChHHHHHHHHHhc
Q 035871 990 -ILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 990 -~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.-+..|++++|..|+-.|..-|-
T Consensus 470 l~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 470 LDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12455678899999998888775
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.22 E-value=4.5e-10 Score=139.44 Aligned_cols=229 Identities=15% Similarity=0.039 Sum_probs=140.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccC-CC-HhHHHHHHHHHhhhhccc-cc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHD-DV-ASVRSAACRAIGVISCFP-QV 830 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~D-e~-~~VRaAA~RALGvlv~~p-~L 830 (1127)
|-..+.+.++.+|..||.||++|.... .+.+. ..+..|+ .++.+ ++ ..||..|+++||+++... .-
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~ 477 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNN-----YKNKMMVCQVGGIEALV-RTVLRAGDREDITEPAICALRHLTSRHQDA 477 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSC-----HHHHHHHHTTTHHHHHH-HHHHHHTTCHHHHHHHHHHHHHTTSSSTTH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCC-----HHHHHHHHHCCCHHHHH-HHHHccCCHHHHHHHHHHHHHHHHhcCchH
Confidence 335667889999999999999986532 11121 1334344 34443 34 489999999999996321 10
Q ss_pred c--cchHHHHHHHHHHHHhcCCCCc-chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh------
Q 035871 831 S--QSAEIIDKFIHAVEINTHDPLV-SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN------ 901 (1127)
Q Consensus 831 ~--~d~~fv~~ai~aLl~~l~D~~~-~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~------ 901 (1127)
. .....-...++.|+..+.+++. .||..|+|+|+||+..-.. ... .+....+..|++.+-.
T Consensus 478 ~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~---------i~~~g~i~~Lv~lL~~~~~~~~ 547 (780)
T 2z6g_A 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAP---------LREQGAIPRLVQLLVRAHQDTQ 547 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHH---------HHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHH---------HHHCCCHHHHHHHHHhcchhHH
Confidence 0 0011112346788888888776 9999999999999842110 000 0000112222221110
Q ss_pred -----------hcc--CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH
Q 035871 902 -----------LTK--DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968 (1127)
Q Consensus 902 -----------a~~--D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG 968 (1127)
... ..+.|+..|++||++|...- ++ ........+|+.|++.+.+++..||-+|+.||+
T Consensus 548 ~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~-------~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HN-------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 618 (780)
T ss_dssp HTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HH-------HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hh-------HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 011 12458889999999986210 00 000112446789999999999999999999999
Q ss_pred hhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 969 NLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 969 nl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
++..++..... =....+++.|+.++ +++|..||..|+.||....
T Consensus 619 ~L~~~~~~~~~--i~~~g~i~~L~~Ll-~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 619 ELAQDKEAAEA--IEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHTSHHHHHH--HHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHH--HHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 99765432100 00112467788887 5799999999999997443
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.22 E-value=5.6e-10 Score=131.99 Aligned_cols=348 Identities=15% Similarity=0.117 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
.+..|+..+-.+++.+. |..++. ..|.++.|+++...+....++.||..+|..++.+.+.-.
T Consensus 92 ~q~~a~~~~rklLs~~~~~~i~~ii----------------~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 92 SQLQATQAARKLLSREKQPPIDNII----------------RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHH----------------HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHH----------------HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 44567777777776554 222221 236788888887766667899999999999998876544
Q ss_pred hhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
....+ .....+..+|+. .+ ..+..+|+..|..+.. |.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s---~~-----------------~~v~e~A~~aL~nLa~-----------------~~~---- 194 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLAS---PH-----------------AHISEQAVWALGNIAG-----------------AGS---- 194 (529)
T ss_dssp HHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHT-----------------TCH----
T ss_pred HHHHHCCCHHHHHHHHcC---CC-----------------HHHHHHHHHHHHHHhc-----------------cCH----
Confidence 33222 112233334321 11 1445556665554321 000
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-----hhHHHHHHHHHhccchhHHhhcch
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-----SMVRTAAVTCFAGITSSVFFSLLK 791 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-----~~VRaaAc~cLa~Igs~~f~~Lp~ 791 (1127)
.++ . ..++.+. +. .|..++..++ ..+...++.+|+++....-...+.
T Consensus 195 -----------~~r--------~--~i~~~g~------i~-~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 246 (529)
T 3tpo_A 195 -----------AFR--------D--LVIKHGA------ID-PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246 (529)
T ss_dssp -----------HHH--------H--HHHHTTC------HH-HHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH
T ss_pred -----------HHH--------H--HHHHcCC------cH-HHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH
Confidence 000 0 0001110 11 2223333332 245666777777753211111111
Q ss_pred hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 792 ~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
.....++..| ..+++++++.|+..|+++|+.++..+.-......-..+++.|...+.+++..|+..|+++||||+..--
T Consensus 247 ~~~~~~lp~L-~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 247 DAVEQILPTL-VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp HHHHHHHHHH-HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHhhHHHHH-HHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence 2223455544 477899999999999999999975332111111112346778888899999999999999999974200
Q ss_pred hcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHh
Q 035871 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSC 951 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~ 951 (1127)
..... .+....+..|++. + ...++.||.+|+.+|+||...-... .....-..+++.|+..
T Consensus 326 ~~~~~---------i~~~g~l~~L~~L-L--~~~~~~i~~~a~~aL~nl~~~~~~~--------~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 326 EQTQK---------VIDAGALAVFPSL-L--TNPKTNIQKEATWTMSNITAGRQDQ--------IQQVVNHGLVPFLVGV 385 (529)
T ss_dssp HHHHH---------HHHTTGGGGHHHH-T--TCSSHHHHHHHHHHHHHHHTSCHHH--------HHHHHHTTHHHHHHHH
T ss_pred HHHHH---------HhhcccHHHHHHH-H--cCCCHHHHHHHHHHHHHHhcccHHH--------HHHHHhcCcHHHHHHH
Confidence 00000 0000111122221 1 2455689999999999996211100 0001123477889999
Q ss_pred hccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 952 VTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 952 l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
+.+++.+||-+||+||+|+..+.+......=...-+++.|+.+| ++++-+|+..|..||...
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 99999999999999999997542110000000122578999999 578999999999999743
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.21 E-value=1.1e-09 Score=132.23 Aligned_cols=416 Identities=11% Similarity=0.051 Sum_probs=234.0
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhHhcccCCC--CC-CCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhc
Q 035871 498 GIIYLIQRETHDRLLASLFKILMPLISCTPYSR--MP-GELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALST 574 (1127)
Q Consensus 498 ~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~R--L~-~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~ 574 (1127)
.|+..|.. .+..+...++++|..|....+..+ +. .+.++.+++ .+... .+. .++..|..+|..+..
T Consensus 18 ~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~----~L~~~----~~~-~~~~~A~~~L~~Ls~- 86 (644)
T 2z6h_A 18 ELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR----TMQNT----NDV-ETARCTAGTLHNLSH- 86 (644)
T ss_dssp HHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHH----HHHSC----CCH-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHH----HHhcC----CCH-HHHHHHHHHHHHHhc-
Confidence 34555555 466799999999999987765311 11 234444444 33321 122 255567777764332
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHHH
Q 035871 575 SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKILK 653 (1127)
Q Consensus 575 ~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~L~ 653 (1127)
.+ +....+. ..+.+..|+++...+ ...+|.+|+.+|..++.+++.......+ .....+.++|+
T Consensus 87 ~~---~~~~~i~------------~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~ 150 (644)
T 2z6h_A 87 HR---EGLLAIF------------KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 150 (644)
T ss_dssp SH---HHHHHHH------------TTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG
T ss_pred Ch---hhHHHHH------------HcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC
Confidence 21 1111111 124566666665433 3689999999999999886543332221 22233334432
Q ss_pred hhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccc
Q 035871 654 AASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQES 733 (1127)
Q Consensus 654 ~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~ 733 (1127)
. .+ .+....++..|..+ .. +... .
T Consensus 151 ~---~~-----------------~~~~~~a~~~L~~L----a~--~~~~--------------------------~---- 174 (644)
T 2z6h_A 151 K---TN-----------------VKFLAITTDCLQIL----AY--GNQE--------------------------S---- 174 (644)
T ss_dssp C---CC-----------------HHHHHHHHHHHHHH----HT--TCHH--------------------------H----
T ss_pred c---CC-----------------HHHHHHHHHHHHHH----Hh--cCcH--------------------------H----
Confidence 1 00 13333333333322 10 0000 0
Q ss_pred hhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhcc
Q 035871 734 SEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALH 807 (1127)
Q Consensus 734 ~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~ 807 (1127)
.. ...+. ..++ .|..++++.+ ..++..++.+|.+++... +.+.. ++.. +..++.
T Consensus 175 ~~------~i~~~------g~v~-~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~------~~~~~l~~~g~l~~-L~~ll~ 234 (644)
T 2z6h_A 175 KL------IILAS------GGPQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVEAGGMQA-LGLHLT 234 (644)
T ss_dssp HH------HHHHT------THHH-HHHHHHTTCCCHHHHHHHHHHHHHHTTCT------THHHHHHHTTHHHH-HHTTTT
T ss_pred HH------HHHHc------CChH-HHHHHHHcCChHHHHHHHHHHHHHHhcCc------ccHHHHHHCCCHHH-HHHHHh
Confidence 00 00010 1122 2334555554 578899999999886421 12222 3443 347778
Q ss_pred CCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccc
Q 035871 808 DDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA 887 (1127)
Q Consensus 808 De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~i 887 (1127)
+.++.||..|+++|++++....-. ..+..+++.|+..+.+++..||..|+|+|+||+..-..+... .+
T Consensus 235 ~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~---------v~ 302 (644)
T 2z6h_A 235 DPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM---------VC 302 (644)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH---------HH
T ss_pred cCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH---------HH
Confidence 889999999999999997433211 123578899999999999999999999999998731110000 01
Q ss_pred cHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCC-ccchhhHHHH
Q 035871 888 NSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGN-VKVQWNVCRA 966 (1127)
Q Consensus 888 s~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n-~KVRWNAc~A 966 (1127)
....+..|++.+. ...+++.|+.+|+++||||...-.... ..+.......+++.|++.+.+.+ ..||-.||.+
T Consensus 303 ~~g~v~~Lv~lL~-~~~~~~~v~~~a~~aL~nL~~~~~~~~-----~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 303 QVGGIEALVRTVL-RAGDREDITEPAICALRHLTSRHQEAE-----MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp HTTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTSSSTTHH-----HHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHH-ccCCcHHHHHHHHHHHHHHhcCCchHH-----HHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 1112444444321 223457999999999999952110000 00000112357889999998765 6999999999
Q ss_pred HHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhc
Q 035871 967 LSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 967 LGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
|+|+..++... ..=....+++.|+.++.+ .+++||..|+.|++... ...|....+|..+.+.+|.++.
T Consensus 377 L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~-~~~~vr~~a~~al~n~~--~~~~~~~~~v~~~a~~aL~~La 444 (644)
T 2z6h_A 377 IRNLALCPANH--APLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQ--FVEGVRMEEIVEGCTGALHILA 444 (644)
T ss_dssp HHHHTTSGGGH--HHHHHTTHHHHHHHHHHH-HHHHHTTC------------CCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHH--HHHHHcCCHHHHHHHHhc-cchhhhhHhhhccccch--hcccccHHHHHHHHHHHHHHHh
Confidence 99998765332 000123578999999964 78999999999998521 2234456778888888888874
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.16 E-value=1.5e-09 Score=125.80 Aligned_cols=435 Identities=13% Similarity=0.052 Sum_probs=230.7
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 035871 435 LMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLAS 514 (1127)
Q Consensus 435 Llt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtq 514 (1127)
.+..++.++++.+|..|+.+|..+-.+.... ..+.+. ...-..|+..|....+..+...
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~--------------------~~~i~~Lv~~L~~~~~~~~~~~ 79 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRS--------------------PQMVSAIVRTMQNTNDVETARC 79 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTC--------------------HHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhC--------------------cchHHHHHHHHhcCCCHHHHHH
Confidence 3445778999999999999999887663210 011100 1233456666666567778888
Q ss_pred HHHHHHHhHhcccCCCC---CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhc
Q 035871 515 LFKILMPLISCTPYSRM---PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISA 591 (1127)
Q Consensus 515 lLKcLa~LVq~TPY~RL---~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ss 591 (1127)
..++|..|..... .|- ..|.++.+++. +.. .| ..++..++.+|..+....+... ..+.
T Consensus 80 a~~~L~~ls~~~~-~~~~i~~~g~i~~L~~l----L~~-----~~-~~v~~~a~~~L~~l~~~~~~~~---~~i~----- 140 (529)
T 1jdh_A 80 TAGTLHNLSHHRE-GLLAIFKSGGIPALVKM----LGS-----PV-DSVLFYAITTLHNLLLHQEGAK---MAVR----- 140 (529)
T ss_dssp HHHHHHHHTTSHH-HHHHHHHTTHHHHHHHH----TTC-----SC-HHHHHHHHHHHHHHHHHCTTHH---HHHH-----
T ss_pred HHHHHHHHHcCch-hHHHHHHcCCHHHHHHH----HcC-----CC-HHHHHHHHHHHHHHhcCCcchH---HHHH-----
Confidence 8888888754321 111 13455555542 221 12 2366677788887766533221 1111
Q ss_pred CCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCC
Q 035871 592 GSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGN 670 (1127)
Q Consensus 592 g~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~ 670 (1127)
..|.+..|++.... ....+|..+..+|..++...+........ .....+..+|+....
T Consensus 141 -------~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~------------- 199 (529)
T 1jdh_A 141 -------LAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY------------- 199 (529)
T ss_dssp -------HHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-------------
T ss_pred -------HcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh-------------
Confidence 12345555555543 23567777777888888766544332222 122334444433211
Q ss_pred CccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhh
Q 035871 671 TAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQ 750 (1127)
Q Consensus 671 ~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~ 750 (1127)
+....++.++|..+ .. .|... . ..++.
T Consensus 200 ------~~~~~~a~~~L~~l----~~-----------------------------~~~~~----~------~~~~~---- 226 (529)
T 1jdh_A 200 ------EKLLWTTSRVLKVL----SV-----------------------------CSSNK----P------AIVEA---- 226 (529)
T ss_dssp ------HHHHHHHHHHHHHH----TT-----------------------------STTHH----H------HHHHT----
T ss_pred ------HHHHHHHHHHHHHH----hc-----------------------------CcccH----H------HHHHC----
Confidence 12333344444322 10 00000 0 00111
Q ss_pred hHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc-
Q 035871 751 WSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ- 829 (1127)
Q Consensus 751 W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~- 829 (1127)
.+++ .|...++++++.+|..++.+|+++.... .. .+....++..+ ..+++++++.||..|+++|++++....
T Consensus 227 --g~~~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~--~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 227 --GGMQ-ALGLHLTDPSQRLVQNCLWTLRNLSDAA-TK--QEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp --THHH-HHHTTTTSSCHHHHHHHHHHHHHHHTTC-TT--CSCCHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred --CCHH-HHHHHHhCCChHHHHHHHHHHHHHhcCC-hh--hHHHHhHHHHH-HHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 1122 2334567778999999999999986432 11 11122455544 477799999999999999999965321
Q ss_pred cccchHHHHHHHHHHHHhcCC--CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-C
Q 035871 830 VSQSAEIIDKFIHAVEINTHD--PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-G 906 (1127)
Q Consensus 830 L~~d~~fv~~ai~aLl~~l~D--~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~ 906 (1127)
.+. ...-...++.|+..+.+ ++..||..|.++|+||+..-..... .. ...+....+..| ++..++ +
T Consensus 300 ~~~-~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~---~~i~~~~~i~~L----~~lL~~~~ 368 (529)
T 1jdh_A 300 NKM-MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM---AQ---NAVRLHYGLPVV----VKLLHPPS 368 (529)
T ss_dssp HHH-HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH---HH---HHHHHTTCHHHH----HHTTSTTC
T ss_pred HHH-HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHH---HH---HHHHHcCChhHH----HHHhcccc
Confidence 111 11112345666666654 3479999999999999853100000 00 000000112233 233443 3
Q ss_pred -chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHh----------------
Q 035871 907 -DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN---------------- 969 (1127)
Q Consensus 907 -DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGn---------------- 969 (1127)
+.||..|+.+|+|+...-.. .....-..+++.|++.+.+++.+||-.||+|++|
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~~---------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~ 439 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPAN---------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGGG---------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcChhh---------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHH
Confidence 38999999999999731110 1111123578889999988889999888888777
Q ss_pred ------hhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 970 ------LFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 970 ------l~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
+..++... ..=....+++.|+.++. +++..||..|+.||+.
T Consensus 440 ~~al~~L~~~~~~~--~~l~~~~~v~~l~~ll~-~~~~~v~~~a~~~l~~ 486 (529)
T 1jdh_A 440 TGALHILARDVHNR--IVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCE 486 (529)
T ss_dssp HHHHHHHTTSHHHH--HHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchHH--HHHhccCCccHHHHHHc-CCchHHHHHHHHHHHH
Confidence 21111000 00001224578888885 5788999999999873
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.13 E-value=6.2e-10 Score=115.79 Aligned_cols=188 Identities=20% Similarity=0.150 Sum_probs=127.6
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-cccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~ 832 (1127)
|...++++++.+|..|+.+|+++.... .+.+. .++.. +..+++++++.||..|+++|++++. .+..+.
T Consensus 49 L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~-l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 49 LVKLLTSTDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEV-LVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH-HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHCCCHHH-HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445678889999999999999987531 11222 23443 4477889999999999999999973 222211
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKS 911 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRs 911 (1127)
...-..+++.|+..+.+++..||..|+|+|+||+..-..... ..+....+..|++ ..+ +++.||.
T Consensus 123 -~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L~~----ll~~~~~~v~~ 188 (252)
T 4hxt_A 123 -AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK---------AIVDAGGVEVLVK----LLTSTDSEVQK 188 (252)
T ss_dssp -HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHH----HTTCSCHHHHH
T ss_pred -HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------HHHHCcCHHHHHH----HHCCCCHHHHH
Confidence 111234678888999999999999999999999863110000 0011122334433 334 4458999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
+|+++|+|+...-+. . .....-..+++.|++.+.+++.+||.+|+.+|+|+..+.
T Consensus 189 ~a~~~L~~l~~~~~~-~-------~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 189 EAARALANIASGPTS-A-------IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTTSBHH-H-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHH-H-------HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 999999999731100 0 000112346889999999999999999999999998764
No 41
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.13 E-value=9.4e-09 Score=127.93 Aligned_cols=432 Identities=13% Similarity=0.072 Sum_probs=243.7
Q ss_pred ChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhH
Q 035871 444 CLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLI 523 (1127)
Q Consensus 444 s~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LV 523 (1127)
.+.+|..|.-+++-+++..+ +=+ + ++ - |-.... -.+.......+..-....+-.++++.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~--~~~-~--~~-----~---~~~~~~--------~~~~~~~~~~~~~~~~~a~~alt~i~ 275 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMY--YDE-A--KA-----R---FTDQID--------EYIKDKLLAPDMESKVRVTVAITALL 275 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCC--SHH-H--HH-----H---HHHHHH--------HHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhc--cch-h--HH-----H---HHHHHH--------HHHHHHhccCChHhHHHHHHHHHHHh
Confidence 56899999999999999864 111 1 11 0 111111 12222334455556677788888888
Q ss_pred hcccCC----CCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCc
Q 035871 524 SCTPYS----RMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKR 599 (1127)
Q Consensus 524 q~TPY~----RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~ 599 (1127)
+.+|-. -+..|.++.++.-+ .+ . |. .++-.|..+|+...+. +++...+... .
T Consensus 276 ~g~~~~~~~~~~~~G~v~~li~Ll----~s--~---~~-~~q~~A~~al~~aa~~----~~~R~~I~~~----------g 331 (810)
T 3now_A 276 NGPLDVGNQVVAREGILQMILAMA----TT--D---DE-LQQRVACECLIAASSK----KDKAKALCEQ----------G 331 (810)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHHH----HS--S---CH-HHHHHHHHHHHHHTTS----HHHHHTTHHH----------H
T ss_pred cCCHHHHHHHHhccchHHHHHHHh----CC--C---CH-HHHHHHHHHHHHHcCC----cHHHHHHHHc----------C
Confidence 877631 12457777666532 22 1 22 2444666667664332 2232222110 0
Q ss_pred chhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhC------hhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCcc
Q 035871 600 SGVLFTLLQCSERLASPAICFESLQALRAVSHNY------PNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAG 673 (1127)
Q Consensus 600 s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~y------p~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~ 673 (1127)
..+|..+++ +....+|..|+-.|+.++..+ +.+...-.+.+...+.++|..... | .
T Consensus 332 v~~L~~Ll~----s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~-d------------~- 393 (810)
T 3now_A 332 VDILKRLYH----SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGK-D------------K- 393 (810)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSC-C------------S-
T ss_pred cHHHHHHHc----CCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCC-C------------H-
Confidence 023444433 222468999999999988533 222222234556667777643210 1 0
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHH
Q 035871 674 FIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSE 753 (1127)
Q Consensus 674 l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~ 753 (1127)
.++..|+..|..+ +. +|..+. ++... ..
T Consensus 394 ----~v~~~AveaLayL----S~-----------------------------~~~vk~-------------~lv~d--~g 421 (810)
T 3now_A 394 ----DIRRWAADGLAYL----TL-----------------------------DAECKE-------------KLIED--KA 421 (810)
T ss_dssp ----SHHHHHHHHHHHH----TT-----------------------------SHHHHH-------------HHHHC--HH
T ss_pred ----HHHHHHHHHHHHH----hC-----------------------------CcHHHH-------------HHHHc--cc
Confidence 2333444444322 00 000000 00000 01
Q ss_pred HHHhhHHHHHccCChhHHHHHHHHHhccchhH--------------Hhhc------chh----HH---H-----HHHHHH
Q 035871 754 MIEKHMPLILQHISSMVRTAAVTCFAGITSSV--------------FFSL------LKE----TQ---E-----FIISSL 801 (1127)
Q Consensus 754 iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~--------------f~~L------p~~----~q---~-----~~i~~L 801 (1127)
++. .|-.++..+++.++..|..+|+||.... |... |.+ .+ . .+++.|
T Consensus 422 ~Ip-~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L 500 (810)
T 3now_A 422 SIH-ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL 500 (810)
T ss_dssp HHH-HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hHH-HHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence 122 2334556778999999999999997632 1000 000 01 1 234434
Q ss_pred HhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 802 IDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 802 ll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..+++..++.||..|+++||+++..+..+. ...-..+++.|+..+.+.+..+|..|+|||+||+-.--. +..+..
T Consensus 501 -V~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~-~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---~~~~~~ 575 (810)
T 3now_A 501 -CALAKTESHNSQELIARVLNAVCGLKELRG-KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---EVSFSG 575 (810)
T ss_dssp -HHHHTCCCHHHHHHHHHHHHHHHTSHHHHH-HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---HHHTTT
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---hhhhcc
Confidence 477788999999999999999975444221 111234678888888888899999999999999853110 000110
Q ss_pred CCcccccHHHHHHHHHHHHhhcc-CCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 882 SIDSNANSHLMASLTESALNLTK-DGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~-D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
......+..|++ +.. |.+ ..+.+|++||+||...-+.. .....-+.+++.|+..+.+++..|
T Consensus 576 ----~~~~~aIppLv~----LL~~~~~~l~~~eAl~AL~NLa~~~d~~--------~~~Ii~aG~l~~Lv~LL~s~~~~V 639 (810)
T 3now_A 576 ----QRSLDVIRPLLN----LLQQDCTALENFESLMALTNLASMNESV--------RQRIIKEQGVSKIEYYLMEDHLYL 639 (810)
T ss_dssp ----HHHHHTHHHHHH----TTSTTSCHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHHHHHSCCTTH
T ss_pred ----hhhhcHHHHHHH----HhCCCCcHHHHHHHHHHHHHHhcCCHHH--------HHHHHHcCCHHHHHHHHcCCCHHH
Confidence 000123444443 333 323 45679999999997321100 001122357888999999999999
Q ss_pred hhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 960 QWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
|-+|+.+|+|+..++.....-. -...+++.|+.++. ..+.+||..|+.||+..
