Query 035873
Match_columns 275
No_of_seqs 330 out of 2826
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1084 Predicted GTPase [Gene 100.0 4.3E-74 9.3E-79 509.9 26.8 274 2-275 1-275 (346)
2 KOG1490 GTP-binding protein CR 100.0 4.6E-68 9.9E-73 490.0 20.6 275 1-275 1-275 (620)
3 COG2262 HflX GTPases [General 99.8 3.1E-20 6.8E-25 170.4 15.9 184 78-270 98-291 (411)
4 TIGR03156 GTP_HflX GTP-binding 99.8 6.5E-19 1.4E-23 163.1 16.0 178 78-261 95-282 (351)
5 PRK11058 GTPase HflX; Provisio 99.8 1.4E-18 3E-23 164.5 15.0 176 78-261 103-290 (426)
6 COG1159 Era GTPase [General fu 99.8 7.2E-19 1.6E-23 155.8 11.2 106 168-274 6-112 (298)
7 PF02421 FeoB_N: Ferrous iron 99.8 3.4E-18 7.4E-23 140.5 11.6 96 170-272 2-98 (156)
8 cd01897 NOG NOG1 is a nucleola 99.8 5.3E-18 1.1E-22 139.8 12.4 105 169-273 1-105 (168)
9 COG1160 Predicted GTPases [Gen 99.7 5.9E-18 1.3E-22 157.5 11.3 104 169-273 4-109 (444)
10 COG1163 DRG Predicted GTPase [ 99.7 7.6E-18 1.6E-22 150.4 11.3 95 166-262 61-155 (365)
11 COG0536 Obg Predicted GTPase [ 99.7 1.1E-18 2.4E-23 156.8 1.7 178 89-272 62-262 (369)
12 PRK12298 obgE GTPase CgtA; Rev 99.7 1.2E-17 2.6E-22 156.6 8.5 167 89-259 62-249 (390)
13 COG0552 FtsY Signal recognitio 99.7 1.4E-17 3.1E-22 149.9 8.6 207 46-275 36-283 (340)
14 KOG1489 Predicted GTP-binding 99.7 1.6E-17 3.5E-22 147.8 8.7 101 169-273 197-300 (366)
15 PRK12297 obgE GTPase CgtA; Rev 99.7 1.1E-17 2.5E-22 157.8 7.0 162 89-264 61-253 (424)
16 PRK12299 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.4E-21 147.2 12.3 167 89-261 61-250 (335)
17 PF01926 MMR_HSR1: 50S ribosom 99.7 2E-16 4.3E-21 123.4 11.3 89 170-259 1-91 (116)
18 PTZ00258 GTP-binding protein; 99.7 2.2E-16 4.7E-21 147.2 13.3 105 167-273 20-148 (390)
19 cd01900 YchF YchF subfamily. 99.7 2.8E-16 6E-21 140.5 12.3 101 171-273 1-125 (274)
20 COG0486 ThdF Predicted GTPase 99.7 5.6E-16 1.2E-20 144.8 13.3 89 167-260 216-309 (454)
21 TIGR02729 Obg_CgtA Obg family 99.7 5.7E-16 1.2E-20 142.4 12.8 177 89-269 60-257 (329)
22 PRK12296 obgE GTPase CgtA; Rev 99.7 4.4E-16 9.5E-21 149.1 12.4 165 89-259 63-248 (500)
23 TIGR00436 era GTP-binding prot 99.7 6.7E-16 1.5E-20 138.2 12.4 92 170-262 2-94 (270)
24 PRK09601 GTP-binding protein Y 99.7 8.4E-16 1.8E-20 141.9 13.2 103 169-273 3-129 (364)
25 PRK09602 translation-associate 99.6 2.8E-15 6.1E-20 140.8 13.1 103 169-273 2-138 (396)
26 cd01899 Ygr210 Ygr210 subfamil 99.6 3.3E-15 7.1E-20 136.5 13.0 101 171-273 1-135 (318)
27 PRK15494 era GTPase Era; Provi 99.6 7.2E-15 1.6E-19 135.7 13.2 96 167-263 51-147 (339)
28 cd01878 HflX HflX subfamily. 99.6 1.4E-14 2.9E-19 123.8 13.8 95 166-261 39-134 (204)
29 cd01896 DRG The developmentall 99.6 8.7E-15 1.9E-19 128.4 11.9 89 170-260 2-90 (233)
30 KOG1191 Mitochondrial GTPase [ 99.6 6E-15 1.3E-19 138.0 11.0 104 167-274 267-375 (531)
31 COG1160 Predicted GTPases [Gen 99.6 6.5E-15 1.4E-19 137.3 10.7 97 167-265 177-278 (444)
32 cd01898 Obg Obg subfamily. Th 99.6 7.5E-15 1.6E-19 121.0 9.9 89 170-260 2-91 (170)
33 TIGR03594 GTPase_EngA ribosome 99.6 1.3E-14 2.9E-19 137.6 12.3 102 170-272 1-103 (429)
34 PRK00089 era GTPase Era; Revie 99.6 1.7E-14 3.7E-19 130.3 12.4 103 168-271 5-108 (292)
35 COG0012 Predicted GTPase, prob 99.6 6.8E-15 1.5E-19 134.5 9.4 90 169-260 3-110 (372)
36 PRK05291 trmE tRNA modificatio 99.6 3.5E-14 7.6E-19 135.7 13.8 89 168-261 215-308 (449)
37 PRK03003 GTP-binding protein D 99.6 3.1E-14 6.6E-19 137.0 13.4 105 167-272 37-142 (472)
38 KOG0410 Predicted GTP binding 99.6 2.9E-14 6.4E-19 127.4 11.9 187 77-269 84-276 (410)
39 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 4.1E-14 8.9E-19 120.6 12.0 102 170-273 2-108 (196)
40 PRK00093 GTP-binding protein D 99.6 3.9E-14 8.4E-19 134.8 12.9 103 169-272 2-105 (435)
41 TIGR00450 mnmE_trmE_thdF tRNA 99.5 8.2E-14 1.8E-18 132.8 14.1 90 167-261 202-296 (442)
42 cd01881 Obg_like The Obg-like 99.5 2.9E-14 6.3E-19 117.8 9.0 87 173-261 1-88 (176)
43 cd01894 EngA1 EngA1 subfamily. 99.5 1.9E-13 4.1E-18 110.6 11.2 91 172-263 1-92 (157)
44 cd04164 trmE TrmE (MnmE, ThdF, 99.5 3.6E-13 7.9E-18 108.7 12.7 92 169-261 2-94 (157)
45 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.8E-13 6.2E-18 122.4 12.4 99 155-258 25-129 (313)
46 COG0370 FeoB Fe2+ transport sy 99.5 1.6E-13 3.4E-18 133.4 11.1 89 169-259 4-93 (653)
47 PRK09518 bifunctional cytidyla 99.5 3.2E-13 6.9E-18 135.9 13.7 94 167-261 274-368 (712)
48 KOG1486 GTP-binding protein DR 99.5 2.1E-14 4.5E-19 124.4 3.6 94 166-261 60-153 (364)
49 cd04163 Era Era subfamily. Er 99.5 7.1E-13 1.5E-17 107.4 12.5 99 168-267 3-102 (168)
50 KOG1423 Ras-like GTPase ERA [C 99.5 3E-13 6.4E-18 120.2 10.6 93 166-259 70-167 (379)
51 cd01895 EngA2 EngA2 subfamily. 99.5 1.1E-12 2.3E-17 107.5 12.9 95 168-264 2-101 (174)
52 KOG1491 Predicted GTP-binding 99.4 4.4E-13 9.6E-18 120.5 10.2 93 167-261 19-128 (391)
53 PRK03003 GTP-binding protein D 99.4 8.4E-13 1.8E-17 127.1 12.8 95 167-262 210-308 (472)
54 cd04171 SelB SelB subfamily. 99.4 9.7E-13 2.1E-17 107.3 11.4 83 170-261 2-88 (164)
55 TIGR00092 GTP-binding protein 99.4 8.3E-13 1.8E-17 122.1 11.8 89 169-259 3-109 (368)
56 cd01879 FeoB Ferrous iron tran 99.4 5.2E-13 1.1E-17 108.4 9.3 85 173-260 1-87 (158)
57 cd01853 Toc34_like Toc34-like 99.4 1.2E-12 2.5E-17 116.0 12.0 94 166-259 29-126 (249)
58 cd01861 Rab6 Rab6 subfamily. 99.4 1.3E-12 2.8E-17 106.6 10.9 83 170-261 2-86 (161)
59 COG1161 Predicted GTPases [Gen 99.4 1.7E-13 3.7E-18 125.6 6.1 165 53-232 23-194 (322)
60 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 2.1E-12 4.4E-17 106.0 10.9 84 169-261 1-87 (168)
61 PRK00093 GTP-binding protein D 99.4 2.7E-12 5.8E-17 122.2 13.1 94 167-262 172-270 (435)
62 cd04142 RRP22 RRP22 subfamily. 99.4 2.3E-12 5.1E-17 110.2 11.2 90 170-260 2-93 (198)
63 TIGR03594 GTPase_EngA ribosome 99.4 3.5E-12 7.6E-17 121.1 13.0 93 167-261 171-268 (429)
64 PRK10416 signal recognition pa 99.4 1.6E-12 3.5E-17 118.9 10.2 201 45-274 18-257 (318)
65 PRK09518 bifunctional cytidyla 99.4 3.8E-12 8.2E-17 128.2 13.2 95 167-262 449-547 (712)
66 PF04548 AIG1: AIG1 family; I 99.4 2.6E-12 5.5E-17 111.1 9.4 102 170-272 2-107 (212)
67 PRK09554 feoB ferrous iron tra 99.4 3.4E-12 7.3E-17 128.9 11.3 91 169-259 4-97 (772)
68 TIGR03598 GTPase_YsxC ribosome 99.4 1.1E-11 2.4E-16 103.9 12.4 96 166-264 16-117 (179)
69 PRK09563 rbgA GTPase YlqF; Rev 99.4 6.3E-12 1.4E-16 113.6 11.5 64 166-232 119-183 (287)
70 COG0218 Predicted GTPase [Gene 99.3 1E-11 2.2E-16 105.0 11.1 105 167-274 23-133 (200)
71 TIGR03596 GTPase_YlqF ribosome 99.3 1.1E-11 2.4E-16 111.4 11.7 64 166-232 116-180 (276)
72 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 1.3E-11 2.9E-16 101.5 10.9 84 169-261 3-88 (166)
73 smart00175 RAB Rab subfamily o 99.3 1.1E-11 2.3E-16 101.2 10.0 85 170-263 2-88 (164)
74 cd01868 Rab11_like Rab11-like. 99.3 1.7E-11 3.6E-16 100.6 11.2 85 168-261 3-89 (165)
75 cd01866 Rab2 Rab2 subfamily. 99.3 1.7E-11 3.7E-16 101.4 11.0 84 168-260 4-89 (168)
76 PRK00454 engB GTP-binding prot 99.3 3.3E-11 7.1E-16 101.8 12.8 94 166-262 22-121 (196)
77 cd01867 Rab8_Rab10_Rab13_like 99.3 2.1E-11 4.6E-16 100.6 11.2 84 168-260 3-88 (167)
78 cd04160 Arfrp1 Arfrp1 subfamil 99.3 1.5E-11 3.3E-16 101.0 9.9 82 170-260 1-86 (167)
79 cd04166 CysN_ATPS CysN_ATPS su 99.3 1.4E-11 3E-16 106.1 9.9 84 170-262 1-115 (208)
80 cd04157 Arl6 Arl6 subfamily. 99.3 1.4E-11 3.1E-16 100.4 9.5 83 170-262 1-83 (162)
81 cd00154 Rab Rab family. Rab G 99.3 1.7E-11 3.7E-16 98.5 9.6 83 170-261 2-86 (159)
82 cd04178 Nucleostemin_like Nucl 99.3 5.3E-12 1.1E-16 105.8 6.7 57 166-225 115-172 (172)
83 PRK04213 GTP-binding protein; 99.3 1.6E-11 3.5E-16 104.4 9.8 89 167-259 8-102 (201)
84 cd01864 Rab19 Rab19 subfamily. 99.3 3E-11 6.5E-16 99.3 10.9 85 168-261 3-89 (165)
85 cd00881 GTP_translation_factor 99.3 3.5E-11 7.6E-16 100.3 11.4 93 170-271 1-109 (189)
86 cd04119 RJL RJL (RabJ-Like) su 99.3 3.6E-11 7.9E-16 98.2 10.9 83 170-261 2-86 (168)
87 COG3596 Predicted GTPase [Gene 99.3 1.6E-11 3.5E-16 108.1 9.0 97 165-263 36-133 (296)
88 cd04145 M_R_Ras_like M-Ras/R-R 99.3 5E-11 1.1E-15 97.4 11.1 83 169-261 3-87 (164)
89 cd04113 Rab4 Rab4 subfamily. 99.3 5.1E-11 1.1E-15 97.3 10.9 84 170-262 2-87 (161)
90 cd04114 Rab30 Rab30 subfamily. 99.3 5.1E-11 1.1E-15 98.0 10.7 84 168-260 7-92 (169)
91 cd04161 Arl2l1_Arl13_like Arl2 99.3 5.9E-11 1.3E-15 98.4 11.0 80 170-261 1-80 (167)
92 TIGR00437 feoB ferrous iron tr 99.2 2.8E-11 6.2E-16 119.3 10.4 83 175-259 1-84 (591)
93 cd01862 Rab7 Rab7 subfamily. 99.2 7.2E-11 1.6E-15 97.2 11.2 83 170-261 2-86 (172)
94 cd04109 Rab28 Rab28 subfamily. 99.2 6.5E-11 1.4E-15 102.3 10.9 83 170-261 2-87 (215)
95 cd01863 Rab18 Rab18 subfamily. 99.2 7E-11 1.5E-15 96.4 10.4 83 170-261 2-86 (161)
96 cd01889 SelB_euk SelB subfamil 99.2 6.6E-11 1.4E-15 100.3 10.6 83 170-261 2-105 (192)
97 cd01865 Rab3 Rab3 subfamily. 99.2 8.1E-11 1.8E-15 96.9 10.7 83 169-260 2-86 (165)
98 cd00880 Era_like Era (E. coli 99.2 1.3E-10 2.9E-15 92.7 11.5 89 173-263 1-91 (163)
99 cd04158 ARD1 ARD1 subfamily. 99.2 7.7E-11 1.7E-15 97.7 10.3 79 170-260 1-79 (169)
100 cd04136 Rap_like Rap-like subf 99.2 7.6E-11 1.6E-15 96.2 10.1 82 169-260 2-85 (163)
101 KOG1424 Predicted GTP-binding 99.2 1.5E-11 3.3E-16 115.8 6.6 151 79-232 192-376 (562)
102 cd04149 Arf6 Arf6 subfamily. 99.2 1.3E-10 2.8E-15 96.5 11.5 83 167-261 8-90 (168)
103 cd04123 Rab21 Rab21 subfamily. 99.2 1.1E-10 2.5E-15 94.6 11.0 83 170-261 2-86 (162)
104 cd04144 Ras2 Ras2 subfamily. 99.2 8.8E-11 1.9E-15 99.3 10.6 82 170-261 1-84 (190)
105 cd04138 H_N_K_Ras_like H-Ras/N 99.2 1.2E-10 2.5E-15 94.6 10.8 82 169-260 2-85 (162)
106 cd01860 Rab5_related Rab5-rela 99.2 1.3E-10 2.9E-15 94.9 11.2 83 169-260 2-86 (163)
107 cd01851 GBP Guanylate-binding 99.2 9.7E-11 2.1E-15 102.2 10.9 92 166-259 5-103 (224)
108 cd00878 Arf_Arl Arf (ADP-ribos 99.2 1E-10 2.2E-15 95.3 10.3 79 170-260 1-79 (158)
109 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 1.3E-10 2.8E-15 96.9 11.2 81 168-260 15-95 (174)
110 cd00879 Sar1 Sar1 subfamily. 99.2 1.3E-10 2.9E-15 97.7 11.4 82 167-260 18-99 (190)
111 smart00178 SAR Sar1p-like memb 99.2 1.2E-10 2.7E-15 98.1 10.9 82 167-260 16-97 (184)
112 cd04115 Rab33B_Rab33A Rab33B/R 99.2 1.5E-10 3.3E-15 95.8 11.4 85 169-261 3-89 (170)
113 cd01858 NGP_1 NGP-1. Autoanti 99.2 2.4E-11 5.2E-16 99.9 6.4 55 168-225 102-157 (157)
114 cd04154 Arl2 Arl2 subfamily. 99.2 1.4E-10 3E-15 96.4 11.0 82 167-260 13-94 (173)
115 cd01891 TypA_BipA TypA (tyrosi 99.2 1.6E-10 3.5E-15 98.0 11.6 84 169-261 3-102 (194)
116 cd04124 RabL2 RabL2 subfamily. 99.2 1.3E-10 2.8E-15 95.5 10.4 83 170-261 2-86 (161)
117 cd04159 Arl10_like Arl10-like 99.2 1.4E-10 3.1E-15 93.2 10.4 79 171-260 2-80 (159)
118 cd04106 Rab23_lke Rab23-like s 99.2 1.5E-10 3.2E-15 94.4 10.5 83 170-261 2-88 (162)
119 cd04112 Rab26 Rab26 subfamily. 99.2 1.5E-10 3.2E-15 98.0 10.8 82 170-260 2-86 (191)
120 cd01886 EF-G Elongation factor 99.2 1.3E-10 2.9E-15 104.1 10.9 92 170-270 1-110 (270)
121 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 1.7E-10 3.8E-15 95.9 10.9 82 170-260 2-85 (170)
122 cd04122 Rab14 Rab14 subfamily. 99.2 1.9E-10 4.2E-15 94.7 11.0 83 169-261 3-88 (166)
123 cd04127 Rab27A Rab27a subfamil 99.2 1.9E-10 4.1E-15 95.8 11.0 84 168-260 4-99 (180)
124 cd04110 Rab35 Rab35 subfamily. 99.2 1.8E-10 3.9E-15 98.3 10.9 84 168-260 6-91 (199)
125 cd00876 Ras Ras family. The R 99.2 1.9E-10 4.2E-15 93.1 10.6 81 170-260 1-83 (160)
126 cd04150 Arf1_5_like Arf1-Arf5- 99.2 1.9E-10 4E-15 94.6 10.6 79 170-260 2-80 (159)
127 KOG2423 Nucleolar GTPase [Gene 99.2 2.7E-11 6E-16 110.9 6.0 205 11-230 130-367 (572)
128 cd04125 RabA_like RabA-like su 99.2 1.8E-10 3.9E-15 97.0 10.6 83 170-261 2-86 (188)
129 cd04175 Rap1 Rap1 subgroup. T 99.2 2.1E-10 4.5E-15 94.1 10.7 83 169-261 2-86 (164)
130 TIGR00993 3a0901s04IAP86 chlor 99.2 2.7E-10 5.8E-15 111.3 13.0 90 168-258 118-212 (763)
131 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.7E-10 3.6E-15 95.4 10.0 80 171-261 2-81 (164)
132 cd04116 Rab9 Rab9 subfamily. 99.2 2.5E-10 5.4E-15 94.2 10.8 86 167-261 4-91 (170)
133 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 1.7E-10 3.7E-15 98.4 10.1 83 170-261 2-87 (201)
134 cd04151 Arl1 Arl1 subfamily. 99.2 1.8E-10 3.8E-15 94.2 9.7 79 170-260 1-79 (158)
135 cd01890 LepA LepA subfamily. 99.2 2.5E-10 5.4E-15 94.9 10.7 84 170-262 2-105 (179)
136 cd04117 Rab15 Rab15 subfamily. 99.2 3E-10 6.4E-15 93.4 10.8 83 170-261 2-86 (161)
137 smart00173 RAS Ras subfamily o 99.2 2.5E-10 5.5E-15 93.4 10.3 81 170-260 2-84 (164)
138 KOG2484 GTPase [General functi 99.2 6.5E-11 1.4E-15 108.6 7.3 171 53-232 131-314 (435)
139 cd04118 Rab24 Rab24 subfamily. 99.2 2.1E-10 4.5E-15 96.9 10.0 82 170-260 2-86 (193)
140 TIGR00231 small_GTP small GTP- 99.2 2.7E-10 5.8E-15 90.9 10.0 82 169-259 2-85 (161)
141 TIGR01425 SRP54_euk signal rec 99.2 4.5E-10 9.7E-15 106.1 12.9 103 167-274 99-237 (429)
142 cd04111 Rab39 Rab39 subfamily. 99.1 2.6E-10 5.6E-15 98.4 10.3 83 169-260 3-88 (211)
143 PF06858 NOG1: Nucleolar GTP-b 99.1 4.7E-11 1E-15 80.8 4.2 41 235-275 1-41 (58)
144 cd01884 EF_Tu EF-Tu subfamily. 99.1 3.3E-10 7.1E-15 96.8 10.2 95 169-272 3-113 (195)
145 smart00177 ARF ARF-like small 99.1 5.3E-10 1.2E-14 93.4 11.2 82 168-261 13-94 (175)
146 cd01855 YqeH YqeH. YqeH is an 99.1 6.4E-11 1.4E-15 100.3 5.7 55 168-225 127-190 (190)
147 PLN03110 Rab GTPase; Provision 99.1 3.6E-10 7.8E-15 97.8 10.5 87 167-262 11-99 (216)
148 cd04155 Arl3 Arl3 subfamily. 99.1 4.7E-10 1E-14 92.7 10.7 82 167-260 13-94 (173)
149 KOG2485 Conserved ATP/GTP bind 99.1 1.8E-10 3.9E-15 103.0 8.6 76 166-241 141-222 (335)
150 cd04170 EF-G_bact Elongation f 99.1 5.8E-10 1.3E-14 99.6 12.0 92 170-270 1-110 (268)
151 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 4.8E-10 1E-14 94.3 10.7 83 168-260 3-88 (183)
152 cd04146 RERG_RasL11_like RERG/ 99.1 3.6E-10 7.8E-15 92.9 9.7 84 170-262 1-86 (165)
153 cd01849 YlqF_related_GTPase Yl 99.1 1.2E-10 2.5E-15 95.6 6.8 56 167-225 99-155 (155)
154 cd04147 Ras_dva Ras-dva subfam 99.1 3.8E-10 8.3E-15 96.1 10.0 82 170-261 1-84 (198)
155 cd04176 Rap2 Rap2 subgroup. T 99.1 4.4E-10 9.5E-15 92.0 10.0 82 169-260 2-85 (163)
156 TIGR00487 IF-2 translation ini 99.1 4.5E-10 9.7E-15 110.5 11.6 97 165-270 84-181 (587)
157 PTZ00133 ADP-ribosylation fact 99.1 6E-10 1.3E-14 93.8 10.8 81 168-260 17-97 (182)
158 PTZ00369 Ras-like protein; Pro 99.1 5.7E-10 1.2E-14 94.3 10.7 84 168-261 5-90 (189)
159 cd04177 RSR1 RSR1 subgroup. R 99.1 4.9E-10 1.1E-14 92.5 10.1 90 169-270 2-93 (168)
160 cd04120 Rab12 Rab12 subfamily. 99.1 5.5E-10 1.2E-14 95.9 10.6 85 170-263 2-88 (202)
161 PLN00223 ADP-ribosylation fact 99.1 8.9E-10 1.9E-14 92.7 11.6 82 168-261 17-98 (181)
162 cd04140 ARHI_like ARHI subfami 99.1 6.6E-10 1.4E-14 91.5 10.5 83 169-261 2-86 (165)
163 PF00350 Dynamin_N: Dynamin fa 99.1 3.6E-10 7.8E-15 93.2 8.8 89 171-264 1-145 (168)
164 PLN03118 Rab family protein; P 99.1 6.4E-10 1.4E-14 95.7 10.6 84 167-260 13-98 (211)
165 PLN03108 Rab family protein; P 99.1 6.3E-10 1.4E-14 95.9 10.3 85 168-261 6-92 (210)
166 cd01892 Miro2 Miro2 subfamily. 99.1 5.7E-10 1.2E-14 92.7 9.5 85 167-260 3-90 (169)
167 cd04137 RheB Rheb (Ras Homolog 99.1 9.4E-10 2E-14 91.7 10.9 82 169-260 2-85 (180)
168 cd04169 RF3 RF3 subfamily. Pe 99.1 1.3E-09 2.9E-14 97.5 12.3 84 169-261 3-108 (267)
169 PRK05306 infB translation init 99.1 7.1E-10 1.5E-14 111.9 11.7 97 165-270 287-383 (787)
170 cd01876 YihA_EngB The YihA (En 99.1 5.8E-10 1.3E-14 90.5 9.1 88 171-261 2-95 (170)
171 PRK15467 ethanolamine utilizat 99.1 5.2E-10 1.1E-14 92.2 8.8 76 170-261 3-78 (158)
172 cd04143 Rhes_like Rhes_like su 99.1 7.7E-10 1.7E-14 97.9 10.4 90 170-271 2-93 (247)
173 cd04139 RalA_RalB RalA/RalB su 99.1 1.1E-09 2.5E-14 89.0 10.7 81 170-260 2-84 (164)
174 cd04101 RabL4 RabL4 (Rab-like4 99.1 1.4E-09 2.9E-14 89.0 10.9 82 170-260 2-88 (164)
175 cd04156 ARLTS1 ARLTS1 subfamil 99.1 1.2E-09 2.6E-14 89.0 10.3 79 170-260 1-80 (160)
176 cd04121 Rab40 Rab40 subfamily. 99.1 1.5E-09 3.2E-14 92.3 11.2 86 168-262 6-93 (189)
177 CHL00189 infB translation init 99.1 1.4E-09 3.1E-14 109.0 12.6 97 166-271 242-342 (742)
178 cd04168 TetM_like Tet(M)-like 99.1 1.3E-09 2.8E-14 95.9 11.0 93 170-271 1-111 (237)
179 cd00877 Ran Ran (Ras-related n 99.1 8.6E-10 1.9E-14 91.3 9.2 80 170-260 2-85 (166)
180 PRK12317 elongation factor 1-a 99.1 7.2E-10 1.6E-14 105.4 9.9 83 168-259 6-119 (425)
181 smart00053 DYNc Dynamin, GTPas 99.1 2.2E-09 4.7E-14 94.5 12.0 95 167-261 25-176 (240)
182 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 1.5E-09 3.3E-14 90.4 10.6 85 169-263 3-89 (172)
183 cd01874 Cdc42 Cdc42 subfamily. 99.0 1.1E-09 2.4E-14 91.5 9.7 83 169-261 2-86 (175)
184 PF00009 GTP_EFTU: Elongation 99.0 6.6E-10 1.4E-14 93.9 8.3 97 168-273 3-119 (188)
185 cd04132 Rho4_like Rho4-like su 99.0 1.1E-09 2.3E-14 92.0 9.3 82 170-261 2-86 (187)
186 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 5.5E-10 1.2E-14 90.3 7.0 55 170-227 85-140 (141)
187 KOG0084 GTPase Rab1/YPT1, smal 99.0 1.4E-09 3E-14 91.3 9.3 97 167-274 8-106 (205)
188 cd04128 Spg1 Spg1p. Spg1p (se 99.0 1.4E-09 2.9E-14 91.7 9.4 84 170-262 2-87 (182)
189 TIGR02528 EutP ethanolamine ut 99.0 1.3E-09 2.7E-14 87.4 8.5 77 170-263 2-78 (142)
190 TIGR00475 selB selenocysteine- 99.0 2.1E-09 4.5E-14 106.0 11.8 94 170-272 2-98 (581)
191 cd04102 RabL3 RabL3 (Rab-like3 99.0 2.4E-09 5.1E-14 92.0 10.7 84 170-262 2-92 (202)
192 KOG1487 GTP-binding protein DR 99.0 1.8E-10 4E-15 100.5 3.7 94 168-263 59-152 (358)
193 PLN03071 GTP-binding nuclear p 99.0 2.1E-09 4.6E-14 93.3 10.4 88 166-262 11-100 (219)
194 TIGR00491 aIF-2 translation in 99.0 2.3E-09 4.9E-14 105.5 11.7 96 167-271 3-116 (590)
195 cd04105 SR_beta Signal recogni 99.0 2.9E-09 6.4E-14 91.4 10.9 81 169-260 1-85 (203)
196 cd04148 RGK RGK subfamily. Th 99.0 2.4E-09 5.2E-14 93.1 10.3 83 170-262 2-87 (221)
197 CHL00071 tufA elongation facto 99.0 2.4E-09 5.2E-14 101.4 11.1 97 167-272 11-123 (409)
198 TIGR00484 EF-G translation elo 99.0 2.4E-09 5.3E-14 107.6 11.7 95 167-270 9-121 (689)
199 smart00174 RHO Rho (Ras homolo 99.0 1.4E-09 3.1E-14 89.9 8.4 80 171-260 1-82 (174)
200 PRK09866 hypothetical protein; 99.0 4.7E-09 1E-13 102.5 12.8 35 169-203 70-105 (741)
201 cd01856 YlqF YlqF. Proteins o 99.0 8.6E-10 1.9E-14 92.0 6.8 58 166-226 113-171 (171)
202 PF08477 Miro: Miro-like prote 99.0 6.2E-10 1.3E-14 86.5 5.5 83 170-261 1-87 (119)
203 cd04126 Rab20 Rab20 subfamily. 99.0 2.7E-09 5.8E-14 92.9 10.0 80 170-261 2-81 (220)
204 cd00157 Rho Rho (Ras homology) 99.0 2.8E-09 6E-14 87.6 9.6 81 170-260 2-84 (171)
205 cd01893 Miro1 Miro1 subfamily. 99.0 2.1E-09 4.6E-14 88.6 8.9 80 170-260 2-83 (166)
206 PRK14974 cell division protein 99.0 1.9E-09 4.1E-14 99.3 9.4 103 167-274 139-277 (336)
207 cd04131 Rnd Rnd subfamily. Th 99.0 3.7E-09 7.9E-14 88.8 10.0 84 169-262 2-87 (178)
208 KOG0095 GTPase Rab30, small G 99.0 4.6E-09 9.9E-14 84.5 9.9 96 168-274 7-104 (213)
209 PRK12739 elongation factor G; 99.0 3.1E-09 6.7E-14 106.9 10.8 95 167-270 7-119 (691)
210 TIGR03597 GTPase_YqeH ribosome 99.0 9E-10 2E-14 102.6 6.5 57 169-228 155-217 (360)
211 cd01883 EF1_alpha Eukaryotic e 99.0 6.2E-09 1.4E-13 90.3 11.3 82 170-260 1-113 (219)
212 PF00025 Arf: ADP-ribosylation 99.0 1.2E-09 2.6E-14 91.5 6.4 83 166-260 12-94 (175)
213 KOG0073 GTP-binding ADP-ribosy 98.9 1.1E-08 2.4E-13 83.5 11.4 80 168-260 16-96 (185)
214 PRK00007 elongation factor G; 98.9 4.4E-09 9.6E-14 105.8 11.2 96 167-271 9-122 (693)
215 cd01871 Rac1_like Rac1-like su 98.9 4.8E-09 1E-13 87.6 9.4 82 170-261 3-86 (174)
216 cd01850 CDC_Septin CDC/Septin. 98.9 3.3E-09 7.1E-14 95.4 8.5 62 168-229 4-77 (276)
217 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 6.9E-09 1.5E-13 90.4 10.1 82 169-260 2-85 (222)
218 PLN03127 Elongation factor Tu; 98.9 9E-09 2E-13 98.5 11.7 97 167-272 60-172 (447)
219 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 9.5E-09 2.1E-13 86.8 10.5 84 168-261 5-90 (182)
220 cd01859 MJ1464 MJ1464. This f 98.9 3.1E-09 6.7E-14 87.0 7.2 56 167-225 100-156 (156)
221 cd04130 Wrch_1 Wrch-1 subfamil 98.9 3.8E-09 8.2E-14 87.7 7.7 82 170-261 2-85 (173)
222 PRK13796 GTPase YqeH; Provisio 98.9 1.3E-09 2.9E-14 101.6 5.5 57 169-228 161-223 (365)
223 cd04135 Tc10 TC10 subfamily. 98.9 3.5E-09 7.6E-14 87.5 7.3 82 170-261 2-85 (174)
224 PRK12735 elongation factor Tu; 98.9 9.6E-09 2.1E-13 96.9 11.0 97 167-272 11-123 (396)
225 cd01870 RhoA_like RhoA-like su 98.9 5.9E-09 1.3E-13 86.2 8.3 83 169-261 2-86 (175)
226 PRK04004 translation initiatio 98.9 1.2E-08 2.6E-13 100.6 11.6 98 165-271 3-118 (586)
227 PF00071 Ras: Ras family; Int 98.9 7.6E-09 1.7E-13 84.4 8.5 82 170-260 1-84 (162)
228 cd04167 Snu114p Snu114p subfam 98.9 1.2E-08 2.6E-13 88.0 10.2 84 170-262 2-109 (213)
229 cd00882 Ras_like_GTPase Ras-li 98.9 7.6E-09 1.6E-13 81.3 8.1 81 173-262 1-83 (157)
230 PLN00023 GTP-binding protein; 98.9 1.1E-08 2.5E-13 93.2 10.2 85 167-260 20-119 (334)
231 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 1.8E-08 4E-13 88.3 11.0 84 168-261 13-98 (232)
232 PRK00049 elongation factor Tu; 98.9 1.3E-08 2.9E-13 96.0 10.7 97 167-272 11-123 (396)
233 cd04133 Rop_like Rop subfamily 98.9 1.1E-08 2.3E-13 86.0 8.6 84 169-262 2-87 (176)
234 cd04134 Rho3 Rho3 subfamily. 98.9 9.2E-09 2E-13 86.9 8.1 83 170-262 2-86 (189)
235 cd01885 EF2 EF2 (for archaea a 98.9 2.5E-08 5.3E-13 87.0 11.0 92 170-270 2-119 (222)
236 PRK12736 elongation factor Tu; 98.8 2.5E-08 5.3E-13 94.1 11.6 97 167-272 11-123 (394)
237 PRK05506 bifunctional sulfate 98.8 1.5E-08 3.2E-13 101.1 10.5 87 168-263 24-143 (632)
238 cd04104 p47_IIGP_like p47 (47- 98.8 1.1E-08 2.5E-13 87.2 8.5 83 169-257 2-90 (197)
239 TIGR00483 EF-1_alpha translati 98.8 2.2E-08 4.8E-13 95.3 11.4 85 167-260 6-121 (426)
240 cd01875 RhoG RhoG subfamily. 98.8 2.1E-08 4.6E-13 84.9 9.9 84 169-262 4-89 (191)
241 PRK10867 signal recognition pa 98.8 8E-09 1.7E-13 98.1 7.8 103 167-274 99-238 (433)
242 TIGR00064 ftsY signal recognit 98.8 3.3E-09 7.2E-14 95.2 5.0 106 167-274 71-215 (272)
243 TIGR01394 TypA_BipA GTP-bindin 98.8 3.5E-08 7.5E-13 97.5 12.0 84 169-261 2-101 (594)
244 PF10662 PduV-EutP: Ethanolami 98.8 2.1E-08 4.6E-13 81.1 8.6 76 169-261 2-77 (143)
245 cd01888 eIF2_gamma eIF2-gamma 98.8 3.9E-08 8.5E-13 84.3 10.8 80 170-260 2-119 (203)
246 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.8 3E-08 6.4E-13 83.3 9.4 96 167-273 21-118 (221)
247 PRK10218 GTP-binding protein; 98.8 4E-08 8.6E-13 97.1 11.9 85 168-261 5-105 (607)
248 PLN03126 Elongation factor Tu; 98.8 4.6E-08 1E-12 94.2 12.0 97 167-272 80-192 (478)
249 TIGR00485 EF-Tu translation el 98.8 3.4E-08 7.3E-13 93.2 10.8 96 168-272 12-123 (394)
250 TIGR00503 prfC peptide chain r 98.8 4.8E-08 1E-12 95.2 12.1 87 167-262 10-118 (527)
251 PRK10512 selenocysteinyl-tRNA- 98.8 4.7E-08 1E-12 96.9 12.1 94 170-272 2-99 (614)
252 TIGR02034 CysN sulfate adenyly 98.8 3.7E-08 8E-13 93.3 10.8 94 170-272 2-128 (406)
253 cd04103 Centaurin_gamma Centau 98.8 5.5E-08 1.2E-12 80.0 10.4 77 170-262 2-80 (158)
254 PRK12289 GTPase RsgA; Reviewed 98.8 9.7E-09 2.1E-13 95.2 6.5 58 170-230 174-239 (352)
255 PRK13351 elongation factor G; 98.8 4.5E-08 9.7E-13 98.6 11.5 95 168-271 8-120 (687)
256 COG0541 Ffh Signal recognition 98.8 1.6E-08 3.5E-13 94.4 7.6 103 167-274 99-237 (451)
257 PRK05124 cysN sulfate adenylyl 98.8 5E-08 1.1E-12 94.1 11.1 87 167-262 26-145 (474)
258 smart00176 RAN Ran (Ras-relate 98.8 4.9E-08 1.1E-12 83.7 9.7 79 174-261 1-81 (200)
259 PRK00741 prfC peptide chain re 98.8 8.5E-08 1.8E-12 93.5 12.4 87 167-262 9-117 (526)
260 KOG0079 GTP-binding protein H- 98.8 3.6E-08 7.9E-13 79.3 8.0 96 169-275 9-106 (198)
261 TIGR00157 ribosome small subun 98.7 3.1E-08 6.7E-13 87.6 8.3 59 170-232 122-188 (245)
262 PRK00771 signal recognition pa 98.7 1.1E-08 2.4E-13 97.3 5.8 103 167-274 94-230 (437)
263 PTZ00132 GTP-binding nuclear p 98.7 9.4E-08 2E-12 82.3 11.0 84 167-261 8-95 (215)
264 KOG0078 GTP-binding protein SE 98.7 7.7E-08 1.7E-12 81.7 10.0 97 167-274 11-109 (207)
265 PRK12288 GTPase RsgA; Reviewed 98.7 1.9E-08 4.1E-13 93.2 6.9 59 170-231 207-273 (347)
266 cd01882 BMS1 Bms1. Bms1 is an 98.7 6.4E-08 1.4E-12 84.5 9.8 90 166-272 37-128 (225)
267 TIGR01393 lepA GTP-binding pro 98.7 9.2E-08 2E-12 94.6 12.0 84 169-261 4-107 (595)
268 KOG0092 GTPase Rab5/YPT51 and 98.7 2.9E-08 6.2E-13 83.1 6.7 96 167-273 4-101 (200)
269 KOG0080 GTPase Rab18, small G 98.7 7.7E-08 1.7E-12 78.5 8.9 84 168-260 11-96 (209)
270 PF03193 DUF258: Protein of un 98.7 2.3E-08 5E-13 82.6 5.3 60 169-231 36-103 (161)
271 KOG0074 GTP-binding ADP-ribosy 98.7 8.7E-08 1.9E-12 76.6 8.2 84 166-262 15-100 (185)
272 PF09439 SRPRB: Signal recogni 98.7 1.9E-08 4E-13 84.8 4.6 80 168-258 3-86 (181)
273 KOG0780 Signal recognition par 98.7 4.2E-08 9E-13 90.2 7.1 105 165-274 98-238 (483)
274 KOG0098 GTPase Rab2, small G p 98.7 1.3E-07 2.9E-12 78.8 9.3 92 167-269 5-100 (216)
275 TIGR03680 eif2g_arch translati 98.7 1.3E-07 2.9E-12 89.5 10.6 96 168-272 4-129 (406)
276 KOG0781 Signal recognition par 98.7 6.5E-08 1.4E-12 90.9 8.1 197 56-274 278-521 (587)
277 TIGR00959 ffh signal recogniti 98.7 5.3E-08 1.2E-12 92.4 7.7 55 215-274 183-237 (428)
278 COG1100 GTPase SAR1 and relate 98.7 1.5E-07 3.2E-12 80.8 9.8 81 169-259 6-89 (219)
279 KOG0394 Ras-related GTPase [Ge 98.7 4.2E-08 9.1E-13 81.6 6.0 86 167-261 8-95 (210)
280 TIGR00490 aEF-2 translation el 98.6 1.2E-07 2.6E-12 95.9 10.2 95 167-270 18-132 (720)
281 cd04129 Rho2 Rho2 subfamily. 98.6 1.7E-07 3.7E-12 79.0 9.5 81 170-260 3-85 (187)
282 PRK05433 GTP-binding protein L 98.6 2.7E-07 5.9E-12 91.4 12.3 86 168-262 7-112 (600)
283 TIGR02836 spore_IV_A stage IV 98.6 1.4E-07 3E-12 88.2 9.4 91 167-258 16-156 (492)
284 KOG0070 GTP-binding ADP-ribosy 98.6 3.1E-08 6.8E-13 82.4 4.2 83 167-261 16-98 (181)
285 cd04165 GTPBP1_like GTPBP1-lik 98.6 2.7E-07 5.8E-12 80.5 10.3 95 170-272 1-134 (224)
286 KOG0075 GTP-binding ADP-ribosy 98.6 3.7E-08 8.1E-13 79.1 4.2 82 169-261 21-102 (186)
287 PRK14723 flhF flagellar biosyn 98.6 1.3E-07 2.7E-12 95.0 8.8 101 168-273 185-318 (767)
288 PTZ00141 elongation factor 1- 98.6 4.6E-07 9.9E-12 86.8 11.5 85 168-261 7-122 (446)
289 PTZ00416 elongation factor 2; 98.6 3.4E-07 7.4E-12 94.0 10.7 96 167-271 18-139 (836)
290 KOG0087 GTPase Rab11/YPT3, sma 98.6 2.3E-07 4.9E-12 78.9 7.6 96 167-274 13-111 (222)
291 PRK00098 GTPase RsgA; Reviewed 98.5 3.2E-07 7E-12 83.4 8.6 58 169-229 165-230 (298)
292 PRK12740 elongation factor G; 98.5 5.6E-07 1.2E-11 90.4 11.1 79 174-261 1-97 (668)
293 KOG0086 GTPase Rab4, small G p 98.5 3.7E-07 8E-12 73.9 7.8 88 168-264 9-98 (214)
294 PF04670 Gtr1_RagA: Gtr1/RagA 98.5 2.6E-07 5.5E-12 81.0 7.1 86 170-259 1-88 (232)
295 PF00448 SRP54: SRP54-type pro 98.5 2.6E-08 5.5E-13 85.2 0.6 100 169-273 2-137 (196)
296 COG2229 Predicted GTPase [Gene 98.5 1.1E-06 2.4E-11 73.3 10.2 98 167-273 9-117 (187)
297 PRK04000 translation initiatio 98.5 7.5E-07 1.6E-11 84.5 10.5 97 167-272 8-134 (411)
298 PF00735 Septin: Septin; Inte 98.5 1E-06 2.3E-11 79.4 10.8 92 169-260 5-126 (281)
299 PRK07560 elongation factor EF- 98.5 9.3E-07 2E-11 89.7 11.5 96 167-271 19-134 (731)
300 PRK12724 flagellar biosynthesi 98.5 1.3E-06 2.8E-11 82.4 11.3 103 168-273 223-357 (432)
301 KOG1547 Septin CDC10 and relat 98.5 1.4E-06 2.9E-11 75.8 10.2 96 168-264 46-172 (336)
302 PRK06995 flhF flagellar biosyn 98.5 1.3E-06 2.7E-11 84.1 10.9 43 47-91 168-210 (484)
303 PRK11889 flhF flagellar biosyn 98.4 2.9E-07 6.2E-12 86.0 5.6 102 167-274 240-376 (436)
304 PRK12723 flagellar biosynthesi 98.4 1.2E-06 2.5E-11 82.4 9.4 23 167-189 173-195 (388)
305 PLN00116 translation elongatio 98.4 1.6E-06 3.4E-11 89.2 11.1 92 167-267 18-141 (843)
306 cd01873 RhoBTB RhoBTB subfamil 98.4 9E-07 2E-11 75.5 7.7 83 169-262 3-102 (195)
307 cd01854 YjeQ_engC YjeQ/EngC. 98.4 5.5E-07 1.2E-11 81.4 6.7 58 169-229 162-227 (287)
308 COG5192 BMS1 GTP-binding prote 98.4 2.7E-06 5.9E-11 81.6 10.9 135 116-272 18-158 (1077)
309 COG1162 Predicted GTPases [Gen 98.4 7.6E-07 1.7E-11 80.2 6.5 58 170-230 166-231 (301)
310 KOG0093 GTPase Rab3, small G p 98.3 2.3E-06 4.9E-11 69.0 8.0 92 168-268 21-114 (193)
311 KOG0091 GTPase Rab39, small G 98.3 1.3E-06 2.8E-11 71.6 5.8 86 168-262 8-96 (213)
312 KOG2486 Predicted GTPase [Gene 98.3 5.6E-06 1.2E-10 73.4 10.1 92 166-263 134-235 (320)
313 PF05049 IIGP: Interferon-indu 98.2 3.7E-06 8E-11 78.3 7.2 85 168-257 35-124 (376)
314 PLN00043 elongation factor 1-a 98.2 1.2E-05 2.6E-10 77.1 10.9 84 168-260 7-121 (447)
315 KOG0090 Signal recognition par 98.2 2.7E-06 5.9E-11 72.6 5.5 80 169-259 39-120 (238)
316 KOG0071 GTP-binding ADP-ribosy 98.2 1.1E-05 2.4E-10 64.6 8.3 80 168-260 17-97 (180)
317 KOG0076 GTP-binding ADP-ribosy 98.2 6E-06 1.3E-10 68.3 6.9 85 168-261 17-106 (197)
318 KOG0097 GTPase Rab14, small G 98.2 1.1E-05 2.4E-10 64.5 8.2 92 167-268 10-104 (215)
319 COG0532 InfB Translation initi 98.1 1.7E-05 3.6E-10 76.0 10.3 95 166-273 3-104 (509)
320 PRK14722 flhF flagellar biosyn 98.1 0.0002 4.3E-09 67.0 16.3 24 167-190 136-159 (374)
321 PRK05703 flhF flagellar biosyn 98.1 5.5E-05 1.2E-09 72.1 12.8 22 168-189 221-242 (424)
322 KOG0395 Ras-related GTPase [Ge 98.0 1.3E-05 2.8E-10 68.5 7.2 86 168-263 3-90 (196)
323 COG0480 FusA Translation elong 98.0 2.7E-05 5.9E-10 78.1 10.4 94 167-269 9-124 (697)
324 PRK09435 membrane ATPase/prote 98.0 3E-05 6.5E-10 71.4 9.8 24 166-189 54-77 (332)
325 COG5019 CDC3 Septin family pro 98.0 3.9E-05 8.4E-10 70.6 10.1 95 167-261 22-147 (373)
326 KOG1954 Endocytosis/signaling 98.0 2.6E-05 5.6E-10 71.7 8.6 104 167-270 57-205 (532)
327 KOG0077 Vesicle coat complex C 98.0 2E-05 4.3E-10 64.9 6.8 82 167-260 19-100 (193)
328 PRK14721 flhF flagellar biosyn 98.0 6E-05 1.3E-09 71.5 10.6 25 167-191 190-214 (420)
329 KOG2655 Septin family protein 98.0 6.6E-05 1.4E-09 69.4 10.4 94 167-260 20-142 (366)
330 TIGR00750 lao LAO/AO transport 97.9 7.3E-05 1.6E-09 68.0 10.4 53 132-190 4-56 (300)
331 COG1419 FlhF Flagellar GTP-bin 97.9 0.00042 9E-09 65.0 14.7 23 168-190 203-225 (407)
332 PRK12726 flagellar biosynthesi 97.9 6E-05 1.3E-09 70.4 9.0 23 167-189 205-227 (407)
333 COG5256 TEF1 Translation elong 97.8 5.6E-05 1.2E-09 70.5 7.9 84 168-260 7-121 (428)
334 KOG1532 GTPase XAB1, interacts 97.8 1.5E-05 3.3E-10 70.6 3.5 25 165-189 16-40 (366)
335 PRK13768 GTPase; Provisional 97.8 3.9E-05 8.4E-10 68.2 6.1 21 169-189 3-23 (253)
336 COG4917 EutP Ethanolamine util 97.8 4.2E-05 9.2E-10 60.2 5.3 76 169-260 2-77 (148)
337 cd03112 CobW_like The function 97.8 3.3E-05 7.2E-10 63.6 4.5 22 170-191 2-23 (158)
338 KOG1145 Mitochondrial translat 97.8 0.00019 4E-09 69.2 9.9 87 164-263 149-240 (683)
339 PTZ00327 eukaryotic translatio 97.8 0.00015 3.3E-09 69.7 9.6 25 168-192 34-58 (460)
340 PRK06731 flhF flagellar biosyn 97.7 2.6E-05 5.6E-10 69.9 3.9 103 167-274 74-210 (270)
341 COG4108 PrfC Peptide chain rel 97.7 0.00012 2.5E-09 68.8 8.1 84 169-261 13-118 (528)
342 KOG3883 Ras family small GTPas 97.7 0.00026 5.6E-09 57.7 8.5 87 167-261 8-98 (198)
343 cd03115 SRP The signal recogni 97.6 0.0006 1.3E-08 56.6 10.5 52 214-272 82-135 (173)
344 KOG0072 GTP-binding ADP-ribosy 97.6 2.9E-05 6.4E-10 62.5 2.4 88 167-267 17-105 (182)
345 PRK01889 GTPase RsgA; Reviewed 97.6 7.6E-05 1.6E-09 69.6 5.4 58 169-229 196-261 (356)
346 PRK12727 flagellar biosynthesi 97.6 0.00022 4.7E-09 69.3 8.6 102 167-273 349-482 (559)
347 PF03308 ArgK: ArgK protein; 97.6 0.00013 2.9E-09 64.5 6.3 24 166-189 27-50 (266)
348 KOG0081 GTPase Rab27, small G 97.6 3.8E-05 8.2E-10 62.8 2.6 82 170-260 11-103 (219)
349 PF03029 ATP_bind_1: Conserved 97.6 7.7E-05 1.7E-09 65.7 4.8 17 173-189 1-17 (238)
350 KOG0088 GTPase Rab21, small G 97.6 3E-05 6.6E-10 63.3 1.8 79 168-260 13-98 (218)
351 KOG0462 Elongation factor-type 97.5 0.00025 5.4E-09 68.2 7.7 85 167-260 59-161 (650)
352 COG1217 TypA Predicted membran 97.5 0.00025 5.5E-09 67.1 7.5 85 168-261 5-105 (603)
353 KOG1144 Translation initiation 97.5 0.00024 5.1E-09 70.5 7.3 99 166-273 473-589 (1064)
354 COG1703 ArgK Putative periplas 97.5 0.00082 1.8E-08 60.5 9.8 55 133-189 18-72 (323)
355 KOG0464 Elongation factor G [T 97.5 8.4E-05 1.8E-09 69.3 3.5 94 168-270 37-151 (753)
356 KOG0448 Mitofusin 1 GTPase, in 97.4 0.0011 2.4E-08 65.3 10.7 27 167-193 108-134 (749)
357 KOG0083 GTPase Rab26/Rab37, sm 97.4 8.5E-05 1.9E-09 59.0 2.4 82 172-262 1-85 (192)
358 PF02263 GBP: Guanylate-bindin 97.4 0.00049 1.1E-08 61.4 6.9 104 166-273 19-129 (260)
359 PRK14845 translation initiatio 97.3 0.00073 1.6E-08 70.7 8.6 85 179-272 472-574 (1049)
360 KOG3886 GTP-binding protein [S 97.2 0.00041 8.8E-09 60.3 4.5 84 168-259 4-93 (295)
361 KOG0458 Elongation factor 1 al 97.2 0.00072 1.6E-08 65.5 6.4 83 168-259 177-290 (603)
362 KOG4252 GTP-binding protein [S 97.1 0.0002 4.2E-09 59.8 1.6 97 167-274 19-117 (246)
363 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0017 3.6E-08 47.4 6.3 76 171-266 2-77 (99)
364 KOG3859 Septins (P-loop GTPase 97.1 0.00094 2E-08 59.6 5.6 62 168-229 42-109 (406)
365 KOG2749 mRNA cleavage and poly 97.1 0.0016 3.4E-08 59.9 6.9 26 165-190 100-125 (415)
366 PRK14737 gmk guanylate kinase; 97.0 0.00071 1.5E-08 57.3 4.1 42 167-208 3-45 (186)
367 KOG0468 U5 snRNP-specific prot 97.0 0.0017 3.7E-08 64.0 7.0 97 165-270 125-243 (971)
368 KOG0447 Dynamin-like GTP bindi 97.0 0.0095 2.1E-07 57.7 11.7 29 164-192 304-332 (980)
369 cd03116 MobB Molybdenum is an 96.9 0.00096 2.1E-08 55.1 3.3 22 169-190 2-23 (159)
370 cd00071 GMPK Guanosine monopho 96.8 0.0013 2.7E-08 52.9 3.7 51 171-223 2-54 (137)
371 PRK10751 molybdopterin-guanine 96.8 0.0014 3.1E-08 54.8 3.9 23 167-189 5-27 (173)
372 KOG1673 Ras GTPases [General f 96.8 0.0013 2.8E-08 53.8 3.3 86 168-262 20-107 (205)
373 COG0481 LepA Membrane GTPase L 96.8 0.0032 7E-08 60.0 6.4 81 170-259 11-111 (603)
374 KOG0393 Ras-related small GTPa 96.7 0.00073 1.6E-08 57.6 1.4 84 168-261 4-90 (198)
375 PRK14738 gmk guanylate kinase; 96.7 0.0019 4.2E-08 55.4 3.9 38 167-204 12-50 (206)
376 PF13207 AAA_17: AAA domain; P 96.6 0.0017 3.6E-08 50.3 2.9 21 170-190 1-21 (121)
377 PF05879 RHD3: Root hair defec 96.6 0.0021 4.6E-08 65.4 4.3 78 174-253 1-86 (742)
378 TIGR03263 guanyl_kin guanylate 96.6 0.0026 5.6E-08 52.9 4.2 53 170-224 3-56 (180)
379 COG0194 Gmk Guanylate kinase [ 96.5 0.0017 3.6E-08 54.8 2.6 51 168-220 4-54 (191)
380 PRK00300 gmk guanylate kinase; 96.5 0.003 6.6E-08 53.7 4.1 25 168-192 5-29 (205)
381 PF00005 ABC_tran: ABC transpo 96.5 0.0022 4.7E-08 50.7 3.0 24 169-192 12-35 (137)
382 COG0466 Lon ATP-dependent Lon 96.5 0.015 3.4E-07 58.0 9.4 23 167-189 349-371 (782)
383 COG1341 Predicted GTPase or GT 96.5 0.018 3.9E-07 53.9 9.4 24 166-189 71-94 (398)
384 KOG1707 Predicted Ras related/ 96.5 0.0084 1.8E-07 58.4 7.2 82 167-260 8-92 (625)
385 COG5257 GCD11 Translation init 96.4 0.0063 1.4E-07 55.5 5.9 87 168-263 10-125 (415)
386 KOG2203 GTP-binding protein [G 96.4 0.0048 1.1E-07 59.6 5.4 74 166-239 35-112 (772)
387 cd02042 ParA ParA and ParB of 96.4 0.016 3.4E-07 43.7 7.0 66 171-260 2-74 (104)
388 PF13555 AAA_29: P-loop contai 96.4 0.0039 8.4E-08 43.2 3.2 20 170-189 25-44 (62)
389 COG2895 CysN GTPases - Sulfate 96.3 0.013 2.7E-07 54.2 7.1 83 168-259 6-121 (431)
390 PRK09270 nucleoside triphospha 96.3 0.0043 9.3E-08 54.1 4.0 25 166-190 31-55 (229)
391 COG1116 TauB ABC-type nitrate/ 96.2 0.0033 7.1E-08 55.3 2.8 22 170-191 31-52 (248)
392 KOG0461 Selenocysteine-specifi 96.2 0.023 5.1E-07 52.3 8.3 84 168-260 7-106 (522)
393 cd02038 FleN-like FleN is a me 96.2 0.017 3.7E-07 46.3 6.8 69 173-260 5-79 (139)
394 TIGR03348 VI_IcmF type VI secr 96.2 0.01 2.3E-07 63.5 7.0 96 168-265 111-219 (1169)
395 PF13671 AAA_33: AAA domain; P 96.2 0.0041 8.8E-08 49.4 2.9 20 170-189 1-20 (143)
396 TIGR00073 hypB hydrogenase acc 96.2 0.0042 9.2E-08 53.2 3.1 24 167-190 21-44 (207)
397 cd03111 CpaE_like This protein 96.2 0.015 3.2E-07 44.5 5.8 77 174-273 6-90 (106)
398 TIGR03499 FlhF flagellar biosy 96.1 0.019 4E-07 51.9 7.4 24 167-190 193-216 (282)
399 COG1120 FepC ABC-type cobalami 96.1 0.005 1.1E-07 54.8 3.3 23 168-190 28-50 (258)
400 KOG1533 Predicted GTPase [Gene 96.1 0.0088 1.9E-07 52.3 4.6 19 171-189 5-23 (290)
401 cd03243 ABC_MutS_homologs The 96.1 0.028 6E-07 47.9 7.8 22 169-190 30-51 (202)
402 COG1134 TagH ABC-type polysacc 96.0 0.012 2.6E-07 51.6 5.4 25 167-191 52-76 (249)
403 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0058 1.3E-07 52.2 3.3 25 168-192 27-51 (211)
404 cd03222 ABC_RNaseL_inhibitor T 96.0 0.0056 1.2E-07 51.5 3.1 24 169-192 26-49 (177)
405 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.006 1.3E-07 52.4 3.4 25 168-192 30-54 (218)
406 cd02019 NK Nucleoside/nucleoti 96.0 0.0059 1.3E-07 43.0 2.7 22 170-191 1-22 (69)
407 cd03261 ABC_Org_Solvent_Resist 96.0 0.0061 1.3E-07 53.1 3.4 24 169-192 27-50 (235)
408 PTZ00099 rab6; Provisional 96.0 0.025 5.3E-07 47.3 6.8 45 208-261 20-66 (176)
409 PF13238 AAA_18: AAA domain; P 96.0 0.0056 1.2E-07 47.4 2.8 21 171-191 1-21 (129)
410 KOG0465 Mitochondrial elongati 96.0 0.0074 1.6E-07 59.0 4.0 94 168-270 39-153 (721)
411 TIGR01166 cbiO cobalt transpor 96.0 0.0065 1.4E-07 51.1 3.4 24 169-192 19-42 (190)
412 TIGR00960 3a0501s02 Type II (G 96.0 0.0064 1.4E-07 52.2 3.3 25 168-192 29-53 (216)
413 COG3276 SelB Selenocysteine-sp 96.0 0.029 6.4E-07 53.0 7.9 82 170-262 2-88 (447)
414 TIGR02673 FtsE cell division A 96.0 0.0057 1.2E-07 52.4 3.0 24 169-192 29-52 (214)
415 cd03265 ABC_DrrA DrrA is the A 95.9 0.0058 1.3E-07 52.7 3.0 24 169-192 27-50 (220)
416 TIGR00235 udk uridine kinase. 95.9 0.006 1.3E-07 52.2 3.0 25 166-190 4-28 (207)
417 TIGR03608 L_ocin_972_ABC putat 95.9 0.0061 1.3E-07 51.8 3.0 24 169-192 25-48 (206)
418 PRK07261 topology modulation p 95.9 0.0061 1.3E-07 50.8 2.9 21 170-190 2-22 (171)
419 cd03264 ABC_drug_resistance_li 95.9 0.0058 1.2E-07 52.3 2.8 23 170-192 27-49 (211)
420 PRK05480 uridine/cytidine kina 95.9 0.007 1.5E-07 51.8 3.2 25 166-190 4-28 (209)
421 COG0488 Uup ATPase components 95.9 0.0095 2.1E-07 58.4 4.5 25 168-192 29-53 (530)
422 cd03226 ABC_cobalt_CbiO_domain 95.9 0.0073 1.6E-07 51.5 3.3 24 169-192 27-50 (205)
423 cd03262 ABC_HisP_GlnQ_permease 95.9 0.0076 1.6E-07 51.5 3.4 25 168-192 26-50 (213)
424 COG1136 SalX ABC-type antimicr 95.9 0.0061 1.3E-07 53.2 2.8 23 169-191 32-54 (226)
425 cd03259 ABC_Carb_Solutes_like 95.9 0.0075 1.6E-07 51.6 3.4 24 169-192 27-50 (213)
426 COG0411 LivG ABC-type branched 95.9 0.0019 4.1E-08 56.6 -0.4 24 168-191 30-53 (250)
427 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.0068 1.5E-07 49.0 2.9 24 169-192 27-50 (144)
428 PF05621 TniB: Bacterial TniB 95.9 0.089 1.9E-06 47.8 10.3 80 166-258 59-154 (302)
429 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0067 1.4E-07 52.3 3.0 24 169-192 31-54 (220)
430 KOG4181 Uncharacterized conser 95.9 0.021 4.5E-07 52.6 6.1 28 166-193 186-213 (491)
431 cd03269 ABC_putative_ATPase Th 95.8 0.008 1.7E-07 51.4 3.3 24 169-192 27-50 (210)
432 PF13191 AAA_16: AAA ATPase do 95.8 0.011 2.3E-07 48.9 4.0 24 166-189 22-45 (185)
