Query 035873
Match_columns 275
No_of_seqs 330 out of 2826
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e87_A Hypothetical protein PH 100.0 6.2E-46 2.1E-50 342.9 26.2 273 2-274 1-273 (357)
2 4a9a_A Ribosome-interacting GT 99.8 7.1E-19 2.4E-23 162.8 12.1 93 166-260 70-162 (376)
3 2qu8_A Putative nucleolar GTP- 99.7 5.5E-17 1.9E-21 139.3 13.6 118 156-273 17-134 (228)
4 2qtf_A Protein HFLX, GTP-bindi 99.7 2.8E-16 9.6E-21 145.1 13.4 177 77-260 85-270 (364)
5 1wf3_A GTP-binding protein; GT 99.6 1.9E-15 6.7E-20 136.0 12.4 93 168-262 7-101 (301)
6 2gj8_A MNME, tRNA modification 99.6 6E-15 2E-19 121.2 13.6 98 168-266 4-102 (172)
7 3iev_A GTP-binding protein ERA 99.6 2.9E-15 9.9E-20 135.1 12.4 98 166-264 8-109 (308)
8 1mky_A Probable GTP-binding pr 99.6 2.5E-15 8.5E-20 141.8 11.6 92 169-261 2-95 (439)
9 3lxw_A GTPase IMAP family memb 99.6 4.2E-15 1.4E-19 129.9 9.2 94 166-259 19-117 (247)
10 3iby_A Ferrous iron transport 99.6 1.2E-14 3.9E-19 127.9 11.7 91 169-259 2-95 (256)
11 3lxx_A GTPase IMAP family memb 99.5 5.4E-14 1.8E-18 121.6 13.4 93 167-259 28-124 (239)
12 2hjg_A GTP-binding protein ENG 99.5 6E-15 2.1E-19 139.1 7.2 93 169-262 4-97 (436)
13 3i8s_A Ferrous iron transport 99.5 3.8E-14 1.3E-18 125.7 11.9 92 168-259 3-97 (274)
14 2wji_A Ferrous iron transport 99.5 8.6E-14 2.9E-18 113.1 12.9 89 169-259 4-93 (165)
15 1lnz_A SPO0B-associated GTP-bi 99.5 8.3E-15 2.8E-19 134.1 6.9 164 89-264 61-253 (342)
16 1xzp_A Probable tRNA modificat 99.5 2.2E-14 7.7E-19 136.8 10.0 94 168-262 243-338 (482)
17 4dcu_A GTP-binding protein ENG 99.5 1.3E-14 4.5E-19 137.5 7.7 104 168-272 23-127 (456)
18 2dyk_A GTP-binding protein; GT 99.5 8.1E-14 2.8E-18 111.6 10.9 91 169-261 2-93 (161)
19 3a1s_A Iron(II) transport prot 99.5 9.9E-14 3.4E-18 122.0 12.0 90 168-259 5-95 (258)
20 1jal_A YCHF protein; nucleotid 99.5 8E-15 2.7E-19 135.0 5.0 90 169-260 3-109 (363)
21 2xtp_A GTPase IMAP family memb 99.5 1.2E-13 4.1E-18 120.8 12.3 92 167-259 21-117 (260)
22 3gee_A MNME, tRNA modification 99.5 3.4E-14 1.1E-18 135.5 8.3 91 168-263 233-328 (476)
23 3k53_A Ferrous iron transport 99.5 1.2E-13 3.9E-18 122.0 11.1 90 168-259 3-93 (271)
24 4dhe_A Probable GTP-binding pr 99.5 1.6E-13 5.5E-18 116.4 11.2 107 166-272 27-140 (223)
25 2ohf_A Protein OLA1, GTP-bindi 99.5 2.7E-14 9.2E-19 132.8 6.8 92 167-260 21-129 (396)
26 1wxq_A GTP-binding protein; st 99.5 3.4E-14 1.2E-18 132.6 6.9 89 170-260 2-114 (397)
27 3b1v_A Ferrous iron uptake tra 99.5 1.2E-13 4.2E-18 122.4 10.2 89 168-259 3-92 (272)
28 2wjg_A FEOB, ferrous iron tran 99.5 3.6E-13 1.2E-17 111.0 12.2 91 167-259 6-97 (188)
29 3def_A T7I23.11 protein; chlor 99.5 1.6E-13 5.6E-18 120.5 10.3 93 167-260 35-129 (262)
30 1h65_A Chloroplast outer envel 99.4 2.9E-13 9.8E-18 119.4 10.5 93 167-260 38-132 (270)
31 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 3E-13 1E-17 125.8 10.7 91 167-259 19-127 (392)
32 2hjg_A GTP-binding protein ENG 99.4 1.2E-13 4.1E-18 130.1 8.0 95 166-261 173-271 (436)
33 2dby_A GTP-binding protein; GD 99.4 1.8E-13 6E-18 126.4 8.3 89 169-259 2-111 (368)
34 1svi_A GTP-binding protein YSX 99.4 1.5E-12 5E-17 107.9 11.9 93 167-262 22-120 (195)
35 3geh_A MNME, tRNA modification 99.4 1.1E-13 3.7E-18 131.5 5.3 90 168-262 224-318 (462)
36 2lkc_A Translation initiation 99.4 4.1E-13 1.4E-17 109.3 8.0 88 165-261 5-92 (178)
37 1ega_A Protein (GTP-binding pr 99.4 8.9E-14 3E-18 125.0 3.6 88 168-259 8-100 (301)
38 1jwy_B Dynamin A GTPase domain 99.4 4.4E-12 1.5E-16 113.6 14.4 107 151-258 7-178 (315)
39 4dcu_A GTP-binding protein ENG 99.4 8.6E-13 2.9E-17 125.0 9.4 96 166-262 193-292 (456)
40 2aka_B Dynamin-1; fusion prote 99.4 7.4E-12 2.5E-16 111.1 14.3 112 151-262 8-177 (299)
41 1mky_A Probable GTP-binding pr 99.4 1.4E-12 4.9E-17 122.9 10.1 95 166-261 178-277 (439)
42 3tw8_B RAS-related protein RAB 99.4 1.1E-12 3.7E-17 106.8 7.9 85 167-260 8-94 (181)
43 3clv_A RAB5 protein, putative; 99.4 1.4E-12 4.9E-17 107.7 8.8 85 167-260 6-129 (208)
44 3pqc_A Probable GTP-binding pr 99.4 9.3E-12 3.2E-16 102.6 13.1 104 166-272 21-129 (195)
45 3tkl_A RAS-related protein RAB 99.3 1.3E-12 4.6E-17 108.0 7.5 85 167-260 15-101 (196)
46 3cph_A RAS-related protein SEC 99.3 3.2E-12 1.1E-16 107.3 9.4 85 167-260 19-105 (213)
47 2hxs_A RAB-26, RAS-related pro 99.3 2.3E-12 7.9E-17 104.9 8.3 85 167-260 5-92 (178)
48 2bme_A RAB4A, RAS-related prot 99.3 1.6E-12 5.5E-17 106.7 7.4 85 167-260 9-95 (186)
49 1z2a_A RAS-related protein RAB 99.3 3.9E-12 1.3E-16 102.2 9.5 85 167-260 4-90 (168)
50 1zd9_A ADP-ribosylation factor 99.3 5.3E-12 1.8E-16 104.5 10.1 84 166-260 20-103 (188)
51 1ek0_A Protein (GTP-binding pr 99.3 3.4E-12 1.2E-16 102.6 8.7 83 169-260 4-88 (170)
52 2il1_A RAB12; G-protein, GDP, 99.3 3.6E-12 1.2E-16 106.0 8.8 86 166-260 24-111 (192)
53 1puj_A YLQF, conserved hypothe 99.3 1.7E-12 5.8E-17 115.7 7.2 64 166-232 118-182 (282)
54 1g16_A RAS-related protein SEC 99.3 3E-12 1E-16 103.1 8.0 84 168-260 3-88 (170)
55 2y8e_A RAB-protein 6, GH09086P 99.3 2.9E-12 9.9E-17 104.1 7.6 84 168-260 14-99 (179)
56 1z06_A RAS-related protein RAB 99.3 5.5E-12 1.9E-16 104.3 9.3 85 167-260 19-106 (189)
57 2fn4_A P23, RAS-related protei 99.3 1.1E-11 3.8E-16 100.7 11.0 85 166-260 7-93 (181)
58 1wms_A RAB-9, RAB9, RAS-relate 99.3 3.2E-12 1.1E-16 103.9 7.8 85 167-260 6-92 (177)
59 1zj6_A ADP-ribosylation factor 99.3 7E-12 2.4E-16 103.4 9.9 82 167-260 15-96 (187)
60 1r8s_A ADP-ribosylation factor 99.3 6.3E-12 2.2E-16 100.9 9.3 79 170-260 2-80 (164)
61 1u8z_A RAS-related protein RAL 99.3 9.7E-12 3.3E-16 99.6 10.2 83 168-260 4-88 (168)
62 1ksh_A ARF-like protein 2; sma 99.3 5E-12 1.7E-16 104.0 8.7 82 167-260 17-98 (186)
63 1fzq_A ADP-ribosylation factor 99.3 1.1E-11 3.6E-16 102.3 10.7 83 166-260 14-96 (181)
64 1z0f_A RAB14, member RAS oncog 99.3 6.8E-12 2.3E-16 101.8 9.3 85 167-260 14-100 (179)
65 2bcg_Y Protein YP2, GTP-bindin 99.3 6.1E-12 2.1E-16 105.4 9.2 85 167-260 7-93 (206)
66 2efe_B Small GTP-binding prote 99.3 4.9E-12 1.7E-16 103.2 8.3 85 167-260 11-97 (181)
67 2f7s_A C25KG, RAS-related prot 99.3 6.1E-12 2.1E-16 106.2 9.2 96 167-273 24-131 (217)
68 2qpt_A EH domain-containing pr 99.3 6.3E-12 2.2E-16 121.8 10.3 103 167-270 64-212 (550)
69 2g6b_A RAS-related protein RAB 99.3 4.5E-12 1.5E-16 103.3 7.4 85 167-260 9-96 (180)
70 4dsu_A GTPase KRAS, isoform 2B 99.3 1.2E-11 4.1E-16 101.4 9.9 83 168-260 4-88 (189)
71 2hup_A RAS-related protein RAB 99.3 6.9E-12 2.4E-16 105.2 8.6 85 167-260 28-114 (201)
72 4bas_A ADP-ribosylation factor 99.3 4.4E-12 1.5E-16 105.2 7.3 85 166-260 15-99 (199)
73 3r7w_A Gtpase1, GTP-binding pr 99.3 1.1E-11 3.8E-16 111.5 10.5 89 168-261 3-94 (307)
74 1f5n_A Interferon-induced guan 99.3 3.8E-12 1.3E-16 123.9 7.9 103 165-272 35-145 (592)
75 3cbq_A GTP-binding protein REM 99.3 9.2E-12 3.1E-16 104.2 9.2 87 166-260 21-109 (195)
76 2bov_A RAla, RAS-related prote 99.3 1.3E-11 4.5E-16 102.8 10.1 84 167-260 13-98 (206)
77 3bc1_A RAS-related protein RAB 99.3 6.3E-12 2.2E-16 103.3 8.1 85 167-260 10-106 (195)
78 3t5d_A Septin-7; GTP-binding p 99.3 1.5E-11 5.3E-16 108.5 11.0 94 167-260 7-128 (274)
79 1kao_A RAP2A; GTP-binding prot 99.3 1.5E-11 5.2E-16 98.3 9.9 83 168-260 3-87 (167)
80 1upt_A ARL1, ADP-ribosylation 99.3 7.4E-12 2.5E-16 101.0 8.1 83 167-261 6-88 (171)
81 2h17_A ADP-ribosylation factor 99.3 4.3E-12 1.5E-16 104.3 6.8 82 166-260 19-101 (181)
82 2o52_A RAS-related protein RAB 99.3 3.4E-12 1.2E-16 106.9 6.2 85 167-260 24-110 (200)
83 1z0j_A RAB-22, RAS-related pro 99.3 8.6E-12 2.9E-16 100.4 8.3 84 168-260 6-91 (170)
84 2a9k_A RAS-related protein RAL 99.3 1.5E-11 5.1E-16 100.5 9.9 84 167-260 17-102 (187)
85 2a5j_A RAS-related protein RAB 99.3 1.1E-11 3.8E-16 102.7 9.0 85 167-260 20-106 (191)
86 1r2q_A RAS-related protein RAB 99.3 9.8E-12 3.3E-16 99.9 8.3 84 168-260 6-91 (170)
87 1z08_A RAS-related protein RAB 99.3 4.1E-12 1.4E-16 102.5 6.0 85 167-260 5-91 (170)
88 1ky3_A GTP-binding protein YPT 99.3 3E-12 1E-16 104.2 5.3 85 167-260 7-94 (182)
89 2fu5_C RAS-related protein RAB 99.3 1.2E-12 4.1E-17 107.3 2.8 84 168-260 8-93 (183)
90 2b6h_A ADP-ribosylation factor 99.3 2.1E-11 7.3E-16 101.5 10.5 83 166-260 27-109 (192)
91 2yhs_A FTSY, cell division pro 99.3 1.7E-11 5.8E-16 116.6 11.0 199 46-274 198-436 (503)
92 2h57_A ADP-ribosylation factor 99.3 6.1E-12 2.1E-16 104.1 7.1 85 166-260 19-103 (190)
93 3q85_A GTP-binding protein REM 99.3 1.2E-11 4.2E-16 99.6 8.7 84 169-260 3-88 (169)
94 2ew1_A RAS-related protein RAB 99.3 6.9E-12 2.4E-16 105.7 7.4 85 167-260 25-111 (201)
95 1moz_A ARL1, ADP-ribosylation 99.3 6.8E-12 2.3E-16 102.6 7.1 82 167-260 17-98 (183)
96 2p5s_A RAS and EF-hand domain 99.3 1.2E-11 4.1E-16 103.2 8.7 85 167-260 27-113 (199)
97 1zbd_A Rabphilin-3A; G protein 99.3 1.5E-11 5.1E-16 102.6 9.2 85 167-260 7-93 (203)
98 3t5g_A GTP-binding protein RHE 99.3 1.7E-11 5.7E-16 100.3 9.1 84 167-260 5-90 (181)
99 2oil_A CATX-8, RAS-related pro 99.3 1.8E-11 6.1E-16 101.4 9.4 85 167-260 24-110 (193)
100 1m2o_B GTP-binding protein SAR 99.3 1.4E-11 5E-16 102.3 8.8 82 167-260 22-103 (190)
101 1vg8_A RAS-related protein RAB 99.2 6.7E-12 2.3E-16 104.8 6.4 85 167-260 7-93 (207)
102 3cpj_B GTP-binding protein YPT 99.2 1.2E-11 4.1E-16 105.3 8.1 85 167-260 12-98 (223)
103 1x3s_A RAS-related protein RAB 99.2 1.7E-11 5.8E-16 101.1 8.6 84 168-260 15-100 (195)
104 1f6b_A SAR1; gtpases, N-termin 99.2 1.5E-11 5.1E-16 103.0 8.1 82 167-260 24-105 (198)
105 2gf9_A RAS-related protein RAB 99.2 2.4E-11 8.3E-16 100.3 8.7 85 167-260 21-107 (189)
106 2iwr_A Centaurin gamma 1; ANK 99.2 3.7E-11 1.3E-15 97.9 9.7 79 167-261 6-86 (178)
107 2q3h_A RAS homolog gene family 99.2 2E-11 7E-16 101.6 8.3 85 166-260 18-104 (201)
108 2x77_A ADP-ribosylation factor 99.2 2E-11 6.9E-16 100.7 8.1 83 167-261 21-103 (189)
109 1udx_A The GTP-binding protein 99.2 2.6E-11 9E-16 113.6 9.8 158 89-258 60-246 (416)
110 2x2e_A Dynamin-1; nitration, h 99.2 8.4E-11 2.9E-15 107.7 12.9 97 166-262 29-182 (353)
111 3l0i_B RAS-related protein RAB 99.2 2.3E-12 8E-17 107.6 2.0 85 167-260 32-118 (199)
112 2atv_A RERG, RAS-like estrogen 99.2 5.8E-11 2E-15 98.7 10.3 83 167-260 27-111 (196)
113 2fg5_A RAB-22B, RAS-related pr 99.2 1.1E-11 3.9E-16 102.8 5.9 83 167-260 22-108 (192)
114 3kkq_A RAS-related protein M-R 99.2 4.8E-11 1.6E-15 97.7 9.6 87 164-260 14-102 (183)
115 1c1y_A RAS-related protein RAP 99.2 3.3E-11 1.1E-15 96.6 8.4 83 168-260 3-87 (167)
116 3t34_A Dynamin-related protein 99.2 1.1E-10 3.9E-15 107.0 12.8 94 165-259 31-184 (360)
117 2nzj_A GTP-binding protein REM 99.2 1.8E-11 6.2E-16 99.1 6.6 84 168-260 4-90 (175)
118 2erx_A GTP-binding protein DI- 99.2 4.8E-11 1.7E-15 95.9 9.0 83 168-260 3-87 (172)
119 3q72_A GTP-binding protein RAD 99.2 2.1E-11 7.1E-16 98.0 6.7 81 168-260 2-85 (166)
120 2fh5_B SR-beta, signal recogni 99.2 6.9E-11 2.4E-15 99.5 10.1 81 167-259 6-90 (214)
121 3con_A GTPase NRAS; structural 99.2 4.5E-11 1.6E-15 98.5 8.6 83 168-260 21-105 (190)
122 2cxx_A Probable GTP-binding pr 99.2 1.2E-10 4E-15 95.6 11.0 86 169-258 2-93 (190)
123 3qq5_A Small GTP-binding prote 99.2 1.5E-11 5.1E-16 115.5 6.2 90 166-257 32-123 (423)
124 3dz8_A RAS-related protein RAB 99.2 1.4E-11 4.9E-16 102.0 5.3 85 167-260 22-108 (191)
125 2ged_A SR-beta, signal recogni 99.2 1.7E-11 5.9E-16 101.3 5.4 81 166-258 46-129 (193)
126 2yc2_C IFT27, small RAB-relate 99.2 8.4E-12 2.9E-16 104.0 3.4 85 167-260 19-109 (208)
127 2j1l_A RHO-related GTP-binding 99.2 4.2E-11 1.4E-15 101.4 7.7 84 167-260 33-118 (214)
128 2ce2_X GTPase HRAS; signaling 99.2 8.7E-11 3E-15 93.6 8.8 82 169-260 4-87 (166)
129 3oes_A GTPase rhebl1; small GT 99.2 4.2E-11 1.4E-15 100.1 7.2 84 167-260 23-108 (201)
130 2j0v_A RAC-like GTP-binding pr 99.2 5.1E-11 1.7E-15 100.2 7.7 84 167-260 8-93 (212)
131 1zu4_A FTSY; GTPase, signal re 99.2 2.2E-10 7.4E-15 103.8 12.3 202 47-274 7-252 (320)
132 1mh1_A RAC1; GTP-binding, GTPa 99.2 4.7E-11 1.6E-15 97.5 7.0 83 168-260 5-89 (186)
133 2gf0_A GTP-binding protein DI- 99.2 2.2E-10 7.4E-15 94.8 11.0 84 167-260 7-92 (199)
134 2atx_A Small GTP binding prote 99.2 5.8E-11 2E-15 98.3 7.5 84 167-260 17-102 (194)
135 3c5c_A RAS-like protein 12; GD 99.1 1.7E-10 5.9E-15 95.4 10.3 83 167-260 20-104 (187)
136 3ihw_A Centg3; RAS, centaurin, 99.1 1.2E-10 4E-15 96.4 9.0 79 166-260 18-98 (184)
137 3lvq_E ARF-GAP with SH3 domain 99.1 4.1E-11 1.4E-15 114.3 6.7 82 167-260 321-402 (497)
138 3o47_A ADP-ribosylation factor 99.1 9.3E-11 3.2E-15 106.5 8.5 84 167-262 164-247 (329)
139 4djt_A GTP-binding nuclear pro 99.1 4.8E-11 1.6E-15 100.8 6.1 85 167-260 10-97 (218)
140 3reg_A RHO-like small GTPase; 99.1 5.7E-11 2E-15 98.5 6.4 84 167-260 22-107 (194)
141 1pui_A ENGB, probable GTP-bind 99.1 2.8E-10 9.5E-15 95.3 10.4 92 167-261 25-122 (210)
142 3llu_A RAS-related GTP-binding 99.1 8.8E-11 3E-15 97.8 6.9 88 166-260 18-108 (196)
143 2f9l_A RAB11B, member RAS onco 99.1 2E-10 6.7E-15 95.9 9.0 84 168-260 5-90 (199)
144 3ec1_A YQEH GTPase; atnos1, at 99.1 2.1E-11 7.1E-16 112.6 3.1 85 169-258 163-256 (369)
145 4gzl_A RAS-related C3 botulinu 99.1 1.2E-10 3.9E-15 97.9 7.4 85 166-260 28-114 (204)
146 2gco_A H9, RHO-related GTP-bin 99.1 1.5E-10 5E-15 96.8 7.8 87 164-260 21-109 (201)
147 3h2y_A GTPase family protein; 99.1 3.1E-11 1.1E-15 111.4 3.9 86 169-258 161-255 (368)
148 2fv8_A H6, RHO-related GTP-bin 99.1 2E-10 6.9E-15 96.4 8.6 84 167-260 24-109 (207)
149 1nrj_B SR-beta, signal recogni 99.1 2E-10 7E-15 96.9 8.5 78 166-258 10-93 (218)
150 3j2k_7 ERF3, eukaryotic polype 99.1 5.4E-10 1.8E-14 105.4 12.1 86 167-261 16-132 (439)
151 3gj0_A GTP-binding nuclear pro 99.1 4.9E-11 1.7E-15 101.1 4.5 86 166-260 13-100 (221)
152 3zvr_A Dynamin-1; hydrolase, D 99.1 1.6E-09 5.6E-14 108.0 16.1 99 166-265 49-205 (772)
153 3bwd_D RAC-like GTP-binding pr 99.1 3.9E-11 1.3E-15 97.8 3.4 84 167-260 7-92 (182)
154 1wb1_A Translation elongation 99.1 2.1E-10 7.1E-15 109.4 8.9 95 168-271 19-120 (482)
155 3izq_1 HBS1P, elongation facto 99.1 1.5E-10 5E-15 113.5 7.7 85 166-259 165-280 (611)
156 2j37_W Signal recognition part 99.1 2.5E-10 8.6E-15 109.2 8.8 103 167-274 100-238 (504)
157 3p26_A Elongation factor 1 alp 99.1 2.9E-10 9.9E-15 108.4 9.2 85 167-260 32-147 (483)
158 3tr5_A RF-3, peptide chain rel 99.1 9.3E-11 3.2E-15 113.0 5.6 94 168-270 13-128 (528)
159 1vma_A Cell division protein F 99.1 1.1E-10 3.9E-15 105.0 5.5 186 46-273 18-246 (306)
160 3t1o_A Gliding protein MGLA; G 99.0 8.1E-11 2.8E-15 96.9 4.0 85 167-260 13-110 (198)
161 3q3j_B RHO-related GTP-binding 99.0 1.6E-10 5.6E-15 97.9 5.7 84 167-260 26-111 (214)
162 1m7b_A RND3/RHOE small GTP-bin 99.0 3.6E-10 1.2E-14 92.9 7.5 84 167-260 6-91 (184)
163 4dkx_A RAS-related protein RAB 99.0 2.5E-10 8.7E-15 97.6 6.7 84 168-260 13-98 (216)
164 1oix_A RAS-related protein RAB 99.0 1.4E-09 4.9E-14 90.3 10.9 84 168-260 29-114 (191)
165 3izy_P Translation initiation 99.0 1.9E-11 6.6E-16 117.8 -0.7 96 167-271 3-99 (537)
166 1gwn_A RHO-related GTP-binding 99.0 4.3E-10 1.5E-14 94.8 7.4 84 167-260 27-112 (205)
167 2www_A Methylmalonic aciduria 99.0 2.2E-10 7.4E-15 105.0 5.9 25 166-190 72-96 (349)
168 3b9q_A Chloroplast SRP recepto 99.0 3.1E-09 1E-13 95.5 13.3 200 47-273 3-243 (302)
169 2cjw_A GTP-binding protein GEM 99.0 1.2E-09 4.2E-14 90.9 10.0 86 168-261 6-94 (192)
170 3th5_A RAS-related C3 botulinu 98.6 2.9E-11 9.9E-16 101.2 0.0 85 167-261 29-115 (204)
171 2j69_A Bacterial dynamin-like 99.0 5.7E-10 2E-14 110.9 9.1 91 167-263 68-216 (695)
172 2c78_A Elongation factor TU-A; 99.0 5.6E-10 1.9E-14 104.0 8.2 96 167-271 10-122 (405)
173 3dm5_A SRP54, signal recogniti 99.0 8.4E-10 2.9E-14 103.9 9.1 103 167-274 99-237 (443)
174 1zun_B Sulfate adenylate trans 99.0 1.2E-09 4.1E-14 102.7 10.2 86 167-261 23-141 (434)
175 2g3y_A GTP-binding protein GEM 99.0 1.3E-09 4.5E-14 92.8 9.2 86 167-260 36-124 (211)
176 2wkq_A NPH1-1, RAS-related C3 99.0 4.1E-10 1.4E-14 100.7 6.3 84 167-260 154-239 (332)
177 1zo1_I IF2, translation initia 99.0 7.4E-11 2.5E-15 112.9 1.4 97 166-271 2-98 (501)
178 2zej_A Dardarin, leucine-rich 99.0 8E-10 2.7E-14 91.0 7.5 83 169-260 3-92 (184)
179 2xex_A Elongation factor G; GT 99.0 5.7E-10 1.9E-14 110.9 7.5 95 167-270 9-121 (693)
180 3cnl_A YLQF, putative uncharac 99.0 5.7E-10 1.9E-14 98.3 5.9 59 169-230 100-159 (262)
181 2elf_A Protein translation elo 98.9 1.1E-09 3.8E-14 101.0 7.4 85 170-272 23-107 (370)
182 2h5e_A Peptide chain release f 98.9 1.4E-09 4.6E-14 105.0 8.1 85 168-261 13-119 (529)
183 1d2e_A Elongation factor TU (E 98.9 1.8E-09 6.1E-14 100.4 8.4 94 169-271 4-113 (397)
184 1kk1_A EIF2gamma; initiation o 98.9 4.6E-09 1.6E-13 97.9 11.1 86 167-261 9-120 (410)
185 2og2_A Putative signal recogni 98.9 1.2E-08 4.2E-13 93.6 13.4 195 47-273 60-300 (359)
186 1jny_A EF-1-alpha, elongation 98.9 1.1E-09 3.6E-14 103.1 6.0 84 168-260 6-120 (435)
187 2v3c_C SRP54, signal recogniti 98.9 7.3E-10 2.5E-14 104.3 4.7 99 168-273 99-234 (432)
188 1dar_A EF-G, elongation factor 98.9 3E-09 1E-13 105.6 9.2 95 167-270 11-123 (691)
189 3kl4_A SRP54, signal recogniti 98.9 1.1E-09 3.9E-14 102.8 5.9 103 167-274 96-236 (433)
190 3sjy_A Translation initiation 98.9 2.2E-09 7.5E-14 99.9 7.6 86 167-261 7-112 (403)
191 3p32_A Probable GTPase RV1496/ 98.9 3.1E-09 1.1E-13 97.4 8.4 24 166-189 77-100 (355)
192 1rj9_A FTSY, signal recognitio 98.9 1.3E-09 4.3E-14 98.1 5.7 105 167-273 101-244 (304)
193 3dpu_A RAB family protein; roc 98.9 3.9E-09 1.4E-13 101.7 9.0 85 166-259 39-133 (535)
194 3e70_C DPA, signal recognition 98.9 1.1E-09 3.8E-14 99.5 4.0 102 167-273 128-265 (328)
195 1s0u_A EIF-2-gamma, translatio 98.8 9.8E-09 3.3E-13 95.7 10.4 86 167-261 7-118 (408)
196 2p67_A LAO/AO transport system 98.8 7.1E-09 2.4E-13 94.5 8.8 82 166-259 54-181 (341)
197 3mca_A HBS1, elongation factor 98.8 2.4E-10 8.1E-15 111.7 -1.2 84 168-260 177-291 (592)
198 1f60_A Elongation factor EEF1A 98.8 2.3E-09 7.8E-14 101.6 5.4 84 168-260 7-121 (458)
199 2rdo_7 EF-G, elongation factor 98.8 1.9E-08 6.5E-13 100.0 11.6 94 167-269 9-127 (704)
200 1g7s_A Translation initiation 98.8 2.6E-09 9E-14 104.2 4.6 97 167-272 4-118 (594)
201 2xxa_A Signal recognition part 98.8 2E-08 6.8E-13 94.5 10.0 102 167-273 99-237 (433)
202 3cb4_D GTP-binding protein LEP 98.8 1.6E-08 5.3E-13 98.8 9.0 94 168-270 4-117 (599)
203 1r5b_A Eukaryotic peptide chai 98.8 5.4E-09 1.9E-13 99.2 5.6 85 167-260 42-157 (467)
204 2ywe_A GTP-binding protein LEP 98.7 1.4E-08 4.8E-13 99.1 8.2 86 168-262 6-111 (600)
205 2qag_A Septin-2, protein NEDD5 98.7 2.9E-08 1E-12 91.1 9.7 61 168-228 37-108 (361)
206 3q5d_A Atlastin-1; G protein, 98.7 2.5E-08 8.6E-13 94.0 8.6 104 166-274 65-195 (447)
207 1n0u_A EF-2, elongation factor 98.7 1.4E-08 4.9E-13 102.8 7.3 85 168-261 19-135 (842)
208 3avx_A Elongation factor TS, e 98.7 3.2E-08 1.1E-12 102.2 9.5 97 167-272 295-407 (1289)
209 2dy1_A Elongation factor G; tr 98.7 1.1E-07 3.7E-12 94.0 11.5 95 167-270 8-120 (665)
210 1j8m_F SRP54, signal recogniti 98.6 7E-08 2.4E-12 86.4 8.1 101 168-273 98-236 (297)
211 2qm8_A GTPase/ATPase; G protei 98.6 8.3E-08 2.8E-12 87.3 8.5 23 167-189 54-76 (337)
212 3r7w_B Gtpase2, GTP-binding pr 98.6 1.3E-07 4.6E-12 85.6 9.8 84 170-260 1-85 (331)
213 3c5h_A Glucocorticoid receptor 98.6 2.3E-08 7.8E-13 87.2 4.5 27 165-191 16-51 (255)
214 3vqt_A RF-3, peptide chain rel 98.6 8.8E-08 3E-12 92.7 7.6 95 168-271 31-147 (548)
215 2ffh_A Protein (FFH); SRP54, s 98.5 2.3E-07 8E-12 86.9 8.7 102 167-273 97-234 (425)
216 2px0_A Flagellar biosynthesis 98.4 1.7E-07 5.7E-12 83.8 4.0 23 167-189 104-126 (296)
217 3j25_A Tetracycline resistance 98.4 1.6E-07 5.5E-12 92.4 4.0 94 169-271 3-114 (638)
218 2qnr_A Septin-2, protein NEDD5 98.3 1.5E-06 5.1E-11 77.7 8.2 26 167-192 17-42 (301)
219 3sop_A Neuronal-specific septi 98.2 3.3E-06 1.1E-10 74.4 8.2 61 169-229 3-74 (270)
220 2wsm_A Hydrogenase expression/ 98.2 8.7E-07 3E-11 74.5 3.4 24 168-191 30-53 (221)
221 2qag_B Septin-6, protein NEDD5 98.1 6.1E-06 2.1E-10 77.3 9.1 60 169-228 43-108 (427)
222 4fn5_A EF-G 1, elongation fact 98.1 5E-06 1.7E-10 82.7 8.7 88 167-263 12-124 (709)
223 1yrb_A ATP(GTP)binding protein 98.0 1.1E-06 3.6E-11 76.1 1.0 28 167-194 13-45 (262)
224 1ls1_A Signal recognition part 98.0 8.3E-06 2.8E-10 72.7 6.3 102 167-273 97-234 (295)
225 2qag_C Septin-7; cell cycle, c 97.9 1.4E-05 4.9E-10 74.6 6.4 63 166-228 29-101 (418)
226 4ido_A Atlastin-1; GTPase, GTP 97.8 0.0001 3.5E-09 69.3 10.9 104 167-274 66-195 (457)
227 1t9h_A YLOQ, probable GTPase E 97.8 5.9E-06 2E-10 74.2 1.6 57 169-229 174-238 (307)
228 2yv5_A YJEQ protein; hydrolase 97.8 6.1E-05 2.1E-09 67.2 8.1 54 170-227 167-228 (302)
229 2hf9_A Probable hydrogenase ni 97.7 1.7E-05 5.9E-10 66.7 3.0 25 167-191 37-61 (226)
230 3szr_A Interferon-induced GTP- 97.7 0.00014 4.9E-09 70.9 9.9 26 167-192 44-69 (608)
231 1tq4_A IIGP1, interferon-induc 97.6 6.8E-05 2.3E-09 69.9 5.7 58 168-227 69-132 (413)
232 2rcn_A Probable GTPase ENGC; Y 97.5 3.3E-05 1.1E-09 70.7 2.7 57 170-229 217-282 (358)
233 1u0l_A Probable GTPase ENGC; p 97.5 9E-05 3.1E-09 66.0 4.6 57 170-229 171-235 (301)
234 3ney_A 55 kDa erythrocyte memb 97.3 4.6E-05 1.6E-09 64.0 0.7 55 168-224 19-75 (197)
235 1kgd_A CASK, peripheral plasma 97.1 0.00018 6.2E-09 58.8 2.2 38 169-206 6-45 (180)
236 3c8u_A Fructokinase; YP_612366 96.6 0.0014 4.7E-08 54.6 4.1 24 167-190 21-44 (208)
237 1zp6_A Hypothetical protein AT 96.6 0.0012 4E-08 53.8 3.4 24 168-191 9-32 (191)
238 1ye8_A Protein THEP1, hypothet 96.6 0.00093 3.2E-08 54.8 2.7 22 170-191 2-23 (178)