T Consensus 640 q~~A~~~L~NLa~~~~~~~~~v-~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanL 692 (810)
T 3now_A 640 TRAAAQCLCNLVMSEDVIKMFE-GNNDRVKFLALLCE-DEDEETATACAGALAII 692 (810)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHH-SSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHH-hccCcHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 9999999999998765431100 01247889999985 58899999999999843
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.10 E-value=7.8e-09 Score=124.17 Aligned_cols=420 Identities=17% Similarity=0.185 Sum_probs=240.0
Q ss_pred hhhhhhcCCChhHHHHH-HHHHHHHhcCCc--hhhhhhhhhcccc----CCcccccchHHHHHHHHHHH----HHHHHHH
Q 035871 435 LMTCLLFDPCLKARMAS-ASTLAAMLDGPS--TVFLQVAEYKESI----KCGSFMPLSTSYGHIIMQLH----NGIIYLI 503 (1127)
Q Consensus 435 Llt~iL~Dps~KvR~aA-~~~LsaLL~gsk--~~llq~AE~~es~----~~~SFTsfS~tLg~~l~eLH----r~Ll~aL 503 (1127)
-+.-.|..++...|..+ ..++..+.-|-. ..|.++-+.-.+. ++..|.-+.. ++..--++. .+|...|
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~-~~~~~~e~~~l~~n~l~kdL 95 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMN-YAKSQPDMAIMAVNSFVKDC 95 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHH-HHHHSHHHHHTTHHHHGGGS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HcccCchHHHHHHHHHHHHc
Confidence 34455677777677665 455556666632 2344443322111 1112222211 111111111 1222334
Q ss_pred hcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHH
Q 035871 504 QRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQ 583 (1127)
Q Consensus 504 ~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~ 583 (1127)
++ .++.+...++++++.+. .+++.+.++..+...+.+ .+.+ +|..|..|+..+....|-.-+
T Consensus 96 ~~-~n~~ir~~AL~~L~~i~--------~~~~~~~l~~~l~~~L~d-----~~~~-VRk~A~~al~~i~~~~p~~~~--- 157 (591)
T 2vgl_B 96 ED-PNPLIRALAVRTMGCIR--------VDKITEYLCEPLRKCLKD-----EDPY-VRKTAAVCVAKLHDINAQMVE--- 157 (591)
T ss_dssp SS-SSHHHHHHHHHHHHTCC--------SGGGHHHHHHHHHHHSSC-----SCHH-HHHHHHHHHHHHHHSSCCCHH---
T ss_pred CC-CCHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHcCC-----CChH-HHHHHHHHHHHHHhhChhhcc---
Confidence 44 45556677788887764 356777777766665532 2333 777888888888775432111
Q ss_pred HHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccc
Q 035871 584 MFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKA 663 (1127)
Q Consensus 584 ~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~ 663 (1127)
..+|+..+.+... +..+.||..|+.+|..++.+.|... ++......+..+++.....+ .
T Consensus 158 ---------------~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~--~~~l~~~~~~~Ll~~l~~~~---~ 216 (591)
T 2vgl_B 158 ---------------DQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSN--LLDLNPQNINKLLTALNECT---E 216 (591)
T ss_dssp ---------------HHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCC--SCCCHHHHHHHHHHHHHHCC---H
T ss_pred ---------------cccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCcc--chhccHHHHHHHHHcCCCCC---c
Confidence 0124444444443 4557899999999999998776431 01111111222222110000 0
Q ss_pred cCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhh
Q 035871 664 WKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKA 743 (1127)
Q Consensus 664 ~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 743 (1127)
.+ +| ..+++|.. + .+.....
T Consensus 217 -----------~~-q~--~il~~l~~----l-----------------------------------~~~~~~~------- 236 (591)
T 2vgl_B 217 -----------WG-QI--FILDCLSN----Y-----------------------------------NPKDDRE------- 236 (591)
T ss_dssp -----------HH-HH--HHHHHHHT----S-----------------------------------CCCSHHH-------
T ss_pred -----------hH-HH--HHHHHHHH----h-----------------------------------CCCChHH-------
Confidence 11 22 12222211 0 0000000
Q ss_pred hhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchh------HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHH
Q 035871 744 FQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSS------VFFSLLKETQEFIISSLIDSALHDDVASVRSAA 817 (1127)
Q Consensus 744 ~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~------~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA 817 (1127)
. ..+++.++ ..++|.++.|+-.|+.|+..++.. .+..+ -..+...|+ .+ .++++.||..|
T Consensus 237 ---~----~~~l~~l~-~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~----~~~~~~~L~-~L-~~~d~~vr~~a 302 (591)
T 2vgl_B 237 ---A----QSICERVT-PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML----LKKLAPPLV-TL-LSGEPEVQYVA 302 (591)
T ss_dssp ---H----HHHHHHHT-TCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH----HHHTHHHHH-HH-TTSCHHHHHHH
T ss_pred ---H----HHHHHHHH-HHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH----HHHHHHHHH-HH-hcCCccHHHHH
Confidence 0 23444444 367899999999999999998631 11110 011222232 33 35889999999
Q ss_pred HHHHhhhhc-ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHH
Q 035871 818 CRAIGVISC-FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLT 896 (1127)
Q Consensus 818 ~RALGvlv~-~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~ 896 (1127)
+++|+.++. .|..-.. .+..++...+|+ ..||.+|.+.|+++++.- .+ +.++..|.
T Consensus 303 L~~l~~i~~~~p~~~~~------~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~---------------nv-~~iv~~L~ 359 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQ------EIKVFFVKYNDP-IYVKLEKLDIMIRLASQA---------------NI-AQVLAELK 359 (591)
T ss_dssp HHHHHHHHHHCCSTTTT------CTTTTSCCTTSC-HHHHHHHHHHHHHTCCSS---------------TH-HHHHHHHH
T ss_pred HHHHHHHHHhChHHHHH------HHHhheeccCCh-HHHHHHHHHHHHHHCChh---------------hH-HHHHHHHH
Confidence 999999973 4443221 111122223555 999999999999998531 11 22344444
Q ss_pred HHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccc
Q 035871 897 ESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 897 e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~ 975 (1127)
+. .+| ++.+|..+++++|++..- .+...+.+++.|++.+++++..|+-.+..+++++++..
T Consensus 360 ~~----l~~~d~~~r~~~v~aI~~la~~-------------~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~- 421 (591)
T 2vgl_B 360 EY----ATEVDVDFVRKAVRAIGRCAIK-------------VEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY- 421 (591)
T ss_dssp HH----TTSSCHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS-
T ss_pred HH----HhcCCHHHHHHHHHHHHHHHHh-------------ChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHC-
Confidence 33 455 447999999999999722 12346789999999999988899999999999998642
Q ss_pred ccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 976 INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 976 i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
+.....+++.|+..+.++..-++|..+++.||..
T Consensus 422 -----p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 422 -----PNKYESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp -----CSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred -----cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 1223567899999998899999999999999943
No 43
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.06 E-value=8e-11 Score=113.98 Aligned_cols=119 Identities=23% Similarity=0.178 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
...++.+...++|++..||..|+|+||++++. . +..|++ +.+|.| .||..|+++
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------------~-----~~~L~~----~L~d~~~~vR~~A~~a 65 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----------------A-----FEPLLE----SLSNEDWRIRGAAAWI 65 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST----------------T-----HHHHHH----GGGCSCHHHHHHHHHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----------------H-----HHHHHH----HHcCCCHHHHHHHHHH
Confidence 35567788889999999999999999988742 1 122322 234554 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++. + +.+++.|++.+++.+..||..|+.|||+++. ..+++.|+.++.
T Consensus 66 L~~~~---------------~----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------------~~a~~~L~~~l~ 114 (131)
T 1te4_A 66 IGNFQ---------------D----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ERVRAAMEKLAE 114 (131)
T ss_dssp HGGGC---------------S----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------HHHHHHHHHHTT
T ss_pred HHhcC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHh
Confidence 99994 2 4578899999999999999999999999873 357889999995
Q ss_pred cCCChHHHHHHHHHhcC
Q 035871 997 DSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~ 1013 (1127)
+++..||..|+.||+.
T Consensus 115 -d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 115 -TGTGFARKVAVNYLET 130 (131)
T ss_dssp -SCCTHHHHHHHHHGGG
T ss_pred -CCCHHHHHHHHHHHHh
Confidence 6889999999999973
No 44
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.01 E-value=1.6e-10 Score=111.84 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+...|+|+++.+|..|+.+|+.+|... +..| ..+++|+++.||..|+++||.+. + .
T Consensus 17 l~~~L~~~~~~vR~~A~~~L~~~~~~~------------~~~L-~~~L~d~~~~vR~~A~~aL~~~~------~-----~ 72 (131)
T 1te4_A 17 RGSHMADENKWVRRDVSTALSRMGDEA------------FEPL-LESLSNEDWRIRGAAAWIIGNFQ------D-----E 72 (131)
T ss_dssp ----CCSSCCCSSSSCCSSTTSCSSTT------------HHHH-HHGGGCSCHHHHHHHHHHHGGGC------S-----H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCchH------------HHHH-HHHHcCCCHHHHHHHHHHHHhcC------C-----H
Confidence 445788999999999999999998753 1223 36678999999999999999983 2 3
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRAL 917 (1127)
.+++.|+..++|++..||..|+||||++++. +.+..|++. .+|.| .||..|++||
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~--------------------~a~~~L~~~----l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGGE--------------------RVRAAMEKL----AETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH--------------------HHHHHHHHH----TTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--------------------HHHHHHHHH----HhCCCHHHHHHHHHHH
Confidence 5788888888999999999999999999853 123334332 34544 7999999999
Q ss_pred hhh
Q 035871 918 GNL 920 (1127)
Q Consensus 918 GnL 920 (1127)
|+|
T Consensus 129 ~~i 131 (131)
T 1te4_A 129 ETH 131 (131)
T ss_dssp GGC
T ss_pred HhC
Confidence 975
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.01 E-value=1.1e-07 Score=118.31 Aligned_cols=228 Identities=17% Similarity=0.114 Sum_probs=144.4
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchh--HHhhcchhHHHHHHHHHHhhhcc-CCCHhHHHHHHHHHhhhhcccc-cccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSS--VFFSLLKETQEFIISSLIDSALH-DDVASVRSAACRAIGVISCFPQ-VSQS 833 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~--~f~~Lp~~~q~~~i~~Lll~~~~-De~~~VRaAA~RALGvlv~~p~-L~~d 833 (1127)
+|-.++...++.+|..|+.||++|... .=..++.....-++..|+ .+++ |.+...+..|++||+++...+. .+.
T Consensus 540 ~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv-~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~- 617 (810)
T 3now_A 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL-NLLQQDCTALENFESLMALTNLASMNESVRQ- 617 (810)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH-HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH-HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH-
Confidence 344566777889999999999997432 101111111123555555 4555 4455677899999999976532 111
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhhh
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKSN 912 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRsn 912 (1127)
...-+.+++.|...+.+++..||..|+|+|+||+..-.. ...+. + ....+..| +++.+ ++.+||..
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~-~~~~v-~-------~~g~l~~L----v~LL~s~d~~vq~~ 684 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV-IKMFE-G-------NNDRVKFL----ALLCEDEDEETATA 684 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH-HHHHH-S-------SSSHHHHH----HHGGGCSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH-HHHHH-h-------ccCcHHHH----HHHhcCCCHHHHHH
Confidence 111123567777778899999999999999999853110 00000 0 00123333 22344 44589999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHH--HHHHHHHHHhhccCCccchhhHHHHHHhhhcccc-cc--ccCCCchhHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWL--ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET-IN--LEDMDWAPSV 987 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~--E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~-i~--~~~~~wa~~v 987 (1127)
|+.||+||...-+. .-.... +..|+.|+..+.+++.++|-.||+||+|+..... .. +.+ .-+
T Consensus 685 Aa~ALanLt~~s~~---------~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e----~G~ 751 (810)
T 3now_A 685 CAGALAIITSVSVK---------CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE----TDI 751 (810)
T ss_dssp HHHHHHHHHHHCHH---------HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHT----STH
T ss_pred HHHHHHHHhCCCHH---------HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH----CCC
Confidence 99999999632110 000112 3577789999999999999999999999986421 10 111 136
Q ss_pred HHHHHHHHhcC--CChHHHHHHHHHhcC
Q 035871 988 FSILLLLLRDS--SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 988 ~~~Ll~ll~~~--~NFKVRi~AA~AL~~ 1013 (1127)
++.|+.++.+. ++.||+-.|..||..
T Consensus 752 i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 752 MELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 78999998654 688999999999863
No 46
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.99 E-value=6.4e-07 Score=113.26 Aligned_cols=360 Identities=9% Similarity=0.096 Sum_probs=191.2
Q ss_pred chHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q 035871 617 AICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISG 696 (1127)
Q Consensus 617 ~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g 696 (1127)
.+|..++++|..++..||..+.+|...+...+.+.+...... ...+++...|+..+..+.+.-..
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~al~fl~~~~~~~~~ 325 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQ---------------PKYDILVSKSLSFLTAVTRIPKY 325 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC---------------TTSHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------cCcHHHHHHHHHHHHHHhCcHhH
Confidence 367788899999999999988888888777777776532211 12247777788877665431100
Q ss_pred ccCccccccccccC-CCCcchhhhhhccCCCCc--ccccchhhhhhhhhhhhcchhhhH----HHHHhhHHHHHccC-Ch
Q 035871 697 FKGTEDLLDDKLLD-NPFTSDCIRIKNISSAPL--YEQESSEDIKESAKAFQSGSEQWS----EMIEKHMPLILQHI-SS 768 (1127)
Q Consensus 697 ~~g~~~~~~~~l~d-~~~~s~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~l~~~~W~----~iie~~Lp~~l~d~-~~ 768 (1127)
. .++. .++...-+...-+ |. |..+ ..+.|. +.++. -+.++ .-
T Consensus 326 ----~-----~~~~~~~~l~~li~~~i~---~~m~~~~~--------------d~e~w~~dp~e~i~~----d~e~~d~~ 375 (960)
T 1wa5_C 326 ----F-----EIFNNESAMNNITEQIIL---PNVTLREE--------------DVELFEDDPIEYIRR----DLEGSDTD 375 (960)
T ss_dssp ----H-----GGGCSHHHHHHHHHHTHH---HHHSCCGG--------------GTTTTTTCHHHHHHH----HHHC----
T ss_pred ----H-----HHHcCchHHHHHHHHHhH---HhcCCCHH--------------HHHHHhcCHHHHHHh----ccCccccc
Confidence 0 0000 0011000000000 00 0000 011121 01111 11122 24
Q ss_pred hHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhcc------CCCHhHHHHHHHHHhhhhcc---cc--ccc---ch
Q 035871 769 MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALH------DDVASVRSAACRAIGVISCF---PQ--VSQ---SA 834 (1127)
Q Consensus 769 ~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~------De~~~VRaAA~RALGvlv~~---p~--L~~---d~ 834 (1127)
.+|.+|.++|..+... +++.--..++. .+...+. ++++-.|-||..++|.+... +. ... ..
T Consensus 376 s~R~aa~~~L~~l~~~----~~~~v~~~~l~-~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEK----NEVLVTNIFLA-HMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHH----CHHHHHHHHHH-HHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred CcHHHHHHHHHHHHHH----cchhHHHHHHH-HHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 7899999999876532 22111112222 2222223 56788999999999999632 11 110 00
Q ss_pred HHHHHHHHHHHHhcCCC---CcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh
Q 035871 835 EIIDKFIHAVEINTHDP---LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK 910 (1127)
Q Consensus 835 ~fv~~ai~aLl~~l~D~---~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR 910 (1127)
.+..-+.+.++..+.|+ ++-||..|+|+||.+++.+ .++.+..+++..++...|.+ .||
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-----------------~~~~l~~~l~~l~~~L~d~~~~V~ 513 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-----------------TKAQLIELMPILATFLQTDEYVVY 513 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-----------------CHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-----------------CHHHHHHHHHHHHHHhCCCChhHH
Confidence 12221233444455677 8999999999999999753 12345666666666667765 699
Q ss_pred hhHHHHHhhhhhccccCCCCCCCC--CCChhHHHHHHHHHHHhhccCC-----ccchhhHHHHHHhhhccccccccCCCc
Q 035871 911 SNAVRGLGNLSRFVKYTSSSHPAS--LGDSRWLERIVQALVSCVTTGN-----VKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 911 snAvRALGnLl~~l~~~~~~~~~~--~g~~~~~E~~i~aLlk~l~~~n-----~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
..|++||.+++.......-+.+.. ..-...++.+++.|++.++..+ .+....+..||+.+...- ...-.+.
T Consensus 514 ~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~--~~~~~p~ 591 (960)
T 1wa5_C 514 TYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS--EDSIQPL 591 (960)
T ss_dssp HHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH--TTTTGGG
T ss_pred HHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH--HHhhhhH
Confidence 999999999986543100000000 0001247889999998887642 225678888998875431 1112246
Q ss_pred hhHHHHHHHHHHhc----CCChHHHHHHHHHhcCCCcc---cccCCchHHHHHHHHHHHHHhccCCCCCCccc
Q 035871 984 APSVFSILLLLLRD----SSNFKIRIQAAAALAVPSSV---SDYGKSFSDVVQGLEHILENLGADHLSAPSSF 1049 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~----~~NFKVRi~AA~AL~~p~~R---~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Ey 1049 (1127)
...+.+.|...+.. ..|-..+..+-.+|+..... ..+...-..++..+...|++ +..+|.+|
T Consensus 592 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~----~~~~~~~~ 660 (960)
T 1wa5_C 592 FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE----DIQEFIPY 660 (960)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT----TCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh----hhHhhHHH
Confidence 67777777766643 34656675556665533221 22222333455555555543 33445444
No 47
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.91 E-value=3.8e-08 Score=115.65 Aligned_cols=227 Identities=19% Similarity=0.139 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhH---HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH-HHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKET---QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII-DKFIH 842 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~---q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv-~~ai~ 842 (1127)
++.++..|+.+|.+|....= -.+.. ...+|..|+ .+++..++.|+..|++||++++.-..-..-..++ ..+++
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~~~GaIp~LV-~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDV--ANKATLCSMKGCMRALV-AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCH--HHHHHHHHCHHHHHHHH-HGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhCCCc--ccHHHHHHcCCcHHHHH-HHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHH
Confidence 46789999999999753210 00111 122455454 7788899999999999999996421000001111 24577
Q ss_pred HHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc--hhhhhHHHHHhh
Q 035871 843 AVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD--KIKSNAVRGLGN 919 (1127)
Q Consensus 843 aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D--KVRsnAvRALGn 919 (1127)
.|+.. ++..+..|+..|+.||+||+..-..+..... .....+..|++. +...++.+ .|+.+|+.+|.|
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~--------~~~Gal~~Lv~L-L~~~~~~~~~~v~~~A~~aL~n 360 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC--------AVDGALAFLVGT-LTYRSQTNTLAIIESGGGILRN 360 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH--------HSTTHHHHHHHH-TTCCCSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH--------HhcCcHHHHHHH-hcCCCCcchHHHHHHHHHHHHH
Confidence 88876 5667889999999999999862111100000 011224444332 11111221 499999999999
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc-cccccccCCCchhHHHHHHHHHHhcC
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL-NETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~-n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
|...+...+-. .....-..+|+.|++.+.+++.+|+-|||.||+|+-. ++.-.. .=...-+++.|+.++. +
T Consensus 361 Ls~~~a~~~~~-----~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~--~i~~~G~I~~Lv~LL~-s 432 (458)
T 3nmz_A 361 VSSLIATNEDH-----RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE--ALWDMGAVSMLKNLIH-S 432 (458)
T ss_dssp HHHHHTTCHHH-----HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH--HHHHHTHHHHHHTTTT-C
T ss_pred HHhcccCCHHH-----HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH--HHHHCCCHHHHHHHHh-C
Confidence 97432211100 0000113468889999999999999999999999973 332110 0012236899999995 6
Q ss_pred CChHHHHHHHHHhcC
Q 035871 999 SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~ 1013 (1127)
++.+||..|+.||..
T Consensus 433 ~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 433 KHKMIAMGSAAALRN 447 (458)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999973
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.89 E-value=1.7e-07 Score=113.41 Aligned_cols=376 Identities=12% Similarity=0.087 Sum_probs=228.0
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q 035871 494 QLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALS 573 (1127)
Q Consensus 494 eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls 573 (1127)
-+-.+|...|++ .++-+...++++++.+.. +++++.++..+..++.+. +.+ +|.+|.-|+..++.
T Consensus 107 l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--------~~~~~~l~~~l~~~L~~~-----~~~-VRk~A~~al~~l~~ 171 (618)
T 1w63_A 107 LMTNCIKNDLNH-STQFVQGLALCTLGCMGS--------SEMCRDLAGEVEKLLKTS-----NSY-LRKKAALCAVHVIR 171 (618)
T ss_dssp HHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHSC-----CHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHcCC-----CHH-HHHHHHHHHHHHHH
Confidence 344566667776 555688889999998862 356777777777777642 333 77788888888877
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHH
Q 035871 574 TSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILK 653 (1127)
Q Consensus 574 ~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~ 653 (1127)
..|..-+ .|+..+.... .+.++.|+.-|+.+|..++.+.|... .++..+...+.++|+
T Consensus 172 ~~p~~v~--------------------~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~~-~~~~~~v~~l~~~L~ 229 (618)
T 1w63_A 172 KVPELME--------------------MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDML-AHFRKLVPQLVRILK 229 (618)
T ss_dssp HCGGGGG--------------------GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHHH-HHHHTTHHHHHHHHH
T ss_pred HChHHHH--------------------HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHH
Confidence 5432111 1221111111 23446788899999999988777642 234443333444443
Q ss_pred hhCC-CCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCccccc
Q 035871 654 AASP-EVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQE 732 (1127)
Q Consensus 654 ~~~~-~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~ 732 (1127)
.... ..+.+-. .+. ..++-.+...+++|..+ . .. +|..
T Consensus 230 ~~~~~~~~~~~~---~~~---~~~~~~q~~il~~L~~l----~----~~------------------------~~~~--- 268 (618)
T 1w63_A 230 NLIMSGYSPEHD---VSG---ISDPFLQVRILRLLRIL----G----RN------------------------DDDS--- 268 (618)
T ss_dssp HHHHSCCCTTTC---SSS---SSCHHHHHHHHHHHHHH----T----TT------------------------CHHH---
T ss_pred HHHcCCCCcccc---ccC---CCCChHHHHHHHHHHHh----C----CC------------------------CHHH---
Confidence 2110 0000000 000 01111222223333211 0 00 0000
Q ss_pred chhhhhhhhhhhhcchhhhHHHHHhhHHH--HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC
Q 035871 733 SSEDIKESAKAFQSGSEQWSEMIEKHMPL--ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV 810 (1127)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~W~~iie~~Lp~--~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~ 810 (1127)
... ...++...+.. ..++.+..|.-.|+.|+..+++.. ..+..++..| ...+.+++
T Consensus 269 --------------~~~-~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~------~l~~~a~~~L-~~~L~~~d 326 (618)
T 1w63_A 269 --------------SEA-MNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES------GLRVLAINIL-GRFLLNND 326 (618)
T ss_dssp --------------HHT-THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH------HHHHHHHHHH-HHHHTCSS
T ss_pred --------------HHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH------HHHHHHHHHH-HHHHhCCC
Confidence 000 11223332221 122345689999999999987532 2223455533 35578899
Q ss_pred HhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHH
Q 035871 811 ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSH 890 (1127)
Q Consensus 811 ~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~ 890 (1127)
+.||..|.++||.++. .++..+......++..+.|++..||.+|...|.++++. . .+ ..
T Consensus 327 ~~vr~~aL~~L~~i~~-----~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~-------------nv-~~ 385 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQ-----TDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--N-------------NI-RG 385 (618)
T ss_dssp TTTHHHHHHHHHHHHH-----HHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--S-------------ST-HH
T ss_pred CchHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--c-------------cH-HH
Confidence 9999999999999963 23444455567788888999999999999999999873 0 11 23
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhh
Q 035871 891 LMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 891 lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl 970 (1127)
++..|.+.+ .++++.+|..+++++|.+..-.. ++ .+..++.|++.+++++..|+-.+..++-.+
T Consensus 386 iv~eL~~~l---~~~d~e~r~~~v~~I~~la~k~~----------~~---~~~~v~~ll~lL~~~~~~v~~~~~~~l~~i 449 (618)
T 1w63_A 386 MMKELLYFL---DSCEPEFKADCASGIFLAAEKYA----------PS---KRWHIDTIMRVLTTAGSYVRDDAVPNLIQL 449 (618)
T ss_dssp HHHHHHHHH---HHCCHHHHHHHHHHHHHHHHSSC----------CC---HHHHHHHHHHHHHHTGGGSCSSHHHHHHHH
T ss_pred HHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhC----------cc---HHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 445555543 23556899999999999974221 11 467899999999887778888888999888
Q ss_pred hccccccccCCCchhHHHHHHHHHHhc-CCChHHHHHHHHHhc
Q 035871 971 FLNETINLEDMDWAPSVFSILLLLLRD-SSNFKIRIQAAAALA 1012 (1127)
Q Consensus 971 ~~n~~i~~~~~~wa~~v~~~Ll~ll~~-~~NFKVRi~AA~AL~ 1012 (1127)
+.+. +.....++..|+..+.+ +.+-.++..+++.||
T Consensus 450 i~~~------p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 450 ITNS------VEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHS------CSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HhcC------hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 8642 23456789999999986 344455557899999
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.89 E-value=6.5e-09 Score=110.17 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=136.6
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVISCF-PQVSQSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..++|.++.+|-+|+.+|+.++.. |.+... . +.++++.|...+. |++..||..|+-+||.|+..+...