433 cd03258 ABC_MetN_methionine_tr 95.8 0.007 1.5E-07 52.6 3.0 25 168-192 31-55 (233)
434 smart00382 AAA ATPases associa 95.8 0.0086 1.9E-07 46.0 3.2 23 169-191 3-25 (148)
435 cd03224 ABC_TM1139_LivF_branch 95.8 0.007 1.5E-07 52.1 2.9 25 168-192 26-50 (222)
436 PF00625 Guanylate_kin: Guanyl 95.8 0.0025 5.4E-08 53.5 0.1 37 169-205 3-41 (183)
437 PRK08118 topology modulation p 95.8 0.0073 1.6E-07 50.2 2.9 22 169-190 2-23 (167)
438 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0078 1.7E-07 50.1 3.1 22 168-189 3-24 (188)
439 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.037 8.1E-07 47.1 7.4 21 169-189 29-49 (200)
440 cd03218 ABC_YhbG The ABC trans 95.8 0.0071 1.5E-07 52.5 3.0 24 169-192 27-50 (232)
441 TIGR02211 LolD_lipo_ex lipopro 95.8 0.0082 1.8E-07 51.7 3.3 25 168-192 31-55 (221)
442 cd03260 ABC_PstB_phosphate_tra 95.8 0.0081 1.8E-07 52.0 3.3 25 168-192 26-50 (227)
443 cd03263 ABC_subfamily_A The AB 95.8 0.0085 1.8E-07 51.5 3.3 24 169-192 29-52 (220)
444 PRK15177 Vi polysaccharide exp 95.8 0.0084 1.8E-07 51.7 3.3 24 169-192 14-37 (213)
445 cd03292 ABC_FtsE_transporter F 95.8 0.0086 1.9E-07 51.2 3.3 24 169-192 28-51 (214)
446 COG0410 LivF ABC-type branched 95.8 0.0076 1.6E-07 52.5 2.9 25 168-192 29-53 (237)
447 TIGR02315 ABC_phnC phosphonate 95.8 0.0086 1.9E-07 52.3 3.4 24 169-192 29-52 (243)
448 PF03205 MobB: Molybdopterin g 95.8 0.0073 1.6E-07 48.8 2.7 21 169-189 1-21 (140)
449 TIGR01189 ccmA heme ABC export 95.8 0.0078 1.7E-07 51.0 3.0 25 168-192 26-50 (198)
450 cd02036 MinD Bacterial cell di 95.8 0.04 8.6E-07 45.3 7.2 45 216-271 64-108 (179)
451 cd03257 ABC_NikE_OppD_transpor 95.8 0.0086 1.9E-07 51.7 3.3 25 168-192 31-55 (228)
452 PRK13541 cytochrome c biogenes 95.8 0.0089 1.9E-07 50.6 3.3 24 169-192 27-50 (195)
453 cd03229 ABC_Class3 This class 95.7 0.0094 2E-07 49.7 3.4 25 168-192 26-50 (178)
454 PRK10078 ribose 1,5-bisphospho 95.7 0.0079 1.7E-07 50.6 2.9 22 170-191 4-25 (186)
455 COG3840 ThiQ ABC-type thiamine 95.7 0.0087 1.9E-07 50.6 3.0 24 168-191 25-48 (231)
456 PRK10463 hydrogenase nickel in 95.7 0.016 3.4E-07 52.5 4.9 24 167-190 103-126 (290)
457 COG4559 ABC-type hemin transpo 95.7 0.0081 1.7E-07 51.9 2.9 23 169-191 28-50 (259)
458 TIGR02322 phosphon_PhnN phosph 95.7 0.0077 1.7E-07 50.1 2.7 22 170-191 3-24 (179)
459 cd03301 ABC_MalK_N The N-termi 95.7 0.0095 2.1E-07 51.0 3.4 24 169-192 27-50 (213)
460 TIGR01978 sufC FeS assembly AT 95.7 0.008 1.7E-07 52.5 3.0 23 169-191 27-49 (243)
461 cd03235 ABC_Metallic_Cations A 95.7 0.0092 2E-07 51.1 3.2 24 169-192 26-49 (213)
462 PRK14242 phosphate transporter 95.7 0.0079 1.7E-07 53.0 2.9 23 169-191 33-55 (253)
463 cd03216 ABC_Carb_Monos_I This 95.7 0.0099 2.1E-07 49.0 3.3 25 168-192 26-50 (163)
464 COG1618 Predicted nucleotide k 95.7 0.082 1.8E-06 43.8 8.5 22 168-189 5-26 (179)
465 PF13521 AAA_28: AAA domain; P 95.7 0.0063 1.4E-07 49.9 2.0 22 170-191 1-22 (163)
466 cd03266 ABC_NatA_sodium_export 95.7 0.0087 1.9E-07 51.4 3.0 24 169-192 32-55 (218)
467 cd03215 ABC_Carb_Monos_II This 95.7 0.01 2.2E-07 49.7 3.3 24 169-192 27-50 (182)
468 cd01130 VirB11-like_ATPase Typ 95.6 0.0093 2E-07 50.2 3.0 24 169-192 26-49 (186)
469 PRK11629 lolD lipoprotein tran 95.6 0.01 2.2E-07 51.7 3.3 24 169-192 36-59 (233)
470 cd03254 ABCC_Glucan_exporter_l 95.6 0.01 2.2E-07 51.3 3.4 24 169-192 30-53 (229)
471 cd03256 ABC_PhnC_transporter A 95.6 0.01 2.2E-07 51.7 3.4 25 168-192 27-51 (241)
472 PRK11248 tauB taurine transpor 95.6 0.01 2.2E-07 52.6 3.4 24 169-192 28-51 (255)
473 TIGR03864 PQQ_ABC_ATP ABC tran 95.6 0.0091 2E-07 52.1 3.0 24 169-192 28-51 (236)
474 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.01 2.2E-07 52.6 3.3 22 169-190 31-52 (254)
475 cd03219 ABC_Mj1267_LivG_branch 95.6 0.01 2.2E-07 51.7 3.2 24 169-192 27-50 (236)
476 PRK13540 cytochrome c biogenes 95.6 0.011 2.4E-07 50.3 3.4 25 168-192 27-51 (200)
477 PRK11124 artP arginine transpo 95.6 0.0092 2E-07 52.2 3.0 24 169-192 29-52 (242)
478 TIGR02770 nickel_nikD nickel i 95.6 0.01 2.3E-07 51.5 3.3 24 169-192 13-36 (230)
479 cd03268 ABC_BcrA_bacitracin_re 95.6 0.011 2.3E-07 50.5 3.3 25 168-192 26-50 (208)
480 cd03296 ABC_CysA_sulfate_impor 95.6 0.011 2.3E-07 51.7 3.3 24 169-192 29-52 (239)
481 cd03231 ABC_CcmA_heme_exporter 95.6 0.011 2.3E-07 50.4 3.3 25 168-192 26-50 (201)
482 cd02023 UMPK Uridine monophosp 95.6 0.008 1.7E-07 50.9 2.5 21 171-191 2-22 (198)
483 cd03297 ABC_ModC_molybdenum_tr 95.6 0.0095 2.1E-07 51.1 2.9 24 169-192 24-47 (214)
484 PRK10584 putative ABC transpor 95.6 0.011 2.4E-07 51.2 3.3 25 168-192 36-60 (228)
485 PRK13900 type IV secretion sys 95.6 0.031 6.8E-07 51.6 6.5 24 169-192 161-184 (332)
486 PRK11264 putative amino-acid A 95.6 0.011 2.4E-07 51.9 3.3 24 169-192 30-53 (250)
487 PRK14241 phosphate transporter 95.6 0.0094 2E-07 52.7 2.9 24 169-192 31-54 (258)
488 PRK14247 phosphate ABC transpo 95.6 0.011 2.4E-07 52.0 3.3 24 169-192 30-53 (250)
489 PF05729 NACHT: NACHT domain 95.6 0.022 4.7E-07 45.9 4.9 21 170-190 2-22 (166)
490 cd03238 ABC_UvrA The excision 95.6 0.011 2.5E-07 49.6 3.2 23 168-190 21-43 (176)
491 PRK14262 phosphate ABC transpo 95.6 0.0096 2.1E-07 52.3 2.9 23 169-191 30-52 (250)
492 TIGR03410 urea_trans_UrtE urea 95.6 0.0098 2.1E-07 51.6 2.9 25 168-192 26-50 (230)
493 PRK10895 lipopolysaccharide AB 95.6 0.011 2.4E-07 51.6 3.3 25 168-192 29-53 (241)
494 PRK13539 cytochrome c biogenes 95.6 0.012 2.5E-07 50.4 3.4 25 168-192 28-52 (207)
495 TIGR01188 drrA daunorubicin re 95.6 0.011 2.4E-07 53.7 3.4 24 169-192 20-43 (302)
496 PRK10908 cell division protein 95.6 0.012 2.5E-07 50.9 3.4 25 168-192 28-52 (222)
497 PRK08233 hypothetical protein; 95.5 0.011 2.3E-07 49.0 3.0 23 169-191 4-26 (182)
498 cd03237 ABC_RNaseL_inhibitor_d 95.5 0.01 2.2E-07 52.5 3.0 25 168-192 25-49 (246)
499 PRK14239 phosphate transporter 95.5 0.01 2.2E-07 52.2 2.9 23 169-191 32-54 (252)
500 cd03233 ABC_PDR_domain1 The pl 95.5 0.011 2.5E-07 50.3 3.2 24 169-192 34-57 (202)
No 1
>COG1084 Predicted GTPase [General function prediction only]
Probab=100.00 E-value=4.3e-74 Score=509.87 Aligned_cols=274 Identities=42% Similarity=0.761 Sum_probs=268.4
Q ss_pred cccCcccCCCCCChHHHHHHHHhhhhccCCccccC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCch
Q 035873 2 VQYNFKKITVVPNGKDIVDIILSRTQRQTPTVVHK-GYSITRLRRFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYG 80 (275)
Q Consensus 2 ~~~~f~~ip~v~~~~eli~~~~~r~~r~~~t~~~~-~~~~~rir~~~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~ 80 (275)
|.++|++||+||+++||||++|+||+|.+++..++ .+++.++|.+|+++|+++++.+.++|.+++..||.+|+|||||+
T Consensus 1 ~~~~f~kiptv~~~~ElIdk~f~Ra~r~~~~~~~~~~~~~~kar~~e~~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~ 80 (346)
T COG1084 1 MMNPFKKIPTVPTADELIDKAFRRAERAESTVRPDKGPKIVKAREFEIRRVKTASNIVRDRLDKIVERFPSLDDLHPFYR 80 (346)
T ss_pred CCCccccCCCCCCcHHHHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccChHHH
Confidence 46899999999999999999999999999887777 67889999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhcc
Q 035873 81 DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMAR 160 (275)
Q Consensus 81 el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~ 160 (275)
||+|+++|.|+||.+++.++||...+.+++++|+.++|.+.++++|.+++++++||+.++++++++.+.+|++++.++++
T Consensus 81 eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~ 160 (346)
T COG1084 81 ELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKK 160 (346)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHH
Q 035873 161 LPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCS 240 (275)
Q Consensus 161 ~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~ 240 (275)
+|.++++.++|+++|+||||||||+++||++++++++|||||++.+.||++.++.+||+|||||++|+|.++||.+|+++
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhcC
Q 035873 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSI 275 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ei 275 (275)
+.+|+|+.++|||++|+|+.||+++++|.+||++|
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eI 275 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEI 275 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999985
No 2
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=4.6e-68 Score=490.01 Aligned_cols=275 Identities=68% Similarity=1.141 Sum_probs=272.4
Q ss_pred CcccCcccCCCCCChHHHHHHHHhhhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCch
Q 035873 1 MVQYNFKKITVVPNGKDIVDIILSRTQRQTPTVVHKGYSITRLRRFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYG 80 (275)
Q Consensus 1 ~~~~~f~~ip~v~~~~eli~~~~~r~~r~~~t~~~~~~~~~rir~~~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~ 80 (275)
|+.++|++|++||++.+|+|.+++|+||++||+++++++|.|||.||+++++++.+.|.++|.+|+.+||.++++||||.
T Consensus 1 m~~~nfk~it~Vp~~~~~~d~~ls~tQr~tPTvi~k~~~i~riR~fy~rkvk~~~~~~~~kL~~il~~FP~~~~ihPfy~ 80 (620)
T KOG1490|consen 1 MAKANFKKITPVPDVNDFLDVVLSRTQRKTPTVIRKGFKISRIRQFYARKVKFTQTTLTEKLDDILQEFPKLNDIHPFYA 80 (620)
T ss_pred CcccccccccccCchhHHHHHHHhhhccCCCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhcc
Q 035873 81 DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMAR 160 (275)
Q Consensus 81 el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~ 160 (275)
+|+++||+++||+.+|||++.|++.++.++++|++++++|++.|.|.+++++++|||++++++..+++.+|+++++++.+
T Consensus 81 dL~~~ly~~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~r 160 (620)
T KOG1490|consen 81 DLLNILYDRDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSR 160 (620)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHH
Q 035873 161 LPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCS 240 (275)
Q Consensus 161 ~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~ 240 (275)
+|.+++..++++++|+|||||||++|.++.+++++++|+|||+...+||+.+...+||++||||++++|.++||.+|+++
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhcC
Q 035873 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSI 275 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ei 275 (275)
+.+|+|+..+|||++|.|+.||+++.+|++||++|
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI 275 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI 275 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999975
No 3
>COG2262 HflX GTPases [General function prediction only]
Probab=99.84 E-value=3.1e-20 Score=170.43 Aligned_cols=184 Identities=15% Similarity=0.143 Sum_probs=138.5
Q ss_pred CchhhhhhhhcchhhHHhhcccchhhhhhh--hHHHHHhhhcccCcc-------ccchhhHHHHHhhhHHHHHHhhCchH
Q 035873 78 FYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDS-------LYCCKSLEVAALGRMCTVVKRIGPSL 148 (275)
Q Consensus 78 F~~el~~il~~~d~~k~~l~~v~~a~~~~~--~i~~~~~~~ik~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~l 148 (275)
-..-++|||..+...+++..||+.|...|. ++...|...-+.|.. -+..+..++....|+..+.++++.
T Consensus 98 Rt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~-- 175 (411)
T COG2262 98 RTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELEN-- 175 (411)
T ss_pred hHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH--
Confidence 467899999999999999999999999998 444444443333322 244455677777777766665532
Q ss_pred HHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-CeeEEEEeCCCCCC
Q 035873 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILD 227 (275)
Q Consensus 149 ~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~ 227 (275)
++..++...+ .....+.+.|+++||+|+|||||+|+|++..+.+.+..|+|.++....+.+. +..+.+.||.|+++
T Consensus 176 --v~~~R~~~R~-~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~ 252 (411)
T COG2262 176 --VEKAREPRRK-KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR 252 (411)
T ss_pred --HHHHHHHHhh-hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcc
Confidence 3222222111 1223467899999999999999999999999999999999999999999987 58999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
+.+...-+-.+.++....+. |++|+|+|+|++ ...+|++
T Consensus 253 ~LP~~LV~AFksTLEE~~~a-DlllhVVDaSdp---~~~~~~~ 291 (411)
T COG2262 253 DLPHPLVEAFKSTLEEVKEA-DLLLHVVDASDP---EILEKLE 291 (411)
T ss_pred cCChHHHHHHHHHHHHhhcC-CEEEEEeecCCh---hHHHHHH
Confidence 87776555556666666666 999999999987 4444444
No 4
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.81 E-value=6.5e-19 Score=163.13 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=119.0
Q ss_pred CchhhhhhhhcchhhHHhhcccchhhhhhh--hHHHHHhhhcccCccc--c-----chhhHHHHHhhhHHHHHHhhCchH
Q 035873 78 FYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDSL--Y-----CCKSLEVAALGRMCTVVKRIGPSL 148 (275)
Q Consensus 78 F~~el~~il~~~d~~k~~l~~v~~a~~~~~--~i~~~~~~~ik~~~~~--~-----~~~~~~~~~~~r~~~~~~~~~~~l 148 (275)
-+.-+++||..+++.+++..|+..|...+. ++...|..+.+.+..+ . ....-++....|+..+..++
T Consensus 95 r~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L---- 170 (351)
T TIGR03156 95 RTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKEL---- 170 (351)
T ss_pred hHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH----
Confidence 488899999999999999999999999886 3434444433321110 1 11122344444544444433
Q ss_pred HHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe-cCeeEEEEeCCCCCC
Q 035873 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILD 227 (275)
Q Consensus 149 ~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~ 227 (275)
..+...+..-+.. ....+.++|+++|+||||||||+|+|++.++.+.+++|+|.++....+.+ ++..+++|||||+..
T Consensus 171 ~~~~~~~~~~r~~-r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 171 EKVEKQRERQRRR-RKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred HHHHHHHHHHHhh-hcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 2222222211111 11235579999999999999999999999877889999999999999988 567999999999966
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
..+...-+..+.++..+.++ |++|+|+|++++.
T Consensus 250 ~l~~~lie~f~~tle~~~~A-Dlil~VvD~s~~~ 282 (351)
T TIGR03156 250 DLPHELVAAFRATLEEVREA-DLLLHVVDASDPD 282 (351)
T ss_pred cCCHHHHHHHHHHHHHHHhC-CEEEEEEECCCCc
Confidence 43222111123344455555 9999999999764
No 5
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=1.4e-18 Score=164.54 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=119.8
Q ss_pred CchhhhhhhhcchhhHHhhcccchhhhhhh--hHHHHHhhhcccCccc-------cchhhHHHHHhhhHHHHHHhhCchH
Q 035873 78 FYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDSL-------YCCKSLEVAALGRMCTVVKRIGPSL 148 (275)
Q Consensus 78 F~~el~~il~~~d~~k~~l~~v~~a~~~~~--~i~~~~~~~ik~~~~~-------~~~~~~~~~~~~r~~~~~~~~~~~l 148 (275)
-+.-+++||..+++.+++..||+.|...+. ++...|..+-+.+..+ +..+.-++....|+..+.++++...
T Consensus 103 R~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~ 182 (426)
T PRK11058 103 RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVE 182 (426)
T ss_pred chhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999998 4444565554443211 1122234445555555544443222
Q ss_pred HHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-eEEEEeCCCCCC
Q 035873 149 AYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILD 227 (275)
Q Consensus 149 ~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~ 227 (275)
.. +..- +......+.+.|+++|+||||||||+|+|++.++.+.+.||+|.++..+.+.+.+. .+.+|||||+..
T Consensus 183 ~~----r~~~-r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 183 KQ----REQG-RRARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred Hh----HHHH-HHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 11 1110 10011124468999999999999999999999988899999999999998888764 889999999965
Q ss_pred CCCCchhHHH--HHHHHHHHhccceeEEEEeCCCCC
Q 035873 228 RPFEDHNIIE--MCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 228 ~~~~~~~~~e--~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
..+. ..++ ..+...++. +|++|+|+|+|++.
T Consensus 258 ~lp~--~lve~f~~tl~~~~~-ADlIL~VvDaS~~~ 290 (426)
T PRK11058 258 HLPH--DLVAAFKATLQETRQ-ATLLLHVVDAADVR 290 (426)
T ss_pred cCCH--HHHHHHHHHHHHhhc-CCEEEEEEeCCCcc
Confidence 4221 2232 223333444 49999999999753
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=7.2e-19 Score=155.83 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=91.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
..-|+++|.||||||||+|+|.|.++. +++.|.||+....|.++.++.++.++||||+..........+.+.+..++..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 447899999999999999999999987 9999999999999999999999999999999877444333334566788888
Q ss_pred ccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 247 LRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
+ |+||||+|++++++...+.+++.+++
T Consensus 86 v-Dlilfvvd~~~~~~~~d~~il~~lk~ 112 (298)
T COG1159 86 V-DLILFVVDADEGWGPGDEFILEQLKK 112 (298)
T ss_pred C-cEEEEEEeccccCCccHHHHHHHHhh
Confidence 7 99999999999999988888887754
No 7
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.77 E-value=3.4e-18 Score=140.53 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=75.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH-hcc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA-HLR 248 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~-~~~ 248 (275)
+|+++|.||||||||+|+|+|.+..++++|++|.+...+.+.+++..+.++||||+.+-... ..-|+.+..++. +-+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~--s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK--SEEERVARDYLLSEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSS--SHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCC--CcHHHHHHHHHhhcCC
Confidence 68999999999999999999999999999999999999999999999999999998764322 333555666653 446
Q ss_pred ceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 249 SAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 249 d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
|++++|+|++. ++..+.++
T Consensus 80 D~ii~VvDa~~-----l~r~l~l~ 98 (156)
T PF02421_consen 80 DLIIVVVDATN-----LERNLYLT 98 (156)
T ss_dssp SEEEEEEEGGG-----HHHHHHHH
T ss_pred CEEEEECCCCC-----HHHHHHHH
Confidence 99999999983 44444443
No 8
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.77 E-value=5.3e-18 Score=139.75 Aligned_cols=105 Identities=68% Similarity=1.100 Sum_probs=85.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
++|+++|.+|||||||+|+|++..+.+++++++|.+...+...+++..+++|||||+.+.+...++.++..+..++.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 47999999999999999999999887888899999999888888888999999999976655455556556666667767
Q ss_pred ceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 249 SAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 249 d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
|++|+|+|+++..+.+.+.+..+++
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~ 105 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFE 105 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHH
Confidence 9999999999876666666555554
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=5.9e-18 Score=157.54 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=87.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC-CchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF-EDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~e~~~~~~l~~ 246 (275)
+.|++||.||||||||+|+|+|.+.. |+++|++|++...+...|.+..+.+|||+|+.+... +....+..++..++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999876 999999999999999999999999999999997653 3455666788889998
Q ss_pred ccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 247 LRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
+ |++|||+|+.++.....+.-+++|+
T Consensus 84 A-DvilfvVD~~~Git~~D~~ia~~Lr 109 (444)
T COG1160 84 A-DVILFVVDGREGITPADEEIAKILR 109 (444)
T ss_pred C-CEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8 9999999999544344444444443
No 10
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=7.6e-18 Score=150.37 Aligned_cols=95 Identities=25% Similarity=0.413 Sum_probs=82.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.+..++++||+|+||||||+|+||+.+.++++|||||..+..|.+.|+|..+|++|+||++.+....++.. ++.+.+.+
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG-~~vlsv~R 139 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG-RQVLSVAR 139 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc-ceeeeeec
Confidence 45679999999999999999999999999999999999999999999999999999999999887776543 23345555
Q ss_pred hccceeEEEEeCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCG 262 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g 262 (275)
.+ |+|++|+|+.....
T Consensus 140 ~A-DlIiiVld~~~~~~ 155 (365)
T COG1163 140 NA-DLIIIVLDVFEDPH 155 (365)
T ss_pred cC-CEEEEEEecCCChh
Confidence 55 99999999986543
No 11
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1.1e-18 Score=156.76 Aligned_cols=178 Identities=21% Similarity=0.259 Sum_probs=130.5
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh-------------HHHHHhhhHHHHHHhhCchHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS-------------LEVAALGRMCTVVKRIGPSLAYLEQIR 155 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~-------------~~~~~~~r~~~~~~~~~~~l~~l~~~~ 155 (275)
..+|++.-|+.+..++....-+++.+-.++.|+.+++.+. +..+..|+.+..+.+++++.+.....
T Consensus 62 ~~~f~A~~G~~G~~~~~~G~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~nrAP~~- 140 (369)
T COG0536 62 KKHFKAENGENGMGRNRTGAKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSVNRAPRF- 140 (369)
T ss_pred ceEEEccCCCCCCCCCCCCCCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCcccCCccc-
Confidence 4678999999999999999999999999999999887641 22223344444444444333221110
Q ss_pred HHhccCCCCC-------CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe-cCeeEEEEeCCCCCC
Q 035873 156 QHMARLPSID-------PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILD 227 (275)
Q Consensus 156 ~~l~~~~~~~-------~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~ 227 (275)
.....+... .-...|++||+||+|||||+++++.+++.+++|||||..++.|.+.. .+.++.+-|.||+++
T Consensus 141 -a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIE 219 (369)
T COG0536 141 -ATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIE 219 (369)
T ss_pred -CCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCccccc
Confidence 000111100 01246899999999999999999999999999999999999999987 456799999999999
Q ss_pred CCCCchhHHHHHHHHHHHhcc--ceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 228 RPFEDHNIIEMCSITALAHLR--SAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~--d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
...+.... ...+|+|+. .+++||||.+..-+.+..++++.+
T Consensus 220 GAs~G~GL----G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i 262 (369)
T COG0536 220 GASEGVGL----GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTI 262 (369)
T ss_pred ccccCCCc----cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHH
Confidence 98776443 367788874 689999999977666666666544
No 12
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.2e-17 Score=156.55 Aligned_cols=167 Identities=23% Similarity=0.297 Sum_probs=112.7
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh-------------HHHHHhhhHHHHHHhhCchHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS-------------LEVAALGRMCTVVKRIGPSLAYLEQIR 155 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~-------------~~~~~~~r~~~~~~~~~~~l~~l~~~~ 155 (275)
..+|++.-|+.+...+..+.-+++.+..++.|+.+++.+. +..+-.|+.+.....+....+... +
T Consensus 62 ~~~~~a~~G~~g~~~~~~g~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p--~ 139 (390)
T PRK12298 62 ERHFRAERGQNGQGRDCTGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAP--R 139 (390)
T ss_pred CceEEcCCCCCCCCCCCCCCCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhccCccCCC--c
Confidence 3578899999999999999999999999999998875321 222223333333332221111000 0
Q ss_pred HHhccCCCCC-------CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC-eeEEEEeCCCCCC
Q 035873 156 QHMARLPSID-------PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILD 227 (275)
Q Consensus 156 ~~l~~~~~~~-------~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~ 227 (275)
......|... .-...|++||+||||||||+|+|+++++.+++|||||+.++.+.+.+.+ ..+.++||||+.+
T Consensus 140 ~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~ 219 (390)
T PRK12298 140 QKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIE 219 (390)
T ss_pred ccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccc
Confidence 0000000000 0123799999999999999999999999999999999999999998875 4699999999987
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
......... ...+..+..+ |+++||+|++.
T Consensus 220 ~a~~~~~Lg-~~~l~~i~ra-dvlL~VVD~s~ 249 (390)
T PRK12298 220 GASEGAGLG-IRFLKHLERC-RVLLHLIDIAP 249 (390)
T ss_pred cccchhhHH-HHHHHHHHhC-CEEEEEeccCc
Confidence 654332111 1223344444 99999999984
No 13
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.72 E-value=1.4e-17 Score=149.86 Aligned_cols=207 Identities=16% Similarity=0.178 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCC--CCCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccc
Q 035873 46 FYMRKVKYTQQNFFEKLSTIIDEFPR--LDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSL 123 (275)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~i~~~fp~--i~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~ 123 (275)
.+..++.++.+.|...+......... +|+ +|++||+++|+..|. .++.+...++.+.++ . .+. ...
T Consensus 36 ~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de--~~~eeLE~~Li~aDv------g~e~~~~i~~~l~~~-~--~~~-~~~ 103 (340)
T COG0552 36 RLKQGLSKTKKNFGKGIKGLFLKKIKEKLDE--DLLEELEELLIEADV------GVETAEEIIEELRKR-E--GKK-KKI 103 (340)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccchhH--HHHHHHHHHHHHccc------cHHHHHHHHHHHHHH-h--ccc-ccC
Confidence 45567788888888888654444333 455 899999999999996 334444444444443 1 111 112
Q ss_pred cchhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHh------cCCccccc
Q 035873 124 YCCKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKIT------RADVDVQP 197 (275)
Q Consensus 124 ~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~ 197 (275)
.+.+.++......+..++..... ......+ ..+..+..|+++|.+|+||||.|.+|+ |.++-.+.
T Consensus 104 ~~~~~v~~~l~~~l~~il~~~~~-~~~~~~~--------~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA 174 (340)
T COG0552 104 KDEETVKEALREALIEILRPVDK-VDLPLEI--------PKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA 174 (340)
T ss_pred CCHHHHHHHHHHHHHHHhccccc-ccchhhh--------ccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence 22333444444444333322111 0000000 113457799999999999999999997 44455555
Q ss_pred CCCcccceEEEEEEe------------------------------cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 198 YAFTTKSLFVGHTDY------------------------------KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 198 ~~~tT~~~~~~~~~~------------------------------~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
.+++..+...+.-.| .+.++.++||+|.+++..+.|+++++.....-+..
T Consensus 175 ~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~ 254 (340)
T COG0552 175 GDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD 254 (340)
T ss_pred cchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc
Confidence 555444332221111 12579999999999999999999998765554444
Q ss_pred c---ceeEEEEeCCCCCCCCHHHHHHHHhcC
Q 035873 248 R---SAVLFFLDISGSCGYSIAQQAALFHSI 275 (275)
Q Consensus 248 ~---d~il~viD~s~~~g~~~~~q~~l~~ei 275 (275)
+ +-+++|+|++ +|++..+|.+.|+++
T Consensus 255 ~~ap~e~llvlDAt--tGqnal~QAk~F~ea 283 (340)
T COG0552 255 PDAPHEILLVLDAT--TGQNALSQAKIFNEA 283 (340)
T ss_pred CCCCceEEEEEEcc--cChhHHHHHHHHHHh
Confidence 3 3499999999 999999999999874
No 14
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.6e-17 Score=147.80 Aligned_cols=101 Identities=31% Similarity=0.511 Sum_probs=88.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
..|++||+||+|||||+|+|+.+++.+++|+|||..+..+.+.+++. ++.|-|.||+++.....+.. ...+|+|.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl----G~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL----GYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcc----cHHHHHHH
Confidence 46899999999999999999999999999999999999999999876 49999999999988655443 46788887
Q ss_pred c--ceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 248 R--SAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 248 ~--d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
. +.++||+|.|...-.+.++|+.+|.
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~ 300 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLI 300 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHH
Confidence 4 7899999999776679999998774
No 15
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.1e-17 Score=157.78 Aligned_cols=162 Identities=23% Similarity=0.351 Sum_probs=115.0
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh-------------HHHHHhhhHHHHHHhhCchHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS-------------LEVAALGRMCTVVKRIGPSLAYLEQIR 155 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~-------------~~~~~~~r~~~~~~~~~~~l~~l~~~~ 155 (275)
..+|++.-|+.+...+..+.-+++.+-.++.|+.+++.+. +..+-.|+.+....++..+.
T Consensus 61 ~~~~~a~~G~~g~~~~~~G~~g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~------- 133 (424)
T PRK12297 61 KRHFKAENGENGMGKNMHGRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATST------- 133 (424)
T ss_pred ccEEEcCCCCCCCCCCCCCCCCCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCCC-------
Confidence 3578999999999999999999999999999998876421 11112222222222221111
Q ss_pred HHhccCCCCC-CCC--------------ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-CeeEEE
Q 035873 156 QHMARLPSID-PNT--------------RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQV 219 (275)
Q Consensus 156 ~~l~~~~~~~-~~~--------------~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~l 219 (275)
.+.|... .+. ..|+++|.||||||||+|+|+++++.+++|||||..++.+.+.+. +.++.+
T Consensus 134 ---~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~l 210 (424)
T PRK12297 134 ---NQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVM 210 (424)
T ss_pred ---CCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEE
Confidence 1122111 122 389999999999999999999999999999999999999999887 789999
Q ss_pred EeCCCCCCCCCCchhHHHHHHHHHHHhc--cceeEEEEeCCCCCCCC
Q 035873 220 IDTPGILDRPFEDHNIIEMCSITALAHL--RSAVLFFLDISGSCGYS 264 (275)
Q Consensus 220 iDTpG~~~~~~~~~~~~e~~~~~~l~~~--~d~il~viD~s~~~g~~ 264 (275)
+||||+++....... ....+++|. .++++||+|+++..+..
T Consensus 211 aD~PGliega~~~~g----Lg~~fLrhier~~llI~VID~s~~~~~d 253 (424)
T PRK12297 211 ADIPGLIEGASEGVG----LGHQFLRHIERTRVIVHVIDMSGSEGRD 253 (424)
T ss_pred EECCCCcccccccch----HHHHHHHHHhhCCEEEEEEeCCccccCC
Confidence 999999875543322 223344543 39999999998653333
No 16
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=1.1e-16 Score=147.24 Aligned_cols=167 Identities=23% Similarity=0.323 Sum_probs=113.1
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh-------------HHHHHhhhHHHHHHhhCchHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS-------------LEVAALGRMCTVVKRIGPSLAYLEQIR 155 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~-------------~~~~~~~r~~~~~~~~~~~l~~l~~~~ 155 (275)
..+|++.-|+.....+....-+++.+..++.|+.+++.+. +..+-.|+.+.....+..+.+... +
T Consensus 61 ~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p--~ 138 (335)
T PRK12299 61 KRHFKAENGENGMGRNRTGKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAP--R 138 (335)
T ss_pred ccEEECCCCCCCCCCCCCCCCCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCC--c
Confidence 3578899999999999999999999999999998876431 111122222222222211111000 0
Q ss_pred HHhccCCCCC-------CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe-cCeeEEEEeCCCCCC
Q 035873 156 QHMARLPSID-------PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILD 227 (275)
Q Consensus 156 ~~l~~~~~~~-------~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~ 227 (275)
..-...+... .-...|++||+||||||||+|+|+++++.+++|||||..++.+.+.+ ++.+++++||||+++
T Consensus 139 ~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 139 YATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred cccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 0000000000 01257899999999999999999999999999999999999999998 457899999999997
Q ss_pred CCCCchhHHHHHHHHHHHhc--cceeEEEEeCCCCC
Q 035873 228 RPFEDHNIIEMCSITALAHL--RSAVLFFLDISGSC 261 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~--~d~il~viD~s~~~ 261 (275)
....... + ...+++|. +++++||+|+++..
T Consensus 219 ga~~~~g-L---g~~flrhie~a~vlI~ViD~s~~~ 250 (335)
T PRK12299 219 GASEGAG-L---GHRFLKHIERTRLLLHLVDIEAVD 250 (335)
T ss_pred CCCcccc-H---HHHHHHHhhhcCEEEEEEcCCCCC
Confidence 6654322 2 23344443 38999999999643
No 17
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=2e-16 Score=123.43 Aligned_cols=89 Identities=26% Similarity=0.410 Sum_probs=70.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchh-HHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHN-IIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~-~~e~~~~~~l~~~ 247 (275)
+|+++|.||+|||||+|+|++.+. .+++.+++|+....+.+.+++..+.++||||+.+....... .........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 489999999999999999999764 58999999999988888899999999999999875433211 1222344555444
Q ss_pred cceeEEEEeCCC
Q 035873 248 RSAVLFFLDISG 259 (275)
Q Consensus 248 ~d~il~viD~s~ 259 (275)
|+++||+|++.
T Consensus 81 -d~ii~vv~~~~ 91 (116)
T PF01926_consen 81 -DLIIYVVDASN 91 (116)
T ss_dssp -SEEEEEEETTS
T ss_pred -CEEEEEEECCC
Confidence 99999999875
No 18
>PTZ00258 GTP-binding protein; Provisional
Probab=99.69 E-value=2.2e-16 Score=147.24 Aligned_cols=105 Identities=14% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-----------------eEEEEeCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRP 229 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~ 229 (275)
....|++||.||||||||+|+|++.++.+++|||||.+++.+.+.+.+. +++++||||+....
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 4568999999999999999999999999999999999999999887643 48999999999765
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCCC-------CCCHHHHHHHHh
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGSC-------GYSIAQQAALFH 273 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~-------g~~~~~q~~l~~ 273 (275)
..... +..+.+..++++ |+++||+|+.+.. +.+..++++.++
T Consensus 100 ~~g~g-Lg~~fL~~Ir~a-D~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~ 148 (390)
T PTZ00258 100 SEGEG-LGNAFLSHIRAV-DGIYHVVRAFEDEDITHVEGEIDPVRDLEIIS 148 (390)
T ss_pred cchhH-HHHHHHHHHHHC-CEEEEEEeCCCCCCccccCCCCCHHHHHHHHH
Confidence 44322 223445666666 9999999996432 346777777554
No 19
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.68 E-value=2.8e-16 Score=140.53 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=77.9
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-----------------eEEEEeCCCCCCCCCCch
Q 035873 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRPFEDH 233 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~~~~~ 233 (275)
|++||.||||||||+|+|++.++.+++|||||.+++.+.+.+.+. .++++||||+.+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999999999999999999999988764 489999999997654332
Q ss_pred hHHHHHHHHHHHhccceeEEEEeCCCCC------C-CCHHHHHHHHh
Q 035873 234 NIIEMCSITALAHLRSAVLFFLDISGSC------G-YSIAQQAALFH 273 (275)
Q Consensus 234 ~~~e~~~~~~l~~~~d~il~viD~s~~~------g-~~~~~q~~l~~ 273 (275)
. +-.+.+..++++ |++++|+|+.+.. | .+..+++++++
T Consensus 81 g-lg~~fL~~i~~~-D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~ 125 (274)
T cd01900 81 G-LGNKFLSHIREV-DAIAHVVRCFEDDDITHVEGSVDPVRDIEIIN 125 (274)
T ss_pred H-HHHHHHHHHHhC-CEEEEEEeCcCCCCccCCCCCCCHHHHHHHHH
Confidence 2 222334555555 9999999986431 2 25666666543
No 20
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=5.6e-16 Score=144.78 Aligned_cols=89 Identities=29% Similarity=0.394 Sum_probs=77.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHH----HHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIE----MCSI 241 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e----~~~~ 241 (275)
+..+++++|.||||||||+|+|++.+.. |.+.|+||++....++..+|..+.++||+|+-+.. +.+| .+++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~----d~VE~iGIeRs~ 291 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD----DVVERIGIERAK 291 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc----cHHHHHHHHHHH
Confidence 5668999999999999999999999865 99999999999999999999999999999998544 3444 3456
Q ss_pred HHHHhccceeEEEEeCCCC
Q 035873 242 TALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~ 260 (275)
..+.++ |.||||+|++.+
T Consensus 292 ~~i~~A-DlvL~v~D~~~~ 309 (454)
T COG0486 292 KAIEEA-DLVLFVLDASQP 309 (454)
T ss_pred HHHHhC-CEEEEEEeCCCC
Confidence 677776 999999999975
No 21
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.67 E-value=5.7e-16 Score=142.36 Aligned_cols=177 Identities=20% Similarity=0.256 Sum_probs=115.3
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh-------------HHHHHhhhHHHHHHhhCchHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS-------------LEVAALGRMCTVVKRIGPSLAYLEQIR 155 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~-------------~~~~~~~r~~~~~~~~~~~l~~l~~~~ 155 (275)
..+|++.-|+.....+....-+++.+-.++.|+.+++.+. +..+-.|+.+.....+..+.+... +
T Consensus 60 ~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p--~ 137 (329)
T TIGR02729 60 QRHFKAENGENGMGKNRTGKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAP--R 137 (329)
T ss_pred CcEEEcCCCCCCCCCCCCCCCCCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCccCCCC--c
Confidence 3578888999999999999999999999999988876421 111112222222211111110000 0
Q ss_pred HHhccCCCCC-------CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC-eeEEEEeCCCCCC
Q 035873 156 QHMARLPSID-------PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILD 227 (275)
Q Consensus 156 ~~l~~~~~~~-------~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~ 227 (275)
..-...+... .-...|++||+||||||||+|+|+++++.+++|||||..++.+.+.+.+ .+++++||||+++
T Consensus 138 ~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 138 FATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred ccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 0000000000 0125789999999999999999999999999999999999999999877 8999999999987
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHH
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~ 269 (275)
....... +....+..+..+ ++++||+|+++..+.+..+++
T Consensus 218 ~a~~~~g-Lg~~flrhiera-d~ll~VvD~s~~~~~~~~e~l 257 (329)
T TIGR02729 218 GASEGAG-LGHRFLKHIERT-RVLLHLIDISPLDGRDPIEDY 257 (329)
T ss_pred CCccccc-HHHHHHHHHHhh-CEEEEEEcCccccccCHHHHH
Confidence 6544322 212223333334 899999999865333333333
No 22
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=4.4e-16 Score=149.10 Aligned_cols=165 Identities=19% Similarity=0.241 Sum_probs=112.3
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh------------HHHHHhhhHHHHHHhhCchHHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS------------LEVAALGRMCTVVKRIGPSLAYLEQIRQ 156 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~------------~~~~~~~r~~~~~~~~~~~l~~l~~~~~ 156 (275)
+.+|++.-|+.+...+..+.-+++.+-.++.|+.+++... +..+..|+.+..+..+....+... +.