239 1lvg_A Guanylate kinase, GMP k 96.6 0.00089 3E-08 55.6 2.6 22 169-190 5-26 (198)
240 3tau_A Guanylate kinase, GMP k 96.6 0.0015 5E-08 54.6 3.9 26 167-192 7-32 (208)
241 1s96_A Guanylate kinase, GMP k 96.6 0.001 3.4E-08 56.5 2.7 25 168-192 16-40 (219)
242 3tr0_A Guanylate kinase, GMP k 96.5 0.0013 4.4E-08 54.1 3.1 23 169-191 8-30 (205)
243 1znw_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 54.6 3.0 24 169-192 21-44 (207)
244 3a00_A Guanylate kinase, GMP k 96.4 0.0013 4.4E-08 53.8 2.6 23 170-192 3-25 (186)
245 1ex7_A Guanylate kinase; subst 96.4 0.0013 4.4E-08 54.5 2.4 36 170-205 3-40 (186)
246 3tif_A Uncharacterized ABC tra 96.3 0.0023 7.8E-08 54.8 3.5 23 169-191 32-54 (235)
247 2pcj_A ABC transporter, lipopr 96.3 0.0019 6.6E-08 54.8 3.0 24 169-192 31-54 (224)
248 1z6g_A Guanylate kinase; struc 96.3 0.0018 6.3E-08 54.5 2.8 25 168-192 23-47 (218)
249 2onk_A Molybdate/tungstate ABC 96.2 0.0025 8.5E-08 54.8 3.1 23 169-191 25-47 (240)
250 1g6h_A High-affinity branched- 96.2 0.0025 8.4E-08 55.3 3.0 24 169-192 34-57 (257)
251 3asz_A Uridine kinase; cytidin 96.1 0.0026 8.8E-08 52.7 2.9 24 168-191 6-29 (211)
252 1b0u_A Histidine permease; ABC 96.1 0.003 1E-07 55.0 3.5 24 169-192 33-56 (262)
253 2j41_A Guanylate kinase; GMP, 96.1 0.0029 9.8E-08 52.0 3.1 25 168-192 6-30 (207)
254 3gfo_A Cobalt import ATP-bindi 96.1 0.0027 9.1E-08 55.8 3.0 24 169-192 35-58 (275)
255 1sgw_A Putative ABC transporte 96.1 0.0026 8.9E-08 53.8 2.8 24 169-192 36-59 (214)
256 2cbz_A Multidrug resistance-as 96.1 0.0033 1.1E-07 53.9 3.5 24 169-192 32-55 (237)
257 4g1u_C Hemin import ATP-bindin 96.1 0.0028 9.4E-08 55.4 3.0 23 169-191 38-60 (266)
258 1ji0_A ABC transporter; ATP bi 96.1 0.003 1E-07 54.2 3.0 24 169-192 33-56 (240)
259 2pze_A Cystic fibrosis transme 96.1 0.003 1E-07 53.8 3.0 23 169-191 35-57 (229)
260 2bbw_A Adenylate kinase 4, AK4 96.1 0.0034 1.2E-07 53.5 3.4 22 168-189 27-48 (246)
261 4gp7_A Metallophosphoesterase; 96.1 0.0029 1E-07 51.1 2.8 22 168-189 9-30 (171)
262 2olj_A Amino acid ABC transpor 96.1 0.0035 1.2E-07 54.7 3.5 24 169-192 51-74 (263)
263 1mv5_A LMRA, multidrug resista 96.0 0.0035 1.2E-07 53.8 3.4 24 168-191 28-51 (243)
264 4eun_A Thermoresistant glucoki 96.0 0.0032 1.1E-07 52.0 3.0 23 168-190 29-51 (200)
265 2bdt_A BH3686; alpha-beta prot 96.0 0.0029 1E-07 51.5 2.7 21 170-190 4-24 (189)
266 2qi9_C Vitamin B12 import ATP- 96.0 0.0031 1.1E-07 54.5 3.0 24 169-192 27-50 (249)
267 2ff7_A Alpha-hemolysin translo 96.0 0.0032 1.1E-07 54.4 3.0 24 169-192 36-59 (247)
268 1vpl_A ABC transporter, ATP-bi 96.0 0.0037 1.3E-07 54.3 3.5 24 169-192 42-65 (256)
269 1kag_A SKI, shikimate kinase I 96.0 0.003 1E-07 50.5 2.7 22 169-190 5-26 (173)
270 2i3b_A HCR-ntpase, human cance 96.0 0.0027 9.4E-08 52.5 2.5 21 170-190 3-23 (189)
271 1htw_A HI0065; nucleotide-bind 96.0 0.0035 1.2E-07 50.4 3.0 25 169-193 34-58 (158)
272 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0033 1.1E-07 54.2 3.1 23 169-191 30-52 (250)
273 2ihy_A ABC transporter, ATP-bi 96.0 0.0035 1.2E-07 55.2 3.0 24 169-192 48-71 (279)
274 2zu0_C Probable ATP-dependent 96.0 0.0042 1.4E-07 54.2 3.5 23 169-191 47-69 (267)
275 2ghi_A Transport protein; mult 96.0 0.0042 1.4E-07 54.0 3.5 23 169-191 47-69 (260)
276 3b85_A Phosphate starvation-in 95.9 0.0026 9.1E-08 53.5 2.0 22 170-191 24-45 (208)
277 2nq2_C Hypothetical ABC transp 95.9 0.0036 1.2E-07 54.2 3.0 24 169-192 32-55 (253)
278 2yz2_A Putative ABC transporte 95.9 0.0044 1.5E-07 54.0 3.5 24 169-192 34-57 (266)
279 2ixe_A Antigen peptide transpo 95.9 0.0045 1.5E-07 54.1 3.5 24 169-192 46-69 (271)
280 2qor_A Guanylate kinase; phosp 95.9 0.0042 1.5E-07 51.4 3.1 24 168-191 12-35 (204)
281 1ly1_A Polynucleotide kinase; 95.8 0.0047 1.6E-07 49.4 3.1 22 169-190 3-24 (181)
282 4dzz_A Plasmid partitioning pr 95.8 0.0081 2.8E-07 49.2 4.6 48 215-274 76-123 (206)
283 3lw7_A Adenylate kinase relate 95.8 0.0046 1.6E-07 48.8 2.9 19 170-188 3-21 (179)
284 2eyu_A Twitching motility prot 95.8 0.0047 1.6E-07 53.7 3.1 23 168-190 25-47 (261)
285 1rz3_A Hypothetical protein rb 95.8 0.0099 3.4E-07 49.1 5.0 24 167-190 21-44 (201)
286 1knq_A Gluconate kinase; ALFA/ 95.8 0.0053 1.8E-07 49.2 3.2 23 168-190 8-30 (175)
287 2v9p_A Replication protein E1; 95.7 0.0049 1.7E-07 55.0 3.1 23 168-190 126-148 (305)
288 3aez_A Pantothenate kinase; tr 95.7 0.0049 1.7E-07 55.1 3.1 24 167-190 89-112 (312)
289 3uie_A Adenylyl-sulfate kinase 95.7 0.0054 1.8E-07 50.6 3.1 23 168-190 25-47 (200)
290 3t61_A Gluconokinase; PSI-biol 95.7 0.0056 1.9E-07 50.4 3.1 23 168-190 18-40 (202)
291 3lnc_A Guanylate kinase, GMP k 95.7 0.0037 1.3E-07 52.8 2.0 24 168-191 27-51 (231)
292 3kb2_A SPBC2 prophage-derived 95.7 0.0056 1.9E-07 48.5 3.0 21 170-190 3-23 (173)
293 2pjz_A Hypothetical protein ST 95.7 0.0054 1.8E-07 53.5 3.0 25 168-192 30-54 (263)
294 2bbs_A Cystic fibrosis transme 95.6 0.0068 2.3E-07 53.6 3.5 25 168-192 64-88 (290)
295 2rhm_A Putative kinase; P-loop 95.6 0.0072 2.5E-07 48.9 3.3 22 168-189 5-26 (193)
296 1np6_A Molybdopterin-guanine d 95.6 0.0058 2E-07 49.9 2.7 23 168-190 6-28 (174)
297 2jeo_A Uridine-cytidine kinase 95.6 0.0065 2.2E-07 51.8 3.1 24 167-190 24-47 (245)
298 1qhx_A CPT, protein (chloramph 95.6 0.0072 2.5E-07 48.4 3.1 22 169-190 4-25 (178)
299 1cke_A CK, MSSA, protein (cyti 95.5 0.0063 2.2E-07 50.8 2.9 22 169-190 6-27 (227)
300 1jjv_A Dephospho-COA kinase; P 95.5 0.0072 2.4E-07 49.8 3.2 22 169-190 3-24 (206)
301 4a74_A DNA repair and recombin 95.5 0.0059 2E-07 50.8 2.7 23 168-190 25-47 (231)
302 2if2_A Dephospho-COA kinase; a 95.5 0.0061 2.1E-07 50.1 2.7 21 170-190 3-23 (204)
303 3tui_C Methionine import ATP-b 95.5 0.0082 2.8E-07 54.9 3.5 23 169-191 55-77 (366)
304 3tqc_A Pantothenate kinase; bi 95.4 0.021 7.1E-07 51.3 6.0 24 166-189 90-113 (321)
305 2ehv_A Hypothetical protein PH 95.4 0.0077 2.6E-07 50.8 3.0 21 169-189 31-51 (251)
306 1odf_A YGR205W, hypothetical 3 95.4 0.011 3.8E-07 52.2 4.0 24 166-189 29-52 (290)
307 3nh6_A ATP-binding cassette SU 95.4 0.0058 2E-07 54.5 2.2 24 168-191 80-103 (306)
308 1nks_A Adenylate kinase; therm 95.4 0.0081 2.8E-07 48.4 2.9 21 170-190 3-23 (194)
309 2wwf_A Thymidilate kinase, put 95.4 0.011 3.9E-07 48.5 3.9 23 167-189 9-31 (212)
310 3vaa_A Shikimate kinase, SK; s 95.4 0.0091 3.1E-07 49.1 3.3 23 168-190 25-47 (199)
311 3ec2_A DNA replication protein 95.4 0.0075 2.6E-07 48.6 2.7 23 168-190 38-60 (180)
312 2qt1_A Nicotinamide riboside k 95.4 0.0098 3.4E-07 49.1 3.5 25 167-191 20-44 (207)
313 4e22_A Cytidylate kinase; P-lo 95.3 0.011 3.7E-07 50.8 3.7 23 167-189 26-48 (252)
314 1kht_A Adenylate kinase; phosp 95.3 0.0093 3.2E-07 48.1 3.1 22 169-190 4-25 (192)
315 1sq5_A Pantothenate kinase; P- 95.3 0.0092 3.1E-07 53.0 3.1 24 167-190 79-102 (308)
316 2jaq_A Deoxyguanosine kinase; 95.2 0.0097 3.3E-07 48.5 3.0 21 170-190 2-22 (205)
317 2f1r_A Molybdopterin-guanine d 95.2 0.0044 1.5E-07 50.5 0.8 23 169-191 3-25 (171)
318 3cm0_A Adenylate kinase; ATP-b 95.2 0.0098 3.3E-07 48.0 2.8 21 169-189 5-25 (186)
319 3trf_A Shikimate kinase, SK; a 95.2 0.011 3.8E-07 47.7 3.1 22 168-189 5-26 (185)
320 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.0086 3E-07 53.8 2.7 22 170-191 173-194 (330)
321 1z47_A CYSA, putative ABC-tran 95.2 0.0098 3.4E-07 54.2 3.1 24 169-192 42-65 (355)
322 3fvq_A Fe(3+) IONS import ATP- 95.2 0.011 3.9E-07 53.8 3.5 23 169-191 31-53 (359)
323 1y63_A LMAJ004144AAA protein; 95.2 0.013 4.3E-07 47.7 3.4 25 167-191 9-33 (184)
324 2yyz_A Sugar ABC transporter, 95.1 0.012 4.1E-07 53.6 3.5 23 169-191 30-52 (359)
325 1zcb_A G alpha I/13; GTP-bindi 95.1 0.012 3.9E-07 53.8 3.4 64 202-274 188-259 (362)
326 2gza_A Type IV secretion syste 95.1 0.0094 3.2E-07 54.2 2.8 23 170-192 177-199 (361)
327 2c95_A Adenylate kinase 1; tra 95.1 0.013 4.4E-07 47.5 3.4 22 168-189 9-30 (196)
328 2plr_A DTMP kinase, probable t 95.1 0.012 4.2E-07 48.2 3.2 22 169-190 5-26 (213)
329 4fid_A G protein alpha subunit 95.1 0.023 7.7E-07 51.4 5.1 64 202-274 148-219 (340)
330 2it1_A 362AA long hypothetical 95.1 0.013 4.4E-07 53.5 3.5 24 169-192 30-53 (362)
331 3jvv_A Twitching mobility prot 95.1 0.0096 3.3E-07 54.2 2.7 21 170-190 125-145 (356)
332 1tev_A UMP-CMP kinase; ploop, 95.0 0.013 4.3E-07 47.4 3.1 22 168-189 3-24 (196)
333 2ewv_A Twitching motility prot 95.0 0.011 3.8E-07 54.1 3.0 23 168-190 136-158 (372)
334 3rlf_A Maltose/maltodextrin im 95.0 0.013 4.6E-07 53.8 3.5 24 169-192 30-53 (381)
335 1zak_A Adenylate kinase; ATP:A 95.0 0.013 4.5E-07 48.9 3.3 22 168-189 5-26 (222)
336 1uf9_A TT1252 protein; P-loop, 95.0 0.014 4.8E-07 47.5 3.3 26 166-191 6-31 (203)
337 1g29_1 MALK, maltose transport 95.0 0.012 4E-07 54.0 3.1 24 169-192 30-53 (372)
338 1gvn_B Zeta; postsegregational 95.0 0.026 8.7E-07 49.6 5.2 24 167-190 32-55 (287)
339 1nn5_A Similar to deoxythymidy 95.0 0.015 5.1E-07 47.9 3.4 22 168-189 9-30 (215)
340 3b9p_A CG5977-PA, isoform A; A 95.0 0.098 3.3E-06 45.3 8.9 23 168-190 54-76 (297)
341 1nij_A Hypothetical protein YJ 95.0 0.009 3.1E-07 53.3 2.1 24 168-191 4-27 (318)
342 1ukz_A Uridylate kinase; trans 95.0 0.018 6.2E-07 47.1 3.9 23 167-189 14-36 (203)
343 1lw7_A Transcriptional regulat 94.9 0.0088 3E-07 54.3 2.1 24 168-191 170-193 (365)
344 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 4.7E-07 50.4 3.2 23 168-190 4-26 (260)
345 1v43_A Sugar-binding transport 94.9 0.015 5E-07 53.3 3.5 24 169-192 38-61 (372)
346 2yvu_A Probable adenylyl-sulfa 94.9 0.018 6.2E-07 46.6 3.7 24 167-190 12-35 (186)
347 2v54_A DTMP kinase, thymidylat 94.9 0.015 5.2E-07 47.4 3.3 24 168-191 4-27 (204)
348 2kjq_A DNAA-related protein; s 94.9 0.016 5.3E-07 45.9 3.2 54 168-227 36-96 (149)
349 3iij_A Coilin-interacting nucl 94.9 0.015 5E-07 46.8 3.1 22 168-189 11-32 (180)
350 1zd8_A GTP:AMP phosphotransfer 94.9 0.014 4.8E-07 48.9 3.1 22 168-189 7-28 (227)
351 3ozx_A RNAse L inhibitor; ATP 94.9 0.016 5.4E-07 55.7 3.8 24 168-191 25-48 (538)
352 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.19 6.4E-06 44.7 10.7 23 168-190 45-67 (322)
353 2cdn_A Adenylate kinase; phosp 94.9 0.017 5.8E-07 47.4 3.5 24 167-190 19-42 (201)
354 3h4m_A Proteasome-activating n 94.9 0.065 2.2E-06 46.1 7.3 22 169-190 52-73 (285)
355 2vp4_A Deoxynucleoside kinase; 94.8 0.013 4.3E-07 49.6 2.6 25 167-191 19-43 (230)
356 1aky_A Adenylate kinase; ATP:A 94.8 0.016 5.6E-07 48.2 3.3 22 168-189 4-25 (220)
357 1cip_A Protein (guanine nucleo 94.8 0.0089 3.1E-07 54.3 1.7 65 201-274 179-251 (353)
358 2bwj_A Adenylate kinase 5; pho 94.8 0.016 5.6E-07 47.0 3.1 22 169-190 13-34 (199)
359 1xjc_A MOBB protein homolog; s 94.8 0.017 5.7E-07 47.0 3.1 22 168-189 4-25 (169)
360 3kta_A Chromosome segregation 94.8 0.015 5.2E-07 46.7 2.9 22 169-190 27-48 (182)
361 2x8a_A Nuclear valosin-contain 94.7 0.013 4.3E-07 51.2 2.5 21 171-191 47-67 (274)
362 2oap_1 GSPE-2, type II secreti 94.7 0.014 4.7E-07 55.7 2.9 22 170-191 262-283 (511)
363 3d31_A Sulfate/molybdate ABC t 94.7 0.012 4E-07 53.5 2.2 23 169-191 27-49 (348)
364 1jbk_A CLPB protein; beta barr 94.7 0.038 1.3E-06 43.8 5.1 23 168-190 43-65 (195)
365 1yqt_A RNAse L inhibitor; ATP- 94.7 0.015 5.2E-07 55.8 3.1 25 168-192 47-71 (538)
366 2pez_A Bifunctional 3'-phospho 94.7 0.017 6E-07 46.4 3.0 23 168-190 5-27 (179)
367 2p5t_B PEZT; postsegregational 94.7 0.024 8.1E-07 48.6 4.0 24 167-190 31-54 (253)
368 2iyv_A Shikimate kinase, SK; t 94.6 0.017 5.9E-07 46.5 2.9 21 169-189 3-23 (184)
369 2vli_A Antibiotic resistance p 94.6 0.013 4.5E-07 47.0 2.1 22 168-189 5-26 (183)
370 1qf9_A UMP/CMP kinase, protein 94.6 0.019 6.5E-07 46.2 3.1 21 169-189 7-27 (194)
371 1p9r_A General secretion pathw 94.6 0.015 5E-07 54.1 2.7 22 169-190 168-189 (418)
372 3fb4_A Adenylate kinase; psych 94.6 0.018 6.2E-07 47.7 3.0 20 170-189 2-21 (216)
373 1via_A Shikimate kinase; struc 94.6 0.018 6E-07 46.2 2.8 20 170-189 6-25 (175)
374 1oxx_K GLCV, glucose, ABC tran 94.6 0.011 3.6E-07 53.9 1.5 24 169-192 32-55 (353)
375 1gtv_A TMK, thymidylate kinase 94.6 0.0088 3E-07 49.3 0.9 21 170-190 2-22 (214)
376 3gd7_A Fusion complex of cysti 94.5 0.021 7.1E-07 52.7 3.5 23 169-191 48-70 (390)
377 1ixz_A ATP-dependent metallopr 94.5 0.016 5.5E-07 49.3 2.5 21 171-191 52-72 (254)
378 2pbr_A DTMP kinase, thymidylat 94.5 0.021 7.1E-07 46.1 3.0 21 170-190 2-22 (195)
379 3dl0_A Adenylate kinase; phosp 94.5 0.02 6.9E-07 47.4 3.0 20 170-189 2-21 (216)
380 3ohm_A Guanine nucleotide-bind 94.4 0.032 1.1E-06 50.2 4.3 64 202-274 154-225 (327)
381 1e6c_A Shikimate kinase; phosp 94.4 0.022 7.4E-07 45.2 3.0 21 170-190 4-24 (173)
382 2pt5_A Shikimate kinase, SK; a 94.4 0.022 7.7E-07 45.0 3.0 21 170-190 2-22 (168)
383 2w0m_A SSO2452; RECA, SSPF, un 94.3 0.02 6.8E-07 47.4 2.6 21 169-189 24-44 (235)
384 2z0h_A DTMP kinase, thymidylat 94.3 0.022 7.4E-07 46.2 2.8 21 170-190 2-22 (197)
385 1vht_A Dephospho-COA kinase; s 94.3 0.026 9E-07 46.8 3.4 23 168-190 4-26 (218)
386 1m7g_A Adenylylsulfate kinase; 94.3 0.024 8.1E-07 47.0 3.0 23 168-190 25-47 (211)
387 2npi_A Protein CLP1; CLP1-PCF1 94.3 0.02 6.9E-07 53.9 2.9 24 168-191 138-161 (460)
388 3j16_B RLI1P; ribosome recycli 94.3 0.024 8.4E-07 55.2 3.5 25 168-192 103-127 (608)
389 2obl_A ESCN; ATPase, hydrolase 94.3 0.02 6.8E-07 51.9 2.7 23 169-191 72-94 (347)
390 3tlx_A Adenylate kinase 2; str 94.3 0.027 9.1E-07 48.1 3.3 23 167-189 28-50 (243)
391 1cr0_A DNA primase/helicase; R 94.2 0.024 8.2E-07 49.5 3.1 22 169-190 36-57 (296)
392 1e4v_A Adenylate kinase; trans 94.2 0.024 8.4E-07 47.0 3.0 20 170-189 2-21 (214)
393 1f2t_A RAD50 ABC-ATPase; DNA d 94.2 0.025 8.5E-07 44.7 2.9 22 168-189 23-44 (149)
394 3qf7_A RAD50; ABC-ATPase, ATPa 94.2 0.022 7.6E-07 51.8 2.9 22 168-189 23-44 (365)
395 1azs_C GS-alpha; complex (lyas 94.2 0.031 1.1E-06 51.7 3.9 64 202-274 204-275 (402)
396 2f6r_A COA synthase, bifunctio 94.2 0.033 1.1E-06 48.7 3.8 24 166-189 73-96 (281)
397 3be4_A Adenylate kinase; malar 94.1 0.023 7.7E-07 47.4 2.6 21 169-189 6-26 (217)
398 3bk7_A ABC transporter ATP-bin 94.1 0.028 9.4E-07 54.8 3.5 25 168-192 117-141 (607)
399 1fnn_A CDC6P, cell division co 94.1 0.17 5.7E-06 45.2 8.5 22 169-190 45-66 (389)
400 1ak2_A Adenylate kinase isoenz 94.1 0.032 1.1E-06 47.0 3.4 23 167-189 15-37 (233)
401 4b4t_L 26S protease subunit RP 94.1 0.11 3.8E-06 48.5 7.4 23 168-190 215-237 (437)
402 3b60_A Lipid A export ATP-bind 94.1 0.028 9.7E-07 54.3 3.5 23 169-191 370-392 (582)
403 1iy2_A ATP-dependent metallopr 94.0 0.023 8E-07 49.2 2.5 21 171-191 76-96 (278)
404 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.15 5.1E-06 43.0 7.6 23 168-190 39-61 (262)
405 1in4_A RUVB, holliday junction 94.0 0.028 9.7E-07 50.2 3.1 23 169-191 52-74 (334)
406 3euj_A Chromosome partition pr 94.0 0.024 8.1E-07 53.7 2.7 22 169-190 30-51 (483)
407 3nwj_A ATSK2; P loop, shikimat 93.9 0.027 9.3E-07 48.6 2.8 21 170-190 50-70 (250)
408 3b5x_A Lipid A export ATP-bind 93.9 0.03 1E-06 54.1 3.3 23 169-191 370-392 (582)
409 2xb4_A Adenylate kinase; ATP-b 93.9 0.03 1E-06 46.9 3.0 21 170-190 2-22 (223)
410 2ze6_A Isopentenyl transferase 93.9 0.03 1E-06 48.2 3.0 21 170-190 3-23 (253)
411 2cvh_A DNA repair and recombin 93.9 0.033 1.1E-06 45.9 3.1 22 169-190 21-42 (220)
412 1zuh_A Shikimate kinase; alpha 93.9 0.032 1.1E-06 44.2 3.0 21 169-189 8-28 (168)
413 1yqt_A RNAse L inhibitor; ATP- 93.9 0.029 9.8E-07 53.8 3.1 24 169-192 313-336 (538)
414 3ozx_A RNAse L inhibitor; ATP 93.9 0.029 9.8E-07 53.9 3.0 24 169-192 295-318 (538)
415 2yl4_A ATP-binding cassette SU 93.8 0.027 9.2E-07 54.6 2.7 23 169-191 371-393 (595)
416 3cio_A ETK, tyrosine-protein k 93.7 0.25 8.6E-06 43.4 8.8 50 215-274 214-263 (299)
417 1svm_A Large T antigen; AAA+ f 93.7 0.034 1.2E-06 51.0 3.1 23 168-190 169-191 (377)
418 2p65_A Hypothetical protein PF 93.7 0.057 2E-06 42.7 4.2 23 168-190 43-65 (187)
419 3bk7_A ABC transporter ATP-bin 93.7 0.032 1.1E-06 54.4 3.1 24 169-192 383-406 (607)
420 4b4t_M 26S protease regulatory 93.6 0.13 4.3E-06 48.1 6.9 23 168-190 215-237 (434)
421 1tue_A Replication protein E1; 93.6 0.065 2.2E-06 45.1 4.4 36 150-189 44-79 (212)
422 3qf4_B Uncharacterized ABC tra 93.6 0.032 1.1E-06 54.1 2.8 23 169-191 382-404 (598)
423 3umf_A Adenylate kinase; rossm 93.6 0.043 1.5E-06 46.3 3.3 23 167-189 28-50 (217)
424 4b4t_K 26S protease regulatory 93.6 0.13 4.5E-06 47.9 6.9 22 169-190 207-228 (428)
425 4eaq_A DTMP kinase, thymidylat 93.6 0.044 1.5E-06 46.4 3.4 24 167-190 25-48 (229)
426 1n0w_A DNA repair protein RAD5 93.5 0.034 1.2E-06 46.5 2.6 22 169-190 25-46 (243)
427 1ltq_A Polynucleotide kinase; 93.5 0.039 1.3E-06 48.1 3.1 22 169-190 3-24 (301)
428 4a82_A Cystic fibrosis transme 93.5 0.027 9.3E-07 54.4 2.1 23 169-191 368-390 (578)
429 2dpy_A FLII, flagellum-specifi 93.4 0.035 1.2E-06 51.9 2.7 24 168-191 157-180 (438)
430 1uj2_A Uridine-cytidine kinase 93.4 0.046 1.6E-06 46.6 3.2 24 167-190 21-44 (252)
431 1sxj_E Activator 1 40 kDa subu 93.3 0.063 2.1E-06 47.7 4.2 21 170-190 38-58 (354)
432 1q3t_A Cytidylate kinase; nucl 93.3 0.048 1.6E-06 46.0 3.2 24 167-190 15-38 (236)
433 3j16_B RLI1P; ribosome recycli 93.3 0.041 1.4E-06 53.6 3.0 23 170-192 380-402 (608)
434 3qf4_A ABC transporter, ATP-bi 93.2 0.037 1.3E-06 53.6 2.6 23 169-191 370-392 (587)
435 3bos_A Putative DNA replicatio 93.2 0.056 1.9E-06 44.7 3.4 23 168-190 52-74 (242)
436 3vfd_A Spastin; ATPase, microt 93.2 0.23 7.8E-06 45.1 7.7 23 168-190 148-170 (389)
437 3r20_A Cytidylate kinase; stru 93.1 0.054 1.8E-06 46.3 3.1 22 168-189 9-30 (233)
438 1lv7_A FTSH; alpha/beta domain 93.1 0.053 1.8E-06 46.1 3.1 21 170-190 47-67 (257)
439 3qks_A DNA double-strand break 93.1 0.05 1.7E-06 45.1 2.9 23 167-189 22-44 (203)
440 3zvl_A Bifunctional polynucleo 93.0 0.064 2.2E-06 49.6 3.9 24 167-190 257-280 (416)
441 3sr0_A Adenylate kinase; phosp 93.0 0.053 1.8E-06 45.3 3.0 20 170-189 2-21 (206)
442 3d8b_A Fidgetin-like protein 1 93.0 0.22 7.4E-06 44.8 7.3 24 167-190 116-139 (357)
443 2grj_A Dephospho-COA kinase; T 93.0 0.054 1.8E-06 44.7 3.0 24 167-190 11-34 (192)
444 1qhl_A Protein (cell division 92.9 0.013 4.4E-07 50.0 -1.0 21 170-190 29-49 (227)
445 3la6_A Tyrosine-protein kinase 92.9 0.61 2.1E-05 40.7 9.9 49 215-273 202-250 (286)
446 1bif_A 6-phosphofructo-2-kinas 92.8 0.058 2E-06 50.6 3.2 24 167-190 38-61 (469)
447 3thx_B DNA mismatch repair pro 92.8 0.19 6.5E-06 51.2 7.2 21 169-189 674-694 (918)
448 3ake_A Cytidylate kinase; CMP 92.8 0.065 2.2E-06 43.7 3.1 21 170-190 4-24 (208)
449 2w58_A DNAI, primosome compone 92.6 0.071 2.4E-06 43.5 3.1 22 169-190 55-76 (202)
450 1nlf_A Regulatory protein REPA 92.6 0.055 1.9E-06 46.8 2.6 23 168-190 30-52 (279)
451 4b4t_I 26S protease regulatory 92.6 0.27 9.3E-06 45.8 7.4 23 168-190 216-238 (437)
452 2iw3_A Elongation factor 3A; a 92.5 0.038 1.3E-06 56.6 1.6 23 169-191 700-722 (986)
453 2iw3_A Elongation factor 3A; a 92.5 0.061 2.1E-06 55.1 3.1 25 169-193 462-486 (986)
454 2ocp_A DGK, deoxyguanosine kin 92.4 0.075 2.6E-06 44.9 3.2 23 168-190 2-24 (241)
455 3thx_A DNA mismatch repair pro 92.4 0.71 2.4E-05 47.1 10.8 20 169-188 663-682 (934)
456 3qkt_A DNA double-strand break 92.3 0.067 2.3E-06 47.9 2.9 23 167-189 22-44 (339)
457 1zcb_A G alpha I/13; GTP-bindi 92.2 0.082 2.8E-06 48.1 3.3 24 166-189 31-54 (362)
458 3cr8_A Sulfate adenylyltranfer 92.1 0.046 1.6E-06 52.6 1.6 23 168-190 369-391 (552)
459 3cwq_A Para family chromosome 92.1 0.045 1.6E-06 45.4 1.4 48 214-272 67-115 (209)
460 2qby_A CDC6 homolog 1, cell di 92.1 0.11 3.8E-06 46.1 4.1 23 168-190 45-67 (386)
461 2zan_A Vacuolar protein sortin 92.0 0.21 7.3E-06 46.4 6.0 24 168-191 167-190 (444)
462 1p5z_B DCK, deoxycytidine kina 92.0 0.058 2E-06 46.3 2.0 25 167-191 23-47 (263)
463 2chg_A Replication factor C sm 91.9 0.1 3.5E-06 42.2 3.4 21 170-190 40-60 (226)
464 1njg_A DNA polymerase III subu 91.9 0.095 3.3E-06 42.9 3.1 21 170-190 47-67 (250)
465 4b4t_J 26S protease regulatory 91.7 0.35 1.2E-05 44.7 7.0 22 169-190 183-204 (405)
466 3bfv_A CAPA1, CAPB2, membrane 91.6 1.5 5.3E-05 37.7 10.8 49 215-273 192-240 (271)
467 4aby_A DNA repair protein RECN 91.6 0.028 9.5E-07 51.5 -0.5 20 170-189 62-81 (415)
468 3t15_A Ribulose bisphosphate c 91.5 0.11 3.9E-06 45.4 3.4 23 168-190 36-58 (293)
469 2axn_A 6-phosphofructo-2-kinas 91.5 0.11 3.8E-06 49.5 3.5 24 166-189 33-56 (520)
470 3n70_A Transport activator; si 91.5 0.083 2.8E-06 41.0 2.2 23 169-191 25-47 (145)
471 2dr3_A UPF0273 protein PH0284; 91.4 0.1 3.5E-06 43.5 2.9 21 169-189 24-44 (247)
472 3cf0_A Transitional endoplasmi 91.4 0.11 3.7E-06 45.6 3.1 22 169-190 50-71 (301)
473 4edh_A DTMP kinase, thymidylat 91.4 0.15 5.1E-06 42.7 3.8 22 168-189 6-27 (213)
474 1e69_A Chromosome segregation 91.3 0.078 2.7E-06 47.1 2.1 22 168-189 24-45 (322)
475 1a7j_A Phosphoribulokinase; tr 91.3 0.068 2.3E-06 47.0 1.6 24 167-190 4-27 (290)
476 3crm_A TRNA delta(2)-isopenten 91.3 0.12 4.2E-06 46.2 3.4 22 169-190 6-27 (323)
477 4b4t_H 26S protease regulatory 91.2 0.43 1.5E-05 44.8 7.2 23 168-190 243-265 (467)
478 3a8t_A Adenylate isopentenyltr 91.2 0.14 4.7E-06 46.2 3.6 23 169-191 41-63 (339)
479 1w1w_A Structural maintenance 91.1 0.11 3.9E-06 47.9 3.1 23 168-190 26-48 (430)
480 4f4c_A Multidrug resistance pr 91.1 0.076 2.6E-06 56.2 2.1 25 166-190 1103-1127(1321)
481 2qmh_A HPR kinase/phosphorylas 91.0 0.14 4.6E-06 42.9 3.1 25 167-191 33-57 (205)
482 1pzn_A RAD51, DNA repair and r 91.0 0.1 3.5E-06 47.1 2.5 24 168-191 131-154 (349)