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-------- 91 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENG-E-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-------- 91 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-C-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--------
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCC-C-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--------
Confidence 456899999999999999998754 554321 2 3678888888895 999999999999999999876532
Q ss_pred CCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccch
Q 035871 882 SIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQ 960 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVR 960 (1127)
+. ..+..++...+...+|+. .||..|..||..+..... .+.+++.|...++++|..||
T Consensus 92 -----~~-~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---------------~~~ll~~l~~~l~~~~~~vr 150 (242)
T 2qk2_A 92 -----FS-NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---------------LEAQQESIVESLSNKNPSVK 150 (242)
T ss_dssp -----GH-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHHHTTCSCHHHH
T ss_pred -----HH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHcCCChHHH
Confidence 21 235556666666777776 799999999999973211 46788999999999999999
Q ss_pred hhHHHHHHhhhcc--ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 961 WNVCRALSNLFLN--ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 961 WNAc~ALGnl~~n--~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
-+++..||.++.+ +... ..+..+.+.+.|..++ ++++.+||-.|..+|+.
T Consensus 151 ~~~l~~l~~~l~~~~~~~~--~~~~l~~l~p~l~~~l-~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 151 SETALFIARALTRTQPTAL--NKKLLKLLTTSLVKTL-NEPDPTVRDSSAEALGT 202 (242)
T ss_dssp HHHHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHH
Confidence 9999999998754 2110 1134468999999999 56999999999999983
No 50
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.83 E-value=1.5e-06 Score=109.76 Aligned_cols=215 Identities=11% Similarity=0.100 Sum_probs=122.1
Q ss_pred cCChhHHHHHHHHHhccchh---HHhhcch-----hHHHHHHHHHHhhhccCC---CHhHHHHHHHHHhhhhcccccccc
Q 035871 765 HISSMVRTAAVTCFAGITSS---VFFSLLK-----ETQEFIISSLIDSALHDD---VASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~---~f~~Lp~-----~~q~~~i~~Lll~~~~De---~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
+++...|.+|.-++|.|... .-..... +-..++... ++..+.|. +|.||++||++||.|.-. + .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~-v~p~l~~~~~~~p~vr~~a~~~lg~~~~~--~--~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKE-IAPDLTSNNIPHIILRVDAIKYIYTFRNQ--L--T 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHH-THHHHHCSSCSCHHHHHHHHHHHHHTGGG--S--C
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHH-hHHHhcCCCCCCceehHHHHHHHHHHHhh--C--C
Confidence 34557899999999887311 1000000 222333332 33445666 899999999999999642 2 2
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhc-ccccCCCCCCcccccHHHHHHHHHHHHhhccCC----ch
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHC-IDDFAFKPSIDSNANSHLMASLTESALNLTKDG----DK 908 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~-~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~----DK 908 (1127)
..+...+++.++..+.|++..||..|+|||.++++..... .....+....-...-+.++..|.+ +.+.. .|
T Consensus 491 ~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~----ll~~~~~~~~~ 566 (960)
T 1wa5_C 491 KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA----LILKHGSSPEK 566 (960)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH----HHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHH----HHHhccCCCCc
Confidence 4578889999999999999999999999999999742100 000000000000122344444443 33332 12
Q ss_pred --hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc----c-CCccchhhHHHHHHhhhccccccccCC
Q 035871 909 --IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT----T-GNVKVQWNVCRALSNLFLNETINLEDM 981 (1127)
Q Consensus 909 --VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~----~-~n~KVRWNAc~ALGnl~~n~~i~~~~~ 981 (1127)
....+..||+.+...+..+ + ....+.+++.|+..+. + .+...+-.++-+||.+.+... +....
T Consensus 567 ~~~~e~l~~al~~vv~~~~~~-~--------~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~-~~~~~ 636 (960)
T 1wa5_C 567 LAENEFLMRSIFRVLQTSEDS-I--------QPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ-RQNLP 636 (960)
T ss_dssp HTSCHHHHHHHHHHHHHHTTT-T--------GGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC-GGGHH
T ss_pred ccccHHHHHHHHHHHHHHHHh-h--------hhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-cchHH
Confidence 4457888999887665432 1 1134555555555442 2 355666667888888876510 00111
Q ss_pred CchhHHHHHHHHHHhcC
Q 035871 982 DWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 982 ~wa~~v~~~Ll~ll~~~ 998 (1127)
+..+.+++.+...+..+
T Consensus 637 ~~~~~~~p~~~~iL~~~ 653 (960)
T 1wa5_C 637 LLVDSMMPTFLTVFSED 653 (960)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 23455666666666543
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.82 E-value=1.9e-08 Score=120.81 Aligned_cols=208 Identities=18% Similarity=0.146 Sum_probs=147.0
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.+++++++.+|..+.-++..++.+. .+....+++.+ ..-+.|+|+.||..|.|+||.+. .....+..
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~-----~e~~~l~~n~l-~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l 122 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQ-----PDMAIMAVNSF-VKDCEDPNPLIRALAVRTMGCIR-------VDKITEYL 122 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHS-----HHHHHTTHHHH-GGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccC-----chHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHH
Confidence 3568889999999998888764421 22333455543 45678999999999999999984 34456777
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccH-HHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS-HLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~-~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
++.+...+.|+++.||.+|+|||+++... .+ +.+.+ .++..+ ..+.+|.| .|+.+|+.+|+
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~----------~p---~~~~~~~~~~~l----~~lL~d~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDI----------NA---QMVEDQGFLDSL----RDLIADSNPMVVANAVAALS 185 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHS----------SC---CCHHHHHHHHHH----HHTTSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhh----------Ch---hhcccccHHHHH----HHHhCCCChhHHHHHHHHHH
Confidence 88899999999999999999999999972 11 11221 233333 34567777 89999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
++..--+... ...+....+..|++.+.+.+.-++-....+|+++...+ ..-...+++.|..++. +
T Consensus 186 ~i~~~~~~~~--------~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~------~~~~~~~l~~l~~~l~-~ 250 (591)
T 2vgl_B 186 EISESHPNSN--------LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD------DREAQSICERVTPRLS-H 250 (591)
T ss_dssp HHTTSCCSCC--------SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS------HHHHHHHHHHHTTCSC-S
T ss_pred HHHhhCCCcc--------chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHHc-C
Confidence 9963211100 01235667888888888877766666777777766321 1234678888888885 5
Q ss_pred CChHHHHHHHHHhcC
Q 035871 999 SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~ 1013 (1127)
.|-.||..|+.++..
T Consensus 251 ~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 251 ANSAVVLSAVKVLMK 265 (591)
T ss_dssp STTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 778999999999974
No 52
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.78 E-value=2.9e-08 Score=124.42 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=133.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhcc--chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGI--TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV 830 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~I--gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L 830 (1127)
++++.++| .+.+.++.+|..|+-+||.| |+.. ..++..++.-+..|++..||..|+-+||.+.+
T Consensus 472 ev~e~L~~-~L~dd~~~~~~~AalALGli~vGTgn---------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~---- 537 (963)
T 4ady_A 472 EVYEALKE-VLYNDSATSGEAAALGMGLCMLGTGK---------PEAIHDMFTYSQETQHGNITRGLAVGLALINY---- 537 (963)
T ss_dssp HHHHHHHH-HHHTCCHHHHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHhhhhcccCC---------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC----
Confidence 34444444 45666678899999999976 4322 11233333334467778899999999997632
Q ss_pred ccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchh
Q 035871 831 SQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKI 909 (1127)
Q Consensus 831 ~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKV 909 (1127)
++ +..++.++..+ .|.++.||.-|+.+||--+-.. =+...+..|++.+. .+.+|.|
T Consensus 538 g~-----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT----------------Gn~~aIq~LL~~~~--~d~~d~V 594 (963)
T 4ady_A 538 GR-----QELADDLITKMLASDESLLRYGGAFTIALAYAGT----------------GNNSAVKRLLHVAV--SDSNDDV 594 (963)
T ss_dssp TC-----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS----------------CCHHHHHHHHHHHH--HCSCHHH
T ss_pred CC-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC----------------CCHHHHHHHHHHhc--cCCcHHH
Confidence 32 23444444433 5789999999999998444210 11234666766654 2445689
Q ss_pred hhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-ccCCccchhhHHHHHHhhhccccccccCCCchhHHH
Q 035871 910 KSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVF 988 (1127)
Q Consensus 910 RsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~ 988 (1127)
|..||-|||.++ . |++ .++..++..+ +++|+.||++|+.|||.+.... ....++
T Consensus 595 RraAViaLGlI~-------~------g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn--------~~~~ai 649 (963)
T 4ady_A 595 RRAAVIALGFVL-------L------RDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK--------GLQSAI 649 (963)
T ss_dssp HHHHHHHHHHHT-------S------SSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS--------CCHHHH
T ss_pred HHHHHHHHHhhc-------c------CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC--------CcHHHH
Confidence 999999999984 1 222 2344555544 5789999999999999997321 135689
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 989 SILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 989 ~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+.|..+. +|++-.||.+|+.|||-++
T Consensus 650 d~L~~L~-~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 650 DVLDPLT-KDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHH-TCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHc-cCCCHHHHHHHHHHHHHHh
Confidence 9888777 5677789999999998443
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.72 E-value=1.1e-07 Score=100.62 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=130.5
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccccc-hHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVSQS-AEIID 838 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~~d-~~fv~ 838 (1127)
..+++.+...|.+|+.+|..+-...-.....+. ..++..+ ..++ +|.++.||.+|+.+||.++. .++.+ ..|++
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L-~~~l~kd~~~~V~~~a~~~l~~la~--~l~~~~~~~~~ 97 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSAL-KKVITKDSNVVLVAMAGKCLALLAK--GLAKRFSNYAS 97 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHH--HHGGGGHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHH-HHHhccCCCHHHHHHHHHHHHHHHH--HHhhhHHHHHH
Confidence 456788899999999999987543101111222 2345433 4666 59999999999999999972 12221 35788
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRAL 917 (1127)
.+++.|+..+.|++..||..|.-||.++..... + +.++..+ +.+.++ +..||.+++..|
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---------------~-~~ll~~l----~~~l~~~~~~vr~~~l~~l 157 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---------------L-EAQQESI----VESLSNKNPSVKSETALFI 157 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---------------H-HHHHHHH----HHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---------------H-HHHHHHH----HHHHcCCChHHHHHHHHHH
Confidence 899999999999999999999999999986421 1 2233344 333454 448999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
|.++.-..++. ........+++.|.+++.+.+.+||-.|..++|.+..
T Consensus 158 ~~~l~~~~~~~-------~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 158 ARALTRTQPTA-------LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHTTCCGGG-------CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCC-------ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 99764432221 1123568899999999999999999999999999864
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.71 E-value=8.1e-09 Score=114.75 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=100.5
Q ss_pred HHHHHHH-hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHH
Q 035871 840 FIHAVEI-NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGL 917 (1127)
Q Consensus 840 ai~aLl~-~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRAL 917 (1127)
.++.++. .+.+++..||..|+|+|||+...-..... ..+....+..|++.+ ..+ ++.||.+|+.||
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~---------~vv~~g~l~~Ll~LL---~~~~~~~v~~~A~~AL 149 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE---------QVLGLGALRKLLRLL---DRDACDTVRVKALFAI 149 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH---------HHHHTTHHHHHHHHH---HHCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH---------HHHHCCCHHHHHHHH---ccCCCHHHHHHHHHHH
Confidence 3456667 78899999999999999999842100000 011112244444321 123 458999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHH-HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWL-ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~-E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
+||.+--+.. ...+. ..+++.|+..+.+++.+||-+||+||+++.....-... .--..-+++.|+.+|.
T Consensus 150 snl~~~~~~~---------~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~-~vv~~g~i~~Lv~LL~ 219 (296)
T 1xqr_A 150 SCLVREQEAG---------LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG-TLCSMGMVQQLVALVR 219 (296)
T ss_dssp HHHHTTCHHH---------HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHTTHHHHHHHHHT
T ss_pred HHHHcCCcHH---------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH-HHHHcCCHHHHHHHHc
Confidence 9997422210 00111 35788999999999999999999999999754210000 0011237899999995
Q ss_pred cCCChHHHHHHHHHhcCCC
Q 035871 997 DSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+++.+||..|+.||+...
T Consensus 220 -~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 220 -TEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp -SCCSTHHHHHHHHHHHHH
T ss_pred -CCChhHHHHHHHHHHHHH
Confidence 578999999999997543
No 55
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.68 E-value=2.7e-07 Score=107.52 Aligned_cols=238 Identities=17% Similarity=0.122 Sum_probs=147.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHH-----HHHHHhhhcc-CCCHhHHHHHHHHHhhhhcccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFI-----ISSLIDSALH-DDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~-----i~~Lll~~~~-De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
.|-.++.++++.++..|+.||.+|... ..+.+..+ +..|+ .++. +.++.|+..|+++|++++..+..+
T Consensus 48 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~-----~~~~k~~i~~~G~i~~Lv-~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 48 KLVDLLRSPNQNVQQAAAGALRNLVFR-----STTNKLETRRQNGIREAV-SLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHSS-----CHHHHHHHHHTTCHHHHH-HHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHH-HHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 344567788899999999999998542 12334433 34343 6666 778999999999999998766554
Q ss_pred cchHHHHHHHHHHHHhc--------CCC--------CcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccH-HHHHH
Q 035871 832 QSAEIIDKFIHAVEINT--------HDP--------LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS-HLMAS 894 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l--------~D~--------~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~-~lL~~ 894 (1127)
. .+++.+++.|+..+ .++ +..|+..|+|+|+||+.. ..+... .... ..+..
T Consensus 122 ~--~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~---------i~~~~g~i~~ 189 (457)
T 1xm9_A 122 E--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQT---------MRNYSGLIDS 189 (457)
T ss_dssp H--HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHH---------HTTSTTHHHH
T ss_pred H--HHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHH---------HHHcCCCHHH
Confidence 3 23457888888888 333 345566999999999975 221110 0100 12333
Q ss_pred HH---HHHHhhccCCchhhhhHHHHHhhhhhccccC-----------------------CCCC------------CCC--
Q 035871 895 LT---ESALNLTKDGDKIKSNAVRGLGNLSRFVKYT-----------------------SSSH------------PAS-- 934 (1127)
Q Consensus 895 L~---e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~-----------------------~~~~------------~~~-- 934 (1127)
|+ +..+...+.+++++.||+.+|.|+..-...+ -++. |+.
T Consensus 190 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
T 1xm9_A 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269 (457)
T ss_dssp HHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCC
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccc
Confidence 33 3222112245689999999999985211000 0000 000
Q ss_pred ----CC-ChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccccCC--Cc--hhHHHHHHHHHHhcCCChHHH
Q 035871 935 ----LG-DSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDM--DW--APSVFSILLLLLRDSSNFKIR 1004 (1127)
Q Consensus 935 ----~g-~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~--~w--a~~v~~~Ll~ll~~~~NFKVR 1004 (1127)
.| ...|...+++.|+..+.+ ++..++=+||+||+|+.....-..... .. ...+++.|..+|. +.+++||
T Consensus 270 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~-~~~~~v~ 348 (457)
T 1xm9_A 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVV 348 (457)
T ss_dssp CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT-CSCHHHH
T ss_pred ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh-CCCHhHH
Confidence 01 112446678888888865 568999999999999975321000000 00 0235689999995 5789999
Q ss_pred HHHHHHhcCC
Q 035871 1005 IQAAAALAVP 1014 (1127)
Q Consensus 1005 i~AA~AL~~p 1014 (1127)
..|+.||+..
T Consensus 349 ~~A~~aL~nl 358 (457)
T 1xm9_A 349 RSGASLLSNM 358 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999844
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.67 E-value=9.6e-07 Score=106.90 Aligned_cols=237 Identities=13% Similarity=0.142 Sum_probs=152.0
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv 837 (1127)
+-.-++|+++.+|+.|+++||+|+...+ -+.++. .+..++.|.+|.||.+|+.++|.+. .+|.+ +
T Consensus 112 l~kDL~~~n~~vr~lAL~~L~~i~~~~~-------~~~l~~-~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~------v 177 (618)
T 1w63_A 112 IKNDLNHSTQFVQGLALCTLGCMGSSEM-------CRDLAG-EVEKLLKTSNSYLRKKAALCAVHVIRKVPEL------M 177 (618)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHCCHHH-------HHHHHH-HHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG------G
T ss_pred HHHhcCCCCHhHHHHHHHHHHhcCCHHH-------HHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHChHH------H
Confidence 4456789999999999999999986542 123444 3457789999999999999999986 34433 3
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh---cc-----------ccc---CC-CCCC-cccccHHHHHHHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRH---CI-----------DDF---AF-KPSI-DSNANSHLMASLTES 898 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~---~~-----------~~~---~~-~~~~-~~~is~~lL~~L~e~ 898 (1127)
+.+++.+...+.|++..|+..|.++|+.|+..-.. .. .+. .. .++. ....++-....+++.
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 45677777888999999999999999999852100 00 000 00 0000 000011111111111
Q ss_pred HHhhcc-------------------------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 035871 899 ALNLTK-------------------------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT 953 (1127)
Q Consensus 899 aL~a~~-------------------------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~ 953 (1127)
.-.... .+..|...|+++++++. .++...+.+++.|.+.+.
T Consensus 258 L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~--------------~~~~l~~~a~~~L~~~L~ 323 (618)
T 1w63_A 258 LRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK--------------SESGLRVLAINILGRFLL 323 (618)
T ss_dssp HHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC--------------CCHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHHh
Confidence 111111 11235566666666552 123345678899999999
Q ss_pred cCCccchhhHHHHHHhhhccc-cccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC--chHHHHHH
Q 035871 954 TGNVKVQWNVCRALSNLFLNE-TINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK--SFSDVVQG 1030 (1127)
Q Consensus 954 ~~n~KVRWNAc~ALGnl~~n~-~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~--~~~~V~~~ 1030 (1127)
+++..||+-|..+|+.+.... .+. ......++.++. +++..||..|...|.. .++ ....++.-
T Consensus 324 ~~d~~vr~~aL~~L~~i~~~~p~~~-------~~~~~~i~~~l~-d~d~~Ir~~alelL~~------l~~~~nv~~iv~e 389 (618)
T 1w63_A 324 NNDKNIRYVALTSLLKTVQTDHNAV-------QRHRSTIVDCLK-DLDVSIKRRAMELSFA------LVNGNNIRGMMKE 389 (618)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHHHHH-------GGGHHHHHHGGG-SSCHHHHHHHHHHHHH------HCCSSSTHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhCHHHH-------HHHHHHHHHHcc-CCChhHHHHHHHHHHH------HcccccHHHHHHH
Confidence 999999999999999998652 111 123457777774 5778899999999972 333 35667777
Q ss_pred HHHHHHH
Q 035871 1031 LEHILEN 1037 (1127)
Q Consensus 1031 L~~aLe~ 1037 (1127)
|..-+++
T Consensus 390 L~~~l~~ 396 (618)
T 1w63_A 390 LLYFLDS 396 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777665
No 57
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.65 E-value=1.2e-07 Score=107.88 Aligned_cols=226 Identities=19% Similarity=0.143 Sum_probs=140.0
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhH---HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH-HHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKET---QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII-DKFIH 842 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~---q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv-~~ai~ 842 (1127)
++.+|..|+.+|.+|....= . .+.. ...+|..|+ .+++.+++.|+..|++||++++.-+.-..-..++ ..+++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~-~-~k~~i~~~~GaIp~LV-~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDV-A-NKATLCSMKGCMRALV-AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCH-H-HHHHHHHCHHHHHHHH-HGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCH-H-HHHHHHHcCCcHHHHH-HHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHH
Confidence 46899999999999853210 0 0111 123466554 7788899999999999999996421100001111 24577
Q ss_pred HHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccc-cHHHHHHHHHHHHhhccCCc--hhhhhHHHHHh
Q 035871 843 AVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA-NSHLMASLTESALNLTKDGD--KIKSNAVRGLG 918 (1127)
Q Consensus 843 aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~i-s~~lL~~L~e~aL~a~~D~D--KVRsnAvRALG 918 (1127)
.|+.. ++..+..|+..|+++|+||+..-..+... .. ....+..|++. ++..++.+ +|+.+|+.+|.
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~---------i~~~~Gai~~Lv~l-L~~~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKAD---------ICAVDGALAFLVGT-LTYRSQTNTLAIIESGGGILR 243 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH---------HHHSTTHHHHHHHH-TTCCCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH---------HHHhcCcHHHHHHH-hccCCCcccHHHHHHHHHHHH
Confidence 77775 46677899999999999998621111000 00 11224444432 11111211 59999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc-cccccccCCCchhHHHHHHHHHHhc
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL-NETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~-n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
||...+...+-. .....-..+|+.|++.+.+++.+|+-|||.||+|+-. ++.-. . .=...-+++.|+.++.
T Consensus 244 nLs~~~a~~~~~-----~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~-~i~~~G~i~~Lv~LL~- 315 (354)
T 3nmw_A 244 NVSSLIATNEDH-----RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-E-ALWDMGAVSMLKNLIH- 315 (354)
T ss_dssp HHHHHHTTCHHH-----HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-H-HHHHTTHHHHHHTTTT-
T ss_pred HHHhhccCCHHH-----HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHH-H-HHHHCCCHHHHHHHHh-
Confidence 997532211100 0000112468899999999999999999999999973 33211 0 0012236899999995
Q ss_pred CCChHHHHHHHHHhcC
Q 035871 998 SSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~ 1013 (1127)
+++.+||.+|+.||..
T Consensus 316 s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 316 SKHKMIAMGSAAALRN 331 (354)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5889999999999973
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.64 E-value=1.8e-07 Score=108.92 Aligned_cols=228 Identities=14% Similarity=0.019 Sum_probs=148.0
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHH-----HHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc-ccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQ-----EFIISSLIDSALHDDVASVRSAACRAIGVISCF-PQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q-----~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~-p~L~~ 832 (1127)
|-..|+.+++.+|..|+.+|.++.... .+.+ ...|..| ..+++++++.|+..|+++|+++... +..+.
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~-----~~~~~~i~~~g~i~~L-v~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-----ESAKQQVYQLGGICKL-VDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSC-----SSHHHHHHHTTHHHHH-HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHcCCHHHH-HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 335677888999999999999975211 1111 1234434 4777889999999999999999753 22211
Q ss_pred chHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhh-----cc--
Q 035871 833 SAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNL-----TK-- 904 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a-----~~-- 904 (1127)
...-..+++.|+..+. +++..||..|+|+|+||+.. -.+. ...+. ..+..|++....- ..
T Consensus 81 -~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~---------~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 81 -ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELK---------EELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp -HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTH---------HHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred -HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhH---------HHHHh-ccHHHHHHHHhccccccccCcc
Confidence 1111344788888888 78899999999999999964 1100 01222 4455555432100 01
Q ss_pred ------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHH--HHHHHHHHHhhcc------CCccchhhHHHHHHhh
Q 035871 905 ------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL--ERIVQALVSCVTT------GNVKVQWNVCRALSNL 970 (1127)
Q Consensus 905 ------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~--E~~i~aLlk~l~~------~n~KVRWNAc~ALGnl 970 (1127)
....|..+|+.||+||... ++. -.... +.+++.|+..+.+ .+.|+.-||+.+|.|+
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~--~~~--------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSA--DAG--------RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTS--HHH--------HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred chhcccccHHHHHHHHHHHHHHccC--HHH--------HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 1235677999999999743 111 00111 2577788877764 4688999999999887
Q ss_pred hccc----------------------------------------cccc---------cCCCchhHHHHHHHHHHhcCCCh
Q 035871 971 FLNE----------------------------------------TINL---------EDMDWAPSVFSILLLLLRDSSNF 1001 (1127)
Q Consensus 971 ~~n~----------------------------------------~i~~---------~~~~wa~~v~~~Ll~ll~~~~NF 1001 (1127)
-... .++. ...-|...+++.|+.+|.++++-
T Consensus 219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 298 (457)
T 1xm9_A 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298 (457)
T ss_dssp TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH
Confidence 3110 0000 01236678899999999999999
Q ss_pred HHHHHHHHHhcCC
Q 035871 1002 KIRIQAAAALAVP 1014 (1127)
Q Consensus 1002 KVRi~AA~AL~~p 1014 (1127)
+|+..|+.||+..
T Consensus 299 ~~~e~a~~aL~nl 311 (457)
T 1xm9_A 299 ATLEACAGALQNL 311 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999643
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.64 E-value=2.2e-05 Score=98.49 Aligned_cols=193 Identities=13% Similarity=0.058 Sum_probs=119.6
Q ss_pred HHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc----cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHH
Q 035871 770 VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL----HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVE 845 (1127)
Q Consensus 770 VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~----~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl 845 (1127)
.|.++.++|..+. ..++.+.-..+.. .+...+ .+.++..|-+|+.++|.++-...- +...++..+++. +
T Consensus 423 ~r~~~~~~L~~~~----~~~~~~~l~~~~~-~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-~~~~~l~~l~~~-l 495 (963)
T 2x19_B 423 YRVDISDTLMYVY----EMLGAELLSNLYD-KLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-NYSDVVPGLIGL-I 495 (963)
T ss_dssp HHHHHHHHHHHHH----HHHTHHHHHHHHH-HHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-SCCSHHHHHHHH-G
T ss_pred HHHHHHHHHHHHH----HHccHHHHHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHH-H
Confidence 4777777776543 1222222222332 222333 567889999999999999733222 223456666663 3
Q ss_pred HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccc
Q 035871 846 INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 846 ~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~ 925 (1127)
..+.+++..||..+.|+||.+++-+..+. +.+..+++..+...+| ++|+..|+.|+.++.+-..