T Consensus 63 ~~~~~a~~G~~G~~~~~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p--~~ 140 (500)
T PRK12296 63 RPHRKATNGKPGMGDNRDGAAGEDLVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAP--GF 140 (500)
T ss_pred CceEECCCCCCCCCCCCCCCCCCceEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCC--cc
Confidence 4578999999999999999999999999999988875321 111111222222222211110000 00
Q ss_pred HhccCCCCC-------CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 157 HMARLPSID-------PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 157 ~l~~~~~~~-------~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
.....|... .-...|++||+||||||||+|+|+++++.+++|||||..++.+.+.+.+.+++++||||+++..
T Consensus 141 ~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliega 220 (500)
T PRK12296 141 ALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGA 220 (500)
T ss_pred ccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCcccc
Confidence 000000000 1235799999999999999999999999999999999999999999999999999999998755
Q ss_pred CCchhHHHHHHHHHHHhc--cceeEEEEeCCC
Q 035873 230 FEDHNIIEMCSITALAHL--RSAVLFFLDISG 259 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~--~d~il~viD~s~ 259 (275)
..... ....+++|. +|+++||+|++.
T Consensus 221 s~g~g----Lg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 221 SEGKG----LGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred chhhH----HHHHHHHHHHhcCEEEEEECCcc
Confidence 43221 223344443 389999999985
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.66 E-value=6.7e-16 Score=138.19 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=72.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
.|+++|.||||||||+|+|+|.++. +++.|+||+....+....++.++.++||||+.+........+.+.+..++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a- 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV- 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC-
Confidence 6899999999999999999999865 88999999998888776677789999999998653222222223345566665
Q ss_pred ceeEEEEeCCCCCC
Q 035873 249 SAVLFFLDISGSCG 262 (275)
Q Consensus 249 d~il~viD~s~~~g 262 (275)
|+++||+|++....
T Consensus 81 Dvvl~VvD~~~~~~ 94 (270)
T TIGR00436 81 DLILFVVDSDQWNG 94 (270)
T ss_pred CEEEEEEECCCCCc
Confidence 99999999996543
No 24
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.66 E-value=8.4e-16 Score=141.89 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=79.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-----------------eEEEEeCCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRPFE 231 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~~~ 231 (275)
.+|++||.||||||||+|+|++.++.+++|||||.+++.|.+.+.+. ++.++||||+.+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 47999999999999999999999999999999999999999887663 5899999999976544
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCC------CC-CCHHHHHHHHh
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGS------CG-YSIAQQAALFH 273 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~------~g-~~~~~q~~l~~ 273 (275)
... +-.+.+..++++ |++++|+|++.. .| .+..+++++++
T Consensus 83 g~g-lg~~fL~~i~~a-D~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~ 129 (364)
T PRK09601 83 GEG-LGNQFLANIREV-DAIVHVVRCFEDDNITHVEGKVDPIRDIETIN 129 (364)
T ss_pred HHH-HHHHHHHHHHhC-CEEEEEEeCCccCCCCCCCCCCCHHHHHHHHH
Confidence 322 223345555665 999999999742 12 35666666543
No 25
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.63 E-value=2.8e-15 Score=140.77 Aligned_cols=103 Identities=29% Similarity=0.425 Sum_probs=78.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe------------------------cCeeEEEEeCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY------------------------KYLRYQVIDTPG 224 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~------------------------~~~~~~liDTpG 224 (275)
.+|++||.||||||||+|+|++..+.+++|||||.+++.|.... ....++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 47999999999999999999999999999999999999987552 124689999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC----------CCCHHHHHHHHh
Q 035873 225 ILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC----------GYSIAQQAALFH 273 (275)
Q Consensus 225 ~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~----------g~~~~~q~~l~~ 273 (275)
+.++...... +..+.+..++++ |++++|+|+++.. ..+..+++++++
T Consensus 82 l~~ga~~g~g-lg~~fL~~ir~a-d~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~ 138 (396)
T PRK09602 82 LVPGAHEGRG-LGNQFLDDLRQA-DALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLE 138 (396)
T ss_pred cCCCccchhh-HHHHHHHHHHHC-CEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHH
Confidence 9876543322 222345566776 9999999998432 235666776554
No 26
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.63 E-value=3.3e-15 Score=136.50 Aligned_cols=101 Identities=29% Similarity=0.429 Sum_probs=77.4
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe------------------------cCeeEEEEeCCCCC
Q 035873 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY------------------------KYLRYQVIDTPGIL 226 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~------------------------~~~~~~liDTpG~~ 226 (275)
|+++|.||||||||+|+|++..+.+++|||||.+++.+...+ .+..+++|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999999999999999999887664 22468999999998
Q ss_pred CCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC----------CCCHHHHHHHHh
Q 035873 227 DRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC----------GYSIAQQAALFH 273 (275)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~----------g~~~~~q~~l~~ 273 (275)
.+...... +-.+.+..++++ |++++|+|+++.. +.+..+|++++.
T Consensus 81 ~ga~~~~g-lg~~fL~~ir~a-D~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~ 135 (318)
T cd01899 81 PGAHEGKG-LGNKFLDDLRDA-DALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLE 135 (318)
T ss_pred CCccchhh-HHHHHHHHHHHC-CEEEEEEeCCCCcccccccccCCCCCHHHHHHHHH
Confidence 76543322 223345667777 9999999998521 235666766543
No 27
>PRK15494 era GTPase Era; Provisional
Probab=99.61 E-value=7.2e-15 Score=135.70 Aligned_cols=96 Identities=28% Similarity=0.381 Sum_probs=75.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
....|+++|.||||||||+|+|.+.++. +++.++||++...+.+.+++.++.+|||||+.+........+.+.+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 3458999999999999999999998875 678899999998888889899999999999875433322233344555666
Q ss_pred hccceeEEEEeCCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~ 263 (275)
.+ |++|||+|++...+.
T Consensus 131 ~a-Dvil~VvD~~~s~~~ 147 (339)
T PRK15494 131 SA-DLVLLIIDSLKSFDD 147 (339)
T ss_pred hC-CEEEEEEECCCCCCH
Confidence 65 999999998865443
No 28
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=1.4e-14 Score=123.84 Aligned_cols=95 Identities=21% Similarity=0.191 Sum_probs=70.3
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
+..++|+++|.+|||||||+|+|++....+.+.+++|..+..+.+.+.+. .+++|||||+.+.........-......+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 44579999999999999999999998877777788888888888877665 89999999987653322111111122223
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
.. +|++++|+|++++.
T Consensus 119 ~~-~d~ii~v~D~~~~~ 134 (204)
T cd01878 119 AE-ADLLLHVVDASDPD 134 (204)
T ss_pred hc-CCeEEEEEECCCCC
Confidence 33 49999999998654
No 29
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.60 E-value=8.7e-15 Score=128.38 Aligned_cols=89 Identities=27% Similarity=0.457 Sum_probs=73.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.||+|||||+|+|++....++++||+|.++..+.+.+++..+++|||||+.+...... ....+....++++ |
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~~~~a-d 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK-GRGRQVIAVARTA-D 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch-hHHHHHHHhhccC-C
Confidence 6899999999999999999999988999999999999999999999999999999876543222 2223334555555 9
Q ss_pred eeEEEEeCCCC
Q 035873 250 AVLFFLDISGS 260 (275)
Q Consensus 250 ~il~viD~s~~ 260 (275)
++++|+|++++
T Consensus 80 ~il~V~D~t~~ 90 (233)
T cd01896 80 LILMVLDATKP 90 (233)
T ss_pred EEEEEecCCcc
Confidence 99999999853
No 30
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6e-15 Score=137.96 Aligned_cols=104 Identities=26% Similarity=0.294 Sum_probs=84.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHH----HHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIE----MCSI 241 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e----~~~~ 241 (275)
....|+++|.||||||||+|+|+..+.. |++.|+||++.....++.+|..+.++||+|+.+... ..+| +++.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEALGIERAR 343 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHHHhHHHHH
Confidence 4568999999999999999999998865 999999999999999999999999999999987222 2233 4556
Q ss_pred HHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
..+... |+|++|+|+-+..-.+...+.+.+++
T Consensus 344 k~~~~a-dvi~~vvda~~~~t~sd~~i~~~l~~ 375 (531)
T KOG1191|consen 344 KRIERA-DVILLVVDAEESDTESDLKIARILET 375 (531)
T ss_pred HHHhhc-CEEEEEecccccccccchHHHHHHHH
Confidence 667766 99999999965555566666666543
No 31
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=6.5e-15 Score=137.32 Aligned_cols=97 Identities=27% Similarity=0.263 Sum_probs=79.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHH----HHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIE----MCSI 241 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e----~~~~ 241 (275)
.+.+|+++|.||||||||+|+|+|..- -+++.|+||++++...+++++..+.++||+|+-....-. +..| ..+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~-e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT-ESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc-cceEEEeehhhH
Confidence 468999999999999999999999874 599999999999999999999999999999987654322 2233 2455
Q ss_pred HHHHhccceeEEEEeCCCCCCCCH
Q 035873 242 TALAHLRSAVLFFLDISGSCGYSI 265 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~g~~~ 265 (275)
.++..+ |++++|+|++++.....
T Consensus 256 ~aI~~a-~vvllviDa~~~~~~qD 278 (444)
T COG1160 256 KAIERA-DVVLLVIDATEGISEQD 278 (444)
T ss_pred hHHhhc-CEEEEEEECCCCchHHH
Confidence 666766 99999999997654433
No 32
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.59 E-value=7.5e-15 Score=120.99 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=69.1
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
.|+++|.+|||||||+|+|++..+.++.+|++|..+..+.+.+++. .+++|||||+.+...... .+....+..+..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~~~- 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGK-GLGHRFLRHIERT- 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccC-CchHHHHHHHHhC-
Confidence 5899999999999999999998888888899999998888888776 899999999865332211 1112223334444
Q ss_pred ceeEEEEeCCCC
Q 035873 249 SAVLFFLDISGS 260 (275)
Q Consensus 249 d~il~viD~s~~ 260 (275)
|++++|+|+++.
T Consensus 80 d~vi~v~D~~~~ 91 (170)
T cd01898 80 RLLLHVIDLSGD 91 (170)
T ss_pred CEEEEEEecCCC
Confidence 999999999964
No 33
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=1.3e-14 Score=137.60 Aligned_cols=102 Identities=23% Similarity=0.212 Sum_probs=79.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 170 TILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
+|+++|.||||||||+|+|++... .+.++|++|++...+.+.|++..+.+|||||+..........+..++..++++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a- 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA- 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC-
Confidence 489999999999999999998875 478899999999999999999999999999986543333345556666777776
Q ss_pred ceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 249 SAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 249 d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
|+++||+|++.+......+-++.+
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l 103 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWL 103 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999864433333333443
No 34
>PRK00089 era GTPase Era; Reviewed
Probab=99.58 E-value=1.7e-14 Score=130.29 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=76.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...|+++|.||||||||+|+|+|.++. +++.|.||.....+....++.++.++||||+.+........+...+..++..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999875 7888999999888877766679999999998764422212222334455555
Q ss_pred ccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 247 LRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
. |+++||+|+++........-++.
T Consensus 85 ~-D~il~vvd~~~~~~~~~~~i~~~ 108 (292)
T PRK00089 85 V-DLVLFVVDADEKIGPGDEFILEK 108 (292)
T ss_pred C-CEEEEEEeCCCCCChhHHHHHHH
Confidence 5 99999999997555444443333
No 35
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6.8e-15 Score=134.45 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=74.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC------------------eeEEEEeCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY------------------LRYQVIDTPGILDRPF 230 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~------------------~~~~liDTpG~~~~~~ 230 (275)
.++++||.||||||||+|+||...+++++|||||.+++.|.+.+.+ ..+.++|.+|+..+..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4799999999999999999999999999999999999999876543 2578999999999887
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
..+...-+ -+.-+++. |+|++|+|+++.
T Consensus 83 ~GeGLGNk-FL~~IRev-daI~hVVr~f~d 110 (372)
T COG0012 83 KGEGLGNK-FLDNIREV-DAIIHVVRCFGD 110 (372)
T ss_pred cCCCcchH-HHHhhhhc-CeEEEEEEecCC
Confidence 66544322 25556666 999999999854
No 36
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.56 E-value=3.5e-14 Score=135.71 Aligned_cols=89 Identities=30% Similarity=0.352 Sum_probs=72.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHH----HHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM----CSIT 242 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~----~~~~ 242 (275)
..+|+++|+||||||||+|+|++.+. .++++|+||.+.....+.+++..+.+|||||+.+ +. +.++. .+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~~---~~ie~~gi~~~~~ 290 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TD---DEVEKIGIERSRE 290 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-Cc---cHHHHHHHHHHHH
Confidence 46899999999999999999999875 4889999999999999999999999999999864 21 22332 2444
Q ss_pred HHHhccceeEEEEeCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~ 261 (275)
.+... |++++|+|++++.
T Consensus 291 ~~~~a-D~il~VvD~s~~~ 308 (449)
T PRK05291 291 AIEEA-DLVLLVLDASEPL 308 (449)
T ss_pred HHHhC-CEEEEEecCCCCC
Confidence 55555 9999999998654
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=3.1e-14 Score=137.04 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..++|+++|.||||||||+|+|++... .+.+.|++|.+...+...+++..+.+|||||+..........+..++..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 346899999999999999999998774 4788999999999999999999999999999864332223344455566777
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
++ |++|||+|++++........++++
T Consensus 117 ~a-D~il~VvD~~~~~s~~~~~i~~~l 142 (472)
T PRK03003 117 TA-DAVLFVVDATVGATATDEAVARVL 142 (472)
T ss_pred hC-CEEEEEEECCCCCCHHHHHHHHHH
Confidence 76 999999999976544444444443
No 38
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=127.38 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=116.4
Q ss_pred CCchhhhhhhhcchhhHHhhcccchhhhhhh--hHHHHHhhhcccC-ccccchhhHHHHHhhhHHHHHHhhCc-hHHHHH
Q 035873 77 PFYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYG-DSLYCCKSLEVAALGRMCTVVKRIGP-SLAYLE 152 (275)
Q Consensus 77 pF~~el~~il~~~d~~k~~l~~v~~a~~~~~--~i~~~~~~~ik~~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~l~~l~ 152 (275)
+-|.-+++++-.....+++-.|+..|..-+. ++-.+|..+.+.. ....... ....-++...+.+.-.. ..+.|+
T Consensus 84 Dr~~~vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsg--es~id~d~~rllr~kea~lrKeL~ 161 (410)
T KOG0410|consen 84 DRRHTVLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSG--ESIIDRDIRRLLRIKEAQLRKELQ 161 (410)
T ss_pred cchhhHHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccCcc--chHhHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888877665 5566666655521 1121111 00011111111111111 112233
Q ss_pred HHHHHh-ccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-CeeEEEEeCCCCCCCCC
Q 035873 153 QIRQHM-ARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPF 230 (275)
Q Consensus 153 ~~~~~l-~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~ 230 (275)
.++++- .+........++|++|||+|+|||||+++||++.....+..|.|.++........ |..+.+.||-|++...+
T Consensus 162 ~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP 241 (410)
T KOG0410|consen 162 RVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP 241 (410)
T ss_pred HHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCc
Confidence 344332 2233334567899999999999999999999888888888899999987766654 66789999999997654
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~ 269 (275)
...-.-...++...++. |++|+|+|.|.| ++++|.
T Consensus 242 ~~LvaAF~ATLeeVaea-dlllHvvDiShP---~ae~q~ 276 (410)
T KOG0410|consen 242 IQLVAAFQATLEEVAEA-DLLLHVVDISHP---NAEEQR 276 (410)
T ss_pred HHHHHHHHHHHHHHhhc-ceEEEEeecCCc---cHHHHH
Confidence 32111122334444454 999999999965 455553
No 39
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=4.1e-14 Score=120.57 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=73.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCccccc--CCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH---
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQP--YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL--- 244 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~--~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l--- 244 (275)
+|+++|.||||||||+|+|+|.+..... .+++|.........+++.++.++||||+.+..... ..+.......+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~-~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP-EQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh-HHHHHHHHHHHHhc
Confidence 6899999999999999999998865333 45788888888888999999999999998865322 22222212222
Q ss_pred HhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 245 AHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
....|++|||+|+.. ........++.++
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~ 108 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQ 108 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHH
Confidence 223489999999986 4444444454443
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=3.9e-14 Score=134.78 Aligned_cols=103 Identities=22% Similarity=0.220 Sum_probs=79.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
++|+++|.||||||||+|+|++... .+.++|++|.+...+.+.+++..+.+|||||+.+........+..++..++.+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999998875 478899999999999999999999999999998633222333444555667776
Q ss_pred cceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 248 RSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 248 ~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
|++|||+|++++.........+++
T Consensus 82 -d~il~vvd~~~~~~~~~~~~~~~l 105 (435)
T PRK00093 82 -DVILFVVDGRAGLTPADEEIAKIL 105 (435)
T ss_pred -CEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999865433333333443
No 41
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.54 E-value=8.2e-14 Score=132.76 Aligned_cols=90 Identities=28% Similarity=0.389 Sum_probs=73.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHH----HHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM----CSI 241 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~----~~~ 241 (275)
...+|+++|.||||||||+|+|++... .++++|+||.+.....+.+++..+.+|||||+.+.. ..+|. .+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~----~~ie~~gi~~~~ 277 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA----DFVERLGIEKSF 277 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch----hHHHHHHHHHHH
Confidence 456899999999999999999998764 588999999999999999999999999999986432 22232 234
Q ss_pred HHHHhccceeEEEEeCCCCC
Q 035873 242 TALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~ 261 (275)
..++.. |++++|+|++.+.
T Consensus 278 ~~~~~a-D~il~V~D~s~~~ 296 (442)
T TIGR00450 278 KAIKQA-DLVIYVLDASQPL 296 (442)
T ss_pred HHHhhC-CEEEEEEECCCCC
Confidence 555555 9999999998654
No 42
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.53 E-value=2.9e-14 Score=117.84 Aligned_cols=87 Identities=30% Similarity=0.411 Sum_probs=67.3
Q ss_pred eeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcccee
Q 035873 173 ICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAV 251 (275)
Q Consensus 173 ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~i 251 (275)
++|.+|||||||+|+|++..+.+++++++|..+..+.+.++ +..+++|||||+.+......+.. ......+.. +|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~-~~~~~~~~~-~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLG-NQFLAHIRR-ADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCcc-HHHHHHHhc-cCEE
Confidence 57999999999999999988878899999999999988888 88999999999865332221111 112333444 4999
Q ss_pred EEEEeCCCCC
Q 035873 252 LFFLDISGSC 261 (275)
Q Consensus 252 l~viD~s~~~ 261 (275)
++|+|+++..
T Consensus 79 i~v~d~~~~~ 88 (176)
T cd01881 79 LHVVDASEDD 88 (176)
T ss_pred EEEEeccCCc
Confidence 9999998653
No 43
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=1.9e-13 Score=110.60 Aligned_cols=91 Identities=24% Similarity=0.244 Sum_probs=68.4
Q ss_pred EeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccce
Q 035873 172 LICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSA 250 (275)
Q Consensus 172 ~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (275)
+++|.+|||||||+|+|++.... .++++++|.+.......+.+..+.+|||||+.+........+.......++.. |+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~-d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEA-DV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC-CE
Confidence 47899999999999999988743 67788999988888888888899999999987644311122222333445555 99
Q ss_pred eEEEEeCCCCCCC
Q 035873 251 VLFFLDISGSCGY 263 (275)
Q Consensus 251 il~viD~s~~~g~ 263 (275)
+++|+|++.....
T Consensus 80 ii~v~d~~~~~~~ 92 (157)
T cd01894 80 ILFVVDGREGLTP 92 (157)
T ss_pred EEEEEeccccCCc
Confidence 9999999864433
No 44
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.50 E-value=3.6e-13 Score=108.75 Aligned_cols=92 Identities=30% Similarity=0.302 Sum_probs=70.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
.+|+++|.+|+|||||+|+|++... .+.+.+++|.......+.+.+.++.+|||||+.+................+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 3799999999999999999998875 467889999998888888888899999999987654322112122333445544
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|++.+.
T Consensus 82 -~~~v~v~d~~~~~ 94 (157)
T cd04164 82 -DLVLFVIDASRGL 94 (157)
T ss_pred -CEEEEEEECCCCC
Confidence 9999999999643
No 45
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=2.8e-13 Score=122.37 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=69.7
Q ss_pred HHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCch
Q 035873 155 RQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDH 233 (275)
Q Consensus 155 ~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 233 (275)
.+.+.+++..+....+|+++|.+||||||++|+|+|.++. ++++..+|.........+++.++.||||||+.+... .
T Consensus 25 ~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~--~ 102 (313)
T TIGR00991 25 LELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY--I 102 (313)
T ss_pred HHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH--H
Confidence 3444566666677889999999999999999999998864 566665555555555567889999999999987531 1
Q ss_pred hHHHHHHHHHHH-----hccceeEEEEeCC
Q 035873 234 NIIEMCSITALA-----HLRSAVLFFLDIS 258 (275)
Q Consensus 234 ~~~e~~~~~~l~-----~~~d~il~viD~s 258 (275)
+ ......++ ..+|++|||.+.+
T Consensus 103 ~---e~~~~~ik~~l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 103 N---DQAVNIIKRFLLGKTIDVLLYVDRLD 129 (313)
T ss_pred H---HHHHHHHHHHhhcCCCCEEEEEeccC
Confidence 1 11122222 2358999996554
No 46
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.6e-13 Score=133.41 Aligned_cols=89 Identities=22% Similarity=0.250 Sum_probs=76.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH-hc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA-HL 247 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~-~~ 247 (275)
.+|+++|.||||||||+|+|||.+..++++|++|.+-..|.+.+.+.+++++|.||..+=... ..-|+.+..++. +.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~--S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY--SEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC--CchHHHHHHHHhcCC
Confidence 369999999999999999999999999999999999999999999999999999998753322 333566777776 44
Q ss_pred cceeEEEEeCCC
Q 035873 248 RSAVLFFLDISG 259 (275)
Q Consensus 248 ~d~il~viD~s~ 259 (275)
+|+|+-|+|+++
T Consensus 82 ~D~ivnVvDAtn 93 (653)
T COG0370 82 PDLIVNVVDATN 93 (653)
T ss_pred CCEEEEEcccch
Confidence 699999999983
No 47
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.48 E-value=3.2e-13 Score=135.92 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=75.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..++|+++|.||||||||+|+|++.+. .+.+.|++|.+.......|++..+.+|||||+..........+..++..+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 347899999999999999999998875 4788999999999988899999999999999875333323334455556666
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.+ |++|||+|++...
T Consensus 354 ~a-D~iL~VvDa~~~~ 368 (712)
T PRK09518 354 LA-DAVVFVVDGQVGL 368 (712)
T ss_pred hC-CEEEEEEECCCCC
Confidence 66 9999999998543
No 48
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=2.1e-14 Score=124.44 Aligned_cols=94 Identities=27% Similarity=0.422 Sum_probs=80.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.+..+|+++|+|.||||||+.++++.+.+.+.|.|||...+.|.+.+++..+|+.|.||++++....+... ++ +.+.+
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG-RQ-viavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG-RQ-VIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC-ce-EEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999876654443 22 34455
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
..+|+||+|+|++...
T Consensus 138 rtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 138 RTADLILMVLDATKSE 153 (364)
T ss_pred ecccEEEEEecCCcch
Confidence 5669999999998653
No 49
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.47 E-value=7.1e-13 Score=107.45 Aligned_cols=99 Identities=26% Similarity=0.309 Sum_probs=69.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
..+|+++|.+|+|||||+|+|++..+. +.+.+.+|...........+..+.+|||||+..........+.......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999988754 5566677777766666666678999999998754332222222222333444
Q ss_pred ccceeEEEEeCCCCCCCCHHH
Q 035873 247 LRSAVLFFLDISGSCGYSIAQ 267 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~ 267 (275)
. |++++|+|++.+..+....
T Consensus 83 ~-d~i~~v~d~~~~~~~~~~~ 102 (168)
T cd04163 83 V-DLVLFVVDASEPIGEGDEF 102 (168)
T ss_pred C-CEEEEEEECCCccCchHHH
Confidence 4 9999999999764444333
No 50
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.47 E-value=3e-13 Score=120.23 Aligned_cols=93 Identities=23% Similarity=0.323 Sum_probs=77.5
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHH----H
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMC----S 240 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~----~ 240 (275)
.....|+++|.||||||||.|.+.|.++. ++..+.||+..+.|.++.+..++.++||||++.....-+...++. .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 34568999999999999999999999987 888999999999999999999999999999998765544444433 2
Q ss_pred HHHHHhccceeEEEEeCCC
Q 035873 241 ITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~ 259 (275)
+.++.+. |+|+.|+|++.
T Consensus 150 ~~a~q~A-D~vvVv~Das~ 167 (379)
T KOG1423|consen 150 RDAAQNA-DCVVVVVDASA 167 (379)
T ss_pred HHHHhhC-CEEEEEEeccC
Confidence 3455554 99999999995
No 51
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.46 E-value=1.1e-12 Score=107.52 Aligned_cols=95 Identities=28% Similarity=0.317 Sum_probs=71.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHH----HHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIE----MCSIT 242 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e----~~~~~ 242 (275)
+.+|+++|.+|+|||||+|+|++... ...+.+++|.......+..++..+.+|||||+.+..... ..++ .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~-~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVE-EGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchh-ccHHHHHHHHHHH
Confidence 45799999999999999999998764 367788899988888888888899999999987653211 1112 22233
Q ss_pred HHHhccceeEEEEeCCCCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSCGYS 264 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~g~~ 264 (275)
.+... |++++|+|++.+....
T Consensus 81 ~~~~~-d~vi~v~d~~~~~~~~ 101 (174)
T cd01895 81 AIERA-DVVLLVIDATEGITEQ 101 (174)
T ss_pred HHhhc-CeEEEEEeCCCCcchh
Confidence 44444 9999999998765443
No 52
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.45 E-value=4.4e-13 Score=120.54 Aligned_cols=93 Identities=20% Similarity=0.299 Sum_probs=77.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC-----------------eeEEEEeCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-----------------LRYQVIDTPGILDRP 229 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~ 229 (275)
...++++||.|||||||++|+||......++|||+|.++..+.+...+ ..+++.|++|+..+.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 445899999999999999999999999999999999999999887654 357899999999988
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
.......-+. +.-++|+ |++++|+|+.+..
T Consensus 99 s~G~GLGN~F-Ls~iR~v-DaifhVVr~f~d~ 128 (391)
T KOG1491|consen 99 SAGEGLGNKF-LSHIRHV-DAIFHVVRAFEDT 128 (391)
T ss_pred ccCcCchHHH-HHhhhhc-cceeEEEEecCcc
Confidence 7765544332 5566766 9999999998643
No 53
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=8.4e-13 Score=127.09 Aligned_cols=95 Identities=22% Similarity=0.267 Sum_probs=73.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCch--hHHH-HHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDH--NIIE-MCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~~e-~~~~~ 242 (275)
...+|+++|.||||||||+|+|++... .++++|+||.++....+.+++..+.+|||||+........ ..+. ..+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 567999999999999999999999875 4788999999999888889999999999999865432211 1111 11233
Q ss_pred HHHhccceeEEEEeCCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~g 262 (275)
+++.+ |++++|+|++++..
T Consensus 290 ~i~~a-d~vilV~Da~~~~s 308 (472)
T PRK03003 290 AIEAA-EVAVVLIDASEPIS 308 (472)
T ss_pred HHhcC-CEEEEEEeCCCCCC
Confidence 45555 99999999997543
No 54
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.44 E-value=9.7e-13 Score=107.28 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=59.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEec-CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.|+++|.+|||||||+|+|++.... ....+++|.+.....+.+. +..+++|||||.. .........++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~--------~~~~~~~~~~~ 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE--------KFIKNMLAGAG 73 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH--------HHHHHHHhhhh
Confidence 6899999999999999999975432 2224567777766667776 7789999999952 11122233344
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
. +|++++|+|+++..
T Consensus 74 ~-ad~ii~V~d~~~~~ 88 (164)
T cd04171 74 G-IDLVLLVVAADEGI 88 (164)
T ss_pred c-CCEEEEEEECCCCc
Confidence 4 49999999998643
No 55
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.44 E-value=8.3e-13 Score=122.15 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=72.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCe-----------------eEEEEeCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRPF 230 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~~ 230 (275)
.++++||.||+|||||+|+||+..+ .+++|||||..++.|.+.+.+. .+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 4789999999999999999999999 8999999999999999988763 589999999998765
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
...... ..-+..++++ |++++|+|+.+
T Consensus 83 ~g~Glg-n~fL~~ir~~-d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLG-NQFLANIREV-DIIQHVVRCFE 109 (368)
T ss_pred cccCcc-hHHHHHHHhC-CEEEEEEeCCC
Confidence 432211 1224555665 99999999974
No 56
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.44 E-value=5.2e-13 Score=108.36 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=66.2
Q ss_pred eeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC-chhHHHHHHHHHHH-hccce
Q 035873 173 ICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DHNIIEMCSITALA-HLRSA 250 (275)
Q Consensus 173 ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~e~~~~~~l~-~~~d~ 250 (275)
++|.+|||||||+|++++....++++|++|.+.....+.+++..+.+|||||+.+.... ....+ ....+. +..|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~---~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKV---ARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHH---HHHHhcCCCCcE
Confidence 57999999999999999988778889999999998889998889999999998653321 11112 223333 34599
Q ss_pred eEEEEeCCCC
Q 035873 251 VLFFLDISGS 260 (275)
Q Consensus 251 il~viD~s~~ 260 (275)
+++|+|++..
T Consensus 78 vi~v~d~~~~ 87 (158)
T cd01879 78 IVNVVDATNL 87 (158)
T ss_pred EEEEeeCCcc
Confidence 9999999863
No 57
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.43 E-value=1.2e-12 Score=115.99 Aligned_cols=94 Identities=22% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchh--HHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHN--IIEMCSIT 242 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~--~~e~~~~~ 242 (275)
....+|+++|.+|||||||+|+|+|... .+++++.+|.........+++..+.+|||||+.+....... .+......
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 4567999999999999999999999875 47777778888877777788899999999999876432111 11111122
Q ss_pred HHHh-ccceeEEEEeCCC
Q 035873 243 ALAH-LRSAVLFFLDISG 259 (275)
Q Consensus 243 ~l~~-~~d~il~viD~s~ 259 (275)
.+.. ..|++|||...+.
T Consensus 109 ~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHhccCCCEEEEEEcCCC
Confidence 3332 2488999976664
No 58
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.43 E-value=1.3e-12 Score=106.62 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=64.6
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|+|++.+......|+++.+.....+.+++. .+++|||||.. .........+++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~~~~ 73 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE--------RFRSLIPSYIRDS 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHhccC
Confidence 6899999999999999999999888777888888887777777664 57899999932 1222223345554
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|++++.
T Consensus 74 -~~ii~v~d~~~~~ 86 (161)
T cd01861 74 -SVAVVVYDITNRQ 86 (161)
T ss_pred -CEEEEEEECcCHH
Confidence 9999999998654
No 59
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.42 E-value=1.7e-13 Score=125.60 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCC---chhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCcc--ccchh
Q 035873 53 YTQQNFFEKLSTIIDEFPRLDDIHPF---YGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDS--LYCCK 127 (275)
Q Consensus 53 ~~~~~~~~~l~~i~~~fp~i~~l~pF---~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~--~~~~~ 127 (275)
.+...+.+.+...-.-++.+|-..|. -.+|.++.-+.+. +..+|+++.......+.|...+..... .....
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~----i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~ 98 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPK----LLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVS 98 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCc----EEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEE
Confidence 33344444444443434444555454 3445555555554 778999999998888889887764321 11111
Q ss_pred hHHHHHhhhHHHHHHhhCchHHHH-HHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccce
Q 035873 128 SLEVAALGRMCTVVKRIGPSLAYL-EQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSL 205 (275)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~ 205 (275)
.........+. .....+ .+..+.+.+. .......+++++|+||||||||||+|.+.+. .+++.|++|++.
T Consensus 99 ~~~~~~~~~i~-------~~~~~~~~~~i~~~~~~-~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~ 170 (322)
T COG1161 99 AKSRQGGKKIR-------KALEKLSEEKIKRLKKK-GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGI 170 (322)
T ss_pred eecccCccchH-------HHHHHHHHHHHHHHhhc-CCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecce
Confidence 00000111111 000111 0111122111 2223456799999999999999999999885 699999999998
Q ss_pred EEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 206 FVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 206 ~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
+.-.+. ..+.++||||++.+....
T Consensus 171 q~i~~~---~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 171 QWIKLD---DGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred EEEEcC---CCeEEecCCCcCCCCccc
Confidence 866654 458999999999776554
No 60
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.41 E-value=2.1e-12 Score=106.04 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=61.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec---CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
++|+++|.+|+|||||+|+|++..+.....+++|.+.....+.+. +..+.+|||||... ........+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~~~~~~~~ 72 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA--------FTNMRARGAS 72 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH--------HHHHHHHHHh
Confidence 469999999999999999999887665556667776655555554 56899999999531 1111122334
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
. +|++++|+|+++..
T Consensus 73 ~-~d~il~v~d~~~~~ 87 (168)
T cd01887 73 L-TDIAILVVAADDGV 87 (168)
T ss_pred h-cCEEEEEEECCCCc
Confidence 3 49999999999654
No 61
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=2.7e-12 Score=122.17 Aligned_cols=94 Identities=28% Similarity=0.318 Sum_probs=74.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHH----HHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIE----MCSI 241 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e----~~~~ 241 (275)
...+|+++|.||+|||||+|+|++.. ..+++.++||.+.....+.+++.++.+|||||+.+..... ..+| ..+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~-~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVT-EGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchh-hHHHHHHHHHHH
Confidence 46799999999999999999999877 4588899999999988888888999999999987654332 1223 2234
Q ss_pred HHHHhccceeEEEEeCCCCCC
Q 035873 242 TALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~g 262 (275)
.+++.+ |++|+|+|++++..
T Consensus 251 ~~~~~a-d~~ilViD~~~~~~ 270 (435)
T PRK00093 251 KAIERA-DVVLLVIDATEGIT 270 (435)
T ss_pred HHHHHC-CEEEEEEeCCCCCC
Confidence 455555 99999999996543
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.40 E-value=2.3e-12 Score=110.19 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=62.3
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+........|+++.+.....+.+++. .+++|||||..+.+.....++.......++..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999987754444555554554445566664 57899999976543222223222233445554
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++++|+|++++
T Consensus 82 -d~iilv~D~~~~ 93 (198)
T cd04142 82 -RAFILVYDICSP 93 (198)
T ss_pred -CEEEEEEECCCH
Confidence 999999999964
No 63
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=3.5e-12 Score=121.06 Aligned_cols=93 Identities=27% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHH----HHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM----CSI 241 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~----~~~ 241 (275)
...+|+++|.||+|||||+|+|++... .+++.++||.+.....+.+++..+.+|||||+.+..... ..+|. .+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~-~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVT-EGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccch-hhHHHHHHHHHH
Confidence 457899999999999999999998764 478899999999988888888899999999987654322 12232 234
Q ss_pred HHHHhccceeEEEEeCCCCC
Q 035873 242 TALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~ 261 (275)
.+++.+ |++++|+|++++.
T Consensus 250 ~~~~~a-d~~ilV~D~~~~~ 268 (429)
T TIGR03594 250 KAIERA-DVVLLVLDATEGI 268 (429)
T ss_pred HHHHhC-CEEEEEEECCCCc
Confidence 456665 9999999999653
No 64
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.39 E-value=1.6e-12 Score=118.90 Aligned_cols=201 Identities=18% Similarity=0.210 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCcccc
Q 035873 45 RFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLY 124 (275)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~ 124 (275)
+.+..++.++.+.|.+.++++.. ...+|+ +|+++|.+.|+..|. ..+.+...++.+.+.. .. ....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~--~~~~~l~~~L~~~dv------~~~~a~~i~~~~~~~~----~~-~~~~ 83 (318)
T PRK10416 18 ERLKKGLSKTRENFGEGINGLFA-KKKIDE--DLLEELEELLIEADV------GVETTEEIIEELRERV----KR-KNLK 83 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHH----hc-cCCC
Confidence 44777889999999999999997 567887 799999999999885 2223333333333322 11 1111
Q ss_pred chhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhc------CCcccccC
Q 035873 125 CCKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITR------ADVDVQPY 198 (275)
Q Consensus 125 ~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~ 198 (275)
....++..+...+...+.... ..+......+..++++|++|+||||++.+|++ .++.+...
T Consensus 84 ~~~~~~~~l~~~l~~~l~~~~-------------~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 84 DPEELKELLKEELAEILEPVE-------------KPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CHHHHHHHHHHHHHHHhCcCC-------------ccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 122223222222222211000 00111112456899999999999999998873 23332222
Q ss_pred CCccc-----------ceEEEEEE-------------------ecCeeEEEEeCCCCCCCCCCchhHHHHHHHH---HHH
Q 035873 199 AFTTK-----------SLFVGHTD-------------------YKYLRYQVIDTPGILDRPFEDHNIIEMCSIT---ALA 245 (275)
Q Consensus 199 ~~tT~-----------~~~~~~~~-------------------~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~---~l~ 245 (275)
+.... ......+. ..+.++.+|||||......+.+.++.+.... .+.
T Consensus 151 D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~ 230 (318)
T PRK10416 151 DTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADP 230 (318)
T ss_pred CccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcC
Confidence 11000 00001110 1235789999999988776666666543221 123
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
..++-+++|+|++ +|++...|..-|.+
T Consensus 231 ~~p~~~~LVl~a~--~g~~~~~~a~~f~~ 257 (318)
T PRK10416 231 DAPHEVLLVLDAT--TGQNALSQAKAFHE 257 (318)
T ss_pred CCCceEEEEEECC--CChHHHHHHHHHHh
Confidence 3467899999999 78888888887754
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=3.8e-12 Score=128.19 Aligned_cols=95 Identities=26% Similarity=0.309 Sum_probs=74.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchh--HHH-HHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHN--IIE-MCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~--~~e-~~~~~ 242 (275)
..++|+++|.||||||||+|+|++.+. .++++|+||.+.....+.+++..+.+|||||+.+....... .+. ..+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 457999999999999999999999885 47889999999999888999999999999998754433211 111 12334
Q ss_pred HHHhccceeEEEEeCCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~g 262 (275)
+++++ |++++|+|++++..
T Consensus 529 ~i~~a-dvvilViDat~~~s 547 (712)
T PRK09518 529 AIERS-ELALFLFDASQPIS 547 (712)
T ss_pred HhhcC-CEEEEEEECCCCCC
Confidence 45555 99999999996543
No 66
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.36 E-value=2.6e-12 Score=111.13 Aligned_cols=102 Identities=23% Similarity=0.181 Sum_probs=64.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccc--cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHH--HHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQ--PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMC--SITALA 245 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~--~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~--~~~~l~ 245 (275)
+|+++|.+|+||||++|.|+|...... .....|.........+++..+.||||||+.+.........+.. ++....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 689999999999999999999986522 2345677887888889999999999999987665432222211 112223
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
..++++|||++.+ ........-++.+
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l 107 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELL 107 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHH
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHH
Confidence 3358999999998 4443344444443
No 67
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.36 E-value=3.4e-12 Score=128.88 Aligned_cols=91 Identities=21% Similarity=0.180 Sum_probs=72.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC-c-hhHHHHHHHHHHH-
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-D-HNIIEMCSITALA- 245 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~-~~~~e~~~~~~l~- 245 (275)
.+|+++|.||||||||+|+|+|.+..++++|++|.+...+.+.+++.++.++||||+.+-... . ...-|+.+...+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 479999999999999999999999899999999999999999998999999999998753221 1 1112333333332
Q ss_pred hccceeEEEEeCCC
Q 035873 246 HLRSAVLFFLDISG 259 (275)
Q Consensus 246 ~~~d~il~viD~s~ 259 (275)
+.+|++++|+|+++
T Consensus 84 ~~aD~vI~VvDat~ 97 (772)
T PRK09554 84 GDADLLINVVDASN 97 (772)
T ss_pred cCCCEEEEEecCCc
Confidence 34599999999985
No 68
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.35 E-value=1.1e-11 Score=103.89 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC--cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC--chhHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD--VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DHNIIEMCSI 241 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~e~~~~ 241 (275)
.+.++|+++|.+|+|||||+|+|.+.. ..+++.+++|.+..... ++ ..+.+|||||+...... .+..+.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 356789999999999999999999875 34677888887765433 23 47999999998654322 1222222222
Q ss_pred HHHHhc--cceeEEEEeCCCCCCCC
Q 035873 242 TALAHL--RSAVLFFLDISGSCGYS 264 (275)
Q Consensus 242 ~~l~~~--~d~il~viD~s~~~g~~ 264 (275)
..+++. .|++++|+|++.+....
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~ 117 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKEL 117 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHH
Confidence 344433 37899999998654433
No 69
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.35 E-value=6.3e-12 Score=113.60 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=52.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
....+++++|.||||||||+|+|++.+. .+++.|++|++.+... + +..+.++||||+.......
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~~~~~ 183 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK--L-GKGLELLDTPGILWPKLED 183 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE--e-CCcEEEEECCCcCCCCCCc
Confidence 3456899999999999999999999886 6999999999875433 2 3578999999998765443
No 70
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1e-11 Score=105.03 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=76.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC--cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCC--CCCchhHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD--VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR--PFEDHNIIEMCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~e~~~~~ 242 (275)
..+.|+++|.+|||||||||+|++.+ +.++..||.|+.++.-.+ + ..+.++|.||+.=. +.+.+..+...-..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~-~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--D-DELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--c-CcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987 679999999988875543 2 23889999998643 33444555544445
Q ss_pred HHHhcc--ceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 243 ALAHLR--SAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 243 ~l~~~~--d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.+..-. .++++++|+.........+-++++.+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~ 133 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE 133 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 554433 56999999986655545555555543
No 71
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.33 E-value=1.1e-11 Score=111.38 Aligned_cols=64 Identities=31% Similarity=0.350 Sum_probs=51.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
....+++++|+||||||||+|+|++.+ ..+++.|++|+..+...+ +..++++||||++......
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCc
Confidence 345689999999999999999999887 468999999998764333 3478999999998765444
No 72
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.32 E-value=1.3e-11 Score=101.47 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=59.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+........|+.+.+.....+..++. .+++|||||... ........++.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~ 74 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER--------FRTITSSYYRG 74 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh--------HHHHHHHHhCc
Confidence 57999999999999999999987765554555554555555655554 679999999431 22222233444
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
+|++++|+|+++..
T Consensus 75 -~~~ii~v~d~~~~~ 88 (166)
T cd01869 75 -AHGIIIVYDVTDQE 88 (166)
T ss_pred -CCEEEEEEECcCHH
Confidence 49999999998643
No 73
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.32 E-value=1.1e-11 Score=101.23 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=61.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+........++.+.......+.+++ .++++|||||.. .........+++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~~ 73 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE--------RFRSITSSYYRGA 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH--------HHHHHHHHHhCCC
Confidence 689999999999999999998877655555555555555556655 467899999932 2333334455555
Q ss_pred cceeEEEEeCCCCCCC
Q 035873 248 RSAVLFFLDISGSCGY 263 (275)
Q Consensus 248 ~d~il~viD~s~~~g~ 263 (275)
|++++|+|++++...
T Consensus 74 -d~~ilv~d~~~~~s~ 88 (164)
T smart00175 74 -VGALLVYDITNRESF 88 (164)
T ss_pred -CEEEEEEECCCHHHH
Confidence 999999999865433
No 74
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.32 E-value=1.7e-11 Score=100.64 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=62.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+.+......|+++.+.....+..++. .+++|||||.. .........++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~ 74 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE--------RYRAITSAYYR 74 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH--------HHHHHHHHHHC
Confidence 358999999999999999999988876666676666666666666654 67899999953 12222233444
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. +++++|+|+++..
T Consensus 75 ~~-~~~i~v~d~~~~~ 89 (165)
T cd01868 75 GA-VGALLVYDITKKQ 89 (165)
T ss_pred CC-CEEEEEEECcCHH
Confidence 44 8999999998643
No 75
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.31 E-value=1.7e-11 Score=101.40 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=58.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+........++.+.......+.+++ ..+.+|||||.. .+.......++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~ 75 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE--------SFRSITRSYYR 75 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHhc
Confidence 35899999999999999999998876544444444444444455554 467999999932 22222334455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 76 ~~-d~il~v~d~~~~ 89 (168)
T cd01866 76 GA-AGALLVYDITRR 89 (168)
T ss_pred cC-CEEEEEEECCCH
Confidence 44 999999999854
No 76
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.31 E-value=3.3e-11 Score=101.76 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC--cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC--chhHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD--VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DHNIIEMCSI 241 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~e~~~~ 241 (275)
...++|+++|.+|||||||+|+|++.. ..+++.+++|....... + +.++.+|||||+...... .+..+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 356789999999999999999999865 34677777776654332 2 468999999997654322 1233333333
Q ss_pred HHHHhcc--ceeEEEEeCCCCCC
Q 035873 242 TALAHLR--SAVLFFLDISGSCG 262 (275)
Q Consensus 242 ~~l~~~~--d~il~viD~s~~~g 262 (275)
..+.... +++++|+|++.+..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~ 121 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLK 121 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCC
Confidence 3444432 57889999886543
No 77
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.31 E-value=2.1e-11 Score=100.59 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=58.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+.+......|+.+.......+.+++. .+++|||||.. .........++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~ 74 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE--------RFRTITTAYYR 74 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH--------HHHHHHHHHhC
Confidence 468999999999999999999988765444444444444445555554 67899999942 12222234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
++ |++++|+|+++.
T Consensus 75 ~a-d~~i~v~d~~~~ 88 (167)
T cd01867 75 GA-MGIILVYDITDE 88 (167)
T ss_pred CC-CEEEEEEECcCH
Confidence 54 999999999864
No 78
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.30 E-value=1.5e-11 Score=101.00 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=58.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc----cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD----VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~----v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
+|+++|.+|||||||+|+|++.... ......+|.+...+.+.+++..+++|||||..+ +.......++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES--------LRSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh--------hHHHHHHHhC
Confidence 4789999999999999999875432 112234566777777888889999999999642 1112223344
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |+++||+|+++.
T Consensus 73 ~~-~~~v~vvd~~~~ 86 (167)
T cd04160 73 EC-HAIIYVIDSTDR 86 (167)
T ss_pred CC-CEEEEEEECchH
Confidence 44 999999999864
No 79
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.30 E-value=1.4e-11 Score=106.12 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=62.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccc-------------------------------cCCCcccceEEEEEEecCeeEE
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQ-------------------------------PYAFTTKSLFVGHTDYKYLRYQ 218 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~-------------------------------~~~~tT~~~~~~~~~~~~~~~~ 218 (275)
+|+++|.+|+|||||+++|....-.+. ...++|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999974321111 1267788888888889999999
Q ss_pred EEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 219 VIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 219 liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
++||||.. .+......+++.. |++|+|+|++.+..
T Consensus 81 liDTpG~~--------~~~~~~~~~~~~a-d~~llVvD~~~~~~ 115 (208)
T cd04166 81 IADTPGHE--------QYTRNMVTGASTA-DLAILLVDARKGVL 115 (208)
T ss_pred EEECCcHH--------HHHHHHHHhhhhC-CEEEEEEECCCCcc
Confidence 99999953 1222233455554 99999999996543
No 80
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.30 E-value=1.4e-11 Score=100.38 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=56.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
.|+++|.+|||||||+++|++.......+. .|.+.....+.+.+..+++|||||..+ ........+++. |
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~~-d 70 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGK--------YRGLWEHYYKNI-Q 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHh--------hHHHHHHHHccC-C
Confidence 378999999999999999998754333332 233333444556677899999999542 111223445555 9
Q ss_pred eeEEEEeCCCCCC
Q 035873 250 AVLFFLDISGSCG 262 (275)
Q Consensus 250 ~il~viD~s~~~g 262 (275)
+++||+|+++...