483 2h92_A Cytidylate kinase; ross 91.0 0.13 4.3E-06 42.5 3.0 22 169-190 4-25 (219)
484 1tf7_A KAIC; homohexamer, hexa 90.9 0.11 3.6E-06 49.5 2.7 20 169-188 40-59 (525)
485 2v1u_A Cell division control p 90.8 0.19 6.6E-06 44.6 4.3 24 167-190 43-66 (387)
486 3syl_A Protein CBBX; photosynt 90.8 0.15 5.3E-06 44.2 3.5 22 168-189 67-88 (309)
487 3ld9_A DTMP kinase, thymidylat 90.7 0.16 5.5E-06 43.0 3.4 24 166-189 19-42 (223)
488 1l8q_A Chromosomal replication 90.7 0.12 4.1E-06 45.5 2.8 22 169-190 38-59 (324)
489 1sxj_C Activator 1 40 kDa subu 90.7 0.13 4.5E-06 45.7 3.0 22 170-191 48-69 (340)
490 4hlc_A DTMP kinase, thymidylat 90.7 0.16 5.4E-06 42.3 3.3 20 170-189 4-23 (205)
491 3g5u_A MCG1178, multidrug resi 90.7 0.12 4.1E-06 54.6 3.1 23 169-191 417-439 (1284)
492 3d3q_A TRNA delta(2)-isopenten 90.6 0.13 4.6E-06 46.3 3.0 22 169-190 8-29 (340)
493 2xtz_A Guanine nucleotide-bind 90.6 0.08 2.7E-06 48.0 1.5 64 202-274 164-241 (354)
494 2ga8_A Hypothetical 39.9 kDa p 90.5 0.15 5E-06 46.4 3.2 23 168-190 24-46 (359)
495 2o5v_A DNA replication and rep 90.5 0.12 4.1E-06 46.9 2.6 23 168-190 26-48 (359)
496 3foz_A TRNA delta(2)-isopenten 90.5 0.17 5.9E-06 45.1 3.5 24 168-191 10-33 (316)
497 3co5_A Putative two-component 90.4 0.22 7.4E-06 38.5 3.7 22 170-191 29-50 (143)
498 3hjn_A DTMP kinase, thymidylat 90.4 0.18 6.1E-06 41.6 3.4 19 171-189 3-21 (197)
499 3ux8_A Excinuclease ABC, A sub 90.4 0.085 2.9E-06 51.8 1.6 21 169-189 349-369 (670)
500 2fna_A Conserved hypothetical 90.4 0.24 8.2E-06 43.4 4.4 22 169-190 31-52 (357)
No 1
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.2e-46 Score=342.95 Aligned_cols=273 Identities=29% Similarity=0.554 Sum_probs=250.1
Q ss_pred cccCcccCCCCCChHHHHHHHHhhhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchh
Q 035873 2 VQYNFKKITVVPNGKDIVDIILSRTQRQTPTVVHKGYSITRLRRFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGD 81 (275)
Q Consensus 2 ~~~~f~~ip~v~~~~eli~~~~~r~~r~~~t~~~~~~~~~rir~~~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~e 81 (275)
|.++|++||+||||+||+|++|+||+|++||.+++++++.|||++|+++|+++++.+++.|.+++..||.++++||||++
T Consensus 1 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~ 80 (357)
T 2e87_A 1 MRNPFERMPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQE 80 (357)
T ss_dssp CCCTTTTCCCCCCHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHHHHHHhhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccC
Q 035873 82 LLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARL 161 (275)
Q Consensus 82 l~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~ 161 (275)
+++.+++.+++..+|+++.++......++.+|...++.+.....++..++...+++.+...++...+.++...++.+.+.
T Consensus 81 l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 160 (357)
T 2e87_A 81 LVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDL 160 (357)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999887776777788888999999999999888888888888888888888
Q ss_pred CCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHH
Q 035873 162 PSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSI 241 (275)
Q Consensus 162 ~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~ 241 (275)
+.......+|+++|+||||||||+|+|++..+.++++|++|.+...+++..++..+++|||||+.+.+...++.+++++.
T Consensus 161 ~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 161 PVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp CCCCSSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 87766788999999999999999999999998888999999999999888888899999999999887777777887777
Q ss_pred HHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.++.+.+|++|+|+|++++++.+.++|.+++.+
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~ 273 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEE 273 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHH
Confidence 777777799999999998888899998888765
No 2
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.1e-19 Score=162.81 Aligned_cols=93 Identities=25% Similarity=0.407 Sum_probs=77.8
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
.+..+|++||+||||||||+|+|++.++.+++|||||.+++.+.+.+.+.+++++||||+++.+....+.. .+.+..++
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g-~~~l~~i~ 148 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRG-KQVIAVAR 148 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHH-HHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHH-HHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999998766544333 44456666
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.+ |++++|+|++++
T Consensus 149 ~a-d~il~vvD~~~p 162 (376)
T 4a9a_A 149 TC-NLLFIILDVNKP 162 (376)
T ss_dssp HC-SEEEEEEETTSH
T ss_pred hc-CccccccccCcc
Confidence 66 999999999864
No 3
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.72 E-value=5.5e-17 Score=139.31 Aligned_cols=118 Identities=57% Similarity=0.935 Sum_probs=87.5
Q ss_pred HHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhH
Q 035873 156 QHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNI 235 (275)
Q Consensus 156 ~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ 235 (275)
.....+|.++....+|+++|.+|||||||+|+|++....+.+++++|.......+.+.+..+++|||||..+.+...+..
T Consensus 17 ~~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 96 (228)
T 2qu8_A 17 LYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNT 96 (228)
T ss_dssp -----CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCH
T ss_pred heeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhh
Confidence 34557788878889999999999999999999999888788899999999988888888899999999998765545555
Q ss_pred HHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 236 IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 236 ~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
++..++..+...+|+++||+|+++...........++.
T Consensus 97 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 134 (228)
T 2qu8_A 97 IEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFY 134 (228)
T ss_dssp HHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHH
T ss_pred HHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHH
Confidence 55555555555669999999999887776555545443
No 4
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.68 E-value=2.8e-16 Score=145.08 Aligned_cols=177 Identities=21% Similarity=0.137 Sum_probs=95.8
Q ss_pred CCchhhhhhhhcchhhHHhhcccchhhhhhh--hHHHHHhhhcccCcc-------ccchhhHHHHHhhhHHHHHHhhCch
Q 035873 77 PFYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDS-------LYCCKSLEVAALGRMCTVVKRIGPS 147 (275)
Q Consensus 77 pF~~el~~il~~~d~~k~~l~~v~~a~~~~~--~i~~~~~~~ik~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~ 147 (275)
+-+.-+++|+-.++..+.+..|+..+...+. ++ ..|..+.+.+.. .+.++..++....++..+..++..
T Consensus 85 dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~- 162 (364)
T 2qtf_A 85 DKILLLLEIFALHAGSKEAKMQIELARLKYELPII-KETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELES- 162 (364)
T ss_dssp CHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC---------------------CHHHHHHHHHHHHHHHHHH-
T ss_pred ehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4566778888777877776777777776655 33 556554443211 112233344555555544433311
Q ss_pred HHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCC
Q 035873 148 LAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILD 227 (275)
Q Consensus 148 l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~ 227 (275)
+...+... +......+.+.|+++|+||||||||+|+|++..+.+++++|+|.++..+.+.+++..+.++||||++.
T Consensus 163 ---~~~~r~~~-r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 163 ---IKIFKEKS-IESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp ---HHC--------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred ---HHHHHHHH-HHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 11111111 11111223456999999999999999999999888889999999999999999999999999999876
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
..+....+..+.++..+.. +|++++|+|++++
T Consensus 239 ~lp~~lve~f~~tl~~~~~-aD~il~VvD~s~~ 270 (364)
T 2qtf_A 239 GIPPQIVDAFFVTLSEAKY-SDALILVIDSTFS 270 (364)
T ss_dssp SCCGGGHHHHHHHHHGGGG-SSEEEEEEETTSC
T ss_pred cCCHHHHHHHHHHHHHHHh-CCEEEEEEECCCC
Confidence 5333222211223333333 4999999999865
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.63 E-value=1.9e-15 Score=135.97 Aligned_cols=93 Identities=25% Similarity=0.314 Sum_probs=73.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhH-HHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNI-IEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~-~e~~~~~~l~ 245 (275)
...|+++|.||||||||+|+|++.++. +++.|+||.....+.+.+++.++++|||||+.+... ..+. +...+..+++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~-~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD-ALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS-HHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh-HHHHHHHHHHHHHHh
Confidence 457999999999999999999999875 678899999988888888889999999999886432 2222 2233445555
Q ss_pred hccceeEEEEeCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCG 262 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g 262 (275)
.+ |+++||+|++++.+
T Consensus 86 ~a-d~il~VvD~~~~~~ 101 (301)
T 1wf3_A 86 DV-NAVVWVVDLRHPPT 101 (301)
T ss_dssp SC-SEEEEEEETTSCCC
T ss_pred cC-CEEEEEEECCCCCC
Confidence 55 99999999997644
No 6
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.62 E-value=6e-15 Score=121.21 Aligned_cols=98 Identities=24% Similarity=0.277 Sum_probs=73.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
..+|+++|.+|||||||+|+|++... .+.++|++|.+...+.+.+++..+++|||||+.+................++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 45899999999999999999998875 47889999999999999999889999999998653211111111122344555
Q ss_pred ccceeEEEEeCCCCCCCCHH
Q 035873 247 LRSAVLFFLDISGSCGYSIA 266 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~ 266 (275)
. |++++|+|+++.......
T Consensus 84 a-d~~i~v~D~~~~~s~~~~ 102 (172)
T 2gj8_A 84 A-DRVLFMVDGTTTDAVDPA 102 (172)
T ss_dssp C-SEEEEEEETTTCCCCSHH
T ss_pred C-CEEEEEEECCCCCCHHHH
Confidence 5 999999999976655533
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.61 E-value=2.9e-15 Score=135.13 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=77.8
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEec-CeeEEEEeCCCCCCCC--CCchhHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRP--FEDHNIIEMCSI 241 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~--~~~~~~~e~~~~ 241 (275)
+....|+++|.||||||||+|+|+|.++. +++.++||.....+....+ +.++.+|||||+.+.. ......+...+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 34568999999999999999999999876 7889999999999999988 8999999999998644 111122223445
Q ss_pred HHHHhccceeEEEEeCCCCCCCC
Q 035873 242 TALAHLRSAVLFFLDISGSCGYS 264 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~g~~ 264 (275)
.++..+ |+++||+|+++..+..
T Consensus 88 ~~l~~a-D~il~VvD~~~~~~~~ 109 (308)
T 3iev_A 88 QSLEEA-DVILFMIDATEGWRPR 109 (308)
T ss_dssp HHHHHC-SEEEEEEETTTBSCHH
T ss_pred HHhhcC-CEEEEEEeCCCCCCch
Confidence 666666 9999999999654433
No 8
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=2.5e-15 Score=141.82 Aligned_cols=92 Identities=24% Similarity=0.353 Sum_probs=65.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC-CchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF-EDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~e~~~~~~l~~ 246 (275)
++|+++|.||||||||+|+|++.+.. ++++|++|++...+.+.|++..+++|||||+..... .....+..++..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999998764 789999999999999999999999999999875321 1224455566677777
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
+ |++|||+|++.+.
T Consensus 82 a-d~il~V~D~~~~~ 95 (439)
T 1mky_A 82 A-DLVLFVVDGKRGI 95 (439)
T ss_dssp C-SEEEEEEETTTCC
T ss_pred C-CEEEEEEECCCCC
Confidence 6 9999999998543
No 9
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.58 E-value=4.2e-15 Score=129.88 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCC--cccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAF--TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~--tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.||||||||+|+|++.++....+++ +|.....+...+++..+.||||||+.+........+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 35678999999999999999999999887655443 8889988999999999999999999764322101111111222
Q ss_pred H---HhccceeEEEEeCCC
Q 035873 244 L---AHLRSAVLFFLDISG 259 (275)
Q Consensus 244 l---~~~~d~il~viD~s~ 259 (275)
+ ...+|++|+|+|++.
T Consensus 99 ~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB
T ss_pred HHhcCCCCCEEEEEEeCCC
Confidence 2 234599999999984
No 10
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.57 E-value=1.2e-14 Score=127.92 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc-h-hHHHHHHHHHH-H
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED-H-NIIEMCSITAL-A 245 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~-~~~e~~~~~~l-~ 245 (275)
++|+++|.||||||||+|+|+|.+..++++|++|.+...+.+.+++..+.+|||||+.+..... . ...+..+...+ .
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 4799999999999999999999998899999999999999999999999999999987654310 0 12222333333 1
Q ss_pred hccceeEEEEeCCC
Q 035873 246 HLRSAVLFFLDISG 259 (275)
Q Consensus 246 ~~~d~il~viD~s~ 259 (275)
..+|++++|+|++.
T Consensus 82 ~~~d~vi~VvDas~ 95 (256)
T 3iby_A 82 LEYDCIINVIDACH 95 (256)
T ss_dssp SCCSEEEEEEEGGG
T ss_pred CCCCEEEEEeeCCC
Confidence 33599999999985
No 11
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.55 E-value=5.4e-14 Score=121.56 Aligned_cols=93 Identities=23% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCC--CcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYA--FTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~--~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........+ ++|.......+.+++..+.||||||+.+.........+.......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999988766666 789999999999999999999999998766544322222211111
Q ss_pred --HhccceeEEEEeCCC
Q 035873 245 --AHLRSAVLFFLDISG 259 (275)
Q Consensus 245 --~~~~d~il~viD~s~ 259 (275)
...+|++|+|+|++.
T Consensus 108 ~~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGR 124 (239)
T ss_dssp HTTTCCSEEEEEEETTC
T ss_pred hcCCCCcEEEEEeeCCC
Confidence 123499999999974
No 12
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.54 E-value=6e-15 Score=139.07 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=61.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
++|+++|.||||||||+|+|++.... +.+.|++|.+...+.+.|++..+++|||||+..........+..++..+++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999988764 78999999999999998999999999999987443333334445566677776
Q ss_pred cceeEEEEeCCCCCC
Q 035873 248 RSAVLFFLDISGSCG 262 (275)
Q Consensus 248 ~d~il~viD~s~~~g 262 (275)
|++|||+|++.+..
T Consensus 84 -d~il~vvD~~~~~~ 97 (436)
T 2hjg_A 84 -DVIIFMVNGREGVT 97 (436)
T ss_dssp -SEEEEEEETTTCSC
T ss_pred -CEEEEEEeCCCCCC
Confidence 99999999986543
No 13
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.54 E-value=3.8e-14 Score=125.65 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=71.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC-ch-hHHHHHHHHHH-
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DH-NIIEMCSITAL- 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~-~~~e~~~~~~l- 244 (275)
..+|+++|.+|||||||+|+|+|....++++|++|.+...+.+.+.+..+.+|||||+.+.... .. ...+..+...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 4589999999999999999999999889999999999999999998899999999998764421 10 11122222332
Q ss_pred HhccceeEEEEeCCC
Q 035873 245 AHLRSAVLFFLDISG 259 (275)
Q Consensus 245 ~~~~d~il~viD~s~ 259 (275)
...+|++++|+|++.
T Consensus 83 ~~~~d~ii~VvD~~~ 97 (274)
T 3i8s_A 83 SGDADLLINVVDASN 97 (274)
T ss_dssp HTCCSEEEEEEEGGG
T ss_pred hcCCCEEEEEecCCC
Confidence 234599999999985
No 14
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.53 E-value=8.6e-14 Score=113.13 Aligned_cols=89 Identities=24% Similarity=0.328 Sum_probs=65.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH-hc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA-HL 247 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~-~~ 247 (275)
.+|+++|.+|||||||+|+|++....++.+|++|.+...+.+.+++..+++|||||..+..... ..+..+...++ ..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS--HHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc--hhHHHHHHHHhcCC
Confidence 5799999999999999999999887778889999988888888888899999999987643222 11222233443 23
Q ss_pred cceeEEEEeCCC
Q 035873 248 RSAVLFFLDISG 259 (275)
Q Consensus 248 ~d~il~viD~s~ 259 (275)
+|++++|+|++.
T Consensus 82 ~~~~i~v~D~~~ 93 (165)
T 2wji_A 82 PDLVVNIVDATA 93 (165)
T ss_dssp CSEEEEEEETTC
T ss_pred CCEEEEEecCCc
Confidence 599999999984
No 15
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.52 E-value=8.3e-15 Score=134.13 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=110.8
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh-------------HHHHHhhhHHHHHHhhCchHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS-------------LEVAALGRMCTVVKRIGPSLAYLEQIR 155 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~-------------~~~~~~~r~~~~~~~~~~~l~~l~~~~ 155 (275)
..+|++.-|+.+...+....-+++.+-.++.|+.+++.+. +..+..|+.+....++... .
T Consensus 61 ~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~-------~ 133 (342)
T 1lnz_A 61 KKHFKAIRGEHGMSKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATP-------A 133 (342)
T ss_dssp CCEEECCCCCCCCSTTCCCCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBT-------T
T ss_pred cceEEcCCCCCCCCCCCcCCCCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccc-------c
Confidence 4678999999999999999999999999999988876431 0000011111111111100 0
Q ss_pred HHhccCCCCCC---------------CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC-eeEEE
Q 035873 156 QHMARLPSIDP---------------NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQV 219 (275)
Q Consensus 156 ~~l~~~~~~~~---------------~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~l 219 (275)
.+.|.... ..+.|+++|.||||||||+|+|++.++.++++||||..+..+.+.+.+ ..+++
T Consensus 134 ---~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l 210 (342)
T 1lnz_A 134 ---NPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVM 210 (342)
T ss_dssp ---BSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEE
T ss_pred ---ccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEE
Confidence 11111110 124789999999999999999999999999999999999999998876 78999
Q ss_pred EeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCC
Q 035873 220 IDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYS 264 (275)
Q Consensus 220 iDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~ 264 (275)
|||||+.+......... ...+..+..+ |++|||+|+++..+..
T Consensus 211 ~DtPG~i~~a~~~~~l~-~~fl~~i~~~-d~ll~VvD~s~~~~~~ 253 (342)
T 1lnz_A 211 ADLPGLIEGAHQGVGLG-HQFLRHIERT-RVIVHVIDMSGLEGRD 253 (342)
T ss_dssp EEHHHHHHHTTCTTTTH-HHHHHHHHHC-CEEEEEEESSCSSCCC
T ss_pred ecCCCCcccccccchhH-HHHHHHHHhc-cEEEEEEECCcccccC
Confidence 99999876433322221 1122333334 9999999998643333
No 16
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.52 E-value=2.2e-14 Score=136.83 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=74.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCC-CCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL-DRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.||||||||+|+|++.+. .++++|+||.+.....+.+++..+.+|||||+. +.........-..+...++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 35899999999999999999998874 589999999999999999999999999999987 4332111111123455666
Q ss_pred hccceeEEEEeCCCCCC
Q 035873 246 HLRSAVLFFLDISGSCG 262 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g 262 (275)
.. |++|||+|++++..
T Consensus 323 ~a-D~vl~VvD~s~~~s 338 (482)
T 1xzp_A 323 KA-DIVLFVLDASSPLD 338 (482)
T ss_dssp HC-SEEEEEEETTSCCC
T ss_pred cc-cEEEEEecCCCCCC
Confidence 66 99999999986543
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.52 E-value=1.3e-14 Score=137.51 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=70.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.++|+++|.||||||||+|+|++.... +.+.|++|.+...+.+.+.+..+++|||||+..........+..++..+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 568999999999999999999998764 7889999999999998888999999999998754444455666666677777
Q ss_pred ccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 247 LRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 247 ~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
. |++|||+|++.........-++++
T Consensus 103 a-d~il~VvD~~~~~~~~d~~l~~~l 127 (456)
T 4dcu_A 103 A-DVIIFMVNGREGVTAADEEVAKIL 127 (456)
T ss_dssp C-SEEEEEEESSSCSCHHHHHHHHHH
T ss_pred C-CEEEEEEeCCCCCChHHHHHHHHH
Confidence 6 999999999865444333334443
No 18
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.51 E-value=8.1e-14 Score=111.58 Aligned_cols=91 Identities=26% Similarity=0.285 Sum_probs=63.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHL 247 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (275)
++|+++|.+|||||||+|+|.+.... ..+++++|.+.....+.+++..+.+|||||..+... ....+.......++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-WEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-hHHHHHHHHHHHHHhC
Confidence 47999999999999999999988754 678888999998888888889999999999875432 2222333333445554
Q ss_pred cceeEEEEeCCCCC
Q 035873 248 RSAVLFFLDISGSC 261 (275)
Q Consensus 248 ~d~il~viD~s~~~ 261 (275)
|++++|+|+++..
