BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035873
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 92/115 (80%)
Query: 161 LPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVI 220
LPSI+P+ +TI++ PNVGKSSFMN ++RA+VDVQ Y+FTTK+L+VGH D+K +YQ+I
Sbjct: 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQII 81
Query: 221 DTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSI 275
DTPG+LDR FE+ N IEM +ITALAH+ +LF +DIS CG +I +Q LF+SI
Sbjct: 82 DTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI 136
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 142/270 (52%)
Query: 6 FKKITVVPNGKDIVDIILSRTQRQTPTVVHKGYSITRLRRFYMRKVKYTQQNFFEKLSTI 65
F++ V +++D R ++ + +G + + R +V+ + L +
Sbjct: 5 FERXPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKV 64
Query: 66 IDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYC 125
++ P L + FY +L+ VL ++D + A I+ A +I ++ + YV+ ++Y +
Sbjct: 65 LERTPGLSTLPKFYQELVDVLVDRDTFHKAXAGIDWAIRIIRELEERYVERIRYSNDPNE 124
Query: 126 CKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFM 185
L GR+ +V++ I L YL + R+ + LP +D T++I +PNVGKS+ +
Sbjct: 125 IAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLL 184
Query: 186 NKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245
+T A ++ Y FTT+ + VG + Y RYQ+IDTPG+LDRP + N IE +I AL
Sbjct: 185 KALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244
Query: 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSI 275
+L + +++ D S CG+ + +Q LF +
Sbjct: 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEV 274
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 173 ICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFE 231
+ YPN GKSS + +TRA + PY FTT S +G + + R+ + D PGI++ E
Sbjct: 162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221
Query: 232 DHNI 235
+
Sbjct: 222 GKGL 225
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 176 YPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILD 227
+P+VGKS+ ++K+T + + Y FTT G YK + Q++D PGI+D
Sbjct: 80 FPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIID 131
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ VGKSS +N I V V P+ A + +
Sbjct: 17 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 76
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM 238
V T + +IDTPG+++ + +H +E+
Sbjct: 77 VSRTMGGF-TINIIDTPGLVEAGYVNHQALEL 107
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ VGKSS +N I V V P+ A + +
Sbjct: 17 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 76
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM 238
V T + +IDTPG+++ + +H +E+
Sbjct: 77 VSRTMGGFT-INIIDTPGLVEAGYVNHQALEL 107
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ VGKSS +N I V V P+ A + +
Sbjct: 16 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 75
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM 238
V T + +IDTPG+++ + +H +E+
Sbjct: 76 VSRTMGGFT-INIIDTPGLVEAGYVNHQALEL 106
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ VGKSS +N I V V P+ A + +
Sbjct: 17 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 76
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM 238
V T + +IDTPG+++ + +H +E+
Sbjct: 77 VSRTMGGFT-INIIDTPGLVEAGYVNHQALEL 107
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 141 VKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADV----DVQ 196
+ +I P+ + Q + R + P LI PNVGKS+ +N++ + ++ D
Sbjct: 93 LNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP 152
Query: 197 PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLD 256
+ + + VG +++DTPGIL FED + ++T ++ +++ D
Sbjct: 153 GITTSQQWVKVGK------ELELLDTPGILWPKFEDELVGLRLAVT--GAIKDSIINLQD 204
Query: 257 IS 258
++
Sbjct: 205 VA 206
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 TILICWYPNVGKSSFMNK-ITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228
T+LI PNVGKS+ NK + + V+ T+ ++ ++++DT G+ D
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62
Query: 229 PFEDHNII-EMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269
P +II + L +R A L + G G + ++
Sbjct: 63 P---QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDES 101
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 171 ILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
++I PNVGKS+ +N++ D V TT+ + + + ++++DT G+
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS-- 303
Query: 230 FEDHNIIEMCSIT-ALAHLRSA--VLFFLDIS 258
E ++++E I L + A VLF LD S
Sbjct: 304 -ETNDLVERLGIERTLQEIEKADIVLFVLDAS 334
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 151 LEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGH 209