T Consensus 71 ~ii~v~D~~~~~~ 83 (162)
T cd04157 71 GIIFVIDSSDRLR 83 (162)
T ss_pred EEEEEEeCCcHHH
Confidence 9999999996543
No 81
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.29 E-value=1.7e-11 Score=98.55 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=59.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|++.+........++.+.......+... ...+.+|||||.. .........+++.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~~ 73 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE--------RFRSITPSYYRGA 73 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH--------HHHHHHHHHhcCC
Confidence 68999999999999999999888765555544444444444443 3578999999953 2222344556665
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|++++.
T Consensus 74 -d~ii~v~d~~~~~ 86 (159)
T cd00154 74 -HGAILVYDITNRE 86 (159)
T ss_pred -CEEEEEEECCCHH
Confidence 9999999998643
No 82
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.29 E-value=5.3e-12 Score=105.79 Aligned_cols=57 Identities=33% Similarity=0.487 Sum_probs=48.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
....+++++|.||||||||+|+|++.+. .+++.|++|++.+...+ +.+++++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3456899999999999999999999876 69999999998765543 357999999996
No 83
>PRK04213 GTP-binding protein; Provisional
Probab=99.29 E-value=1.6e-11 Score=104.43 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=60.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc---hhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED---HNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~---~~~~e~~~~~~ 243 (275)
..++|+++|.+|||||||+|+|++....++..|++|..... +.++ .+++|||||+.....-. ...+.......
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 35689999999999999999999988777788888876543 2333 68999999973322111 22222222223
Q ss_pred HH---hccceeEEEEeCCC
Q 035873 244 LA---HLRSAVLFFLDISG 259 (275)
Q Consensus 244 l~---~~~d~il~viD~s~ 259 (275)
+. +..+++++|+|++.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHhhhhhheEEEEEEeCcc
Confidence 33 22378999999974
No 84
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=3e-11 Score=99.32 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=57.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+........++.+.+.....+.+++ ..+++|||||.. .+.......++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~ 74 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE--------RFRTITQSYYR 74 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH--------HHHHHHHHHhc
Confidence 35899999999999999999987664332223333344445566666 367999999932 22223334455
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. |++++|+|++++.
T Consensus 75 ~~-d~~llv~d~~~~~ 89 (165)
T cd01864 75 SA-NGAIIAYDITRRS 89 (165)
T ss_pred cC-CEEEEEEECcCHH
Confidence 44 9999999999654
No 85
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.28 E-value=3.5e-11 Score=100.31 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=65.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccc----------------cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCch
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQ----------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDH 233 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~----------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 233 (275)
+|+++|.+|+|||||+|+|++...... ...++|.......+.+.+.++.+|||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 489999999999999999987654322 1234566666666677778999999999642
Q ss_pred hHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 234 NIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 234 ~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
.......+++.. |++++|+|++.+......+.+..
T Consensus 75 --~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~ 109 (189)
T cd00881 75 --FSSEVIRGLSVS-DGAILVVDANEGVQPQTREHLRI 109 (189)
T ss_pred --HHHHHHHHHHhc-CEEEEEEECCCCCcHHHHHHHHH
Confidence 122334555555 99999999997655444444433
No 86
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.28 E-value=3.6e-11 Score=98.19 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=55.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|++.+........|+.+.+.....+..++ ..+++|||||.. .........++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~~~- 72 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP--------EYLEVRNEFYKD- 72 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH--------HHHHHHHHHhcc-
Confidence 689999999999999999998875443334333333334444444 467899999952 122222233444
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
+|++++|+|++++.
T Consensus 73 ~d~~ilv~D~~~~~ 86 (168)
T cd04119 73 TQGVLLVYDVTDRQ 86 (168)
T ss_pred CCEEEEEEECCCHH
Confidence 49999999999653
No 87
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=1.6e-11 Score=108.10 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=68.0
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
...+..|++.|.+|+|||||||+|.+.... ++..+-+|.....-...+++..+.+|||||+.+....+ .+.....+..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D-~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD-AEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh-HHHHHHHHHH
Confidence 345667889999999999999999976654 44344344333333345567788999999999876544 2333334455
Q ss_pred HHhccceeEEEEeCCCCCCC
Q 035873 244 LAHLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 244 l~~~~d~il~viD~s~~~g~ 263 (275)
+... |++|+++|+.++.-.
T Consensus 115 l~~~-DLvL~l~~~~draL~ 133 (296)
T COG3596 115 LPKL-DLVLWLIKADDRALG 133 (296)
T ss_pred hhhc-cEEEEeccCCCcccc
Confidence 6666 999999999876533
No 88
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.26 E-value=5e-11 Score=97.35 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=58.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+... ...++.|+.........+++. .+++|||||..+ ++......++.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 73 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE--------FSAMREQYMRT 73 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcc--------hhHHHHHHHhh
Confidence 4799999999999999999987654 445555555555555556554 578999999542 11122234455
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|+++..
T Consensus 74 ~-~~~ilv~d~~~~~ 87 (164)
T cd04145 74 G-EGFLLVFSVTDRG 87 (164)
T ss_pred C-CEEEEEEECCCHH
Confidence 4 9999999999643
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.26 E-value=5.1e-11 Score=97.34 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=57.3
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+++|.+.+......+..+.......+..++ ..+++|||||.. .+.......++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~~~~~- 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE--------RFRSVTRSYYRG- 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH--------HHHHhHHHHhcC-
Confidence 689999999999999999998776544444444334334444444 467899999953 222222344444
Q ss_pred cceeEEEEeCCCCCC
Q 035873 248 RSAVLFFLDISGSCG 262 (275)
Q Consensus 248 ~d~il~viD~s~~~g 262 (275)
+|++++|+|++++..
T Consensus 73 ~~~~i~v~d~~~~~s 87 (161)
T cd04113 73 AAGALLVYDITNRTS 87 (161)
T ss_pred CCEEEEEEECCCHHH
Confidence 499999999997543
No 90
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.25 E-value=5.1e-11 Score=98.02 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=61.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++++........++.+.+.....+.+.+. .+.+|||||.. .........+.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 78 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE--------RFRSITQSYYR 78 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHhc
Confidence 468999999999999999999977665555555555666666777664 57889999943 22222234555
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|+++.
T Consensus 79 ~~-d~~i~v~d~~~~ 92 (169)
T cd04114 79 SA-NALILTYDITCE 92 (169)
T ss_pred CC-CEEEEEEECcCH
Confidence 54 999999999854
No 91
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.25 E-value=5.9e-11 Score=98.37 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=56.6
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||++++++... ..+ ..|.+.....+.+++..+++|||||.. .........++.. |
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~-~~t~g~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~a-~ 68 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKV-APTVGFTPTKLRLDKYEVCIFDLGGGA--------NFRGIWVNYYAEA-H 68 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--ccc-cCcccceEEEEEECCEEEEEEECCCcH--------HHHHHHHHHHcCC-C
Confidence 489999999999999999997622 111 224444555667778899999999942 1222233455554 9
Q ss_pred eeEEEEeCCCCC
Q 035873 250 AVLFFLDISGSC 261 (275)
Q Consensus 250 ~il~viD~s~~~ 261 (275)
+++||+|+++..
T Consensus 69 ~ii~V~D~s~~~ 80 (167)
T cd04161 69 GLVFVVDSSDDD 80 (167)
T ss_pred EEEEEEECCchh
Confidence 999999999754
No 92
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.25 E-value=2.8e-11 Score=119.27 Aligned_cols=83 Identities=25% Similarity=0.271 Sum_probs=65.6
Q ss_pred ccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH-hccceeEE
Q 035873 175 WYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA-HLRSAVLF 253 (275)
Q Consensus 175 G~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~-~~~d~il~ 253 (275)
|.||||||||+|+|+|.+..++++|++|.+...+.+.+++.++.+|||||..+-.... .-|..+...+. +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s--~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFS--LEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccc--hHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999998899999999999999999988899999999987533221 11222222332 24599999
Q ss_pred EEeCCC
Q 035873 254 FLDISG 259 (275)
Q Consensus 254 viD~s~ 259 (275)
|+|+++
T Consensus 79 VvDat~ 84 (591)
T TIGR00437 79 VVDASN 84 (591)
T ss_pred EecCCc
Confidence 999985
No 93
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.25 E-value=7.2e-11 Score=97.18 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=56.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|++.+........+..+.+.....+.+++. .+.+|||||.. .........++..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 73 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE--------RFQSLGVAFYRGA 73 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH--------HHHhHHHHHhcCC
Confidence 6899999999999999999987654333333333444444556554 45789999942 1222334455555
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|++++.
T Consensus 74 -d~~i~v~d~~~~~ 86 (172)
T cd01862 74 -DCCVLVYDVTNPK 86 (172)
T ss_pred -CEEEEEEECCCHH
Confidence 9999999998653
No 94
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.24 E-value=6.5e-11 Score=102.26 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=58.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC---eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
+|+++|.+|||||||+++|.+........|+.+.+.....+.+.+ ..+++|||||... ........++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~--------~~~l~~~~~~~ 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI--------GGKMLDKYIYG 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH--------HHHHHHHHhhc
Confidence 689999999999999999998776544455555566556666643 4789999999421 11122234454
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |+++||+|++++.
T Consensus 74 a-d~iilV~D~t~~~ 87 (215)
T cd04109 74 A-HAVFLVYDVTNSQ 87 (215)
T ss_pred C-CEEEEEEECCCHH
Confidence 4 9999999999653
No 95
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.23 E-value=7e-11 Score=96.43 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=55.1
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|+|++........|..+.+.....+.+++ ..+++|||||... ........++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~- 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER--------FRTLTSSYYRG- 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh--------hhhhhHHHhCC-
Confidence 689999999999999999998776433333333333333344444 4679999999431 12222233444
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
+|++++|+|+++..
T Consensus 73 ~d~~i~v~d~~~~~ 86 (161)
T cd01863 73 AQGVILVYDVTRRD 86 (161)
T ss_pred CCEEEEEEECCCHH
Confidence 49999999998653
No 96
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.23 E-value=6.6e-11 Score=100.27 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=58.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcC-------CcccccCCCcccceEEEEEEec--------------CeeEEEEeCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRA-------DVDVQPYAFTTKSLFVGHTDYK--------------YLRYQVIDTPGILDR 228 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~-------~~~v~~~~~tT~~~~~~~~~~~--------------~~~~~liDTpG~~~~ 228 (275)
+|+++|.+|+|||||+++|++. .......+++|.+.....+.+. +..+.+|||||..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 6899999999999999999863 1123344567777776666665 5688999999962
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
.+.......... +|++++|+|+++..
T Consensus 80 ------~~~~~~~~~~~~-~d~vi~VvD~~~~~ 105 (192)
T cd01889 80 ------SLIRTIIGGAQI-IDLMLLVVDATKGI 105 (192)
T ss_pred ------HHHHHHHHHHhh-CCEEEEEEECCCCc
Confidence 222222333333 49999999998643
No 97
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.23 E-value=8.1e-11 Score=96.93 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=54.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++++.++.....|+.+.......+..++ ..+++|||||..+ ........++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~--------~~~~~~~~~~~ 73 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER--------YRTITTAYYRG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHHccC
Confidence 4799999999999999999998876543333322222222333333 4689999999431 22222334444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|.++.
T Consensus 74 ~-~~~l~v~d~~~~ 86 (165)
T cd01865 74 A-MGFILMYDITNE 86 (165)
T ss_pred C-cEEEEEEECCCH
Confidence 4 999999999864
No 98
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.22 E-value=1.3e-10 Score=92.71 Aligned_cols=89 Identities=25% Similarity=0.205 Sum_probs=66.3
Q ss_pred eeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEec-CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccce
Q 035873 173 ICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSA 250 (275)
Q Consensus 173 ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (275)
++|.+|+|||||+|+|++.... ..+.+++|.........+. +..+.+|||||+.+....... ........+.. +|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-~~~~~~~~~~~-~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-REELARRVLER-ADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-HHHHHHHHHHh-CCE
Confidence 5799999999999999988766 7778888888887777665 678999999998875543321 11223344444 499
Q ss_pred eEEEEeCCCCCCC
Q 035873 251 VLFFLDISGSCGY 263 (275)
Q Consensus 251 il~viD~s~~~g~ 263 (275)
+++|+|++.....
T Consensus 79 il~v~~~~~~~~~ 91 (163)
T cd00880 79 ILFVVDADLRADE 91 (163)
T ss_pred EEEEEeCCCCCCH
Confidence 9999999975433
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.22 E-value=7.7e-11 Score=97.69 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=56.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||++++.+.... . +.+|.+.....+.+.+..+++|||||.... .......++.. |
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~--------~~~~~~~~~~a-d 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKL--------RPLWKHYYLNT-Q 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-C--cCCcCceeEEEEEECCEEEEEEECCCChhc--------chHHHHHhccC-C
Confidence 4789999999999999999976432 2 234555555566677789999999996421 11122344444 9
Q ss_pred eeEEEEeCCCC
Q 035873 250 AVLFFLDISGS 260 (275)
Q Consensus 250 ~il~viD~s~~ 260 (275)
+++||+|++++
T Consensus 69 ~ii~V~D~s~~ 79 (169)
T cd04158 69 AVVFVVDSSHR 79 (169)
T ss_pred EEEEEEeCCcH
Confidence 99999999865
No 100
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.22 E-value=7.6e-11 Score=96.18 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=56.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+.... ..++.|+.+.....+..++. .+++|||||..+. .......++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 72 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF--------TAMRDLYIKN 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc--------chHHHHHhhc
Confidence 47999999999999999999876543 34444555555555555654 5678999996421 1111233444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|+++.
T Consensus 73 ~-~~~ilv~d~~~~ 85 (163)
T cd04136 73 G-QGFVLVYSITSQ 85 (163)
T ss_pred C-CEEEEEEECCCH
Confidence 4 999999999864
No 101
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.22 E-value=1.5e-11 Score=115.82 Aligned_cols=151 Identities=22% Similarity=0.214 Sum_probs=90.9
Q ss_pred chhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccc---cch------------hhHHHHH------hhhH
Q 035873 79 YGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSL---YCC------------KSLEVAA------LGRM 137 (275)
Q Consensus 79 ~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~---~~~------------~~~~~~~------~~r~ 137 (275)
-.+|.+...+.+..|+...-+|+|++........|..++....-. +.+ .+-++.. .+.+
T Consensus 192 ~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~ 271 (562)
T KOG1424|consen 192 SPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAI 271 (562)
T ss_pred ChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhcccc
Confidence 345666666777888899999999999998888887766432110 000 0000000 0000
Q ss_pred -----HHHHHhhCchHHHHHHHHHH-----hccCCCCC--CCCceeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccc
Q 035873 138 -----CTVVKRIGPSLAYLEQIRQH-----MARLPSID--PNTRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKS 204 (275)
Q Consensus 138 -----~~~~~~~~~~l~~l~~~~~~-----l~~~~~~~--~~~~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~ 204 (275)
-..+.+....-..+..+.+. +...+... ....+|++||||||||||+||+|.|.+ +.|+..||-|+.
T Consensus 272 ~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH 351 (562)
T KOG1424|consen 272 FVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH 351 (562)
T ss_pred ccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce
Confidence 00000000000011111111 11111111 124789999999999999999999987 679999999999
Q ss_pred eEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 205 LFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 205 ~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
++.-.++ ..+.++|+||+.-+....
T Consensus 352 FQTi~ls---~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 352 FQTIFLS---PSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eEEEEcC---CCceecCCCCccccCCCc
Confidence 9877664 578999999998665543
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.22 E-value=1.3e-10 Score=96.54 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=57.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+++|...... ...|++ +.....+.+.+..+++|||||... ........++.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~--g~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 76 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTV--GFNVETVTYKNVKFNVWDVGGQDK--------IRPLWRHYYTG 76 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCc--ccceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcc
Confidence 3468999999999999999999865432 223332 233334455677899999999631 22222344555
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |+++||+|++++.
T Consensus 77 a-~~ii~v~D~t~~~ 90 (168)
T cd04149 77 T-QGLIFVVDSADRD 90 (168)
T ss_pred C-CEEEEEEeCCchh
Confidence 4 9999999999764
No 103
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.22 E-value=1.1e-10 Score=94.64 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=57.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|++.+........+.++.......+.+.+. .+.+|||||.. .........+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~- 72 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE--------RYHALGPIYYRD- 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchH--------HHHHhhHHHhcc-
Confidence 6899999999999999999987765444444444444555555443 57899999943 122222233444
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
+|++++|+|+++..
T Consensus 73 ~~~~i~v~d~~~~~ 86 (162)
T cd04123 73 ADGAILVYDITDAD 86 (162)
T ss_pred CCEEEEEEECCCHH
Confidence 49999999998654
No 104
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.22 E-value=8.8e-11 Score=99.34 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=55.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+++|.+.... ..++.|+.+.......+++. .+++|||||..+ ........++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~a 71 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE--------YTALRDQWIREG 71 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchh--------hHHHHHHHHHhC
Confidence 4889999999999999999876653 33444554444444555554 478999999531 122223445555
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++|+|+|.++..
T Consensus 72 -d~~ilv~d~~~~~ 84 (190)
T cd04144 72 -EGFILVYSITSRS 84 (190)
T ss_pred -CEEEEEEECCCHH
Confidence 9999999998643
No 105
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.22 E-value=1.2e-10 Score=94.61 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=56.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||+|++.+.... ..++.|+.+.....+.+++. .+++|||||..+ +.......++.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~l~~~~~~~ 72 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--------YSAMRDQYMRT 72 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEEEEEEEEECCCCcc--------hHHHHHHHHhc
Confidence 37999999999999999999977643 33444554444555556554 467899999532 11122234444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
+|++++|+|.++.
T Consensus 73 -~~~~i~v~~~~~~ 85 (162)
T cd04138 73 -GEGFLCVFAINSR 85 (162)
T ss_pred -CCEEEEEEECCCH
Confidence 4999999999854
No 106
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.22 E-value=1.3e-10 Score=94.86 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=55.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||+|++.+.+......|.+........+.+++ ..+.+|||||.. .........++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 73 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE--------RYRSLAPMYYRG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH--------HHHHHHHHHhcc
Confidence 4799999999999999999998875432333222223333444544 467899999942 222223334454
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|++.+
T Consensus 74 ~-~~~i~v~d~~~~ 86 (163)
T cd01860 74 A-AAAIVVYDITSE 86 (163)
T ss_pred C-CEEEEEEECcCH
Confidence 4 999999999854
No 107
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.21 E-value=9.7e-11 Score=102.19 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=69.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcC--Ccccc-cCCCcccceEEEEEEec---CeeEEEEeCCCCCCCCCCc-hhHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRA--DVDVQ-PYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFED-HNIIEM 238 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~--~~~v~-~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~-~~~~e~ 238 (275)
.....|+++|.+++|||||+|.|.+. ...++ ..+.||++...+...+. +..+.++||||+.+..... +.....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34568999999999999999999998 55544 34678988887776653 5789999999998876544 444444
Q ss_pred HHHHHHHhccceeEEEEeCCC
Q 035873 239 CSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 239 ~~~~~l~~~~d~il~viD~s~ 259 (275)
.++..+ +.|++||.++...
T Consensus 85 ~~l~~l--lss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATL--LSSVLIYNSWETI 103 (224)
T ss_pred HHHHHH--HhCEEEEeccCcc
Confidence 444444 4589999999874
No 108
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.21 E-value=1e-10 Score=95.31 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=56.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||++++++.... .+ ..|.+.....+.+.+..+.+|||||.... .......+... |
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~-~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--TT-IPTIGFNVETVEYKNVSFTVWDVGGQDKI--------RPLWKHYYENT-N 68 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCcCcceEEEEECCEEEEEEECCCChhh--------HHHHHHHhccC-C
Confidence 4899999999999999999988732 11 23445555666777789999999996431 11122344554 9
Q ss_pred eeEEEEeCCCC
Q 035873 250 AVLFFLDISGS 260 (275)
Q Consensus 250 ~il~viD~s~~ 260 (275)
++++|+|++.+
T Consensus 69 ~~i~v~D~~~~ 79 (158)
T cd00878 69 GIIFVVDSSDR 79 (158)
T ss_pred EEEEEEECCCH
Confidence 99999999965
No 109
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.21 E-value=1.3e-10 Score=96.85 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=58.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
..+|+++|.+|||||||+++|++.... ...| |.+.....+.+++..+.+|||||... ........++..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~~ 83 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HTSP--TIGSNVEEIVYKNIRFLMWDIGGQES--------LRSSWNTYYTNT 83 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-CcCC--ccccceEEEEECCeEEEEEECCCCHH--------HHHHHHHHhhcC
Confidence 358999999999999999999876543 2222 44445566677788999999999532 222223345544
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|+++||+|++++
T Consensus 84 -d~vi~V~D~s~~ 95 (174)
T cd04153 84 -DAVILVIDSTDR 95 (174)
T ss_pred -CEEEEEEECCCH
Confidence 999999999865
No 110
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.21 E-value=1.3e-10 Score=97.72 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+++|.+..+. .+ ..|..+..+.+.+++..++++||||... ........++.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~ 86 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA--QH-VPTLHPTSEELTIGNIKFKTFDLGGHEQ--------ARRLWKDYFPE 86 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccCcceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcc
Confidence 4568999999999999999999987653 12 2355566677888888999999999431 12223344555
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|+++.
T Consensus 87 a-d~iilV~D~~~~ 99 (190)
T cd00879 87 V-DGIVFLVDAADP 99 (190)
T ss_pred C-CEEEEEEECCcH
Confidence 4 999999999864
No 111
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.21 E-value=1.2e-10 Score=98.08 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=60.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||++++++..+.. + .+|.++....+.+++.++.++||||... ........++.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 84 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGNIKFTTFDLGGHQQ--------ARRLWKDYFPE 84 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhCC
Confidence 34689999999999999999999876531 1 2355556667777788999999999642 12222344555
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |+++||+|++++
T Consensus 85 a-d~ii~vvD~~~~ 97 (184)
T smart00178 85 V-NGIVYLVDAYDK 97 (184)
T ss_pred C-CEEEEEEECCcH
Confidence 4 999999999865
No 112
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.21 E-value=1.5e-10 Score=95.81 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=55.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+........++.+.+.....+.+++ ..+++|||||..+ ........+.+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 74 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER--------FRKSMVQHYYR 74 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH--------HHHhhHHHhhc
Confidence 5799999999999999999987665433333333334444555555 4689999999431 11111222223
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
.+|++++|+|++++.
T Consensus 75 ~~d~~i~v~d~~~~~ 89 (170)
T cd04115 75 NVHAVVFVYDVTNMA 89 (170)
T ss_pred CCCEEEEEEECCCHH
Confidence 349999999998643
No 113
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.21 E-value=2.4e-11 Score=99.89 Aligned_cols=55 Identities=35% Similarity=0.426 Sum_probs=45.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
..+|+++|.||||||||+|+|.+.+. .+++.|++|+....-. -+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE---cCCCEEEEECcCC
Confidence 45789999999999999999998765 5899999998765332 2346899999996
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.21 E-value=1.4e-10 Score=96.38 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=57.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+++|++..+. .+. .|.+.....+.+++..+++|||||... ........++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~ 81 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEGYKLNIWDVGGQKT--------LRPYWRNYFES 81 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhCC
Confidence 3468999999999999999999987543 111 233344555667778899999999532 11122344555
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |+++||+|++++
T Consensus 82 ~-d~~i~v~d~~~~ 94 (173)
T cd04154 82 T-DALIWVVDSSDR 94 (173)
T ss_pred C-CEEEEEEECCCH
Confidence 4 999999999864
No 115
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.21 E-value=1.6e-10 Score=98.03 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=59.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC-cccc---------------cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD-VDVQ---------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~-~~v~---------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
.+|+++|.+|||||||+++|.+.. .... ...++|.......+.+++..+++|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 479999999999999999998631 1111 1234555555666777788999999999642
Q ss_pred hhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 233 HNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 233 ~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
+.......++.. |++++|+|+++..
T Consensus 78 ---~~~~~~~~~~~~-d~~ilV~d~~~~~ 102 (194)
T cd01891 78 ---FGGEVERVLSMV-DGVLLLVDASEGP 102 (194)
T ss_pred ---HHHHHHHHHHhc-CEEEEEEECCCCc
Confidence 222233455555 9999999998643
No 116
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.20 E-value=1.3e-10 Score=95.54 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=53.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+........+.............++ ..+++|||||... +.......+++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~ 73 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER--------FQTMHASYYHKA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHHHhCCC
Confidence 689999999999999999987664322222212222222233343 3678999999532 222223445555
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|++++.
T Consensus 74 -d~~i~v~d~~~~~ 86 (161)
T cd04124 74 -HACILVFDVTRKI 86 (161)
T ss_pred -CEEEEEEECCCHH
Confidence 9999999998654
No 117
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.20 E-value=1.4e-10 Score=93.24 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=55.9
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccce
Q 035873 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSA 250 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (275)
|+++|.+|||||||+|+|++........|+ .......+..++..+.+|||||... ........+.. +|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~-~d~ 70 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPT--VGFNMRKVTKGNVTLKVWDLGGQPR--------FRSMWERYCRG-VNA 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCC--CCcceEEEEECCEEEEEEECCCCHh--------HHHHHHHHHhc-CCE
Confidence 789999999999999999988765444443 3343445566677899999999531 12222233444 499
Q ss_pred eEEEEeCCCC
Q 035873 251 VLFFLDISGS 260 (275)
Q Consensus 251 il~viD~s~~ 260 (275)
+++|+|+++.
T Consensus 71 ii~v~d~~~~ 80 (159)
T cd04159 71 IVYVVDAADR 80 (159)
T ss_pred EEEEEECCCH
Confidence 9999999864
No 118
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.19 E-value=1.5e-10 Score=94.45 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=55.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec----CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK----YLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
+|+++|.+|+|||||++++++........|+.+.+.....+.+. ...+++|||||.. .........++
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 73 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE--------EFDAITKAYYR 73 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH--------HHHHhHHHHhc
Confidence 68999999999999999999876543333333333333344444 3468999999942 22222234455
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. |++++|+|++++.
T Consensus 74 ~~-~~~v~v~d~~~~~ 88 (162)
T cd04106 74 GA-QACILVFSTTDRE 88 (162)
T ss_pred CC-CEEEEEEECCCHH
Confidence 44 9999999998653
No 119
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.19 E-value=1.5e-10 Score=98.01 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=56.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCccc-ceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTK-SLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
+|+++|.+|||||||++++.+.......++.|+. +.....+.+++ ..++||||||.. .+.......++.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~ 73 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE--------RFRSVTHAYYRD 73 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH--------HHHHhhHHHccC
Confidence 6899999999999999999988776555544433 33333345554 367899999932 222222334444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|++..
T Consensus 74 a-d~~i~v~D~~~~ 86 (191)
T cd04112 74 A-HALLLLYDITNK 86 (191)
T ss_pred C-CEEEEEEECCCH
Confidence 4 999999999864
No 120
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.19 E-value=1.3e-10 Score=104.08 Aligned_cols=92 Identities=20% Similarity=0.114 Sum_probs=66.0
Q ss_pred eeEeeccCCCCHHHHHHHHh---cCCcc---c------------ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKIT---RADVD---V------------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~---~~~~~---v------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
.|+++|.+|+|||||+++|. |..-. + ....++|.+.....+.|++.++.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 48999999999999999996 32100 1 12346788888889999999999999999653
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
+......+++.. |++++|+|++..........++
T Consensus 77 ----f~~~~~~~l~~a-D~ailVVDa~~g~~~~t~~~~~ 110 (270)
T cd01886 77 ----FTIEVERSLRVL-DGAVAVFDAVAGVEPQTETVWR 110 (270)
T ss_pred ----HHHHHHHHHHHc-CEEEEEEECCCCCCHHHHHHHH
Confidence 122345667776 9999999998754433333333
No 121
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.19 E-value=1.7e-10 Score=95.94 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=56.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+........|+...+.....+..++ ..+++|||||..+ ........++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER--------FKCIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH--------HHhhHHHHhcCC
Confidence 689999999999999999998765433334333444444555554 3679999999532 222233445555
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++++|+|+++.
T Consensus 74 -d~~ilv~d~~~~ 85 (170)
T cd04108 74 -QAIIIVFDLTDV 85 (170)
T ss_pred -CEEEEEEECcCH
Confidence 999999999864
No 122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.19 E-value=1.9e-10 Score=94.67 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=55.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCccc-ceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTK-SLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~-~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.+|+++|.+|||||||++++.+.... ..++.|+. ......+..++. .+++|||||.. .........++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~~ 73 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE--------RFRAVTRSYYR 73 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCcccceeEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHhc
Confidence 47999999999999999999977543 33443332 222223444443 57899999942 22222334555
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. |++++|+|++++.
T Consensus 74 ~~-~~~ilv~d~~~~~ 88 (166)
T cd04122 74 GA-AGALMVYDITRRS 88 (166)
T ss_pred CC-CEEEEEEECCCHH
Confidence 55 9999999999653
No 123
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.19 E-value=1.9e-10 Score=95.81 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=56.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec------------CeeEEEEeCCCCCCCCCCchhH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------YLRYQVIDTPGILDRPFEDHNI 235 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~~ 235 (275)
..+|+++|.+|||||||++++.+........|+.+.+.....+.+. ...+.+|||||.. .
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~ 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------R 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------H
Confidence 3579999999999999999999876543333333333333334332 2468899999932 2
Q ss_pred HHHHHHHHHHhccceeEEEEeCCCC
Q 035873 236 IEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 236 ~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
........+++. |++++|+|++++
T Consensus 76 ~~~~~~~~~~~~-~~~i~v~d~~~~ 99 (180)
T cd04127 76 FRSLTTAFFRDA-MGFLLIFDLTNE 99 (180)
T ss_pred HHHHHHHHhCCC-CEEEEEEECCCH
Confidence 222334455555 999999999864
No 124
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.18 E-value=1.8e-10 Score=98.25 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=56.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+........|+.+.+.....+.+++ ..+.+|||||... ........++
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~ 77 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER--------FRTITSTYYR 77 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh--------HHHHHHHHhC
Confidence 46899999999999999999998765433333333333334444444 3678999999431 1112233444
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 78 ~a-~~iilv~D~~~~ 91 (199)
T cd04110 78 GT-HGVIVVYDVTNG 91 (199)
T ss_pred CC-cEEEEEEECCCH
Confidence 44 899999999864
No 125
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.18 E-value=1.9e-10 Score=93.13 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=58.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++++.. ....++.++.+........++ ..+++|||||..+ ........+...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 71 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE--------FSAMRDLYIRQG 71 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHHHhcC
Confidence 48999999999999999999776 455556666666666666664 4678999999543 111222344544
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++++|+|++++
T Consensus 72 -~~~i~v~d~~~~ 83 (160)
T cd00876 72 -DGFILVYSITDR 83 (160)
T ss_pred -CEEEEEEECCCH
Confidence 999999999854
No 126
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.18 E-value=1.9e-10 Score=94.60 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=54.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||++++...... ...| |.+.....+.+....+++|||||... ........++.+ |
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~a-d 69 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT-Q 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECCEEEEEEECCCCHh--------HHHHHHHHhcCC-C
Confidence 6899999999999999999655443 2233 33333344556677899999999631 222223445655 9
Q ss_pred eeEEEEeCCCC
Q 035873 250 AVLFFLDISGS 260 (275)
Q Consensus 250 ~il~viD~s~~ 260 (275)
+++||+|+++.
T Consensus 70 ~~i~v~D~~~~ 80 (159)
T cd04150 70 GLIFVVDSNDR 80 (159)
T ss_pred EEEEEEeCCCH
Confidence 99999999864
No 127
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.18 E-value=2.7e-11 Score=110.91 Aligned_cols=205 Identities=20% Similarity=0.197 Sum_probs=121.9
Q ss_pred CCCChHHHHHHHHhhhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcch
Q 035873 11 VVPNGKDIVDIILSRTQRQTPTVVHKGYSITRLRRFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKD 90 (275)
Q Consensus 11 ~v~~~~eli~~~~~r~~r~~~t~~~~~~~~~rir~~~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d 90 (275)
+|...+.+-+....+++|+-|...-. .+.+ -.+.+. .-.++...-..+- ..++-..+-.+..+.+|.+.
T Consensus 130 hvldtesF~~tFG~KsqRKRp~L~~s-----~le~----L~k~a~-e~~~~yee~~~~~-~~~e~~g~~~~~~~~if~kG 198 (572)
T KOG2423|consen 130 HVLDTESFEDTFGPKSQRKRPKLTAS-----SLEE----LSKAAE-ESDDKYEEKKLGD-LREEEDGVRKAARDAIFSKG 198 (572)
T ss_pred eeecccchhhhhCchhhhcCcccchh-----hHHH----HHHHhh-hhhhhhhhhcccc-chhhcccchHHHHHHHHhcc
Confidence 56777888888889999988865322 1111 112221 1111111111111 12333467778888888988
Q ss_pred hhHHhhcccchhhhhhhhHH-------------HHHhhhcccC---cc----ccchhhHHHHHhhhHHHHHHhhCc----
Q 035873 91 HYKLALGQINTARNLISKIA-------------KDYVKLLKYG---DS----LYCCKSLEVAALGRMCTVVKRIGP---- 146 (275)
Q Consensus 91 ~~k~~l~~v~~a~~~~~~i~-------------~~~~~~ik~~---~~----~~~~~~~~~~~~~r~~~~~~~~~~---- 146 (275)
..+..++.+-+.....+-+. +.....+|.. .. +..|+-+-.|+..++..++.+.-.
T Consensus 199 QSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAf 278 (572)
T KOG2423|consen 199 QSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAF 278 (572)
T ss_pred chhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceee
Confidence 88888888777766554221 1122222221 11 123555666666666665544311
Q ss_pred ------hHHH--HHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeE
Q 035873 147 ------SLAY--LEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRY 217 (275)
Q Consensus 147 ------~l~~--l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~ 217 (275)
+... |-.+..++.++.. +.....|++|||||+||||+||.|..++++ ++|.|+-|+-.+...+. .++
T Consensus 279 HAsi~nsfGKgalI~llRQf~kLh~-dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krI 354 (572)
T KOG2423|consen 279 HASINNSFGKGALIQLLRQFAKLHS-DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRI 354 (572)
T ss_pred ehhhcCccchhHHHHHHHHHHhhcc-CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hce
Confidence 1111 2222333334322 234457999999999999999999999987 99999999876544433 689
Q ss_pred EEEeCCCCCCCCC
Q 035873 218 QVIDTPGILDRPF 230 (275)
Q Consensus 218 ~liDTpG~~~~~~ 230 (275)
.+||+||+.-...
T Consensus 355 fLIDcPGvVyps~ 367 (572)
T KOG2423|consen 355 FLIDCPGVVYPSS 367 (572)
T ss_pred eEecCCCccCCCC
Confidence 9999999986553
No 128
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.18 E-value=1.8e-10 Score=97.01 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=55.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+........|+.+.+.....+..++. .+++|||||.. .........++..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~--------~~~~~~~~~~~~~ 73 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE--------RFRSLNNSYYRGA 73 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH--------HHHhhHHHHccCC
Confidence 6899999999999999999987764333333333343444555443 56899999943 1222223444544
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|++++.
T Consensus 74 -d~iilv~d~~~~~ 86 (188)
T cd04125 74 -HGYLLVYDVTDQE 86 (188)
T ss_pred -CEEEEEEECcCHH
Confidence 9999999998653
No 129
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.18 E-value=2.1e-10 Score=94.08 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=57.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++..... +..++.|+.+.....+..++. .+++|||||... ........++.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~ 72 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--------FTAMRDLYMKN 72 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCccc--------chhHHHHHHhh
Confidence 4799999999999999999985543 344555665555555556554 467999999642 11112234555
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|.++..
T Consensus 73 ~-d~~ilv~d~~~~~ 86 (164)
T cd04175 73 G-QGFVLVYSITAQS 86 (164)
T ss_pred C-CEEEEEEECCCHH
Confidence 5 9999999998543
No 130
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=2.7e-10 Score=111.31 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=61.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccC-CCcccceEEEEEEecCeeEEEEeCCCCCCCCCCch--hHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPY-AFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDH--NIIEMCSITA 243 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~-~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~~e~~~~~~ 243 (275)
..+|+++|.+||||||++|+|+|.+. .+... +.||. .......+++..+.||||||+.+...+.. ..+.+.....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 45899999999999999999999875 45554 44554 44444456788999999999998643321 1222222234
Q ss_pred HHh-ccceeEEEEeCC
Q 035873 244 LAH-LRSAVLFFLDIS 258 (275)
Q Consensus 244 l~~-~~d~il~viD~s 258 (275)
+.. .+|+||||+..+
T Consensus 197 Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLD 212 (763)
T ss_pred HhcCCCCEEEEEEeCC
Confidence 443 258999998775
No 131
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.17 E-value=1.7e-10 Score=95.40 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=55.4
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccce
Q 035873 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSA 250 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (275)
|+++|.+|||||||++++.+........| |.+.....+.+.+..+.+|||||..+ ........++.. |+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p--t~g~~~~~i~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~a-d~ 70 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP--TTGFNSVAIPTQDAIMELLEIGGSQN--------LRKYWKRYLSGS-QG 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc--cCCcceEEEeeCCeEEEEEECCCCcc--------hhHHHHHHHhhC-CE
Confidence 78999999999999999997754322223 22233344556677899999999542 112223455665 99
Q ss_pred eEEEEeCCCCC
Q 035873 251 VLFFLDISGSC 261 (275)
Q Consensus 251 il~viD~s~~~ 261 (275)
++||+|++++.
T Consensus 71 ii~V~D~t~~~ 81 (164)
T cd04162 71 LIFVVDSADSE 81 (164)
T ss_pred EEEEEECCCHH
Confidence 99999998654
No 132
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.17 E-value=2.5e-10 Score=94.18 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||++++.+.+......+..+.......+.+++. .+++|||||.. .........+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE--------RFRSLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH--------HHHHhHHHHh
Confidence 3468999999999999999999987765444443333333444555554 56889999942 2222223445
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
+.. |++++|+|.++..
T Consensus 76 ~~~-d~~i~v~d~~~~~ 91 (170)
T cd04116 76 RGS-DCCLLTFAVDDSQ 91 (170)
T ss_pred cCC-CEEEEEEECCCHH
Confidence 544 9999999998653
No 133
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.17 E-value=1.7e-10 Score=98.41 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=56.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-C--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
+|+++|.+|||||||++++.+........|+...+.....+.++ + ..+++|||||... +.......++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ 73 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER--------FGGMTRVYYRG 73 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh--------hhhhHHHHhCC
Confidence 68999999999999999999876543333433334444455555 3 3578999999631 11122344555
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|++++.
T Consensus 74 a-~~~ilv~D~t~~~ 87 (201)
T cd04107 74 A-VGAIIVFDVTRPS 87 (201)
T ss_pred C-CEEEEEEECCCHH
Confidence 4 9999999998653
No 134
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.17 E-value=1.8e-10 Score=94.15 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=55.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||+++|+..... ...| |.+.....+.+.+..+++|||||..+ ........+.. +|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~-~~ 68 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIP--TIGFNVETVTYKNLKFQVWDLGGQTS--------IRPYWRCYYSN-TD 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCC--ccCcCeEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcC-CC
Confidence 4789999999999999999765543 2222 33344445566678899999999642 11222344454 49
Q ss_pred eeEEEEeCCCC
Q 035873 250 AVLFFLDISGS 260 (275)
Q Consensus 250 ~il~viD~s~~ 260 (275)
++++|+|++++
T Consensus 69 ~ii~v~d~~~~ 79 (158)
T cd04151 69 AIIYVVDSTDR 79 (158)
T ss_pred EEEEEEECCCH
Confidence 99999999865
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.17 E-value=2.5e-10 Score=94.87 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=53.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCccc------cc---------CCCcccceEEEEEEe-----cCeeEEEEeCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDV------QP---------YAFTTKSLFVGHTDY-----KYLRYQVIDTPGILDRP 229 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v------~~---------~~~tT~~~~~~~~~~-----~~~~~~liDTpG~~~~~ 229 (275)
.|+++|.+|||||||+++|.+....+ .. ..++|.......+.+ .+..+++|||||..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 68999999999999999998643211 11 112333333333333 2446789999997531
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
.......++.. |++++|+|+++...
T Consensus 81 -------~~~~~~~~~~a-d~~i~v~D~~~~~~ 105 (179)
T cd01890 81 -------SYEVSRSLAAC-EGALLLVDATQGVE 105 (179)
T ss_pred -------HHHHHHHHHhc-CeEEEEEECCCCcc
Confidence 11223455555 99999999986543
No 136
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.16 E-value=3e-10 Score=93.42 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=56.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+........|+...+.....+..++ ..+++|||||... ........+++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~~~~ 73 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER--------YQTITKQYYRRA 73 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh--------HHhhHHHHhcCC
Confidence 689999999999999999997776544444333334444555555 3578999999432 111122344444
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|.++..
T Consensus 74 -~~~i~v~d~~~~~ 86 (161)
T cd04117 74 -QGIFLVYDISSER 86 (161)
T ss_pred -cEEEEEEECCCHH
Confidence 9999999999653
No 137
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.16 E-value=2.5e-10 Score=93.38 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=55.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|++.+..... .++.|+.+........++ ..+++|||||..+.. ......++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~~~ 72 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS--------AMRDQYMRTG 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch--------HHHHHHHhhC
Confidence 68999999999999999999766432 333344444444455554 367899999964311 1112334444
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++++|+|+++.
T Consensus 73 -~~~i~v~d~~~~ 84 (164)
T smart00173 73 -EGFLLVYSITDR 84 (164)
T ss_pred -CEEEEEEECCCH
Confidence 999999999864
No 138
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.16 E-value=6.5e-11 Score=108.61 Aligned_cols=171 Identities=14% Similarity=0.209 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHhhhCCCC----CCCCCC---chhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccC-ccc-
Q 035873 53 YTQQNFFEKLSTIIDEFPRL----DDIHPF---YGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYG-DSL- 123 (275)
Q Consensus 53 ~~~~~~~~~l~~i~~~fp~i----~~l~pF---~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~-~~~- 123 (275)
.+...+.+.|++++...-.+ |.-+|. -.+..+++.....-|.....+|+.+.......++|..+++.. ..+
T Consensus 131 ~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~ 210 (435)
T KOG2484|consen 131 ESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVA 210 (435)
T ss_pred hhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcce
Confidence 45667777788888776644 666666 667788876544447888899999999999999999998752 221
Q ss_pred cchhhHHHHHhhhHH-HHHHhhCchHHHHHHHHHHhccCCCC--CCCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCC
Q 035873 124 YCCKSLEVAALGRMC-TVVKRIGPSLAYLEQIRQHMARLPSI--DPNTRTILICWYPNVGKSSFMNKITRADVD-VQPYA 199 (275)
Q Consensus 124 ~~~~~~~~~~~~r~~-~~~~~~~~~l~~l~~~~~~l~~~~~~--~~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~ 199 (275)
+.+. -.++-. +...+.+.++. .+.+...++..... -....+++|||+|||||||+||+|...+++ +++.|
T Consensus 211 fkas-----t~~~~~~~~~~~~s~c~g-ae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p 284 (435)
T KOG2484|consen 211 FKAS-----TQMQNSNSKNLQSSVCFG-AETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP 284 (435)
T ss_pred eecc-----cccccccccccccchhhh-HHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCc
Confidence 1111 001100 01111111111 11122333332211 245679999999999999999999998886 99999
Q ss_pred CcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 200 FTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 200 ~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
+.|+..+..++ +..+-++|.||++-.+.+.
T Consensus 285 GvT~smqeV~L---dk~i~llDsPgiv~~~~~~ 314 (435)
T KOG2484|consen 285 GVTRSMQEVKL---DKKIRLLDSPGIVPPSIDE 314 (435)
T ss_pred cchhhhhheec---cCCceeccCCceeecCCCc
Confidence 99999887765 4789999999998766554
No 139
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.16 E-value=2.1e-10 Score=96.88 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=55.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccce-EEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSL-FVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~-~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
+|+++|.+|||||||++++.+......++..|.... ....+..++. .+.+|||||..+. +......+..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~~~ 73 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY--------EAMSRIYYRG 73 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh--------hhhhHhhcCC
Confidence 689999999999999999998776655555444332 2334556654 4569999995321 1111223333
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
+|++++|+|+++.
T Consensus 74 -~d~iilv~d~~~~ 86 (193)
T cd04118 74 -AKAAIVCYDLTDS 86 (193)
T ss_pred -CCEEEEEEECCCH
Confidence 4999999999864
No 140
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.15 E-value=2.7e-10 Score=90.93 Aligned_cols=82 Identities=23% Similarity=0.246 Sum_probs=59.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|+|||||+|+|.+........+++|.+.....+.+++ ..+.+|||||..+. ... .....++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~---~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY-----RAI---RRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc-----hHH---HHHHHhh
Confidence 4799999999999999999998886677778888888887777877 67889999994321 111 1122333
Q ss_pred ccceeEEEEeCCC
Q 035873 247 LRSAVLFFLDISG 259 (275)
Q Consensus 247 ~~d~il~viD~s~ 259 (275)
. +.+++++|.+.
T Consensus 74 ~-~~~i~~~d~~~ 85 (161)
T TIGR00231 74 V-ESSLRVFDIVI 85 (161)
T ss_pred h-hEEEEEEEEee
Confidence 3 66666777653
No 141
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.15 E-value=4.5e-10 Score=106.12 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHh------cCCcccccC-CCc-----------cc-c-eEEEEEE-e-------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT------RADVDVQPY-AFT-----------TK-S-LFVGHTD-Y------------- 212 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~~-~~t-----------T~-~-~~~~~~~-~------------- 212 (275)
.+..|+++|.+||||||++.+|+ |.++.+.+. ++. .. + +...... .
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35689999999999999999997 555442221 110 00 0 0111000 0
Q ss_pred --cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 213 --KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 213 --~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.+.++.+|||||..+...+.+.++.+. ... ..+|.++||+|++ .|+++.+|++.|++
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i--~~~-~~p~e~lLVlda~--~Gq~a~~~a~~F~~ 237 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQV--AEA-IQPDNIIFVMDGS--IGQAAEAQAKAFKD 237 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHH--hhh-cCCcEEEEEeccc--cChhHHHHHHHHHh
Confidence 145889999999876443333333221 111 1258899999998 88999999999875
No 142
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=2.6e-10 Score=98.44 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=58.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-C--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.+|+++|.+|||||||++++++.+......|+.+.+.....+.+. + ..+++|||||.. .........++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~~ 74 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE--------RFRSITRSYYR 74 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch--------hHHHHHHHHhc
Confidence 479999999999999999999877544334444445544455543 3 367899999943 22223334555
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 75 ~~-d~iilv~D~~~~ 88 (211)
T cd04111 75 NS-VGVLLVFDITNR 88 (211)
T ss_pred CC-cEEEEEEECCCH
Confidence 54 999999999865
No 143
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=99.14 E-value=4.7e-11 Score=80.80 Aligned_cols=41 Identities=59% Similarity=0.888 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhcC
Q 035873 235 IIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSI 275 (275)
Q Consensus 235 ~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ei 275 (275)
++|++++.+|+|++++|+|++|+|+.||+++++|++||++|
T Consensus 1 ~IE~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~i 41 (58)
T PF06858_consen 1 EIEMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEI 41 (58)
T ss_dssp HHHHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHH
T ss_pred ChhHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999975
No 144
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.14 E-value=3.3e-10 Score=96.82 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=66.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-------c---------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-------D---------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-------~---------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
..|+++|.+++|||||+++|++... . .....++|.+.....+++++.++.++||||..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 4799999999999999999975310 0 11145677777777777788899999999963
Q ss_pred hhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 233 HNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 233 ~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.+......++... |++++|+|++.+......+-+.++
T Consensus 77 --~~~~~~~~~~~~~-D~~ilVvda~~g~~~~~~~~~~~~ 113 (195)
T cd01884 77 --DYIKNMITGAAQM-DGAILVVSATDGPMPQTREHLLLA 113 (195)
T ss_pred --HHHHHHHHHhhhC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 2223345566655 999999999865444444444443
No 145
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.13 E-value=5.3e-10 Score=93.38 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=56.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
..+|+++|.+|||||||++++...... ...| |.+.....+.+++..+++|||||... ........++.+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~a 81 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIP--TIGFNVETVTYKNISFTVWDVGGQDK--------IRPLWRHYYTNT 81 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCC--ccccceEEEEECCEEEEEEECCCChh--------hHHHHHHHhCCC
Confidence 468999999999999999999644432 2223 33333344556777899999999532 122223345555
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|+++||+|++++.
T Consensus 82 -d~ii~v~D~t~~~ 94 (175)
T smart00177 82 -QGLIFVVDSNDRD 94 (175)
T ss_pred -CEEEEEEECCCHH
Confidence 9999999999653
No 146
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.13 E-value=6.4e-11 Score=100.32 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=45.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC---------cccccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD---------VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~---------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
...++++|.||||||||+|+|.+.. +.+++.|+||+++....+. ..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 3579999999999999999999743 4578889999998766653 26899999996
No 147
>PLN03110 Rab GTPase; Provisional
Probab=99.13 E-value=3.6e-10 Score=97.82 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=61.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+++|.+........|+...+.....+.+++ ..+++|||||.. .+.......+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE--------RYRAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHh
Confidence 346899999999999999999998776544445444455555666655 367899999943 2222233445
Q ss_pred HhccceeEEEEeCCCCCC
Q 035873 245 AHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g 262 (275)
+. ++++++|+|+++...