T Consensus 81 -~~~i~v~d~~~~~ 93 (161)
T 2dyk_A 81 -EVVLFAVDGRAEL 93 (161)
T ss_dssp -SEEEEEEESSSCC
T ss_pred -CEEEEEEECCCcc
Confidence 9999999999653
No 19
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.51 E-value=9.9e-14 Score=122.04 Aligned_cols=90 Identities=23% Similarity=0.251 Sum_probs=73.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH-h
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA-H 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~-~ 246 (275)
..+|+++|.||||||||+|+|+|....++++|++|.+...+.+.+.+..+.+|||||.......... +..+...+. .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~~~~~ 82 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID--EKIARDYLLKG 82 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH--HHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH--HHHHHHHHhhc
Confidence 4689999999999999999999999889999999999999999888899999999998764432222 223334443 3
Q ss_pred ccceeEEEEeCCC
Q 035873 247 LRSAVLFFLDISG 259 (275)
Q Consensus 247 ~~d~il~viD~s~ 259 (275)
.+|++++|+|++.
T Consensus 83 ~~d~ii~V~D~t~ 95 (258)
T 3a1s_A 83 DADLVILVADSVN 95 (258)
T ss_dssp CCSEEEEEEETTS
T ss_pred CCCEEEEEeCCCc
Confidence 4599999999985
No 20
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=8e-15 Score=135.00 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=64.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC-----------------eeEEEEeCCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-----------------LRYQVIDTPGILDRPFE 231 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~~~ 231 (275)
.+|+++|.||||||||+|+|++..+.++++||||.++..+.+.+.+ ..+++|||||+.+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 4799999999999999999999998899999999999998888766 46999999999864311
Q ss_pred chhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 232 DHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
... +....+..++++ |++++|+|+++.
T Consensus 83 ~~g-l~~~fl~~ir~a-d~il~VvD~~~~ 109 (363)
T 1jal_A 83 GEG-LGNKFLANIRET-DAIGHVVRCFEN 109 (363)
T ss_dssp HGG-GTCCHHHHHHTC-SEEEEEEECSCC
T ss_pred cch-HHHHHHHHHHhc-CeEEEEEecCCC
Confidence 100 101123445665 999999999863
No 21
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.50 E-value=1.2e-13 Score=120.77 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=68.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCccc-ccCCC-cccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHH---HHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDV-QPYAF-TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNII---EMCSI 241 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v-~~~~~-tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~---e~~~~ 241 (275)
...+|+++|.+|||||||+|+|++..... ...|+ +|.....+.+.+++.++.+|||||+.+......... .....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999988553 33454 788888888899999999999999987654332211 11122
Q ss_pred HHHHhccceeEEEEeCCC
Q 035873 242 TALAHLRSAVLFFLDISG 259 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~ 259 (275)
..++. +|++++|+|++.
T Consensus 101 ~~~~~-~d~il~V~d~~~ 117 (260)
T 2xtp_A 101 LSAPG-PHVLLLVTQLGR 117 (260)
T ss_dssp HHTTC-CSEEEEEEETTC
T ss_pred hcCCC-CcEEEEEEeCCC
Confidence 23333 499999999984
No 22
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.49 E-value=3.4e-14 Score=135.46 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=49.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHH----HHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM----CSIT 242 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~----~~~~ 242 (275)
..+|+++|.||||||||+|+|++.+. .++++|+||.+.....+.+++..+.+|||||+.+.. ..++. .+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~----~~ve~~gi~~~~~ 308 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG----EEIEHEGIRRSRM 308 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------------------------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch----hHHHHHHHHHHHh
Confidence 35799999999999999999999864 588999999999999999999999999999986522 12222 1222
Q ss_pred HHHhccceeEEEEeCCCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~g~ 263 (275)
.++. +|++|||+|++++...
T Consensus 309 ~~~~-aD~vl~VvD~s~~~s~ 328 (476)
T 3gee_A 309 KMAE-ADLILYLLDLGTERLD 328 (476)
T ss_dssp CCSS-CSEEEEEEETTTCSSG
T ss_pred hccc-CCEEEEEEECCCCcch
Confidence 3333 4999999999976543
No 23
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.49 E-value=1.2e-13 Score=122.04 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=73.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH-h
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA-H 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~-~ 246 (275)
..+|+++|.||||||||+|+|+|....++++|++|.+...+.+.+++..+.+|||||+.+....... +..+...+. .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID--ELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH--HHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH--HHHHHHhhhcc
Confidence 4589999999999999999999998889999999999999999999999999999998865443322 223333342 3
Q ss_pred ccceeEEEEeCCC
Q 035873 247 LRSAVLFFLDISG 259 (275)
Q Consensus 247 ~~d~il~viD~s~ 259 (275)
.+|++++|+|++.
T Consensus 81 ~~d~vi~v~D~~~ 93 (271)
T 3k53_A 81 NADVIVDIVDSTC 93 (271)
T ss_dssp CCSEEEEEEEGGG
T ss_pred CCcEEEEEecCCc
Confidence 3599999999985
No 24
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.48 E-value=1.6e-13 Score=116.38 Aligned_cols=107 Identities=13% Similarity=0.029 Sum_probs=75.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC-c-ccccCCCcccceEEEEEE-ecCeeEEEEeCCCCCCCCCCc--hhHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD-V-DVQPYAFTTKSLFVGHTD-YKYLRYQVIDTPGILDRPFED--HNIIEMCS 240 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~-~-~v~~~~~tT~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~--~~~~e~~~ 240 (275)
...++|+++|.+|||||||+|+|++.. . .+.+.+++|.......+. +++..+.+|||||+.+..... +..+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 356799999999999999999999987 3 578889999888766665 456789999999987643322 22223333
Q ss_pred HHHHHhc--cceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 241 ITALAHL--RSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 241 ~~~l~~~--~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
...+... .|+++||+|+++........-++.+
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l 140 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWF 140 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 3445553 3789999999975443333333333
No 25
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.48 E-value=2.7e-14 Score=132.78 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=53.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe-----------------eEEEEeCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRP 229 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~ 229 (275)
...+|+++|.||||||||+|+|++.++.++++||||.++..+.+.+.+. .+++|||||+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3458999999999999999999999888999999999999999887542 48999999998644
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
.... .+.......++++ |++++|+|+++.
T Consensus 101 s~~~-glg~~~l~~ir~a-D~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQ-GLGNAFLSHISAC-DGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTS-SSEEEEEEC---
T ss_pred chhh-HHHHHHHHHHHhc-CeEEEEEecCCC
Confidence 3211 1111334556666 999999999854
No 26
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.48 E-value=3.4e-14 Score=132.57 Aligned_cols=89 Identities=29% Similarity=0.427 Sum_probs=47.8
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe---------------------c---CeeEEEEeCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY---------------------K---YLRYQVIDTPGI 225 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~---------------------~---~~~~~liDTpG~ 225 (275)
+|+++|.||||||||+|+|++.+..++++||||.+++.+...+ + ..++++|||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999999877899999999998886532 2 247899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 226 LDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
.+....... +..+.+..++.+ |++++|+|+++.
T Consensus 82 ~~~a~~~~~-l~~~~l~~i~~a-D~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEGRG-LGNKFLDDLRMA-SALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTC-SEEEEEEETTCC
T ss_pred ccchhhhhh-HHHHHHHHHhcC-CEEEEEEecccc
Confidence 754322111 111111233444 999999999875
No 27
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.48 E-value=1.2e-13 Score=122.45 Aligned_cols=89 Identities=21% Similarity=0.180 Sum_probs=70.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh-
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH- 246 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~- 246 (275)
..+|+++|.||||||||+|+|+|....++++|++|.+...+.+.+ +..+++|||||...-.... .-+..+...+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS--PEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS--HHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC--hHHHHHHHHHhcC
Confidence 458999999999999999999999888999999999988888766 7789999999987543222 223334445543
Q ss_pred ccceeEEEEeCCC
Q 035873 247 LRSAVLFFLDISG 259 (275)
Q Consensus 247 ~~d~il~viD~s~ 259 (275)
.+|++++|+|++.
T Consensus 80 ~~d~vi~V~D~t~ 92 (272)
T 3b1v_A 80 RADSILNVVDATN 92 (272)
T ss_dssp CCSEEEEEEEGGG
T ss_pred CCCEEEEEecCCc
Confidence 4699999999984
No 28
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.47 E-value=3.6e-13 Score=110.97 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=71.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|++....+..+|++|.+...+.+.+++..+++|||||..+..... ..+......+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS--HHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc--HHHHHHHHHHhc
Confidence 346899999999999999999999888888899999999999999989999999999987543221 112222334432
Q ss_pred -ccceeEEEEeCCC
Q 035873 247 -LRSAVLFFLDISG 259 (275)
Q Consensus 247 -~~d~il~viD~s~ 259 (275)
.+|++++|+|++.
T Consensus 84 ~~~~~~i~v~d~~~ 97 (188)
T 2wjg_A 84 EKPDLVVNIVDATA 97 (188)
T ss_dssp HCCSEEEEEEEGGG
T ss_pred cCCCEEEEEecchh
Confidence 3599999999973
No 29
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=1.6e-13 Score=120.54 Aligned_cols=93 Identities=23% Similarity=0.306 Sum_probs=69.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
...+|+++|.+|||||||+|+|++... .+.+++++|.......+.+++..+.+|||||+.+.........+ .....+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~-~i~~~l~ 113 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALE-LIKGFLV 113 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHH-HHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHH-HHHHHHh
Confidence 457899999999999999999999886 57888999999988888899999999999998765432222211 1112221
Q ss_pred -hccceeEEEEeCCCC
Q 035873 246 -HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 -~~~d~il~viD~s~~ 260 (275)
..+|++|||+|++..
T Consensus 114 ~~~~~~il~V~~~d~~ 129 (262)
T 3def_A 114 NRTIDVLLYVDRLDVY 129 (262)
T ss_dssp TCEECEEEEEEESSCS
T ss_pred cCCCCEEEEEEcCCCC
Confidence 234899999988754
No 30
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.45 E-value=2.9e-13 Score=119.42 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=68.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH-
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL- 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l- 244 (275)
...+|+++|.+|+|||||+|+|++... .+++++++|.......+..++..+.+|||||+.+........++.. ...+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i-~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNII-KSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHH-HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHH-HHHhh
Confidence 457899999999999999999998886 4778888898888888888888999999999876432222212111 1111
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
...+|++|||+|++..
T Consensus 117 ~~~~d~il~v~~~d~~ 132 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY 132 (270)
T ss_dssp TCEECEEEEEEESSCC
T ss_pred cCCCCEEEEEEeCCCC
Confidence 1235999999998753
No 31
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=3e-13 Score=125.78 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecC-----------------eeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKY-----------------LRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 228 (275)
....++++|.||||||||+|+|++..+ .++++||||..+..|.+.+.+ ..++++||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 456899999999999999999999988 799999999999999998876 35899999999865
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
.... ..+.......++.. |++++|+|+++
T Consensus 99 ~s~~-e~L~~~fl~~ir~~-d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTG-VGLGNAFLSHVRAV-DAIYQVVRAFD 127 (392)
T ss_dssp CCSS-SSSCHHHHHHHTTC-SEEEEEEECCC
T ss_pred CcHH-HHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 4332 11111234556665 99999999986
No 32
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.44 E-value=1.2e-13 Score=130.13 Aligned_cols=95 Identities=21% Similarity=0.229 Sum_probs=66.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC--chhHHH-HHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DHNIIE-MCSI 241 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~e-~~~~ 241 (275)
....+|+++|.||||||||+|+|++.... ++++++||.+.....+.+++..+++|||||+.+.... ....+. ..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 45679999999999999999999998764 8899999999999999999999999999998664431 112221 1234
Q ss_pred HHHHhccceeEEEEeCCCCC
Q 035873 242 TALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~ 261 (275)
.+++.. |++++|+|++++.
T Consensus 253 ~~~~~a-d~~llv~D~~~~~ 271 (436)
T 2hjg_A 253 KAIDRS-EVVAVVLDGEEGI 271 (436)
T ss_dssp HHHHHC-SEEEEEEETTTCC
T ss_pred HHHHhC-CEEEEEEcCCcCC
Confidence 566665 9999999999654
No 33
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.43 E-value=1.8e-13 Score=126.43 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=70.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec---------------------CeeEEEEeCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---------------------YLRYQVIDTPGILD 227 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~---------------------~~~~~liDTpG~~~ 227 (275)
.+|+++|.||||||||+|+|++..+.++++||+|..++.+...+. +..+++|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 368999999999999999999887788999999999999887653 34699999999987
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
........ ..+.+..++.+ |++++|+|+++
T Consensus 82 ~a~~~~~l-g~~fl~~ir~a-d~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGL-GNQFLAHIREV-AAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCT-THHHHHHHHTC-SEEEEEEECCC
T ss_pred cccccchH-HHHHHHHHHhC-CEEEEEEECCC
Confidence 54332111 12234556666 99999999986
No 34
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.41 E-value=1.5e-12 Score=107.88 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=57.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC--cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc--hhHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD--VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED--HNIIEMCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~~e~~~~~ 242 (275)
..++|+++|.+|||||||+|+|++.. ....+.+++|....... . +.++.+|||||+.+..... ...+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 56799999999999999999999886 23677777787765433 2 3479999999976654332 2222222223
Q ss_pred HHHhcc--ceeEEEEeCCCCCC
Q 035873 243 ALAHLR--SAVLFFLDISGSCG 262 (275)
Q Consensus 243 ~l~~~~--d~il~viD~s~~~g 262 (275)
.+.... |++++|+|+++...
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~ 120 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPS 120 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC
T ss_pred HHhhhhcCCEEEEEEECCCCCC
Confidence 344432 89999999996543
No 35
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.41 E-value=1.1e-13 Score=131.52 Aligned_cols=90 Identities=28% Similarity=0.282 Sum_probs=62.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHH----HHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM----CSIT 242 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~----~~~~ 242 (275)
..+|+++|.||||||||+|+|++.+. .+.++|+||.+.....+.+++..+.+|||||+.+.. ..++. .+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~----~~ve~~gi~~~~~ 299 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS----DQVEKIGVERSRQ 299 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------------------------C
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch----hHHHHHHHHHHhh
Confidence 35799999999999999999998764 478889999999888888999999999999985422 22222 1222
Q ss_pred HHHhccceeEEEEeCCCCCC
Q 035873 243 ALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~~g 262 (275)
.+.. +|++++|+|++++..
T Consensus 300 ~~~~-aD~vl~VvD~s~~~~ 318 (462)
T 3geh_A 300 AANT-ADLVLLTIDAATGWT 318 (462)
T ss_dssp CCCS-CSEEEEEEETTTCSC
T ss_pred hhhc-CCEEEEEeccCCCCC
Confidence 3333 499999999997543
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.41 E-value=4.1e-13 Score=109.34 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=68.4
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
....++|+++|.+|||||||+|+|++..+.....+++|.+.....+.+++..+.+|||||..+..... ...+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 76 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR--------ARGA 76 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC--------CSSC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH--------HHHH
Confidence 34677999999999999999999999888777778888888777788889999999999975432111 0112
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
..+|++++|+|++++.
T Consensus 77 -~~~d~~i~v~d~~~~~ 92 (178)
T 2lkc_A 77 -QVTDIVILVVAADDGV 92 (178)
T ss_dssp -CCCCEEEEEEETTCCC
T ss_pred -hhCCEEEEEEECCCCC
Confidence 2248999999998654
No 37
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.40 E-value=8.9e-14 Score=124.98 Aligned_cols=88 Identities=25% Similarity=0.325 Sum_probs=66.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHH----HHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEM----CSIT 242 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~----~~~~ 242 (275)
...|+++|.||||||||+|+|++.++. +++.|+||.....+.+.+++.++.++||||+...+ ...+.. .+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHHHH
Confidence 457999999999999999999999875 67888999998888888888999999999976111 111110 0112
Q ss_pred HHHhccceeEEEEeCCC
Q 035873 243 ALAHLRSAVLFFLDISG 259 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~ 259 (275)
+++. +|++++|+|+++
T Consensus 85 ~l~~-~D~vl~Vvd~~~ 100 (301)
T 1ega_A 85 SIGD-VELVIFVVEGTR 100 (301)
T ss_dssp CCCC-EEEEEEEEETTC
T ss_pred HHhc-CCEEEEEEeCCC
Confidence 2333 389999999986
No 38
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.39 E-value=4.4e-12 Score=113.60 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=63.6
Q ss_pred HHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhcCCcc------cccCC---Ccccce----------------
Q 035873 151 LEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITRADVD------VQPYA---FTTKSL---------------- 205 (275)
Q Consensus 151 l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~~~~~------v~~~~---~tT~~~---------------- 205 (275)
++++++.+..+.......+.|+++|.+|||||||+|+|+|.... +...| .+|...
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (315)
T 1jwy_B 7 INKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLH 86 (315)
T ss_dssp HHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESS
T ss_pred HHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhc
Confidence 44455555444322356789999999999999999999998752 22333 222210
Q ss_pred ----------------------EEE----------E---EEecCeeEEEEeCCCCCCCCC-----CchhHHHHHHHHHHH
Q 035873 206 ----------------------FVG----------H---TDYKYLRYQVIDTPGILDRPF-----EDHNIIEMCSITALA 245 (275)
Q Consensus 206 ----------------------~~~----------~---~~~~~~~~~liDTpG~~~~~~-----~~~~~~e~~~~~~l~ 245 (275)
..+ . ....+.++.+|||||+.+.+. .....+...+..++.
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (315)
T 1jwy_B 87 KPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK 166 (315)
T ss_dssp STTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc
Confidence 000 0 111345799999999976331 222334445556677
Q ss_pred hccceeEEEEeCC
Q 035873 246 HLRSAVLFFLDIS 258 (275)
Q Consensus 246 ~~~d~il~viD~s 258 (275)
.. |++++|+|++
T Consensus 167 ~~-d~iilvvd~~ 178 (315)
T 1jwy_B 167 KQ-NAIIVAVTPA 178 (315)
T ss_dssp ST-TEEEEEEEES
T ss_pred CC-CeEEEEEEec
Confidence 66 9999999974
No 39
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=8.6e-13 Score=124.98 Aligned_cols=96 Identities=22% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCC--chhHHH-HHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DHNIIE-MCSI 241 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~e-~~~~ 241 (275)
....+|+++|.+|||||||+|+|++.. ..++++++||.+.....+.+++..+++|||||+.+.... ....+. ..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 456799999999999999999999876 458999999999998999999999999999998765421 112221 2233
Q ss_pred HHHHhccceeEEEEeCCCCCC
Q 035873 242 TALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~~g 262 (275)
.+++.. |++|+|+|++++..
T Consensus 273 ~~~~~a-d~~llviD~~~~~~ 292 (456)
T 4dcu_A 273 KAIDRS-EVVAVVLDGEEGII 292 (456)
T ss_dssp HHHHHC-SEEEEEEETTTCCC
T ss_pred HHHhhC-CEEEEEEeCCCCcC
Confidence 455555 99999999997544
No 40
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.37 E-value=7.4e-12 Score=111.05 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=68.1
Q ss_pred HHHHHHHhccCCC-CCCCCceeEeeccCCCCHHHHHHHHhcCCcc------cccCCC----------------------c
Q 035873 151 LEQIRQHMARLPS-IDPNTRTILICWYPNVGKSSFMNKITRADVD------VQPYAF----------------------T 201 (275)
Q Consensus 151 l~~~~~~l~~~~~-~~~~~~~i~ivG~~nvGKStlin~l~~~~~~------v~~~~~----------------------t 201 (275)
++++...+..... .....++|+++|.+|||||||+|+|+|.+.. +++.|+ +
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~t 87 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 87 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccC
Confidence 3444555544321 1245679999999999999999999988752 344453 4
Q ss_pred ccceE-----------------------EEEEEe-cCeeEEEEeCCCCCCCCC----Cc-hhHHHHHHHHHHHhccceeE
Q 035873 202 TKSLF-----------------------VGHTDY-KYLRYQVIDTPGILDRPF----ED-HNIIEMCSITALAHLRSAVL 252 (275)
Q Consensus 202 T~~~~-----------------------~~~~~~-~~~~~~liDTpG~~~~~~----~~-~~~~e~~~~~~l~~~~d~il 252 (275)
|.+.. ...+.. ...++.+|||||+.+... +. ...+......+++...+++|
T Consensus 88 t~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 167 (299)
T 2aka_B 88 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLIL 167 (299)
T ss_dssp CHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEE
Confidence 43310 001111 136899999999986432 11 11334444566666645667
Q ss_pred EEEeCCCCCC
Q 035873 253 FFLDISGSCG 262 (275)
Q Consensus 253 ~viD~s~~~g 262 (275)
+|+|++....
T Consensus 168 ~v~d~~~~~~ 177 (299)
T 2aka_B 168 AVSPANSDLA 177 (299)
T ss_dssp EEEESSSCGG
T ss_pred EEecCCcchh
Confidence 8999986543
No 41
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=1.4e-12 Score=122.86 Aligned_cols=95 Identities=22% Similarity=0.296 Sum_probs=64.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHH----HHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIE----MCS 240 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e----~~~ 240 (275)
....+|+++|.||||||||+|+|+|... .++++|+||.++..+.+.+++..+.+|||||+...........+ ..+
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 3467999999999999999999999875 48999999999999999999999999999998532211101111 123
Q ss_pred HHHHHhccceeEEEEeCCCCC
Q 035873 241 ITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~~~ 261 (275)
...++.. |++++|+|++...
T Consensus 258 ~~~i~~a-d~vllv~d~~~~~ 277 (439)
T 1mky_A 258 VDSIEKA-DVVVIVLDATQGI 277 (439)
T ss_dssp HHHHHHC-SEEEEEEETTTCC
T ss_pred HHHHhhC-CEEEEEEeCCCCC
Confidence 3455555 9999999998643
No 42
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=106.84 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=63.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........|+++.+.....+.+++ ..+.+|||||..+..... ...+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 79 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT--------STYY 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC--------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH--------HHHh
Confidence 457899999999999999999999887777777788888888888877 578999999954322211 1233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 80 ~~~-d~~i~v~d~~~~ 94 (181)
T 3tw8_B 80 RGT-HGVIVVYDVTSA 94 (181)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECCCH
Confidence 444 999999999964
No 43
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.36 E-value=1.4e-12 Score=107.74 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=60.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--------------------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-------------------------------- 214 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-------------------------------- 214 (275)
...+|+++|.+|||||||+|+|++........|+++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 457899999999999999999998876544444444555555555554
Q ss_pred -------eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 215 -------LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 215 -------~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
..+.+|||||..+... .....++.. |++++|+|++++
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~-d~~i~v~D~~~~ 129 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS--------IVPLYYRGA-TCAIVVFDISNS 129 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT--------THHHHHTTC-SEEEEEEETTCH
T ss_pred ccCccceeEEEEEECCCcHHHHH--------HHHHHhcCC-CEEEEEEECCCH
Confidence 6789999999543211 123445555 999999999854
No 44
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.36 E-value=9.3e-12 Score=102.57 Aligned_cols=104 Identities=17% Similarity=0.097 Sum_probs=68.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc--hhHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED--HNIIEMCSIT 242 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~~e~~~~~ 242 (275)
...++|+++|.+|||||||+|+|++... ...+.+++|....... .+.++.+|||||+....... ...+......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3457899999999999999999998874 3677777787765433 24578999999976544332 1222222223
Q ss_pred HHHhc--cceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 243 ALAHL--RSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 243 ~l~~~--~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.++.. .|++++|+|++..........++.+
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~ 129 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM 129 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHH
Confidence 34433 3889999999865444333333333
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=108.05 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=66.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........++++.+.....+.+++ ..+++|||||..+.. ......+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~ 86 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR--------TITSSYY 86 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC--------TTHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh--------hhHHHHH
Confidence 457899999999999999999998887777777778788778888876 468999999954221 1123445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 87 ~~~-d~~i~v~d~~~~ 101 (196)
T 3tkl_A 87 RGA-HGIIVVYDVTDQ 101 (196)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred hhC-CEEEEEEECcCH
Confidence 555 999999999964
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=3.2e-12 Score=107.27 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=65.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........|+++.+.....+.+++ ..+++|||||..+.... ....+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI--------TTAYY 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC--------CHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--------HHHHh
Confidence 457899999999999999999998887666667777777777777777 57899999995432111 13345
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 91 ~~~-d~ii~v~d~~~~ 105 (213)
T 3cph_A 91 RGA-MGIILVYDVTDE 105 (213)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECCCH
Confidence 555 999999999864
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.34 E-value=2.3e-12 Score=104.86 Aligned_cols=85 Identities=15% Similarity=0.069 Sum_probs=62.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC---eeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
...+|+++|.+|||||||+|+|++........|+++.+.....+.+++ ..+++|||||...... .....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~ 76 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK--------MLDKY 76 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT--------THHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc--------hhhHH
Confidence 456899999999999999999998765433345555667777777765 6889999999653221 11234
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|++++
T Consensus 77 ~~~~-d~~i~v~d~~~~ 92 (178)
T 2hxs_A 77 IYGA-QGVLLVYDITNY 92 (178)
T ss_dssp HTTC-SEEEEEEETTCH
T ss_pred HhhC-CEEEEEEECCCH
Confidence 5555 999999999864
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.34 E-value=1.6e-12 Score=106.67 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=62.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........++++.+.....+.+++ ..+.+|||||..+ ........+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 80 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER--------FRSVTRSYY 80 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG--------GHHHHHTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH--------HHHHHHHHH
Confidence 457899999999999999999998877666666666666666666766 4789999999432 122223334
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 81 ~~~-d~~i~v~d~~~~ 95 (186)
T 2bme_A 81 RGA-AGALLVYDITSR 95 (186)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred hcC-CEEEEEEECcCH
Confidence 444 999999999864
No 49
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.34 E-value=3.9e-12 Score=102.20 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=62.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........|+.+.+.....+.+++. .+++|||||..+.... ....+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--------TKAYY 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--------CHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--------HHHHh
Confidence 3568999999999999999999987765555555556666666666654 7899999995432211 12344
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 76 ~~~-d~~i~v~d~~~~ 90 (168)
T 1z2a_A 76 RGA-QACVLVFSTTDR 90 (168)
T ss_dssp TTC-CEEEEEEETTCH
T ss_pred cCC-CEEEEEEECcCH
Confidence 554 999999999864
No 50
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.33 E-value=5.3e-12 Score=104.49 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=60.8
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
....+|+++|.+|||||||+|+|.+........| |.+.....+.+.+..+++|||||.. .+.......++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~ 89 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQP--------RFRSMWERYCR 89 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETTEEEEEEEECCSH--------HHHTTHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEEEeCCEEEEEEECCCCH--------hHHHHHHHHHc
Confidence 3457899999999999999999998765533333 4444455667778899999999953 12222234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|+++.
T Consensus 90 ~~-d~ii~v~D~~~~ 103 (188)
T 1zd9_A 90 GV-SAIVYMVDAADQ 103 (188)
T ss_dssp TC-SEEEEEEETTCG
T ss_pred cC-CEEEEEEECCCH
Confidence 55 999999999864
No 51
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=3.4e-12 Score=102.63 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=59.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||+|+|.+........|+.+.......+.+++. .+.+|||||..+. .......++.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~ 75 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF--------ASLAPXYYRN 75 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG--------GGGHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh--------hhhhhhhhcc
Confidence 57999999999999999999987765444455555555555666554 7899999995321 1122344555
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|++++
T Consensus 76 ~-d~~i~v~d~~~~ 88 (170)
T 1ek0_A 76 A-QAALVVYDVTKP 88 (170)
T ss_dssp C-SEEEEEEETTCH
T ss_pred C-cEEEEEEecCCh
Confidence 5 999999999864
No 52
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.32 E-value=3.6e-12 Score=106.01 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||+|+|++........++.+.+.....+.+++ ..+++|||||..+ ........
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~ 95 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER--------FNSITSAY 95 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG--------GHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH--------HHHHHHHH
Confidence 3456899999999999999999998876655556666666666777766 3689999999431 22233455
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|+++.