T Consensus 496 ~~l~~~~~~vr~~~~~~l~~~~~~l~~~~---------------~~l~~vl~~l~~~l~~-~~V~~~A~~al~~l~~~~~ 559 (963)
T 2x19_B 496 PRISISNVQLADTVMFTIGALSEWLADHP---------------VMINSVLPLVLHALGN-PELSVSSVSTLKKICRECK 559 (963)
T ss_dssp GGSCCCSHHHHHHHHHHHHHTHHHHHHCH---------------HHHTTTHHHHHHHTTC-GGGHHHHHHHHHHHHHHTG
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhCH---------------HHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHH
Confidence 35566788899999999999998765321 2333444444444555 7899999999999986543
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhhccC--CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHH
Q 035871 926 YTSSSHPASLGDSRWLERIVQALVSCVTTG--NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 926 ~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~--n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
.. +. ...+.+++.|.+.+..+ +.++|-.+..|+|.+...-. .....+....+.+.|...+
T Consensus 560 ~~-l~--------p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l 621 (963)
T 2x19_B 560 YD-LP--------PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQL 621 (963)
T ss_dssp GG-CT--------TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HH-HH--------hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 22 21 13678888888888753 46789899999999875421 1111233444554444444
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.60 E-value=2.1e-06 Score=107.94 Aligned_cols=186 Identities=11% Similarity=0.122 Sum_probs=118.8
Q ss_pred CChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC--------HhHHHHHHHHHhhhhcccccccchHHH
Q 035871 766 ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV--------ASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 766 ~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~--------~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
+++.+|..|+-+||-|+..... + ++. +|...+.+.+ +.||..|+.+||.+.+ +...
T Consensus 407 ~~~~ik~GAllaLGli~ag~~~----~----~~~-lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~----GS~~--- 470 (963)
T 4ady_A 407 SSRFIKGGSLYGLGLIYAGFGR----D----TTD-YLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM----GSAN--- 470 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTH----H----HHH-HHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST----TCCC---
T ss_pred CcHHHHHHHHHHHHHhcCCCcH----H----HHH-HHHHHHcCccccccccccHHHHHHHHHHHHHHhc----CCCC---
Confidence 4689999999999998776531 1 222 2223334333 7899999999998632 2211
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhh--hhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANI--CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVR 915 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL--~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvR 915 (1127)
+++++.|...+.|++..+|.-|++|||-+ |.. +.+.+..|++.+. ..++|+||..|+-
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg------------------n~~ai~~LL~~~~--e~~~e~vrR~aal 530 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG------------------KPEAIHDMFTYSQ--ETQHGNITRGLAV 530 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------------------CHHHHHHHHHHHH--HCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------------------CHHHHHHHHHHHh--ccCcHHHHHHHHH
Confidence 46778888888888888999999999976 211 1234556666554 3567799999999
Q ss_pred HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc-cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT-TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~-~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
+||.+. .|++. .++.|++.+. +.++-||+-|++|+|-.+-.. ....+++.|+..
T Consensus 531 gLGll~-------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAyaGT--------Gn~~aIq~LL~~ 585 (963)
T 4ady_A 531 GLALIN-------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALAYAGT--------GNNSAVKRLLHV 585 (963)
T ss_dssp HHHHHT-------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS--------CCHHHHHHHHHH
T ss_pred HHHhhh-------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHH
Confidence 999773 12222 2333444432 456677777777766443211 124566666666
Q ss_pred HhcCCChHHHHHHHHHhc
Q 035871 995 LRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~ 1012 (1127)
+.++.+-.||..|+.|||
T Consensus 586 ~~~d~~d~VRraAViaLG 603 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALG 603 (963)
T ss_dssp HHHCSCHHHHHHHHHHHH
T ss_pred hccCCcHHHHHHHHHHHH
Confidence 666666667777777766
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.58 E-value=1.2e-07 Score=105.48 Aligned_cols=150 Identities=19% Similarity=0.109 Sum_probs=99.6
Q ss_pred hh-hccCCCHhHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCC
Q 035871 803 DS-ALHDDVASVRSAACRAIGVISCF-PQVSQSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAF 879 (1127)
Q Consensus 803 l~-~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~ 879 (1127)
.. ++++.++.||..|+++||+++.- |..++ ...-..+++.|+..+. |++..||.+|+|||+||+..-......
T Consensus 87 v~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~-~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~--- 162 (296)
T 1xqr_A 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE-QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ--- 162 (296)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH-HHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH---
Confidence 35 77899999999999999999731 11111 1111246788888776 668999999999999998421110000
Q ss_pred CCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 880 KPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 880 ~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
.+....+..|++. + ..++.+||..|+.||+||... ..+. .....-..+++.|++.+.+++.+|
T Consensus 163 ------~~~~ggi~~L~~l-L--~~~d~~v~~~A~~aLs~L~~~-~~~~-------~~~vv~~g~i~~Lv~LL~~~d~~v 225 (296)
T 1xqr_A 163 ------FLRLDGFSVLMRA-M--QQQVQKLKVKSAFLLQNLLVG-HPEH-------KGTLCSMGMVQQLVALVRTEHSPF 225 (296)
T ss_dssp ------HHHTTHHHHHHHH-H--HSSCHHHHHHHHHHHHHHHHH-CGGG-------HHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred ------HHHCCCHHHHHHH-H--cCCCHHHHHHHHHHHHHHHhC-ChHH-------HHHHHHcCCHHHHHHHHcCCChhH
Confidence 0001123333332 1 134558999999999999743 1110 001123457889999999999999
Q ss_pred hhhHHHHHHhhhcc
Q 035871 960 QWNVCRALSNLFLN 973 (1127)
Q Consensus 960 RWNAc~ALGnl~~n 973 (1127)
|=.|+.||||+...
T Consensus 226 ~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 226 HEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999865
No 62
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.57 E-value=2.5e-05 Score=98.41 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=92.1
Q ss_pred CCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcC--CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccc
Q 035871 809 DVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH--DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSN 886 (1127)
Q Consensus 809 e~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~--D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~ 886 (1127)
.++..|-||+.++|.+.--..-. ...++...++ ++..+. |+++.||..|.|+||.+++-+..+. .
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~-~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-----------~ 542 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGE-EKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-----------A 542 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------------
T ss_pred CcHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-----------H
Confidence 67889999999999986322211 1234556666 444444 7799999999999999998765321 1
Q ss_pred ccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC--CccchhhHH
Q 035871 887 ANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG--NVKVQWNVC 964 (1127)
Q Consensus 887 is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~--n~KVRWNAc 964 (1127)
.-+.++..|++ .. | .+|+..|+.|+.+|.+-+... + ....+.+++.|.+.+..+ +.+++-.+.
T Consensus 543 ~l~~vl~~l~~----~l-~-~~v~~~A~~al~~l~~~~~~~-l--------~p~~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 543 YIPPAINLLVR----GL-N-SSMSAQATLGLKELCRDCQLQ-L--------KPYADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp CHHHHHHHHHH----HH-H-SSCHHHHHHHHHHHHHHCHHH-H--------HHHHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHH----Hh-C-hHHHHHHHHHHHHHHHHHHHh-c--------cccHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 22233444443 34 3 789999999999998544321 1 124677888888888764 468999999
Q ss_pred HHHHhhhcc
Q 035871 965 RALSNLFLN 973 (1127)
Q Consensus 965 ~ALGnl~~n 973 (1127)
.|+|.+...
T Consensus 608 ~ai~~i~~~ 616 (971)
T 2x1g_F 608 FSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999864
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.52 E-value=5.9e-07 Score=108.44 Aligned_cols=227 Identities=19% Similarity=0.142 Sum_probs=145.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc--cccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCF--PQVS 831 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~--p~L~ 831 (1127)
|...|+..++.++..|+.+|.++.... .+.+. ..|..|+ .+++..++.|+..|++||++++.. +.-+
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~-----~~~k~~V~~~G~Ip~LV-~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRN-----DKVKTDVRKLKGIPVLV-GLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHH-HGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHcCCcHHHH-HHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 445677888999999999998874311 12222 2445444 778889999999999999999752 1111
Q ss_pred cchHHHHHHHHHHHHhcCC-CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh---------
Q 035871 832 QSAEIIDKFIHAVEINTHD-PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN--------- 901 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D-~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~--------- 901 (1127)
....-..+++.|+..+.. .+..|+..|+|+|.||+..= .+. ..+-...+..|++-.+.
T Consensus 127 -~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k----------~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 127 -IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIK----------MEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp -HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGH----------HHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred -HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhh----------HHHHhccHHHHHHHHhcccccccccc
Confidence 111123457888888875 57789999999999998620 000 01112233444432210
Q ss_pred -----h-ccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhH--HHHHHHHHHHhhcc------CCccchhhHHHHH
Q 035871 902 -----L-TKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRW--LERIVQALVSCVTT------GNVKVQWNVCRAL 967 (1127)
Q Consensus 902 -----a-~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~--~E~~i~aLlk~l~~------~n~KVRWNAc~AL 967 (1127)
. ..+.++|+.||+.+|.||...-.. ..... .+.+|+.|+..++. .+-|..=||+.+|
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~---------~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL 265 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSE---------ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHH---------HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHH---------HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHH
Confidence 0 012348999999999999621000 00001 12356677776653 5678999999999
Q ss_pred Hhhhccc--ccc--------------------cc--CCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 968 SNLFLNE--TIN--------------------LE--DMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 968 Gnl~~n~--~i~--------------------~~--~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.|+-..- .++ .. +.-|...+++.|+.++.++.+..|+.+|+.||.
T Consensus 266 ~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334 (584)
T ss_dssp HHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 9975431 110 00 112667889999999999999999999999995
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.51 E-value=5.1e-07 Score=102.69 Aligned_cols=192 Identities=17% Similarity=0.127 Sum_probs=123.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhc-cccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~ 832 (1127)
|-.+|..+++.+|..|+.+|.++.... ..+.+.. .|..|+--+.+..++.++..|+++|++++. .+..+
T Consensus 132 LV~LL~s~~~~v~~~A~~aL~nLs~~~----~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk- 206 (354)
T 3nmw_A 132 LVAQLKSESEDLQQVIASVLRNLSWRA----DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK- 206 (354)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTC----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhccC----CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh-
Confidence 445667788999999999999984310 0122222 344454323566788999999999999975 22221
Q ss_pred chHHH--HHHHHHHHHhcCCCCc----chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-C
Q 035871 833 SAEII--DKFIHAVEINTHDPLV----SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-D 905 (1127)
Q Consensus 833 d~~fv--~~ai~aLl~~l~D~~~----~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D 905 (1127)
..++ ..+++.|...+.+++. .|+..|+|+|.||+..+..+.+. ....+....+..|++ ..+ .
T Consensus 207 -~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~------~~~i~~~g~i~~Lv~----lL~~~ 275 (354)
T 3nmw_A 207 -ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH------RQILRENNCLQTLLQ----HLKSH 275 (354)
T ss_dssp -HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHTTTHHHHHHH----HTTCS
T ss_pred -HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH------HHHHHHcCCHHHHHH----HHcCC
Confidence 1222 4577888888876654 49999999999999632111100 000011122444443 234 4
Q ss_pred CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 906 GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 906 ~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
+++|+.+|+.||+||...-+ +. .....-..+|+.|++.+++++.++|=+||.||.|+..+.
T Consensus 276 ~~~v~~~A~~aL~nLa~~~~-~~-------~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARNP-KD-------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSCH-HH-------HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHhCCCH-HH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 45899999999999952100 00 001122456899999999999999999999999999774
No 65
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.49 E-value=5.4e-07 Score=105.94 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=123.7
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhc-ccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISC-FPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~ 831 (1127)
.|..+|..+++.++..||.||++|.... ..+.+.. .|..|+--+.+..++.|+..|+++|++++. .+..+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~----~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRA----DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSC----CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCC----CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 3445667788999999999999985310 0122222 344454323566788999999999999975 22221
Q ss_pred cchHHH--HHHHHHHHHhcCCCCc----chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-
Q 035871 832 QSAEII--DKFIHAVEINTHDPLV----SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK- 904 (1127)
Q Consensus 832 ~d~~fv--~~ai~aLl~~l~D~~~----~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~- 904 (1127)
..++ ..+++.|...+.+++. .|+..|+|+|.||+..+..+.+. . ...+....+..|++ +.+
T Consensus 323 --~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~---~---~~i~~~G~i~~Lv~----LL~~ 390 (458)
T 3nmz_A 323 --ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH---R---QILRENNCLQTLLQ----HLKS 390 (458)
T ss_dssp --HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH---H---HHHHHTTHHHHHHH----HSSC
T ss_pred --HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH---H---HHHHHcccHHHHHH----HHcC
Confidence 1222 3567888888876655 39999999999999632211100 0 00011112333433 344
Q ss_pred CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 905 DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 905 D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
.+++|+.+|++||+||...- .+. .....-..+|+.|++.+..++.++|=+||.||.|+..+.
T Consensus 391 ~~~~v~~~A~~aL~nLa~~~-~~~-------~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 391 HSLTIVSNACGTLWNLSARN-PKD-------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SCHHHHHHHHHHHHHHHSSC-HHH-------HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHHcCC-HHH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 44589999999999996210 000 001123567889999999999999999999999999764
No 66
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.35 E-value=1.4e-05 Score=102.05 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-----cCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 766 ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-----HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 766 ~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-----~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.+...|.+||-|+|.|....-....+.....++..+ +.++ +|..+.||+.+++++|.|.-| +..+..|+..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l-~~l~~~~~~~~~~~~v~~~~~~~lgry~~~--~~~~~~~l~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL-LDLTVKKRGKDNKAVVASDIMYVVGQYPRF--LKAHWNFLRTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH-HHHTTSSCSHHHHHHHHHHHHHHHHHCHHH--HHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH-HHHHhhhccccchHHHHHHHHHHHHHHHHH--HHhHHHHHHHH
Confidence 345779999999999854321110011123344433 2433 256788888899999988632 23356789999
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGN 919 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGn 919 (1127)
++.++..++|++..||..|+|||.++|......... ..+...+..-++++..+.+. ..+ .++-......|+|.
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~--~~~~~~~p~~~~il~~l~~~----~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI--QQPRESEPFIQTIIRDIQKT----TADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHS--CCTTCSSCHHHHHHHTHHHH----HTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCcHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875432110 01000001223444444332 222 22345678899999
Q ss_pred hhhccc
Q 035871 920 LSRFVK 925 (1127)
Q Consensus 920 Ll~~l~ 925 (1127)
+....+
T Consensus 616 ii~~~~ 621 (1049)
T 3m1i_C 616 IISEER 621 (1049)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 975544
No 67
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.23 E-value=1.8e-05 Score=95.71 Aligned_cols=241 Identities=16% Similarity=0.125 Sum_probs=148.3
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccC-CCHhHHHHHHHHHhhhhcccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHD-DVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~D-e~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
.|..+|..+++.++..|+.||.+|.... ..+.+.. .|..|+ .++.. .+..++..|+.+|.++...+..+
T Consensus 94 ~LV~LL~s~~~~vq~~Aa~AL~nLa~~~----~~~nk~~I~~~GaIp~LV-~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 94 VLVGLLDHPKKEVHLGACGALKNISFGR----DQDNKIAIKNCDGVPALV-RLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHTSSS----CHHHHHHHHHTTHHHHHH-HHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHccC----CHHHHHHHHHcCCHHHHH-HHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 4456677889999999999999986410 0223333 344344 55564 67889999999999998755543
Q ss_pred cchHHHHHHHHHHHHhc------------------CCCCcchhchHHHHHHhhhhhh---hhcccccCCCCCCcccccHH
Q 035871 832 QSAEIIDKFIHAVEINT------------------HDPLVSVRITASWALANICDSI---RHCIDDFAFKPSIDSNANSH 890 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l------------------~D~~~~VRikAAWALGNL~d~L---~~~~~~~~~~~~~~~~is~~ 890 (1127)
. .+++.+++.|...+ +-++..|+.+|+|+|.||+..= ...+-+ ...+.+
T Consensus 169 ~--~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-------~~Gli~- 238 (584)
T 3l6x_A 169 M--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-------CDGLVD- 238 (584)
T ss_dssp H--HHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-------STTHHH-
T ss_pred H--HHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-------cCCcHH-
Confidence 3 23455677776643 1225699999999999998521 110000 001111
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCC-----CCC--------C-C--CCCC-hhHHHHHHHHHHHhhc
Q 035871 891 LMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS-----SSH--------P-A--SLGD-SRWLERIVQALVSCVT 953 (1127)
Q Consensus 891 lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~-----~~~--------~-~--~~g~-~~~~E~~i~aLlk~l~ 953 (1127)
.|..+++..+...+.++++..||+.+|.||..-...+. +.. + + ..|- ..|--.+|..|++.++
T Consensus 239 ~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~ 318 (584)
T 3l6x_A 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318 (584)
T ss_dssp HHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc
Confidence 13333443332334566899999999999875542110 000 0 0 0111 1123467888999996
Q ss_pred c-CCccchhhHHHHHHhhhccccccccC---CCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 954 T-GNVKVQWNVCRALSNLFLNETINLED---MDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 954 ~-~n~KVRWNAc~ALGnl~~n~~i~~~~---~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
. .+..|+=||+.||.|+.....-.... .--....++.|..+|. +.+-+|+..|+.||+..
T Consensus 319 ~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~-s~~~~v~~~A~~aL~nL 382 (584)
T 3l6x_A 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT-NEHERVVKAASGALRNL 382 (584)
T ss_dssp HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 4 67999999999999996542100000 0001346899999995 57789999999999743
No 68
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.18 E-value=8.4e-06 Score=100.69 Aligned_cols=196 Identities=18% Similarity=0.133 Sum_probs=125.2
Q ss_pred HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcc---hhchHHHHHHhhhhhhhhc
Q 035871 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS---VRITASWALANICDSIRHC 873 (1127)
Q Consensus 797 ~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~---VRikAAWALGNL~d~L~~~ 873 (1127)
+++.| ..+++.+++.+|..|+|+|++++..+.-+.- ..-+-+++.|+..+.+.... +|..|++||+||+-.- +
T Consensus 458 vIp~L-v~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~--n 533 (778)
T 3opb_A 458 LISFL-KREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT--N 533 (778)
T ss_dssp HHHHH-HHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH-HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS--C
T ss_pred CHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH-HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC--C
Confidence 34433 3667789999999999999999866554431 11235578888887766554 8999999999998421 1
Q ss_pred ccccCCCCCCcccccHHHHHHHHHHHHhhccCCc---------------hhhhhHHHHHhhhhhcccc--CCCCCCCCCC
Q 035871 874 IDDFAFKPSIDSNANSHLMASLTESALNLTKDGD---------------KIKSNAVRGLGNLSRFVKY--TSSSHPASLG 936 (1127)
Q Consensus 874 ~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D---------------KVRsnAvRALGnLl~~l~~--~~~~~~~~~g 936 (1127)
.. ..|..+ +.. ..+..|++ +...++ .-+.+|.+||+||...-+. +.. .
T Consensus 534 p~-~~f~~~--~~~--~aI~pLv~----LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~------r 598 (778)
T 3opb_A 534 PG-LIFKKY--SAL--NAIPFLFE----LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV------C 598 (778)
T ss_dssp HH-HHSSSS--CST--THHHHHHH----TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH------H
T ss_pred HH-HHcCCC--ccc--cchHHHHH----HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH------H
Confidence 10 011110 011 23444443 223111 1278999999999733211 000 0
Q ss_pred ChhHH-HHHHHHHHHhhccCCccchhhHHHHHHhhhcccccc---ccCCCchhH---HHHHHHHHHhcCCChHHHHHHHH
Q 035871 937 DSRWL-ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN---LEDMDWAPS---VFSILLLLLRDSSNFKIRIQAAA 1009 (1127)
Q Consensus 937 ~~~~~-E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~---~~~~~wa~~---v~~~Ll~ll~~~~NFKVRi~AA~ 1009 (1127)
...+. +.+++.|...+.+++.-||-.||.++.|+..++.-. ..... .+. =++.|..++ +..++++|..|+.
T Consensus 599 ~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~-~~~~~~rL~lLV~Ll-~s~D~~~r~AAag 676 (778)
T 3opb_A 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE-NPQSLRNFNILVKLL-QLSDVESQRAVAA 676 (778)
T ss_dssp HHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS-SHHHHHHHHHHHHGG-GCSCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc-CchhhccHHHHHHHH-cCCCHHHHHHHHH
Confidence 01122 268889999999999999999999999999887521 11111 122 377888888 6799999999999
Q ss_pred HhcC
Q 035871 1010 ALAV 1013 (1127)
Q Consensus 1010 AL~~ 1013 (1127)
||+.
T Consensus 677 ALAn 680 (778)
T 3opb_A 677 IFAN 680 (778)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.17 E-value=0.0009 Score=81.29 Aligned_cols=381 Identities=15% Similarity=0.125 Sum_probs=222.3
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcC
Q 035871 496 HNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTS 575 (1127)
Q Consensus 496 Hr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~ 575 (1127)
-.++..-|++ .++-+..-+|++++.+.. +++++.++..++..+...+. +.+ +|..|.-|+..++...
T Consensus 113 iN~l~kDl~~-~n~~ir~lALr~L~~i~~--------~e~~~~l~~~v~~~l~~~d~---~~~-VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 113 NNAIKNDLAS-RNPTFMGLALHCIANVGS--------REMAEAFAGEIPKILVAGDT---MDS-VKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHCC--------HHHHHHHTTHHHHHHHCSSS---CHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHhhccCC--------HHHHHHHHHHHHHHHhCCCC---CHH-HHHHHHHHHHHHHHhC
Confidence 3456667776 456678889999998843 34666666666666632222 334 6667776776666533
Q ss_pred CChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhh
Q 035871 576 PAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAA 655 (1127)
Q Consensus 576 ~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~ 655 (1127)
|.. .+ ...|+..+.+.. .+.++.|..-|+.++..++.+.|....++...+...+.+++...
T Consensus 180 p~~-----------------~~-~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~ 240 (621)
T 2vgl_A 180 PDL-----------------VP-MGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSA 240 (621)
T ss_dssp GGG-----------------CC-CCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCC
T ss_pred hhh-----------------cC-chhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCC
Confidence 211 01 123455554444 24556889999999999998888755555555556666665321
Q ss_pred CCCCcccccCCCCCCCccccc---hhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCccccc
Q 035871 656 SPEVPAKAWKGHVGNTAGFIG---EKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQE 732 (1127)
Q Consensus 656 ~~~~~~~~~~g~~~~~~~l~g---~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~ 732 (1127)
+.+ .++-.++| +=.+ +++|+- ++.+ .-.+ +|
T Consensus 241 --~~~--------~~~~~~~~~~~~w~q---i~il~l-l~~~---~~~~------------------------d~----- 274 (621)
T 2vgl_A 241 --STD--------LQDYTYYFVPAPWLS---VKLLRL-LQCY---PPPE------------------------DP----- 274 (621)
T ss_dssp --SSS--------CSTTEETTEESHHHH---HHHHHH-GGGS---SSCS------------------------SH-----
T ss_pred --CCC--------ccchhhcCCCCchHH---HHHHHH-HHHh---CCCC------------------------CH-----
Confidence 010 00111111 1111 334431 1110 0000 00
Q ss_pred chhhhhhhhhhhhcchhhhHHHHHhhHHH--------HHccCCh--hHHHHHHHHHhccchhHHhhcchhHHHHHHHHHH
Q 035871 733 SSEDIKESAKAFQSGSEQWSEMIEKHMPL--------ILQHISS--MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLI 802 (1127)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~W~~iie~~Lp~--------~l~d~~~--~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Ll 802 (1127)
+ . ...-.++++.++.. .+++.++ .|.-.|+.++-.+++. .+....++..|
T Consensus 275 ---~---------~-~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~------~~~~~~~~~~L- 334 (621)
T 2vgl_A 275 ---A---------V-RGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE------PNLLVRACNQL- 334 (621)
T ss_dssp ---H---------H-HHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHH-
T ss_pred ---H---------H-HHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc------HHHHHHHHHHH-
Confidence 0 0 01112334444433 2334443 7777788888777632 22334455543
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
...+.+.++.+|..|.++|..++.-. .+..++......++..+. |++..||.+|--.|..+++.- |.
T Consensus 335 ~~~L~~~~~niry~aL~~l~~l~~~~---~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv------- 402 (621)
T 2vgl_A 335 GQFLQHRETNLRYLALESMCTLASSE---FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS--NA------- 402 (621)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHTTCT---TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HH-------
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh--hH-------
Confidence 35567889999999999999997311 123455666677777788 999999999999999988651 11
Q ss_pred CCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh
Q 035871 882 SIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW 961 (1127)
..++..|.+.+. +.++..|..+++++|.++.-... + .+..++.|++.++.+.-.|.-
T Consensus 403 -------~~Iv~eL~~yl~---~~d~~~~~~~v~~I~~la~k~~~----------~---~~~~v~~Ll~ll~~~~~~v~~ 459 (621)
T 2vgl_A 403 -------QQIVAEMLSYLE---TADYSIREEIVLKVAILAEKYAV----------D---YTWYVDTILNLIRIAGDYVSE 459 (621)
T ss_dssp -------HHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHCS----------S---THHHHHHHHHHHHHHGGGSCS
T ss_pred -------HHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCC----------c---HHHHHHHHHHHHHhhcccchH
Confidence 233444544432 23447999999999999743322 1 366888888888764444666
Q ss_pred hHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHH--HHHHHHhcCCCcccccCC
Q 035871 962 NVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIR--IQAAAALAVPSSVSDYGK 1022 (1127)
Q Consensus 962 NAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVR--i~AA~AL~~p~~R~~yG~ 1022 (1127)
-+...+-.+..+. +.-...++..|+..+.++ ..+.. .-|++-|| .||.