T Consensus 83 ~~-~~~~ilv~d~~~~~s 99 (216)
T PLN03110 83 RG-AVGALLVYDITKRQT 99 (216)
T ss_pred CC-CCEEEEEEECCChHH
Confidence 54 499999999987544
No 148
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.13 E-value=4.7e-10 Score=92.70 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=57.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
+..+|+++|.+|||||||+++|.+..... ...|.+.....+.+.+..+.+|||||... ........++.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 81 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRA--------IRPYWRNYFEN 81 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcC
Confidence 35689999999999999999999875431 12244444556677788999999999531 11111233444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
+|++++|+|+++.
T Consensus 82 -~~~ii~v~D~~~~ 94 (173)
T cd04155 82 -TDCLIYVIDSADK 94 (173)
T ss_pred -CCEEEEEEeCCCH
Confidence 4899999999864
No 149
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=102.97 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=59.3
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcC------CcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRA------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMC 239 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~------~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~ 239 (275)
.....+.++|.||||||||||++... ...+++.|+.|+......-..+...++++||||++.+...+.+...+.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKL 220 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKL 220 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhh
Confidence 45678999999999999999998632 245899999999887654444566799999999998876666666555
Q ss_pred HH
Q 035873 240 SI 241 (275)
Q Consensus 240 ~~ 241 (275)
++
T Consensus 221 AL 222 (335)
T KOG2485|consen 221 AL 222 (335)
T ss_pred hh
Confidence 44
No 150
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.13 E-value=5.8e-10 Score=99.63 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=62.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc------cc------c------CCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD------VQ------P------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~------v~------~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
+|+++|.+|+|||||+|+|.+.... +. + ..+.|.......+.|++.++++|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 4799999999999999999642211 11 1 113455566677888889999999999642
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
+......++..+ |++++|+|++..........++
T Consensus 77 ----f~~~~~~~l~~a-D~~i~Vvd~~~g~~~~~~~~~~ 110 (268)
T cd04170 77 ----FVGETRAALRAA-DAALVVVSAQSGVEVGTEKLWE 110 (268)
T ss_pred ----HHHHHHHHHHHC-CEEEEEEeCCCCCCHHHHHHHH
Confidence 222345566665 9999999999755444344343
No 151
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.12 E-value=4.8e-10 Score=94.31 Aligned_cols=83 Identities=10% Similarity=0.072 Sum_probs=54.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe---cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY---KYLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..+|+++|.+|||||||++++.+.... ...|+.+.......+.. .+..+.+|||||.. .+.......+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~ 73 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE--------KLRPLWKSYT 73 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcH--------hHHHHHHHHh
Confidence 357999999999999999999876543 33444333333333332 34578999999952 1111222334
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+. +|+++||+|++++
T Consensus 74 ~~-~d~ii~v~D~~~~ 88 (183)
T cd04152 74 RC-TDGIVFVVDSVDV 88 (183)
T ss_pred cc-CCEEEEEEECCCH
Confidence 43 4999999999864
No 152
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.12 E-value=3.6e-10 Score=92.86 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=56.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+... ...++.++.......+.+++. .+++|||||...... .. ....++..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~----~~~~~~~~ 72 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---EQ----LERSIRWA 72 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc---ch----HHHHHHhC
Confidence 489999999999999999986544 345555554444455555554 578999999764111 11 12334444
Q ss_pred cceeEEEEeCCCCCC
Q 035873 248 RSAVLFFLDISGSCG 262 (275)
Q Consensus 248 ~d~il~viD~s~~~g 262 (275)
|++++|+|++++..
T Consensus 73 -d~~i~v~d~~~~~s 86 (165)
T cd04146 73 -DGFVLVYSITDRSS 86 (165)
T ss_pred -CEEEEEEECCCHHH
Confidence 99999999996543
No 153
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.12 E-value=1.2e-10 Score=95.63 Aligned_cols=56 Identities=34% Similarity=0.350 Sum_probs=47.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
...+++++|.|||||||++|+|++... .+++.|+||.......+ +..++++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 457899999999999999999998774 58899999999876543 357999999996
No 154
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.12 E-value=3.8e-10 Score=96.11 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=57.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+.... ..+..|+.......+.+++ ..+++|||||..... ......+...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~~~~~~~a 71 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP--------AMRKLSIQNS 71 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh--------HHHHHHhhcC
Confidence 4899999999999999999987654 3344555555556666666 467899999964311 1112234444
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|+++||+|++++.
T Consensus 72 -d~vilv~d~~~~~ 84 (198)
T cd04147 72 -DAFALVYAVDDPE 84 (198)
T ss_pred -CEEEEEEECCCHH
Confidence 9999999998653
No 155
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.12 E-value=4.4e-10 Score=91.97 Aligned_cols=82 Identities=11% Similarity=0.140 Sum_probs=55.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+...... ++.|+.+.....+..++. .+++|||||...-. . .....+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~----~~~~~~~~ 72 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----S----MRDLYIKN 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEECCEEEEEEEEECCCccccc----c----hHHHHHhh
Confidence 4799999999999999999987665432 333444444445555554 46789999953211 1 11223444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|.++.
T Consensus 73 a-d~~i~v~d~~~~ 85 (163)
T cd04176 73 G-QGFIVVYSLVNQ 85 (163)
T ss_pred C-CEEEEEEECCCH
Confidence 4 999999999864
No 156
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.12 E-value=4.5e-10 Score=110.54 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=69.7
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
..++++|+++|.+|+|||||+++|.+..+.....+++|.+.....+.+++. .+.+|||||..+.. ......
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------~~r~rg 155 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------SMRARG 155 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchh--------hHHHhh
Confidence 346789999999999999999999988877666778888877767777555 89999999964211 111122
Q ss_pred HHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 244 LAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 244 l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
. ...|++++|+|+++.......+.+.
T Consensus 156 a-~~aDiaILVVda~dgv~~qT~e~i~ 181 (587)
T TIGR00487 156 A-KVTDIVVLVVAADDGVMPQTIEAIS 181 (587)
T ss_pred h-ccCCEEEEEEECCCCCCHhHHHHHH
Confidence 3 3349999999998654333333333
No 157
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.12 E-value=6e-10 Score=93.84 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=56.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
..+|+++|.+|||||||++++...... ...| |.+.....+...+..+++|||||.. .........++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~--T~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~a 85 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEYKNLKFTMWDVGGQD--------KLRPLWRHYYQNT 85 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--ccccceEEEEECCEEEEEEECCCCH--------hHHHHHHHHhcCC
Confidence 458999999999999999999754432 2223 3334444556677889999999953 1222233445554
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++|||+|+++.
T Consensus 86 -d~iI~v~D~t~~ 97 (182)
T PTZ00133 86 -NGLIFVVDSNDR 97 (182)
T ss_pred -CEEEEEEeCCCH
Confidence 999999999864
No 158
>PTZ00369 Ras-like protein; Provisional
Probab=99.11 E-value=5.7e-10 Score=94.27 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=55.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+.... ..+..|+.......+.+++. .+++|||||..+. .......++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~l~~~~~~ 75 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY--------SAMRDQYMR 75 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc--------hhhHHHHhh
Confidence 468999999999999999999976543 23333333333444445544 5678999996431 111123344
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
. +|++++|+|++++.
T Consensus 76 ~-~d~iilv~D~s~~~ 90 (189)
T PTZ00369 76 T-GQGFLCVYSITSRS 90 (189)
T ss_pred c-CCEEEEEEECCCHH
Confidence 4 49999999999654
No 159
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.11 E-value=4.9e-10 Score=92.50 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=58.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.||||||||++++.+.... ..++.|+.......+.+++ ..+++|||||..+-. . .....++.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~----~~~~~~~~ 72 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT----A----MRELYIKS 72 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEEEEEEEEeCCCcccch----h----hhHHHHhh
Confidence 36999999999999999999866543 3344444444445555554 467899999965321 1 11223344
Q ss_pred ccceeEEEEeCCCCCCCCHHHHHH
Q 035873 247 LRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
++++++|+|.+++ .+++.+..
T Consensus 73 -~~~~vlv~~~~~~--~s~~~~~~ 93 (168)
T cd04177 73 -GQGFLLVYSVTSE--ASLNELGE 93 (168)
T ss_pred -CCEEEEEEECCCH--HHHHHHHH
Confidence 4899999999854 34444433
No 160
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.11 E-value=5.5e-10 Score=95.91 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=59.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
.|+++|..|||||||++++..........++.+.+.....+.+++ ..+++|||||... ........++.+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~--------~~~l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER--------FNSITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh--------hHHHHHHHhcCC
Confidence 488999999999999999987665433334444455556667766 4678999999531 222223445555
Q ss_pred cceeEEEEeCCCCCCC
Q 035873 248 RSAVLFFLDISGSCGY 263 (275)
Q Consensus 248 ~d~il~viD~s~~~g~ 263 (275)
|++++|+|+++....
T Consensus 74 -d~iIlVfDvtd~~Sf 88 (202)
T cd04120 74 -KGIILVYDITKKETF 88 (202)
T ss_pred -CEEEEEEECcCHHHH
Confidence 999999999976443
No 161
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=8.9e-10 Score=92.73 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
..+|+++|.+|||||||++++...... ...| |.+.....+.+++..+++|||||.. .........++..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~i~D~~Gq~--------~~~~~~~~~~~~a 85 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNT 85 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccC--CcceeEEEEEECCEEEEEEECCCCH--------HHHHHHHHHhccC
Confidence 458999999999999999999855432 2223 3334444556677889999999942 2222333445555
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|+++||+|+++..
T Consensus 86 -~~iI~V~D~s~~~ 98 (181)
T PLN00223 86 -QGLIFVVDSNDRD 98 (181)
T ss_pred -CEEEEEEeCCcHH
Confidence 9999999999653
No 162
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.11 E-value=6.6e-10 Score=91.46 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=54.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+........| |+.......+... ...+++|||||....+ ......+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQRLSISK 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcch--------HHHHHHhhc
Confidence 4799999999999999999998775433222 2222222233333 3467899999975321 112234454
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|.++..
T Consensus 73 ~-~~~ilv~d~~~~~ 86 (165)
T cd04140 73 G-HAFILVYSVTSKQ 86 (165)
T ss_pred C-CEEEEEEECCCHH
Confidence 4 9999999998654
No 163
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.10 E-value=3.6e-10 Score=93.25 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=57.3
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC------------------------------------
Q 035873 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY------------------------------------ 214 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~------------------------------------ 214 (275)
|+++|..++|||||||+|.|..+.......+|..+..-+..-+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 68999999999999999999875422222344444332221100
Q ss_pred --------------------eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCC
Q 035873 215 --------------------LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYS 264 (275)
Q Consensus 215 --------------------~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~ 264 (275)
..+.++||||+.+...... ..+...+.+ +|++|||+|++......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~----~~~~~~~~~-~d~vi~V~~~~~~~~~~ 145 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT----EITEEYLPK-ADVVIFVVDANQDLTES 145 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS----HHHHHHHST-TEEEEEEEETTSTGGGH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH----HHHHHhhcc-CCEEEEEeccCcccchH
Confidence 3578999999976332221 234455644 49999999999754443
No 164
>PLN03118 Rab family protein; Provisional
Probab=99.10 E-value=6.4e-10 Score=95.66 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=56.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+++|++..... ..|+++.+.....+.+++ ..+++|||||..+ +.......+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER--------FRTLTSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchh--------hHHHHHHHH
Confidence 34689999999999999999999876531 123333333334455554 4678999999542 122223445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 84 ~~~-d~~vlv~D~~~~ 98 (211)
T PLN03118 84 RNA-QGIILVYDVTRR 98 (211)
T ss_pred hcC-CEEEEEEECCCH
Confidence 555 999999999864
No 165
>PLN03108 Rab family protein; Provisional
Probab=99.09 E-value=6.3e-10 Score=95.87 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=59.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+++|++........|+.+.+.....+.+++. .+++|||||.. .+..+....++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~--------~~~~~~~~~~~ 77 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE--------SFRSITRSYYR 77 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH--------HHHHHHHHHhc
Confidence 458999999999999999999987665444444444444455556553 57899999943 22222334455
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. |++++|+|+++..
T Consensus 78 ~a-d~~vlv~D~~~~~ 92 (210)
T PLN03108 78 GA-AGALLVYDITRRE 92 (210)
T ss_pred cC-CEEEEEEECCcHH
Confidence 44 9999999998654
No 166
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.09 E-value=5.7e-10 Score=92.68 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=58.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccc-eEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKS-LFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~-~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
+..+|+++|.+|||||||++++.+....+..+..|+.. .....+.+++ ..+++|||+|..... ......
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~~~ 74 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI--------LLNDAE 74 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc--------ccchhh
Confidence 35689999999999999999999877653455444433 3334455555 357889999964321 111233
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++|+|+|++++
T Consensus 75 ~~~~-d~~llv~d~~~~ 90 (169)
T cd01892 75 LAAC-DVACLVYDSSDP 90 (169)
T ss_pred hhcC-CEEEEEEeCCCH
Confidence 4554 999999999865
No 167
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.09 E-value=9.4e-10 Score=91.66 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=54.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++++........ .|+.........+++ ..+++|||||..+ +.......+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~ 72 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY-PTIENTFSKIIRYKGQDYHLEIVDTAGQDE--------YSILPQKYSIG 72 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccC-cchhhhEEEEEEECCEEEEEEEEECCChHh--------hHHHHHHHHhh
Confidence 379999999999999999999776543333 344443344455554 3568999999532 22222233343
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
.+++++|+|.++.
T Consensus 73 -~~~~i~v~d~~~~ 85 (180)
T cd04137 73 -IHGYILVYSVTSR 85 (180)
T ss_pred -CCEEEEEEECCCH
Confidence 4899999999964
No 168
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.08 E-value=1.3e-09 Score=97.49 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=58.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc---c---c----------ccC------CCcccceEEEEEEecCeeEEEEeCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV---D---V----------QPY------AFTTKSLFVGHTDYKYLRYQVIDTPGIL 226 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~---~---v----------~~~------~~tT~~~~~~~~~~~~~~~~liDTpG~~ 226 (275)
..|+++|.+|+|||||+++|+.... . + .++ -+.|.......+.|++.++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999974211 1 1 111 1223334555778889999999999965
Q ss_pred CCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 227 DRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
+ +......+++.. |++++|+|++...
T Consensus 83 d--------f~~~~~~~l~~a-D~~IlVvda~~g~ 108 (267)
T cd04169 83 D--------FSEDTYRTLTAV-DSAVMVIDAAKGV 108 (267)
T ss_pred H--------HHHHHHHHHHHC-CEEEEEEECCCCc
Confidence 3 112234566665 9999999998654
No 169
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.08 E-value=7.1e-10 Score=111.94 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=71.6
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..+++.|+++|..|+|||||+++|.+.++.....++.|.+.....+.|++..+.+|||||..+.. . ......
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~----~----m~~rga 358 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT----A----MRARGA 358 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccch----h----HHHhhh
Confidence 35788999999999999999999998777666667778777777788888899999999965321 1 112233
Q ss_pred HhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 245 AHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
.. .|++|+|+|+++.......+.+.
T Consensus 359 ~~-aDiaILVVdAddGv~~qT~e~i~ 383 (787)
T PRK05306 359 QV-TDIVVLVVAADDGVMPQTIEAIN 383 (787)
T ss_pred hh-CCEEEEEEECCCCCCHhHHHHHH
Confidence 33 49999999998755433333343
No 170
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.08 E-value=5.8e-10 Score=90.51 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=55.6
Q ss_pred eEeeccCCCCHHHHHHHHhcCC--cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC--chhHHHHHHHHHHHh
Q 035873 171 ILICWYPNVGKSSFMNKITRAD--VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DHNIIEMCSITALAH 246 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~e~~~~~~l~~ 246 (275)
|+++|.+|+|||||+|.|++.. ...++.+++|..... ..++ ..++++||||+...... ....+.......+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999433 346666666655433 2222 38899999998764321 112222221222322
Q ss_pred c--cceeEEEEeCCCCC
Q 035873 247 L--RSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~--~d~il~viD~s~~~ 261 (275)
. .+++++|+|.+...
T Consensus 79 ~~~~~~~~~v~d~~~~~ 95 (170)
T cd01876 79 RENLKGVVLLIDSRHGP 95 (170)
T ss_pred ChhhhEEEEEEEcCcCC
Confidence 2 26799999998543
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.08 E-value=5.2e-10 Score=92.23 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=49.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||+|+|.|..... ..| +.+.+.+. .+|||||..... ..+.+....++... |
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~-----~~v~~~~~--~~iDtpG~~~~~----~~~~~~~~~~~~~a-d 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKT-----QAVEFNDK--GDIDTPGEYFSH----PRWYHALITTLQDV-D 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccc-----eEEEECCC--CcccCCccccCC----HHHHHHHHHHHhcC-C
Confidence 69999999999999999999765311 112 22333333 269999975322 12222223445554 9
Q ss_pred eeEEEEeCCCCC
Q 035873 250 AVLFFLDISGSC 261 (275)
Q Consensus 250 ~il~viD~s~~~ 261 (275)
++++|+|+++..
T Consensus 67 ~il~v~d~~~~~ 78 (158)
T PRK15467 67 MLIYVHGANDPE 78 (158)
T ss_pred EEEEEEeCCCcc
Confidence 999999999653
No 172
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.08 E-value=7.7e-10 Score=97.90 Aligned_cols=90 Identities=12% Similarity=0.217 Sum_probs=59.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+..... .+..|+.+.....+.+++. .+++|||||..+.. .+ ....+..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~-----~~---~~~~~~~- 71 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP-----AM---RRLSILT- 71 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh-----HH---HHHHhcc-
Confidence 68999999999999999998766543 4444555555556666664 56799999954211 11 1122334
Q ss_pred cceeEEEEeCCCCCCCCHHHHHHH
Q 035873 248 RSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 248 ~d~il~viD~s~~~g~~~~~q~~l 271 (275)
+|++|+|+|+++. .++++...+
T Consensus 72 ad~iIlVfdv~~~--~Sf~~i~~~ 93 (247)
T cd04143 72 GDVFILVFSLDNR--ESFEEVCRL 93 (247)
T ss_pred CCEEEEEEeCCCH--HHHHHHHHH
Confidence 4999999999964 344444333
No 173
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.08 E-value=1.1e-09 Score=89.03 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=56.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++++.... ..+.+++.+.......+++ ..+.+|||||..+. .......+++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~ 72 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY--------AAIRDNYHRSG 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhh--------hHHHHHHhhcC
Confidence 6899999999999999999966543 3444555555444445554 46899999995432 22233455655
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++++|+|.+.+
T Consensus 73 -~~~i~v~d~~~~ 84 (164)
T cd04139 73 -EGFLLVFSITDM 84 (164)
T ss_pred -CEEEEEEECCCH
Confidence 999999999854
No 174
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.07 E-value=1.4e-09 Score=89.02 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=53.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC-cccccCCCcc-cceEEEEEEec---CeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRAD-VDVQPYAFTT-KSLFVGHTDYK---YLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT-~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
+|+++|.+|||||||+++|.+.. .....+..|+ .+.....+.+. ...+++|||||.. ..+......+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE--------LYSDMVSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH--------HHHHHHHHHh
Confidence 68999999999999999998642 3344454433 22222333332 2478999999942 2222233445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
... |+++||+|+++.
T Consensus 74 ~~~-d~ii~v~d~~~~ 88 (164)
T cd04101 74 ESP-SVFILVYDVSNK 88 (164)
T ss_pred CCC-CEEEEEEECcCH
Confidence 544 999999999864
No 175
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.07 E-value=1.2e-09 Score=89.02 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=52.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
+|+++|.+|||||||++++.+.... ...| |.+.....+... +..+.+|||||... ........+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~~~- 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEK--------MRTVWKCYLENT- 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHh--------HHHHHHHHhccC-
Confidence 4789999999999999999987653 2233 222333334443 45789999999531 111222345554
Q ss_pred ceeEEEEeCCCC
Q 035873 249 SAVLFFLDISGS 260 (275)
Q Consensus 249 d~il~viD~s~~ 260 (275)
|+++||+|++++
T Consensus 69 ~~iv~v~D~~~~ 80 (160)
T cd04156 69 DGLVYVVDSSDE 80 (160)
T ss_pred CEEEEEEECCcH
Confidence 999999999865
No 176
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.06 E-value=1.5e-09 Score=92.25 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=56.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|..|||||||+.++.+........|..+.+.....+..++ ..+++|||||.. .........++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~--------~~~~l~~~~~~ 77 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG--------RFCTIFRSYSR 77 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH--------HHHHHHHHHhc
Confidence 46899999999999999999987654322122233344444455555 467899999953 22222223344
Q ss_pred hccceeEEEEeCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCG 262 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g 262 (275)
. +|++|+|+|.+++..
T Consensus 78 ~-ad~illVfD~t~~~S 93 (189)
T cd04121 78 G-AQGIILVYDITNRWS 93 (189)
T ss_pred C-CCEEEEEEECcCHHH
Confidence 4 499999999996543
No 177
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.06 E-value=1.4e-09 Score=108.99 Aligned_cols=97 Identities=10% Similarity=0.141 Sum_probs=66.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec----CeeEEEEeCCCCCCCCCCchhHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK----YLRYQVIDTPGILDRPFEDHNIIEMCSI 241 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~e~~~~ 241 (275)
.+.+.|+++|++|+|||||+++|.+..+.....++.|.+.....+.+. +..+.+|||||.. .+.....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe--------~F~~mr~ 313 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE--------AFSSMRS 313 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHH--------HHHHHHH
Confidence 467899999999999999999999877665555666665544444442 4789999999942 2222223
Q ss_pred HHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 242 TALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
..+.. +|++++|+|+++.......+.+..
T Consensus 314 rg~~~-aDiaILVVDA~dGv~~QT~E~I~~ 342 (742)
T CHL00189 314 RGANV-TDIAILIIAADDGVKPQTIEAINY 342 (742)
T ss_pred HHHHH-CCEEEEEEECcCCCChhhHHHHHH
Confidence 34444 499999999987554433344443
No 178
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.06 E-value=1.3e-09 Score=95.93 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=62.6
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc------cc------------cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD------VQ------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~------v~------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
.|+++|.+|+|||||+++|+..... +. ..-+.|.......+.|++.++.+|||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 4899999999999999999743211 11 11123445566777888999999999997641
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
......+++.. |++++|+|+++......+.-++.
T Consensus 78 -----~~~~~~~l~~a-D~~IlVvd~~~g~~~~~~~~~~~ 111 (237)
T cd04168 78 -----IAEVERSLSVL-DGAILVISAVEGVQAQTRILWRL 111 (237)
T ss_pred -----HHHHHHHHHHh-CeEEEEEeCCCCCCHHHHHHHHH
Confidence 12234566665 99999999997544333333333
No 179
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.06 E-value=8.6e-10 Score=91.26 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=50.6
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEE--ec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTD--YK--YLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~--~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
+|+++|.+|||||||++++..........| |.+....... .+ ...+.+|||||...... . ....+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~-------~~~~~~ 71 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVA--TLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-L-------RDGYYI 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-c-------cHHHhc
Confidence 689999999999999999986554322222 3332222222 22 34679999999643211 1 112233
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.+|++++|+|++++
T Consensus 72 -~~d~~i~v~d~~~~ 85 (166)
T cd00877 72 -GGQCAIIMFDVTSR 85 (166)
T ss_pred -CCCEEEEEEECCCH
Confidence 34999999999854
No 180
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.06 E-value=7.2e-10 Score=105.44 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=61.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCccc-------------------------------ccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDV-------------------------------QPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v-------------------------------~~~~~tT~~~~~~~~~~~~~~ 216 (275)
..+|+++|.+|+|||||+++|+.....+ ...+++|.+.....+.+++..
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~ 85 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYY 85 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeE
Confidence 4579999999999999999998432111 114789999999999998999
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
+.+|||||..+.. ......+.. +|++++|+|+++
T Consensus 86 i~liDtpG~~~~~--------~~~~~~~~~-aD~~ilVvDa~~ 119 (425)
T PRK12317 86 FTIVDCPGHRDFV--------KNMITGASQ-ADAAVLVVAADD 119 (425)
T ss_pred EEEEECCCcccch--------hhHhhchhc-CCEEEEEEEccc
Confidence 9999999953211 111233344 499999999997
No 181
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.05 E-value=2.2e-09 Score=94.46 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=60.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEE-----------E-------------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGH-----------T------------------------- 210 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~-----------~------------------------- 210 (275)
..+.++++|.+|+||||++++|+|..........+|+.+..-. +
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5678999999999999999999986421111111121111110 0
Q ss_pred -------------Eec---CeeEEEEeCCCCCCCCCC-----chhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 211 -------------DYK---YLRYQVIDTPGILDRPFE-----DHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 211 -------------~~~---~~~~~liDTpG~~~~~~~-----~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
+.. ..++.++||||+...+.. ....++.+...++++..+.||+|+|++...
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~ 176 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL 176 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC
Confidence 000 036789999999865322 223455667778887768999999998543
No 182
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.05 E-value=1.5e-09 Score=90.44 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=56.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+..... .+..|........+.+++. .+++|||||..+ +.......++.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~l~~~~~~~ 73 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHDPTIEDAYKQQARIDNEPALLDILDTAGQAE--------FTAMRDQYMRC 73 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcCCcccceEEEEEEECCEEEEEEEEeCCCchh--------hHHHhHHHhhc
Confidence 479999999999999999998766532 2222333333334555553 578999999642 12222334555
Q ss_pred ccceeEEEEeCCCCCCC
Q 035873 247 LRSAVLFFLDISGSCGY 263 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~ 263 (275)
. |++++|+|++++...
T Consensus 74 ~-d~~ilv~d~~~~~Sf 89 (172)
T cd04141 74 G-EGFIICYSVTDRHSF 89 (172)
T ss_pred C-CEEEEEEECCchhHH
Confidence 4 999999999976544
No 183
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.05 E-value=1.1e-09 Score=91.52 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=56.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+.... ..+..|........+.+++ ..+++|||||..+. .......+++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 72 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY--------DRLRPLSYPQ 72 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccch--------hhhhhhhccc
Confidence 47999999999999999999876653 3444444443333455555 46789999996431 1111234555
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|.+++.
T Consensus 73 a-~~~ilv~d~~~~~ 86 (175)
T cd01874 73 T-DVFLVCFSVVSPS 86 (175)
T ss_pred C-CEEEEEEECCCHH
Confidence 4 9999999998654
No 184
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.05 E-value=6.6e-10 Score=93.93 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=68.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc------------------cccCCCcccceEEEEEE--ecCeeEEEEeCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD------------------VQPYAFTTKSLFVGHTD--YKYLRYQVIDTPGILD 227 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~------------------v~~~~~tT~~~~~~~~~--~~~~~~~liDTpG~~~ 227 (275)
..+|+++|..++|||||+++|++.... .....+.|.......+. +.+..+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 357999999999999999999843211 11123567777777777 788999999999943
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.+.+....++... |++++|+|+.++......+.+.++.
T Consensus 82 -------~f~~~~~~~~~~~-D~ailvVda~~g~~~~~~~~l~~~~ 119 (188)
T PF00009_consen 82 -------DFIKEMIRGLRQA-DIAILVVDANDGIQPQTEEHLKILR 119 (188)
T ss_dssp -------HHHHHHHHHHTTS-SEEEEEEETTTBSTHHHHHHHHHHH
T ss_pred -------ceeecccceeccc-ccceeeeeccccccccccccccccc
Confidence 2333344555554 9999999999665555555555543
No 185
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.04 E-value=1.1e-09 Score=92.01 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=52.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-C--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
+|+++|.+|||||||++++.+...... +..|+.......+... + ..+++|||||..+ ........++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~ 72 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEE-YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE--------YDRLRPLSYPD 72 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCC-CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh--------HHHHHHHhCCC
Confidence 689999999999999999997765433 3233322223334443 2 3678999999432 11111223444
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|+++..
T Consensus 73 a-d~ii~v~d~~~~~ 86 (187)
T cd04132 73 V-DVLLICYAVDNPT 86 (187)
T ss_pred C-CEEEEEEECCCHH
Confidence 4 9999999998643
No 186
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.03 E-value=5.5e-10 Score=90.25 Aligned_cols=55 Identities=31% Similarity=0.364 Sum_probs=45.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILD 227 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~ 227 (275)
+++++|.+|||||||+|+|.+... .++..+++|+...... .+ ..+.+|||||+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF--LT-PTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE--eC-CCEEEEECCCcCC
Confidence 799999999999999999998775 5888888888765433 33 3689999999874
No 187
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.4e-09 Score=91.25 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=67.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..++|+++|-.|||||.|+-++.+....-.-..+...+.....+++++. .+|||||+|. .++.-.....+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ--------ERFrtit~syY 79 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ--------ERFRTITSSYY 79 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc--------HHHhhhhHhhc
Confidence 5678999999999999999999877655333333445556666667665 5799999995 23333344566
Q ss_pred HhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
+.+ ++||+|+|.|+.... ..--.+++|
T Consensus 80 R~a-hGii~vyDiT~~~SF--~~v~~Wi~E 106 (205)
T KOG0084|consen 80 RGA-HGIIFVYDITKQESF--NNVKRWIQE 106 (205)
T ss_pred cCC-CeEEEEEEcccHHHh--hhHHHHHHH
Confidence 665 999999999965444 433344444
No 188
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.03 E-value=1.4e-09 Score=91.75 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=55.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+........|+...+.....+..++ ..+++|||+|... ........+++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~--------~~~~~~~~~~~a 73 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE--------FINMLPLVCNDA 73 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh--------HHHhhHHHCcCC
Confidence 689999999999999999987665433333322333334555555 3679999999532 111112344544
Q ss_pred cceeEEEEeCCCCCC
Q 035873 248 RSAVLFFLDISGSCG 262 (275)
Q Consensus 248 ~d~il~viD~s~~~g 262 (275)
|++++|+|++++..
T Consensus 74 -~~iilv~D~t~~~s 87 (182)
T cd04128 74 -VAILFMFDLTRKST 87 (182)
T ss_pred -CEEEEEEECcCHHH
Confidence 99999999987643
No 189
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.02 E-value=1.3e-09 Score=87.39 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=49.3
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||+|+|.+.... ++. |. ...+.. .+|||||.... . ..+.......++.. |
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~~~~---~~iDt~G~~~~---~-~~~~~~~~~~~~~a-d 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVEYND---GAIDTPGEYVE---N-RRLYSALIVTAADA-D 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEEEcC---eeecCchhhhh---h-HHHHHHHHHHhhcC-C
Confidence 6899999999999999999987642 211 21 223322 68999996311 1 11111112334454 9
Q ss_pred eeEEEEeCCCCCCC
Q 035873 250 AVLFFLDISGSCGY 263 (275)
Q Consensus 250 ~il~viD~s~~~g~ 263 (275)
++++|+|++++...
T Consensus 65 ~vilv~d~~~~~s~ 78 (142)
T TIGR02528 65 VIALVQSATDPESR 78 (142)
T ss_pred EEEEEecCCCCCcC
Confidence 99999999876543
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.02 E-value=2.1e-09 Score=105.98 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=66.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.|+++|.+|+|||||+++|+|.... ....++.|.+.....+.+++..+.+|||||.. .+.+.....+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe--------~f~~~~~~g~~~ 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE--------KFISNAIAGGGG 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH--------HHHHHHHhhhcc
Confidence 6899999999999999999985422 22345678777777777888889999999932 222233444455
Q ss_pred ccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 247 LRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
. |++++|+|++++......+.+.++
T Consensus 74 a-D~aILVVDa~~G~~~qT~ehl~il 98 (581)
T TIGR00475 74 I-DAALLVVDADEGVMTQTGEHLAVL 98 (581)
T ss_pred C-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 4 999999999975433444444443
No 191
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.02 E-value=2.4e-09 Score=92.03 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=56.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-----C--eeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-----Y--LRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-----~--~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
+|+++|.++||||||++++.+........|+...+.....+.++ + ..+++|||+|..+ .......
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~--------~~~l~~~ 73 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES--------VKSTRAV 73 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh--------HHHHHHH
Confidence 68999999999999999999876654433333223333444442 2 3579999999532 2222234
Q ss_pred HHHhccceeEEEEeCCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~g 262 (275)
.++.. |++++|+|.++...
T Consensus 74 ~yr~a-d~iIlVyDvtn~~S 92 (202)
T cd04102 74 FYNQV-NGIILVHDLTNRKS 92 (202)
T ss_pred HhCcC-CEEEEEEECcChHH
Confidence 55555 99999999996543
No 192
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.02 E-value=1.8e-10 Score=100.49 Aligned_cols=94 Identities=26% Similarity=0.387 Sum_probs=80.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
..+++++|+|.+||||+++.|+|-..++++|-|||.....|...+++..+|+.|.||+++...+.+... ++ +.+.+..
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg-~q-viavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG-KQ-VIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc-cE-EEEEeec
Confidence 358999999999999999999999999999999999999999999999999999999999988765554 22 3344444
Q ss_pred cceeEEEEeCCCCCCC
Q 035873 248 RSAVLFFLDISGSCGY 263 (275)
Q Consensus 248 ~d~il~viD~s~~~g~ 263 (275)
+++|++|+|+-.+.++
T Consensus 137 cnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSH 152 (358)
T ss_pred ccEEEEEeeccCcccH
Confidence 5899999999988765
No 193
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.02 E-value=2.1e-09 Score=93.28 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=55.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||++++..........|+...+.....+..+ ...+.+|||||.... .......
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------hhhhHHH
Confidence 456789999999999999999987665543222322222222233333 347899999996431 1111223
Q ss_pred HHhccceeEEEEeCCCCCC
Q 035873 244 LAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 244 l~~~~d~il~viD~s~~~g 262 (275)
++.. |++|+|+|.++...
T Consensus 83 ~~~~-~~~ilvfD~~~~~s 100 (219)
T PLN03071 83 YIHG-QCAIIMFDVTARLT 100 (219)
T ss_pred cccc-cEEEEEEeCCCHHH
Confidence 4444 99999999997643
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.01 E-value=2.3e-09 Score=105.52 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=58.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec------------------CeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------------YLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTpG~~~~ 228 (275)
+++.|+++|.+|+|||||+|+|++..+......++|.+.....+.+. ...+.+|||||...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 56789999999999999999999886643333334543222222111 12388999999531
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
+.......++ .+|++++|+|+++.......+.+.+
T Consensus 82 -------f~~l~~~~~~-~aD~~IlVvD~~~g~~~qt~e~i~~ 116 (590)
T TIGR00491 82 -------FTNLRKRGGA-LADLAILIVDINEGFKPQTQEALNI 116 (590)
T ss_pred -------HHHHHHHHHh-hCCEEEEEEECCcCCCHhHHHHHHH
Confidence 1111223334 3599999999996443333333333
No 195
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.01 E-value=2.9e-09 Score=91.36 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=53.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe----cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY----KYLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
+.|+++|.+|||||||+++|.+..... .++.+ ......+.. .+..+.+|||||... +.......+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t~~s~--~~~~~~~~~~~~~~~~~~~l~D~pG~~~--------~~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-TVTSI--EPNVATFILNSEGKGKKFRLVDVPGHPK--------LRDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-ccCcE--eecceEEEeecCCCCceEEEEECCCCHH--------HHHHHHHHH
Confidence 368999999999999999998765421 12222 223333333 256799999999542 222223445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
++..++++||+|++..
T Consensus 70 ~~~~~~vV~VvD~~~~ 85 (203)
T cd04105 70 KNSAKGIVFVVDSATF 85 (203)
T ss_pred hccCCEEEEEEECccc
Confidence 5544899999999864
No 196
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.00 E-value=2.4e-09 Score=93.06 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=54.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCccc-ceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTK-SLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
+|+++|.+|||||||++++.+.......++.+.. +.....+.+++ ..+++|||||... .. ....+..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-------~~---~~~~~~~ 71 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM-------WT---EDSCMQY 71 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch-------HH---HhHHhhc
Confidence 6899999999999999999766554334433221 34444455543 5689999999651 01 1122331
Q ss_pred ccceeEEEEeCCCCCC
Q 035873 247 LRSAVLFFLDISGSCG 262 (275)
Q Consensus 247 ~~d~il~viD~s~~~g 262 (275)
.+|++++|+|++++..
T Consensus 72 ~ad~iilV~d~td~~S 87 (221)
T cd04148 72 QGDAFVVVYSVTDRSS 87 (221)
T ss_pred CCCEEEEEEECCCHHH
Confidence 4599999999997643
No 197
>CHL00071 tufA elongation factor Tu
Probab=99.00 E-value=2.4e-09 Score=101.40 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=67.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc----------------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD----------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~----------------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
....|+++|.+|+|||||+|+|++.... .....++|.+.....+.+++.++.++||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 3467999999999999999999864211 11226677777666666777889999999942
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.+-...+..+... |++++|+|+++.......+.+.++
T Consensus 87 ----~~~~~~~~~~~~~-D~~ilVvda~~g~~~qt~~~~~~~ 123 (409)
T CHL00071 87 ----DYVKNMITGAAQM-DGAILVVSAADGPMPQTKEHILLA 123 (409)
T ss_pred ----HHHHHHHHHHHhC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 2223335666665 999999999965444344444443
No 198
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.00 E-value=2.4e-09 Score=107.63 Aligned_cols=95 Identities=22% Similarity=0.122 Sum_probs=68.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc------cccc------------CCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV------DVQP------------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~------~v~~------------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
+..+|+++|.+|+|||||+|+|....- .+.+ ..++|.+.....+.|++.++.+|||||..+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 345899999999999999999963211 1111 3567888888999999999999999998652
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
. . ....+++.. |++++|+|+++......+..+.
T Consensus 89 ~----~----~~~~~l~~~-D~~ilVvda~~g~~~~~~~~~~ 121 (689)
T TIGR00484 89 T----V----EVERSLRVL-DGAVAVLDAVGGVQPQSETVWR 121 (689)
T ss_pred h----H----HHHHHHHHh-CEEEEEEeCCCCCChhHHHHHH
Confidence 1 1 234566666 9999999999654433333333
No 199
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.00 E-value=1.4e-09 Score=89.86 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=52.1
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
|+++|.+|||||||++++.+........| +........+..++. .+++|||||..+.. ......++. +
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~-~ 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-TVFENYSADVEVDGKPVELGLWDTAGQEDYD--------RLRPLSYPD-T 70 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC-cEEeeeeEEEEECCEEEEEEEEECCCCcccc--------hhchhhcCC-C
Confidence 58999999999999999998765332222 333333334445554 57899999964211 011123344 4
Q ss_pred ceeEEEEeCCCC
Q 035873 249 SAVLFFLDISGS 260 (275)
Q Consensus 249 d~il~viD~s~~ 260 (275)
|++++|+|.++.
T Consensus 71 d~~ilv~d~~~~ 82 (174)
T smart00174 71 DVFLICFSVDSP 82 (174)
T ss_pred CEEEEEEECCCH
Confidence 999999999854
No 200
>PRK09866 hypothetical protein; Provisional
Probab=99.00 E-value=4.7e-09 Score=102.49 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=29.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccc-cCCCccc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQ-PYAFTTK 203 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~-~~~~tT~ 203 (275)
+.++++|++|+|||||+|+|.|..+... +.++|+.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 6899999999999999999999887633 5666555
No 201
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.99 E-value=8.6e-10 Score=92.00 Aligned_cols=58 Identities=31% Similarity=0.413 Sum_probs=47.5
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCC
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL 226 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~ 226 (275)
+...+++++|.+|||||||+|+|.+... .+++.++||.......+ . ..++++||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~--~-~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI--S-PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe--c-CCEEEEECCCCC
Confidence 3456899999999999999999998775 58888999988765443 2 578999999974
No 202
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.99 E-value=6.2e-10 Score=86.48 Aligned_cols=83 Identities=19% Similarity=0.127 Sum_probs=50.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc----cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD----VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~----v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
+|+++|.+|||||||+++|.+.... ..+....+.......+......+.+||++|........ ...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--------QFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--------HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--------cchhh
Confidence 5899999999999999999977654 12222223222222222233457899999963221111 12245
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. |++++|+|++++.
T Consensus 73 ~~-d~~ilv~D~s~~~ 87 (119)
T PF08477_consen 73 KA-DAVILVYDLSDPE 87 (119)
T ss_dssp HS-CEEEEEEECCGHH
T ss_pred cC-cEEEEEEcCCChH
Confidence 54 9999999999653
No 203
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.99 E-value=2.7e-09 Score=92.90 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=54.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||++++.+.+... ..| |.+.......+....+.+|||||.... .......++.. |
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~~~~~~~a-d 69 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS--TVGGAFYLKQWGPYNISIWDTAGREQF--------HGLGSMYCRGA-A 69 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC--ccceEEEEEEeeEEEEEEEeCCCcccc--------hhhHHHHhccC-C
Confidence 68999999999999999999877542 233 333333333445567899999996421 11122334554 9
Q ss_pred eeEEEEeCCCCC
Q 035873 250 AVLFFLDISGSC 261 (275)
Q Consensus 250 ~il~viD~s~~~ 261 (275)
++|+|+|++++.
T Consensus 70 ~~IlV~Dvt~~~ 81 (220)
T cd04126 70 AVILTYDVSNVQ 81 (220)
T ss_pred EEEEEEECCCHH
Confidence 999999999654
No 204
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.99 E-value=2.8e-09 Score=87.58 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=52.1
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+++|++.+......| +............+ ..+++|||||..+... + ....++ .
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----~---~~~~~~-~ 71 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-----L---RPLSYP-N 71 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----c---chhhcC-C
Confidence 689999999999999999998775322222 22222222333333 4689999999764211 1 011223 3
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
+|++++|+|++++
T Consensus 72 ~~~~i~v~d~~~~ 84 (171)
T cd00157 72 TDVFLICFSVDSP 84 (171)
T ss_pred CCEEEEEEECCCH
Confidence 4999999999864
No 205
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.99 E-value=2.1e-09 Score=88.58 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=51.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe--cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY--KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+|++.+.... ..+|.++... .....+ .+.++++|||||..... . .....+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~----~----~~~~~~~~- 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDR----A----NLAAEIRK- 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhh----H----HHhhhccc-
Confidence 6899999999999999999876643 2244332222 222223 34578899999964211 1 11233444
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
+|++++|+|++++
T Consensus 71 ad~~ilv~d~~~~ 83 (166)
T cd01893 71 ANVICLVYSVDRP 83 (166)
T ss_pred CCEEEEEEECCCH
Confidence 4999999999854
No 206
>PRK14974 cell division protein FtsY; Provisional
Probab=98.99 E-value=1.9e-09 Score=99.27 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=64.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc------CCcccccCCCcccc--------------eEEE-E---------------E
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR------ADVDVQPYAFTTKS--------------LFVG-H---------------T 210 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~~~tT~~--------------~~~~-~---------------~ 210 (275)
++..|+++|.||+||||++.+|.. .++.+...+..+.+ +... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 356899999999999999888862 22321111110000 0000 0 0
Q ss_pred EecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 211 DYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 211 ~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
...+.++.+|||||......+.+.++.+.. .. -.+|.+++|+|++ .|++..+|++.|.+
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~-~~--~~pd~~iLVl~a~--~g~d~~~~a~~f~~ 277 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIV-RV--TKPDLVIFVGDAL--AGNDAVEQAREFNE 277 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHH-Hh--hCCceEEEeeccc--cchhHHHHHHHHHh
Confidence 112357899999999876655555553321 11 1258899999997 68999999988864
No 207
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.98 E-value=3.7e-09 Score=88.85 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=54.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+.... ..+..|........+.+++. .+++|||||... ........++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~--------~~~~~~~~~~~ 72 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY--------YDNVRPLCYPD 72 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchh--------hhhcchhhcCC
Confidence 37999999999999999999876543 23333332333334455544 578999999532 11111233444
Q ss_pred ccceeEEEEeCCCCCC
Q 035873 247 LRSAVLFFLDISGSCG 262 (275)
Q Consensus 247 ~~d~il~viD~s~~~g 262 (275)
. |++++|+|.+++..
T Consensus 73 a-~~~ilvfdit~~~S 87 (178)
T cd04131 73 S-DAVLICFDISRPET 87 (178)
T ss_pred C-CEEEEEEECCChhh
Confidence 4 99999999996543
No 208
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.6e-09 Score=84.52 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.++|++||..|||||.|+.+++..-...+...+...+.....+++++. ++|+|||+|. ..+.-.+...++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq--------erfrsitqsyyr 78 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ--------ERFRSITQSYYR 78 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch--------HHHHHHHHHHhh
Confidence 468999999999999999999976654444444556667777777765 5799999994 334444556666
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.. +++++|.|.| |..+..=--++++|
T Consensus 79 sa-halilvydis--cqpsfdclpewlre 104 (213)
T KOG0095|consen 79 SA-HALILVYDIS--CQPSFDCLPEWLRE 104 (213)
T ss_pred hc-ceEEEEEecc--cCcchhhhHHHHHH
Confidence 65 9999999999 55554444444444
No 209
>PRK12739 elongation factor G; Reviewed
Probab=98.97 E-value=3.1e-09 Score=106.92 Aligned_cols=95 Identities=21% Similarity=0.141 Sum_probs=69.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC---cc---cc------------cCCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD---VD---VQ------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~---~~---v~------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
...+|+++|.+|+|||||+++|.... .. +. ...++|.+.....+.|++.++.++||||..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 34589999999999999999996321 11 11 2457888888889999999999999999643
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
+...+..+++.+ |++++|+|+++......+..+.
T Consensus 86 -------f~~e~~~al~~~-D~~ilVvDa~~g~~~qt~~i~~ 119 (691)
T PRK12739 86 -------FTIEVERSLRVL-DGAVAVFDAVSGVEPQSETVWR 119 (691)
T ss_pred -------HHHHHHHHHHHh-CeEEEEEeCCCCCCHHHHHHHH
Confidence 222356777777 9999999998654333333333
No 210
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.97 E-value=9e-10 Score=102.61 Aligned_cols=57 Identities=30% Similarity=0.441 Sum_probs=46.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC------cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD------VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
..++++|.||||||||+|+|++.. +.++++|+||++.....+ +..+.++||||+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 489999999999999999999753 368999999988764433 245689999999864
No 211
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.96 E-value=6.2e-09 Score=90.30 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=59.6
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC---c----------------------------ccccCCCcccceEEEEEEecCeeEE
Q 035873 170 TILICWYPNVGKSSFMNKITRAD---V----------------------------DVQPYAFTTKSLFVGHTDYKYLRYQ 218 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~---~----------------------------~v~~~~~tT~~~~~~~~~~~~~~~~ 218 (275)
.|+++|.+++|||||+.+|.... . ......++|.+.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999985210 0 0112357788888889999999999
Q ss_pred EEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 219 VIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 219 liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
+|||||..+ +.......+.. +|++++|+|+++.
T Consensus 81 liDtpG~~~--------~~~~~~~~~~~-~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRD--------FVPNMITGASQ-ADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHH--------HHHHHHHHhhh-CCEEEEEEECCCC
Confidence 999999532 11222344444 4999999999973
No 212
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.96 E-value=1.2e-09 Score=91.49 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=61.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
....+|+++|.+|+||||++++|....... .. .|.+.....+.+++..+.+||.+|-.. .+..+ ...+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~--pT~g~~~~~i~~~~~~~~~~d~gG~~~----~~~~w----~~y~~ 80 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TI--PTIGFNIEEIKYKGYSLTIWDLGGQES----FRPLW----KSYFQ 80 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EE--EESSEEEEEEEETTEEEEEEEESSSGG----GGGGG----GGGHT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cC--cccccccceeeeCcEEEEEEecccccc----ccccc----eeecc
Confidence 356789999999999999999998655331 22 367777888889999999999999532 11222 12344
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |+++||+|+++.
T Consensus 81 ~~-~~iIfVvDssd~ 94 (175)
T PF00025_consen 81 NA-DGIIFVVDSSDP 94 (175)
T ss_dssp TE-SEEEEEEETTGG
T ss_pred cc-ceeEEEEecccc
Confidence 44 999999999965
No 213
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.95 E-value=1.1e-08 Score=83.51 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=64.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
..+|.++|..|+||||++++|.+..+. +.| |.+.+...+.+++.++++||..|.. .+.....+..+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~--------~lr~~W~nYfes 83 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQK--------TLRSYWKNYFES 83 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcc--------hhHHHHHHhhhc
Confidence 458999999999999999999988865 444 7788888889999999999999954 222223455555
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |+++||+|.|+.
T Consensus 84 t-dglIwvvDssD~ 96 (185)
T KOG0073|consen 84 T-DGLIWVVDSSDR 96 (185)
T ss_pred c-CeEEEEEECchH
Confidence 5 999999999864
No 214
>PRK00007 elongation factor G; Reviewed
Probab=98.95 E-value=4.4e-09 Score=105.80 Aligned_cols=96 Identities=21% Similarity=0.161 Sum_probs=69.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHh---cCCcc---cc------------cCCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT---RADVD---VQ------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~---~~~~~---v~------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
+..+|+++|.+|+|||||+|+|. |.... +. ...++|.+.....+.|.+..+.++||||..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 34589999999999999999996 32111 11 2467888888888999999999999999653
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
.......+++.+ |++++|+|+++.........+..
T Consensus 88 -------f~~ev~~al~~~-D~~vlVvda~~g~~~qt~~~~~~ 122 (693)
T PRK00007 88 -------FTIEVERSLRVL-DGAVAVFDAVGGVEPQSETVWRQ 122 (693)
T ss_pred -------HHHHHHHHHHHc-CEEEEEEECCCCcchhhHHHHHH
Confidence 122245677776 99999999986654433444433
No 215
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.94 E-value=4.8e-09 Score=87.63 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=53.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+.++.+.... ..+..|........+..++ ..+++|||||..+. .......+++.
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~~ 73 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--------DRLRPLSYPQT 73 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh--------hhhhhhhcCCC
Confidence 6899999999999999999876543 2332333333333344544 46789999995321 11122345554
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++|+|+|++++.