T Consensus 96 ~~~~-d~iilV~D~~~~ 111 (192)
T 2il1_A 96 YRSA-KGIILVYDITKK 111 (192)
T ss_dssp HHHC-SEEEEEEETTCH
T ss_pred hcCC-CEEEEEEECcCH
Confidence 5665 999999999864
No 53
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.32 E-value=1.7e-12 Score=115.72 Aligned_cols=64 Identities=33% Similarity=0.412 Sum_probs=42.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
....+++++|.||||||||+|+|++.+ ..+++.|++|++.... .. +..+.++||||+.+.....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~~~~~~ 182 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV--KV-GKELELLDTPGILWPKFED 182 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCE--EE-TTTEEEEECCCCCCSCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEE--Ee-CCCEEEEECcCcCCCCCCC
Confidence 456789999999999999999999988 5689999999887532 22 4579999999998876554
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.32 E-value=3e-12 Score=103.12 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=58.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|.+........|+++.+.....+.+++ ..+.+|||||..+.... ....++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 74 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--------TTAYYR 74 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--------CHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--------HHHHhc
Confidence 45899999999999999999998887666666667677667777665 36899999995432211 123445
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 75 ~~-d~~i~v~d~~~~ 88 (170)
T 1g16_A 75 GA-MGIILVYDITDE 88 (170)
T ss_dssp TE-EEEEEEEETTCH
T ss_pred cC-CEEEEEEECCCH
Confidence 54 999999999854
No 55
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.32 E-value=2.9e-12 Score=104.05 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=63.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|.+........++++.+.....+.+++. .+.+|||||..+.. . .....++
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~----~~~~~~~ 85 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----S----LIPSYIR 85 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG----G----GSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH----H----HHHHHhc
Confidence 368999999999999999999988776666666776777777777664 78999999953211 1 1123455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 86 ~~-d~~i~v~d~~~~ 99 (179)
T 2y8e_A 86 DS-TVAVVVYDITNT 99 (179)
T ss_dssp TC-SEEEEEEETTCH
T ss_pred CC-CEEEEEEECCCH
Confidence 54 999999999854
No 56
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.31 E-value=5.5e-12 Score=104.26 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=62.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHH-HHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIE-MCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e-~~~~~~ 243 (275)
...+|+++|.+|||||||+|+|.+........++.+.+.....+.+++ ..+++|||||.. .+. ......
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~ 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE--------RFRKSMVQHY 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH--------HHHTTTHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch--------hhhhhhhHHH
Confidence 457899999999999999999998776555555556566666666666 478999999942 121 122344
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|+++.
T Consensus 91 ~~~~-d~iilv~D~~~~ 106 (189)
T 1z06_A 91 YRNV-HAVVFVYDMTNM 106 (189)
T ss_dssp HTTC-CEEEEEEETTCH
T ss_pred hcCC-CEEEEEEECcCH
Confidence 5555 999999999864
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.31 E-value=1.1e-11 Score=100.73 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||+|+|++... ...++.|+.......+.+++. .+.+|||||..+.... ....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~ 77 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM--------REQY 77 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC--------HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH--------HHHH
Confidence 3567999999999999999999997754 345556666665666667664 6789999996542211 1234
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|+++.
T Consensus 78 ~~~~-d~~i~v~d~~~~ 93 (181)
T 2fn4_A 78 MRAG-HGFLLVFAINDR 93 (181)
T ss_dssp HHHC-SEEEEEEETTCH
T ss_pred HhhC-CEEEEEEeCCCH
Confidence 4554 999999999864
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.31 E-value=3.2e-12 Score=103.87 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=59.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........|+.+.+.....+.+++. .+.+|||||..+ ........+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER--------FRSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG--------GHHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh--------hhhhHHHHH
Confidence 3568999999999999999999988776555566666666667777664 789999999431 122222333
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+. +|++++|+|+++.
T Consensus 78 ~~-~~~~i~v~d~~~~ 92 (177)
T 1wms_A 78 RG-SDCCLLTFSVDDS 92 (177)
T ss_dssp TT-CSEEEEEEETTCH
T ss_pred hc-CCEEEEEEECcCH
Confidence 44 4999999999854
No 59
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=7e-12 Score=103.42 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=57.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|++.... ...| |.+.....+.+++..+++|||||..+... .....++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 83 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVINNTRFLMWDIGGQESLRS--------SWNTYYTN 83 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEETTEEEEEEECCC----CG--------GGHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEECCEEEEEEECCCCHhHHH--------HHHHHhcC
Confidence 4568999999999999999999976654 2222 33444566677888999999999753221 11234455
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|++++
T Consensus 84 ~-d~ii~v~d~~~~ 96 (187)
T 1zj6_A 84 T-EFVIVVVDSTDR 96 (187)
T ss_dssp C-CEEEEEEETTCT
T ss_pred C-CEEEEEEeCCCH
Confidence 4 999999999965
No 60
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.31 E-value=6.3e-12 Score=100.86 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=58.1
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
+|+++|.+|||||||+|+|.+.... ...| |.+.....+.+++..+++|||||..+ +.......++.. |
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~-d 69 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT-Q 69 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGG--------GHHHHHHHTTTC-S
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChh--------hHHHHHHHhccC-C
Confidence 6899999999999999999876643 2233 44455667777788999999999642 122223344554 9
Q ss_pred eeEEEEeCCCC
Q 035873 250 AVLFFLDISGS 260 (275)
Q Consensus 250 ~il~viD~s~~ 260 (275)
++++|+|++++
T Consensus 70 ~~i~v~d~~~~ 80 (164)
T 1r8s_A 70 GLIFVVDSNDR 80 (164)
T ss_dssp EEEEEEETTCG
T ss_pred EEEEEEECCCH
Confidence 99999999965
No 61
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.31 E-value=9.7e-12 Score=99.55 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|.+... ...++.|+.......+.+++. .+.+|||||..+ ........++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 74 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED--------YAAIRDNYFR 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch--------hHHHHHHHhh
Confidence 46899999999999999999998764 344455565555555666654 688999999542 1122234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|+++.
T Consensus 75 ~~-d~~i~v~d~~~~ 88 (168)
T 1u8z_A 75 SG-EGFLCVFSITEM 88 (168)
T ss_dssp HC-SEEEEEEETTCH
T ss_pred cC-CEEEEEEECCCH
Confidence 55 999999999954
No 62
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.31 E-value=5e-12 Score=103.99 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|++.. ...+. .|.+.....+.+++..+++|||||..+ ........++.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ 85 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKS--------LRSYWRNYFES 85 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETTEEEEEEEECCSHH--------HHTTGGGGCTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECCEEEEEEECCCCHh--------HHHHHHHHhcC
Confidence 45789999999999999999999877 22222 244566677778888999999999632 11111223334
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
+|++++|+|++++
T Consensus 86 -~d~ii~v~d~~~~ 98 (186)
T 1ksh_A 86 -TDGLIWVVDSADR 98 (186)
T ss_dssp -CSEEEEEEETTCG
T ss_pred -CCEEEEEEECcCH
Confidence 4999999999965
No 63
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.31 E-value=1.1e-11 Score=102.25 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=60.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
....+|+++|.+|||||||+++|.+.... .+ ..|.+.....+.+++..+++|||||... +.......++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~ 82 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS--HI-TPTQGFNIKSVQSQGFKLNVWDIGGQRK--------IRPYWRSYFE 82 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE--EE-EEETTEEEEEEEETTEEEEEEECSSCGG--------GHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC--cc-cCcCCeEEEEEEECCEEEEEEECCCCHH--------HHHHHHHHhC
Confidence 45679999999999999999999987543 11 1234445566777888999999999532 1222234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|+++.
T Consensus 83 ~~-~~~i~v~d~~~~ 96 (181)
T 1fzq_A 83 NT-DILIYVIDSADR 96 (181)
T ss_dssp TC-SEEEEEEETTCG
T ss_pred CC-CEEEEEEECcCH
Confidence 54 999999999864
No 64
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.31 E-value=6.8e-12 Score=101.84 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=59.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........++++.+.....+..++ ..+.+|||||..+ ........+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER--------FRAVTRSYY 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG--------TCHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH--------hhhhHHHHh
Confidence 457899999999999999999998776433333334444445555554 4689999999432 112234556
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 86 ~~~-d~~i~v~d~~~~ 100 (179)
T 1z0f_A 86 RGA-AGALMVYDITRR 100 (179)
T ss_dssp HTC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEeCcCH
Confidence 665 999999999864
No 65
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.30 E-value=6.1e-12 Score=105.40 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........|+.+.+.....+.+++. .+++|||||..+..... ...+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT--------SSYY 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC--------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH--------HHhc
Confidence 3568999999999999999999988876666677777777677777664 78999999965432211 1233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 79 ~~~-d~vilv~d~~~~ 93 (206)
T 2bcg_Y 79 RGS-HGIIIVYDVTDQ 93 (206)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred cCC-CEEEEEEECcCH
Confidence 444 999999999864
No 66
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.30 E-value=4.9e-12 Score=103.18 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++.+.......+.+++ ..+++|||||..+. .......+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~ 82 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY--------HSLAPMYY 82 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG--------GGGTHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh--------hhhhHHHh
Confidence 456899999999999999999998876544445545555555565654 47899999995321 11123345
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 83 ~~~-d~~i~v~d~~~~ 97 (181)
T 2efe_B 83 RGA-AAAIIVFDVTNQ 97 (181)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECCCH
Confidence 555 999999999854
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.30 E-value=6.1e-12 Score=106.23 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec------------CeeEEEEeCCCCCCCCCCchh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------YLRYQVIDTPGILDRPFEDHN 234 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~ 234 (275)
...+|+++|.+|||||||+|+|++........++.+.+.....+.++ ...+++|||||. .
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--------~ 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--------E 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--------H
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc--------H
Confidence 45789999999999999999999877654444443444444445554 357899999993 2
Q ss_pred HHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 235 IIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 235 ~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.+.......++.. |+++||+|+++. .+......++.
T Consensus 96 ~~~~~~~~~~~~~-d~iilV~D~~~~--~s~~~~~~~l~ 131 (217)
T 2f7s_A 96 RFRSLTTAFFRDA-MGFLLMFDLTSQ--QSFLNVRNWMS 131 (217)
T ss_dssp HHHHHHHHHHTTC-CEEEEEEETTCH--HHHHHHHHHHH
T ss_pred hHHhHHHHHhcCC-CEEEEEEECcCH--HHHHHHHHHHH
Confidence 3333344555655 999999999853 33444334444
No 68
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.30 E-value=6.3e-12 Score=121.78 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEE----------------------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGH---------------------------------- 209 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~---------------------------------- 209 (275)
..+.|+++|.+|||||||+|+|++.++. +++.|+|+......+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4679999999999999999999998863 777887765321111
Q ss_pred --EEecC---eeEEEEeCCCCCCCCCCchhH---HHHHHHHHHHhccceeEEEEeCCCC-CCCCHHHHHH
Q 035873 210 --TDYKY---LRYQVIDTPGILDRPFEDHNI---IEMCSITALAHLRSAVLFFLDISGS-CGYSIAQQAA 270 (275)
Q Consensus 210 --~~~~~---~~~~liDTpG~~~~~~~~~~~---~e~~~~~~l~~~~d~il~viD~s~~-~g~~~~~q~~ 270 (275)
+.+.+ .++.+|||||+.+......+. +...+...+..+ |++|||+|++.. ........++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~a-D~il~VvDa~~~~~~~~~~~~l~ 212 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV-DLIILLFDAHKLEISDEFSEAIG 212 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHC-SEEEEEEETTSCCCCHHHHHHHH
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhC-CEEEEEEeCCcCCCCHHHHHHHH
Confidence 00111 368999999998632211111 223344556665 999999999863 3333333333
No 69
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=4.5e-12 Score=103.30 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=59.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
...+|+++|.+|||||||+|+|++.... ....|+++.+.....+..++. .+++|||||..+. .......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------~~~~~~~ 80 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF--------RSVTHAY 80 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHHHHH
Confidence 4568999999999999999999988764 344455566665555566664 7899999995421 1112233
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|++++
T Consensus 81 ~~~~-d~ii~v~d~~~~ 96 (180)
T 2g6b_A 81 YRDA-HALLLLYDVTNK 96 (180)
T ss_dssp GGGC-SEEEEEEETTCH
T ss_pred ccCC-CEEEEEEECCCH
Confidence 4444 999999999864
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.29 E-value=1.2e-11 Score=101.41 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=60.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCee--EEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|++... ...+++|+.......+.+++.. +.+|||||..+... .....++
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 74 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------MRDQYMR 74 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT--------THHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH--------HHHHHHh
Confidence 46899999999999999999997664 4555667767767777777654 67899999653221 1123445
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 75 ~~-~~~i~v~d~~~~ 88 (189)
T 4dsu_A 75 TG-EGFLCVFAINNT 88 (189)
T ss_dssp HC-SEEEEEEETTCH
T ss_pred cC-CEEEEEEECCCH
Confidence 54 999999999864
No 71
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.29 E-value=6.9e-12 Score=105.23 Aligned_cols=85 Identities=11% Similarity=0.130 Sum_probs=57.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........++.+.+.....+.+++ ..+++|||||..+ +.......+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~ 99 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER--------FRTITQSYY 99 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG--------GHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh--------HHHHHHHHH
Confidence 457899999999999999999998776544444444556666677766 4789999999531 222234455
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 100 ~~~-d~iilv~D~~~~ 114 (201)
T 2hup_A 100 RSA-NGAILAYDITKR 114 (201)
T ss_dssp TTC-SEEEEEEETTBH
T ss_pred hhC-CEEEEEEECCCH
Confidence 555 999999999854
No 72
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.29 E-value=4.4e-12 Score=105.18 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=59.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
....+|+++|.+|||||||+|+|++.......+.. |.+.....+...+..+++|||||..+.. . .....++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~----~----~~~~~~~ 85 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFR----G----LWETYYD 85 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGG----G----GGGGGCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHH----H----HHHHHHh
Confidence 45679999999999999999999988866522322 4446666677778899999999974311 1 1112334
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++|+|+|+++.
T Consensus 86 ~~-d~ii~v~D~~~~ 99 (199)
T 4bas_A 86 NI-DAVIFVVDSSDH 99 (199)
T ss_dssp TC-SEEEEEEETTCG
T ss_pred cC-CEEEEEEECCcH
Confidence 44 999999999964
No 73
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.29 E-value=1.1e-11 Score=111.47 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=66.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC-cccccCCCcccceEEEEEEe-cCeeEEEEeCCCCCCCCCCchhHH-HHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDHNII-EMCSITAL 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~-e~~~~~~l 244 (275)
..+|+++|.+|||||||+|+|++.. ..+.+++++|.+...+.+.+ ++..+++|||||..+. +..+ .......+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF----MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH----HHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH----hhhhhhhHHHHHh
Confidence 4589999999999999999988774 45677889999999998886 5678999999995321 0000 12223444
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
+.. |++++|+|+++..
T Consensus 79 ~~a-d~vi~V~D~t~~~ 94 (307)
T 3r7w_A 79 QMV-QVLIHVFDVESTE 94 (307)
T ss_dssp TTC-SEEEEEEETTCSC
T ss_pred ccC-CEEEEEEECCChh
Confidence 554 9999999999653
No 74
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.29 E-value=3.8e-12 Score=123.89 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe-------cCeeEEEEeCCCCCCCCC-CchhHH
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-------KYLRYQVIDTPGILDRPF-EDHNII 236 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~-------~~~~~~liDTpG~~~~~~-~~~~~~ 236 (275)
.....+|+++|.||||||||+|+|+|....+ +.++||.+.+.+.+.| .+..+.++||||+.+... +.....
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 3456789999999999999999999987544 6667776766666655 457899999999987543 333444
Q ss_pred HHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 237 EMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 237 e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
+..++..+-. + ++|+|+++.........+.++
T Consensus 114 ~~fala~lls--s--~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 114 WIFALAVLLS--S--TFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHHHHHHHHC--S--EEEEEEESCSSHHHHHTTHHH
T ss_pred HHHHHHHHhc--C--eEEEECCCCccHHHHHHHHHH
Confidence 4444443322 2 577787766555555555543
No 75
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.28 E-value=9.2e-12 Score=104.17 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=64.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||+|+|++........|+++.+.....+.+++. .+++|||||.... ... .....
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~---~~~~~ 93 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA----GGW---LRDHC 93 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG----GHH---HHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc----hhh---hHHHh
Confidence 35679999999999999999999876655566677788877777777765 5688999997531 111 11233
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|+++.
T Consensus 94 ~~~~-d~~ilv~d~~~~ 109 (195)
T 3cbq_A 94 LQTG-DAFLIVFSVTDR 109 (195)
T ss_dssp HHHC-SEEEEEEETTCH
T ss_pred hccC-CEEEEEEECCCH
Confidence 4544 999999999864
No 76
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=102.83 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+... ...+++|+.......+.+++. .+.+|||||..+. .......+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 83 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AAIRDNYF 83 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--------HHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh--------HHHHHHHH
Confidence 457899999999999999999997764 345666666666666667664 6889999995431 11223445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 84 ~~~-~~~i~v~d~~~~ 98 (206)
T 2bov_A 84 RSG-EGFLCVFSITEM 98 (206)
T ss_dssp HHC-SEEEEEEETTCH
T ss_pred hhC-CEEEEEEECCCH
Confidence 555 999999999864
No 77
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.28 E-value=6.3e-12 Score=103.27 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=58.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceE-EEEEEecC-----------eeEEEEeCCCCCCCCCCchh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLF-VGHTDYKY-----------LRYQVIDTPGILDRPFEDHN 234 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~-~~~~~~~~-----------~~~~liDTpG~~~~~~~~~~ 234 (275)
...+|+++|.+|||||||+|+|.+........++.+.+.. ...+.+.+ ..+++|||||..+
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------
Confidence 3568999999999999999999987765444443333333 33444443 4789999999631
Q ss_pred HHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 235 IIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 235 ~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
........++.. |++++|+|++++
T Consensus 83 -~~~~~~~~~~~~-d~~i~v~d~~~~ 106 (195)
T 3bc1_A 83 -FRSLTTAFFRDA-MGFLLLFDLTNE 106 (195)
T ss_dssp -GHHHHHHTTTTC-SEEEEEEETTCH
T ss_pred -HHHHHHHHHcCC-CEEEEEEECCCH
Confidence 222233444554 999999999854
No 78
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.28 E-value=1.5e-11 Score=108.55 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccC--------CCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCc---h
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPY--------AFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFED---H 233 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~--------~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~---~ 233 (275)
...+|+++|.+|+|||||+|+|++.+.....+ ++++.......+.+++. .+.+|||||+.+...+. .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 34689999999999999999999888765554 33333333344444443 78999999996543221 1
Q ss_pred hH---HHHHHHHHHHh------------ccceeEEEEeCCCC
Q 035873 234 NI---IEMCSITALAH------------LRSAVLFFLDISGS 260 (275)
Q Consensus 234 ~~---~e~~~~~~l~~------------~~d~il~viD~s~~ 260 (275)
.. ++.+....+.+ -.|+++|++|++..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~ 128 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 128 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC
Confidence 11 11111333443 13689999987753
No 79
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.28 E-value=1.5e-11 Score=98.32 Aligned_cols=83 Identities=11% Similarity=0.122 Sum_probs=57.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|.+..... .+..++.......+.+++. .+.+|||||..+ . .......++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~----~~~~~~~~~ 73 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ----F----ASMRDLYIK 73 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC----C----HHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchh----h----HHHHHHHhc
Confidence 3589999999999999999999776542 3334444544555666654 488999999542 1 112234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 74 ~~-~~~i~v~d~~~~ 87 (167)
T 1kao_A 74 NG-QGFILVYSLVNQ 87 (167)
T ss_dssp HC-SEEEEEEETTCH
T ss_pred cC-CEEEEEEeCCCH
Confidence 55 999999999854
No 80
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.28 E-value=7.4e-12 Score=100.99 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=60.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|.+.... ...| |.+.....+.+++..+++|||||..+.. . .....++.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~----~~~~~~~~ 74 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIR----P----YWRCYYSN 74 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGG----G----GGGGGCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCC--cCccceEEEEECCEEEEEEECCCChhhh----H----HHHHHhcc
Confidence 4568999999999999999999876643 2222 4456667778888899999999964311 1 11123344
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|++++.
T Consensus 75 ~-d~ii~v~d~~~~~ 88 (171)
T 1upt_A 75 T-DAVIYVVDSCDRD 88 (171)
T ss_dssp C-SEEEEEEETTCCT
T ss_pred C-CEEEEEEECCCHH
Confidence 4 9999999999654
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.28 E-value=4.3e-12 Score=104.27 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
....+|+++|.+|||||||+|+|.+.... ..+ |.+.....+.+++..+++|||||..+.... ....+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 86 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRSS--------WNTYY 86 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC----CSSSSCEEEEETTEEEEEEEESSSGGGTCG--------GGGGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCC----cCceeeEEEEECCEEEEEEECCCCHhHHHH--------HHHHh
Confidence 45679999999999999999999988762 222 233334566778889999999997432111 12234
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 87 ~~~-d~ii~v~D~~~~ 101 (181)
T 2h17_A 87 TNT-EFVIVVVDSTDR 101 (181)
T ss_dssp TTC-CEEEEEEETTCT
T ss_pred ccC-CEEEEEEECCCH
Confidence 444 999999999965
No 82
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.28 E-value=3.4e-12 Score=106.90 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=55.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........++.+.+.....+.+++ ..+++|||||..+ ........+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~ 95 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER--------FRSVTRSYY 95 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH--------HSCCCHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh--------HHHHHHHHh
Confidence 457899999999999999999998877655566666666666676766 5789999999432 111123445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 96 ~~~-d~~i~v~d~~~~ 110 (200)
T 2o52_A 96 RGA-AGALLVYDITSR 110 (200)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECcCH
Confidence 555 999999999864
No 83
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.28 E-value=8.6e-12 Score=100.37 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=56.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|.+........|..........+.+.+ ..+.+|||||..+. .......++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~ 77 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF--------RALAPMYYR 77 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------GGGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh--------hcccHhhCc
Confidence 46899999999999999999998875432223222233334444544 57899999996321 111233455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 78 ~~-~~~i~v~d~~~~ 91 (170)
T 1z0j_A 78 GS-AAAIIVYDITKE 91 (170)
T ss_dssp TC-SEEEEEEETTCH
T ss_pred CC-CEEEEEEECcCH
Confidence 55 999999999864
No 84
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.28 E-value=1.5e-11 Score=100.47 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+... ...++.|+.......+.+++. .+.+|||||..+ . .......+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~----~~~~~~~~ 87 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED----Y----AAIRDNYF 87 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC----C----HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc----c----HHHHHHHh
Confidence 346899999999999999999997764 345556666666666666664 688999999543 1 11223455
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 88 ~~~-d~~i~v~d~~~~ 102 (187)
T 2a9k_A 88 RSG-EGFLCVFSITEM 102 (187)
T ss_dssp HHC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECcCH
Confidence 555 999999999854
No 85
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.27 E-value=1.1e-11 Score=102.70 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=59.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........++.+.+.....+.+++. .+++|||||..+.... ....+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 91 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--------TRSYY 91 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--------CHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--------HHHHh
Confidence 4568999999999999999999988766555555566666666677654 7899999995432211 12345
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 92 ~~~-d~ii~v~d~~~~ 106 (191)
T 2a5j_A 92 RGA-AGALLVYDITRR 106 (191)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECCCH
Confidence 554 999999999864
No 86
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.27 E-value=9.8e-12 Score=99.89 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=56.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|++........+..+.......+.++ +..+++|||||..+. .......++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~ 77 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY--------HSLAPMYYR 77 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG--------GGGHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh--------hhhhHHhcc
Confidence 4689999999999999999999776543333333333333444444 347899999995321 111234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 78 ~~-d~~i~v~d~~~~ 91 (170)
T 1r2q_A 78 GA-QAAIVVYDITNE 91 (170)
T ss_dssp TC-SEEEEEEETTCH
T ss_pred CC-CEEEEEEECCCH
Confidence 55 999999999854
No 87
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.27 E-value=4.1e-12 Score=102.46 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=58.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........|+.+.+.....+.+++. .+++|||||..+.. ......+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 76 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH--------ALGPIYY 76 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------------CCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh--------hhHHHHh
Confidence 3468999999999999999999988765555565565665566666554 67889999954211 1111223
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 77 ~~~-d~~i~v~d~~~~ 91 (170)
T 1z08_A 77 RDS-NGAILVYDITDE 91 (170)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECcCH
Confidence 343 999999999864
No 88
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.27 E-value=3e-12 Score=104.20 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-C--eeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
...+|+++|.+|||||||+|+|.+........|+.+.+.....+.++ + ..+++|||||..+ ........
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 78 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER--------FQSLGVAF 78 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------CC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH--------hhhhhHHH
Confidence 45689999999999999999999877655555555566666666665 2 4789999999432 11111223
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|++++
T Consensus 79 ~~~~-d~~i~v~d~~~~ 94 (182)
T 1ky3_A 79 YRGA-DCCVLVYDVTNA 94 (182)
T ss_dssp STTC-CEEEEEEETTCH
T ss_pred hhcC-CEEEEEEECCCh
Confidence 3444 999999999864
No 89
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.27 E-value=1.2e-12 Score=107.35 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=43.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|++........|+++.+.....+.+++ ..+++|||||..+.. ......++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 79 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYR 79 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------CCTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh--------hhHHHHHh
Confidence 46899999999999999999998776555556666666666677766 578999999964311 11112334
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 80 ~~-d~~i~v~d~~~~ 93 (183)
T 2fu5_C 80 GA-MGIMLVYDITNE 93 (183)
T ss_dssp TC-SEEEEEEETTCH
T ss_pred cC-CEEEEEEECcCH
Confidence 44 999999999864
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.27 E-value=2.1e-11 Score=101.46 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=58.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
....+|+++|.+|||||||+|+|.+.... ...| |.+.....+.+++..+.+|||||..+... .....++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 95 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRP--------LWRHYFQ 95 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----CT--------THHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHH--------HHHHHhc
Confidence 35678999999999999999999876643 2223 55566677778888999999999753211 1223455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 96 ~~-d~iilv~D~~~~ 109 (192)
T 2b6h_A 96 NT-QGLIFVVDSNDR 109 (192)
T ss_dssp TC-CEEEEEEETTCG
T ss_pred cC-CEEEEEEECCCH
Confidence 55 999999999865
No 91
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.27 E-value=1.7e-11 Score=116.64 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccc
Q 035873 46 FYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYC 125 (275)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~ 125 (275)
.+..++.+++++|.+.|.+++.+ ..+++ +++++|.+.|+..|. .+..+...++.+...... ..+..
T Consensus 198 ~l~~~l~kt~~~l~~~l~~~~~~-~~ide--~~l~el~~~Ll~aDv------~~~~~~~l~~~l~~~~~~-----~~~~~ 263 (503)
T 2yhs_A 198 RLKRSLLKTKENLGSGFISLFRG-KKIDD--DLFEELEEQLLIADV------GVETTRKIITNLTEGASR-----KQLRD 263 (503)
T ss_dssp HHHHHTHHHHTTSTTHHHHHHTT-CBCSH--HHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHH-----HTCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCCH--HHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHh-----ccCCC
Confidence 46678899999999999999975 66777 799999999998885 223344444444332221 11112
Q ss_pred hhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhc------CCcccccCC
Q 035873 126 CKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITR------ADVDVQPYA 199 (275)
Q Consensus 126 ~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~~ 199 (275)
...+++.+...+..++... ...+...-.....++++|.+|+|||||+++|.+ ..+.+...+
T Consensus 264 ~~~~~~~l~~~l~~~l~~~-------------~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 264 AEALYGLLKEEMGEILAKV-------------DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp GGGHHHHHHHHHHHHHHTT-------------BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCCC-------------CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 2333333333333222111 001111112455899999999999999999974 333332221
Q ss_pred Cccc-----------ceEEEEEE-------------------ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH----
Q 035873 200 FTTK-----------SLFVGHTD-------------------YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA---- 245 (275)
Q Consensus 200 ~tT~-----------~~~~~~~~-------------------~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~---- 245 (275)
.... ....+.+. ..+.++.++||+|..++....+.++.+. ....+
T Consensus 331 ~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~ki-v~iar~l~~ 409 (503)
T 2yhs_A 331 TFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI-VRVMKKLDV 409 (503)
T ss_dssp TTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHH-HHHHHTTCT
T ss_pred ccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHH-HHHHHHhcc
Confidence 1110 00011110 1235788999999987654444444322 22222
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
..++-+|+|+|++ +|++..+|++.|++
T Consensus 410 ~~P~evLLvLDat--tGq~al~~ak~f~~ 436 (503)
T 2yhs_A 410 EAPHEVMLTIDAS--TGQNAVSQAKLFHE 436 (503)
T ss_dssp TCSSEEEEEEEGG--GTHHHHHHHHHHHH
T ss_pred CCCCeeEEEecCc--ccHHHHHHHHHHHh
Confidence 2256799999998 78898899888764
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.27 E-value=6.1e-12 Score=104.06 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
....+|+++|.+|||||||+|+|.+.......+. .|.+.....+.+++..+.+|||||..+.. .. ....++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~----~~~~~~ 89 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSGQGRYR----NL----WEHYYK 89 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSSCEEEEEEECCSTTTG----GG----GGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECCEEEEEEECCCCHHHH----HH----HHHHHh
Confidence 3567999999999999999999998774333333 45567777788888899999999964321 11 123344
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
+. |++++|+|+++.