T Consensus 460 ev~~~l~~ii~~~------~~~~~~~~~~l~~~l~~~-~~~~~li~~~~wilG------Ey~~ 509 (621)
T 2vgl_A 460 EVWYRVIQIVINR------DDVQGYAAKTVFEALQAP-ACHENLVKVGGYILG------EFGN 509 (621)
T ss_dssp HHHHHHHHHHGGG------CSCHHHHHHHHHHHHTSS-SCCHHHHHHHHHHHH------HHTH
T ss_pred HHHHHHHHHHhCC------hhHHHHHHHHHHHHHcCc-cchHHHHHHHHHHhc------chHH
Confidence 6677777766442 122355778899999754 44433 35668888 5764
No 70
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.13 E-value=0.01 Score=74.55 Aligned_cols=195 Identities=9% Similarity=0.113 Sum_probs=128.3
Q ss_pred HHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhc----CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc
Q 035871 813 VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINT----HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN 888 (1127)
Q Consensus 813 VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l----~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is 888 (1127)
.|.++...|..+. ..+.. ..+..+.+.+...+ .+++...|-.|.|++|.+++.+.... .
T Consensus 423 ~r~~~~~~L~~~~--~~~~~--~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-------------~ 485 (963)
T 2x19_B 423 YRVDISDTLMYVY--EMLGA--ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-------------S 485 (963)
T ss_dssp HHHHHHHHHHHHH--HHHTH--HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-------------C
T ss_pred HHHHHHHHHHHHH--HHccH--HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-------------h
Confidence 3566665554442 11111 12233334444444 66788899999999999997643210 0
Q ss_pred HHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH
Q 035871 889 SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968 (1127)
Q Consensus 889 ~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG 968 (1127)
..+..+++.......++.+||..++.++|.+.+++... +...+.+++.|+..+.+ .+||-.||+|+.
T Consensus 486 -~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~----------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~ 552 (963)
T 2x19_B 486 -DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH----------PVMINSVLPLVLHALGN--PELSVSSVSTLK 552 (963)
T ss_dssp -SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC----------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHhCC--chHHHHHHHHHH
Confidence 13455666555566678899999999999998877642 23567788889888855 899999999999
Q ss_pred hhhccccccccCCCchhHHHHHHHHHHhcC-CChHHHHHHHHHhcCCCcc---cccCCchHHHHHHHHHHHHHhc
Q 035871 969 NLFLNETINLEDMDWAPSVFSILLLLLRDS-SNFKIRIQAAAALAVPSSV---SDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 969 nl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~-~NFKVRi~AA~AL~~p~~R---~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
++...- ...=.+..+.+++.|..++... -..++|..+-.|++..... .....++..+..-+...|+.+.
T Consensus 553 ~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 625 (963)
T 2x19_B 553 KICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLA 625 (963)
T ss_dssp HHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998531 1112367888999999988642 2568998887777643322 2233356667777778887763
No 71
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.11 E-value=3.4e-06 Score=91.51 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=30.6
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHh
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIG 822 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALG 822 (1127)
+-.++.|++++||..|+..|. .. ++..+.+|+++.||.+|+.+|+
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~---~~----------------~l~~L~~D~~~~VR~~aA~~L~ 99 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP---VE----------------ALTPLIRDSDEVVRRAVAYRLP 99 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC---GG----------------GGGGGTTCSSHHHHHHHHTTSC
T ss_pred HHHHhcCCCHHHHHHHHHhCC---HH----------------HHHHHccCcCHHHHHHHHHHCC
Confidence 334567888999999888542 11 2345667888888888887654
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.10 E-value=0.0011 Score=83.71 Aligned_cols=245 Identities=11% Similarity=0.108 Sum_probs=136.1
Q ss_pred CChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHH
Q 035871 766 ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAV 844 (1127)
Q Consensus 766 ~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aL 844 (1127)
.+...|.+|+-||+.|+...-... ...-..++. ++..+. +|.++.||.+|+++||.|.-+ +..+..|+..+++.|
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~--l~~~~~~l~~vl~~l 551 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNW--LMENPAYIPPAINLL 551 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHH--HC----CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHH
Confidence 456789999999999976542211 111123444 343444 367999999999999999732 223456788899999
Q ss_pred HHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhcc
Q 035871 845 EINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFV 924 (1127)
Q Consensus 845 l~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l 924 (1127)
+..+ | ..|+..|+|||.++|+....... ..-+.++..+.+. +....-+.+++..+..|+|.+...+
T Consensus 552 ~~~l-~--~~v~~~A~~al~~l~~~~~~~l~----------p~~~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 552 VRGL-N--SSMSAQATLGLKELCRDCQLQLK----------PYADPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHH-H--SSCHHHHHHHHHHHHHHCHHHHH----------HHHHHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHh-C--hHHHHHHHHHHHHHHHHHHHhcc----------ccHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhC
Confidence 9888 5 78999999999999986543221 1112334444332 2111123489999999999998654
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHhhc----cC--CccchhhHHHHHHhh---hcc--cccc---------ccCCCch
Q 035871 925 KYTSSSHPASLGDSRWLERIVQALVSCVT----TG--NVKVQWNVCRALSNL---FLN--ETIN---------LEDMDWA 984 (1127)
Q Consensus 925 ~~~~~~~~~~~g~~~~~E~~i~aLlk~l~----~~--n~KVRWNAc~ALGnl---~~n--~~i~---------~~~~~wa 984 (1127)
+.+. .....+.+++.+++.+. .. +..-+-.+..+|+.+ ++. +.+. ..-.+..
T Consensus 618 ~~~~--------~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 689 (971)
T 2x1g_F 618 RPEE--------IPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM 689 (971)
T ss_dssp CTTH--------HHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred CHHH--------HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH
Confidence 4211 11234454444444332 22 111223334444433 321 0000 0001234
Q ss_pred hHHHHHHHHHHhcC-CChHHHHHHHHHhcCCC--cccccCCchHHHHHHHHHHHH
Q 035871 985 PSVFSILLLLLRDS-SNFKIRIQAAAALAVPS--SVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 985 ~~v~~~Ll~ll~~~-~NFKVRi~AA~AL~~p~--~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
..+++.+..++.+. .+..|.-.|..+++... -..+++.+.+.++..++..++
T Consensus 690 ~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~ 744 (971)
T 2x1g_F 690 QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQ 744 (971)
T ss_dssp HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHh
Confidence 56778888887654 35688888888876311 112345556666666654443
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.2e-05 Score=86.79 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=141.3
Q ss_pred HHHccCChhHHHHHHHHHhc-cchhHHhhcc--hhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccc-cc-h
Q 035871 761 LILQHISSMVRTAAVTCFAG-ITSSVFFSLL--KETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVS-QS-A 834 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~-Igs~~f~~Lp--~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~-~d-~ 834 (1127)
..++..+..-|.+|.++|+. +.... ..+. ...-..++..|. ..+ +|.|+.||.+|+++||.++ ..++ .. .
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~-~~l~~D~n~~v~~~A~~al~~la--~~l~~~~f~ 98 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYG-HIIQKDANIQAVALAAQSVELIC--DKLKTPGFS 98 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHH--HHHCTTTSC
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHH--Hhccccccc
Confidence 34577788899999999999 75332 1222 222123344443 555 8999999999999999997 2333 22 2
Q ss_pred -HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhhh
Q 035871 835 -EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKSN 912 (1127)
Q Consensus 835 -~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRsn 912 (1127)
.|...+++.++..+.|+...||-.|.-||-+++..+-... .....+.++..|++. .+ .+..||..
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~---------~~~~l~~ll~~l~~~----l~~k~~~vk~~ 165 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA---------SSGRNEDMLKDILEH----MKHKTPQIRME 165 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC---------TTCTTHHHHHHHHHH----TTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc---------cCCcHHHHHHHHHHH----HcCCChHHHHH
Confidence 5788899999999999999999999999999988642100 000123455555543 33 35689999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHH-HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWL-ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSIL 991 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~-E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~L 991 (1127)
+...|+.++......+ . .-.... ..+++.|.+++.+.+..||=-|.-+||.+.+- + + ...+...
T Consensus 166 al~~l~~~~~~~~~~~----~--~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~--v--G-----~~~~~p~ 230 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGY----S--TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI--F--G-----MNTFVKT 230 (249)
T ss_dssp HHHHHHHHHHHCCSCS----H--HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--H--C-----SGGGHHH
T ss_pred HHHHHHHHHHHcCCcc----h--hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--h--C-----HHHHHHH
Confidence 9999999975433210 0 001235 67899999999999999999999999986531 0 0 1134455
Q ss_pred HHHHhcCCChHHH
Q 035871 992 LLLLRDSSNFKIR 1004 (1127)
Q Consensus 992 l~ll~~~~NFKVR 1004 (1127)
+.-|-+.++=|||
T Consensus 231 l~~Ld~~k~~ki~ 243 (249)
T 2qk1_A 231 LEHLDNLKRKKIE 243 (249)
T ss_dssp HHHSCHHHHHHHH
T ss_pred HHHHhHHHHHHHH
Confidence 5555444444444
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.1e-05 Score=84.93 Aligned_cols=192 Identities=11% Similarity=0.150 Sum_probs=137.3
Q ss_pred ccCCCHhHHHHHHHHHhh-hh-ccccccc-chHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhh-hcccccCCC
Q 035871 806 LHDDVASVRSAACRAIGV-IS-CFPQVSQ-SAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIR-HCIDDFAFK 880 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGv-lv-~~p~L~~-d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~-~~~~~~~~~ 880 (1127)
+.+.++.-|-+|..+|+. ++ -.|.+.. +..| ..+++.|...+ .|++..||..|+-+||.|+..+. ..
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~------- 96 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG------- 96 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT-------
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc-------
Confidence 478899999999999999 75 4455542 2222 46688888888 79999999999999999998774 32
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
+.......++-..+...+|+. .||..|..||-.+...+.+... . + ..+.+++.|+..+++++.+|
T Consensus 97 ------f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~-~----~---~l~~ll~~l~~~l~~k~~~v 162 (249)
T 2qk1_A 97 ------FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS-S----G---RNEDMLKDILEHMKHKTPQI 162 (249)
T ss_dssp ------SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT-T----C---TTHHHHHHHHHHTTCSSHHH
T ss_pred ------ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc-C----C---cHHHHHHHHHHHHcCCChHH
Confidence 221123334444555677765 5999999999888766543110 0 0 14678889999999999999
Q ss_pred hhhHHHHHHhhhcccccc-ccCCCch-hHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC
Q 035871 960 QWNVCRALSNLFLNETIN-LEDMDWA-PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK 1022 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~i~-~~~~~wa-~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~ 1022 (1127)
|-.++..|+.+..+..-. ..-.+.. +.+++.|+.++ ++.+-.||..|..+|+... ...|+
T Consensus 163 k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~--~~vG~ 224 (249)
T 2qk1_A 163 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILI--KIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHH--HHHCS
T ss_pred HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH--HHhCH
Confidence 999999999998653210 0001234 67999999999 5688999999999998432 24555
No 75
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00047 Score=85.38 Aligned_cols=234 Identities=15% Similarity=0.119 Sum_probs=140.6
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHh---HHHHHHHHHhhhhcc--
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVAS---VRSAACRAIGVISCF-- 827 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~---VRaAA~RALGvlv~~-- 827 (1127)
.|...+..+++.+|..|+.+|.+|... .+.|.. .+..|+ ..+.+.... +|..|++||..+...
T Consensus 461 ~Lv~Ll~S~s~~~re~A~~aL~nLS~d------~~~R~~lvqqGal~~LL-~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 461 FLKREMHNLSPNCKQQVVRIIYNITRS------KNFIPQLAQQGAVKIIL-EYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHHHHTS------GGGHHHHHHTTHHHHHH-HHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCC------HHHHHHHHHCCCHHHHH-HHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 344666788899999999999998533 233333 333343 555554333 899999999998521
Q ss_pred ccc---ccchHHHHHHHHHHHHhcC-CCCcc-------------hhchHHHHHHhhhhhhhhcccccCCCCCCccccc-H
Q 035871 828 PQV---SQSAEIIDKFIHAVEINTH-DPLVS-------------VRITASWALANICDSIRHCIDDFAFKPSIDSNAN-S 889 (1127)
Q Consensus 828 p~L---~~d~~fv~~ai~aLl~~l~-D~~~~-------------VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is-~ 889 (1127)
|.+ +.+. ..+++.|...+. ++... -+..|+.||.||+..=....++. ....+. .
T Consensus 534 p~~~f~~~~~---~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~-----r~~Ii~~~ 605 (778)
T 3opb_A 534 PGLIFKKYSA---LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV-----CKHIVSTK 605 (778)
T ss_dssp HHHHSSSSCS---TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH-----HHHHHHSH
T ss_pred HHHHcCCCcc---ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH-----HHHHHHhc
Confidence 111 1111 268889998887 23321 16789999999996310000000 000111 1
Q ss_pred HHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHh
Q 035871 890 HLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN 969 (1127)
Q Consensus 890 ~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGn 969 (1127)
..+..|.+. + ..+++.||..|+.++.||...-. ......+........+-++.|++.+..++.++|-.|+.||+|
T Consensus 606 ga~~~L~~L-L--~s~n~~VrrAA~elI~NL~~~~e--~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn 680 (778)
T 3opb_A 606 VYWSTIENL-M--LDENVPLQRSTLELISNMMSHPL--TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680 (778)
T ss_dssp HHHHHHHHG-G--GCSSHHHHHHHHHHHHHHHTSGG--GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-H--hCCCHHHHHHHHHHHHHHhCCcH--HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 233333332 1 35777899999999999974211 100001111111122348889999999999999999999999
Q ss_pred hh-ccccccccCCCchhHHHHHHHHHHhcC-CChHHHHHHHHHhc
Q 035871 970 LF-LNETINLEDMDWAPSVFSILLLLLRDS-SNFKIRIQAAAALA 1012 (1127)
Q Consensus 970 l~-~n~~i~~~~~~wa~~v~~~Ll~ll~~~-~NFKVRi~AA~AL~ 1012 (1127)
+- .++.+... .--....++.|+.++.+- ++-.+|.+++.+|.
T Consensus 681 Lts~~~~ia~~-ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 681 IATTIPLIAKE-LLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp HHHHCHHHHHH-HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCCChHHHHH-HHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 84 34433100 001135677888888662 78999999999995
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.73 E-value=0.00028 Score=80.40 Aligned_cols=201 Identities=16% Similarity=0.201 Sum_probs=131.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+..+++..+..+|...-=.+-.+... |++ -..+++++. .=++|.|+.||+.|.|+||.+ .++++++
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~-----~~e-~iLv~Nsl~-kDl~~~N~~iR~lALRtL~~I-------~~~~m~~ 138 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI-----AED-VIIVTSSLT-KDMTGKEDSYRGPAVRALCQI-------TDSTMLQ 138 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT-----SSC-GGGGHHHHH-HHHHSSCHHHHHHHHHHHHHH-------CCTTTHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC-----HHH-HHHHHHHHH-hhcCCCcHhHHHHHHHHHhcC-------CCHHHHH
Confidence 34678888999999887666654332 332 235555554 335789999999999999999 3455678
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRAL 917 (1127)
.....+...+.|+++.||-+|+.+..++... .++++...++....+..|.+ -|..||+.+|
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~------------------~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL 200 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC------------------SFDVVKRWVNEAQEAASSDNIMVQYHALGLL 200 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT------------------CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc------------------CHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 8888888899999999999999998877642 23445555555555566655 6889999988
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH---hhhccccccccCCCchhHHHHHHHHH
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS---NLFLNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG---nl~~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
-.+.+ .+ ..++..|+..+..+..+-.|.-|.=|- .++..+ ++.-+..+++.|...
T Consensus 201 ~ei~~-------------~d----~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d-----~~~~~~~~~~~l~~~ 258 (355)
T 3tjz_B 201 YHVRK-------------ND----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE-----DGSRDSPLFDFIESC 258 (355)
T ss_dssp HHHHT-------------TC----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CC
T ss_pred HHHHh-------------hc----hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc-----chhhHHHHHHHHHHH
Confidence 88841 12 225666666666666777898888554 222221 123456778888888
Q ss_pred HhcCCChHHHHHHHHHhcCC
Q 035871 995 LRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~~p 1014 (1127)
++ ++|--|-..|+.++...
T Consensus 259 L~-~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 259 LR-NKHEMVVYEAASAIVNL 277 (355)
T ss_dssp CC-CSSHHHHHHHHHHHTC-
T ss_pred Hc-CCChHHHHHHHHHHHhc
Confidence 85 57888999999999743
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.72 E-value=0.00069 Score=82.31 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=76.1
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc--cCCCHhHHHHHHHHHhhhh-cccccccchH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL--HDDVASVRSAACRAIGVIS-CFPQVSQSAE 835 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~--~De~~~VRaAA~RALGvlv-~~p~L~~d~~ 835 (1127)
+-.-++|+++.+|+.|++++++|+...+. +.++.. +..++ .|.+|.||-.|+-++..+. .+|.+-.+.
T Consensus 116 l~kDl~~~n~~ir~lALr~L~~i~~~e~~-------~~l~~~-v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~- 186 (621)
T 2vgl_A 116 IKNDLASRNPTFMGLALHCIANVGSREMA-------EAFAGE-IPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMG- 186 (621)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCCHHHH-------HHHTTH-HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCC-
T ss_pred HHHhcCCCCHHHHHHHHHHhhccCCHHHH-------HHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCch-
Confidence 33567899999999999999999865422 233332 34666 8999999999999998876 556655432
Q ss_pred HHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 836 IIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 836 fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.+++.+...+.|+++.|+..|..+|..++.
T Consensus 187 ---~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 187 ---DWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp ---SCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 466777777899999999999999999986
No 78
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.61 E-value=6.9e-05 Score=80.73 Aligned_cols=187 Identities=17% Similarity=0.035 Sum_probs=113.6
Q ss_pred hhccCCCH--hHHHHHHHHHhhhhc-ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 804 SALHDDVA--SVRSAACRAIGVISC-FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 804 ~~~~De~~--~VRaAA~RALGvlv~-~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
..+..+++ .|+..|+++|..++. -+..+. ..+-...++.|...|..++..||..|+|||.||+..-..+...
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~-~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~---- 89 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQKSEARK-RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE---- 89 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHH-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH----
Confidence 34455555 899999999998863 111111 1112346889999999999999999999999998420011000
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc---c---
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT---T--- 954 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~---~--- 954 (1127)
......+..|++. |+. ..+..++.+|+.||.||...-.. -....+.+|..|++.+. .
T Consensus 90 -----I~~~GaI~~Lv~l-L~~-~~~~~~~e~a~~aL~nLS~~~~~----------k~~i~~~~i~~Lv~ll~~p~sG~~ 152 (233)
T 3tt9_A 90 -----VAELNGVPRLLQV-LKQ-TRDLETKKQITGLLWNLSSNDKL----------KNLMITEALLTLTENIIIPFSGWP 152 (233)
T ss_dssp -----HHHTTHHHHHHHH-HHH-CCCHHHHHHHHHHHHHHHTSGGG----------HHHHHHHHHHHHCCCCCHHHHCCC
T ss_pred -----HHHcCCHHHHHHH-Hcc-CCCHHHHHHHHHHHHHHHcChhh----------HHHHHhccHHHHHHHHhccccCCc
Confidence 0001123334332 111 23458999999999999621111 12345667888887652 1
Q ss_pred ----------CCccchhhHHHHHHhhhc-cccccccCCCchhHHHHHHHHHHhcC-----CChHHHHHHHHHhcC
Q 035871 955 ----------GNVKVQWNVCRALSNLFL-NETINLEDMDWAPSVFSILLLLLRDS-----SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 955 ----------~n~KVRWNAc~ALGnl~~-n~~i~~~~~~wa~~v~~~Ll~ll~~~-----~NFKVRi~AA~AL~~ 1013 (1127)
.+..|+-||+-+|.|+-. ++.... .+.-.+-+++.|..+++.+ .+-|.+-+|..+|..
T Consensus 153 ~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~-~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~n 226 (233)
T 3tt9_A 153 EGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRK-AMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226 (233)
T ss_dssp GGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHH-HHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Confidence 245899999999999964 322210 0001122678888887653 245888899988864
No 79
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.55 E-value=0.036 Score=71.21 Aligned_cols=149 Identities=9% Similarity=0.044 Sum_probs=104.5
Q ss_pred CCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcC-----CCCcchhchHHHHHHhhhhhhhhcccccCCCCCC
Q 035871 809 DVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH-----DPLVSVRITASWALANICDSIRHCIDDFAFKPSI 883 (1127)
Q Consensus 809 e~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~-----D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~ 883 (1127)
.++..|-||+.|+|.+.--+.-.....|+..+++.|+..++ |+..-||..++|.||.+++-+..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---------- 534 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---------- 534 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC----------
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc----------
Confidence 67999999999999986433222245677888888887765 566778888999999999977532
Q ss_pred cccccHHHHHHHHHHHHhhcc-CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhh
Q 035871 884 DSNANSHLMASLTESALNLTK-DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWN 962 (1127)
Q Consensus 884 ~~~is~~lL~~L~e~aL~a~~-D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWN 962 (1127)
++.|..+++..+.... ++++|..+|+.|+-+|.+-....-...+ ..+.....+.+++.+.++...-..+-+--
T Consensus 535 -----~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~-~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 535 -----WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ-PRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp -----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCC-TTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 2346666666666665 5568999999999999865442110000 00112356777778877777666777778
Q ss_pred HHHHHHhhhcc
Q 035871 963 VCRALSNLFLN 973 (1127)
Q Consensus 963 Ac~ALGnl~~n 973 (1127)
+..|+|.+.++
T Consensus 609 lyeai~~vi~~ 619 (1023)
T 4hat_C 609 FYKACGIIISE 619 (1023)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88889988765
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.43 E-value=0.00045 Score=78.79 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=120.4
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.=++|+++.+|+.|.++|++|....+ -+.+.. .+..++.|.+|.||.+|+-+...+. ..+++.++.+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~m-------~~~l~~-~lk~~L~d~~pyVRk~A~l~~~kL~-----~~~pe~v~~~ 177 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDSTM-------LQAIER-YMKQAIVDKVPSVSSSALVSSLHLL-----KCSFDVVKRW 177 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTTT-------HHHHHH-HHHHHHTCSSHHHHHHHHHHHHHHT-----TTCHHHHHTT
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHHH-------HHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHh-----ccCHHHHHHH
Confidence 45689999999999999999976542 123333 3557789999999999999887763 3456667889
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNL 920 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnL 920 (1127)
++.+...+.|++..|-..|-=+|-.|+.. .+..+.+|+...-+..--++-....-+|.++.+
T Consensus 178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~------------------d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~ 239 (355)
T 3tjz_B 178 VNEAQEAASSDNIMVQYHALGLLYHVRKN------------------DRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQ 239 (355)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhh------------------chHHHHHHHHHHhcCCCcChHHHHHHHHHHHHh
Confidence 99999999999999998777777776632 122355555532110000122333345555544
Q ss_pred hhccccCCCCCCCCCCC-hhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 921 SRFVKYTSSSHPASLGD-SRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 921 l~~l~~~~~~~~~~~g~-~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
++ ++ +...+.+++.|..++++.+.-|-..|+.++=.+-..+.- -...+++.|-..+.+.+
T Consensus 240 ~~-------------~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~------~~~~a~~~L~~fLss~d 300 (355)
T 3tjz_B 240 LE-------------DEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK------ELAPAVSVLQLFCSSPK 300 (355)
T ss_dssp ------------------------------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSS
T ss_pred cc-------------ccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH------HHHHHHHHHHHHHcCCC
Confidence 31 12 233577888898999998888999999999776442211 11223455555665433
Q ss_pred ChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHh
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
--||.-|-.-|.... ..+|.++...-.-+|++
T Consensus 301 -~niryvaLr~L~~l~------~~~P~~v~~~n~~ie~l 332 (355)
T 3tjz_B 301 -AALRYAAVRTLNKVA------MKHPSAVTACNLDLENL 332 (355)
T ss_dssp -SSSHHHHHHCC---------------------------
T ss_pred -chHHHHHHHHHHHHH------HHCcHHHHHHHHHHHHH
Confidence 358998888886332 33445554443444443
No 81
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.43 E-value=0.11 Score=66.54 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=132.1
Q ss_pred hhHHHHHHHHHhccchhHH----------hhcchhHHHHHHHHHHhhhc-----cCCCHhHHHHHHHHHhhhhccccccc
Q 035871 768 SMVRTAAVTCFAGITSSVF----------FSLLKETQEFIISSLIDSAL-----HDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f----------~~Lp~~~q~~~i~~Lll~~~-----~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
-..+.+|+-||+.+|...- ..+|. ++. ++..++ .+..|.||..++.++|.|..|-. .