T Consensus 74 -d~~ilv~d~~~~~ 86 (174)
T cd01871 74 -DVFLICFSLVSPA 86 (174)
T ss_pred -CEEEEEEECCCHH
Confidence 9999999999754
No 216
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.93 E-value=3.3e-09 Score=95.43 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=43.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCccccc---------CCCcc-cceEEEEEEecC--eeEEEEeCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQP---------YAFTT-KSLFVGHTDYKY--LRYQVIDTPGILDRP 229 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~---------~~~tT-~~~~~~~~~~~~--~~~~liDTpG~~~~~ 229 (275)
..+|+++|.+|+|||||+|+|.+....... .+.|+ .......+..++ .++.+|||||+.+..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 458999999999999999999988754321 22222 233333444455 368999999998754
No 217
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.92 E-value=6.9e-09 Score=90.42 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=54.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++++..... .|..|........+.+++. .+.+|||+|.. .+.......++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~-~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e--------~~~~l~~~~~~~ 72 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG-SYVPTVFENYTASFEIDKRRIELNMWDTSGSS--------YYDNVRPLAYPD 72 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-ccCCccccceEEEEEECCEEEEEEEEeCCCcH--------HHHHHhHHhccC
Confidence 378999999999999999999765432 3333333333334555554 57889999943 222222234455
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++|+|+|.+++
T Consensus 73 ~-d~illvfdis~~ 85 (222)
T cd04173 73 S-DAVLICFDISRP 85 (222)
T ss_pred C-CEEEEEEECCCH
Confidence 4 999999999965
No 218
>PLN03127 Elongation factor Tu; Provisional
Probab=98.92 E-value=9e-09 Score=98.46 Aligned_cols=97 Identities=14% Similarity=0.042 Sum_probs=67.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC------Ccc----------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA------DVD----------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~------~~~----------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
....|+++|.+++|||||+++|++. ... ....+++|.+.....+++++.++.++||||..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 3457999999999999999999732 110 122367888887777777788999999999642
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
+.......+.. +|++++|+|+++.......+.+.++
T Consensus 137 -----f~~~~~~g~~~-aD~allVVda~~g~~~qt~e~l~~~ 172 (447)
T PLN03127 137 -----YVKNMITGAAQ-MDGGILVVSAPDGPMPQTKEHILLA 172 (447)
T ss_pred -----hHHHHHHHHhh-CCEEEEEEECCCCCchhHHHHHHHH
Confidence 22223344455 5999999999865443334444443
No 219
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.92 E-value=9.5e-09 Score=86.75 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=55.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+.... ..+..|........+..++. .+++|||+|... ........++
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~--------~~~~~~~~~~ 75 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY--------YDNVRPLSYP 75 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEECCEEEEEEEEECCCchh--------hHhhhhhhcC
Confidence 457999999999999999999876543 23333333333334445544 579999999531 1112223445
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. |++++|+|.+++.
T Consensus 76 ~a-d~~ilvyDit~~~ 90 (182)
T cd04172 76 DS-DAVLICFDISRPE 90 (182)
T ss_pred CC-CEEEEEEECCCHH
Confidence 54 9999999999663
No 220
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.92 E-value=3.1e-09 Score=87.02 Aligned_cols=56 Identities=29% Similarity=0.386 Sum_probs=42.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
...+++++|.+|+||||++|+|.+... .+++.+++|...... . .+..+++|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~--~-~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--K-ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE--E-cCCCEEEEECcCC
Confidence 456789999999999999999997664 467777777654322 2 2347899999996
No 221
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.91 E-value=3.8e-09 Score=87.69 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=55.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+++++|.+|+|||||++++.+... ...++.|+.+.....+..++ ..+++|||||..... . .....++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----~---~~~~~~~~- 71 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD-----K---LRPLCYPD- 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhc-----c---ccccccCC-
Confidence 689999999999999999986543 34455555555445555555 367889999963211 0 11123344
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
+|++++|+|++++.
T Consensus 72 a~~~i~v~d~~~~~ 85 (173)
T cd04130 72 TDVFLLCFSVVNPS 85 (173)
T ss_pred CcEEEEEEECCCHH
Confidence 49999999999654
No 222
>PRK13796 GTPase YqeH; Provisional
Probab=98.91 E-value=1.3e-09 Score=101.64 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=44.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC------CcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~------~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
..+.++|.||||||||||+|.+. .+.+++.|+||++.....+ + ....++||||+..+
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~~~ 223 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGIIHR 223 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-CCcEEEECCCcccc
Confidence 47899999999999999999853 2347899999998765443 2 23579999999753
No 223
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.91 E-value=3.5e-09 Score=87.50 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=52.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|+|||||++++.+.... ..+..|+.+.....+.+++. .+.+|||||..+... .....++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~- 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR--------LRPLSYPM- 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------cccccCCC-
Confidence 6899999999999999999877643 23333333333334445554 467899999643211 01112333
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
.|++++|+|.+++.
T Consensus 72 ~~~~ilv~~~~~~~ 85 (174)
T cd04135 72 TDVFLICFSVVNPA 85 (174)
T ss_pred CCEEEEEEECCCHH
Confidence 38999999998653
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=98.90 E-value=9.6e-09 Score=96.93 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=64.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC-----Ccc-----------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA-----DVD-----------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~-----~~~-----------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
...+|+++|.+++|||||+++|++. ... .....++|.+.....+.+++.++.++||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 3457999999999999999999862 100 11135667776666666677789999999952
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.+-......+... |++++|+|+++.......+.+.++
T Consensus 87 ----~f~~~~~~~~~~a-D~~llVvda~~g~~~qt~e~l~~~ 123 (396)
T PRK12735 87 ----DYVKNMITGAAQM-DGAILVVSAADGPMPQTREHILLA 123 (396)
T ss_pred ----HHHHHHHhhhccC-CEEEEEEECCCCCchhHHHHHHHH
Confidence 2223334455544 999999999875433333444443
No 225
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.90 E-value=5.9e-09 Score=86.22 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=54.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||++++.+.... ..+..|........+.+++. .+.+|||||..+.. ......+..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD--------RLRPLSYPD 72 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhh--------hccccccCC
Confidence 47999999999999999999976543 22333333333455556554 56899999964211 111122333
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
+|++++|+|+++..
T Consensus 73 -~d~~i~v~~~~~~~ 86 (175)
T cd01870 73 -TDVILMCFSIDSPD 86 (175)
T ss_pred -CCEEEEEEECCCHH
Confidence 38999999998653
No 226
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.89 E-value=1.2e-08 Score=100.60 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=56.6
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccce--EEEEEEe----------------cCeeEEEEeCCCCC
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSL--FVGHTDY----------------KYLRYQVIDTPGIL 226 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~--~~~~~~~----------------~~~~~~liDTpG~~ 226 (275)
..+++.|+++|.+|+|||||+|+|++..+......+.|.+. ......+ ....+.+|||||..
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 35678999999999999999999987654322222222221 1111000 00137899999964
Q ss_pred CCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 227 DRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
+ +........+. +|++++|+|+++.......+.+.+
T Consensus 83 ~--------f~~~~~~~~~~-aD~~IlVvDa~~g~~~qt~e~i~~ 118 (586)
T PRK04004 83 A--------FTNLRKRGGAL-ADIAILVVDINEGFQPQTIEAINI 118 (586)
T ss_pred H--------HHHHHHHhHhh-CCEEEEEEECCCCCCHhHHHHHHH
Confidence 2 11111223333 499999999996543333333333
No 227
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.89 E-value=7.6e-09 Score=84.38 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=56.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.++||||||++++.+........|+...+.....+..++. .+++|||+|.. .++......++..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~--------~~~~~~~~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE--------RFDSLRDIFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG--------GGHHHHHHHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccc--------ccccccccccccc
Confidence 5899999999999999999977644333333224555566666555 57899999942 2222223445555
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++++|+|.+++
T Consensus 73 -~~~ii~fd~~~~ 84 (162)
T PF00071_consen 73 -DAIIIVFDVTDE 84 (162)
T ss_dssp -SEEEEEEETTBH
T ss_pred -cccccccccccc
Confidence 999999999854
No 228
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.89 E-value=1.2e-08 Score=87.98 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=53.3
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccc----------cC---------CCcccceEEEEEEec-----CeeEEEEeCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQ----------PY---------AFTTKSLFVGHTDYK-----YLRYQVIDTPGI 225 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~----------~~---------~~tT~~~~~~~~~~~-----~~~~~liDTpG~ 225 (275)
+|+++|.+|+|||||+++|.+...... .+ .+.|.......+.+. ...+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999985432211 00 122322223333332 256899999997
Q ss_pred CCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 226 LDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
.+. .......+... |++++|+|++....
T Consensus 82 ~~f--------~~~~~~~~~~a-D~~llVvD~~~~~~ 109 (213)
T cd04167 82 VNF--------MDEVAAALRLS-DGVVLVVDVVEGVT 109 (213)
T ss_pred cch--------HHHHHHHHHhC-CEEEEEEECCCCCC
Confidence 532 12234555655 99999999986543
No 229
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.88 E-value=7.6e-09 Score=81.28 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=52.3
Q ss_pred eeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe--cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccce
Q 035873 173 ICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY--KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSA 250 (275)
Q Consensus 173 ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (275)
++|.+|+|||||+|+|.+..........|........... .+..+.+|||||..+... .....+.. .|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~-~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS--------LRRLYYRG-ADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh--------HHHHHhcC-CCE
Confidence 5799999999999999987763333333333333333332 256789999999653211 11223333 499
Q ss_pred eEEEEeCCCCCC
Q 035873 251 VLFFLDISGSCG 262 (275)
Q Consensus 251 il~viD~s~~~g 262 (275)
+++|+|++.+..
T Consensus 72 ~i~v~d~~~~~~ 83 (157)
T cd00882 72 IILVYDVTDRES 83 (157)
T ss_pred EEEEEECcCHHH
Confidence 999999996543
No 230
>PLN00023 GTP-binding protein; Provisional
Probab=98.88 E-value=1.1e-08 Score=93.23 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=56.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC---------------eeEEEEeCCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY---------------LRYQVIDTPGILDRPFE 231 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~---------------~~~~liDTpG~~~~~~~ 231 (275)
...+|+++|..|||||||++++.+........|+...+....++.+++ ..++||||+|...
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr---- 95 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER---- 95 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh----
Confidence 446899999999999999999997765433333333333344455532 3589999999532
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
+....-..++.. |++|+|+|.++.
T Consensus 96 ----frsL~~~yyr~A-dgiILVyDITdr 119 (334)
T PLN00023 96 ----YKDCRSLFYSQI-NGVIFVHDLSQR 119 (334)
T ss_pred ----hhhhhHHhccCC-CEEEEEEeCCCH
Confidence 111222345554 999999999964
No 231
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.87 E-value=1.8e-08 Score=88.32 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=55.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+..... .|..|........+..++ ..+++|||||.. .+.......++
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e--------~~~~~~~~~~~ 83 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTAGLETEEQRVELSLWDTSGSP--------YYDNVRPLCYS 83 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCC-CcCCceeeeeEEEEEECCEEEEEEEEeCCCch--------hhHHHHHHHcC
Confidence 4589999999999999999998765432 232232222233344444 367999999943 12222233455
Q ss_pred hccceeEEEEeCCCCC
Q 035873 246 HLRSAVLFFLDISGSC 261 (275)
Q Consensus 246 ~~~d~il~viD~s~~~ 261 (275)
.. |++++|+|.+++.
T Consensus 84 ~a-d~vIlVyDit~~~ 98 (232)
T cd04174 84 DS-DAVLLCFDISRPE 98 (232)
T ss_pred CC-cEEEEEEECCChH
Confidence 54 9999999999653
No 232
>PRK00049 elongation factor Tu; Reviewed
Probab=98.87 E-value=1.3e-08 Score=95.96 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=65.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-------c---------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-------D---------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-------~---------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
...+|+++|.+++|||||+++|++... . .....++|.+.....+.+++.++.++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 345799999999999999999986311 0 11145677777666666677889999999953
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.+.......+.. +|++++|+|++.+......+.+.++
T Consensus 87 ----~f~~~~~~~~~~-aD~~llVVDa~~g~~~qt~~~~~~~ 123 (396)
T PRK00049 87 ----DYVKNMITGAAQ-MDGAILVVSAADGPMPQTREHILLA 123 (396)
T ss_pred ----HHHHHHHhhhcc-CCEEEEEEECCCCCchHHHHHHHHH
Confidence 222333445544 4999999999865444444444443
No 233
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.86 E-value=1.1e-08 Score=85.96 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=55.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||+.++........ +..|..+.....+..++ ..+++|||+|..+.. ......+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~-~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLRPLSYRG 72 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCcceeeeEEEEEECCEEEEEEEEECCCCcccc--------ccchhhcCC
Confidence 3789999999999999999997665433 33333333333344554 367899999964321 111234555
Q ss_pred ccceeEEEEeCCCCCC
Q 035873 247 LRSAVLFFLDISGSCG 262 (275)
Q Consensus 247 ~~d~il~viD~s~~~g 262 (275)
. |++|+|+|.+++..
T Consensus 73 a-~~~ilvyd~~~~~S 87 (176)
T cd04133 73 A-DVFVLAFSLISRAS 87 (176)
T ss_pred C-cEEEEEEEcCCHHH
Confidence 5 99999999996644
No 234
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.85 E-value=9.2e-09 Score=86.95 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=52.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||++++.+...... +..|........+..++ ..+++|||||..+.. .+ ....++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-----~l---~~~~~~~- 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD-----RL---RSLSYAD- 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc-----cc---ccccccC-
Confidence 689999999999999999997765322 22222222223334444 467999999964311 11 1122344
Q ss_pred cceeEEEEeCCCCCC
Q 035873 248 RSAVLFFLDISGSCG 262 (275)
Q Consensus 248 ~d~il~viD~s~~~g 262 (275)
+|++++|+|.++...
T Consensus 72 a~~~ilv~dv~~~~s 86 (189)
T cd04134 72 TDVIMLCFSVDSPDS 86 (189)
T ss_pred CCEEEEEEECCCHHH
Confidence 389999999986643
No 235
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.85 E-value=2.5e-08 Score=86.96 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=58.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccc----------------cCCCcccceEEEEEEec----------CeeEEEEeCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQ----------------PYAFTTKSLFVGHTDYK----------YLRYQVIDTP 223 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~----------------~~~~tT~~~~~~~~~~~----------~~~~~liDTp 223 (275)
.|+++|..++|||||+++|....-.+. ..-+.|.......+.|. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321110 00122333333333443 4578899999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 224 GILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 224 G~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
|..+ +......+++.. |++++|+|++++........++
T Consensus 82 G~~~--------f~~~~~~~l~~a-D~~ilVvD~~~g~~~~t~~~l~ 119 (222)
T cd01885 82 GHVD--------FSSEVTAALRLC-DGALVVVDAVEGVCVQTETVLR 119 (222)
T ss_pred Cccc--------cHHHHHHHHHhc-CeeEEEEECCCCCCHHHHHHHH
Confidence 9764 222345666666 9999999999765444333333
No 236
>PRK12736 elongation factor Tu; Reviewed
Probab=98.85 E-value=2.5e-08 Score=94.11 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=65.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc----------------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD----------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~----------------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
...+|+++|.+++|||||+++|++.... .....++|.+.....+..++.++.++||||..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence 3457999999999999999999863110 11135677777665665667789999999942
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.+.......+... |++++|+|++++......+.+.++
T Consensus 87 ----~f~~~~~~~~~~~-d~~llVvd~~~g~~~~t~~~~~~~ 123 (394)
T PRK12736 87 ----DYVKNMITGAAQM-DGAILVVAATDGPMPQTREHILLA 123 (394)
T ss_pred ----HHHHHHHHHHhhC-CEEEEEEECCCCCchhHHHHHHHH
Confidence 2223334455544 999999999865444444444443
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.84 E-value=1.5e-08 Score=101.13 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=59.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccc-----------cC----------------------CCcccceEEEEEEecC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQ-----------PY----------------------AFTTKSLFVGHTDYKY 214 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~-----------~~----------------------~~tT~~~~~~~~~~~~ 214 (275)
..+|+++|.+|+|||||+|+|+...-.+. .. .+.|.+.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 45799999999999999999985432111 11 2345556666777788
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCC
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~ 263 (275)
.++.++||||.. .+.+.....+... |++++|+|++++...
T Consensus 104 ~~~~liDtPG~~--------~f~~~~~~~~~~a-D~~llVvda~~g~~~ 143 (632)
T PRK05506 104 RKFIVADTPGHE--------QYTRNMVTGASTA-DLAIILVDARKGVLT 143 (632)
T ss_pred ceEEEEECCChH--------HHHHHHHHHHHhC-CEEEEEEECCCCccc
Confidence 899999999942 1222223445544 999999999865433
No 238
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.84 E-value=1.1e-08 Score=87.21 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=47.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc--ccc---CCCcccceEEEEEEe-cCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD--VQP---YAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~--v~~---~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
.+|+++|.+|||||||+|+|+|.... ... ...+|.... .+.. ....+.+|||||+.+..... ..+.+ ..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~-~~~l~--~~ 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPP-DDYLE--EM 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCH-HHHHH--Hh
Confidence 47999999999999999999985421 111 111222211 1111 12468999999987643322 22211 11
Q ss_pred HHHhccceeEEEEeC
Q 035873 243 ALAHLRSAVLFFLDI 257 (275)
Q Consensus 243 ~l~~~~d~il~viD~ 257 (275)
.+... |++++|.|.
T Consensus 77 ~~~~~-d~~l~v~~~ 90 (197)
T cd04104 77 KFSEY-DFFIIISST 90 (197)
T ss_pred CccCc-CEEEEEeCC
Confidence 22333 788887553
No 239
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.84 E-value=2.2e-08 Score=95.29 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=61.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC--cc-----------------------------cccCCCcccceEEEEEEecCe
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD--VD-----------------------------VQPYAFTTKSLFVGHTDYKYL 215 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~--~~-----------------------------v~~~~~tT~~~~~~~~~~~~~ 215 (275)
...+|+++|.+++|||||+++|+... +. .....++|.+.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 44689999999999999999997421 10 011246788888888888888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 216 RYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 216 ~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
.+.+|||||.. .+-......+... |++++|+|++++
T Consensus 86 ~i~iiDtpGh~--------~f~~~~~~~~~~a-D~~ilVvDa~~~ 121 (426)
T TIGR00483 86 EVTIVDCPGHR--------DFIKNMITGASQA-DAAVLVVAVGDG 121 (426)
T ss_pred EEEEEECCCHH--------HHHHHHHhhhhhC-CEEEEEEECCCC
Confidence 99999999932 1212223344444 999999999975
No 240
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.84 E-value=2.1e-08 Score=84.94 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=54.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||+.++....... .+..|..+.....+..++ ..+++|||||... +.......++.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~--------~~~l~~~~~~~ 74 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPK-EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE--------YDRLRTLSYPQ 74 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCc-CCCCceEeeeEEEEEECCEEEEEEEEECCCchh--------hhhhhhhhccC
Confidence 589999999999999999998765432 222222222222334444 3578999999532 22122233444
Q ss_pred ccceeEEEEeCCCCCC
Q 035873 247 LRSAVLFFLDISGSCG 262 (275)
Q Consensus 247 ~~d~il~viD~s~~~g 262 (275)
+|++++|+|.+++..
T Consensus 75 -a~~~ilvydit~~~S 89 (191)
T cd01875 75 -TNVFIICFSIASPSS 89 (191)
T ss_pred -CCEEEEEEECCCHHH
Confidence 499999999997644
No 241
>PRK10867 signal recognition particle protein; Provisional
Probab=98.83 E-value=8e-09 Score=98.08 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHh-------cCCcccccCC-Ccccc----------eEEEEEE-----------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT-------RADVDVQPYA-FTTKS----------LFVGHTD----------------- 211 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~-------~~~~~v~~~~-~tT~~----------~~~~~~~----------------- 211 (275)
.+..|+++|.+|+||||+..+|+ |.++.+.+.+ +.... .....+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35689999999999999887775 2334321111 11110 0000000
Q ss_pred --ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 212 --YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 212 --~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
..+.++.|+||||........+.++.. +.... .++.+++|+|++ .|+++.+|++.|.+
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~--i~~~v-~p~evllVlda~--~gq~av~~a~~F~~ 238 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKA--IKAAV-NPDEILLVVDAM--TGQDAVNTAKAFNE 238 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHH--HHHhh-CCCeEEEEEecc--cHHHHHHHHHHHHh
Confidence 012468999999987644333333322 11111 257889999997 78899999988864
No 242
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.83 E-value=3.3e-09 Score=95.15 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHh------cCCcccccCCCcccc-----------eEEEEEE------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT------RADVDVQPYAFTTKS-----------LFVGHTD------------------ 211 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~~~~tT~~-----------~~~~~~~------------------ 211 (275)
.+..|+++|.+|+||||++.+|+ |.++.+-..+..... .....+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999998886 233321111110000 0001000
Q ss_pred -ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHH---HHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 212 -YKYLRYQVIDTPGILDRPFEDHNIIEMCSITA---LAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 212 -~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~---l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
..+.++.++||||........+.++.+..... +...+|.+++|+|++ +|++...|..-|.+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~--~~~~~~~~~~~f~~ 215 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT--TGQNALEQAKVFNE 215 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--CCHHHHHHHHHHHh
Confidence 13457899999998875444444444321111 122368899999998 78877788776653
No 243
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.82 E-value=3.5e-08 Score=97.48 Aligned_cols=84 Identities=21% Similarity=0.214 Sum_probs=60.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc------c----------ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD------V----------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~------v----------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
..|+++|+.++|||||+++|....-. + ...-+.|.......+.|++..+.+|||||..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 37999999999999999999742110 1 11235676777778889999999999999643
Q ss_pred hhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 233 HNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 233 ~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
+......+++.+ |++++|+|+++..
T Consensus 77 ---F~~ev~~~l~~a-D~alLVVDa~~G~ 101 (594)
T TIGR01394 77 ---FGGEVERVLGMV-DGVLLLVDASEGP 101 (594)
T ss_pred ---HHHHHHHHHHhC-CEEEEEEeCCCCC
Confidence 111224456655 9999999998643
No 244
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.81 E-value=2.1e-08 Score=81.11 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=51.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
.+|++||..++|||||+++|.+....... |.... +.+ .+|||||-.= .+.+...++......+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K----Tq~i~-----~~~---~~IDTPGEyi-----E~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK----TQAIE-----YYD---NTIDTPGEYI-----ENPRFYHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc----cceeE-----ecc---cEEECChhhe-----eCHHHHHHHHHHHhhC
Confidence 37999999999999999999986653222 32222 211 4599999421 1333344555555666
Q ss_pred ceeEEEEeCCCCC
Q 035873 249 SAVLFFLDISGSC 261 (275)
Q Consensus 249 d~il~viD~s~~~ 261 (275)
|+|++|.|++++.
T Consensus 65 d~V~ll~dat~~~ 77 (143)
T PF10662_consen 65 DVVLLLQDATEPR 77 (143)
T ss_pred CEEEEEecCCCCC
Confidence 9999999999753
No 245
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.81 E-value=3.9e-08 Score=84.27 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=50.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc-----ccccCCCcccceEEEEEEec---------------------------C---
Q 035873 170 TILICWYPNVGKSSFMNKITRADV-----DVQPYAFTTKSLFVGHTDYK---------------------------Y--- 214 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~-----~v~~~~~tT~~~~~~~~~~~---------------------------~--- 214 (275)
.|+++|..++|||||+.+|++... +... +.|.......+.|. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELER--NITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEc--CCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 689999999999999999986521 1111 11111111111111 2
Q ss_pred ---eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 215 ---LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 215 ---~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
.++.+|||||. ..+.......+... |++++|+|++++
T Consensus 80 ~~~~~i~~iDtPG~--------~~~~~~~~~~~~~~-D~~llVvd~~~~ 119 (203)
T cd01888 80 KLVRHVSFVDCPGH--------EILMATMLSGAAVM-DGALLLIAANEP 119 (203)
T ss_pred ccccEEEEEECCCh--------HHHHHHHHHhhhcC-CEEEEEEECCCC
Confidence 67899999993 22333345555555 999999999964
No 246
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3e-08 Score=83.29 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=67.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
+..+++++|--+|||||||+++.-..+.-.-.++...+.....+.+.+. ++|+|||+|.. .+.-..-..+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE--------RFrslipsY~ 92 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI 92 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHH--------HHhhhhhhhc
Confidence 4468999999999999999999876665554455566666667777665 67999999943 2222223455
Q ss_pred HhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 245 AHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
+.. .+++.|+|.++. .+++.--++++
T Consensus 93 Rds-~vaviVyDit~~--~Sfe~t~kWi~ 118 (221)
T KOG0094|consen 93 RDS-SVAVIVYDITDR--NSFENTSKWIE 118 (221)
T ss_pred cCC-eEEEEEEecccc--chHHHHHHHHH
Confidence 555 899999999954 44554444444
No 247
>PRK10218 GTP-binding protein; Provisional
Probab=98.80 E-value=4e-08 Score=97.14 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=61.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc----------------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD----------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~----------------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
..+|+++|..++|||||+++|+..... .....+.|.......+.|++..+.+|||||..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 458999999999999999999853211 01123456666667778888999999999965421
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
. ....+++.+ |++++|+|+++..
T Consensus 83 --~----~v~~~l~~a-Dg~ILVVDa~~G~ 105 (607)
T PRK10218 83 --G----EVERVMSMV-DSVLLVVDAFDGP 105 (607)
T ss_pred --H----HHHHHHHhC-CEEEEEEecccCc
Confidence 1 223456665 9999999998653
No 248
>PLN03126 Elongation factor Tu; Provisional
Probab=98.80 E-value=4.6e-08 Score=94.24 Aligned_cols=97 Identities=15% Similarity=0.055 Sum_probs=66.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc----------------ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV----------------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~----------------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
...+|+++|.+++|||||+++|++... ......+.|.+.....+.+++.++.++||||..+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 345799999999999999999985211 1122245676666666777888999999999532
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
+-......+... |++++|+|+.+.......+.+.+.
T Consensus 157 -----f~~~~~~g~~~a-D~ailVVda~~G~~~qt~e~~~~~ 192 (478)
T PLN03126 157 -----YVKNMITGAAQM-DGAILVVSGADGPMPQTKEHILLA 192 (478)
T ss_pred -----HHHHHHHHHhhC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 222334555544 999999999965444344444443
No 249
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.80 E-value=3.4e-08 Score=93.15 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=64.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC-----c-----------ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD-----V-----------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~-----~-----------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
..+|+++|..++|||||+++|++.. . ......++|.+.....+..++.++.+|||||..+
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~---- 87 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD---- 87 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH----
Confidence 4579999999999999999998431 0 0112257788876666666677899999999532
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
+.......+... |++++|+|++++......+.+.++
T Consensus 88 ----f~~~~~~~~~~~-D~~ilVvda~~g~~~qt~e~l~~~ 123 (394)
T TIGR00485 88 ----YVKNMITGAAQM-DGAILVVSATDGPMPQTREHILLA 123 (394)
T ss_pred ----HHHHHHHHHhhC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 222223444444 999999999965433344444443
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.80 E-value=4.8e-08 Score=95.24 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=59.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc--CCc----ccc----------c------CCCcccceEEEEEEecCeeEEEEeCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR--ADV----DVQ----------P------YAFTTKSLFVGHTDYKYLRYQVIDTPG 224 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~--~~~----~v~----------~------~~~tT~~~~~~~~~~~~~~~~liDTpG 224 (275)
+..+|+++|.+|+|||||+++|.. ... .+. + .-+.|.......+.|++..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 345899999999999999999852 111 111 0 012333445566778889999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 225 ILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 225 ~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
..+ +......+++.+ |++|+|+|++....
T Consensus 90 ~~d--------f~~~~~~~l~~a-D~aIlVvDa~~gv~ 118 (527)
T TIGR00503 90 HED--------FSEDTYRTLTAV-DNCLMVIDAAKGVE 118 (527)
T ss_pred hhh--------HHHHHHHHHHhC-CEEEEEEECCCCCC
Confidence 742 112245566665 99999999986543
No 251
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.79 E-value=4.7e-08 Score=96.91 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=62.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEe-cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.|+++|.+++|||||+++|+|.+.. .....+.|.+.....+.. ++..+.+|||||.. .+.+.....+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe--------~fi~~m~~g~~ 73 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE--------KFLSNMLAGVG 73 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH--------HHHHHHHHHhh
Confidence 5899999999999999999986532 223346676665555544 45678999999952 22222334444
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.. |++++|+|++++......+-+.++
T Consensus 74 ~~-D~~lLVVda~eg~~~qT~ehl~il 99 (614)
T PRK10512 74 GI-DHALLVVACDDGVMAQTREHLAIL 99 (614)
T ss_pred cC-CEEEEEEECCCCCcHHHHHHHHHH
Confidence 44 999999999976544444444443
No 252
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.79 E-value=3.7e-08 Score=93.25 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=63.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCccc---------------------------------ccCCCcccceEEEEEEecCee
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDV---------------------------------QPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v---------------------------------~~~~~tT~~~~~~~~~~~~~~ 216 (275)
+|+++|.+++|||||+++|....-.+ ...-+.|.+.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 68999999999999999996322110 001234677777778888889
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
+.++||||.. .+-......+... |++|+|+|++++......+.+.+.
T Consensus 82 ~~liDtPGh~--------~f~~~~~~~~~~a-D~allVVda~~G~~~qt~~~~~~~ 128 (406)
T TIGR02034 82 FIVADTPGHE--------QYTRNMATGASTA-DLAVLLVDARKGVLEQTRRHSYIA 128 (406)
T ss_pred EEEEeCCCHH--------HHHHHHHHHHhhC-CEEEEEEECCCCCccccHHHHHHH
Confidence 9999999943 1222223455554 999999999876544444444443
No 253
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.79 E-value=5.5e-08 Score=79.99 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=52.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|||||||+.++...... ..++. +.+.....+.+++. .+++|||+|..+ . ..+ ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~-~~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~------~-------~~~-~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV-QLESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD------A-------QFA-SW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCCCC-CccceEEEEEECCEEEEEEEEECCCCCc------h-------hHH-hc
Confidence 6899999999999999998765432 22332 23333455666664 578999999742 0 112 33
Q ss_pred cceeEEEEeCCCCCC
Q 035873 248 RSAVLFFLDISGSCG 262 (275)
Q Consensus 248 ~d~il~viD~s~~~g 262 (275)
+|++++|+|.++...
T Consensus 66 ~~~~ilv~d~~~~~s 80 (158)
T cd04103 66 VDAVIFVFSLENEAS 80 (158)
T ss_pred CCEEEEEEECCCHHH
Confidence 599999999997543
No 254
>PRK12289 GTPase RsgA; Reviewed
Probab=98.78 E-value=9.7e-09 Score=95.22 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=42.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC-cccccCCC-------cccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRAD-VDVQPYAF-------TTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~-------tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
.++++|.||||||||||+|.+.. ..+++.++ ||++...-.+ .+ ...++||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~-g~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PN-GGLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CC-CcEEEeCCCcccccc
Confidence 57999999999999999999765 34555555 7877754433 21 238999999976554
No 255
>PRK13351 elongation factor G; Reviewed
Probab=98.77 E-value=4.5e-08 Score=98.58 Aligned_cols=95 Identities=20% Similarity=0.131 Sum_probs=65.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc---c---c------cc------CCCcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV---D---V------QP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~---~---v------~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
..+|+++|..|+|||||+++|..... . + .+ ..+.|.......+.|++..+.+|||||..+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d-- 85 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID-- 85 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH--
Confidence 45899999999999999999974211 0 1 10 123455666667888899999999999753
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
+......+++.+ |++++|+|+++.........+..
T Consensus 86 ------f~~~~~~~l~~a-D~~ilVvd~~~~~~~~~~~~~~~ 120 (687)
T PRK13351 86 ------FTGEVERSLRVL-DGAVVVFDAVTGVQPQTETVWRQ 120 (687)
T ss_pred ------HHHHHHHHHHhC-CEEEEEEeCCCCCCHHHHHHHHH
Confidence 222335566666 99999999997655444444443
No 256
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.77 E-value=1.6e-08 Score=94.35 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=66.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHh------cCCccccc--------------------CCCcccceEEEEE----------
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT------RADVDVQP--------------------YAFTTKSLFVGHT---------- 210 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~--------------------~~~tT~~~~~~~~---------- 210 (275)
.+.+|+++|.-|+||||...+|+ +.++.+.. .||...+.....+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999987 33333211 1121111000000
Q ss_pred EecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 211 DYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 211 ~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
..++.++.|+||+|.++-..+.++++.. +.... .||=+|||+|+. .|+.+..|.+-|+|
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~--Ik~~~-~P~E~llVvDam--~GQdA~~~A~aF~e 237 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKE--IKEVI-NPDETLLVVDAM--IGQDAVNTAKAFNE 237 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHH--HHhhc-CCCeEEEEEecc--cchHHHHHHHHHhh
Confidence 0112489999999988765444444321 22211 158899999999 99999999999986
No 257
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.77 E-value=5e-08 Score=94.06 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCccccc-----------C----------------------CCcccceEEEEEEec
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQP-----------Y----------------------AFTTKSLFVGHTDYK 213 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~-----------~----------------------~~tT~~~~~~~~~~~ 213 (275)
...+|+++|.+++|||||+++|....-.+.. . -+.|.+.....+.++
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 4468999999999999999999743211100 0 123556666667777
Q ss_pred CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 214 YLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 214 ~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
+.++.++||||.. .+.......+.. +|++++|+|++++..
T Consensus 106 ~~~i~~iDTPGh~--------~f~~~~~~~l~~-aD~allVVDa~~G~~ 145 (474)
T PRK05124 106 KRKFIIADTPGHE--------QYTRNMATGAST-CDLAILLIDARKGVL 145 (474)
T ss_pred CcEEEEEECCCcH--------HHHHHHHHHHhh-CCEEEEEEECCCCcc
Confidence 8899999999932 122222344544 499999999986543
No 258
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.76 E-value=4.9e-08 Score=83.72 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=49.2
Q ss_pred eccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcccee
Q 035873 174 CWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAV 251 (275)
Q Consensus 174 vG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~i 251 (275)
+|.+|||||||++++..........|+...+.....+.+++ ..+.+|||||... +.......++.. |++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~--------~~~l~~~~~~~a-d~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK--------FGGLRDGYYIQG-QCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh--------hhhhhHHHhcCC-CEE
Confidence 69999999999999986554322222211222223333333 4789999999532 222223345554 999
Q ss_pred EEEEeCCCCC
Q 035873 252 LFFLDISGSC 261 (275)
Q Consensus 252 l~viD~s~~~ 261 (275)
++|+|+++..
T Consensus 72 ilV~D~t~~~ 81 (200)
T smart00176 72 IIMFDVTARV 81 (200)
T ss_pred EEEEECCChH
Confidence 9999999653
No 259
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.76 E-value=8.5e-08 Score=93.52 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=58.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc--CCc-c---c----------ccC------CCcccceEEEEEEecCeeEEEEeCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR--ADV-D---V----------QPY------AFTTKSLFVGHTDYKYLRYQVIDTPG 224 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~--~~~-~---v----------~~~------~~tT~~~~~~~~~~~~~~~~liDTpG 224 (275)
...+|+++|.+|+|||||+++|+. ... . + .++ -+.|.......+.|++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 345899999999999999999962 111 1 1 100 12233344456778888999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 225 ILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 225 ~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
..+.. .....+++.+ |++++|+|+++...
T Consensus 89 ~~df~--------~~~~~~l~~a-D~aIlVvDa~~gv~ 117 (526)
T PRK00741 89 HEDFS--------EDTYRTLTAV-DSALMVIDAAKGVE 117 (526)
T ss_pred chhhH--------HHHHHHHHHC-CEEEEEEecCCCCC
Confidence 65321 1234566655 99999999997543
No 260
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.76 E-value=3.6e-08 Score=79.29 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=64.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+|-||||||+|+-++......-+-..++..+.....+..+|. .++||||+|. ..+... ...+-+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq--------ErFrti-tstyyr 79 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ--------ERFRTI-TSTYYR 79 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH--------HHHHHH-HHHHcc
Confidence 35688999999999999998866444333333445566666777765 5699999993 222222 234444
Q ss_pred ccceeEEEEeCCCCCCCCHHHHHHHHhcC
Q 035873 247 LRSAVLFFLDISGSCGYSIAQQAALFHSI 275 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~q~~l~~ei 275 (275)
.++++++|.|.+ -|.+...--++|+||
T Consensus 80 gthgv~vVYDVT--n~ESF~Nv~rWLeei 106 (198)
T KOG0079|consen 80 GTHGVIVVYDVT--NGESFNNVKRWLEEI 106 (198)
T ss_pred CCceEEEEEECc--chhhhHhHHHHHHHH
Confidence 569999999999 456666666666653
No 261
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.75 E-value=3.1e-08 Score=87.58 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=43.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc-ccc-------cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 170 TILICWYPNVGKSSFMNKITRADV-DVQ-------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~-~v~-------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
.++++|.+|||||||+|+|.+... .++ ...+||++...-.+ . ...++||||+.......
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNEFGLWH 188 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCccccCCCC
Confidence 789999999999999999997642 222 24458877765554 2 34899999998765543
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.75 E-value=1.1e-08 Score=97.27 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHh------cCCcccccCCCccc-------------c-eEEEEE--------------Ee
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT------RADVDVQPYAFTTK-------------S-LFVGHT--------------DY 212 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~~~~tT~-------------~-~~~~~~--------------~~ 212 (275)
.+..|+++|.+|+||||++.+|. |.++.+...+.... + +..+.. ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46789999999999999998886 22332111111000 0 000000 00
Q ss_pred cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 213 KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 213 ~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.+.++.|+||||........+.++. .+..+.. +|.+++|+|++ .|+++.+|++-|.+
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~--~l~~~~~-pdevlLVvda~--~gq~av~~a~~F~~ 230 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMK--EIKEAVK-PDEVLLVIDAT--IGQQAKNQAKAFHE 230 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHH--HHHHHhc-ccceeEEEecc--ccHHHHHHHHHHHh
Confidence 1247899999998865433333332 2233332 58899999998 57888888887764
No 263
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.74 E-value=9.4e-08 Score=82.31 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe----cCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY----KYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
...+|+++|.+|||||||++++.......... +|.+.......+ +...+.+|||||... .......
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~--------~~~~~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYI--PTLGVEVHPLKFYTNCGPICFNVWDTAGQEK--------FGGLRDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceEEEEEEEEECCeEEEEEEEECCCchh--------hhhhhHH
Confidence 34689999999999999998765443321111 233333333222 234778999999532 1111122
Q ss_pred HHHhccceeEEEEeCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~ 261 (275)
.+.. .+++++|+|.++..
T Consensus 78 ~~~~-~~~~i~v~d~~~~~ 95 (215)
T PTZ00132 78 YYIK-GQCAIIMFDVTSRI 95 (215)
T ss_pred Hhcc-CCEEEEEEECcCHH
Confidence 3334 48999999998654
No 264
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=7.7e-08 Score=81.71 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|-+|||||+++-++...........+...+.....+..++. .+|+|||+|.. +....+..++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe--------rf~ti~~sYy 82 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQE--------RFRTITTAYY 82 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccch--------hHHHHHHHHH
Confidence 5678999999999999999999876665544433445555556666665 56999999943 3333444555
Q ss_pred HhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
+.+ +.+++|+|.+.. .+.+.-..+++.
T Consensus 83 rgA-~gi~LvyDitne--~Sfeni~~W~~~ 109 (207)
T KOG0078|consen 83 RGA-MGILLVYDITNE--KSFENIRNWIKN 109 (207)
T ss_pred hhc-CeeEEEEEccch--HHHHHHHHHHHH
Confidence 554 999999999954 445544445443
No 265
>PRK12288 GTPase RsgA; Reviewed
Probab=98.74 E-value=1.9e-08 Score=93.23 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=41.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc-ccccCC-------CcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADV-DVQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~-~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
.++++|.||||||||||+|.+... .+++.+ +||.......+.. ...|+||||+-.-...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~---~~~liDTPGir~~~l~ 273 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH---GGDLIDSPGVREFGLW 273 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC---CCEEEECCCCCcccCC
Confidence 579999999999999999997653 344433 3666655444421 2369999999775543
No 266
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.73 E-value=6.4e-08 Score=84.46 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=57.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc--cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~--v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
..+..|+++|.+|+|||||+|.|.+.... +....++ . -.....+.++.++||||.+ ...+..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~-----------~~~l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI-----------NAMIDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH-----------HHHHHH
Confidence 34567999999999999999999865221 2222221 1 1122356789999999843 111233
Q ss_pred HHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 244 LAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 244 l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
+ +.+|++++|+|++.+........++.+
T Consensus 101 a-k~aDvVllviDa~~~~~~~~~~i~~~l 128 (225)
T cd01882 101 A-KVADLVLLLIDASFGFEMETFEFLNIL 128 (225)
T ss_pred H-HhcCEEEEEEecCcCCCHHHHHHHHHH
Confidence 3 345999999999866554444444444
No 267
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.73 E-value=9.2e-08 Score=94.59 Aligned_cols=84 Identities=23% Similarity=0.195 Sum_probs=56.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc---------ccc------CCCcccceEEEEEEec---C--eeEEEEeCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD---------VQP------YAFTTKSLFVGHTDYK---Y--LRYQVIDTPGILDR 228 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~---------v~~------~~~tT~~~~~~~~~~~---~--~~~~liDTpG~~~~ 228 (275)
..|+++|.+++|||||+++|...... ..+ ..+.|.......+.|. + ..+.+|||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999999754211 111 1244555544555553 2 46899999997641
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
......+++.+ |++++|+|+++..
T Consensus 84 --------~~~v~~~l~~a-D~aILVvDat~g~ 107 (595)
T TIGR01393 84 --------SYEVSRSLAAC-EGALLLVDAAQGI 107 (595)
T ss_pred --------HHHHHHHHHhC-CEEEEEecCCCCC
Confidence 11223456665 9999999999653
No 268
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.9e-08 Score=83.14 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+++++|..|||||||+-++...+..-...|++........+...+ ..+.+|||+|...-. -.+--.+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~--------slapMYy 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH--------SLAPMYY 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccc--------cccccee
Confidence 345899999999999999999876665443445555666666666666 467899999976411 1122234
Q ss_pred HhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 245 AHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
+.. +++|+|+|.++. .++..--++++
T Consensus 76 RgA-~AAivvYDit~~--~SF~~aK~Wvk 101 (200)
T KOG0092|consen 76 RGA-NAAIVVYDITDE--ESFEKAKNWVK 101 (200)
T ss_pred cCC-cEEEEEEecccH--HHHHHHHHHHH
Confidence 554 899999999954 34444444443
No 269
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.72 E-value=7.7e-08 Score=78.47 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=59.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|++||..|||||||+-+++...+......+...+.....+.+++. ++-+|||+|.. .+.-.+-..++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE--------rFRtLTpSyyR 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE--------RFRTLTPSYYR 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchH--------hhhccCHhHhc
Confidence 468999999999999999999877665333222345566666777766 46889999953 22223334555
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. -.||+|.|.+..
T Consensus 83 ga-qGiIlVYDVT~R 96 (209)
T KOG0080|consen 83 GA-QGIILVYDVTSR 96 (209)
T ss_pred cC-ceeEEEEEccch
Confidence 54 789999999854
No 270
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.69 E-value=2.3e-08 Score=82.62 Aligned_cols=60 Identities=23% Similarity=0.129 Sum_probs=36.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-c---c----ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-D---V----QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-~---v----~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
.+++++|.+|||||||+|.|.+... . + ...-+||.......+ .....+|||||+-+-...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCccccc
Confidence 4899999999999999999997632 1 2 233456665544333 235689999998665444
No 271
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.69 E-value=8.7e-08 Score=76.58 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=64.5
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecC-eeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
.+..+|+++|..|+||||++..|.+.++. +.+ |.+.+...+.+.+ .++.+||..|.-.- +. ..-+.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~I----Rp----yWsNY 82 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRGI----RP----YWSNY 82 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCcccc----ch----hhhhh
Confidence 45678999999999999999999998876 444 6677777788776 79999999994321 11 22456
Q ss_pred HHhccceeEEEEeCCCCCC
Q 035873 244 LAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 244 l~~~~d~il~viD~s~~~g 262 (275)
+++. |.++||||+++...
T Consensus 83 yenv-d~lIyVIDS~D~kr 100 (185)
T KOG0074|consen 83 YENV-DGLIYVIDSTDEKR 100 (185)
T ss_pred hhcc-ceEEEEEeCCchHh
Confidence 6666 99999999876543
No 272
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.68 E-value=1.9e-08 Score=84.75 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=46.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCC-cccceEEEEEEe---cCeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAF-TTKSLFVGHTDY---KYLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~-tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
.+.|+++|+.|+|||+|+..|...... ++ |....... ..+ .+..+.+||+||... .+..+. .....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~r----lr~~~~-~~~~~ 72 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPR----LRSKLL-DELKY 72 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEE-CCGSSTCGTCECEEEETT-HC----CCHHHH-HHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCce-EEeecCCCCEEEEEECCCcHH----HHHHHH-Hhhhc
Confidence 357999999999999999999876321 11 12222222 222 356899999999542 222221 11122
Q ss_pred HHhccceeEEEEeCC
Q 035873 244 LAHLRSAVLFFLDIS 258 (275)
Q Consensus 244 l~~~~d~il~viD~s 258 (275)
+..+ .+|+||+|++
T Consensus 73 ~~~~-k~IIfvvDSs 86 (181)
T PF09439_consen 73 LSNA-KGIIFVVDSS 86 (181)
T ss_dssp HGGE-EEEEEEEETT
T ss_pred hhhC-CEEEEEEeCc
Confidence 4443 7899999997
No 273
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=4.2e-08 Score=90.16 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=67.0
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHh------cCCcc-cccCCC-------------cccceEEEEEE-------------
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKIT------RADVD-VQPYAF-------------TTKSLFVGHTD------------- 211 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~------~~~~~-v~~~~~-------------tT~~~~~~~~~------------- 211 (275)
...+..|++||..|+||||.+.+|+ |.++. ++.-.| -++-+..+.++
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 3466789999999999999999987 33332 211100 11222223221
Q ss_pred ---ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 212 ---YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 212 ---~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
-++.++.|+||.|......+...++ ++...++ .||-||||+|+| .|++++.|.+-|++
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM-~~v~~ai--~Pd~vi~VmDas--iGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEM-KQVSKAI--KPDEIIFVMDAS--IGQAAEAQARAFKE 238 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHH-HHHHhhc--CCCeEEEEEecc--ccHhHHHHHHHHHH
Confidence 1235789999999876443332222 1111222 269999999999 99999999999986
No 274
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.3e-07 Score=78.84 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=62.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEE--EEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFV--GHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~--~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
...++.++|-.|||||+|+-+++.+....-.- .|.+... ..+.+++. ++++|||+|.. ...-.+..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~~id~k~IKlqiwDtaGqe--------~frsv~~s 74 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMVTIDGKQIKLQIWDTAGQE--------SFRSVTRS 74 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEEEEcCceEEEEEEecCCcH--------HHHHHHHH
Confidence 34578999999999999999999776542221 3444433 34455554 67999999943 22333456
Q ss_pred HHHhccceeEEEEeCCCCCCCCHHHHH
Q 035873 243 ALAHLRSAVLFFLDISGSCGYSIAQQA 269 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~g~~~~~q~ 269 (275)
.++.. ..+|+|.|.+.....+..+||
T Consensus 75 yYr~a-~GalLVydit~r~sF~hL~~w 100 (216)
T KOG0098|consen 75 YYRGA-AGALLVYDITRRESFNHLTSW 100 (216)
T ss_pred HhccC-cceEEEEEccchhhHHHHHHH
Confidence 66665 778999999966555555554
No 275
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.67 E-value=1.3e-07 Score=89.51 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=55.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCccc---ccCCCcccceEEEE--------------------------EEecCeeEE
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDV---QPYAFTTKSLFVGH--------------------------TDYKYLRYQ 218 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v---~~~~~tT~~~~~~~--------------------------~~~~~~~~~ 218 (275)
..+|+++|.+++|||||+++|++..... .-.-+.|.+..... ....+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 3579999999999999999998643210 00001111111000 001135789
Q ss_pred EEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC-CCCHHHHHHHH
Q 035873 219 VIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC-GYSIAQQAALF 272 (275)
Q Consensus 219 liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~-g~~~~~q~~l~ 272 (275)
+|||||.. .+......... .+|++++|+|++++. .....+.+.++
T Consensus 84 liDtPGh~--------~f~~~~~~g~~-~aD~aIlVVDa~~g~~~~qt~e~l~~l 129 (406)
T TIGR03680 84 FVDAPGHE--------TLMATMLSGAA-LMDGALLVIAANEPCPQPQTKEHLMAL 129 (406)
T ss_pred EEECCCHH--------HHHHHHHHHHH-HCCEEEEEEECCCCccccchHHHHHHH
Confidence 99999942 22222233434 349999999999765 33344444443
No 276
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=6.5e-08 Score=90.89 Aligned_cols=197 Identities=17% Similarity=0.191 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhhhCCCC--CCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhhHHHHH
Q 035873 56 QNFFEKLSTIIDEFPRL--DDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKSLEVAA 133 (275)
Q Consensus 56 ~~~~~~l~~i~~~fp~i--~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~~~~~~ 133 (275)
.....-|..++.+ ..+ .|+.|..+-+-+-|+.++. |....+.+.+.....+- |..+.....+...+
T Consensus 278 g~aFg~fkglvG~-K~L~eeDL~pvL~kM~ehLitKNV----------A~eiA~~LcEsV~a~Le-gkkv~sfs~V~~Tv 345 (587)
T KOG0781|consen 278 GGAFGLFKGLVGS-KSLSEEDLNPVLDKMTEHLITKNV----------AAEIAEKLCESVAASLE-GKKVGSFSTVESTV 345 (587)
T ss_pred hhHHHHHHhhccc-ccccHhhhHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHhh-hcccccchHHHHHH
Confidence 3445556664433 444 5555555555555555554 44455555554444332 12222222223333
Q ss_pred hhhHHHHHHhh---CchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHh----cC--CcccccCCCcccc
Q 035873 134 LGRMCTVVKRI---GPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKIT----RA--DVDVQPYAFTTKS 204 (275)
Q Consensus 134 ~~r~~~~~~~~---~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~----~~--~~~v~~~~~tT~~ 204 (275)
..-+...+-++ ..+++.|+.+....++ .++.+|++||.+||||||-+.+|+ .. .+.++.+.++..+
T Consensus 346 k~Al~daLvQILTP~~sVDlLRdI~sar~~-----krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsG 420 (587)
T KOG0781|consen 346 KEALRDALVQILTPQRSVDLLRDIMSARRR-----KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSG 420 (587)
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhc-----CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhh
Confidence 33333333332 2345556555543222 367899999999999999999987 22 2345555544433
Q ss_pred eEEEE-----------------EE-------------------ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 205 LFVGH-----------------TD-------------------YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 205 ~~~~~-----------------~~-------------------~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
...+. ++ -++.++.++||+|..++..+.|..+.+.. -..-+
T Consensus 421 AvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~---~~~~p 497 (587)
T KOG0781|consen 421 AVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLI---KVNKP 497 (587)
T ss_pred HHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHH---hcCCC
Confidence 32110 00 11268999999999988877776665431 12236
Q ss_pred ceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 249 SAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 249 d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
|.||||=-|- .|....+|++-|++
T Consensus 498 d~i~~vgeal--vg~dsv~q~~~fn~ 521 (587)
T KOG0781|consen 498 DLILFVGEAL--VGNDSVDQLKKFNR 521 (587)
T ss_pred ceEEEehhhh--hCcHHHHHHHHHHH
Confidence 9999997776 78889999998874
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.67 E-value=5.3e-08 Score=92.44 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=36.9
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.++.|+||||........+.++.. +.... .+|.+++|+|++ .|++..+|++.|.+
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~--i~~~~-~p~e~lLVvda~--tgq~~~~~a~~f~~ 237 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAA--IKEIL-NPDEILLVVDAM--TGQDAVNTAKTFNE 237 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHH--HHHhh-CCceEEEEEecc--chHHHHHHHHHHHh
Confidence 468999999987643333333322 11111 258899999997 78889989888763
No 278
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.66 E-value=1.5e-07 Score=80.78 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=52.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec---CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.+|+++|.+|||||||+++|.+..+.....|+.+ ........+. ..++++|||+|.. ++... ....-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~~Dt~gq~--------~~~~~-~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG-NLDPAKTIEPYRRNIKLQLWDTAGQE--------EYRSL-RPEYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee-eeeEEEEEEeCCCEEEEEeecCCCHH--------HHHHH-HHHHh
Confidence 5899999999999999999997776543333222 1222222222 3468999999954 22222 22222
Q ss_pred hccceeEEEEeCCC
Q 035873 246 HLRSAVLFFLDISG 259 (275)
Q Consensus 246 ~~~d~il~viD~s~ 259 (275)
..++++++|+|.+.