T Consensus 90 ~~-d~ii~v~d~~~~ 103 (190)
T 2h57_A 90 EG-QAIIFVIDSSDR 103 (190)
T ss_dssp GC-SEEEEEEETTCH
T ss_pred cC-CEEEEEEECCCH
Confidence 44 999999999854
No 93
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.26 E-value=1.2e-11 Score=99.63 Aligned_cols=84 Identities=13% Similarity=-0.002 Sum_probs=52.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||+|+|++........+++|.+.....+.+++. .+++|||||..+.... .....++.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~ 75 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW-------LQDHCLQT 75 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------------CHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------hhhhhhcc
Confidence 57999999999999999999987766555556677777777777764 5679999997542211 11123444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|++++
T Consensus 76 ~-d~~i~v~d~~~~ 88 (169)
T 3q85_A 76 G-DAFLIVFSVTDR 88 (169)
T ss_dssp C-SEEEEEEETTCH
T ss_pred C-CEEEEEEECCCh
Confidence 4 999999999864
No 94
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=6.9e-12 Score=105.69 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=63.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+........++.+.+.....+.+++. .+++|||||.. .+.......+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~ 96 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE--------RFRSITQSYY 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--------GGHHHHGGGS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHH
Confidence 3578999999999999999999988776666666666666667777764 68999999942 1222223344
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 97 ~~~-d~~i~v~D~~~~ 111 (201)
T 2ew1_A 97 RSA-NALILTYDITCE 111 (201)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred hcC-CEEEEEEECCCH
Confidence 444 999999999864
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.26 E-value=6.8e-12 Score=102.63 Aligned_cols=82 Identities=23% Similarity=0.229 Sum_probs=56.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|++.... ... .|.+.....+.+++..+.+|||||..+..... ...++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~ 85 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV-TTK--PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYW--------RCYYAD 85 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE-EEC--SSTTCCEEEEEETTEEEEEEEEC----CCTTG--------GGTTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC-ccC--CcCccceEEEEECCEEEEEEECCCCHhHHHHH--------HHHhcc
Confidence 5679999999999999999999976652 111 23445566677788899999999976432211 122344
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
+|++++|+|++++
T Consensus 86 -~d~ii~v~d~~~~ 98 (183)
T 1moz_A 86 -TAAVIFVVDSTDK 98 (183)
T ss_dssp -EEEEEEEEETTCT
T ss_pred -CCEEEEEEECCCH
Confidence 4999999999865
No 96
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=103.24 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++.+.+.....+.+++ ..+++|||||..+ +.......+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~ 98 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER--------FRSIAKSYF 98 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTT--------CHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc--------hhhhHHHHH
Confidence 457999999999999999999998775433333333334444555555 4689999999542 112234455
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 99 ~~~-d~iilv~d~~~~ 113 (199)
T 2p5s_A 99 RKA-DGVLLLYDVTCE 113 (199)
T ss_dssp HHC-SEEEEEEETTCH
T ss_pred hhC-CEEEEEEECCCh
Confidence 665 999999999854
No 97
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.26 E-value=1.5e-11 Score=102.64 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=58.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++.+.......+..++ ..+++|||||..+ ........+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 78 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER--------YRTITTAYY 78 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG--------GHHHHHTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh--------hcchHHHhh
Confidence 346899999999999999999998876544344333344444445544 4789999999632 122223444
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 79 ~~~-d~ii~v~d~~~~ 93 (203)
T 1zbd_A 79 RGA-MGFILMYDITNE 93 (203)
T ss_dssp GGC-SEEEEEEETTCH
T ss_pred cCC-CEEEEEEECcCH
Confidence 554 999999999864
No 98
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.26 E-value=1.7e-11 Score=100.26 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=60.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+... ...++.|+.......+.+++. .+++|||||..+..... ...+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP--------QTYS 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC--------GGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH--------HHHH
Confidence 356899999999999999999996663 445555666655666667664 56899999976542211 1223
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 76 ~~~-~~~i~v~d~~~~ 90 (181)
T 3t5g_A 76 IDI-NGYILVYSVTSI 90 (181)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred hcC-CEEEEEEECCCH
Confidence 444 999999999854
No 99
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=101.37 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++.+.......+.++ +..+++|||||..+... .....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 95 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--------ITSAYY 95 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------THHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHHHh
Confidence 45789999999999999999999877654333333333333444444 34679999999754221 112345
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 96 ~~~-d~vi~v~D~~~~ 110 (193)
T 2oil_A 96 RGA-VGALLVFDLTKH 110 (193)
T ss_dssp TTC-CEEEEEEETTCH
T ss_pred ccC-CEEEEEEECCCH
Confidence 555 999999999864
No 100
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.25 E-value=1.4e-11 Score=102.33 Aligned_cols=82 Identities=11% Similarity=0.188 Sum_probs=59.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|.+.... .+ ..|.+...+.+.+++..+++|||||..+.... ....++.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 90 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARRL--------WKDYFPE 90 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTTS--------GGGGCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHHH--------HHHHHhc
Confidence 3458999999999999999999987653 22 23555567788888899999999997542211 1122344
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|++++
T Consensus 91 ~-d~~i~v~d~~~~ 103 (190)
T 1m2o_B 91 V-NGIVFLVDAADP 103 (190)
T ss_dssp C-CEEEEEEETTCG
T ss_pred C-CEEEEEEECCCh
Confidence 4 999999999964
No 101
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.25 E-value=6.7e-12 Score=104.85 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++++.+.....+.+++ ..+++|||||..+..... ...+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG--------VAFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC--------CGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH--------HHHH
Confidence 456899999999999999999998876655556666666666666665 478999999954321111 1233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 79 ~~~-d~~i~v~d~~~~ 93 (207)
T 1vg8_A 79 RGA-DCCVLVFDVTAP 93 (207)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred hCC-cEEEEEEECCCH
Confidence 444 999999999864
No 102
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.2e-11 Score=105.28 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=58.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........|+.+.+.....+.+++ ..+++|||||..+..... ...+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT--------SAYY 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC--------GGGT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH--------HHHh
Confidence 346899999999999999999998877655556666666667777776 478999999965432111 1233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++|+|+|++++
T Consensus 84 ~~~-d~vilV~D~~~~ 98 (223)
T 3cpj_B 84 RGA-VGALIVYDISKS 98 (223)
T ss_dssp TTC-CEEEEEEC-CCH
T ss_pred ccC-CEEEEEEeCCCH
Confidence 444 999999999854
No 103
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=1.7e-11 Score=101.11 Aligned_cols=84 Identities=21% Similarity=0.160 Sum_probs=59.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|++........++.+.+.....+.+++ ..+.+|||||..+... .....++
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 86 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------LTPSYYR 86 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------SHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHHHhc
Confidence 46899999999999999999998876544445444455555555554 4689999999543211 1234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
+. |++++|+|++++
T Consensus 87 ~~-d~ii~v~d~~~~ 100 (195)
T 1x3s_A 87 GA-QGVILVYDVTRR 100 (195)
T ss_dssp TC-CEEEEEEETTCH
T ss_pred cC-CEEEEEEECcCH
Confidence 55 999999999864
No 104
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.24 E-value=1.5e-11 Score=103.03 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=55.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|++.... .+. .|.+...+.+.+++..+++|||||..+.... ....++.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~ 92 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAGMTFTTFDLGGHIQARRV--------WKNYLPA 92 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCG--------GGGGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECCEEEEEEECCCcHhhHHH--------HHHHHhc
Confidence 4568999999999999999999987653 121 2444446777888899999999996532211 1123444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|++++
T Consensus 93 ~-d~~i~v~D~~~~ 105 (198)
T 1f6b_A 93 I-NGIVFLVDCADH 105 (198)
T ss_dssp C-SEEEEEEETTCG
T ss_pred C-CEEEEEEECCCH
Confidence 4 999999999864
No 105
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.23 E-value=2.4e-11 Score=100.33 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=58.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++.+.+.....+...+ ..+++|||||..+..... ...+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT--------TAYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG--------GGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH--------HHhc
Confidence 357899999999999999999998876544344434344444444443 478999999965422111 2233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 93 ~~~-d~ii~v~d~~~~ 107 (189)
T 2gf9_A 93 RGA-MGFLLMYDIANQ 107 (189)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred cCC-CEEEEEEECCCH
Confidence 444 999999999854
No 106
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.23 E-value=3.7e-11 Score=97.89 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++..... +..|+.......+.+++. .+++|||||... ...+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------------~~~~ 70 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-------------AKFS 70 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-------------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch-------------hHHH
Confidence 35689999999999999999999877643 333444444555666654 578999999653 1345
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
++. |++++|+|++++.
T Consensus 71 ~~~-d~~ilv~D~~~~~ 86 (178)
T 2iwr_A 71 GWA-DAVIFVFSLEDEN 86 (178)
T ss_dssp HHC-SEEEEEEETTCHH
T ss_pred HhC-CEEEEEEECcCHH
Confidence 555 9999999999653
No 107
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.23 E-value=2e-11 Score=101.64 Aligned_cols=85 Identities=16% Similarity=0.081 Sum_probs=56.6
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||+|+|.+.. ....++.|+.......+.+++. .+++|||||..+..... ...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~ 88 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR--------PLC 88 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG--------GGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh--------Hhh
Confidence 456789999999999999999999876 3455666776666666667665 56799999976432211 123
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|++++
T Consensus 89 ~~~~-~~~i~v~d~~~~ 104 (201)
T 2q3h_A 89 YTNT-DIFLLCFSVVSP 104 (201)
T ss_dssp GTTC-SEEEEEEETTCH
T ss_pred cCCC-cEEEEEEECCCH
Confidence 3444 999999999854
No 108
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.22 E-value=2e-11 Score=100.70 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|.+.... ...| |.+.....+.+++..+++|||||..+..... ...++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~ 89 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYW--------RCYFSD 89 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCC--------SSSSTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHH--------HHHhhc
Confidence 4678999999999999999999876643 2223 4445566777888899999999975432211 112334
Q ss_pred ccceeEEEEeCCCCC
Q 035873 247 LRSAVLFFLDISGSC 261 (275)
Q Consensus 247 ~~d~il~viD~s~~~ 261 (275)
. |++++|+|++++.
T Consensus 90 ~-d~ii~v~d~~~~~ 103 (189)
T 2x77_A 90 T-DAVIYVVDSTDRD 103 (189)
T ss_dssp C-CEEEEEEETTCCT
T ss_pred C-CEEEEEEeCCCHH
Confidence 4 9999999999653
No 109
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=2.6e-11 Score=113.57 Aligned_cols=158 Identities=24% Similarity=0.337 Sum_probs=106.5
Q ss_pred chhhHHhhcccchhhhhhhhHHHHHhhhcccCccccchhh-------------HHHHHhhhHHHHHHhhCchHHHHHHHH
Q 035873 89 KDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCCKS-------------LEVAALGRMCTVVKRIGPSLAYLEQIR 155 (275)
Q Consensus 89 ~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~~~-------------~~~~~~~r~~~~~~~~~~~l~~l~~~~ 155 (275)
+.+|++.-|+.+...+....-+++.+-.++.|+.+++.+. +..+..|+.+....++....
T Consensus 60 ~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~------- 132 (416)
T 1udx_A 60 KRTYKAEDGEHGRGSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPT------- 132 (416)
T ss_dssp SSCEECCCCCCCBTTTBCCCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCSS-------
T ss_pred hceEEcCCCCCCCCCCCcCCCCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeeccc-------
Confidence 4678999999999999999999999999999988876431 00000111111111111100
Q ss_pred HHhccCCCC-----C----------CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC-eeEEE
Q 035873 156 QHMARLPSI-----D----------PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQV 219 (275)
Q Consensus 156 ~~l~~~~~~-----~----------~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~l 219 (275)
.+.|.. . .....|+++|+||||||||+|+|++..+.++.+||||..+..+.+.+++ ..+.+
T Consensus 133 ---~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l 209 (416)
T 1udx_A 133 ---RQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTL 209 (416)
T ss_dssp ---CSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEE
T ss_pred ---ccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEE
Confidence 011110 0 1134689999999999999999999999999999999999999988876 78999
Q ss_pred EeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCC
Q 035873 220 IDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDIS 258 (275)
Q Consensus 220 iDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s 258 (275)
+||||+.+......... ......+.. .+.+|+|+|++
T Consensus 210 ~DtpGli~~a~~~~~L~-~~fl~~~er-a~~lL~vvDls 246 (416)
T 1udx_A 210 ADIPGIIEGASEGKGLG-LEFLRHIAR-TRVLLYVLDAA 246 (416)
T ss_dssp EECCCCCCCGGGSCCSC-HHHHHHHTS-SSEEEEEEETT
T ss_pred Eeccccccchhhhhhhh-HHHHHHHHH-HHhhhEEeCCc
Confidence 99999986432211110 111122223 48999999997
No 110
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.22 E-value=8.4e-11 Score=107.66 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=61.6
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc------cccCCC----------------------cccce------------
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD------VQPYAF----------------------TTKSL------------ 205 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~------v~~~~~----------------------tT~~~------------ 205 (275)
...+.|+++|.+|||||||+|+|+|.+.. +...|+ +|.+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998752 333343 33220
Q ss_pred -----------EEEEEEe-cCeeEEEEeCCCCCCCCC-----CchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 206 -----------FVGHTDY-KYLRYQVIDTPGILDRPF-----EDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 206 -----------~~~~~~~-~~~~~~liDTpG~~~~~~-----~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
..-.+.. ++.++.+|||||+.+.+. +....+......++....++||+|+|++....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~ 182 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA 182 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc
Confidence 0011111 246799999999986532 11123334444566666678888999875433
No 111
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=107.63 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=63.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++++.+.....+.+++ ..+.+|||||..+..... ...+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 103 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--------SSYY 103 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS--------CC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH--------HHHh
Confidence 457999999999999999999998877666667777778778888876 468999999965432211 1234
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 104 ~~~-d~~i~v~d~~~~ 118 (199)
T 3l0i_B 104 RGA-HGIIVVYDVTDQ 118 (199)
T ss_dssp CCC-SEEEECC-CCCS
T ss_pred hcC-CEEEEEEECCCH
Confidence 444 999999999964
No 112
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=5.8e-11 Score=98.69 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++..... .+..|+.......+.+++ ..+.+|||||..+ .. .....+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~----~~~~~~ 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----TI----QREGHM 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----CH----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----cc----chhhhh
Confidence 45689999999999999999999876542 233333333344455554 4689999999765 11 123445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 97 ~~~-d~iilv~D~~~~ 111 (196)
T 2atv_A 97 RWG-EGFVLVYDITDR 111 (196)
T ss_dssp HHC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECcCH
Confidence 555 999999999864
No 113
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=1.1e-11 Score=102.84 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc--cccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~--v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
...+|+++|.+|||||||+|+|++.... ..+.++++. ....+.++ ...+++|||||..+. ......
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~ 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNELHKFLIWDTAGQERF--------HSLAPM 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSSEEEEEEEEECCSGGG--------GGGTHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCEEEEEEEEcCCCchhh--------HhhhHH
Confidence 4578999999999999999999987753 333333332 23333333 357899999995321 111233
Q ss_pred HHHhccceeEEEEeCCCC
Q 035873 243 ALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~ 260 (275)
.++.. |++++|+|++++
T Consensus 92 ~~~~~-d~iilV~d~~~~ 108 (192)
T 2fg5_A 92 YYRGS-AAAVIVYDITKQ 108 (192)
T ss_dssp HHTTC-SEEEEEEETTCT
T ss_pred hhccC-CEEEEEEeCCCH
Confidence 45555 999999999864
No 114
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.21 E-value=4.8e-11 Score=97.67 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCee--EEEEeCCCCCCCCCCchhHHHHHHH
Q 035873 164 IDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDHNIIEMCSI 241 (275)
Q Consensus 164 ~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~e~~~~ 241 (275)
......+|+++|.+|||||||+|+|++.... ..++.++..........++.. +.+|||||..+... ...
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~ 84 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA--------MRE 84 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS--------SHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH--------HHH
Confidence 3345679999999999999999999976543 334444444445666666654 56699999543211 113
Q ss_pred HHHHhccceeEEEEeCCCC
Q 035873 242 TALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~ 260 (275)
..++.. |++++|+|++++
T Consensus 85 ~~~~~~-d~~i~v~d~~~~ 102 (183)
T 3kkq_A 85 QYMRTG-DGFLIVYSVTDK 102 (183)
T ss_dssp HHHHHC-SEEEEEEETTCH
T ss_pred HHHhcC-CEEEEEEECCCH
Confidence 345555 999999999964
No 115
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.21 E-value=3.3e-11 Score=96.60 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=56.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|.+.... ..+..|+.......+.+++ ..+++|||||..+.. . .....++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~----~~~~~~~ 73 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----A----MRDLYMK 73 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----T----HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----H----HHHHHhc
Confidence 358999999999999999999986653 2333444444444444543 367899999965322 1 1223455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 74 ~~-d~~i~v~d~~~~ 87 (167)
T 1c1y_A 74 NG-QGFALVYSITAQ 87 (167)
T ss_dssp HC-SEEEEEEETTCH
T ss_pred cC-CEEEEEEECCCH
Confidence 55 999999999864
No 116
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.20 E-value=1.1e-10 Score=106.97 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEE------------------------------------
Q 035873 165 DPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG------------------------------------ 208 (275)
Q Consensus 165 ~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~------------------------------------ 208 (275)
....+.|+++|.+|||||||+|+|+|..........+|+.+..-
T Consensus 31 ~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp -CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 34667999999999999999999999765211111222111111
Q ss_pred ------------------EE-EecCeeEEEEeCCCCCCCCC-----CchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 209 ------------------HT-DYKYLRYQVIDTPGILDRPF-----EDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 209 ------------------~~-~~~~~~~~liDTpG~~~~~~-----~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
.+ ......+++|||||+.+... .....+...+..++.+. |++++|+|++.
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~-d~iilvv~~~~ 184 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKP-NCIILAISPAN 184 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSS-SEEEEEEEETT
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcC-CeEEEEeeccc
Confidence 11 11234689999999987532 22333344445556654 99999998764
No 117
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.20 E-value=1.8e-11 Score=99.05 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=51.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..+|+++|.+|||||||+|+|++.... ..+.+++ +.....+.+++. .+++|||||..... ........+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~~ 75 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE--DVYERTLTVDGEDTTLVVVDTWEAEKLD------KSWSQESCL 75 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSS--SEEEEEEEETTEEEEEEEECCC-------------CHHHHHTT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCcccc--ceeEEEEEECCEEEEEEEEecCCCCccc------hhhhHHhhc
Confidence 468999999999999999999987754 3333333 334455566654 67899999965321 011111223
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+. +|++++|+|++++
T Consensus 76 ~~-~~~~i~v~d~~~~ 90 (175)
T 2nzj_A 76 QG-GSAYVIVYSIADR 90 (175)
T ss_dssp TS-CSEEEEEEETTCH
T ss_pred cc-CCEEEEEEECCCH
Confidence 33 4999999999864
No 118
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=4.8e-11 Score=95.95 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=55.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|++........|. ...........++ ..+.+|||||..+. .......++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~ 73 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT-VEDTYRQVISCDKSICTLQITDTTGSHQF--------PAMQRLSIS 73 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCC-SCEEEEEEEEETTEEEEEEEEECCSCSSC--------HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-ccccEEEEEEECCEEEEEEEEECCCchhh--------HHHHHHhcc
Confidence 458999999999999999999987654333332 2222223333333 36899999996531 112234455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. |++++|+|++++
T Consensus 74 ~~-~~~i~v~d~~~~ 87 (172)
T 2erx_A 74 KG-HAFILVYSITSR 87 (172)
T ss_dssp HC-SEEEEEEETTCH
T ss_pred cC-CEEEEEEECcCH
Confidence 55 999999999854
No 119
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.20 E-value=2.1e-11 Score=98.00 Aligned_cols=81 Identities=15% Similarity=0.007 Sum_probs=45.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..+|+++|.+|||||||+|+|++.... ..+.+++|.. ..+.+++ ..+++|||||..... ......+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR--------WLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch--------hhhhhhh
Confidence 358999999999999999999987653 4455555543 2334444 367899999965321 1112334
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 71 ~~~-~~~i~v~d~~~~ 85 (166)
T 3q72_A 71 AMG-DAYVIVYSVTDK 85 (166)
T ss_dssp --C-CEEEEEEETTCH
T ss_pred hhC-CEEEEEEECCCH
Confidence 444 999999999965
No 120
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.19 E-value=6.9e-11 Score=99.48 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec---CeeEEEEeCCCCCCCCCCchhHHHH-HHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDHNIIEM-CSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~e~-~~~~ 242 (275)
...+|+++|.+|||||||+++|++... ...+++++.+. ..+.++ +..+++|||||.. .+.. ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSS--AIYKVNNNRGNSLTLIDLPGHE--------SLRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCEE--EEEECSSTTCCEEEEEECCCCH--------HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcceee--EEEEecCCCccEEEEEECCCCh--------hHHHHHHHH
Confidence 356899999999999999999997763 34455444333 336666 4679999999953 1221 1122
Q ss_pred HHHhccceeEEEEeCCC
Q 035873 243 ALAHLRSAVLFFLDISG 259 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~ 259 (275)
.++. +|+++||+|+++
T Consensus 75 ~~~~-~~~~i~v~d~~~ 90 (214)
T 2fh5_B 75 FKSS-ARAVVFVVDSAA 90 (214)
T ss_dssp HGGG-EEEEEEEEETTT
T ss_pred HHhh-CCEEEEEEECCC
Confidence 3444 499999999985
No 121
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.19 E-value=4.5e-11 Score=98.51 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=55.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+|+|++.... ..++.|+.......+.+++. .+.+|||||..+.. ......++
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 91 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AMRDQYMR 91 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------CT
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHHH--------HHHHHhhC
Confidence 468999999999999999999977543 34455665555566666654 48899999954211 11123334
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
. +|++++|+|+++.
T Consensus 92 ~-~d~~i~v~d~~~~ 105 (190)
T 3con_A 92 T-GEGFLCVFAINNS 105 (190)
T ss_dssp T-CSEEEEEEETTCH
T ss_pred c-CCEEEEEEECcCH
Confidence 4 4999999999864
No 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.19 E-value=1.2e-10 Score=95.63 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=59.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc---hhHHHHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED---HNIIEMCSITALA 245 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~---~~~~e~~~~~~l~ 245 (275)
.+|+++|.+|||||||+|+|.+........|++|....... +. .+.+|||||+.....-. ...+.......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998887788888887765443 32 78999999975432211 2223223333444
Q ss_pred h-c--cceeEEEEeCC
Q 035873 246 H-L--RSAVLFFLDIS 258 (275)
Q Consensus 246 ~-~--~d~il~viD~s 258 (275)
. . .+++++|+|++
T Consensus 78 ~~~~~~~~v~~v~d~~ 93 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGK 93 (190)
T ss_dssp HHGGGCCEEEEEEETT
T ss_pred hhhccCCEEEEEEcch
Confidence 3 2 35777888875
No 123
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.19 E-value=1.5e-11 Score=115.52 Aligned_cols=90 Identities=26% Similarity=0.241 Sum_probs=61.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCe-eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|+|||||+|+|++... .+++++++|.+.....+.+.+. .+.+|||||+.+......... ..+...
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~-~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV-EKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH-HHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH-HHHHHH
Confidence 3467899999999999999999999886 4788899999999999888766 899999999987543221222 223456
Q ss_pred HHhccceeEEEEeC
Q 035873 244 LAHLRSAVLFFLDI 257 (275)
Q Consensus 244 l~~~~d~il~viD~ 257 (275)
+.+. |++|+|+|+
T Consensus 111 l~~a-D~vllVvD~ 123 (423)
T 3qq5_A 111 FYRA-DCGILVTDS 123 (423)
T ss_dssp HTSC-SEEEEECSS
T ss_pred HhcC-CEEEEEEeC
Confidence 6665 999999999
No 124
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=1.4e-11 Score=102.03 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........++.+.+.....+..+ +..+++|||||. ..........+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------~~~~~~~~~~~ 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ--------ERYRTITTAYY 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH--------HHCHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh--------HHHHHHHHHHH
Confidence 45789999999999999999999876543333333444444444443 457899999993 22233334555
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 94 ~~~-d~~i~v~d~~~~ 108 (191)
T 3dz8_A 94 RGA-MGFILMYDITNE 108 (191)
T ss_dssp TTC-CEEEEEEETTCH
T ss_pred ccC-CEEEEEEECcCH
Confidence 655 999999999854
No 125
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.7e-11 Score=101.31 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=51.3
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCccc---ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDV---QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v---~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
...++|+++|.+|||||||+|+|++..... ...|+++.+ +.+..+.+|||||..+..... ......
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~~----~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYKL----SDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCBSSCCH----HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCchHHHHH----HHHHHh
Confidence 356799999999999999999999876432 223333322 245688999999986543222 111111
Q ss_pred HHHhccceeEEEEeCC
Q 035873 243 ALAHLRSAVLFFLDIS 258 (275)
Q Consensus 243 ~l~~~~d~il~viD~s 258 (275)
.+. .+|+++||+|++
T Consensus 115 ~~~-~~~~~i~v~d~~ 129 (193)
T 2ged_A 115 RAK-FVKGLIFMVDST 129 (193)
T ss_dssp HGG-GEEEEEEEEETT
T ss_pred hcc-cCCEEEEEEECC
Confidence 122 249999999998
No 126
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.17 E-value=8.4e-12 Score=104.01 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=35.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcc-cceEEEEEEecC----eeEEEEeCCCCCCCCCCchhHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTT-KSLFVGHTDYKY----LRYQVIDTPGILDRPFEDHNIIEMCS 240 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT-~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~e~~~ 240 (275)
...+|+++|.+|||||||+|+|.+.... ...++.|+ .+.....+.+++ ..+++|||||.. ......
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~ 90 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD--------LYKEQI 90 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH--------HHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH--------HHHHHH
Confidence 3468999999999999999999987432 33444444 356666677764 478999999953 222222
Q ss_pred HHHHHhccceeEEEEeCCCC
Q 035873 241 ITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~~ 260 (275)
...++. +|++++|+|++++
T Consensus 91 ~~~~~~-~d~~i~v~d~~~~ 109 (208)
T 2yc2_C 91 SQYWNG-VYYAILVFDVSSM 109 (208)
T ss_dssp STTCCC-CCEEEEEEETTCH
T ss_pred HHHHhh-CcEEEEEEECCCH
Confidence 233333 3999999999864
No 127
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.17 E-value=4.2e-11 Score=101.39 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=49.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++.... ..+..|+.......+.+++. .+++|||||..+. .......+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~ 103 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY--------DRLRPLFY 103 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhh--------hHHHHHHh
Confidence 4578999999999999999999987653 33444555555555566554 6799999995421 11122334
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
... |++++|+|++++
T Consensus 104 ~~~-d~~i~v~d~~~~ 118 (214)
T 2j1l_A 104 PDA-SVLLLCFDVTSP 118 (214)
T ss_dssp -CE-EEEEEEEETTCH
T ss_pred ccC-CEEEEEEECcCH
Confidence 444 999999999854
No 128
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.16 E-value=8.7e-11 Score=93.57 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=56.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
.+|+++|.+|||||||+|+|.+.... ..++.++.......+.+++. .+.+|||||..+.. . .....+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~----~~~~~~~~ 74 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A----MRDQYMRT 74 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----H----HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----H----HHHHhhcc
Confidence 47999999999999999999977543 33334454444555555554 57889999965321 1 12234455
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++++|+|+++.
T Consensus 75 ~-~~~i~v~d~~~~ 87 (166)
T 2ce2_X 75 G-EGFLCVFAINNT 87 (166)
T ss_dssp C-SEEEEEEETTCH
T ss_pred C-CEEEEEEECCCH
Confidence 4 999999999854
No 129
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.16 E-value=4.2e-11 Score=100.09 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=57.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec--CeeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++.... ..++.|+.........++ ...+++|||||..+..... ...+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP--------YSFI 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC--------GGGT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH--------HHHH
Confidence 4678999999999999999999987765 333344444434444433 3567999999965433221 1233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 94 ~~~-d~~i~v~d~~~~ 108 (201)
T 3oes_A 94 IGV-HGYVLVYSVTSL 108 (201)
T ss_dssp TTC-CEEEEEEETTCH
T ss_pred hcC-CEEEEEEeCCCH
Confidence 444 999999999854
No 130
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.16 E-value=5.1e-11 Score=100.16 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=59.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+++|.+.... ..++.|+.+.....+.+++. .+++|||||..+.... ....+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL--------RPLSY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------CGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHhhc
Confidence 4578999999999999999999977653 44455555555555666553 7899999997542211 11234
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 79 ~~~-d~~ilv~d~~~~ 93 (212)
T 2j0v_A 79 RGA-DIFVLAFSLISK 93 (212)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred cCC-CEEEEEEECCCH
Confidence 444 999999999854
No 131
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.16 E-value=2.2e-10 Score=103.84 Aligned_cols=202 Identities=16% Similarity=0.173 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccch
Q 035873 47 YMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCC 126 (275)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~ 126 (275)
..+++.++++.|.+.|++++.+...+++ +++++|.+.|+..|. +......+.++....+... ....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~dv----------~~~~~~~~~~~~~~~~~~~-~~~~- 72 (320)
T 1zu4_A 7 MEKAMLKSAFNFSKDIKKLSKKYKQADD--EFFEELEDVLIQTDM----------GMKMVLKVSNLVRKKTKRD-TSFE- 72 (320)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTCCCCSH--HHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHCCTT-CCHH-
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHHHhhc-hhHH-
Confidence 3466888999999999999988778887 699999999999885 2233333333332222211 1110
Q ss_pred hhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHh------cCCcccccCCC
Q 035873 127 KSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKIT------RADVDVQPYAF 200 (275)
Q Consensus 127 ~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~~~~ 200 (275)
.+++.+...+.+++..... ...+..+.........|+++|.+|+||||++..|. |.++.+...+.