LE R++ RLP R I++ NVGKSSFMN + +V V YA TT
Sbjct: 18 LEDPRRYTMRLPDAG-FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPV--- 73
Query: 210 TDYKYLRYQ------VIDTPGILD 227
YK + ++DTPG+ D
Sbjct: 74 --YKSMELHPIGPVTLVDTPGLDD 95
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTP 223
I + PNVGKS+F + T DV++ Y FTT VG T Y + D P
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVT------YAITDHP 49
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 151 LEQIRQHMARLPSIDPNTRTILICWY--PNVGKSSFMNKITRAD-VDVQPYAFTTKSLFV 207
L+ + +H +P N I C PNVGKSS +N + + V V A TT+
Sbjct: 176 LDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD 235
Query: 208 GHTDYKYLRYQVIDTPGI 225
Y + ++DT G+
Sbjct: 236 TSFTYNQQEFVIVDTAGM 253
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 171 ILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPG--ILD 227
+ I PNVGKS+ N+I + V+ T+ ++ + +IDT G I D
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ 268
PF + ++ +A + V+ F+ ++G G + A +
Sbjct: 86 EPF----LAQIRQQAEIAMDEADVIIFM-VNGREGVTAADE 121
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 171 ILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
+ I PNVGKSS +N +++D V TT+ + + QV+DT GI +
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286
Query: 230 FEDHNI-IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ 268
+ I +E A +A L L I + G++ Q
Sbjct: 287 DQVEKIGVERSRQAA----NTADLVLLTIDAATGWTTGDQ 322
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 151 LEQIRQHMARLPSIDPNTRTILIC--WYPNVGKSSFMNK-ITRADVDVQPYAFTTKSLFV 207
L+ + +H +P N I C PNVGKSS +N + V V A TT+
Sbjct: 156 LDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVD 215
Query: 208 GHTDYKYLRYQVIDTPG 224
Y + ++DT G
Sbjct: 216 TSFTYNQQEFVIVDTAG 232
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 171 ILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPG--ILD 227
+ I PNVGKS+ N+I + V+ T+ ++ + +IDT G I D
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ 268
PF + ++ +A + V+ F ++G G + A +
Sbjct: 66 EPF----LAQIRQQAEIAXDEADVIIFX-VNGREGVTAADE 101
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 171 ILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVI--DTPGILD 227
+ I PNVGKS+ +N + V + P A TT+ +G + Q+I DTPGI +
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-EAQIIFLDTPGIYE 70
Query: 228 RPFED---HNIIEMCSITALAHLRSAVLFFLDISGSCGY 263
D H+++E+ A L A + I + G+
Sbjct: 71 PKKSDVLGHSMVEI----AKQSLEEADVILFMIDATEGW 105
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 171 ILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVI--DTPGILD 227
+ I PNVGKS+ +N + V + P A TT+ +G + Q+I DTPGI +
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-EAQIIFLDTPGIYE 71
Query: 228 RPFED---HNIIEMCSITALAHLRSAVLFFLDISGSCGY 263
D H+++E+ A L A + I + G+
Sbjct: 72 PKKSDVLGHSMVEI----AKQSLEEADVILFMIDATEGW 106
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPY-AFTTKSLFVG-HTDYKYLRYQVIDTPGI 225
I I PNVGKS+ +NK+ + + A TT+ VG HT+ Y + +DTPG+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY-QAIYVDTPGL 63
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPY-AFTTKSLFVG-HTDYKYLRYQVIDTPGI 225
I I PNVGKS+ +NK+ + + A TT+ VG HT+ Y + +DTPG+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY-QAIYVDTPGL 66
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 171 ILICWYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
++I PN GKSS +N + R V A TT+ + H + +IDT G+ +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 69
Query: 230 FEDHNIIEMCSIT-ALAHLRSA--VLFFLD 256
E +E I A + A VLF +D
Sbjct: 70 DE----VERIGIERAWQEIEQADRVLFMVD 95
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
+T+ + PNVGK++ N +T V + T G +Y+ + V+D PGI
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 171 ILICWYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
++I PN GKSS +N + R V A TT+ + H + +IDT G+ +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66
Query: 230 FEDHNIIEMCSIT-ALAHLRSA--VLFFLD 256
E +E I A + A VLF +D
Sbjct: 67 DE----VERIGIERAWQEIEQADRVLFMVD 92
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG 208
+ I PNVGKS+ N +TRA+ Y F T VG
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG 208
+ I PNVGKS+ N +TRA+ Y F T VG
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 173 ICWYPNVGKSSFMNKITRADVDVQPYAFTT 202
I PNVGKS+ N +T+A ++ Y F T
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCT 36
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 171 ILICWYPNVGKSSFMNKI--TRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI--- 225