T Consensus 76 ~~~~~~l~~~d~~~ 89 (219)
T COG1100 76 RGANGILIVYDSTL 89 (219)
T ss_pred cCCCEEEEEEeccc
Confidence 33489999999885
No 279
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.66 E-value=4.2e-08 Score=81.63 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|.+.|-+|||||||+|.+...+.......+...+.....+.+++. .+|+|||+|... ...+....+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQER--------FqsLg~aFY 79 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQER--------FQSLGVAFY 79 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHH--------hhhccccee
Confidence 4568999999999999999999987766444444444444455555554 569999999542 222233444
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
+-. |+.++|.|....-
T Consensus 80 Rga-DcCvlvydv~~~~ 95 (210)
T KOG0394|consen 80 RGA-DCCVLVYDVNNPK 95 (210)
T ss_pred cCC-ceEEEEeecCChh
Confidence 544 9999999987543
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.65 E-value=1.2e-07 Score=95.86 Aligned_cols=95 Identities=14% Similarity=0.009 Sum_probs=61.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc----------ccccC------CCcccceEEE----EEEecCeeEEEEeCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV----------DVQPY------AFTTKSLFVG----HTDYKYLRYQVIDTPGIL 226 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~----------~v~~~------~~tT~~~~~~----~~~~~~~~~~liDTpG~~ 226 (275)
...+|+++|..++|||||+++|..... ...++ .+.|...... .+.|++.++.+|||||..
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 346899999999999999999863210 00111 2234433222 245567789999999987
Q ss_pred CCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 227 DRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
+.. .....+++.+ |++|+|+|+.+......+..++
T Consensus 98 ~f~--------~~~~~al~~a-D~~llVvda~~g~~~~t~~~~~ 132 (720)
T TIGR00490 98 DFG--------GDVTRAMRAV-DGAIVVVCAVEGVMPQTETVLR 132 (720)
T ss_pred ccH--------HHHHHHHHhc-CEEEEEEecCCCCCccHHHHHH
Confidence 521 2235667776 9999999998755444444443
No 281
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.64 E-value=1.7e-07 Score=78.95 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=52.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|+++|.+|+|||||++++....... .+..|+.......+.+++. .+.+|||||....... . ...+.+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--~------~~~~~~a 73 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL--R------PLSYSKA 73 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc--c------hhhcCCC
Confidence 78999999999999999998554432 2222333333444555554 4689999996432110 1 1123444
Q ss_pred cceeEEEEeCCCC
Q 035873 248 RSAVLFFLDISGS 260 (275)
Q Consensus 248 ~d~il~viD~s~~ 260 (275)
|++++|+|.+..
T Consensus 74 -~~~llv~~i~~~ 85 (187)
T cd04129 74 -HVILIGFAVDTP 85 (187)
T ss_pred -CEEEEEEECCCH
Confidence 899999999754
No 282
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.64 E-value=2.7e-07 Score=91.38 Aligned_cols=86 Identities=23% Similarity=0.209 Sum_probs=57.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc---------c------ccCCCcccceEEEEEEec-----CeeEEEEeCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD---------V------QPYAFTTKSLFVGHTDYK-----YLRYQVIDTPGILD 227 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~---------v------~~~~~tT~~~~~~~~~~~-----~~~~~liDTpG~~~ 227 (275)
...++++|..++|||||+.+|...... + ...-+.|.......+.|. +..+.+|||||..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 458999999999999999999743211 1 111244555545555564 35789999999764
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
.. . ....+++.+ |++|+|+|++++..
T Consensus 87 F~----~----~v~~sl~~a-D~aILVVDas~gv~ 112 (600)
T PRK05433 87 FS----Y----EVSRSLAAC-EGALLVVDASQGVE 112 (600)
T ss_pred HH----H----HHHHHHHHC-CEEEEEEECCCCCC
Confidence 21 1 123456655 99999999996543
No 283
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.64 E-value=1.4e-07 Score=88.23 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=64.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC----Ccc------------cccCCC---cccceEE---EEEEec-C----eeEEE
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA----DVD------------VQPYAF---TTKSLFV---GHTDYK-Y----LRYQV 219 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~----~~~------------v~~~~~---tT~~~~~---~~~~~~-~----~~~~l 219 (275)
+...|+++|+.|+|||||||++++. +.. +++.++ ||.++.. ..++.. . ..+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5568999999999999999999987 332 567788 8888876 444432 2 47899
Q ss_pred EeCCCCCCCCCCchhHHHH---------------------HHHHHHH-hccceeEEEE-eCC
Q 035873 220 IDTPGILDRPFEDHNIIEM---------------------CSITALA-HLRSAVLFFL-DIS 258 (275)
Q Consensus 220 iDTpG~~~~~~~~~~~~e~---------------------~~~~~l~-~~~d~il~vi-D~s 258 (275)
+||+|+.+...-...+.++ =+...+. |. |..|+|. |+|
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhs-tIgivVtTDgs 156 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHS-TIGVVVTTDGT 156 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcC-cEEEEEEcCCC
Confidence 9999998753221111111 1556777 55 8888888 987
No 284
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.1e-08 Score=82.40 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=63.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|..|+||||++.+|.-.++... .| |.+.++..+.+.+.++++||.-|... .|..+ ......
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~ykn~~f~vWDvGGq~k----~R~lW----~~Y~~~ 84 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEYKNISFTVWDVGGQEK----LRPLW----KHYFQN 84 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CC--ccccceeEEEEcceEEEEEecCCCcc----cccch----hhhccC
Confidence 456899999999999999999975554322 44 88899999999999999999999742 22222 233444
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. ++++||+|+++..
T Consensus 85 t-~~lIfVvDS~Dr~ 98 (181)
T KOG0070|consen 85 T-QGLIFVVDSSDRE 98 (181)
T ss_pred C-cEEEEEEeCCcHH
Confidence 4 9999999999754
No 285
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.62 E-value=2.7e-07 Score=80.54 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=55.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccc--------------------------cCCCcc------------cceEEEEEE
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQ--------------------------PYAFTT------------KSLFVGHTD 211 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~--------------------------~~~~tT------------~~~~~~~~~ 211 (275)
+|+++|..++|||||+++++......+ ...|+. .......+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 478999999999999999984322100 000110 000012233
Q ss_pred ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH-hccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 212 YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA-HLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 212 ~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~-~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
..+..+.++||||.. .+.+.....+. ..+|++++|+|++.+......+-+.++
T Consensus 81 ~~~~~i~liDtpG~~--------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l 134 (224)
T cd04165 81 KSSKLVTFIDLAGHE--------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLA 134 (224)
T ss_pred eCCcEEEEEECCCcH--------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHH
Confidence 456789999999953 12223344444 346999999999866544333434433
No 286
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.61 E-value=3.7e-08 Score=79.14 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=61.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
..+.++|.-|+||||++|.++.....-.- ..|.+.+...++-++..+.+||.||... .+..+| ..++..
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edm--iptvGfnmrk~tkgnvtiklwD~gGq~r----frsmWe----rycR~v- 89 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPR----FRSMWE----RYCRGV- 89 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhh--cccccceeEEeccCceEEEEEecCCCcc----HHHHHH----HHhhcC-
Confidence 36899999999999999998754433111 2377788888888888999999999643 233333 345555
Q ss_pred ceeEEEEeCCCCC
Q 035873 249 SAVLFFLDISGSC 261 (275)
Q Consensus 249 d~il~viD~s~~~ 261 (275)
++|+||+|++++-
T Consensus 90 ~aivY~VDaad~~ 102 (186)
T KOG0075|consen 90 SAIVYVVDAADPD 102 (186)
T ss_pred cEEEEEeecCCcc
Confidence 9999999999854
No 287
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=1.3e-07 Score=94.99 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=55.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC--------cccccCCCcccce---------EEE-EE--------------EecCe
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD--------VDVQPYAFTTKSL---------FVG-HT--------------DYKYL 215 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~--------~~v~~~~~tT~~~---------~~~-~~--------------~~~~~ 215 (275)
...++++|++||||||++.+|.+.. +.+...++...+. ..+ .+ ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4589999999999999999998432 2111111000000 000 00 11235
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCC-CHHHHHHHHh
Q 035873 216 RYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGY-SIAQQAALFH 273 (275)
Q Consensus 216 ~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~-~~~~q~~l~~ 273 (275)
++.||||||...+..+.+.++.+. .-...++-+++|+|++ ++. .+.+.++-|+
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l---~~~~~p~e~~LVLsAt--~~~~~l~~i~~~f~ 318 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAML---CGVGRPVRRLLLLNAA--SHGDTLNEVVHAYR 318 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHH---hccCCCCeEEEEECCC--CcHHHHHHHHHHHh
Confidence 789999999876543322222111 1012246699999998 333 3444555554
No 288
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.58 E-value=4.6e-07 Score=86.82 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=60.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC--cc-----------------------------cccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD--VD-----------------------------VQPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~--~~-----------------------------v~~~~~tT~~~~~~~~~~~~~~ 216 (275)
..+|+++|..++|||||+.+|+..- +. .....+.|.+.....+.+++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 3579999999999999999986310 00 0112356777777778888889
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
+.++||||.. .+-......+.. +|++++|+|++++.
T Consensus 87 i~lIDtPGh~--------~f~~~~~~g~~~-aD~ailVVda~~G~ 122 (446)
T PTZ00141 87 FTIIDAPGHR--------DFIKNMITGTSQ-ADVAILVVASTAGE 122 (446)
T ss_pred EEEEECCChH--------HHHHHHHHhhhh-cCEEEEEEEcCCCc
Confidence 9999999943 222233444554 49999999999654
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=98.56 E-value=3.4e-07 Score=93.96 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=61.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCccc-ccC---------------CCcccceEEEEEEec----------CeeEEEE
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDV-QPY---------------AFTTKSLFVGHTDYK----------YLRYQVI 220 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v-~~~---------------~~tT~~~~~~~~~~~----------~~~~~li 220 (275)
...+|+++|..++|||||+++|......+ ... -+.|.......+.|. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34589999999999999999998532211 011 122333323334454 4568999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 221 DTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
||||..+ +......+++.+ |++++|+|++++.....+.-++.
T Consensus 98 DtPG~~~--------f~~~~~~al~~~-D~ailVvda~~g~~~~t~~~~~~ 139 (836)
T PTZ00416 98 DSPGHVD--------FSSEVTAALRVT-DGALVVVDCVEGVCVQTETVLRQ 139 (836)
T ss_pred cCCCHHh--------HHHHHHHHHhcC-CeEEEEEECCCCcCccHHHHHHH
Confidence 9999764 222235666665 99999999998765554444443
No 290
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=2.3e-07 Score=78.86 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=68.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSI-TA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~-~~ 243 (275)
..++|+++|-++||||-|+.+++.........++....+....+.+++. ..|+|||+|... + +++ .+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQER--------y--rAitSa 82 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQER--------Y--RAITSA 82 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhh--------h--ccccch
Confidence 4578999999999999999999988877777665555666666666665 459999999542 1 222 44
Q ss_pred HHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 244 l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
+-+.+-+.|+|.|.+.. .+.+.--++|+|
T Consensus 83 YYrgAvGAllVYDITr~--~Tfenv~rWL~E 111 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRR--QTFENVERWLKE 111 (222)
T ss_pred hhcccceeEEEEechhH--HHHHHHHHHHHH
Confidence 44555789999999854 344444445544
No 291
>PRK00098 GTPase RsgA; Reviewed
Probab=98.53 E-value=3.2e-07 Score=83.39 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=40.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-ccccCC-------CcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-DVQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
..++++|.+|||||||+|+|.+... .++..+ .||+......+. ....++||||+..-.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~---~~~~~~DtpG~~~~~ 230 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP---GGGLLIDTPGFSSFG 230 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC---CCcEEEECCCcCccC
Confidence 3789999999999999999997653 233332 366655443332 234899999997533
No 292
>PRK12740 elongation factor G; Reviewed
Probab=98.53 E-value=5.6e-07 Score=90.43 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=56.7
Q ss_pred eccCCCCHHHHHHHHh---cCCccc---------------ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhH
Q 035873 174 CWYPNVGKSSFMNKIT---RADVDV---------------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNI 235 (275)
Q Consensus 174 vG~~nvGKStlin~l~---~~~~~v---------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ 235 (275)
+|.+|+|||||+++|. |.-... ....+.|.......+.|++.++.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 6999999999999994 321111 11245567777788889999999999999652
Q ss_pred HHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 236 IEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 236 ~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
+......++... |++++|+|++...
T Consensus 73 ~~~~~~~~l~~a-D~vllvvd~~~~~ 97 (668)
T PRK12740 73 FTGEVERALRVL-DGAVVVVCAVGGV 97 (668)
T ss_pred HHHHHHHHHHHh-CeEEEEEeCCCCc
Confidence 122334566665 9999999999654
No 293
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3.7e-07 Score=73.91 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=58.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+++++|..|.|||.|+..+...+..-..-.+...+.-...+.+++. ++|+|||+|. ..+.-.+...++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ--------ErFRSVtRsYYR 80 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ--------ERFRSVTRSYYR 80 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH--------HHHHHHHHHHhc
Confidence 457999999999999999999876655332222223333334444444 6799999994 334444556666
Q ss_pred hccceeEEEEeCCCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCGYS 264 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~ 264 (275)
.. ...++|.|++....++
T Consensus 81 GA-AGAlLVYD~Tsrdsfn 98 (214)
T KOG0086|consen 81 GA-AGALLVYDITSRDSFN 98 (214)
T ss_pred cc-cceEEEEeccchhhHH
Confidence 65 6678899999654443
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.51 E-value=2.6e-07 Score=80.98 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccceEEEEEEe-cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
+|++.|..++||||..+.+.+.. +.-..+.+.|.+....++.. ++..+.+||.||....-.+ ....+....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~---~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN---YFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT---THTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc---cccccHHHHHhcc
Confidence 58999999999999999998664 44445556677777777764 4569999999998754322 1111223456666
Q ss_pred cceeEEEEeCCC
Q 035873 248 RSAVLFFLDISG 259 (275)
Q Consensus 248 ~d~il~viD~s~ 259 (275)
++++||+|+..
T Consensus 78 -~~LIyV~D~qs 88 (232)
T PF04670_consen 78 -GVLIYVFDAQS 88 (232)
T ss_dssp -SEEEEEEETT-
T ss_pred -CEEEEEEEccc
Confidence 89999999983
No 295
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.50 E-value=2.6e-08 Score=85.23 Aligned_cols=100 Identities=20% Similarity=0.112 Sum_probs=55.6
Q ss_pred ceeEeeccCCCCHHHHHHHHh------cCCcccccCCCcccce-----------EEEEE-------------------Ee
Q 035873 169 RTILICWYPNVGKSSFMNKIT------RADVDVQPYAFTTKSL-----------FVGHT-------------------DY 212 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~------~~~~~v~~~~~tT~~~-----------~~~~~-------------------~~ 212 (275)
..|++||++||||||++-+|. +.++..-..++...+. ..... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 478999999999999999987 2233211111111000 00000 01
Q ss_pred cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 213 KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 213 ~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
++.++.+|||||......+.+.++.. +.... .++-+++|+|++ .+++..+|+.-|.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~--~~~~~-~~~~~~LVlsa~--~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKK--LLEAL-NPDEVHLVLSAT--MGQEDLEQALAFY 137 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHH--HHHHH-SSSEEEEEEEGG--GGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHH--Hhhhc-CCccceEEEecc--cChHHHHHHHHHh
Confidence 23569999999987544333333322 11111 257899999999 6676666666553
No 296
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.50 E-value=1.1e-06 Score=73.30 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-c------cccCCC---cccceEEEEEEecC-eeEEEEeCCCCCCCCCCchhH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-D------VQPYAF---TTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDHNI 235 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~------v~~~~~---tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ 235 (275)
...+|+++|.-++||||++.+++...+ . ...+-. ||.....|++.+.+ ..+.++||||.. +
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~--------R 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE--------R 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH--------H
Confidence 356899999999999999999997653 1 112223 78888888888876 789999999954 2
Q ss_pred HHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 236 IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 236 ~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
...+ +..+.+.++..++++|.+.+.-..+..-+++|.
T Consensus 81 F~fm-~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~ 117 (187)
T COG2229 81 FKFM-WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLT 117 (187)
T ss_pred HHHH-HHHHhCCcceEEEEEecCCCcchHHHHHHHHHh
Confidence 2222 455555568999999999765544555555543
No 297
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.50 E-value=7.5e-07 Score=84.51 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=56.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEe---------------------c-----CeeE
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDY---------------------K-----YLRY 217 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~---------------------~-----~~~~ 217 (275)
...+|+++|..++|||||+.+|++.... ..-..+.|.+.......+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 4468999999999999999999764211 011122333322211111 0 2578
Q ss_pred EEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC-CCCHHHHHHHH
Q 035873 218 QVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC-GYSIAQQAALF 272 (275)
Q Consensus 218 ~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~-g~~~~~q~~l~ 272 (275)
.+|||||.. .+..........+ |++++|+|++++. .....+.+.++
T Consensus 88 ~liDtPG~~--------~f~~~~~~~~~~~-D~~llVVDa~~~~~~~~t~~~l~~l 134 (411)
T PRK04000 88 SFVDAPGHE--------TLMATMLSGAALM-DGAILVIAANEPCPQPQTKEHLMAL 134 (411)
T ss_pred EEEECCCHH--------HHHHHHHHHHhhC-CEEEEEEECCCCCCChhHHHHHHHH
Confidence 999999932 2222233444443 9999999999764 33334444443
No 298
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.49 E-value=1e-06 Score=79.39 Aligned_cols=92 Identities=23% Similarity=0.283 Sum_probs=50.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCccccc--CC------CcccceEEEEEEe--cC--eeEEEEeCCCCCCCCCCc----
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQP--YA------FTTKSLFVGHTDY--KY--LRYQVIDTPGILDRPFED---- 232 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~--~~------~tT~~~~~~~~~~--~~--~~~~liDTpG~~~~~~~~---- 232 (275)
.+|+++|.+|+|||||||.|.+....... ++ ..|.......... ++ ..+.++||||+.+...+.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 57999999999999999999987653221 11 1122222222222 23 257899999998754331
Q ss_pred --hhHHHHHHHHHHHhc------------cceeEEEEeCCCC
Q 035873 233 --HNIIEMCSITALAHL------------RSAVLFFLDISGS 260 (275)
Q Consensus 233 --~~~~e~~~~~~l~~~------------~d~il~viD~s~~ 260 (275)
.+.++.+....+.+. .|++||+++++..
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~ 126 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH 126 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc
Confidence 111222222222211 1589999999853
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.49 E-value=9.3e-07 Score=89.65 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=62.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCccc----------cc------CCCcccceEEEEEEe----cCeeEEEEeCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDV----------QP------YAFTTKSLFVGHTDY----KYLRYQVIDTPGIL 226 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v----------~~------~~~tT~~~~~~~~~~----~~~~~~liDTpG~~ 226 (275)
+...|+++|..++|||||+.+|....-.+ .+ .-+.|.......+.| ++..+.++||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 44589999999999999999996322110 00 012344444444444 35678999999987
Q ss_pred CCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 227 DRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
+. ......+++.+ |++++|+|+.+.........+..
T Consensus 99 df--------~~~~~~~l~~~-D~avlVvda~~g~~~~t~~~~~~ 134 (731)
T PRK07560 99 DF--------GGDVTRAMRAV-DGAIVVVDAVEGVMPQTETVLRQ 134 (731)
T ss_pred Ch--------HHHHHHHHHhc-CEEEEEEECCCCCCccHHHHHHH
Confidence 52 12334566666 99999999997655554444443
No 300
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.48 E-value=1.3e-06 Score=82.39 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=56.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC-------CcccccCCC-ccc----------ceEEEEEE------------ecCeeE
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA-------DVDVQPYAF-TTK----------SLFVGHTD------------YKYLRY 217 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~-------~~~v~~~~~-tT~----------~~~~~~~~------------~~~~~~ 217 (275)
...++++|++||||||++.+|... ++.+...+. -+. ........ -.+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 346899999999999999988731 222111111 000 00000010 024588
Q ss_pred EEEeCCCCCCCCCCchhHHHHHHHHHHHh-ccceeEEEEeCCCCCCC-CHHHHHHHHh
Q 035873 218 QVIDTPGILDRPFEDHNIIEMCSITALAH-LRSAVLFFLDISGSCGY-SIAQQAALFH 273 (275)
Q Consensus 218 ~liDTpG~~~~~~~~~~~~e~~~~~~l~~-~~d~il~viD~s~~~g~-~~~~q~~l~~ 273 (275)
.+|||||+..+..+.+.++... ...... .+.-+++|+|++ .++ .+.++++.|+
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~-~~~~~~~~~~e~~LVLsAt--~~~~~~~~~~~~f~ 357 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSF-YSCFGEKDSVENLLVLSST--SSYHHTLTVLKAYE 357 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHH-HHhhcCCCCCeEEEEEeCC--CCHHHHHHHHHHhc
Confidence 9999999876554433333221 111111 134689999999 566 5666666654
No 301
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=1.4e-06 Score=75.81 Aligned_cols=96 Identities=25% Similarity=0.321 Sum_probs=63.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc--------cccCCCcccceEEEEEEec-Ce--eEEEEeCCCCCCCCCCchhHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD--------VQPYAFTTKSLFVGHTDYK-YL--RYQVIDTPGILDRPFEDHNII 236 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~--------v~~~~~tT~~~~~~~~~~~-~~--~~~liDTpG~~~~~~~~~~~~ 236 (275)
.+.|++||..|.||||++|.|...++. ..++|.||.--...|+..+ +. ++.++||||+.|.-.++ +-|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~-ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND-NCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc-chh
Confidence 468999999999999999999855432 2356666655555555433 33 56899999998875543 333
Q ss_pred H-------HHHHHHH---------Hhcc----ceeEEEEeCCCCCCCC
Q 035873 237 E-------MCSITAL---------AHLR----SAVLFFLDISGSCGYS 264 (275)
Q Consensus 237 e-------~~~~~~l---------~~~~----d~il~viD~s~~~g~~ 264 (275)
| .+.-..| ++.+ +++||.+-+++.+-..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrp 172 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRP 172 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCc
Confidence 2 1111222 2334 3799999998876543
No 302
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.46 E-value=1.3e-06 Score=84.10 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcchh
Q 035873 47 YMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDH 91 (275)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d~ 91 (275)
.+..+...++.|.+.+.++.......+ +|+..+|.+.|...|.
T Consensus 168 l~~El~~lr~~l~~~~~~l~~~~~~~~--~p~~~~l~~~Ll~~dv 210 (484)
T PRK06995 168 VMQELRSLRGMLEEQLASLAWGERQRR--DPVRAALLKHLLAAGF 210 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc--cHHHHHHHHHHHHCCC
Confidence 445567777777777777653322333 5899999999988774
No 303
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=2.9e-07 Score=86.05 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc------CCcccccC-CCc------------ccceEEEEE-------------E-ec
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR------ADVDVQPY-AFT------------TKSLFVGHT-------------D-YK 213 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~-~~t------------T~~~~~~~~-------------~-~~ 213 (275)
.+..|+++|++||||||++.+|+. .++.+... ++. ..+...... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 456899999999999999999962 22221111 100 000000000 0 01
Q ss_pred CeeEEEEeCCCCCCCCCCchhHHHHHHHHHH-HhccceeEEEEeCCCCCCC-CHHHHHHHHhc
Q 035873 214 YLRYQVIDTPGILDRPFEDHNIIEMCSITAL-AHLRSAVLFFLDISGSCGY-SIAQQAALFHS 274 (275)
Q Consensus 214 ~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l-~~~~d~il~viD~s~~~g~-~~~~q~~l~~e 274 (275)
+.++.||||||...+..+.+.++ ...+ ...++.+++|+|++ ++. .+.+|++.|+.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL----~~~lk~~~PdevlLVLsAT--tk~~d~~~i~~~F~~ 376 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEM----IETMGQVEPDYICLTLSAS--MKSKDMIEIITNFKD 376 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHH----HHHHhhcCCCeEEEEECCc--cChHHHHHHHHHhcC
Confidence 24789999999876443333333 2222 23357899999997 444 55778877764
No 304
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.42 E-value=1.2e-06 Score=82.35 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+..|+++|++||||||++.+|+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 305
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.42 E-value=1.6e-06 Score=89.25 Aligned_cols=92 Identities=18% Similarity=0.121 Sum_probs=58.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCccc----------cc------CCCcccceEEEEEEec----------------C
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDV----------QP------YAFTTKSLFVGHTDYK----------------Y 214 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v----------~~------~~~tT~~~~~~~~~~~----------------~ 214 (275)
....|+++|..++|||||+++|....-.+ .+ .-+.|.......+.|. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45689999999999999999997432110 00 0123333333444553 4
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHH
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQ 267 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~ 267 (275)
..+.++||||..+ +-.....+++.+ |++++|+|++++.....+.
T Consensus 98 ~~inliDtPGh~d--------F~~e~~~al~~~-D~ailVvda~~Gv~~~t~~ 141 (843)
T PLN00116 98 YLINLIDSPGHVD--------FSSEVTAALRIT-DGALVVVDCIEGVCVQTET 141 (843)
T ss_pred eEEEEECCCCHHH--------HHHHHHHHHhhc-CEEEEEEECCCCCcccHHH
Confidence 5689999999653 222235566555 9999999999765443333
No 306
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.40 E-value=9e-07 Score=75.50 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=49.3
Q ss_pred ceeEeeccCCCCHHHHHH-HHhcCCc----ccccCCCccc--ceEEEE--------EEecC--eeEEEEeCCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMN-KITRADV----DVQPYAFTTK--SLFVGH--------TDYKY--LRYQVIDTPGILDRPFE 231 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin-~l~~~~~----~v~~~~~tT~--~~~~~~--------~~~~~--~~~~liDTpG~~~~~~~ 231 (275)
.+|+++|.+|||||||+. .+.+... ....+..|.. +..... ..+++ ..+++|||||..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 479999999999999996 5544322 1223322221 111111 12333 46799999996421
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
+ ....++. +|++++|+|.+++..
T Consensus 80 ----~---~~~~~~~-ad~iilv~d~t~~~S 102 (195)
T cd01873 80 ----D---RRFAYGR-SDVVLLCFSIASPNS 102 (195)
T ss_pred ----h---hcccCCC-CCEEEEEEECCChhH
Confidence 0 1123444 499999999996543
No 307
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.40 E-value=5.5e-07 Score=81.43 Aligned_cols=58 Identities=22% Similarity=0.096 Sum_probs=40.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc-c-------ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD-V-------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~-v-------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
..++++|.+|||||||+|.|++.... + +...+||.......+.. ...++||||+.+-.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 37999999999999999999976421 1 13344666654433321 23799999996533
No 308
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.7e-06 Score=81.63 Aligned_cols=135 Identities=21% Similarity=0.267 Sum_probs=81.7
Q ss_pred hcccCccccchhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHh---ccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCC
Q 035873 116 LLKYGDSLYCCKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHM---ARLPSIDPNTRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 116 ~ik~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l---~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
+++.|.....++....++.|+|.....+..+ +++-..+. .+.|.-.+.++.++++|+||+||||||..|...-
T Consensus 18 k~~dg~~g~naKafavAa~G~mar~~~rtad----i~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 18 KVMDGKVGNNAKAFAVAAIGQMARQAMRTAD----IEEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred hhhccccccchhhhhhhchHHHHHHHhhccc----hhhhccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 3444555556777788888888776555432 11111111 1234445667788899999999999999986432
Q ss_pred cccccCCCcccceEEEEEEe---cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHH
Q 035873 193 VDVQPYAFTTKSLFVGHTDY---KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269 (275)
Q Consensus 193 ~~v~~~~~tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~ 269 (275)
.. .|.+-..|.+++ ...++++..+|.=+ .+...++..+|+||++||+.........+-+
T Consensus 94 tk------~ti~~i~GPiTvvsgK~RRiTflEcp~Dl------------~~miDvaKIaDLVlLlIdgnfGfEMETmEFL 155 (1077)
T COG5192 94 TK------QTIDEIRGPITVVSGKTRRITFLECPSDL------------HQMIDVAKIADLVLLLIDGNFGFEMETMEFL 155 (1077)
T ss_pred HH------hhhhccCCceEEeecceeEEEEEeChHHH------------HHHHhHHHhhheeEEEeccccCceehHHHHH
Confidence 21 122222222221 23588999998511 1245567778999999999944444555556
Q ss_pred HHH
Q 035873 270 ALF 272 (275)
Q Consensus 270 ~l~ 272 (275)
.++
T Consensus 156 nil 158 (1077)
T COG5192 156 NIL 158 (1077)
T ss_pred HHH
Confidence 554
No 309
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.37 E-value=7.6e-07 Score=80.16 Aligned_cols=58 Identities=21% Similarity=0.136 Sum_probs=41.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc-c---c----ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADV-D---V----QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~-~---v----~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
..+++|.+|||||||+|+|.+... . + +..-+||.....-++. ..-+|+||||+-.-..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~---~gG~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP---GGGWIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC---CCCEEEeCCCCCccCc
Confidence 678999999999999999986432 1 2 2344577666555542 3457999999966544
No 310
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=2.3e-06 Score=68.99 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=63.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..++.++|-..|||||++-+-.+.....+-+.+...+.....+.-.. .++|+|||+|.. .+...+-..++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE--------ryrtiTTayyR 92 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE--------RYRTITTAYYR 92 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccch--------hhhHHHHHHhh
Confidence 45899999999999999999988777665555444554444443333 367999999953 23333334455
Q ss_pred hccceeEEEEeCCCCCCCCHHHH
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQ 268 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q 268 (275)
.. +++|+++|.++....+..+.
T Consensus 93 ga-mgfiLmyDitNeeSf~svqd 114 (193)
T KOG0093|consen 93 GA-MGFILMYDITNEESFNSVQD 114 (193)
T ss_pred cc-ceEEEEEecCCHHHHHHHHH
Confidence 54 99999999997765554443
No 311
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=71.58 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=61.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-C--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..++.+||-.-||||||+..++..+..--.-|+...+.....++.. | .++|+|||+|. ....-.+...+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq--------erfrsitksyy 79 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ--------ERFRSITKSYY 79 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch--------HHHHHHHHHHh
Confidence 3578899999999999999999877653334555555555555543 3 36799999994 34444566777
Q ss_pred HhccceeEEEEeCCCCCC
Q 035873 245 AHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g 262 (275)
++. -.+++|+|.++...
T Consensus 80 rns-vgvllvyditnr~s 96 (213)
T KOG0091|consen 80 RNS-VGVLLVYDITNRES 96 (213)
T ss_pred hcc-cceEEEEeccchhh
Confidence 776 67999999996543
No 312
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.30 E-value=5.6e-06 Score=73.43 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=63.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEecCeeEEEEeCCC-----CCCCCCCchhHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYKYLRYQVIDTPG-----ILDRPFEDHNIIE 237 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~~~~~~~liDTpG-----~~~~~~~~~~~~e 237 (275)
.+.+.+++.|-+|||||||+|.+...+.. ..+.++.|+..+.-++ +.++.++|.|| .-.....+.+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~--- 207 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWD--- 207 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHh---
Confidence 45678999999999999999999977642 3446777777665543 57899999999 4444443333
Q ss_pred HHHHHHHHhcc--ceeEEEEeCCCCCCC
Q 035873 238 MCSITALAHLR--SAVLFFLDISGSCGY 263 (275)
Q Consensus 238 ~~~~~~l~~~~--d~il~viD~s~~~g~ 263 (275)
+.+...+-+-. -.+.+++|++.+.-.
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~ 235 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQP 235 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCC
Confidence 33343443332 347888999866543
No 313
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.20 E-value=3.7e-06 Score=78.30 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=43.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc---cccC--CCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD---VQPY--AFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~---v~~~--~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
+..|+|+|.+|+|||||||+|.|-..+ .++. .-||..+..-. .-+...+.+||.||+..........++. .
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~~~Yl~~---~ 110 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPPEEYLKE---V 110 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHH---T
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCHHHHHHH---c
Confidence 458999999999999999999874322 2221 12344433221 1122468999999987654333221111 1
Q ss_pred HHHhccceeEEEEeC
Q 035873 243 ALAHLRSAVLFFLDI 257 (275)
Q Consensus 243 ~l~~~~d~il~viD~ 257 (275)
-+... |.+|++.+-
T Consensus 111 ~~~~y-D~fiii~s~ 124 (376)
T PF05049_consen 111 KFYRY-DFFIIISSE 124 (376)
T ss_dssp TGGG--SEEEEEESS
T ss_pred ccccc-CEEEEEeCC
Confidence 12222 877777554
No 314
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.19 E-value=1.2e-05 Score=77.11 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=58.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC----------c---------------------ccccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD----------V---------------------DVQPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~----------~---------------------~v~~~~~tT~~~~~~~~~~~~~~ 216 (275)
...|+++|..++|||||+.+|+... . .....-+.|.+....++++++..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 4579999999999999999886210 0 00111345777767777778889
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
+.++||||.. .+-......+.. +|++++|+|+++.
T Consensus 87 i~liDtPGh~--------df~~~~~~g~~~-aD~aIlVVda~~G 121 (447)
T PLN00043 87 CTVIDAPGHR--------DFIKNMITGTSQ-ADCAVLIIDSTTG 121 (447)
T ss_pred EEEEECCCHH--------HHHHHHHhhhhh-ccEEEEEEEcccC
Confidence 9999999943 232333455554 4999999999864
No 315
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=2.7e-06 Score=72.62 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh--
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH-- 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~-- 246 (275)
..|.++|..++|||+|+-.|..... ....|...++.+.+.+++....+||-||-. .........+.|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~---~~TvtSiepn~a~~r~gs~~~~LVD~PGH~--------rlR~kl~e~~~~~~ 107 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH---RGTVTSIEPNEATYRLGSENVTLVDLPGHS--------RLRRKLLEYLKHNY 107 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc---cCeeeeeccceeeEeecCcceEEEeCCCcH--------HHHHHHHHHccccc
Confidence 5799999999999999998875522 112355667778887787889999999932 233333455665
Q ss_pred ccceeEEEEeCCC
Q 035873 247 LRSAVLFFLDISG 259 (275)
Q Consensus 247 ~~d~il~viD~s~ 259 (275)
.+-+|+||+|+..
T Consensus 108 ~akaiVFVVDSa~ 120 (238)
T KOG0090|consen 108 SAKAIVFVVDSAT 120 (238)
T ss_pred cceeEEEEEeccc
Confidence 3478999999864
No 316
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.1e-05 Score=64.62 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=59.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
..+|+.+|..++||||++.+|.-..+. +-+ |.+.+...+++.+..+.+||..|.. .+.......+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGGqd--------~iRplWrhYy~g 84 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQD--------KIRPLWRHYYTG 84 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEeeeeEEeeeeccCch--------hhhHHHHhhccC
Confidence 457999999999999999999754433 222 6777888899999999999999953 233332333333
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
..++|||+|+++.
T Consensus 85 -tqglIFV~Dsa~~ 97 (180)
T KOG0071|consen 85 -TQGLIFVVDSADR 97 (180)
T ss_pred -CceEEEEEeccch
Confidence 3789999999854
No 317
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=6e-06 Score=68.33 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=60.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc---ccc--cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV---DVQ--PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~---~v~--~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
...|++.|..|+||||++-++..... ... ..-.+|.+.+.+++.+.+..+.+||.-|.- ..+..+ -.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe----~lrSlw----~~ 88 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE----SLRSLW----KK 88 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH----HHHHHH----HH
Confidence 45799999999999999988753221 111 122468899999999999999999999942 122222 23
Q ss_pred HHHhccceeEEEEeCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~ 261 (275)
.+.. +++++||||++++.
T Consensus 89 yY~~-~H~ii~viDa~~~e 106 (197)
T KOG0076|consen 89 YYWL-AHGIIYVIDATDRE 106 (197)
T ss_pred HHHH-hceeEEeecCCCHH
Confidence 3344 49999999999643
No 318
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.1e-05 Score=64.54 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcc-cceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTT-KSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT-~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
..++-.++|.-|||||.|+..++.++. +++.|.|- ...-...+++.+. ++|+|||+|. ..+...+...
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf-madcphtigvefgtriievsgqkiklqiwdtagq--------erfravtrsy 80 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--------ERFRAVTRSY 80 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH-hhcCCcccceecceeEEEecCcEEEEEEeecccH--------HHHHHHHHHH
Confidence 345678999999999999999986654 45555432 2222333455543 6799999993 3343344455
Q ss_pred HHhccceeEEEEeCCCCCCCCHHHH
Q 035873 244 LAHLRSAVLFFLDISGSCGYSIAQQ 268 (275)
Q Consensus 244 l~~~~d~il~viD~s~~~g~~~~~q 268 (275)
++.. ...|+|.|.+....++-.+.
T Consensus 81 yrga-agalmvyditrrstynhlss 104 (215)
T KOG0097|consen 81 YRGA-AGALMVYDITRRSTYNHLSS 104 (215)
T ss_pred hccc-cceeEEEEehhhhhhhhHHH
Confidence 5554 67889999987766664443
No 319
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.7e-05 Score=76.00 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec---CeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
.++|.|.+.|+---|||||+.+|-+.++......+.|.+.-..++.++ ...++++||||-. +..
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-------------AFt 69 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-------------AFT 69 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-------------HHH
Confidence 467899999999999999999999988887777788988877777774 3689999999932 223
Q ss_pred HH----HhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 243 AL----AHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 243 ~l----~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.+ ..+.|.+++|+|+.+..-..-.+-+++++
T Consensus 70 ~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak 104 (509)
T COG0532 70 AMRARGASVTDIAILVVAADDGVMPQTIEAINHAK 104 (509)
T ss_pred HHHhcCCccccEEEEEEEccCCcchhHHHHHHHHH
Confidence 33 24469999999999876655555555554
No 320
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=0.0002 Score=67.04 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....++++|++||||||++.+|..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999974
No 321
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.08 E-value=5.5e-05 Score=72.11 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.3
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...++++|++||||||++.+|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999988875
No 322
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.05 E-value=1.3e-05 Score=68.52 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||+|..++.+... +..|..|.-+.....+..++. .+.|+||+|..+.+ .+. ...++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~--~~~------~~~~~ 73 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS--AMR------DLYIR 73 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECCEEEEEEEEcCCCcccCh--HHH------HHhhc
Confidence 45799999999999999998875544 344666777777788777765 56799999933211 111 12344
Q ss_pred hccceeEEEEeCCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~ 263 (275)
.. |+.++|++.++....
T Consensus 74 ~~-~gF~lVysitd~~SF 90 (196)
T KOG0395|consen 74 NG-DGFLLVYSITDRSSF 90 (196)
T ss_pred cC-cEEEEEEECCCHHHH
Confidence 44 899999999966443
No 323
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=2.7e-05 Score=78.05 Aligned_cols=94 Identities=23% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc---CCcc---cc------------cCCCcccceEEEEEEecC-eeEEEEeCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR---ADVD---VQ------------PYAFTTKSLFVGHTDYKY-LRYQVIDTPGILD 227 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~---~~~~---v~------------~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~ 227 (275)
+...|+++|+-.+|||||.-+|.- .-.. +. ..-+.|.......+.|.+ .++.+|||||..|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 456899999999999999988862 1111 11 112456666666788996 9999999999887
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCC---CHHHHH
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGY---SIAQQA 269 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~---~~~~q~ 269 (275)
...+ . ..+++-+ |+.+.|+|+.+.... .++.|+
T Consensus 89 Ft~E----V----~rslrvl-DgavvVvdaveGV~~QTEtv~rqa 124 (697)
T COG0480 89 FTIE----V----ERSLRVL-DGAVVVVDAVEGVEPQTETVWRQA 124 (697)
T ss_pred cHHH----H----HHHHHhh-cceEEEEECCCCeeecHHHHHHHH
Confidence 5432 2 3567767 999999999876443 344444
No 324
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.04 E-value=3e-05 Score=71.45 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.....|++.|.||+|||||++.|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999874
No 325
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.02 E-value=3.9e-05 Score=70.57 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=56.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccc----cCCC----cccceEEEEEEe--cCe--eEEEEeCCCCCCCCCCc--
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQ----PYAF----TTKSLFVGHTDY--KYL--RYQVIDTPGILDRPFED-- 232 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~----~~~~----tT~~~~~~~~~~--~~~--~~~liDTpG~~~~~~~~-- 232 (275)
-..+|+++|..|.||||++|.|.+....-. +... .|.......... ++. ++.++||||+.+.-.+.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 456899999999999999999997743211 1111 122222222222 333 57899999998765442
Q ss_pred ----hhHHHHHHHHHHHhc-------------cceeEEEEeCCCCC
Q 035873 233 ----HNIIEMCSITALAHL-------------RSAVLFFLDISGSC 261 (275)
Q Consensus 233 ----~~~~e~~~~~~l~~~-------------~d~il~viD~s~~~ 261 (275)
.+.++.+.-.+|.+- .+++||.+-+++.+
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~ 147 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG 147 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC
Confidence 122222322333221 15899999988654
No 326
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=2.6e-05 Score=71.75 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEecC-----------------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYKY----------------------------- 214 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~~~----------------------------- 214 (275)
..+.|+++|.-..||||+|+-|+..+.. +++.|+|-.-...-+-.-.+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4568999999999999999999977643 66666443222211110000
Q ss_pred ----------eeEEEEeCCCCCCCCCCchhHH--HHHHHHHHHhccceeEEEEeCCC-CCCCCHHHHHH
Q 035873 215 ----------LRYQVIDTPGILDRPFEDHNII--EMCSITALAHLRSAVLFFLDISG-SCGYSIAQQAA 270 (275)
Q Consensus 215 ----------~~~~liDTpG~~~~~~~~~~~~--e~~~~~~l~~~~d~il~viD~s~-~~g~~~~~q~~ 270 (275)
.++.+|||||++.....-.... .-.......+-+|.|++++|+.. ..+...++-+.
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~ 205 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVID 205 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHH
Confidence 4689999999997543311111 11223444555699999999864 23334444333
No 327
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=2e-05 Score=64.85 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...++++.|..|+|||||++.|...... +..| |..+....+..++.+++.+|.-|-. .-++.+..+--
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvP--TlHPTSE~l~Ig~m~ftt~DLGGH~---------qArr~wkdyf~ 86 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVP--TLHPTSEELSIGGMTFTTFDLGGHL---------QARRVWKDYFP 86 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCC--CcCCChHHheecCceEEEEccccHH---------HHHHHHHHHHh
Confidence 3458999999999999999999755432 2222 6666677778888999999999932 22233333322
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
..|+|+|++|+-+.
T Consensus 87 ~v~~iv~lvda~d~ 100 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQ 100 (193)
T ss_pred hhceeEeeeehhhH
Confidence 34999999999754
No 328
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=6e-05 Score=71.53 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
....++++|.+|+||||++.+|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988753
No 329
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=6.6e-05 Score=69.38 Aligned_cols=94 Identities=22% Similarity=0.233 Sum_probs=56.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-------cccCCCcccceEEEEEEe--cCe--eEEEEeCCCCCCCCCC---c
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-------VQPYAFTTKSLFVGHTDY--KYL--RYQVIDTPGILDRPFE---D 232 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-------v~~~~~tT~~~~~~~~~~--~~~--~~~liDTpG~~~~~~~---~ 232 (275)
-.++++++|..|.|||||||.|.+.... ....+-.|.......... +|. ++.|+||||+.|.-.+ +
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 3568999999999999999999876322 111222233333333333 233 5789999999875333 2
Q ss_pred ---hhHHHHHHHHHHHhc------------cceeEEEEeCCCC
Q 035873 233 ---HNIIEMCSITALAHL------------RSAVLFFLDISGS 260 (275)
Q Consensus 233 ---~~~~e~~~~~~l~~~------------~d~il~viD~s~~ 260 (275)
.+.++-+...++.+- .++.||.|-+++.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh 142 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH 142 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC
Confidence 122222322333221 1579999998865
No 330
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.94 E-value=7.3e-05 Score=68.01 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=35.4
Q ss_pred HHhhhHHHHHHhhCchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhc
Q 035873 132 AALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 132 ~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+++|+.+..+..... ....+..+.........|+++|+||+|||||++.|..
T Consensus 4 ~~~~~~~~~~e~~~~~------~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 4 RALARAITLVENRHPE------AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHHHHHhCCChH------HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3566777766655432 1222334444445677899999999999999999763
No 331
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.90 E-value=0.00042 Score=64.95 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|++||++||||||.+.+|..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 66899999999999999999974
No 332
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=6e-05 Score=70.44 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
....++++|++||||||++.+|.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999987
No 333
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=5.6e-05 Score=70.51 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=56.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC---------------------C----------cccccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA---------------------D----------VDVQPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~---------------------~----------~~v~~~~~tT~~~~~~~~~~~~~~ 216 (275)
...++++|++.+|||||+.+|.-. . ......-|.|.+.....++-+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 347899999999999999998711 1 001233566777666666666678
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
+.++|+||.-+ +-+..+.- ...+|+.++|+|++..
T Consensus 87 ~tIiDaPGHrd--------FvknmItG-asqAD~aVLVV~a~~~ 121 (428)
T COG5256 87 FTIIDAPGHRD--------FVKNMITG-ASQADVAVLVVDARDG 121 (428)
T ss_pred EEEeeCCchHH--------HHHHhhcc-hhhccEEEEEEECCCC
Confidence 99999999221 11111222 3335999999999865
No 334
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.82 E-value=1.5e-05 Score=70.65 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHh
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
..++..|+++|..|+||||++.+|.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~ 40 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLN 40 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHH
Confidence 3467789999999999999999987
No 335
>PRK13768 GTPase; Provisional
Probab=97.81 E-value=3.9e-05 Score=68.15 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=17.9
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..+++.|.+|+||||+...+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~ 23 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALS 23 (253)
T ss_pred EEEEEECCCCccHHHHHHHHH
Confidence 368899999999999887765
No 336
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.79 E-value=4.2e-05 Score=60.19 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=48.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
.++++||..|+|||||.++|.|....-.. .+-++|++. ..|||||-.-. +..-..++.+....+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK---------TQAve~~d~--~~IDTPGEy~~-----~~~~Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK---------TQAVEFNDK--GDIDTPGEYFE-----HPRWYHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc---------cceeeccCc--cccCCchhhhh-----hhHHHHHHHHHhhcc
Confidence 37899999999999999999987654211 122334322 35899995421 111122344444445
Q ss_pred ceeEEEEeCCCC
Q 035873 249 SAVLFFLDISGS 260 (275)
Q Consensus 249 d~il~viD~s~~ 260 (275)
|++++|..+.++
T Consensus 66 dvi~~v~~and~ 77 (148)
T COG4917 66 DVIIYVHAANDP 77 (148)
T ss_pred ceeeeeecccCc
Confidence 889999888765
No 337
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.76 E-value=3.3e-05 Score=63.63 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.3
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.++++|+.|+||||+++.+.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999988754
No 338
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00019 Score=69.16 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=64.8
Q ss_pred CCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe-cCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 164 IDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 164 ~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
..+++|.|-+.|+---|||||+.+|.+..+......+.|.++-...+.. .|.++++.||||-. +..