T Consensus 73 -~~~~~~~~~l~~~l~~~~~--------~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 73 -NIKDALVESLYQAYTDNDW--------TNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -HHHHHHHHHHHHHHHCSCC------------CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred -HHHHHHHHHHHHHhCcccc--------cccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 1222222222222110000 00001111112345689999999999999998886 33333221111
Q ss_pred ccc--------------ceEEEEEE--------------------ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH--
Q 035873 201 TTK--------------SLFVGHTD--------------------YKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL-- 244 (275)
Q Consensus 201 tT~--------------~~~~~~~~--------------------~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l-- 244 (275)
... ......+. ..+.++.|+||||........++++.... ..+
T Consensus 144 ~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~-~vi~~ 222 (320)
T 1zu4_A 144 FRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMN-KIIQQ 222 (320)
T ss_dssp SCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHH-HHHHT
T ss_pred cchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHH-HHHhc
Confidence 000 11111110 12357999999998754322333333221 122
Q ss_pred --HhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 245 --AHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 245 --~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
...+|.+++|+|++ .+++..+|++.|.+
T Consensus 223 ~~p~~~d~vllVl~a~--~~~~~l~~~~~~~~ 252 (320)
T 1zu4_A 223 VEKSAPHEVLLVIDAT--TGQNGVIQAEEFSK 252 (320)
T ss_dssp TCTTCCSEEEEEEEGG--GTHHHHHHHHHHTT
T ss_pred ccCCCCceEEEEEECC--CcHHHHHHHHHHhh
Confidence 23358899999998 56777777776653
No 132
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.15 E-value=4.7e-11 Score=97.55 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=56.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+++|++.... ..+..|+.......+.+++. .+++|||||..+.... ....++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 75 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL--------RPLSYP 75 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT--------GGGGCT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH--------HHHhcc
Confidence 468999999999999999999976543 33444555555555556654 5679999997432111 112233
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
. +|++++|+|++++
T Consensus 76 ~-~d~~i~v~d~~~~ 89 (186)
T 1mh1_A 76 Q-TDVSLICFSLVSP 89 (186)
T ss_dssp T-CSEEEEEEETTCH
T ss_pred C-CcEEEEEEECCCh
Confidence 3 4999999999854
No 133
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=2.2e-10 Score=94.82 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++........| |........+..++ ..+++|||||..+. .......+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 77 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQF--------PAMQRLSI 77 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGSC--------HHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEECCEEEEEEEEeCCChHHh--------HHHHHHhh
Confidence 457899999999999999999998765433222 22222223333443 36899999995421 11223445
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 78 ~~~-d~~i~v~d~~~~ 92 (199)
T 2gf0_A 78 SKG-HAFILVFSVTSK 92 (199)
T ss_dssp HHC-SEEEEEEETTCH
T ss_pred ccC-CEEEEEEECcCH
Confidence 555 999999999864
No 134
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=5.8e-11 Score=98.32 Aligned_cols=84 Identities=12% Similarity=0.053 Sum_probs=59.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+++|.+.... ..+..|+.......+.+++ ..+++|||||..+..... ...+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 87 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR--------PLSY 87 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTG--------GGGC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHH--------HHhc
Confidence 3468999999999999999999977543 4455555555555666665 467899999975432111 1223
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 88 ~~~-d~~i~v~d~~~~ 102 (194)
T 2atx_A 88 PMT-DVFLICFSVVNP 102 (194)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred CCC-CEEEEEEECCCH
Confidence 444 999999999854
No 135
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.15 E-value=1.7e-10 Score=95.42 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+.... ..+..|+.......+.+++. .+++|||||...... + ...+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----~----~~~~ 89 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-----C----ERYL 89 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-----T----HHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-----H----HHHH
Confidence 4578999999999999999999977643 44555555544444555543 678999999653221 1 1244
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 90 ~~~-~~~ilv~d~~~~ 104 (187)
T 3c5c_A 90 NWA-HAFLVVYSVDSR 104 (187)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred hhC-CEEEEEEECCCH
Confidence 554 999999999854
No 136
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.14 E-value=1.2e-10 Score=96.37 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||+|++++........| |.+.....+.+++. .+++|||||... . ..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~-----~~ 82 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPE--------L-----QF 82 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCC--------H-----HH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChh--------h-----he
Confidence 3567999999999999999999998765433323 34444456667764 567899999642 1 14
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|++++
T Consensus 83 ~~~~-~~~i~v~d~~~~ 98 (184)
T 3ihw_A 83 AAWV-DAVVFVFSLEDE 98 (184)
T ss_dssp HHHC-SEEEEEEETTCH
T ss_pred ecCC-CEEEEEEECcCH
Confidence 4554 999999999964
No 137
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.14 E-value=4.1e-11 Score=114.28 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=62.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.||||||||+|+|++... +.. +.|.+.....+.+++..+.+|||||..... ......++.
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~~--~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 389 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VTT--IPTVGFNVETVTYKNVKFNVWDVGGQDKIR--------PLWRHYYTG 389 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CCC--CCCSSEEEEEEESSSCEEEEEEECCCGGGS--------GGGGGGGTT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CCc--CCccceeEEEEEeCCEEEEEEECCCcHHHH--------HHHHHHhcc
Confidence 346899999999999999999998773 233 347888888888888999999999954321 112234444
Q ss_pred ccceeEEEEeCCCC
Q 035873 247 LRSAVLFFLDISGS 260 (275)
Q Consensus 247 ~~d~il~viD~s~~ 260 (275)
. |++|+|+|+++.
T Consensus 390 a-d~~i~V~D~~~~ 402 (497)
T 3lvq_E 390 T-QGLIFVVDCADR 402 (497)
T ss_dssp C-CEEEEEEETTCG
T ss_pred C-CEEEEEEECcch
Confidence 4 999999999964
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.13 E-value=9.3e-11 Score=106.47 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=60.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH 246 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (275)
...+|+++|.+|||||||+|+|++.... ..+| |.+.....+.+.+..+++|||||..... ......++.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 232 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR--------PLWRHYFQN 232 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----C--------CSHHHHHTT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cccc--ccceEEEEEecCcEEEEEEECCCCHhHH--------HHHHHHhcc
Confidence 3458999999999999999999987753 3334 6667777788888899999999943211 112334555
Q ss_pred ccceeEEEEeCCCCCC
Q 035873 247 LRSAVLFFLDISGSCG 262 (275)
Q Consensus 247 ~~d~il~viD~s~~~g 262 (275)
. |++|+|+|+++..+
T Consensus 233 a-d~vilV~D~~~~~s 247 (329)
T 3o47_A 233 T-QGLIFVVDSNDRER 247 (329)
T ss_dssp E-EEEEEEEETTCSSS
T ss_pred C-CEEEEEEECCchHH
Confidence 4 99999999996543
No 139
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.13 E-value=4.8e-11 Score=100.76 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=54.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec-C--eeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
...+|+++|.+|||||||+|+|++........+..+........... + ..+.+|||||..+..... ...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 81 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--------DVY 81 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC--------HHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH--------HHH
Confidence 45689999999999999999999776542222222212222222222 2 468999999965432211 223
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
+... |++++|+|+++.
T Consensus 82 ~~~~-d~~i~v~d~~~~ 97 (218)
T 4djt_A 82 YIGA-SGAILFFDVTSR 97 (218)
T ss_dssp HTTC-SEEEEEEETTCH
T ss_pred hhcC-CEEEEEEeCCCH
Confidence 4444 999999999954
No 140
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.13 E-value=5.7e-11 Score=98.47 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=57.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++.... ..+..|+.......+.+++. .+++|||||..+... .....+
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 92 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR--------LRPLSY 92 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH--------HhHhhc
Confidence 4568999999999999999999987753 34444555554555556655 459999999542211 112233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 93 ~~~-d~~i~v~d~~~~ 107 (194)
T 3reg_A 93 ADS-DVVLLCFAVNNR 107 (194)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred cCC-cEEEEEEECCCH
Confidence 444 999999999864
No 141
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.12 E-value=2.8e-10 Score=95.34 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=53.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc--ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCC--CCCchhHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV--DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR--PFEDHNIIEMCSIT 242 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~e~~~~~ 242 (275)
....|+++|.+|||||||+|+|+|... .+.+.+++|... +.+.+++ .+.++||||+... +.+.+..+......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 456899999999999999999998762 356667776643 3444444 7889999998642 12222223222122
Q ss_pred HHH--hccceeEEEEeCCCCC
Q 035873 243 ALA--HLRSAVLFFLDISGSC 261 (275)
Q Consensus 243 ~l~--~~~d~il~viD~s~~~ 261 (275)
.+. ...+++++|+|++...
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~ 122 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPL 122 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCC
T ss_pred HHHhhhcccEEEEEEECCCCC
Confidence 332 2348899999998654
No 142
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.11 E-value=8.8e-11 Score=97.81 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCccc--ccCCCcccceEEEEEE-ecCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDV--QPYAFTTKSLFVGHTD-YKYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v--~~~~~tT~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
....+|+++|.+|||||||++.+++..... ....+++.... ..+. .....+++|||||..+....... ...
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~ 91 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYK-DDISNSSFVNFQIWDFPGQMDFFDPTFD-----YEM 91 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEE-EEECCTTSCCEEEEECCSSCCTTCTTCC-----HHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceee-eeccCCCeeEEEEEECCCCHHHHhhhhh-----ccc
Confidence 346799999999999999999998754321 11122222221 1111 23468999999996542111000 023
Q ss_pred HHHhccceeEEEEeCCCC
Q 035873 243 ALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 243 ~l~~~~d~il~viD~s~~ 260 (275)
.++.. |++++|+|+++.
T Consensus 92 ~~~~~-~~~i~v~d~~~~ 108 (196)
T 3llu_A 92 IFRGT-GALIYVIDAQDD 108 (196)
T ss_dssp HHHTC-SEEEEEEETTSC
T ss_pred ccccC-CEEEEEEECCCc
Confidence 45555 999999999975
No 143
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.11 E-value=2e-10 Score=95.89 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=60.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+++|++........|+.+.+...+.+.+++. .+++|||||....... ....+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--------~~~~~~ 76 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--------TSAYYR 76 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--------CHHHHT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh--------hHHHHh
Confidence 468999999999999999999988766555566666677788888775 5678999995432111 122334
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
. ++++++|+|+++.
T Consensus 77 ~-~~~~i~v~d~~~~ 90 (199)
T 2f9l_A 77 G-AVGALLVYDIAKH 90 (199)
T ss_dssp T-CSEEEEEEETTCH
T ss_pred c-CCEEEEEEECcCH
Confidence 4 4899999999854
No 144
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.11 E-value=2.1e-11 Score=112.58 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=60.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC------CcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRA------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~------~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
.+|+++|.||||||||+|+|++. ...++++|+||.+.....+ +..+.++||||+.+..... ..+....+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~-~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMA-HFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGG-GGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHH-HHHhHHHHH
Confidence 37999999999999999999986 5668999999988765442 2358999999998654211 111111122
Q ss_pred HH---HhccceeEEEEeCC
Q 035873 243 AL---AHLRSAVLFFLDIS 258 (275)
Q Consensus 243 ~l---~~~~d~il~viD~s 258 (275)
.+ .+ .++++|++|+.
T Consensus 239 ~~~~~~~-i~~~~~~l~~~ 256 (369)
T 3ec1_A 239 IITPKRE-IHPRVYQLNEG 256 (369)
T ss_dssp HHSCSSC-CCCEEEEECTT
T ss_pred HHhcccc-cCceEEEEcCC
Confidence 23 33 38999999984
No 145
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.11 E-value=1.2e-10 Score=97.91 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=57.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCee--EEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||++++++.... ..+..|+.+.....+.+++.. +++|||||..+.... ....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~ 98 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL--------RPLS 98 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT--------GGGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH--------HHHH
Confidence 35679999999999999999999976543 344556666666666666654 459999997432111 1123
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|++++
T Consensus 99 ~~~~-d~~i~v~d~~~~ 114 (204)
T 4gzl_A 99 YPQT-DVFLICFSLVSP 114 (204)
T ss_dssp CTTC-SEEEEEEETTCH
T ss_pred hccC-CEEEEEEECCCH
Confidence 3444 999999999954
No 146
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.10 E-value=1.5e-10 Score=96.85 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=57.7
Q ss_pred CCCCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHH
Q 035873 164 IDPNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSI 241 (275)
Q Consensus 164 ~~~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~ 241 (275)
+.....+|+++|.+|||||||+|+|.+........|+++... ...+.+++. .+++|||||..+.... ..
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~ 91 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRL--------RP 91 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTT--------GG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHH--------HH
Confidence 334557899999999999999999998776433334333333 344556554 6899999995432111 11
Q ss_pred HHHHhccceeEEEEeCCCC
Q 035873 242 TALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~ 260 (275)
..++. +|++++|+|++++
T Consensus 92 ~~~~~-~d~~i~v~d~~~~ 109 (201)
T 2gco_A 92 LSYPD-TDVILMCFSIDSP 109 (201)
T ss_dssp GGCTT-CSEEEEEEETTCH
T ss_pred HhcCC-CCEEEEEEECCCH
Confidence 23334 3999999999854
No 147
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.10 E-value=3.1e-11 Score=111.40 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=55.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC-------CcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRA-------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSI 241 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~-------~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~ 241 (275)
.+|+++|.||||||||+|+|++. ...++++|+||++.....+ . ..+.++||||+.+..... ..+....+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~-~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--D-EESSLYDTPGIINHHQMA-HYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--S-SSCEEEECCCBCCTTSGG-GGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--c-CCeEEEeCCCcCcHHHHH-HHhhHHHH
Confidence 47999999999999999999975 3447899999988776442 2 348999999998754211 11111112
Q ss_pred HHH--HhccceeEEEEeCC
Q 035873 242 TAL--AHLRSAVLFFLDIS 258 (275)
Q Consensus 242 ~~l--~~~~d~il~viD~s 258 (275)
..+ ....+.++|++|+.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEE 255 (368)
T ss_dssp HHHSCSSCCCCEEEEECTT
T ss_pred HHhccccccCceEEEEcCC
Confidence 221 12237899999983
No 148
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=2e-10 Score=96.41 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=54.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+...... +..|+.......+.+++ ..+++|||||..+..... ...+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 94 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR--------PLSY 94 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTG--------GGGC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHH--------Hhhc
Confidence 346899999999999999999998775433 33334343334455665 368999999965432111 1223
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+. +|++++|+|++++
T Consensus 95 ~~-~d~~i~v~d~~~~ 109 (207)
T 2fv8_A 95 PD-TDVILMCFSVDSP 109 (207)
T ss_dssp TT-CCEEEEEEETTCH
T ss_pred CC-CCEEEEEEECCCH
Confidence 34 4999999999854
No 149
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.10 E-value=2e-10 Score=96.85 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=53.2
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCccc---ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDV---QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSIT 242 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v---~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~ 242 (275)
...++|+++|.+|||||||+|+|.+..... ...|+++.. +.+..+++|||||..+. +..+ ..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~----~~~~----~~ 74 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKL----RYKL----SD 74 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-------GGGSSCEEEECCCCGGG----THHH----HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-------eeCceEEEEECCCcHHH----HHHH----HH
Confidence 356789999999999999999999876432 222322222 25568999999997431 1222 23
Q ss_pred HHHh---ccceeEEEEeCC
Q 035873 243 ALAH---LRSAVLFFLDIS 258 (275)
Q Consensus 243 ~l~~---~~d~il~viD~s 258 (275)
.++. .+|+++||+|++
T Consensus 75 ~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp HHHHHGGGEEEEEEEEETT
T ss_pred HHHhccccCCEEEEEEECC
Confidence 3333 248999999998
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.09 E-value=5.4e-10 Score=105.36 Aligned_cols=86 Identities=10% Similarity=0.046 Sum_probs=63.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-------------------------------cccCCCcccceEEEEEEecCe
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-------------------------------VQPYAFTTKSLFVGHTDYKYL 215 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-------------------------------v~~~~~tT~~~~~~~~~~~~~ 215 (275)
...+|+++|.+|+|||||+|+|++.... ....+++|.+.....+.+++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 4568999999999999999999643211 112256788888888888889
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 216 RYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 216 ~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
.+.+|||||..+ +.+.....+... |++|+|+|+++..
T Consensus 96 ~~~iiDTPGh~~--------f~~~~~~~~~~a-D~~ilVVDa~~g~ 132 (439)
T 3j2k_7 96 HFTILDAPGHKS--------FVPNMIGGASQA-DLAVLVISARKGE 132 (439)
T ss_pred EEEEEECCChHH--------HHHHHHhhHhhC-CEEEEEEECCCCc
Confidence 999999999532 223334555555 9999999999753
No 151
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.09 E-value=4.9e-11 Score=101.12 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=57.9
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCC-c-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRAD-V-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~-~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
....+|+++|.+|||||||+|++.... . ...+.+++|.......+...+..+++|||||....... ....
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 84 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--------RDGY 84 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--------CHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--------HHHH
Confidence 345789999999999999999954332 2 24555555655554444334467899999995432211 1234
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
++.. |++++|+|+++.
T Consensus 85 ~~~~-~~~i~v~d~~~~ 100 (221)
T 3gj0_A 85 YIQA-QCAIIMFDVTSR 100 (221)
T ss_dssp HTTC-CEEEEEEETTCH
T ss_pred HhcC-CEEEEEEECCCH
Confidence 4554 999999999964
No 152
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.09 E-value=1.6e-09 Score=107.98 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=64.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceE--------------------------------------
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLF-------------------------------------- 206 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~-------------------------------------- 206 (275)
...+.|+++|.+|+|||||+|+|+|..+. .+.. .+|+.+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 45779999999999999999999998753 2222 2332221
Q ss_pred -------------EEEEEec-CeeEEEEeCCCCCCCCCCc-----hhHHHHHHHHHHHhccceeEEEEeCCCCCCCCH
Q 035873 207 -------------VGHTDYK-YLRYQVIDTPGILDRPFED-----HNIIEMCSITALAHLRSAVLFFLDISGSCGYSI 265 (275)
Q Consensus 207 -------------~~~~~~~-~~~~~liDTpG~~~~~~~~-----~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~ 265 (275)
.-.+... ..++.++||||+...+... ...+......++...+|+||+|+|++...+...
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhH
Confidence 1112221 2368899999998754211 233444444555555699999999997655443
No 153
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.08 E-value=3.9e-11 Score=97.81 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=47.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||++++.+.... ..++.|+.......+.+++ ..+++|||||..+.... ....+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 77 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL--------RPLSY 77 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTT--------GGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh--------HHhhc
Confidence 4568999999999999999999977643 3333333332222222333 34679999996532211 11233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 78 ~~~-d~~i~v~d~~~~ 92 (182)
T 3bwd_D 78 RGA-DVFILAFSLISK 92 (182)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred cCC-CEEEEEEECCCH
Confidence 444 999999999854
No 154
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.08 E-value=2.1e-10 Score=109.45 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=60.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC-------cccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD-------VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCS 240 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~-------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~ 240 (275)
..+|+++|.+|+|||||+|+|++.. ......+++|.+.....+.+++..+.+|||||.. .+....
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~--------~~~~~~ 90 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA--------DLIRAV 90 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH--------HHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH--------HHHHHH
Confidence 4689999999999999999999877 2234556778777777778888899999999942 222223
Q ss_pred HHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 241 ~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
...+.. +|++|+|+|+++.......+.+.+
T Consensus 91 ~~~~~~-aD~~ilVvda~~g~~~qt~e~l~~ 120 (482)
T 1wb1_A 91 VSAADI-IDLALIVVDAKEGPKTQTGEHMLI 120 (482)
T ss_dssp HHHTTS-CCEEEEEEETTTCSCHHHHHHHHH
T ss_pred HHHHhh-CCEEEEEEecCCCccHHHHHHHHH
Confidence 344444 499999999996543333333333
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.5e-10 Score=113.50 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCccccc-------------------------------CCCcccceEEEEEEecC
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQP-------------------------------YAFTTKSLFVGHTDYKY 214 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~-------------------------------~~~tT~~~~~~~~~~~~ 214 (275)
....+|+++|.+|+|||||+|+|++....+.. .+++|.+.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34578999999999999999999876433221 25778888888888888
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
.++.+|||||..+ +.......++. +|++|+|+|++.
T Consensus 245 ~~~~iiDTPG~e~--------f~~~~~~~~~~-aD~~llVVDa~~ 280 (611)
T 3izq_1 245 ANFTIVDAPGHRD--------FVPNAIMGISQ-ADMAILCVDCST 280 (611)
T ss_dssp CEEEEEECCSSSC--------HHHHHTTTSSC-CSEEEEEEECSH
T ss_pred ceEEEEECCCCcc--------cHHHHHHHHhh-cCceEEEEECCC
Confidence 9999999999642 12222333344 499999999985
No 156
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.07 E-value=2.5e-10 Score=109.25 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHh------cCCccc-ccCCCccc-------------ceEEEE----------------E
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT------RADVDV-QPYAFTTK-------------SLFVGH----------------T 210 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~------~~~~~v-~~~~~tT~-------------~~~~~~----------------~ 210 (275)
.+..|+++|.+||||||++++|+ |.++.+ +.-++... -..... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 776542 22111100 000110 1
Q ss_pred EecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 211 DYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 211 ~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.+.+.++.||||||..........++... ... ..+|.++||+|++. |.+...+++.|++
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~--~~~-i~pd~vllVvDa~~--g~~~~~~a~~~~~ 238 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQV--ANA-IQPDNIVYVMDASI--GQACEAQAKAFKD 238 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHH--HHH-HCCSEEEEEEETTC--CTTHHHHHHHHHH
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHH--Hhh-hcCceEEEEEeccc--cccHHHHHHHHHh
Confidence 12567899999999886432222222221 111 14699999999984 5677777776653
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.07 E-value=2.9e-10 Score=108.39 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc-------------------------------ccccCCCcccceEEEEEEecCe
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV-------------------------------DVQPYAFTTKSLFVGHTDYKYL 215 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~ 215 (275)
...+|+++|.+|+|||||+|+|++... .....+++|.+.....+.+.+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 346899999999999999999975411 1223357788888888888888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 216 RYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 216 ~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
.+.+|||||..+ +.......++.. |++|+|+|++++
T Consensus 112 ~~~iiDTPG~~~--------f~~~~~~~~~~a-D~~llVvDa~~g 147 (483)
T 3p26_A 112 NFTIVDAPGHRD--------FVPNAIMGISQA-DMAILCVDCSTN 147 (483)
T ss_dssp EEEEECCCCCGG--------GHHHHHHHHTTC-SEEEEEEECCC-
T ss_pred eEEEEECCCcHH--------HHHHHHHhhhhC-CEEEEEEECCCC
Confidence 999999999742 223334555655 999999999964
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.06 E-value=9.3e-11 Score=113.03 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=66.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc----------------c------cccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV----------------D------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~----------------~------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
.++|+++|.+|+|||||+|+|++... . ....+++|.......+.+++..+.+|||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 45899999999999999999962110 0 1123567777888888999999999999997
Q ss_pred CCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 226 LDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
.+.. . .+...++.+ |++|+|+|++.........-+.
T Consensus 93 ~df~----~----~~~~~l~~a-D~allVvDa~~g~~~~t~~~~~ 128 (528)
T 3tr5_A 93 ADFT----E----DTYRTLTAV-DSALMVIDAAKGVEPRTIKLME 128 (528)
T ss_dssp TTCC----H----HHHHGGGGC-SEEEEEEETTTCSCHHHHHHHH
T ss_pred hhHH----H----HHHHHHHhC-CEEEEEEeCCCCCCHHHHHHHH
Confidence 6532 1 234456655 9999999999654333333333
No 159
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.05 E-value=1.1e-10 Score=105.04 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccc
Q 035873 46 FYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYC 125 (275)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~ 125 (275)
.+..+++++++.|.+.|++++.+. .+++ ++++++.+.|...|. +.. +.++....++. .+
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~L~~~dv----------~~~----~~~~~~~~~~~----~~ 76 (306)
T 1vma_A 18 FLKKGLQKTKETFFGRVVKLLKGK-KLDD--ETREELEELLIQADV----------GVE----TTEYILERLEE----KD 76 (306)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTC-CCCH--HHHHHHHHHHHHTTC----------CHH----HHHHHHHHHTT----CC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHHCCC----------CHH----HHHHHHHHHHh----cC
Confidence 466789999999999999999866 7887 799999999998885 222 22222222222 11
Q ss_pred hhhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccCCCC---CCCCceeEeeccCCCCHHHHHHHHhc------CCcccc
Q 035873 126 CKSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSI---DPNTRTILICWYPNVGKSSFMNKITR------ADVDVQ 196 (275)
Q Consensus 126 ~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~---~~~~~~i~ivG~~nvGKStlin~l~~------~~~~v~ 196 (275)
.. +++.+...+ .+.+...... ...+..|+++|.+|+||||++..|.+ .++.+.
T Consensus 77 ~~-~~~~~~~~l-----------------~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 77 GD-ALESLKEII-----------------LEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SC-HHHHHHHHH-----------------HHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HH-HHHHHHHHH-----------------HHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 11 333333222 2222111111 12345789999999999999998873 333221
Q ss_pred cCCCcccc-----------eEEEEE-------------------EecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHH--
Q 035873 197 PYAFTTKS-----------LFVGHT-------------------DYKYLRYQVIDTPGILDRPFEDHNIIEMCSITAL-- 244 (275)
Q Consensus 197 ~~~~tT~~-----------~~~~~~-------------------~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l-- 244 (275)
..+..... .....+ ...+.++.++||||........++++.+. ...+
T Consensus 139 ~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l-~~~i~~ 217 (306)
T 1vma_A 139 AADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKV-HRVVKK 217 (306)
T ss_dssp EECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHH-HHHGGG
T ss_pred ccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHH-HHHHhh
Confidence 11110000 000000 01235789999999753322223333221 1122
Q ss_pred --HhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 245 --AHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 245 --~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
...++.+++|+|++ ++++..+|++-|.
T Consensus 218 ~i~~~p~~vllVlda~--t~~~~l~~a~~~~ 246 (306)
T 1vma_A 218 KIPDAPHETLLVIDAT--TGQNGLVQAKIFK 246 (306)
T ss_dssp TCTTCCSEEEEEEEGG--GHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEEEECC--CCHHHHHHHHHHH
Confidence 22368899999998 6677777776654
No 160
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.05 E-value=8.1e-11 Score=96.93 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=52.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccC--------CCcccceEEEEE---Eec--CeeEEEEeCCCCCCCCCCch
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPY--------AFTTKSLFVGHT---DYK--YLRYQVIDTPGILDRPFEDH 233 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~--------~~tT~~~~~~~~---~~~--~~~~~liDTpG~~~~~~~~~ 233 (275)
...+|+++|.+|||||||++.+.+........ ...|.+...... .++ ...+++|||||..+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 45689999999999999999998765432111 011222111111 111 2468999999965321
Q ss_pred hHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 234 NIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 234 ~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
. .....++.. |++++|+|++++
T Consensus 89 ~----~~~~~~~~~-d~~i~v~D~~~~ 110 (198)
T 3t1o_A 89 A----SRKLILRGV-DGIVFVADSAPN 110 (198)
T ss_dssp H----HHHHHTTTC-CEEEEEEECCGG
T ss_pred H----HHHHHHhcC-CEEEEEEECCcc
Confidence 1 122345555 999999999843
No 161
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.04 E-value=1.6e-10 Score=97.87 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++.... ..+..|+.......+.+++ ..+++|||||...... .....+
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 96 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN--------VRPLCY 96 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH--------HHHHHc
Confidence 4568999999999999999999987654 3333344333333444443 4689999999643211 111234
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|+++.
T Consensus 97 ~~~-d~~i~v~d~~~~ 111 (214)
T 3q3j_B 97 SDS-DAVLLCFDISRP 111 (214)
T ss_dssp TTC-SEEEEEEETTCT
T ss_pred CCC-eEEEEEEECcCH
Confidence 444 999999999964
No 162
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.04 E-value=3.6e-10 Score=92.93 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=55.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+..... .+..|+.......+.+++ ..+++|||||..+.... ....+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 76 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------RPLSY 76 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT--------GGGGC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh--------HHhhc
Confidence 45689999999999999999999876542 232333333334445544 46799999996432110 01223
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+. +|++++|+|++++
T Consensus 77 ~~-~~~~i~v~d~~~~ 91 (184)
T 1m7b_A 77 PD-SDAVLICFDISRP 91 (184)
T ss_dssp TT-CSEEEEEEETTCH
T ss_pred CC-CcEEEEEEECCCH
Confidence 33 4999999999854
No 163
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.04 E-value=2.5e-10 Score=97.63 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=54.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||++++.+........|+...+.....+..++. .+++|||+|..+.. . .....++
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----~----l~~~~~~ 84 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----S----LIPSYIR 84 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG----G----GHHHHHT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----h----HHHHHhc
Confidence 468999999999999999999876654443444444555555555554 57899999964321 1 1223455
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
.. +++++|+|.++.