++I PNVGKSS N++ R+ V V T+ L G + R+ ++DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 226 ----------LDRPFEDHNIIEMCSITALAHLRSA 250
+DR ED ++ + ++ A L A
Sbjct: 63 DKWEKKIQEKVDRALEDAEVV-LFAVDGRAELTQA 96
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 171 ILICWYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
++I PN GKSS +N + R V A TT+ + H +IDT G+
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL 62
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 171 ILICWYPNVGKSSFMNKIT---RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL 226
+LI PN GKS+ +NK+ + V QP F K ++DTPGIL
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVK-----ILDTPGIL 155
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 171 ILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
+ I PNVGKS+ +N + V + P TT+ G + +DTPG L +P
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG-LHKP 68
Query: 230 ------FEDHNIIEMCSITALAHLRSAVLFFLDI 257
F D + E ALA + +AV++ +D+
Sbjct: 69 MDALGEFMDQEVYE-----ALADV-NAVVWVVDL 96
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 142 KRIGPSLAYLEQIRQHMARLPSIDPNTR----TILICWYPNVGKSSFMNKITRADVDVQP 197
+RI + LE I+ + + SI+ N R +I I Y N GK+S N +T V
Sbjct: 151 RRINKLMKELESIK--IFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT 208
Query: 198 YAFTTKS 204
FTT S
Sbjct: 209 KLFTTMS 215
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 142 KRIGPSLAYLEQIRQHMARLPSIDPNTR----TILICWYPNVGKSSFMNKITRADVDVQP 197
+RI + LE I+ + + SI+ N R +I I Y N GK+S N +T V
Sbjct: 151 RRINKLMKELESIK--IFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT 208
Query: 198 YAFTTKS 204
FTT S
Sbjct: 209 KLFTTMS 215
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 142 KRIGPSLAYLEQIRQHMARLPSIDPNTR----TILICWYPNVGKSSFMNKITRADVDVQP 197
+RI + LE I+ + + SI+ N R +I I Y N GK+S N +T V
Sbjct: 151 RRINKLMKELESIK--IFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT 208
Query: 198 YAFTTKS 204
FTT S
Sbjct: 209 KLFTTMS 215
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFV 207
A ++ + + L D N+ TIL+ VGKSS +N I V + P+ +
Sbjct: 20 ATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM 79
Query: 208 GHTDYKYLRYQVIDTPGILD 227
+IDTPG+++
Sbjct: 80 VSRSRAGFTLNIIDTPGLIE 99
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 153 QIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTD 211
++ + + L D N+ TIL+ VGKSS +N I V + P+
Sbjct: 24 KLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS 83
Query: 212 YKYLRYQVIDTPGILD 227
+IDTPG+++
Sbjct: 84 RAGFTLNIIDTPGLIE 99
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTT 202
I I PNVGKS+F N +T + + + F T
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCT 56
>pdb|2YK0|A Chain A, Structure Of The N-Terminal Nts-Dbl1-Alpha And Cidr-Gamma
Double Domain Of The Pfemp1 Protein From Plasmodium
Falciparum Varo Strain
Length = 790
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 81 DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLL--KYGDSLYCCKSLEVAALGRMC 138
D HVL NK+ Y++ N R+ +K KD V +L + D + CK+ A G+ C
Sbjct: 667 DNFHVLKNKEEYEICNVDDN-CRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKEC 725
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR-YQVIDTPGILD 227
+ + +P+VGKS+ ++ ++ A + Y FTT +G + R + D PG+++
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIE 218
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 177 PNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224
PNVGK+S N +T V + T G YK +ID PG
Sbjct: 14 PNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 177 PNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224
PNVGK+S N +T V + T G YK +ID PG
Sbjct: 14 PNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224
+ + PNVGK+S N +T V + T G YK +ID PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 65 IIDEFPRLDDIHPFYGDLLHVLYNKDHYKLAL--------GQINTARNLISK-----IAK 111
+ + + L +++ G L + +HY+ AL G IN A L++ +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAI---EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 112 DYVKLLKYGDSLYCCKSLEVAALGRMCTVVKRIGPSLA-YLEQIR 155
YV L+Y LYC +S LG + + R+ + A YL+ I
Sbjct: 123 AYVSALQYNPDLYCVRS----DLGNLLKALGRLEEAKACYLKAIE 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,935,465
Number of Sequences: 62578
Number of extensions: 315035
Number of successful extensions: 885
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 55
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)