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~-----l~~-ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~--~ 528 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTV-----LSQ-ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD--Y 528 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCH-----HHH-HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG--T
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHH-----HHH-HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh--c
Confidence 3578999999888876431 12332 333 233333 38999999999999999975443 2
Q ss_pred chHHHHHHHHHHHH--hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhh----ccCC
Q 035871 833 SAEIIDKFIHAVEI--NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNL----TKDG 906 (1127)
Q Consensus 833 d~~fv~~ai~aLl~--~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a----~~D~ 906 (1127)
.+.|+..+++.++. .+.|++..||..|+.||.++|....... .+ ..+.++..+-. ++.. .++.
T Consensus 529 ~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L-----~~-----~~~~il~~l~~-lL~~~~~~~~~~ 597 (980)
T 3ibv_A 529 ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV-----VN-----YTESSLAMLGD-LLNISVSPVTDM 597 (980)
T ss_dssp CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC-----SS-----SHHHHHHHTTG-GGCCCCCCCCC-
T ss_pred CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh-----hh-----HHHHHHHHHHH-hhcCcCCCCCcc
Confidence 45678899999998 8999999999999999999999876433 22 11233333321 2211 1111
Q ss_pred c---------------hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHH----Hhhcc---C-Cccchh-h
Q 035871 907 D---------------KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALV----SCVTT---G-NVKVQW-N 962 (1127)
Q Consensus 907 D---------------KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLl----k~l~~---~-n~KVRW-N 962 (1127)
| +=+-.-..|+|.|........ ......++.++.-|+ +++.. + +.+++- -
T Consensus 598 ~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~------e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~ 671 (980)
T 3ibv_A 598 DAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTP------EEQALYCDSLINALIGKANAALSSDLSALENIISVYC 671 (980)
T ss_dssp -CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCH------HHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHH
T ss_pred cccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence 1 124558899999986654211 011123444444433 33321 1 222211 1
Q ss_pred HHHHHHhhhc---cccccccCCCchh---HHHHHHHHHHhc-CCChHHHHHHHHHhc--CCCcccccCC----chHHHHH
Q 035871 963 VCRALSNLFL---NETINLEDMDWAP---SVFSILLLLLRD-SSNFKIRIQAAAALA--VPSSVSDYGK----SFSDVVQ 1029 (1127)
Q Consensus 963 Ac~ALGnl~~---n~~i~~~~~~wa~---~v~~~Ll~ll~~-~~NFKVRi~AA~AL~--~p~~R~~yG~----~~~~V~~ 1029 (1127)
...|+|.+.+ +. .....+|.. ++.+.++.++.. .++..||-.+..++. ++ .+|. +.+.++.
T Consensus 672 ~i~al~~lakgf~~~--~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~----~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 672 SLMAIGNFAKGFPAR--GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN----VVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHHHHHHHTSCSC--C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT----TTHHHHTTTHHHHHH
T ss_pred HHHHHHHHhccCCcc--cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----HccHhHHHHHHHHHH
Confidence 2445565543 21 111123443 344455555543 356779999998884 33 3554 4555555
Q ss_pred HHH
Q 035871 1030 GLE 1032 (1127)
Q Consensus 1030 ~L~ 1032 (1127)
.++
T Consensus 746 ~ll 748 (980)
T 3ibv_A 746 ILL 748 (980)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 82
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.31 E-value=0.0012 Score=71.01 Aligned_cols=187 Identities=16% Similarity=0.026 Sum_probs=111.5
Q ss_pred HHHHHccCCh--hHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 759 MPLILQHISS--MVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 759 Lp~~l~d~~~--~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
|-..|+.+++ .++..|+.+|.++.... .+.+. ..|..|+ .+++.+++.|+..|++||++++.-..-.
T Consensus 13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-----~~~r~~I~~~G~Ip~LV-~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 13 AVSMLEADHMLPSRISAAATFIQHECFQK-----SEARKRVNQLRGILKLL-QLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHHHHC-----HHHHHHHHHTTHHHHHH-HGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHcCC-----cHHHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3345676766 89999999998864221 11122 2455454 7778899999999999999997421111
Q ss_pred cchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh---hcc---
Q 035871 832 QSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN---LTK--- 904 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~---a~~--- 904 (1127)
.....-..+++.|+..+. .++..||..|+.+|-||+..-. +. ..+-...+..|++-.+. -..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k----------~~i~~~~i~~Lv~ll~~p~sG~~~~~ 155 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LK----------NLMITEALLTLTENIIIPFSGWPEGD 155 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GH----------HHHHHHHHHHHCCCCCHHHHCCCGGG
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hH----------HHHHhccHHHHHHHHhccccCCcccc
Confidence 111112346788888887 4688999999988888874210 00 01222233344331110 001
Q ss_pred -------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChh-H--HHHHHHHHHHhhcc------CCccchhhHHHHHH
Q 035871 905 -------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSR-W--LERIVQALVSCVTT------GNVKVQWNVCRALS 968 (1127)
Q Consensus 905 -------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~-~--~E~~i~aLlk~l~~------~n~KVRWNAc~ALG 968 (1127)
.+..|+.||+-+|.||...- . +.+. . .+..|+.|+..++. .+-|.+=||.++|-
T Consensus 156 ~~~~~~~~~~~v~~na~~~L~nLss~~-~---------~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 156 YPKANGLLDFDIFYNVTGCLRNMSSAG-A---------DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225 (233)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHTTSC-H---------HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhcCC-H---------HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 12379999999999995210 0 0000 1 12356666665543 35789999999999
Q ss_pred hhhc
Q 035871 969 NLFL 972 (1127)
Q Consensus 969 nl~~ 972 (1127)
|+-.
T Consensus 226 nLs~ 229 (233)
T 3tt9_A 226 NLSY 229 (233)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 9753
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.30 E-value=0.0013 Score=70.76 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
++.+..|...++|++..|+.+|-.+|+++-..+- ...+...+..++...++.++++| ||.-+|.|+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~-------------~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~ 98 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRAD-------------SDLRMMVLERHLDVFINALSQENEKVTIKALRA 98 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC-------------HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-------------ccccHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 4677788888999999999999999999987531 12334456677777777777655 999999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||.|+.-.+.. +.-..+++++|.+.++.+|.=.+--|+-.||.+ ..+ .-...|.+.|..++
T Consensus 99 L~~LLe~vpL~----------~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~------~~~~~V~~~l~sLl- 159 (265)
T 3b2a_A 99 LGYLVKDVPMG----------SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPL------EDSKLVRTYINELV- 159 (265)
T ss_dssp HHHHHTTCCBC----------HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBS------CCCHHHHHHHHHHH-
T ss_pred HHHHHcCCCCC----------HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--Ccc------cchHHHHHHHHHHH-
Confidence 99998444332 234788999999999989988899999999998 322 22578999999999
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
.++|-.|+.-|-.||-..++|..=-+...+|.+.+-.-|.
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~ 199 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQ 199 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHT
T ss_pred hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHc
Confidence 7899999999989996555544322334445554444443
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.011 Score=61.75 Aligned_cols=200 Identities=15% Similarity=0.178 Sum_probs=129.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
+.+.|+-+.|+.-|.+.+-.+. -||.+ .+.++..|+-.+ .+.....-.--|.|+|-+..
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~~el------~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~------------- 99 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTREDL------YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK------------- 99 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCGGG------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-------------
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHhHHH------HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-------------
Confidence 6678888999999999988876 55555 345666665543 45555555666778887663
Q ss_pred CCcccccHHHHHHHHHHHHhh-ccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccch
Q 035871 882 SIDSNANSHLMASLTESALNL-TKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQ 960 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a-~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVR 960 (1127)
+.|+.+.+++.....- .-..+|+|-|-..|||.+.+. ++.++-.++.-+...++++|--=|
T Consensus 100 -----i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-------------nP~l~~~v~rdi~smltskd~~Dk 161 (253)
T 2db0_A 100 -----EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-------------NPMLMASIVRDFMSMLSSKNREDK 161 (253)
T ss_dssp -----HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-------------CHHHHHHHHHHHHHHTSCSSHHHH
T ss_pred -----hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-------------ChHHHHHHHHHHHHHhcCCChHHH
Confidence 3345555555432211 123568999999999988632 344566777788888887775555
Q ss_pred hhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhcc
Q 035871 961 WNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGA 1040 (1127)
Q Consensus 961 WNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s 1040 (1127)
--|-.=+|.++-|. ..+...-.+.|..+| +++|--||.+|..+|+ +...--+.+-..+..-|+..
T Consensus 162 l~aLnFi~alGen~------~~yv~PfLprL~aLL-~D~deiVRaSaVEtL~------~lA~~npklRkii~~kl~e~-- 226 (253)
T 2db0_A 162 LTALNFIEAMGENS------FKYVNPFLPRIINLL-HDGDEIVRASAVEALV------HLATLNDKLRKVVIKRLEEL-- 226 (253)
T ss_dssp HHHHHHHHTCCTTT------HHHHGGGHHHHHGGG-GCSSHHHHHHHHHHHH------HHHTSCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccC------ccccCcchHHHHHHH-cCcchhhhHHHHHHHH------HHHHcCHHHHHHHHHHHHHh--
Confidence 55555556666552 122333457778888 7799999999999998 44444455666666777776
Q ss_pred CCCCCCccchhhHHH
Q 035871 1041 DHLSAPSSFKYRVAL 1055 (1127)
Q Consensus 1041 ~~~~df~Eykyrd~L 1055 (1127)
++.++-..++-+..|
T Consensus 227 ~D~S~lv~~~V~egL 241 (253)
T 2db0_A 227 NDTSSLVNKTVKEGI 241 (253)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH
Confidence 344544555555444
No 85
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.81 E-value=0.0013 Score=71.27 Aligned_cols=24 Identities=29% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhh
Q 035871 801 LIDSALHDDVASVRSAACRAIGVI 824 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvl 824 (1127)
++..++.|+++.||.+|++.|+..
T Consensus 54 l~~~ll~d~~~~VR~~AA~~l~~~ 77 (244)
T 1lrv_A 54 LAVQYLADPFWERRAIAVRYSPVE 77 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSCGG
T ss_pred HHHHHhcCCCHHHHHHHHHhCCHH
Confidence 344667999999999999988644
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.077 Score=55.52 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=105.7
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
..|.|.-=+||..|.+-+..|..+. .+.++-.+.-|+.-+-++|.-..-.+=+|++|+++ +..+..+..+
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~-----~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la-----~i~Pe~v~~v 108 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTR-----EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMA-----KEKPELVKSM 108 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTC-----GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH-----HHCHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHH-----HhCHHHHHhh
Confidence 4555655789999999999875443 23344444444433357888888888899999996 3456678899
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhhhHHHHHhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRGLGN 919 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRsnAvRALGn 919 (1127)
++.|..+..=-++..|++-+++|+.|.-+ .|+++..+.+-......++|. =|.-|.-=+|-
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIara------------------nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKA------------------NPMLMASIVRDFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHH------------------CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHh------------------ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999988777889999999999999854 123333333332333334332 22222222222
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
++ . ......--..+.|...+.|+|--||-.|..+||++-
T Consensus 171 lG----e---------n~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA 209 (253)
T 2db0_A 171 MG----E---------NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209 (253)
T ss_dssp CC----T---------TTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred Hh----c---------cCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHH
Confidence 21 0 012233334556666666777777777777776664
No 87
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.36 E-value=0.1 Score=66.99 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=131.1
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhcc-----CCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALH-----DDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~-----De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
+-..|.++|=|+|.|....-+.-.+..-..++.. ++++++ |..+.||..++++||.|.-|- ..+..|+..++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~-Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl--~~~~~~L~~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD-LLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL--KAHWNFLRTVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH-HHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH--HHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-HHHhhhccccCcchHHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 4678999999999975432100001112235553 446665 566778999999999986443 34688899999
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 842 HAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
+.|+..+.|+++.|...|+|||.+||+......... ++ . +.++ .+..+++.......+.+ +-+..+..|+|.+
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~--~~--~-e~~p-~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ--QP--R-ESEP-FIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSC--CT--T-CSSC-HHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcc--CC--C-CCch-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999754432110 10 0 1111 13333332222233333 5667899999999
Q ss_pred hhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCch-hHHHHHHHHHHhcCC
Q 035871 921 SRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA-PSVFSILLLLLRDSS 999 (1127)
Q Consensus 921 l~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa-~~v~~~Ll~ll~~~~ 999 (1127)
.+..+.+. .....++.|+.-+ ..+||....- .-.++.+ |. ......|..+++
T Consensus 617 i~~~~~~~-----------~~~~~l~~L~~~~-----~~~~~~l~~~--~~~~~~~------~~d~~~~~~l~~il~--- 669 (1023)
T 4hat_C 617 ISEERSVA-----------ERNRLLSDLMQLP-----NMAWDTIVEQ--STANPTL------LLDSETVKIIANIIK--- 669 (1023)
T ss_dssp HTTCCSHH-----------HHHHHHHHHTHHH-----HHHHHHHHHH--HHHCTTG------GGCHHHHHHHHHHHH---
T ss_pred HHhCCCHh-----------hHHHHHHHHHHhH-----HHHHHHHHHH--HhcCchh------hcCHHHHHHHHHHHH---
Confidence 85554321 1334444444332 3456554431 1223222 21 123445555553
Q ss_pred ChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+=...|.+||. .|..+...+|..++...+.
T Consensus 670 ---~~~~v~~~lg~-----~f~~~~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 670 ---TNVAVCTSMGA-----DFYPQLGHIYYNMLQLYRA 699 (1023)
T ss_dssp ---HHHHHHHHHGG-----GGHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHH
Confidence 33345666763 3555555666666655544
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.36 E-value=0.036 Score=59.90 Aligned_cols=199 Identities=15% Similarity=0.035 Sum_probs=133.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|-.++.+.++.++..|.-+|..+-...=..+....-+.+...++ .+++++|--|--.|.|+||.+.---.+.. .+ .
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI-~llk~~dEkval~A~r~L~~LLe~vpL~~-~~-y 113 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFI-NALSQENEKVTIKALRALGYLVKDVPMGS-KT-F 113 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTCCSTTHHHHHHHHHHHHHHHTTCCBCH-HH-H
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHcCCCCCH-HH-H
Confidence 344577889999999999999987544211122233333444444 67799999999999999999974333332 23 4
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGL 917 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRAL 917 (1127)
.+.++++......++.-.|.-||-.||.+- . . ...+.++..+.+ .+ ...+-.|++-|.|||
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklk-v---------~------~~~~~V~~~l~s-Ll--~Skd~~vK~agl~~L 174 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQ-P---------L------EDSKLVRTYINE-LV--VSPDLYTKVAGFCLF 174 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCC-B---------S------CCCHHHHHHHHH-HH--TCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCC-c---------c------cchHHHHHHHHH-HH--hCCChhHHHHHHHHH
Confidence 688999999999999999999999999881 1 0 122333333322 22 345558999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
-|++..-.+. ...+.+++.+-..++..|+-++=-|-.+|-+++.-+- .+.+.+.+..+++-
T Consensus 175 ~eia~~S~D~-----------~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi--------~~~~~~~~~~~~~~ 235 (265)
T 3b2a_A 175 LNMLNSSADS-----------GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPL--------LENVKIELLKISRI 235 (265)
T ss_dssp HHHGGGCSSC-----------CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC--------CSCCHHHHHHHHHH
T ss_pred HHhhcccCCH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc--------cHhHHHHHHHHHHH
Confidence 9997554433 3345555566666777788888888888888876531 23455666665543
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.96 E-value=0.014 Score=71.47 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=48.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHH-HhcCCCCcchhchHHHHHHhhhhh
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVE-INTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl-~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
..++..++.+|..||.||++++.-|+.+. ..-.++.+..++ ..+.|++..||..|+|||+||+..
T Consensus 41 ~~L~S~~~~~r~~A~~al~~l~~~~~~~~-l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 41 KDLKSPDAKSRTTAAGAIANIVQDAKCRK-LLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHSSSCCSHHHHHHHHHHHHTTSHHHHH-HHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHcCcHHHH-HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44688999999999999999974333222 111245565554 458999999999999999999854
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.082 Score=57.03 Aligned_cols=184 Identities=10% Similarity=0.101 Sum_probs=115.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHH-H-----H--HHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQ-E-----F--IISSLIDSALHDDVASVRSAACRAIGVISCFPQV 830 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q-~-----~--~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L 830 (1127)
|...+.+.+=-.|-.|.+.|..+ |...+.+.- + + ++ .++-..+.|.|..|...|+.+|..++.+-..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~----~~~~~~~~~~~~~~~~~~~~~-~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQL----FRNSVGDISRDDNIQIYWRDP-TLFAQYITDSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH----HHTC----------CCTTSCT-HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhcccCcHHHHHHHHHHHHHH----HhhCcccccchhHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 33455666666788888877653 211111100 0 0 11 1334567899999999999999988743221
Q ss_pred c-----cchHHHHHHHHHHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc
Q 035871 831 S-----QSAEIIDKFIHAVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK 904 (1127)
Q Consensus 831 ~-----~d~~fv~~ai~aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~ 904 (1127)
. ....++..+++.|+.. +.|+...+|..|.-+|-.++... ..... +.+..+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~---------------~~~~~----~~e~l~~~l~ 149 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD---------------TSITQ----SVELVIPFFE 149 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS---------------SSSHH----HHHHHGGGGG
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc---------------CcHHH----HHHHHHHHHh
Confidence 1 1233456677777765 89999999988776665444321 01112 2233333344
Q ss_pred -CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 905 -DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 905 -D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
-+.|||..++..|..+++-...... .....+..++..|.+++.+.|..||=.|...++.+++
T Consensus 150 ~Knpkv~~~~l~~l~~~l~~fg~~~~------~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 150 KKLPKLIAAAANCVYELMAAFGLTNV------NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTTTC------CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCcC------CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 5669999999999998865443322 1112356677788899999999999999999998875
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.066 Score=57.78 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=96.5
Q ss_pred HHHccCChhHHHHHHHHHhccch---hHH--hhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchH
Q 035871 761 LILQHISSMVRTAAVTCFAGITS---SVF--FSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAE 835 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs---~~f--~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~ 835 (1127)
..+.|++..|...|++|+..+-. ..+ ..........++..++..++.|..+.+|..|..+|-.++-....
T Consensus 62 k~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----- 136 (278)
T 4ffb_C 62 QYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----- 136 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----
Confidence 45679999999999999875311 000 00011112345555665667899999999999998766522111
Q ss_pred HHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc-HHHHHHHHHHHHhhccCCc-hhhhhH
Q 035871 836 IIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN-SHLMASLTESALNLTKDGD-KIKSNA 913 (1127)
Q Consensus 836 fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is-~~lL~~L~e~aL~a~~D~D-KVRsnA 913 (1127)
...+++.++..+.++++.||.-+.-.|.++-...... .++ ...+..+++.+.++.+|.| .||..|
T Consensus 137 -~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~------------~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA 203 (278)
T 4ffb_C 137 -ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT------------NVNVQTFLPELLKHVPQLAGHGDRNVRSQT 203 (278)
T ss_dssp -SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT------------TCCHHHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred -HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC------------cCCchhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 1355677888899999999988877777766543211 222 2345556666666678887 699999
Q ss_pred HHHHhhhhhccc
Q 035871 914 VRGLGNLSRFVK 925 (1127)
Q Consensus 914 vRALGnLl~~l~ 925 (1127)
...+|.+-+++-
T Consensus 204 ~~l~~~ly~~~G 215 (278)
T 4ffb_C 204 MNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHhC
Confidence 999999977665
No 92
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.60 E-value=0.051 Score=66.67 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC 826 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~ 826 (1127)
..|+.+++..|..||.||++|-... ..-..-.++-++..+|..++.|++..||.+|+.||++++.
T Consensus 41 ~~L~S~~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 41 KDLKSPDAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HHHSSSCCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4478889999999999999975322 0000111222333456677899999999999999999963
No 93
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.56 E-value=0.3 Score=62.96 Aligned_cols=242 Identities=15% Similarity=0.126 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC-HhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHH
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV-ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI 846 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~-~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~ 846 (1127)
+..|..-.|||+.+|...- -.++.. .+..++ .... |+.+|+.....+ .-+. ..++.+..
T Consensus 339 ~~~r~~~lDal~~aGT~~a-------~~~i~~-----~i~~~~l~~~e--a~~~l~~~~~~~--~Pt~----e~l~~~~~ 398 (1056)
T 1lsh_A 339 KDYRRWILDAVPAMATSEA-------LLFLKR-----TLASEQLTSAE--ATQIVASTLSNQ--QATR----ESLSYARE 398 (1056)
T ss_dssp HHHHHHHHHHHHHHCSHHH-------HHHHHH-----HHHTTCSCHHH--HHHHHHHHHHTC--CCCH----HHHHHHHH
T ss_pred HHHHHHHHHHhHhcCCHHH-------HHHHHH-----HHHcCCCCHHH--HHHHHHHhhccC--CCCH----HHHHHHHH
Confidence 5678889999999987541 122222 223222 2222 555555432211 1222 34444444
Q ss_pred hcCC----CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHHHhhhh
Q 035871 847 NTHD----PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRGLGNLS 921 (1127)
Q Consensus 847 ~l~D----~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl 921 (1127)
.+.+ ++..+|..|.-|+|+|......+... . . . ..-+.+...+.+ +...+ ..-+.-+.+||||++
T Consensus 399 l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~-c-~---~-~~v~~i~~~l~~----~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 399 LLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS-C-P---D-ELLQPLHDLLSQ----SSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS-C-C---G-GGTHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHT
T ss_pred HHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC-C-C---H-HHHHHHHHHHHH----HHhcCChHHHHHHHHHhhccC
Confidence 4433 45678889999999999876543210 0 0 1 111222233322 22322 456788999999996
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhcc-------CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-------GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~-------~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
.+ .+++.|.+++.. ....||--|..||.++-.+. -..+.+.|+.+
T Consensus 469 ---------------~p----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~---------p~~v~~il~~i 520 (1056)
T 1lsh_A 469 ---------------QP----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD---------PRKVQEIVLPI 520 (1056)
T ss_dssp ---------------CG----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---------HHHHHHHHHHH
T ss_pred ---------------Ch----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---------hHHHHHHHHHH
Confidence 21 256677777742 23568889999998876432 24578888888
Q ss_pred Hh-cCCChHHHHHHHHHhc--CCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHh
Q 035871 995 LR-DSSNFKIRIQAAAALA--VPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFKVLC 1071 (1127)
Q Consensus 995 l~-~~~NFKVRi~AA~AL~--~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~~~~ 1071 (1127)
.. ...+..|||-|...|. .| ...++..+...|+. +. -.|+++|....|+.+.
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm~t~P---------~~~~l~~ia~~l~~---E~-------------~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFFESKP---------SVALVSMVAVRLRR---EP-------------NLQVASFVYSQMRSLS 575 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHHHTCC---------CHHHHHHHHHHHTT---CS-------------CHHHHHHHHHHHHHHT
T ss_pred hcCCCCChHHHHHHHHHHHHHCc---------CHHHHHHHHHHHhh---Cc-------------hHHHHHHHHHHHHHHH
Confidence 85 4577899999999996 23 12466666666653 10 3678888888887776
Q ss_pred hcccccccccccccCCCCchhHHHHHHHHHHHHHHH
Q 035871 1072 SSLGESTTHLENENNSVGNQKKEMISKAIRSLIEVY 1107 (1127)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1107 (1127)
.+= ++..+.+..+.+..++++
T Consensus 576 ~s~---------------~P~~~~la~~~~~a~~~l 596 (1056)
T 1lsh_A 576 RSS---------------NPEFRDVAAACSVAIKML 596 (1056)
T ss_dssp TCC---------------SGGGHHHHHHHHHHHTTS
T ss_pred hcC---------------CcchHHHHHHHHHHHHHh
Confidence 531 223445555666665554
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.50 E-value=0.11 Score=66.49 Aligned_cols=148 Identities=10% Similarity=0.087 Sum_probs=95.8
Q ss_pred CCCHhHHHHHHHHHhhhhcccccccc--hHHHHHHHHHHHHhcC-----CCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 808 DDVASVRSAACRAIGVISCFPQVSQS--AEIIDKFIHAVEINTH-----DPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 808 De~~~VRaAA~RALGvlv~~p~L~~d--~~fv~~ai~aLl~~l~-----D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
..++-.|-+|+.++|.+. ..+... ..|+...++.++...+ |+.+.||.++.|.+|.+++-+..+
T Consensus 464 ~~~W~~~eaal~algsia--~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~------- 534 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSIS--GTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH------- 534 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-------
T ss_pred CCCHHHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-------
Confidence 467889999999999874 222222 3455666666655332 567778888999999999765431
Q ss_pred CCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 881 PSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
++.+..+++..+....| +.+|+..|+.|+.+|.+-....-.. .....-...++.+++.|...+..-+.+-
T Consensus 535 --------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~-~~~~~~~p~~~~il~~l~~~~~~~~~~~ 605 (1049)
T 3m1i_C 535 --------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI-QQPRESEPFIQTIIRDIQKTTADLQPQQ 605 (1049)
T ss_dssp --------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHS-CCTTCSSCHHHHHHHTHHHHHTTSCHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc-ccCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 23455566665655666 5689999999999998754321000 0000011246778887777776544555
Q ss_pred hhhHHHHHHhhhcc
Q 035871 960 QWNVCRALSNLFLN 973 (1127)
Q Consensus 960 RWNAc~ALGnl~~n 973 (1127)
+-....|+|.+...