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-------------AF~ 215 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHA-------------AFS 215 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHH-------------HHH
Confidence 4468899999999999999999999888877666677787765555554 57899999999932 122
Q ss_pred HH----HhccceeEEEEeCCCCCCC
Q 035873 243 AL----AHLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 243 ~l----~~~~d~il~viD~s~~~g~ 263 (275)
++ +...|.|++|+-+.+..-.
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmp 240 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMP 240 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccH
Confidence 22 2334788888888766543
No 339
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.75 E-value=0.00015 Score=69.70 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=22.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
...|+++|.-..|||||+.+|+|..
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999754
No 340
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.74 E-value=2.6e-05 Score=69.92 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC------Ccc-cccCCC------------cccceEEEE-E-------------Eec
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA------DVD-VQPYAF------------TTKSLFVGH-T-------------DYK 213 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~------~~~-v~~~~~------------tT~~~~~~~-~-------------~~~ 213 (275)
....++++|.+|+||||++..|++. .+. +..-++ ...+..... . ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3468999999999999999888632 111 110000 000100000 0 011
Q ss_pred CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh-ccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 214 YLRYQVIDTPGILDRPFEDHNIIEMCSITALAH-LRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 214 ~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~-~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
+.++.++||||......+.+.++. ..+.. .++-+++|+|++. .+..+.+|++-|+.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~----~~~~~~~~~~~~LVl~a~~-~~~d~~~~~~~f~~ 210 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMI----ETMGQVEPDYICLTLSASM-KSKDMIEIITNFKD 210 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHH----HHHhhhCCCeEEEEEcCcc-CHHHHHHHHHHhCC
Confidence 358899999998765433333332 22222 2478999999982 23467788887764
No 341
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00012 Score=68.82 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=57.1
Q ss_pred ceeEeeccCCCCHHHHHHHHh--cCCcc--------------cc------cCCCcccceEEEEEEecCeeEEEEeCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKIT--RADVD--------------VQ------PYAFTTKSLFVGHTDYKYLRYQVIDTPGIL 226 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~--~~~~~--------------v~------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~ 226 (275)
.+.+||-+|-+|||||..+|. |.... .+ ..-+......+=.+.|++..+.+.||||--
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 478999999999999999876 21111 11 112233333444567788899999999976
Q ss_pred CCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 227 DRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
|-+.+ ++..|... |+.++|||+....
T Consensus 93 DFSED--------TYRtLtAv-DsAvMVIDaAKGi 118 (528)
T COG4108 93 DFSED--------TYRTLTAV-DSAVMVIDAAKGI 118 (528)
T ss_pred ccchh--------HHHHHHhh-heeeEEEecccCc
Confidence 65422 35556555 9999999998653
No 342
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.69 E-value=0.00026 Score=57.67 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=60.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC-CcccccCCCcccceEEEEEEecC---eeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA-DVDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~-~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
...+|+++|.-+||||+++..|.-. ++.-.++-.|--+...+.++-+. ..+.+.||.|+-..+.+. -.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL--------pr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL--------PR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh--------hH
Confidence 3457999999999999999998744 44444444466677777766432 367899999987654322 12
Q ss_pred HHHhccceeEEEEeCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~ 261 (275)
.+-+.+|+.++|.|+.++-
T Consensus 80 hy~q~aDafVLVYs~~d~e 98 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPE 98 (198)
T ss_pred hHhccCceEEEEecCCCHH
Confidence 3444569999999987653
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.64 E-value=0.0006 Score=56.56 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=30.3
Q ss_pred CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh--ccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 214 YLRYQVIDTPGILDRPFEDHNIIEMCSITALAH--LRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 214 ~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~--~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
+.++.++||||...... ..++. +..+.+ .+|.+++|+|+. .+.+..+++..+
T Consensus 82 ~~d~viiDt~g~~~~~~---~~l~~--l~~l~~~~~~~~~~lVv~~~--~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDE---NLMEE--LKKIKRVVKPDEVLLVVDAM--TGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhH---HHHHH--HHHHHhhcCCCeEEEEEECC--CChHHHHHHHHH
Confidence 34689999999764211 12221 122222 268999999996 445555555544
No 344
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=2.9e-05 Score=62.45 Aligned_cols=88 Identities=27% Similarity=0.308 Sum_probs=61.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
...+|.+.|..|+||+|++-.+--.++ ..-| |.+.+...+.+++..+++||.-|...-.+ ..+..++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkP----tigfnve~v~yKNLk~~vwdLggqtSirP--------yWRcYy~ 84 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKP----TIGFNVETVPYKNLKFQVWDLGGQTSIRP--------YWRCYYA 84 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCC----CCCcCccccccccccceeeEccCcccccH--------HHHHHhc
Confidence 445899999999999998776643332 2333 44555667778889999999999653211 1233445
Q ss_pred hccceeEEEEeCCCCCCCCHHH
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQ 267 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~ 267 (275)
+. |+++||+|.++.|..++..
T Consensus 85 dt-~avIyVVDssd~dris~a~ 105 (182)
T KOG0072|consen 85 DT-DAVIYVVDSSDRDRISIAG 105 (182)
T ss_pred cc-ceEEEEEeccchhhhhhhH
Confidence 54 9999999999988665443
No 345
>PRK01889 GTPase RsgA; Reviewed
Probab=97.63 E-value=7.6e-05 Score=69.59 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=37.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-ccccC-------CCcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-DVQPY-------AFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-~v~~~-------~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
.+++++|.+|+|||||+|.|.+... ..+.. ..+|.......+. ....++||||+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~---~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP---SGGLLIDTPGMRELQ 261 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec---CCCeecCCCchhhhc
Confidence 3799999999999999999997542 22221 2244433333321 234688999995543
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00022 Score=69.32 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=54.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc--------CCcccccCCCcc-------------cceEEEEE-----------EecC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR--------ADVDVQPYAFTT-------------KSLFVGHT-----------DYKY 214 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~--------~~~~v~~~~~tT-------------~~~~~~~~-----------~~~~ 214 (275)
....|+++|.+|+||||++.+|.. .++.+-..+... .+...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 356899999999999999998873 122211111100 00001100 0123
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.++.||||||........+..+. .+.... ....++|++++. ......+.++.|.
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~--~L~aa~--~~a~lLVLpAts-s~~Dl~eii~~f~ 482 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLN--WLRAAR--QVTSLLVLPANA-HFSDLDEVVRRFA 482 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHH--HHHHhh--cCCcEEEEECCC-ChhHHHHHHHHHH
Confidence 57899999998753322211111 112212 246788999874 2345556666554
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.61 E-value=0.00013 Score=64.49 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+..+|++-|+||+|||||+++|.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHH
Confidence 456799999999999999999986
No 348
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=3.8e-05 Score=62.78 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=50.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC-----------eeEEEEeCCCCCCCCCCchhHHHH
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-----------LRYQVIDTPGILDRPFEDHNIIEM 238 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-----------~~~~liDTpG~~~~~~~~~~~~e~ 238 (275)
+.+..|-.||||||++-..+..+....-..+...+.....+.|+. ..+|+|||+|. +.+.-
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ--------ERFRS 82 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ--------ERFRS 82 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH--------HHHHH
Confidence 345679999999999988876654432222222333333333321 25799999994 33333
Q ss_pred HHHHHHHhccceeEEEEeCCCC
Q 035873 239 CSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 239 ~~~~~l~~~~d~il~viD~s~~ 260 (275)
.+-...+.. -..|+++|.+..
T Consensus 83 LTTAFfRDA-MGFlLiFDlT~e 103 (219)
T KOG0081|consen 83 LTTAFFRDA-MGFLLIFDLTSE 103 (219)
T ss_pred HHHHHHHhh-ccceEEEeccch
Confidence 344455544 678999999854
No 349
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.60 E-value=7.7e-05 Score=65.70 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=15.2
Q ss_pred eeccCCCCHHHHHHHHh
Q 035873 173 ICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 173 ivG~~nvGKStlin~l~ 189 (275)
|+|++|+||||+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~ 17 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLS 17 (238)
T ss_dssp -EESTTSSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 58999999999999987
No 350
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.58 E-value=3e-05 Score=63.31 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=49.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCccccc-----CCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQP-----YAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCS 240 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~-----~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~ 240 (275)
.++|++.|.--||||||+-+....++.-.. ..|.++.. ..++ .++.+|||+|... +....
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~-----n~ed~ra~L~IWDTAGQEr--------fHALG 79 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKV-----NVEDCRADLHIWDTAGQER--------FHALG 79 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccc-----ccccceeeeeeeeccchHh--------hhccC
Confidence 468999999999999998777655443211 12333333 3333 3678999999532 11111
Q ss_pred HHHHHhccceeEEEEeCCCC
Q 035873 241 ITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~~ 260 (275)
-..++.. +.+|+|+|.++.
T Consensus 80 PIYYRgS-nGalLVyDITDr 98 (218)
T KOG0088|consen 80 PIYYRGS-NGALLVYDITDR 98 (218)
T ss_pred ceEEeCC-CceEEEEeccch
Confidence 1233443 889999999965
No 351
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00025 Score=68.24 Aligned_cols=85 Identities=26% Similarity=0.251 Sum_probs=62.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC---------------cccccCCCcccceEEEEEEecC---eeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD---------------VDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~---------------~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~ 228 (275)
+...+++|.+---|||||..+|.... .++...-+.|.-.+...+.|.+ .-+.+|||||..|.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 34578888888999999999886221 1234455778888888888876 66789999999886
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
..+. + ..+.-+ |.+|+|+||+++
T Consensus 139 s~EV----s----Rslaac-~G~lLvVDA~qG 161 (650)
T KOG0462|consen 139 SGEV----S----RSLAAC-DGALLVVDASQG 161 (650)
T ss_pred ccee----h----ehhhhc-CceEEEEEcCcC
Confidence 6443 2 234445 899999999954
No 352
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.54 E-value=0.00025 Score=67.11 Aligned_cols=85 Identities=25% Similarity=0.270 Sum_probs=59.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc------ccc----------cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV------DVQ----------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~------~v~----------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 231 (275)
...|++|.+---|||||+.+|..+.- +++ ..-+.|.-..--.+.|++.++.++||||..|...+
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 34789999999999999999974321 111 11244444444557899999999999998876643
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
.|+ .+.-. |.+|+++||++.+
T Consensus 85 ----VER----vl~MV-DgvlLlVDA~EGp 105 (603)
T COG1217 85 ----VER----VLSMV-DGVLLLVDASEGP 105 (603)
T ss_pred ----hhh----hhhhc-ceEEEEEEcccCC
Confidence 332 24444 9999999999765
No 353
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00024 Score=70.48 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC------------------eeEEEEeCCCCCC
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY------------------LRYQVIDTPGILD 227 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~------------------~~~~liDTpG~~~ 227 (275)
-+.+.+++.|+--+|||-|+..|.+.++.-+.+.+.|..+-...+...+ -.+++|||||.-.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 3678999999999999999999999999888887777665433332221 2578999999321
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.. +. .+.-..++|..|+|+|...+......+-+++|+
T Consensus 553 Ft-nl--------RsrgsslC~~aIlvvdImhGlepqtiESi~lLR 589 (1064)
T KOG1144|consen 553 FT-NL--------RSRGSSLCDLAILVVDIMHGLEPQTIESINLLR 589 (1064)
T ss_pred hh-hh--------hhccccccceEEEEeehhccCCcchhHHHHHHH
Confidence 10 11 222344569999999999777666666777765
No 354
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00082 Score=60.55 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=33.8
Q ss_pred HhhhHHHHHHhhCchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHh
Q 035873 133 ALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 133 ~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
++.|..+..+.-.+.-..+ .++.+..+.+...+..+|++-|.||+|||||+.+|.
T Consensus 18 AlARaITlvEs~~~~h~~~--a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 18 ALARAITLVESRRPDHRAL--ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred HHHHHHHHHhcCCchhhhH--HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 5556655554433321111 122233333444567799999999999999999986
No 355
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=8.4e-05 Score=69.34 Aligned_cols=94 Identities=30% Similarity=0.315 Sum_probs=65.2
Q ss_pred CceeEeeccCCCCHHHHHHHHh---cC-----Ccc----------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKIT---RA-----DVD----------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~---~~-----~~~----------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
...|+++..-.+||||...++. |+ ++. +...-+.|.+.....+.|.|.++.+|||||-.+..
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 4578999999999999988875 22 111 12224556666677788999999999999988754
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCCCCC---CHHHHHH
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGSCGY---SIAQQAA 270 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~---~~~~q~~ 270 (275)
.+ .| ..++-+ |.++.|+|+|..... .++.|..
T Consensus 117 le----ve----rclrvl-dgavav~dasagve~qtltvwrqad 151 (753)
T KOG0464|consen 117 LE----VE----RCLRVL-DGAVAVFDASAGVEAQTLTVWRQAD 151 (753)
T ss_pred EE----HH----HHHHHh-cCeEEEEeccCCcccceeeeehhcc
Confidence 33 33 345555 899999999954322 4555543
No 356
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0011 Score=65.32 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV 193 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~ 193 (275)
...+|++.|.+++||||++|++...++
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~kl 134 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKL 134 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhh
Confidence 345899999999999999999985443
No 357
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.42 E-value=8.5e-05 Score=59.04 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=49.8
Q ss_pred EeeccCCCCHHHHHHHHhcCCcccccCC-CcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 172 LICWYPNVGKSSFMNKITRADVDVQPYA-FTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 172 ~ivG~~nvGKStlin~l~~~~~~v~~~~-~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
+++|-.++|||.|+-++........++- +...+.....+..++. ++|+|||+|.. .+...+...++..
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqe--------rfrsvt~ayyrda- 71 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE--------RFRSVTHAYYRDA- 71 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchH--------HHhhhhHhhhccc-
Confidence 3679999999998866653333222221 1122333334455554 57999999943 2322334555555
Q ss_pred ceeEEEEeCCCCCC
Q 035873 249 SAVLFFLDISGSCG 262 (275)
Q Consensus 249 d~il~viD~s~~~g 262 (275)
|++|++.|.+....
T Consensus 72 ~allllydiankas 85 (192)
T KOG0083|consen 72 DALLLLYDIANKAS 85 (192)
T ss_pred ceeeeeeecccchh
Confidence 99999999986544
No 358
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.37 E-value=0.00049 Score=61.38 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=59.3
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC--cccccC-CCcccceEEEEEEe---cCeeEEEEeCCCCCCCCC-CchhHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD--VDVQPY-AFTTKSLFVGHTDY---KYLRYQVIDTPGILDRPF-EDHNIIEM 238 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~--~~v~~~-~~tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~-~~~~~~e~ 238 (275)
.....|+|+|...+|||.|+|.|.+.. ..+++. ..+|.+........ ++..+.++||.|+.+-.. ........
T Consensus 19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~~~~d~~i 98 (260)
T PF02263_consen 19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSDEKYDAKI 98 (260)
T ss_dssp SBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCCCHHCHHH
T ss_pred CCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccccccCcccccHHH
Confidence 345688999999999999999999753 234442 23565544333221 235789999999987322 22112222
Q ss_pred HHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 239 CSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 239 ~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.++..|-. ..+|| .....+..+..++++++-
T Consensus 99 f~Ls~LLS--S~~Iy--N~~~~i~~~~l~~L~~~~ 129 (260)
T PF02263_consen 99 FALSMLLS--SVLIY--NSMGNIDEDDLDQLELFT 129 (260)
T ss_dssp HHHHHHH---SEEEE--EECSSSSHHHHHCCHHHH
T ss_pred HHHHHHHh--Cceee--CCCCccchhHHHHHHHHH
Confidence 23333322 34444 444446666666666553
No 359
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.34 E-value=0.00073 Score=70.67 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=54.1
Q ss_pred CCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC------------------eeEEEEeCCCCCCCCCCchhHHHHHH
Q 035873 179 VGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY------------------LRYQVIDTPGILDRPFEDHNIIEMCS 240 (275)
Q Consensus 179 vGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~------------------~~~~liDTpG~~~~~~~~~~~~e~~~ 240 (275)
++||||+.+|.+.++.-....+.|++.-...+.++. ..+.+|||||... +....
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~--------F~~lr 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA--------FTSLR 543 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH--------HHHHH
Confidence 469999999999988766666777776555554431 1379999999321 11111
Q ss_pred HHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.... ..+|++++|+|+++.......+-+.++
T Consensus 544 ~~g~-~~aDivlLVVDa~~Gi~~qT~e~I~~l 574 (1049)
T PRK14845 544 KRGG-SLADLAVLVVDINEGFKPQTIEAINIL 574 (1049)
T ss_pred Hhhc-ccCCEEEEEEECcccCCHhHHHHHHHH
Confidence 1222 335999999999975444444434433
No 360
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.23 E-value=0.00041 Score=60.31 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=57.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccceEEEEEEecC-eeEEEEeCCCCCCCCCCchhHHHHH----HH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDHNIIEMC----SI 241 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~e~~----~~ 241 (275)
..+|++.|.+|+||||+=..+.... ..-...++.|.+...+|+.+-| .-+.+||..|.. ..+|-. --
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------~fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------EFMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------HHHHHHHhhcch
Confidence 3478999999999999866655332 2234556778999999987755 567899999943 122211 11
Q ss_pred HHHHhccceeEEEEeCCC
Q 035873 242 TALAHLRSAVLFFLDISG 259 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~ 259 (275)
...+.. ++++||+|++.
T Consensus 77 ~iF~nV-~vli~vFDves 93 (295)
T KOG3886|consen 77 NIFRNV-QVLIYVFDVES 93 (295)
T ss_pred hhheeh-eeeeeeeeccc
Confidence 233444 89999999984
No 361
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00072 Score=65.50 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhc---------------------CCc----------ccccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITR---------------------ADV----------DVQPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~---------------------~~~----------~v~~~~~tT~~~~~~~~~~~~~~ 216 (275)
....+++|...+|||||+..|.- ... .....-+.|.+....+++-....
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~ 256 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKI 256 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCcee
Confidence 45789999999999999999861 100 01122355666666666666678
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
+.++|+||.-+.-. |. +.-... +|+.++|+|++-
T Consensus 257 ~tliDaPGhkdFi~---nm-----i~g~sq-aD~avLvvd~s~ 290 (603)
T KOG0458|consen 257 VTLIDAPGHKDFIP---NM-----ISGASQ-ADVAVLVVDAST 290 (603)
T ss_pred EEEecCCCccccch---hh-----hccccc-cceEEEEEECCc
Confidence 99999999443322 21 122223 489999999983
No 362
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.14 E-value=0.0002 Score=59.80 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=56.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEE--ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTD--YKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+++++|--+|||||+|.+....-..-...-....+.....+. .++.+.++|||+|.. +..-.+...+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqe--------EfDaItkAyy 90 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQE--------EFDAITKAYY 90 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccch--------hHHHHHHHHh
Confidence 345889999999999999999873222111111111111122222 234567899999953 2322333444
Q ss_pred HhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
+.. .+-++|+..++ .++.+.-.++.++
T Consensus 91 rga-qa~vLVFSTTD--r~SFea~~~w~~k 117 (246)
T KOG4252|consen 91 RGA-QASVLVFSTTD--RYSFEATLEWYNK 117 (246)
T ss_pred ccc-cceEEEEeccc--HHHHHHHHHHHHH
Confidence 444 77788888774 4666666666654
No 363
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.10 E-value=0.0017 Score=47.41 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=46.1
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccce
Q 035873 171 ILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSA 250 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (275)
+++.|.+|+||||+...|...-.. ..+ ....+ + ++.++|+||..+..... ....+. .+|.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~-------~v~~~--~--d~iivD~~~~~~~~~~~-------~~~~~~-~~~~ 61 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGK-------RVLLI--D--DYVLIDTPPGLGLLVLL-------CLLALL-AADL 61 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCC-------eEEEE--C--CEEEEeCCCCccchhhh-------hhhhhh-hCCE
Confidence 677899999999998887632211 010 01111 1 88999999977533110 122333 3489
Q ss_pred eEEEEeCCCCCCCCHH
Q 035873 251 VLFFLDISGSCGYSIA 266 (275)
Q Consensus 251 il~viD~s~~~g~~~~ 266 (275)
++++++++..+-....
T Consensus 62 vi~v~~~~~~~~~~~~ 77 (99)
T cd01983 62 VIIVTTPEALAVLGAR 77 (99)
T ss_pred EEEecCCchhhHHHHH
Confidence 9999999865544443
No 364
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.00094 Score=59.56 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=43.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe----cC--eeEEEEeCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY----KY--LRYQVIDTPGILDRP 229 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~----~~--~~~~liDTpG~~~~~ 229 (275)
.+.|+.||.+|.||||||..|.+.+....+.+.+-........++ .+ ..+.++||.|+.|.-
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQi 109 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQI 109 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccccccc
Confidence 468999999999999999999988776555444433333332222 22 357899999998753
No 365
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.07 E-value=0.0016 Score=59.91 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhc
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....+++++||++++||||+...|.+
T Consensus 100 ~~~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 100 SSYGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred hccCCEEEEECCCccchHHHHHHHHH
Confidence 34678999999999999999988863
No 366
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.00071 Score=57.34 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEE
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVG 208 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~ 208 (275)
.+..|+++|++|||||||+++|....+. ....+.||+.+..+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~g 45 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPG 45 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCC
Confidence 3457899999999999999999876543 33456788776544
No 367
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0017 Score=63.95 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCC-ccc-----c--cCCCc---------ccceEEEEEEe---cCe--eEEEEeC
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRAD-VDV-----Q--PYAFT---------TKSLFVGHTDY---KYL--RYQVIDT 222 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~-~~v-----~--~~~~t---------T~~~~~~~~~~---~~~--~~~liDT 222 (275)
......++++|+-..|||+|+..|.+.. +.. + .|+-+ +...+...+.. ++. -++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3456789999999999999999997543 211 1 12111 11111111111 222 3689999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 223 PGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 223 pG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
||-.+-. .+ +...++.. |++++|+|+.++.-.+.+.-++
T Consensus 205 PGHVnF~----DE----~ta~l~~s-DgvVlvvDv~EGVmlntEr~ik 243 (971)
T KOG0468|consen 205 PGHVNFS----DE----TTASLRLS-DGVVLVVDVAEGVMLNTERIIK 243 (971)
T ss_pred CCcccch----HH----HHHHhhhc-ceEEEEEEcccCceeeHHHHHH
Confidence 9976422 22 24566666 9999999999887777766554
No 368
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.00 E-value=0.0095 Score=57.73 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCCCCceeEeeccCCCCHHHHHHHHhcCC
Q 035873 164 IDPNTRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 164 ~~~~~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.....|+|++||--.+||||.+..++.+.
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqAR 332 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQAR 332 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhc
Confidence 34577899999999999999999887443
No 369
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.85 E-value=0.00096 Score=55.14 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..++++|++|+|||||+++|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 370
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.82 E-value=0.0013 Score=52.90 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=33.6
Q ss_pred eEeeccCCCCHHHHHHHHhcCCcc--cccCCCcccceEEEEEEecCeeEEEEeCC
Q 035873 171 ILICWYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTP 223 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~~~~--v~~~~~tT~~~~~~~~~~~~~~~~liDTp 223 (275)
|+++|++|+|||||++.|.+.... ....+.||+.+..+. .++.++.++|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~ 54 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKE 54 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHH
Confidence 688999999999999999876322 233445666654443 244556666543
No 371
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.78 E-value=0.0014 Score=54.85 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
..+.++++|++|+|||||+.+|.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHH
Confidence 34589999999999999999886
No 372
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.76 E-value=0.0013 Score=53.76 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=52.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|-+.+|||||+-+..+...................+...+. .+-+||..|.-+. .+.+ -.++.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~----~n~l----Piac~ 91 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF----INML----PIACK 91 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhh----hccC----ceeec
Confidence 458999999999999999888776654222112223334444555544 4678999994311 0100 11222
Q ss_pred hccceeEEEEeCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCG 262 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g 262 (275)
.. -+|||++|.+.++.
T Consensus 92 ds-vaIlFmFDLt~r~T 107 (205)
T KOG1673|consen 92 DS-VAILFMFDLTRRST 107 (205)
T ss_pred Cc-EEEEEEEecCchHH
Confidence 22 47999999997654
No 373
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.0032 Score=59.96 Aligned_cols=81 Identities=25% Similarity=0.268 Sum_probs=54.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc---------------ccccCCCcccceEEEEEEecC-----eeEEEEeCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADV---------------DVQPYAFTTKSLFVGHTDYKY-----LRYQVIDTPGILDRP 229 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~---------------~v~~~~~tT~~~~~~~~~~~~-----~~~~liDTpG~~~~~ 229 (275)
...+|.+---|||||-.+|..... .+...-+.|.-.+...+.|.. ..+.+|||||..|..
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 567777778899999998863221 123445667777777776643 246789999988765
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
-+. -..|+.+ ...|+|+|||.
T Consensus 91 YEV--------SRSLAAC-EGalLvVDAsQ 111 (603)
T COG0481 91 YEV--------SRSLAAC-EGALLVVDASQ 111 (603)
T ss_pred EEe--------hhhHhhC-CCcEEEEECcc
Confidence 432 1234545 67899999993
No 374
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.68 E-value=0.00073 Score=57.61 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=51.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-Cee--EEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLR--YQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~--~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..++++||..++|||+|+...+..... ..|-.|--+-....+..+ +.. +.+|||+|..+-. .+. --.+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp-~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD-----rlR---plsY 74 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFP-EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD-----RLR---PLSY 74 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCc-ccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc-----ccc---ccCC
Confidence 457999999999999999887754332 222222224444555664 554 5789999975421 110 1123
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
.+. |++|.+++.+++.
T Consensus 75 ~~t-dvfl~cfsv~~p~ 90 (198)
T KOG0393|consen 75 PQT-DVFLLCFSVVSPE 90 (198)
T ss_pred CCC-CEEEEEEEcCChh
Confidence 333 8888888887553
No 375
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.66 E-value=0.0019 Score=55.42 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=26.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKS 204 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~ 204 (275)
.+..|+++|++|+|||||++.|...... ....+.||+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 4557888999999999999999754322 2333445543
No 376
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.61 E-value=0.0017 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.1
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
+|+|.|.|||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 377
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.59 E-value=0.0021 Score=65.45 Aligned_cols=78 Identities=24% Similarity=0.267 Sum_probs=52.1
Q ss_pred eccCCCCHHHHHHHHhcCCccccc---CCCcccceEEEEEEec---CeeEEEEeCCCCCCCC-CCchhHHHHH-HHHHHH
Q 035873 174 CWYPNVGKSSFMNKITRADVDVQP---YAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRP-FEDHNIIEMC-SITALA 245 (275)
Q Consensus 174 vG~~nvGKStlin~l~~~~~~v~~---~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~-~~~~~~~e~~-~~~~l~ 245 (275)
+|.-++|||||+|.|.|....+.+ ...||++....+.... ...+.++|+=|..-+- .++.. +|++ +.=+++
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~la 79 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFALA 79 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHHH
Confidence 488999999999999999876533 3468888866665432 3578999998875432 23333 7755 344444
Q ss_pred hccceeEE
Q 035873 246 HLRSAVLF 253 (275)
Q Consensus 246 ~~~d~il~ 253 (275)
-. |++|+
T Consensus 80 ~s-~~~ii 86 (742)
T PF05879_consen 80 VS-DVLII 86 (742)
T ss_pred hh-hheee
Confidence 43 66544
No 378
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.59 E-value=0.0026 Score=52.89 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=32.6
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG 224 (275)
.|+++|++|+|||||++.|.+.... ....+.+|+.+..+. ..+.++.++++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHH
Confidence 6899999999999999999875433 222233454443332 2334445554433
No 379
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0017 Score=54.77 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=34.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEE
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVI 220 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~li 220 (275)
...+++.|+.||||||++.+|....-.--+...||+.+..|. .+|.++.++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gE--v~G~dY~Fv 54 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGE--VDGVDYFFV 54 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCC--cCCceeEeC
Confidence 346889999999999999999866622223345777776654 345555443
No 380
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.51 E-value=0.003 Score=53.66 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
...|+++|.+|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3479999999999999999998764
No 381
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.50 E-value=0.0022 Score=50.75 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 378999999999999999998764
No 382
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.015 Score=57.97 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
..+.+++||+||||||||-..++
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHH
Confidence 34689999999999999998886
No 383
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.49 E-value=0.018 Score=53.95 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=19.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
....+++++|..++|||||..-|+
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHH
Confidence 456789999999999999876555
No 384
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.47 E-value=0.0084 Score=58.37 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=49.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-c-cccC-CCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-D-VQPY-AFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~-v~~~-~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
...+|+++|-.|+||||||-+|.+... . +.+. |-.|.- .-++-+.....++||+--.+ .+.. -...
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~----~~~~----l~~E 76 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSD----DRLC----LRKE 76 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccc----hhHH----HHHH
Confidence 456899999999999999999987653 1 2221 111211 11112234578999985322 1111 1344
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |+|.+|.+.+++
T Consensus 77 irkA-~vi~lvyavd~~ 92 (625)
T KOG1707|consen 77 IRKA-DVICLVYAVDDE 92 (625)
T ss_pred Hhhc-CEEEEEEecCCh
Confidence 5555 999999987764
No 385
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0063 Score=55.46 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=51.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc--------------------ccccCCCccc---ceEEEEEEec------CeeEE
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV--------------------DVQPYAFTTK---SLFVGHTDYK------YLRYQ 218 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~--------------------~v~~~~~tT~---~~~~~~~~~~------~~~~~ 218 (275)
...|+++|+---|||||..+|+|-.. .+...|.+-. ......+... -+++-
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 45899999999999999999996311 0000111100 0000011111 14788
Q ss_pred EEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCC
Q 035873 219 VIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 219 liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~ 263 (275)
++|.|| .+.-|.+...=+.+-|+.|+|++++++|-+
T Consensus 90 fVDaPG---------He~LMATMLsGAAlMDgAlLvIaANEpcPQ 125 (415)
T COG5257 90 FVDAPG---------HETLMATMLSGAALMDGALLVIAANEPCPQ 125 (415)
T ss_pred EeeCCc---------hHHHHHHHhcchhhhcceEEEEecCCCCCC
Confidence 999999 333333332223334999999999999965
No 386
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.44 E-value=0.0048 Score=59.63 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=50.8
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc-c---ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD-V---QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMC 239 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~-v---~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~ 239 (275)
-...+|++.|.-.+|||||+|.|.|.+.. + .....||+++...+..--...+.++|.-|-.-+-..+....|++
T Consensus 35 l~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDGrERGEDqdFErk 112 (772)
T KOG2203|consen 35 LSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDGRERGEDQDFERK 112 (772)
T ss_pred cceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccCCcccccccccHHHH
Confidence 45678999999999999999999998764 2 22356888877666532233478899888643322222556654
No 387
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.39 E-value=0.016 Score=43.69 Aligned_cols=66 Identities=27% Similarity=0.216 Sum_probs=40.0
Q ss_pred eEeec-cCCCCHHHHHHHHhcC------CcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 171 ILICW-YPNVGKSSFMNKITRA------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 171 i~ivG-~~nvGKStlin~l~~~------~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
|++.| ..|+||||+...|... ++.+-+... ..++.++|||+.... ....+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~-------------~~d~viiD~p~~~~~----------~~~~~ 58 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP-------------QYDYIIIDTPPSLGL----------LTRNA 58 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCC-------------CCCEEEEeCcCCCCH----------HHHHH
Confidence 55666 5799999987666421 121111110 157899999996531 12244
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
+... |.++.+++++..
T Consensus 59 l~~a-d~viv~~~~~~~ 74 (104)
T cd02042 59 LAAA-DLVLIPVQPSPL 74 (104)
T ss_pred HHHC-CEEEEeccCCHH
Confidence 5554 999999998743
No 388
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.37 E-value=0.0039 Score=43.19 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=18.3
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
..++.|.+|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998875
No 389
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.013 Score=54.16 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=54.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC------------------------cc---------cccCCCcccceEEEEEEecC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD------------------------VD---------VQPYAFTTKSLFVGHTDYKY 214 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~------------------------~~---------v~~~~~tT~~~~~~~~~~~~ 214 (275)
..+++-+|.--=||||||.+|.... +. .....+.|.+.....+.-+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 4478888988889999999997211 00 01224567777777666667
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
+++.+.||||-.+-. +....=+..+|+.++++|+-.
T Consensus 86 RkFIiADTPGHeQYT---------RNMaTGASTadlAIlLVDAR~ 121 (431)
T COG2895 86 RKFIIADTPGHEQYT---------RNMATGASTADLAILLVDARK 121 (431)
T ss_pred ceEEEecCCcHHHHh---------hhhhcccccccEEEEEEecch
Confidence 889999999943211 112223444599999999963
No 390
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.30 E-value=0.0043 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
..+..|++.|.+|+|||||++.|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998874
No 391
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.0033 Score=55.32 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
-|+++|++|+|||||+|.++|-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 392
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.023 Score=52.30 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=49.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc--c--ccc---CCCcccceEEEEEEe---------cCeeEEEEeCCCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV--D--VQP---YAFTTKSLFVGHTDY---------KYLRYQVIDTPGILDRPFE 231 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~--~--v~~---~~~tT~~~~~~~~~~---------~~~~~~liDTpG~~~~~~~ 231 (275)
...+++.|.-.+|||||..+|+.-.. . ..+ .-+.|.+.--..+.. +..++.++|+||-.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 36799999999999999999973221 1 111 112222221111111 12356899999932
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
. -.+++..-++.-|+.++|+|+...
T Consensus 82 --s--LIRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 82 --S--LIRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred --H--HHHHHHhhhheeeeeeEEEehhcc
Confidence 1 123344445556999999999854
No 393
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.22 E-value=0.017 Score=46.26 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=41.5
Q ss_pred eeccCCCCHHHHHHHHh------cCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 173 ICWYPNVGKSSFMNKIT------RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 173 ivG~~nvGKStlin~l~------~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.-|.+|+||||+--.+. |..+.+-+........ +.++.++|||+.... ....++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~--------~yd~VIiD~p~~~~~----------~~~~~l~~ 66 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL--------DYDYIIIDTGAGISD----------NVLDFFLA 66 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------CCCEEEEECCCCCCH----------HHHHHHHh
Confidence 44778999999865554 2233322222111111 057899999985421 12355666
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
+ |.+++|++++..
T Consensus 67 a-D~vviv~~~~~~ 79 (139)
T cd02038 67 A-DEVIVVTTPEPT 79 (139)
T ss_pred C-CeEEEEcCCChh
Confidence 6 999999998744
No 394
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.20 E-value=0.01 Score=63.46 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=52.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccC--CCcccc-eEEEEEEe-cCeeEEEEeCCCCCCCCC----CchhHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPY--AFTTKS-LFVGHTDY-KYLRYQVIDTPGILDRPF----EDHNIIEMC 239 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~--~~tT~~-~~~~~~~~-~~~~~~liDTpG~~~~~~----~~~~~~e~~ 239 (275)
.|=.+++|.||+||||+++.- |-....... ...+.+ ....++.| -..+-.++||+|..-... .+..++...
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHH
Confidence 456799999999999999865 444322211 000100 00112222 234667999999654322 233344322
Q ss_pred HHHHHHhc-----cceeEEEEeCCCCCCCCH
Q 035873 240 SITALAHL-----RSAVLFFLDISGSCGYSI 265 (275)
Q Consensus 240 ~~~~l~~~-----~d~il~viD~s~~~g~~~ 265 (275)
+..|+.. -|+||+++|+++-...+.
T Consensus 190 -L~~L~k~R~r~plnGvil~vs~~~Ll~~~~ 219 (1169)
T TIGR03348 190 -LGLLRKHRRRQPLNGVVVTVSLADLLTADP 219 (1169)
T ss_pred -HHHHHHhCCCCCCCeEEEEEEHHHHhCCCH
Confidence 2333322 289999999986544433
No 395
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.18 E-value=0.0041 Score=49.43 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=18.3
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
.|+++|.||+||||+...|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999987
No 396
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.16 E-value=0.0042 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+.+.|+++|++|+|||||++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999999873
No 397
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.15 E-value=0.015 Score=44.52 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=45.7
Q ss_pred eccCCCCHHHHHHHHhc-------CCcccc-cCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 174 CWYPNVGKSSFMNKITR-------ADVDVQ-PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 174 vG~~nvGKStlin~l~~-------~~~~v~-~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
-+..|+||||+.-.|.. .++..- -.|..+ .++.++|||+.... .....+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~----------~~~~~l~ 63 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDE----------VSLAALD 63 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCH----------HHHHHHH
Confidence 35689999997655542 222211 111111 17899999996531 1234555
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.. |.+++|++++...-..+...++.++
T Consensus 64 ~a-D~vlvvv~~~~~s~~~~~~~~~~l~ 90 (106)
T cd03111 64 QA-DRVFLVTQQDLPSIRNAKRLLELLR 90 (106)
T ss_pred Hc-CeEEEEecCChHHHHHHHHHHHHHH
Confidence 54 9999999998655455555555443
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.14 E-value=0.019 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....++++|++||||||++.+|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 399
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.10 E-value=0.005 Score=54.78 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=20.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...++++|++|+|||||+++|+|
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999986
No 400
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.08 E-value=0.0088 Score=52.30 Aligned_cols=19 Identities=26% Similarity=0.460 Sum_probs=16.1
Q ss_pred eEeeccCCCCHHHHHHHHh
Q 035873 171 ILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~ 189 (275)
-++||+||+||||..+..+
T Consensus 5 qvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred eEEEcCCCCCccchhhhHH
Confidence 5788999999999877654
No 401
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.08 E-value=0.028 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..+++.|.+|+|||||+..+.+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4799999999999999999973
No 402
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.04 E-value=0.012 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..-+++++|.+|+|||||++-|+|.
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCc
Confidence 3448999999999999999999864
No 403
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.03 E-value=0.0058 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999754
No 404
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.02 E-value=0.0056 Score=51.46 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
..++++|.+|+|||||++.|+|-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999999753
No 405
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.00 E-value=0.006 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999864
No 406
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.99 E-value=0.0059 Score=42.95 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.|++.|.+|+||||+.+.|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999999999744
No 407
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0061 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999764
No 408
>PTZ00099 rab6; Provisional
Probab=95.97 E-value=0.025 Score=47.31 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=28.4
Q ss_pred EEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 208 GHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 208 ~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
..+..++ .++++|||||.... .......++.+ |++|+|+|++++.
T Consensus 20 ~~~~~~~~~v~l~iwDt~G~e~~--------~~~~~~~~~~a-d~~ilv~D~t~~~ 66 (176)
T PTZ00099 20 KTLYLDEGPVRLQLWDTAGQERF--------RSLIPSYIRDS-AAAIVVYDITNRQ 66 (176)
T ss_pred EEEEECCEEEEEEEEECCChHHh--------hhccHHHhCCC-cEEEEEEECCCHH
Confidence 3344444 46789999996421 11112345554 9999999999654
No 409
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.97 E-value=0.0056 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.9
Q ss_pred eEeeccCCCCHHHHHHHHhcC
Q 035873 171 ILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~ 191 (275)
|+|.|.|||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999754
No 410
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.0074 Score=59.04 Aligned_cols=94 Identities=22% Similarity=0.234 Sum_probs=65.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC---cc---------------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD---VD---------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~---~~---------------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
...|+++-+--+||||+.+++.-.. .. ....-+.|.+.-...+.|.+.++.+|||||..|..
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 3468888889999999999876211 11 12234566666667788988999999999998866
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCCCC---CCHHHHHH
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGSCG---YSIAQQAA 270 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g---~~~~~q~~ 270 (275)
.+. ..+|+-+ |..+.|+|+..... ..++.|++
T Consensus 119 ~EV--------eRALrVl-DGaVlvl~aV~GVqsQt~tV~rQ~~ 153 (721)
T KOG0465|consen 119 FEV--------ERALRVL-DGAVLVLDAVAGVESQTETVWRQMK 153 (721)
T ss_pred EEe--------hhhhhhc-cCeEEEEEcccceehhhHHHHHHHH
Confidence 543 3467777 88888889875432 24566654
No 411
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.97 E-value=0.0065 Score=51.11 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999754
No 412
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.96 E-value=0.0064 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 413
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.029 Score=53.04 Aligned_cols=82 Identities=20% Similarity=0.044 Sum_probs=58.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.|+..|.---|||||+.+++|.... -...-++|.+........++..+.++|.||..+. + .+.+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-------i----~~miag 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-------I----SNLLAG 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-------H----HHHHhh
Confidence 4677888888999999999987643 2333578888777776667778899999996531 1 222333
Q ss_pred --ccceeEEEEeCCCCCC
Q 035873 247 --LRSAVLFFLDISGSCG 262 (275)
Q Consensus 247 --~~d~il~viD~s~~~g 262 (275)
..|..++|||+.+..-
T Consensus 71 ~~~~d~alLvV~~deGl~ 88 (447)
T COG3276 71 LGGIDYALLVVAADEGLM 88 (447)
T ss_pred hcCCceEEEEEeCccCcc
Confidence 3489999999976543
No 414
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.95 E-value=0.0057 Score=52.38 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 415
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.0058 Score=52.67 Aligned_cols=24 Identities=13% Similarity=0.038 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 416
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.94 E-value=0.006 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+....|+++|.+|+|||||.+.|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 417
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.91 E-value=0.0061 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999854
No 418
>PRK07261 topology modulation protein; Provisional
Probab=95.91 E-value=0.0061 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.2
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
+|+++|.||+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 419
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0058 Score=52.29 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=21.1
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC
Q 035873 170 TILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.++++|.+|+|||||++.|+|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999753
No 420
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.89 E-value=0.007 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
..+..|+|.|.+|+|||||.+.|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999874
No 421
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.88 E-value=0.0095 Score=58.39 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=22.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-+|++||.+|+|||||++.|+|..
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999999876
No 422
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.87 E-value=0.0073 Score=51.46 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999853
No 423
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.87 E-value=0.0076 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 424
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.87 E-value=0.0061 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||+|.|.+-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999753
No 425
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.0075 Score=51.65 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999853
No 426
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.87 E-value=0.0019 Score=56.63 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.-.+++||++|+||||++|.++|-
T Consensus 30 Gei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 30 GEIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred CeEEEEECCCCCCceeeeeeeccc
Confidence 347899999999999999999964
No 427
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.87 E-value=0.0068 Score=48.96 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 368999999999999999998764
No 428
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.86 E-value=0.089 Score=47.80 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCC----------------CCC
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL----------------DRP 229 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~----------------~~~ 229 (275)
.+.+.++++|.+|.|||+++.++...++...+... . ...+..+.+|.-. -++
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-~-----------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-E-----------RIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-c-----------cccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 46678999999999999999999987764332111 0 1245566665532 122
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCC
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDIS 258 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s 258 (275)
.......+.+.+..++.. .+=++|||=-
T Consensus 127 ~~~~~~~~~~~~~llr~~-~vrmLIIDE~ 154 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRL-GVRMLIIDEF 154 (302)
T ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEeech
Confidence 222333444555666766 7777888853
No 429
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0067 Score=52.29 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 430
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.021 Score=52.64 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV 193 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~ 193 (275)
.+..+|+++|.-|+|||||++.|++...
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans~ 213 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANSL 213 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccCh
Confidence 4566899999999999999999987643
No 431
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.008 Score=51.37 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
No 432
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.82 E-value=0.011 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=15.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.....+++.|.+|+|||||++.+.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999876
No 433
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.007 Score=52.61 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999764
No 434
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.81 E-value=0.0086 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..++++|+||+||||++..|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46899999999999999999754
No 435
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.81 E-value=0.007 Score=52.10 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|.|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998764
No 436
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.81 E-value=0.0025 Score=53.50 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=26.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc--cccCCCcccce
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD--VQPYAFTTKSL 205 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~--v~~~~~tT~~~ 205 (275)
..|+++|++|+|||||.++|....+. ....+.||+.+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~ 41 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPP 41 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-G
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCC
Confidence 36889999999999999999765432 23344556544
No 437
>PRK08118 topology modulation protein; Reviewed
Probab=95.81 E-value=0.0073 Score=50.17 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+|+|+|.||+|||||...|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 438
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.81 E-value=0.0078 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.9
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+.|+++|.||+||||+.+.|.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999997
No 439
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.81 E-value=0.037 Score=47.06 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.3
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..+++.|++++|||||+..+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999887
No 440
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.80 E-value=0.0071 Score=52.46 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999753
No 441
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.80 E-value=0.0082 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 442
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.79 E-value=0.0081 Score=51.97 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3478999999999999999999864
No 443
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.78 E-value=0.0085 Score=51.54 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 444
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.78 E-value=0.0084 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999753
No 445
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.77 E-value=0.0086 Score=51.22 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999864
No 446
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.77 E-value=0.0076 Score=52.47 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||+++++|--
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999743
No 447
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.77 E-value=0.0086 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999754
No 448
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.77 E-value=0.0073 Score=48.78 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.4
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
+.|+++|+.|+|||||+..|.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li 21 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLI 21 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999988875
No 449
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.76 E-value=0.0078 Score=51.03 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=22.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 450
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.76 E-value=0.04 Score=45.28 Aligned_cols=45 Identities=27% Similarity=0.272 Sum_probs=28.0
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 216 RYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 216 ~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
++.|+||||-... ....++... |.+++|++++..+-..+..-++.
T Consensus 64 d~viiD~p~~~~~----------~~~~~l~~a-d~viiv~~~~~~s~~~~~~~~~~ 108 (179)
T cd02036 64 DYILIDSPAGIER----------GFITAIAPA-DEALLVTTPEISSLRDADRVKGL 108 (179)
T ss_pred CEEEEECCCCCcH----------HHHHHHHhC-CcEEEEeCCCcchHHHHHHHHHH
Confidence 7999999985431 123445444 89999999886544444443333
No 451
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.76 E-value=0.0086 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=22.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999864
No 452
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.75 E-value=0.0089 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 453
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.0094 Score=49.72 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999764
No 454
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.74 E-value=0.0079 Score=50.59 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999765
No 455
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.73 E-value=0.0087 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.-.++++|..|+|||||+|-+.|-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 347899999999999999999864
No 456
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.73 E-value=0.016 Score=52.50 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+...+.++|.||+|||||++++.+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988764
No 457
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.0081 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-..+++|++|+|||||+..|+|.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCc
Confidence 36899999999999999999974
No 458
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.72 E-value=0.0077 Score=50.08 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=19.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.++++|++||||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 459
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.71 E-value=0.0095 Score=50.96 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999863
No 460
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.71 E-value=0.008 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999986
No 461
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.71 E-value=0.0092 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999863
No 462
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.70 E-value=0.0079 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999975
No 463
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.70 E-value=0.0099 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=22.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999764
No 464
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.082 Score=43.79 Aligned_cols=22 Identities=36% Similarity=0.535 Sum_probs=19.8
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
..+|++-|.|||||||++.++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHH
Confidence 4589999999999999998886
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.68 E-value=0.0063 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=17.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
+|+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999854
No 466
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.67 E-value=0.0087 Score=51.40 Aligned_cols=24 Identities=8% Similarity=-0.016 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999864
No 467
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.01 Score=49.70 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.65 E-value=0.0093 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
..++++|.+|+|||||+++|.+.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999998653
No 469
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.64 E-value=0.01 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999863
No 470
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.01 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 368999999999999999999764
No 471
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.01 Score=51.71 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999754
No 472
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.64 E-value=0.01 Score=52.59 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 473
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.63 E-value=0.0091 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999864
No 474
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.01 Score=52.63 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=20.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..++++|++|+|||||+..+.|
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999998
No 475
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.63 E-value=0.01 Score=51.67 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999753
No 476
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.62 E-value=0.011 Score=50.25 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999764
No 477
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.62 E-value=0.0092 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 478
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.62 E-value=0.01 Score=51.52 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|.|-.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999864
No 479
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.62 E-value=0.011 Score=50.47 Aligned_cols=25 Identities=16% Similarity=-0.052 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999754
No 480
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.011 Score=51.75 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 481
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.61 E-value=0.011 Score=50.37 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=22.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999764
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.61 E-value=0.008 Score=50.91 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.9
Q ss_pred eEeeccCCCCHHHHHHHHhcC
Q 035873 171 ILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~ 191 (275)
|+++|.+|+|||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999753
No 483
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.0095 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 484
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.59 E-value=0.011 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999999864
No 485
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.59 E-value=0.031 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
..|+++|.+|+||||++|+|.+.-
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998543
No 486
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.59 E-value=0.011 Score=51.94 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999764
No 487
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.0094 Score=52.73 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999999853
No 488
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.011 Score=51.99 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999999864
No 489
>PF05729 NACHT: NACHT domain
Probab=95.57 E-value=0.022 Score=45.93 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.7
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.++|.|.||+||||++..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 578999999999999998873
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.57 E-value=0.011 Score=49.56 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...++++|++|+|||||++.+.+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34789999999999999999864
No 491
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.0096 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999975
No 492
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.57 E-value=0.0098 Score=51.56 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999764
No 493
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.011 Score=51.60 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=22.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 494
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57 E-value=0.012 Score=50.40 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=22.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 495
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.57 E-value=0.011 Score=53.73 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|--
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999753
No 496
>PRK10908 cell division protein FtsE; Provisional
Probab=95.56 E-value=0.012 Score=50.85 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999764
No 497
>PRK08233 hypothetical protein; Provisional
Probab=95.55 E-value=0.011 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..|++.|.||+||||+.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999753
No 498
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.55 E-value=0.01 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999763
No 499
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.01 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999875
No 500
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.011 Score=50.35 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=21.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 478999999999999999999864
Done!