T Consensus 606 ~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 606 VHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 66778888888754
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.40 E-value=0.12 Score=55.77 Aligned_cols=148 Identities=12% Similarity=0.191 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
..+.......|+...||.-|+.+||.+ ... .+.|..+-+- ...|.. .||-.++.++|
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------------------~~~L~~ir~~---va~D~~WrVre~lA~a~~ 129 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------------------KEILIFMRDE---VSKDNNWRVQEVLAKAFD 129 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------------------HHHHHHHHHT---GGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------------------HHHHHHHHHH---hCCCCCccHHHHHHHHHH
Confidence 333444446888899999999999977 210 1223333210 234444 89999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
.++....+ |.+++.+..-+++.|+-||.=|+..+---...+.+ .-.+...-.++..+.++
T Consensus 130 ~~~~~~~p---------------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~-----k~dp~~ll~iL~~L~~D 189 (240)
T 3l9t_A 130 EFCKKIEY---------------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF-----KENPNEAIRRIADLKED 189 (240)
T ss_dssp HHHHHHCT---------------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT-----TTCHHHHHHHHHTTTTC
T ss_pred HHHHhcCH---------------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh-----hcCHHHHHHHHHHhcCC
Confidence 99732222 23556777888999999999888775210000110 11122333445556688
Q ss_pred CChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHH
Q 035871 999 SNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHIL 1035 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aL 1035 (1127)
+.|.||-+-|.+|. +|....|+.++..++..
T Consensus 190 ~s~yVrKSVan~Lr------D~SK~~Pd~V~~~~~~w 220 (240)
T 3l9t_A 190 VSEYVRKSVGNALR------DISKKFPDLVKIELKNW 220 (240)
T ss_dssp SCHHHHHHHHHHHH------HHHTTCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHH------HHhhhCHHHHHHHHHHh
Confidence 99999999999999 89999999998777654
No 96
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.98 E-value=7 Score=51.03 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=51.0
Q ss_pred cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCC------------CCcchhchHHHHHHhhhhhhhh
Q 035871 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHD------------PLVSVRITASWALANICDSIRH 872 (1127)
Q Consensus 807 ~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D------------~~~~VRikAAWALGNL~d~L~~ 872 (1127)
+.++|.+|..++..+|.|.-|-. ..+.|+..+++.|+..+.| .+..||..|+-+|..||.....
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~--~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVT--YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGG--TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56899999999999988765543 4567888999999887766 2347999999999999987543
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=90.12 E-value=22 Score=45.56 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=115.5
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhh--hccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDS--ALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKF 840 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~--~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~a 840 (1127)
++.|.||..+|..+|.... -|.. ..+--..++.. ++. .+.|+++.||.+|+.++..++ +-+.|.. |++..
T Consensus 506 ~~hp~V~~~~~~~l~rys~-~~~~-~~~~l~~~L~~-ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~---~~~~i 579 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYAS-FFDY-ESAAIPALIEY-FVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN---YTESS 579 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGG-GGGT-CCTTHHHHHHH-HTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS---SHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHH-HhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh---HHHHH
Confidence 7789999999999999764 2222 22233345553 446 677899999999999999997 4344432 34555
Q ss_pred HHHHHHhcCC---CC------------------cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHH---H
Q 035871 841 IHAVEINTHD---PL------------------VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASL---T 896 (1127)
Q Consensus 841 i~aLl~~l~D---~~------------------~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L---~ 896 (1127)
+..+...+.- +. .+=+..---|+|.+.+......+ +. -..-..++..+ +
T Consensus 580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e----~~---~~~l~~ll~pl~~~l 652 (980)
T 3ibv_A 580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPE----EQ---ALYCDSLINALIGKA 652 (980)
T ss_dssp HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHH----HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHH----HH---HHHHHHHHHHHHHHH
Confidence 5555443331 10 01234466677777765321110 00 00111122222 2
Q ss_pred HHHHhhccCC-c-hhhh-hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc--cCCccchhhHHHHHHhhh
Q 035871 897 ESALNLTKDG-D-KIKS-NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT--TGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 897 e~aL~a~~D~-D-KVRs-nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~--~~n~KVRWNAc~ALGnl~ 971 (1127)
+..+.....+ + .++. ..+.|+|.+++.++..+. ++ ..-......+.+.++..+. .++..||=-+|.++.++.
T Consensus 653 ~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~-~~--~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i 729 (980)
T 3ibv_A 653 NAALSSDLSALENIISVYCSLMAIGNFAKGFPARGS-EE--VAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRII 729 (980)
T ss_dssp HHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC--CC--CSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccC-CC--CcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2333333333 2 2322 567888999887654321 11 0112235567777777776 577899999999999987
Q ss_pred ccccccccCCCchhHHHHHHH
Q 035871 972 LNETINLEDMDWAPSVFSILL 992 (1127)
Q Consensus 972 ~n~~i~~~~~~wa~~v~~~Ll 992 (1127)
.. +...-.+..+.+++.|+
T Consensus 730 ~~--lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 730 NV--VGPDMLPKVPQLISILL 748 (980)
T ss_dssp TT--THHHHTTTHHHHHHHHH
T ss_pred HH--ccHhHHHHHHHHHHHHH
Confidence 53 21112234444454444
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.11 E-value=3.7 Score=44.94 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=109.6
Q ss_pred cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHH----hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCC
Q 035871 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI----NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882 (1127)
Q Consensus 807 ~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~----~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~ 882 (1127)
.+.|.--|-+|+..|-... .++..-+-..++.++. .+-|+|.+|=.++--.|.-+-+.+... ++.+.+
T Consensus 56 fs~d~k~~~~ale~L~~~l-----~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~y~~~~- 127 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLA-----DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--ETPMSQ- 127 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHH-----HHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--TCCCCH-
T ss_pred cCCCHHHHHHHHHHHHHHh-----hhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--cccchH-
Confidence 3445555666655554331 1122111223333443 356999999999999999888887642 122211
Q ss_pred CcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhh
Q 035871 883 IDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWN 962 (1127)
Q Consensus 883 ~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWN 962 (1127)
.-...++..|++. +-+.+|+||..+-..|-.+....+ ..++++.+++.++++|.++|=-
T Consensus 128 ---~ea~~~lP~LveK---lGd~k~~vR~~~r~il~~l~~v~~---------------~~~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 128 ---EEVSAFVPYLLLK---TGEAKDNMRTSVRDIVNVLSDVVG---------------PLKMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp ---HHHHHHHHHHHHG---GGCSSHHHHHHHHHHHHHHHHHHC---------------HHHHHHHHHHGGGCSCHHHHHH
T ss_pred ---HHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHCC---------------HHHHHHHHHHHHccCCHHHHHH
Confidence 0112345555553 345566899887777765543322 3567888999999999999999
Q ss_pred HHHHHHhhhccccccccCCCchhHHH---HHHHHHHhcCCChHHHHHHHHHhc
Q 035871 963 VCRALSNLFLNETINLEDMDWAPSVF---SILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 963 Ac~ALGnl~~n~~i~~~~~~wa~~v~---~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+.-++.+...--+. ....+ +.++.++. ++|-.||-.|-.++.
T Consensus 187 ~l~~l~~li~~~G~~------~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 187 CLLVIEYYITNAGIS------PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHHHHCSG------GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC------ccccccchHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 999999997653222 13356 89999995 699999999999987
No 99
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.88 E-value=2.8 Score=53.62 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=148.6
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCC-CHhHHHHHHHHHhhhhc-ccccccchHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD-VASVRSAACRAIGVISC-FPQVSQSAEIIDK 839 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De-~~~VRaAA~RALGvlv~-~p~L~~d~~fv~~ 839 (1127)
.+-|..+.||.+|-.|...| +..+|.+-...++..|+ ..+... .+..+.+|...++.++- .|..- ...+.+
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~----~~~~~~~a~~~~~~~~~-~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~--~~~~~~ 175 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISI----VNAVNPVAIKALLPHLT-NAIVETNKWQEKIAILAAFSAMVDAAKDQV--ALRMPE 175 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHH----HHHSCGGGHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHSHHHH--HHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHHHhHHHH--HHhccc
Confidence 34577899999998887764 55667666666777655 444544 69999999999999972 22211 223567
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGN 919 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGn 919 (1127)
.++.+...+.|.-..|.-.|--++-.+|..+. |.+ +-+ .+..|+++ ..+.++|- ..+..||.
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d-----------~~~-~~~~~~~~----~~~p~~~~-~~~~~l~~ 237 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKD-----------IER-FIPSLIQC----IADPTEVP-ETVHLLGA 237 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTT-----------TGG-GHHHHHHH----HHCTTHHH-HHHHHHTT
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccc-----------hhh-hHHHHHHH----hcChhhhH-HHHHHhhc
Confidence 78888889999999999999999999997543 332 111 24555554 35666654 45777775
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
- .+-.. -+..-+--+++-|...|+....-++.-+|--.+||.+=-.-+..-.+..+.+.|.|-+....-.
T Consensus 238 ~-------tfv~~---v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 238 T-------TFVAE---VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIA 307 (986)
T ss_dssp C-------CCCSC---CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCC
T ss_pred C-------eeEee---ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccC
Confidence 4 12111 2223355678889999988888888899999999864211111112345667888888888889
Q ss_pred ChHHHHHHHHHhcC
Q 035871 1000 NFKIRIQAAAALAV 1013 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~ 1013 (1127)
+-.||--|..||.+
T Consensus 308 ~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 308 DPEAREVTLRALKT 321 (986)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999853
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.69 E-value=59 Score=41.80 Aligned_cols=268 Identities=11% Similarity=0.107 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhc
Q 035871 495 LHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALST 574 (1127)
Q Consensus 495 LHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~ 574 (1127)
+-..|..++..-++. -..+..+..+.+..+.. +.+=|-++ .+.+.+.+.+-++.. .++-||-....+++..
T Consensus 55 ~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~---~~~e~~~~-~~~~~~~~~~~dk~~--~v~~aa~~~~~~~~~~ 125 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA---ANAMQAVAHIANQSNLS---PSVEPYIV-QLVPAICTNAGNKDK--EIQSVASETLISIVNA 125 (986)
T ss_dssp HHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCC---TTTHHHHH-TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCC---CCcccchH-HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHh
Confidence 445566666665555 66666777776555431 12222222 234444444555543 3777888888888887
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHh
Q 035871 575 SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKA 654 (1127)
Q Consensus 575 ~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~ 654 (1127)
-+|..- . .+|+.|+.+......=..++-||+++..++..-|..+...+..+.-++.+++-+
T Consensus 126 ~~~~a~--~-----------------~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 186 (986)
T 2iw3_A 126 VNPVAI--K-----------------ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD 186 (986)
T ss_dssp SCGGGH--H-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHH--H-----------------HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc
Confidence 666442 1 245556666544444578999999999999877888887777777777777533
Q ss_pred hCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccch
Q 035871 655 ASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESS 734 (1127)
Q Consensus 655 ~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~ 734 (1127)
.-. .+..+|.+.+..+... .+..|+. ||
T Consensus 187 ~k~--------------------~v~~~~~~~~~~~~~~----~~n~d~~-------~~--------------------- 214 (986)
T 2iw3_A 187 TKK--------------------EVKAAATAAMTKATET----VDNKDIE-------RF--------------------- 214 (986)
T ss_dssp SSH--------------------HHHHHHHHHHHHHGGG----CCCTTTG-------GG---------------------
T ss_pred CcH--------------------HHHHHHHHHHHHHHhc----CCCcchh-------hh---------------------
Confidence 211 4555677777655321 1111111 00
Q ss_pred hhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHH
Q 035871 735 EDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVR 814 (1127)
Q Consensus 735 ~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VR 814 (1127)
.| .|..++.+++. .-.|+-.+++..|..-=..--..++..|+...+++....++
T Consensus 215 ------~~---------------~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~ 268 (986)
T 2iw3_A 215 ------IP---------------SLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 268 (986)
T ss_dssp ------HH---------------HHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred ------HH---------------HHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhh
Confidence 01 22234444432 11233333333344322222233444577777899999999
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHH----HHHHHhc-CCCCcchhchHHHHHHhhhhhhh
Q 035871 815 SAACRAIGVISCFPQVSQSAEIIDKFI----HAVEINT-HDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 815 aAA~RALGvlv~~p~L~~d~~fv~~ai----~aLl~~l-~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
-.++=.+++++. |-+|+.-+..|+ +.+.+.. +=.++.||-.|..|+.-|.....
T Consensus 269 r~~~~~~~n~~~---lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 269 RKSAVIIDNMCK---LVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHT---TCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred eeeEEEEcchhh---hcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 888888888863 345655455555 4444433 35667899999999998876543
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.73 E-value=1.5 Score=47.37 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=71.5
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
.-.|++-.||..++.+++.+-.. .=|+. .+. ++...++|+|+.||-+|+..+=.++.-|.+..|+ +.++
T Consensus 112 va~D~~WrVre~lA~a~~~~~~~---~~pe~----~l~-~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp---~~ll 180 (240)
T 3l9t_A 112 VSKDNNWRVQEVLAKAFDEFCKK---IEYKK----ALP-IIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENP---NEAI 180 (240)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---HCTTT----THH-HHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCH---HHHH
T ss_pred hCCCCCccHHHHHHHHHHHHHHh---cCHHH----HHH-HHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCH---HHHH
Confidence 34577889999999999975421 11211 222 3457789999999999998875566556666776 5667
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 842 HAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
+.|.....|++.-||-.-+|+|-.++-
T Consensus 181 ~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 181 RRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp HHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 777778899999999999999998874
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=83.11 E-value=54 Score=40.20 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=119.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHH------HHHHhhhccCCCHhHHHHHHHHHhhhhcccc-c
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFII------SSLIDSALHDDVASVRSAACRAIGVISCFPQ-V 830 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i------~~Lll~~~~De~~~VRaAA~RALGvlv~~p~-L 830 (1127)
.|-.+|+.++..+|-.++.+|..+-... |.+.|+.++ +.| ..+++|+...||..|.-.|..++.-.. +
T Consensus 126 ~Ll~lL~~~df~vR~~alqlL~~L~~~r----~~~~Q~~Il~~p~gi~~L-v~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 126 LLLSLLEEFDFHVRWPGVKLLTSLLKQL----GPQVQQIILVSPMGVSRL-MDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHS----HHHHHHHHHHSTTHHHHH-HGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHhcC----cHHHHHHHHhCcccHHHH-HHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 3446678889999999999999875432 333455544 224 477899999999999999998862111 1
Q ss_pred ccchHHHHHHHHHHHHhcCCCCc----chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC
Q 035871 831 SQSAEIIDKFIHAVEINTHDPLV----SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906 (1127)
Q Consensus 831 ~~d~~fv~~ai~aLl~~l~D~~~----~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~ 906 (1127)
..=..| +.+.+.|...++.... .|=....-.|.||...=..|..- |.+ ....+. |..|++ . +.
T Consensus 201 QklVAF-EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~--FrE---t~~i~~-L~~LL~----~--~~ 267 (651)
T 3grl_A 201 QKIVAF-ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNF--FKE---GSYIQR-MKPWFE----V--GD 267 (651)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHH--HHH---TTCGGG-GGGGGC----C--CS
T ss_pred HHHHHH-hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHH--HHH---cCCHHH-HHHHhC----C--Cc
Confidence 110111 2334455544443332 22223333355555421111100 000 000000 111211 1 11
Q ss_pred ch------hhhhHHHHHhhhhhccccCCCC-CCCCCCChhHHHHHHHHHHHhhccC--CccchhhHHHHHHhhhccccc-
Q 035871 907 DK------IKSNAVRGLGNLSRFVKYTSSS-HPASLGDSRWLERIVQALVSCVTTG--NVKVQWNVCRALSNLFLNETI- 976 (1127)
Q Consensus 907 DK------VRsnAvRALGnLl~~l~~~~~~-~~~~~g~~~~~E~~i~aLlk~l~~~--n~KVRWNAc~ALGnl~~n~~i- 976 (1127)
+. .-.|..-+|.-+--++.+.... +...++..-+-..++..|++.+... ..+||-.|..++|.+.++...
T Consensus 268 ~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~ 347 (651)
T 3grl_A 268 ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN 347 (651)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 11 2334333332222112211100 0000011112334566777776543 578999999999998754322
Q ss_pred c-------ccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 977 N-------LEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 977 ~-------~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
. .+..+-.+.++..|+..+.+..-|.+|..|+..|.
T Consensus 348 Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ 390 (651)
T 3grl_A 348 QDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390 (651)
T ss_dssp HHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1 11111234566667777777777999999988875
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.11 E-value=52 Score=42.68 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHhccchhHHhhcch-hH---HHHHHHHHHhhhccCC-----CHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLK-ET---QEFIISSLIDSALHDD-----VASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~-~~---q~~~i~~Lll~~~~De-----~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
+-..+.++|=|+|.|.. . +.. .. -..++. .++.+++.. -+.|++..+..+|.|.-|- ..+..|+
T Consensus 492 sW~~lea~~~aigaIag-~---~~~~~E~~~Lp~vi~-~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl--~~h~~~L 564 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISG-A---MHEEDEKRFLVTVIK-DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL--RAHWKFL 564 (1073)
T ss_dssp CHHHHHHHHHHHHHTTT-S---SCHHHHHHHHHHHHH-HHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH--HHCHHHH
T ss_pred CHHHHhHHHHHHHHHHC-c---CCcccccchHHHHHH-HHhcccccccccchhHHHHHHHHHHHhhhHHHH--HhCHHHH
Confidence 36789999999999943 2 222 12 123555 344666433 4557777789999986443 3568899
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhc
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHC 873 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~ 873 (1127)
+..++.|++.++|++..|+.-|+=||..||......
T Consensus 565 ~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 565 KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875543
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=81.39 E-value=13 Score=40.77 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=117.0
Q ss_pred hhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhh----hccCCCHhHHHHHHHHHhhhh
Q 035871 750 QWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDS----ALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 750 ~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~----~~~De~~~VRaAA~RALGvlv 825 (1127)
.|...+..-+-..+.+.+..-|-+|++.|-..-++. |+ .-..++. +++. .+.|.|+.|-..+...|..++
T Consensus 42 ~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~----~~-~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~ 115 (266)
T 2of3_A 42 LLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTS----PR-SLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIV 115 (266)
T ss_dssp HHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHC----HH-HHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhC----hH-HHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 444444555556667778888888888887732221 11 1111111 1222 235899999999999887764
Q ss_pred ccc-ccc-cchHH-HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHH-HHHHHHHHHHh
Q 035871 826 CFP-QVS-QSAEI-IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSH-LMASLTESALN 901 (1127)
Q Consensus 826 ~~p-~L~-~d~~f-v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~-lL~~L~e~aL~ 901 (1127)
..- ... .-..+ ...+++.|+..+.|+...||.++--.|-.|+.. .+++ +...+++ ++
T Consensus 116 ~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-----------------~~~~~v~~~l~~-g~- 176 (266)
T 2of3_A 116 ELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-----------------VGPLKMTPMLLD-AL- 176 (266)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-----------------HCHHHHHHHHHH-GG-
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-----------------CCHHHHHHHHHH-HH-
Confidence 211 100 00112 357789999999999999999888777666532 2232 3444555 22
Q ss_pred hccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHH---HHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 902 LTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIV---QALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 902 a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i---~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
..-|-++|.-...-+|.+..---. . ..+++ ..+.+++.|.|..||=.|-.++..+++.
T Consensus 177 -ksKN~R~R~e~l~~l~~li~~~G~-----------~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 177 -KSKNARQRSECLLVIEYYITNAGI-----------S--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp -GCSCHHHHHHHHHHHHHHHHHHCS-----------G--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHHHHHHHHHhcCC-----------C--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 223458999999999988532111 1 12356 8889999999999999998888877754
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=77.88 E-value=15 Score=43.47 Aligned_cols=134 Identities=17% Similarity=0.151 Sum_probs=95.1
Q ss_pred HHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccc
Q 035871 896 TESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 896 ~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~ 975 (1127)
++..+.+.+.++|+|.=|+.-++... . .++.+.+++|+++++..++.+.+||-+|..+|..+.+.
T Consensus 31 y~~Il~~~kg~~k~K~LaaQ~I~kff---k----------~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-- 95 (507)
T 3u0r_A 31 YQVILDGVKGGTKEKRLAAQFIPKFF---K----------HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-- 95 (507)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHG---G----------GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH---h----------hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--
Confidence 44556678888999987776666553 2 23457899999999999999999999999999998875
Q ss_pred ccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHH
Q 035871 976 INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVAL 1055 (1127)
Q Consensus 976 i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L 1055 (1127)
.|...|...|.++|+.+. ...+...-.||.. .|-..-..+..+++.-+.+ ++ +..
T Consensus 96 ------~~i~kiaDvL~QlLqtdd-~~E~~~V~~sL~s-----llk~Dpk~tl~~lf~~i~~--~~-----------e~~ 150 (507)
T 3u0r_A 96 ------ENLPRVADILTQLLQTDD-SAEFNLVNNALLS-----IFKMDAKGTLGGLFSQILQ--GE-----------DIV 150 (507)
T ss_dssp ------TCHHHHHHHHHHHTTCCC-HHHHHHHHHHHHH-----HHHHCHHHHHHHHHHHHHH--SC-----------HHH
T ss_pred ------hhhhhHHHHHHHHHhccc-hHHHHHHHHHHHH-----HHhcChHHHHHHHHHHHcc--cc-----------hHH
Confidence 588999999999998655 3455555556652 2223334566666666665 21 466
Q ss_pred HHHHHHHHHHHHHH
Q 035871 1056 QKQKSSFLEEWFKV 1069 (1127)
Q Consensus 1056 ~~Q~~~~l~~~l~~ 1069 (1127)
|+-+=.||.+-|+-
T Consensus 151 Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 151 RERAIKFLSTKLKT 164 (507)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhh
Confidence 66666777555443
No 106
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=76.58 E-value=22 Score=46.03 Aligned_cols=146 Identities=8% Similarity=0.074 Sum_probs=89.9
Q ss_pred CCHhHHHHHHHHHhhhhccccccc--chHHHHHHHHHHHHhcCCC-----CcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 809 DVASVRSAACRAIGVISCFPQVSQ--SAEIIDKFIHAVEINTHDP-----LVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 809 e~~~VRaAA~RALGvlv~~p~L~~--d~~fv~~ai~aLl~~l~D~-----~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
-++..+-|+|+|+|-++ .++.. +..|+-..++.|+...+.+ ..-||....|.+|+.++=+..+.
T Consensus 491 ~sW~~lea~~~aigaIa--g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~------- 561 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSIS--GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW------- 561 (1073)
T ss_dssp CCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-------
T ss_pred CCHHHHhHHHHHHHHHH--CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH-------
Confidence 45889999999999996 24443 4467778888887665544 34567777799999999876432
Q ss_pred CCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccch
Q 035871 882 SIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQ 960 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVR 960 (1127)
+.+...++..++...| +++|..-|+.|+-+|.+-....-.. ....+...+++.+++.+-+...+-..+-.
T Consensus 562 --------~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~-~~~~e~~p~i~~il~~~~~~~~~l~~~~~ 632 (1073)
T 3gjx_A 562 --------KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQ-VQVGEVMPFIDEILNNINTIICDLQPQQV 632 (1073)
T ss_dssp --------HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTS-CCTTCSSCHHHHHHTSHHHHHTTCCHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHHHHHHhcCHHHH
Confidence 2344444444444554 5689999999999998766643211 00011122445555555444444444444
Q ss_pred hhHHHHHHhhhc
Q 035871 961 WNVCRALSNLFL 972 (1127)
Q Consensus 961 WNAc~ALGnl~~ 972 (1127)
---..|+|.+..
T Consensus 633 ~~lyeav~~vi~ 644 (1073)
T 3gjx_A 633 HTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=75.77 E-value=26 Score=42.84 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCch
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPST 464 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~ 464 (1127)
.+|..|++||.+|+...+.. +|..++-.. . . .+-+-.+|.|+...+|..|+-+|..|-.+..-
T Consensus 137 ~vR~~alqlL~~L~~~r~~~---~Q~~Il~~p-~-----g-i~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQ---VQQIILVSP-M-----G-VSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHH---HHHHHHHST-T-----H-HHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCcHH---HHHHHHhCc-c-----c-HHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 69999999999999987644 677776321 1 1 23345578999999999999999999888644
No 108
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=73.03 E-value=15 Score=44.60 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEIN 847 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~ 847 (1127)
+.||..|+.+||.+ ..||.+. .++..++ .......+.||-.+.-.|.-+ -.+-.+ +..++++++..
T Consensus 242 APVRETaAQtLGaL-----~hLp~e~--~IL~qLV-~~l~~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~G 307 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-----YPLIGPN--DIIEQLV-GFLDSGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSL 307 (800)
T ss_dssp CHHHHHHHHHHHHH-----TTTSCSC--CHHHHHT-TGGGCSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-----HhCChhH--HHHHHHH-hhcCCCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhh
Confidence 57999999999986 3567662 2333343 344778899999998888755 222222 57889999999
Q ss_pred cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccC
Q 035871 848 THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYT 927 (1127)
Q Consensus 848 l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~ 927 (1127)
+.|++..||.-||-+|--+. .. + .+ +.++..+-++ ..|.|+.-++....++-|..+....
T Consensus 308 L~D~DDDVRAVAAetLiPIA-----~p-----~-----~l-~~LL~iLWd~----L~~LDDLSASTgSVMdLLAkL~s~p 367 (800)
T 3oc3_A 308 LSSPDEDIKLLSAELLCHFP-----IT-----D-----SL-DLVLEKCWKN----IESEELISVSKTSNLSLLTKIYREN 367 (800)
T ss_dssp TTCSSHHHHHHHHHHHTTSC-----CS-----S-----TH-HHHHHHHHHH----HHTCCSCCTTHHHHHHHHHHHHHHC
T ss_pred cCCcccHHHHHHHHHhhhhc-----ch-----h-----hH-HHHHHHHHHH----hhhhcccchhhHHHHHHHHHHHcCC
Confidence 99999999999998888777 10 0 11 2233333333 2333445555555555555544443
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 035871 928 SSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQA 1007 (1127)
Q Consensus 928 ~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~A 1007 (1127)
.. ...++ ..++.|--+++..-..||-.+-.+|-.++.. .++.-+-+-+-=.+|..||--+
T Consensus 368 ~~----a~~dp----~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~------------~~LRLIFQNILLE~neeIl~lS 427 (800)
T 3oc3_A 368 PE----LSIPP----ERLKDIFPCFTSPVPEVRTSILNMVKNLSEE------------SIDFLVAEVVLIEEKDEIREMA 427 (800)
T ss_dssp TT----CCCCS----GGGGGTGGGGTCSSHHHHHHHHHHTTTCCCH------------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred cc----cccCh----HHHHHHHhhhcCCcHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHhCCcHHHHHHH
Confidence 21 11222 4556677777888888998888888666611 2222222222235777888777
Q ss_pred HHHh
Q 035871 1008 AAAL 1011 (1127)
Q Consensus 1008 A~AL 1011 (1127)
-.+.
T Consensus 428 ~~VW 431 (800)
T 3oc3_A 428 IKLL 431 (800)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 109
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=71.80 E-value=1e+02 Score=32.25 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=100.3
Q ss_pred cchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc-hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhh
Q 035871 789 LLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS-AEIIDKFIHAVEINTHDPLVSVRITASWALANIC 867 (1127)
Q Consensus 789 Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d-~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~ 867 (1127)
|++|.|.+--. +. .++.+ ..|.+|...|-.= |.+..= +-|+.-+.+.+-.++.| ...-..+-.+.
T Consensus 5 LS~Elq~yf~~-It-~a~~~---~~r~~aL~sL~~D---~gL~~LlPyf~~fI~~~v~~nl~~------l~~L~~lm~~~ 70 (196)
T 4atg_A 5 LPKELQLYFDK-IL-SMIKS---DMKDIAIECLEKE---SGLQQLVPYFIQHISELILKSFKE------AEVLKTCIALY 70 (196)
T ss_dssp SCHHHHHHHHH-HH-HHHTS---TTHHHHHHHHHHC---SSCTTTHHHHHHHHHHHHHHCTTC------HHHHHHHHHHH
T ss_pred cCHHHHHHHHH-HH-HHHHh---HHHHHHHHHHhcC---CChhhhHHHHHHHHHHHHHhccCC------HHHHHHHHHHH
Confidence 77888887543 22 33333 4588877777542 233222 22333334566555653 33556778888
Q ss_pred hhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHH
Q 035871 868 DSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQA 947 (1127)
Q Consensus 868 d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~a 947 (1127)
.+|..|.. ...++|. -+++..++.+++...-..+.+|-.|++-|+.+.+-..... +.+..++++.
T Consensus 71 ~ALl~N~~-l~lepYl-----H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y---------~~L~~RI~~t 135 (196)
T 4atg_A 71 FSLIKNKH-VFIDPYL-----HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY---------KTLAPRVLKT 135 (196)
T ss_dssp HHHHHCTT-CCCGGGH-----HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS---------TTHHHHHHHH
T ss_pred HHHHcCCC-CChHHHH-----HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC---------chHHHHHHHH
Confidence 88888764 3344433 3566667776663222333799999999999986654321 2356889999
Q ss_pred HHHhhcc--CCccchhhHHHHHHhhhcc
Q 035871 948 LVSCVTT--GNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 948 Llk~l~~--~n~KVRWNAc~ALGnl~~n 973 (1127)
|.+.+.| .+.....-|-++|+.++.+
T Consensus 136 l~k~l~dp~~~l~t~YGAi~GL~~lG~~ 163 (196)
T 4atg_A 136 LKGVWMDPNRSEDSQYGALYCLSILSKN 163 (196)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHhHHH
Confidence 9999865 6788999999999999873
No 110
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=67.28 E-value=23 Score=46.31 Aligned_cols=188 Identities=9% Similarity=0.157 Sum_probs=108.5
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccC------CCHhHHHHHHHHHhhhh--cccccccchHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHD------DVASVRSAACRAIGVIS--CFPQVSQSAEI 836 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~D------e~~~VRaAA~RALGvlv--~~p~L~~d~~f 836 (1127)
..++.||-.|...|-+.-...|..+|.+.+..+-..++..+.+. .++.||...+.++..++ .||. +=+.|
T Consensus 58 s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~--~Wp~l 135 (1204)
T 3a6p_A 58 TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ--HWPDM 135 (1204)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT--TCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc--cchHH
Confidence 44688999999999886666788899988777665544333322 56899999999999987 4452 22344
Q ss_pred HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccc-------cHHHHHHHHHHHHhhc------
Q 035871 837 IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA-------NSHLMASLTESALNLT------ 903 (1127)
Q Consensus 837 v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~i-------s~~lL~~L~e~aL~a~------ 903 (1127)
+.+.+..+ .. +...+..+-..|.-|++..... ... .......+ -++++..+.+. ++..
T Consensus 136 l~~L~~~~----~~-~~~~~e~~L~iL~~L~Eev~~~-~~~--~~~r~~~l~~~l~~~~~~I~~~~~~i-L~~~~~~~~~ 206 (1204)
T 3a6p_A 136 LIELDTLS----KQ-GETQTELVMFILLRLAEDVVTF-QTL--PPQRRRDIQQTLTQNMERIFSFLLNT-LQENVNKYQQ 206 (1204)
T ss_dssp HHHHHHHH----HT-CHHHHHHHHHHHHHHHHHHHTS-CCS--CHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHh----cC-CHHHHHHHHHHHHHHHHHHccc-cch--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 55554433 22 4456777888888888765431 100 00000000 01111222221 1110
Q ss_pred -----------cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 904 -----------KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 904 -----------~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
..++.++..|.+++++.+.+++...+.+ .+ ...++.++..+. +.++|--|+-.|-.+..
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~----~~----~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 207 VKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITA----EN----CKLLEILCLLLN--EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp HTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHT----TT----SHHHHHHHHGGG--CTTTHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHh----cc----chHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 1223577788888888877666422100 00 125555555544 57788888888888775
Q ss_pred c
Q 035871 973 N 973 (1127)
Q Consensus 973 n 973 (1127)
.
T Consensus 277 ~ 277 (1204)
T 3a6p_A 277 R 277 (1204)
T ss_dssp C
T ss_pred C
Confidence 3
No 111
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=66.90 E-value=55 Score=37.66 Aligned_cols=242 Identities=14% Similarity=0.203 Sum_probs=133.6
Q ss_pred HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhc
Q 035871 794 QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHC 873 (1127)
Q Consensus 794 q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~ 873 (1127)
++.++. ++..+-...+ ..|..-.+-+-.++. ..|+.++..+.+.|+.--.|++..||--.+--|+..|.. .
T Consensus 24 ~~~v~~-lln~A~~~~~-~~Kl~~L~q~~EL~l----~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~ 94 (386)
T 3o2t_A 24 SERVVD-LLNQAALITN-DSKITVLKQVQELII----NKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D 94 (386)
T ss_dssp HHHHHH-HHHHHHHCCS-THHHHHHHHHHHHHH----TTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C
T ss_pred HHHHHH-HHHhhhccCh-HHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H
Confidence 345554 4445433222 478888888888754 345666778888888888899999998777777766642 1
Q ss_pred ccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCC-C-ChhH--HHHHHHHH
Q 035871 874 IDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASL-G-DSRW--LERIVQAL 948 (1127)
Q Consensus 874 ~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~-g-~~~~--~E~~i~aL 948 (1127)
. +. +..+++....+.+|.| -|...++-+.+++-+.+=.--..++... . ...| +..+-+.+
T Consensus 95 ~-----------el----~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~I 159 (386)
T 3o2t_A 95 I-----------EL----LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDI 159 (386)
T ss_dssp G-----------GG----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
T ss_pred H-----------HH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 1 12 3333343344456666 5888999999988422111000011000 0 0122 34445566
Q ss_pred HHhhccCCccchhhHHHHHHhhh--ccc-------------ccccc-----C--------CCchhHHHHHHHHHHhcCC-
Q 035871 949 VSCVTTGNVKVQWNVCRALSNLF--LNE-------------TINLE-----D--------MDWAPSVFSILLLLLRDSS- 999 (1127)
Q Consensus 949 lk~l~~~n~KVRWNAc~ALGnl~--~n~-------------~i~~~-----~--------~~wa~~v~~~Ll~ll~~~~- 999 (1127)
++...++|.-||-.|.--+..+. ..+ .+.+. . ...+...+..|+..+.+..
T Consensus 160 l~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~i 239 (386)
T 3o2t_A 160 ILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAI 239 (386)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccc
Confidence 66677788888888887776653 111 11110 0 1346788999999997533
Q ss_pred ---ChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 035871 1000 ---NFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFKV 1069 (1127)
Q Consensus 1000 ---NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~~ 1069 (1127)
|+-+=+++-..|+ ..|..|+ ..|+.+|+ .+..+.+..++.-. ...+++.+|.+|-.-||+
T Consensus 240 ss~~l~a~lnsLa~Ia--k~RP~~~---~rIl~aL~----~l~~n~p~t~sk~q-vkSv~KtLR~~Ll~lLK~ 302 (386)
T 3o2t_A 240 SSINLTTALGSLANIA--RQRPMFM---SEVIQAYE----TLHANLPPTLAKSQ-VSSVRKNLKLHLLSVLKH 302 (386)
T ss_dssp CHHHHHHHHHHHHHHH--HHSGGGH---HHHHHHHH----HHHHCC----CGGG-HHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHH--HhcHHHH---HHHHHHHH----hhcCCCCccHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 4444444444443 2455553 34665444 44334444453333 367777788777666664
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=66.73 E-value=22 Score=45.91 Aligned_cols=111 Identities=17% Similarity=0.100 Sum_probs=75.9
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
.+++.+|..|.-++|.|.+-...++- .|. ....+.+.+.|.+.++.++..-+--+-.||||++.-.
T Consensus 406 ~~~~~l~~ta~La~gslV~k~c~~~~----~c~-~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~--------- 471 (1056)
T 1lsh_A 406 RNRPILRKTAVLGYGSLVFRYCANTV----SCP-DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN--------- 471 (1056)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHTTCS----SCC-GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG---------
T ss_pred ccCHHHHHHHHHHHHHHHHHHhccCC----CCC-HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh---------
Confidence 35667899999999999887665431 121 2346777888888888888888889999999999643
Q ss_pred hhHHHHHHHHHHhcC------CChHHHHHHHHHhcCCCcccccCCchHH-HHHHHHHHHHH
Q 035871 984 APSVFSILLLLLRDS------SNFKIRIQAAAALAVPSSVSDYGKSFSD-VVQGLEHILEN 1037 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~~------~NFKVRi~AA~AL~~p~~R~~yG~~~~~-V~~~L~~aLe~ 1037 (1127)
+++.|...+..+ ....||..|..||.. +....+. |..-+...+.+
T Consensus 472 ---~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~------~~~~~p~~v~~il~~i~~n 523 (1056)
T 1lsh_A 472 ---SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRN------IAKRDPRKVQEIVLPIFLN 523 (1056)
T ss_dssp ---GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTT------GGGTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHhhcCccccccccchHHHHHHHHHHHH------hhhhchHHHHHHHHHHhcC
Confidence 456777776431 234688889999984 3345554 44444555543
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=61.19 E-value=1.2e+02 Score=32.79 Aligned_cols=105 Identities=12% Similarity=0.227 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 792 ~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
..++.+++ ++..+-...+ ..|-...+-+-.+++ ..|+.++..+++.++.-..|++..||.--+--++..|..
T Consensus 12 ~~~~~v~~-lln~A~~~~~-~~kl~~L~qa~el~~----~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-- 83 (257)
T 3gs3_A 12 TARAKVVD-WCNELVIASP-STKCELLAKVQETVL----GSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-- 83 (257)
T ss_dssp HHHHHHHH-HHHHHTTCCH-HHHHHHHHHHHHHHT----TTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHH-HHHHhhhcCc-HHHHHHHHHHHHHHH----ccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--
Confidence 34666776 5666644344 588888888888765 457888999999999888899999998888777777732
Q ss_pred hcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
. ..+ +...++....+.+|+| -|..+|+-+.+++
T Consensus 84 -k-----------~~l----~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 84 -K-----------VEL----LPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp -C-----------GGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -H-----------HHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0 122 3344444444566766 5888899998888
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=56.67 E-value=28 Score=41.29 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 811 ASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 811 ~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
+-++--|+.-++.|. .||++.+ .++++++...+|.+..||..|.-.|..+|.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDEDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCC
T ss_pred HHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhhHHHhh
Confidence 455555555555554 5555532 455666666666666666666655555553
No 115
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=53.97 E-value=1.7e+02 Score=37.56 Aligned_cols=202 Identities=14% Similarity=0.109 Sum_probs=110.4
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhcc---CCCHhHHHHHHHHHhhhhcccc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALH---DDVASVRSAACRAIGVISCFPQ 829 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~---De~~~VRaAA~RALGvlv~~p~ 829 (1127)
.+|.. |..+.....+.||..|..+|-++. ..+|. -+..++..++-.+-. +.+...---|...|..=...-.
T Consensus 133 ~ll~d-L~~Ls~S~Y~~VR~~AQ~~L~~~~----~~~~g-s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 133 LLLVD-IIQLATSLYPDIYKPAQGTLVHCM----KQLVG-SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHH-HHHHHTSSCHHHHHHHHHHHHHHH----TTBTT-HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH
T ss_pred HHHHH-HHHHhcCchHHHHHHHHHHHHHHH----Hhccc-HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH
Confidence 34443 334556667999999999998853 23332 234455555543333 4454444444444431111122
Q ss_pred cccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc------cc--CCCCCCccccc-------------
Q 035871 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCID------DF--AFKPSIDSNAN------------- 888 (1127)
Q Consensus 830 L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~------~~--~~~~~~~~~is------------- 888 (1127)
+..|-.++.+++++|+...+-..++|+.-+.-+..++.+....... +. ...+. ++.+.
T Consensus 207 ~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~-d~~i~~~~~~~~~~~~~~ 285 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPP-DGTINLQVEAVKLAKKKK 285 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCS-CSSTTSHHHHHHHHTTHH
T ss_pred HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 3478888999999999998777788887777554555543211000 00 00000 11111
Q ss_pred ----HHHHHHHHHHHHhhccCC----chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccch
Q 035871 889 ----SHLMASLTESALNLTKDG----DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQ 960 (1127)
Q Consensus 889 ----~~lL~~L~e~aL~a~~D~----DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVR 960 (1127)
.+.+..|.+.++...+++ =|....++|-|=++.- ..+. + ...+++.-+++.+.+..+.+|
T Consensus 286 r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~--r~d~---~-------~~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 286 REYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQS--NLES---K-------PDKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTC--CSSC---C-------CCHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh--cCCC---C-------CCHHHHHHHHHhhcCCCHHHH
Confidence 122334444444443222 2455555555333320 1111 0 125688899999999999999
Q ss_pred hhHHHHHHhhhcc
Q 035871 961 WNVCRALSNLFLN 973 (1127)
Q Consensus 961 WNAc~ALGnl~~n 973 (1127)
..|..++..++..
T Consensus 354 ~~a~~~l~~il~~ 366 (997)
T 1vsy_5 354 HLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999777643
No 116
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=53.73 E-value=1.1e+02 Score=37.25 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHH-HHhhcc----CCc--hhhhh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTES-ALNLTK----DGD--KIKSN 912 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~-aL~a~~----D~D--KVRsn 912 (1127)
+.+.|...+=|+.+.||=-||=+|-.|...-...... . + ..+.++..+|+.. ||---. |.- .||-.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR-~-~-----~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRET 247 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDI-Q-I-----RVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDA 247 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----C-C-C-----CCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCce-e-c-----cccHHHHHHHHHHHHhccccccccCeeeeehHHH
Confidence 4455666678999999999999999988764322111 0 1 1122344444432 221111 333 59999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh---ccccccccCCCchhHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF---LNETINLEDMDWAPSVFS 989 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~---~n~~i~~~~~~wa~~v~~ 989 (1127)
|+-+||-+ .-++.+. .++..|++.+... -|.+||+ |-++ -.+-+. . -+.|++
T Consensus 248 aAQtLGaL-~hLp~e~--------------~IL~qLV~~l~~~----~WEVRHG-GLLGLKYL~DLL~--~---Ld~Vv~ 302 (800)
T 3oc3_A 248 AAYLLSRI-YPLIGPN--------------DIIEQLVGFLDSG----DWQVQFS-GLIALGYLKEFVE--D---KDGLCR 302 (800)
T ss_dssp HHHHHHHH-TTTSCSC--------------CHHHHHTTGGGCS----CHHHHHH-HHHHHHHTGGGCC--C---HHHHHH
T ss_pred HHHHHHHH-HhCChhH--------------HHHHHHHhhcCCC----Ceeehhh-hHHHHHHHHHHHH--H---HHHHHH
Confidence 99999998 5555431 1334444433322 3999986 2222 222222 1 678999
Q ss_pred HHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 990 ILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 990 ~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+++..|.| .+=.||--||.+|.-.... .....++..+-+.|.+
T Consensus 303 aVL~GL~D-~DDDVRAVAAetLiPIA~p----~~l~~LL~iLWd~L~~ 345 (800)
T 3oc3_A 303 KLVSLLSS-PDEDIKLLSAELLCHFPIT----DSLDLVLEKCWKNIES 345 (800)
T ss_dssp HHHHHTTC-SSHHHHHHHHHHHTTSCCS----STHHHHHHHHHHHHHT
T ss_pred HHHhhcCC-cccHHHHHHHHHhhhhcch----hhHHHHHHHHHHHhhh
Confidence 99999965 6779999999999744421 2333444444444444
No 117
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=45.51 E-value=48 Score=42.60 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=110.8
Q ss_pred hHHHHHh-hHHHHHc---cCC-hhHHHH-HHHHHhccchhHHhhcchhHHHHHHHHHHhhhcc-CCCHhHHHHHHHHHhh
Q 035871 751 WSEMIEK-HMPLILQ---HIS-SMVRTA-AVTCFAGITSSVFFSLLKETQEFIISSLIDSALH-DDVASVRSAACRAIGV 823 (1127)
Q Consensus 751 W~~iie~-~Lp~~l~---d~~-~~VRaa-Ac~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~-De~~~VRaAA~RALGv 823 (1127)
+...+.. ++|.++. +++ ..+... |..|+..|.... ++.+.-..++..+ ....+ +.+. +|.++..-|=+
T Consensus 753 l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~~~~~~~~l~~l-~~~~~~s~sW-~R~~~L~~lq~ 827 (997)
T 1vsy_5 753 LVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IRKNHVAAIVDYV-CSSNVALSSN-QTKLQLAFIQH 827 (997)
T ss_dssp HHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CCHHHHHHHHHHS-SCTTTTSCSS-SHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CCHHHHHHHHHHH-HHHHhcCCcH-HHHHHHHHHHH
Confidence 3444444 5665543 111 234444 445566554322 3555556666654 34444 5677 99999988877
Q ss_pred hhc--ccccccchHHHHHHHHHHHHhcCCCC-cchhchHHHHHHhhhhhh-hhcccccCCCCCCcccccHHHHHHHHHHH
Q 035871 824 ISC--FPQVSQSAEIIDKFIHAVEINTHDPL-VSVRITASWALANICDSI-RHCIDDFAFKPSIDSNANSHLMASLTESA 899 (1127)
Q Consensus 824 lv~--~p~L~~d~~fv~~ai~aLl~~l~D~~-~~VRikAAWALGNL~d~L-~~~~~~~~~~~~~~~~is~~lL~~L~e~a 899 (1127)
++. ...+..+. .....+.++..|.|++ ..||..||-+|+-|.-+. -.. .. .+++..+.+.+
T Consensus 828 ~~f~n~f~l~~~~--~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~------------~~-~~li~~f~~~~ 892 (997)
T 1vsy_5 828 FLSAELLQLTEEE--KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQ------------PL-LSLIERFAKGL 892 (997)
T ss_dssp HHHHHTTTSCTTH--HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHH------------HH-HHHHHHHTTSS
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchh------------hH-HHHHHHHHHHH
Confidence 652 22233322 2456677888899999 999999999999884321 000 00 01111111110
Q ss_pred Hh---------hccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhh
Q 035871 900 LN---------LTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 900 L~---------a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl 970 (1127)
.+ .....+..|=.||=+||-+..-.++.- .-+.|+-.++..|.+...+..+ |+=.+=.+|++-
T Consensus 893 ~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v-------P~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseF 964 (997)
T 1vsy_5 893 DVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF-------PLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEF 964 (997)
T ss_dssp TTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS-------SCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHH
T ss_pred hhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC-------CCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Confidence 00 000111455678888998876555531 1156998899888888877544 777777777775
Q ss_pred hc
Q 035871 971 FL 972 (1127)
Q Consensus 971 ~~ 972 (1127)
.+
T Consensus 965 kr 966 (997)
T 1vsy_5 965 KK 966 (997)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 118
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=40.96 E-value=1.1e+02 Score=34.01 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHhcc-chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc---hHHHHHHHH
Q 035871 767 SSMVRTAAVTCFAGI-TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS---AEIIDKFIH 842 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~I-gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d---~~fv~~ai~ 842 (1127)
.+..+-.++++++|+ ....+..+=-..++.++.. +..+..+.+.++|.|++..+=+|..+-.-..+ ...+-.++.
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~-~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSH-AIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHH-HHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 466788899999886 3233322222345667764 44556678999999999999888644221111 211223333
Q ss_pred HHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 843 AVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 843 aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
+++. +..+..+-.++-=||||+..
T Consensus 240 ~il~--~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 240 TILE--VVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHT--TCCCHHHHHHHHHHHHHHHT
T ss_pred HHHh--ccCCHHHHHHHHHHHHHHHh
Confidence 4433 23455788888889998884
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=33.25 E-value=6e+02 Score=29.07 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=63.0
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc------ccc----
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV------SQS---- 833 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L------~~d---- 833 (1127)
.|.+..||..+.+-++..+.... +.-..++..| ..+++|+++.|--.++-+.+.+ ||.. ...
T Consensus 73 ~d~~~~vRk~~a~FieEa~~~~~-----el~~~~l~~L-~~LL~d~d~~V~K~~I~~~tsl--Ypl~f~~i~~~~~~~~~ 144 (386)
T 3o2t_A 73 ADKSIEVRKFVIGFIEEACKRDI-----ELLLKLIANL-NMLLRDENVNVVKKAILTMTQL--YKVALQWMVKSRVISEL 144 (386)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHH--HHHHHHHHHHC-CCCHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHH--HHHHHHHHhcCCCcchh
Confidence 46678999999998887654332 2234466544 4667899999999999998876 2211 010
Q ss_pred --hHH--HHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 834 --AEI--IDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 834 --~~f--v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
..+ +..+-+.|+...+..+..||+-|.--+-.+-.
T Consensus 145 ~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 145 QEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 111 33344666777788888999888766655543
No 120
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=22.59 E-value=1.6e+02 Score=30.62 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred HhhhccCCCHhHHHHHHHHHhhhhcccccc-cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 802 IDSALHDDVASVRSAACRAIGVISCFPQVS-QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 802 ll~~~~De~~~VRaAA~RALGvlv~~p~L~-~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
+..-..|++.-+|-+|+-++ + +-.. .|. +.....+...+.|+..-||---+|+|..++-
T Consensus 129 i~~W~~s~~~w~rR~ai~~~--l---~~~~~~~~---~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQ--L---MLKEKTNQ---DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTT--T---TCGGGCCH---HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHH--H---HHHHCCCH---HHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 34667899999988887643 2 2222 343 3444545557899999999999999998884
Done!