T Consensus 85 ~a-~~~ilv~di~~~ 98 (216)
T 4dkx_A 85 DS-AAAVVVYDITNV 98 (216)
T ss_dssp TC-SEEEEEEETTCH
T ss_pred cc-cEEEEEeecchh
Confidence 54 999999999854
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.03 E-value=1.4e-09 Score=90.29 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=61.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCee--EEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
..+|+++|.+|||||||+++|++........|+.+.+...+.+.+++.. +++|||||......-. ...++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--------~~~~~ 100 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT--------SAYYR 100 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC--------HHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh--------HHHhh
Confidence 4689999999999999999999887665566666767777888888765 4679999975432111 12233
Q ss_pred hccceeEEEEeCCCC
Q 035873 246 HLRSAVLFFLDISGS 260 (275)
Q Consensus 246 ~~~d~il~viD~s~~ 260 (275)
. ++++++|+|.+..
T Consensus 101 ~-~~~~i~v~d~~~~ 114 (191)
T 1oix_A 101 G-AVGALLVYDIAKH 114 (191)
T ss_dssp T-CCEEEEEEETTCH
T ss_pred c-CCEEEEEEECcCH
Confidence 3 3889999998854
No 165
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.03 E-value=1.9e-11 Score=117.81 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=69.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEe-cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
++++|+++|.+|+|||||+++|++..+.....+++|.+.....+.+ ++..+++|||||..+..... ...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~--------~~~~~ 74 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR--------ARGTQ 74 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB--------BSSSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH--------HHHHc
Confidence 5678999999999999999999988776667788888877766666 46689999999965432211 11122
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
.+|++++|+|+++.......+.+..
T Consensus 75 -~aD~vILVVDa~dg~~~qt~e~l~~ 99 (537)
T 3izy_P 75 -VTDIVILVVAADDGVMKQTVESIQH 99 (537)
T ss_dssp -SBSSCEEECBSSSCCCHHHHHHHHH
T ss_pred -cCCEEEEEEECCCCccHHHHHHHHH
Confidence 3499999999997544433444443
No 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.02 E-value=4.3e-10 Score=94.79 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=55.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecC--eeEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|++...... +..|+.......+.+++ ..+++|||||..+.... ....+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 97 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------RPLSY 97 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT--------GGGGC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH--------HHhhc
Confidence 456899999999999999999998765432 22333333334444444 46899999996432110 11223
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+. +|++++|+|+++.
T Consensus 98 ~~-~d~~ilv~D~~~~ 112 (205)
T 1gwn_A 98 PD-SDAVLICFDISRP 112 (205)
T ss_dssp TT-CSEEEEEEETTCH
T ss_pred cC-CCEEEEEEECCCH
Confidence 34 4999999999854
No 167
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.02 E-value=2.2e-10 Score=104.98 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+.|+++|+||||||||+|+|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4467899999999999999999985
No 168
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.02 E-value=3.1e-09 Score=95.48 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccch
Q 035873 47 YMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCC 126 (275)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~ 126 (275)
+..++.++++.|. .+++++.+...+| +.+++++|.+.|...|. ....+...++.+.+.... ......
T Consensus 3 ~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~L~~~dv------~~~~~~~~~~~~~~~~~~-----~~~~~~ 69 (302)
T 3b9q_A 3 VFSGFSKTRENLA-VIDELLLFWNLAE-TDRVLDELEEALLVSDF------GPKITVRIVERLREDIMS-----GKLKSG 69 (302)
T ss_dssp HHHHTHHHHHHHT-HHHHHHTTCCGGG-HHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHT-----TSCCSH
T ss_pred HHHHHHHHHHHHH-HHHHHHcCCCcCC-HHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHhh-----cCCCCH
Confidence 4567889999999 9999998777777 34899999999999885 222233333333222211 111112
Q ss_pred hhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHhc------CCcccccCCC
Q 035873 127 KSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKITR------ADVDVQPYAF 200 (275)
Q Consensus 127 ~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~~~ 200 (275)
+.+.+.....+.+.+.... ....+.........++++|++|+||||+++.|++ .++.+...+.
T Consensus 70 ~~~~~~~~~~l~~~l~~~~-----------~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKN-----------SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp HHHHHHHHHHHHHHHCC-------------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCcc-----------cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 2233333322222211000 0001110012345889999999999999999974 2333222221
Q ss_pred cccc-----------eEEEEE----E----------------ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH----
Q 035873 201 TTKS-----------LFVGHT----D----------------YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA---- 245 (275)
Q Consensus 201 tT~~-----------~~~~~~----~----------------~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~---- 245 (275)
.... ...+.+ . ..+....++||+|+.+.....+.++.++ ..++.
T Consensus 139 ~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkq-r~~iaral~ 217 (302)
T 3b9q_A 139 FRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIAC-KKAVGKIVS 217 (302)
T ss_dssp SCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHH-HHHHHTTST
T ss_pred cchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHH-HHHHHHhhc
Confidence 1100 001111 0 0123567899999976554444555433 22222
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
..|+-+++|+|++ .|.+...|++-|.
T Consensus 218 ~~P~e~lLvLDpt--sglD~~~~~~~~~ 243 (302)
T 3b9q_A 218 GAPNEILLVLDGN--TGLNMLPQAREFN 243 (302)
T ss_dssp TCCSEEEEEEEGG--GGGGGHHHHHHHH
T ss_pred cCCCeeEEEEeCC--CCcCHHHHHHHHH
Confidence 3356679999977 7788888887664
No 169
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.02 E-value=1.2e-09 Score=90.88 Aligned_cols=86 Identities=12% Similarity=-0.010 Sum_probs=56.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
..+|+++|.+|||||||+|++.+... ....+++++.+.....+.+++. .+++|||+|..... ..+ ....+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~-~~~------~~~~~ 78 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN-EWL------HDHCM 78 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTT------GGGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh-hhH------HHhhc
Confidence 46899999999999999999997543 3455566666666666777765 45789999964311 000 11123
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
+. +|++++|+|.++..
T Consensus 79 ~~-~~~~i~v~dv~~~~ 94 (192)
T 2cjw_A 79 QV-GDAYLIVYSITDRA 94 (192)
T ss_dssp HH-CSEEEEEEETTCHH
T ss_pred cc-CCEEEEEEECCCHH
Confidence 33 49999999998653
No 170
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.58 E-value=2.9e-11 Score=101.20 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=57.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCe--eEEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||+|+|.+.... ..+..|+.+.....+.+++. .+++|||||..+.. ......+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 99 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RLRPLSY 99 (204)
Confidence 4568999999999999999999876543 33344454444444444444 56699999964321 1122344
Q ss_pred HhccceeEEEEeCCCCC
Q 035873 245 AHLRSAVLFFLDISGSC 261 (275)
Q Consensus 245 ~~~~d~il~viD~s~~~ 261 (275)
+.. |++++|+|++++.
T Consensus 100 ~~~-d~iilv~D~~~~~ 115 (204)
T 3th5_A 100 PQT-DVFLICFSLVSPA 115 (204)
Confidence 444 9999999998654
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.01 E-value=5.7e-10 Score=110.88 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=60.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEE--------------------------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFV-------------------------------------- 207 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~-------------------------------------- 207 (275)
...+|+++|.+|+|||||+|+|+|.++. ++..|+|..-...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4568999999999999999999998864 5566665211000
Q ss_pred ---------------EEEEecC----eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCC
Q 035873 208 ---------------GHTDYKY----LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 208 ---------------~~~~~~~----~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~ 263 (275)
..+.+.. ..+.+|||||+.+... ....+...+.++ |++|||+|++.+...
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-----~~~~~~~~i~~a-D~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-----RNELSLGYVNNC-HAILFVMRASQPCTL 216 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-----CHHHHTHHHHSS-SEEEEEEETTSTTCH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-----HHHHHHHHHHhC-CEEEEEEeCCCccch
Confidence 0011111 3689999999764211 122344566665 999999999865443
No 172
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.00 E-value=5.6e-10 Score=104.01 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC--------Ccc-c--------ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA--------DVD-V--------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~--------~~~-v--------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
...+|+++|.+|+|||||+|+|++. ... . ....+.|.+.....+.+.+..+.+|||||..+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 3468999999999999999999863 110 0 01245666666666666778999999999653
Q ss_pred CCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 230 FEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
+.......++.. |++|+|+|+++.......+-+.+
T Consensus 88 ------f~~~~~~~~~~a-D~~ilVvda~~g~~~qt~~~l~~ 122 (405)
T 2c78_A 88 ------YIKNMITGAAQM-DGAILVVSAADGPMPQTREHILL 122 (405)
T ss_dssp ------GHHHHHHHHTTC-SSEEEEEETTTCCCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHC-CEEEEEEECCCCCcHHHHHHHHH
Confidence 122234455554 99999999997543333333333
No 173
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.00 E-value=8.4e-10 Score=103.88 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHh------cCCcccccC-CCccc------------ce-EEE----------------EE
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT------RADVDVQPY-AFTTK------------SL-FVG----------------HT 210 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~~-~~tT~------------~~-~~~----------------~~ 210 (275)
.+..|+++|.+||||||++++|. |.++.+... ++... +. ... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999997 455532111 11000 00 000 00
Q ss_pred EecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 211 DYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 211 ~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
...+.++.|+||||..+...+.+.++. .+..... +|.+++|+|++ .|+++..|++.|.+
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~--~i~~~~~-pd~vlLVvDA~--~gq~a~~~a~~f~~ 237 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMK--QISNVIH-PHEVILVIDGT--IGQQAYNQALAFKE 237 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHC-CSEEEEEEEGG--GGGGHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHH--HHHHhhc-CceEEEEEeCC--CchhHHHHHHHHHh
Confidence 012368999999998865433333332 2222222 58999999999 58899999988874
No 174
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.00 E-value=1.2e-09 Score=102.71 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-----------cccCC----------------------CcccceEEEEEEec
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-----------VQPYA----------------------FTTKSLFVGHTDYK 213 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-----------v~~~~----------------------~tT~~~~~~~~~~~ 213 (275)
...+|+++|.+|+|||||+|+|++.... .+..+ +.|.+.....+.++
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 3468999999999999999999854311 11122 33445455556667
Q ss_pred CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 214 YLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 214 ~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
+..+.+|||||..+ +.......+... |++|+|+|++++.
T Consensus 103 ~~~~~iiDtpGh~~--------f~~~~~~~~~~a-D~~ilVvDa~~g~ 141 (434)
T 1zun_B 103 KRKFIIADTPGHEQ--------YTRNMATGASTC-DLAIILVDARYGV 141 (434)
T ss_dssp SEEEEEEECCCSGG--------GHHHHHHHHTTC-SEEEEEEETTTCS
T ss_pred CceEEEEECCChHH--------HHHHHHHHHhhC-CEEEEEEECCCCC
Confidence 78899999999542 112223344444 9999999999754
No 175
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=1.3e-09 Score=92.75 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=57.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCee--EEEEeCCCCCCCCCCchhHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDHNIIEMCSITA 243 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~e~~~~~~ 243 (275)
...+|+++|.+|||||||+|++.+.... ...+++++.+.....+.+++.. +++|||+|... . +......
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~-------~-~~~l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-------E-NEWLHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-------H-HHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc-------h-hhhHHHH
Confidence 3468999999999999999999976543 4556666666666667777654 57899999531 0 1111111
Q ss_pred HHhccceeEEEEeCCCC
Q 035873 244 LAHLRSAVLFFLDISGS 260 (275)
Q Consensus 244 l~~~~d~il~viD~s~~ 260 (275)
....+|++++|+|.++.
T Consensus 108 ~~~~a~~~ilVydvt~~ 124 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDR 124 (211)
T ss_dssp CCCCCSEEEEEEETTCH
T ss_pred HHhhCCEEEEEEECCCH
Confidence 22235899999999864
No 176
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.99 E-value=4.1e-10 Score=100.74 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCee--EEEEeCCCCCCCCCCchhHHHHHHHHHH
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDHNIIEMCSITAL 244 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~e~~~~~~l 244 (275)
...+|+++|.+|||||||++++.+... ...+..|+.+.....+..++.. +++|||||..+.... ....+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 224 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL--------RPLSY 224 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT--------GGGGC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH--------HHHhc
Confidence 456899999999999999999997654 3445566766666666666665 459999996432211 11233
Q ss_pred HhccceeEEEEeCCCC
Q 035873 245 AHLRSAVLFFLDISGS 260 (275)
Q Consensus 245 ~~~~d~il~viD~s~~ 260 (275)
+.. |++++|+|++++
T Consensus 225 ~~~-d~~i~v~d~~~~ 239 (332)
T 2wkq_A 225 PQT-DVFLICFSLVSP 239 (332)
T ss_dssp TTC-SEEEEEEETTCH
T ss_pred cCC-CEEEEEEeCCCH
Confidence 444 999999999854
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.99 E-value=7.4e-11 Score=112.86 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALA 245 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (275)
+++++|+++|.+|+|||||+++|.+..+.....+++|.+....++.+++..+.+|||||..+..... . .. .
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~-~-------~~-~ 72 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR-A-------RG-A 72 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB-C-------SS-S
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH-H-------HH-H
Confidence 3567899999999999999999987665555556677766666666778899999999975432211 0 11 2
Q ss_pred hccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 246 HLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 246 ~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
..+|++++|+|+++.......+.+.+
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~ 98 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQH 98 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHH
T ss_pred hhCCEEEEEeecccCccHHHHHHHHH
Confidence 23499999999987544433344443
No 178
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.98 E-value=8e-10 Score=91.02 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=48.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC-cccccC-CCcccceEEEEEEe-----cCeeEEEEeCCCCCCCCCCchhHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD-VDVQPY-AFTTKSLFVGHTDY-----KYLRYQVIDTPGILDRPFEDHNIIEMCSI 241 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~-~~v~~~-~~tT~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~e~~~~ 241 (275)
.+|+++|.+|||||||+|+|.+.. .....+ |+.+.+.....+.+ ....+++|||||..+ ......
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE--------FYSTHP 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHH--------HHTTSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH--------HHHhhH
Confidence 479999999999999999999863 333333 22222322222222 245789999999531 111112
Q ss_pred HHHHhccceeEEEEeCCCC
Q 035873 242 TALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 242 ~~l~~~~d~il~viD~s~~ 260 (275)
..++.. |++++|+|.+++
T Consensus 75 ~~~~~~-~~~i~v~d~~~~ 92 (184)
T 2zej_A 75 HFMTQR-ALYLAVYDLSKG 92 (184)
T ss_dssp HHHHHS-EEEEEEEEGGGC
T ss_pred HHccCC-cEEEEEEeCCcc
Confidence 334444 899999999864
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.98 E-value=5.7e-10 Score=110.85 Aligned_cols=95 Identities=20% Similarity=0.102 Sum_probs=63.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc---CCc---------cccc------CCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR---ADV---------DVQP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~---~~~---------~v~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
...+|+++|.+|+|||||+|+|++ ... .+.+ .+++|.......+.|++..+.+|||||..+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 456899999999999999999984 211 0111 2466777777888899999999999998652
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
. .+ ...+++.+ |++|+|+|+++.........+.
T Consensus 89 ~----~~----~~~~l~~a-D~~llVvDa~~g~~~~~~~~~~ 121 (693)
T 2xex_A 89 T----VE----VERSLRVL-DGAVTVLDAQSGVEPQTETVWR 121 (693)
T ss_dssp C----HH----HHHHHHHC-SEEEEEEETTTBSCHHHHHHHH
T ss_pred H----HH----HHHHHHHC-CEEEEEECCCCCCcHHHHHHHH
Confidence 2 22 24556665 9999999999654433333333
No 180
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.96 E-value=5.7e-10 Score=98.26 Aligned_cols=59 Identities=31% Similarity=0.358 Sum_probs=41.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc-ccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
.+++++|.||||||||+|+|.+... .+++.|++|....... -+..+++|||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eCCCEEEEECCCcccCcC
Confidence 5899999999999999999998875 5888899998775322 245789999999997654
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.94 E-value=1.1e-09 Score=101.01 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=60.4
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRS 249 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (275)
.|+++|.+|+|||||+++|+ ..+.|.+.....+.+++..+.+|||||..+. -......++.. |
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f--------~~~~~~~~~~a-D 85 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT--------LKSLITALNIS-D 85 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTC--------HHHHHHHHHTC-S
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHH--------HHHHHHHHHHC-C
Confidence 89999999999999999998 3355666666777777889999999997541 11123444544 9
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHH
Q 035873 250 AVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 250 ~il~viD~s~~~g~~~~~q~~l~ 272 (275)
++++|+| +........+.+.++
T Consensus 86 ~ailVvd-~~g~~~qt~e~~~~~ 107 (370)
T 2elf_A 86 IAVLCIP-PQGLDAHTGECIIAL 107 (370)
T ss_dssp EEEEEEC-TTCCCHHHHHHHHHH
T ss_pred EEEEEEc-CCCCcHHHHHHHHHH
Confidence 9999999 654333344444433
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.94 E-value=1.4e-09 Score=104.95 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=57.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCccc----------------------ccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDV----------------------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v----------------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
..+|+++|.+|+|||||+++|++....+ ....+.|.......+.+++..+.+|||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 4589999999999999999998532111 112344555555667888899999999997
Q ss_pred CCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 226 LDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
.+.. . .....++.+ |++|+|+|+++..
T Consensus 93 ~df~----~----~~~~~l~~a-D~~IlVvDa~~g~ 119 (529)
T 2h5e_A 93 EDFS----E----DTYRTLTAV-DCCLMVIDAAKGV 119 (529)
T ss_dssp TTCC----H----HHHHGGGGC-SEEEEEEETTTCS
T ss_pred hhHH----H----HHHHHHHHC-CEEEEEEeCCccc
Confidence 5422 1 123455555 9999999999654
No 183
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.93 E-value=1.8e-09 Score=100.40 Aligned_cols=94 Identities=14% Similarity=0.004 Sum_probs=60.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc--------c--------ccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD--------V--------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~--------v--------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 232 (275)
.+|+++|.+|+|||||+++|++.... . ....+.|.+.....+.+++..+.+|||||..
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~------ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------ 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH------
Confidence 57999999999999999999863110 0 0123445555444455567899999999953
Q ss_pred hhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 233 HNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 233 ~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
.+.......++. +|++|+|+|+++.......+.+.+
T Consensus 78 --~f~~~~~~~~~~-aD~~ilVvda~~g~~~qt~e~l~~ 113 (397)
T 1d2e_A 78 --DYVKNMITGTAP-LDGCILVVAANDGPMPQTREHLLL 113 (397)
T ss_dssp --HHHHHHHHTSSC-CSEEEEEEETTTCSCHHHHHHHHH
T ss_pred --HHHHHHHhhHhh-CCEEEEEEECCCCCCHHHHHHHHH
Confidence 222222333333 499999999997543333333433
No 184
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.93 E-value=4.6e-09 Score=97.93 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=57.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEec-----------------------CeeEEEE
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYK-----------------------YLRYQVI 220 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~~-----------------------~~~~~li 220 (275)
...+|+++|.+|+|||||+++|+|.... ....++.|.+.......+. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 3468999999999999999999976432 2233566766554443331 1578999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 221 DTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
||||.. .+.......+.. +|++|+|+|+++.+
T Consensus 89 DtPGh~--------~f~~~~~~~~~~-~D~~ilVvda~~g~ 120 (410)
T 1kk1_A 89 DAPGHE--------ALMTTMLAGASL-MDGAILVIAANEPC 120 (410)
T ss_dssp ECSSHH--------HHHHHHHHCGGG-CSEEEEEEETTSCS
T ss_pred ECCChH--------HHHHHHHhhhhh-CCEEEEEEECCCCC
Confidence 999932 222222233333 49999999999764
No 185
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.92 E-value=1.2e-08 Score=93.64 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCchhhhhhhhcchhhHHhhcccchhhhhhhhHHHHHhhhcccCccccch
Q 035873 47 YMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYCC 126 (275)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~i~~~fp~i~~l~pF~~el~~il~~~d~~k~~l~~v~~a~~~~~~i~~~~~~~ik~~~~~~~~ 126 (275)
+..++..+.+.+. .+.+++.+...+| +.+++++|.+.|+..|. ....+...++.+.++. .. ..+...
T Consensus 60 l~~~l~~~~~~~~-~~~~l~~~~~~~~-~~~~~~~l~~~Ll~adv------~~~~~~~~~~~~~~~~----~~-~~~~~~ 126 (359)
T 2og2_A 60 VFSGFSKTRENLA-VIDELLLFWNLAE-TDRVLDELEEALLVSDF------GPKITVRIVERLREDI----MS-GKLKSG 126 (359)
T ss_dssp HHHHTHHHHHHHT-HHHHHHTTCCGGG-HHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHH----HT-TSCCSH
T ss_pred HHHHHHHHHHHHH-HHHHHhcCCCcCC-HHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHH----hh-cCCCCH
Confidence 5566777778877 7788776666666 44899999999999885 2222333333332222 11 111122
Q ss_pred hhHHHHHhhhHHHHHHhhCchHHHHHHHHHHhccC---CCC---CCCCceeEeeccCCCCHHHHHHHHhc------CCcc
Q 035873 127 KSLEVAALGRMCTVVKRIGPSLAYLEQIRQHMARL---PSI---DPNTRTILICWYPNVGKSSFMNKITR------ADVD 194 (275)
Q Consensus 127 ~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~l~~~---~~~---~~~~~~i~ivG~~nvGKStlin~l~~------~~~~ 194 (275)
+++.+.+...+. +.+... ..+ ...+..++++|++||||||+++.|++ .++.
T Consensus 127 ~~~~~~l~~~l~-----------------~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 127 SEIKDALKESVL-----------------EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp HHHHHHHHHHHH-----------------HHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHH-----------------HHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 223322222222 222111 111 12355899999999999999999974 2333
Q ss_pred cccCCCcccc-----------eEEEEEE--------------------ecCeeEEEEeCCCCCCCCCCchhHHHHHHHH-
Q 035873 195 VQPYAFTTKS-----------LFVGHTD--------------------YKYLRYQVIDTPGILDRPFEDHNIIEMCSIT- 242 (275)
Q Consensus 195 v~~~~~tT~~-----------~~~~~~~--------------------~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~- 242 (275)
+...+..... ...+.+. ..+.+..++||+|+.+.....+.++.++...
T Consensus 190 l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~i 269 (359)
T 2og2_A 190 MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAV 269 (359)
T ss_dssp EECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHH
Confidence 2222211100 0011110 0123568899999987654445555433222
Q ss_pred --HHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 243 --ALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 243 --~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
++...++-+++|+|++ .|.+...|++-|.
T Consensus 270 aral~~~P~e~lLvLDpt--tglD~~~~~~~~~ 300 (359)
T 2og2_A 270 GKIVSGAPNEILLVLDGN--TGLNMLPQAREFN 300 (359)
T ss_dssp HHHSTTCCSEEEEEEEGG--GGGGGHHHHHHHH
T ss_pred HHHHhcCCCceEEEEcCC--CCCCHHHHHHHHH
Confidence 2223356789999976 7888888887665
No 186
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.90 E-value=1.1e-09 Score=103.13 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=53.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC--Ccc-----------------------------cccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA--DVD-----------------------------VQPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~--~~~-----------------------------v~~~~~tT~~~~~~~~~~~~~~ 216 (275)
..+|+++|.+|+|||||+++|++. .+. ....+++|.+.....+.+.+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 468999999999999999999853 111 0013466777777777788889
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
+.+|||||..+ +.......++. +|++++|+|+++.
T Consensus 86 ~~iiDtpG~~~--------f~~~~~~~~~~-aD~~ilVvDa~~g 120 (435)
T 1jny_A 86 FTIIDAPGHRD--------FVKNMITGASQ-ADAAILVVSAKKG 120 (435)
T ss_dssp EEECCCSSSTT--------HHHHHHHTSSC-CSEEEEEEECSTT
T ss_pred EEEEECCCcHH--------HHHHHHhhhhh-cCEEEEEEECCCC
Confidence 99999999653 11222334444 4999999999974
No 187
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.90 E-value=7.3e-10 Score=104.28 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=59.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhc------CCccc-ccC------------------------CCcccceE----EEEEEe
Q 035873 168 TRTILICWYPNVGKSSFMNKITR------ADVDV-QPY------------------------AFTTKSLF----VGHTDY 212 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~------~~~~v-~~~------------------------~~tT~~~~----~~~~~~ 212 (275)
+..|+++|.+||||||++++|.+ .++.+ ..- +++|.++. .....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999975 33321 111 11233221 000012
Q ss_pred cCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHh--ccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 213 KYLRYQVIDTPGILDRPFEDHNIIEMCSITALAH--LRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 213 ~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~--~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.+.++.++||||...... ..+. ....+.. .+|.++||+|++ .|++...+++.|+
T Consensus 179 ~~~D~vIIDT~G~~~~~~---~l~~--~l~~i~~~~~~d~vllVvda~--~g~~~~~~~~~~~ 234 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEK---GLLE--EMKQIKEITNPDEIILVIDGT--IGQQAGIQAKAFK 234 (432)
T ss_dssp SSCSEEEEECCCSCSSHH---HHHH--HHHHTTSSSCCSEEEEEEEGG--GGGGHHHHHHHHH
T ss_pred hCCCEEEEcCCCCccccH---HHHH--HHHHHHHHhcCcceeEEeecc--ccHHHHHHHHHHh
Confidence 456899999999875211 1111 1122222 258999999998 4667777777665
No 188
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.90 E-value=3e-09 Score=105.64 Aligned_cols=95 Identities=21% Similarity=0.124 Sum_probs=61.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc---CCc---ccc------c------CCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR---ADV---DVQ------P------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~---~~~---~v~------~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
...+|+++|.+|+|||||+++|+. .-. .+. + ..+.|.......+.|++..+.+|||||..+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 456899999999999999999973 110 111 1 3356666777778888999999999997641
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
.. ....+++.+ |++|+|+|+++.........+.
T Consensus 91 ----~~----~~~~~l~~a-D~~ilVvDa~~g~~~~t~~~~~ 123 (691)
T 1dar_A 91 ----TI----EVERSMRVL-DGAIVVFDSSQGVEPQSETVWR 123 (691)
T ss_dssp ----HH----HHHHHHHHC-SEEEEEEETTTCSCHHHHHHHH
T ss_pred ----HH----HHHHHHHHC-CEEEEEEECCCCcchhhHHHHH
Confidence 11 234556665 9999999999654433333333
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.90 E-value=1.1e-09 Score=102.80 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHh------cCCcccccC--------------------CCcccceE----------EEEE
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT------RADVDVQPY--------------------AFTTKSLF----------VGHT 210 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~------~~~~~v~~~--------------------~~tT~~~~----------~~~~ 210 (275)
.+..|+++|.+||||||++++|. |.++.+... |..+.... ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999997 455432111 11000000 0000
Q ss_pred EecCeeEEEEeCCCCCC--CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 211 DYKYLRYQVIDTPGILD--RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 211 ~~~~~~~~liDTpG~~~--~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.+.+.++.++||||... .....+.++. .+.... .+|.+++|+|++ .|+++.+|++.|++
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~--~i~~~~-~pd~vlLVlDa~--~gq~a~~~a~~f~~ 236 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMK--EMYDVL-KPDDVILVIDAS--IGQKAYDLASRFHQ 236 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHH--HHHHHH-CCSEEEEEEEGG--GGGGGHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHH--HHHHhh-CCcceEEEEeCc--cchHHHHHHHHHhc
Confidence 11256899999999876 3333333222 222222 258999999998 67888899888873
No 190
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.89 E-value=2.2e-09 Score=99.94 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=52.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccc--------------e-----EEEEEEecCeeEEEEeCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKS--------------L-----FVGHTDYKYLRYQVIDTPGIL 226 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~--------------~-----~~~~~~~~~~~~~liDTpG~~ 226 (275)
...+|+++|.+|+|||||+|+|++.... ...++.+|.. . ...........+.+|||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4568999999999999999999985432 1111111100 0 000000112578999999942
Q ss_pred CCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 227 DRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
.+.......+... |++++|+|++++.
T Consensus 87 --------~~~~~~~~~~~~~-D~~ilVvda~~~~ 112 (403)
T 3sjy_A 87 --------VLMATMLSGAALM-DGAILVVAANEPF 112 (403)
T ss_dssp --------GGHHHHHHHHTTC-SEEEEEEETTSCS
T ss_pred --------HHHHHHHHHHhhC-CEEEEEEECCCCC
Confidence 2222334455554 9999999999764
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.89 E-value=3.1e-09 Score=97.37 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
...++|+++|.||||||||+++|+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999996
No 192
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.89 E-value=1.3e-09 Score=98.10 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=65.1
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc------CCcccccCCCcccc-----------eEEEEEE------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR------ADVDVQPYAFTTKS-----------LFVGHTD------------------ 211 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~~~tT~~-----------~~~~~~~------------------ 211 (275)
....++++|++||||||+++.|.+ .++.+...+..... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 355899999999999999999973 23322221111000 0001110
Q ss_pred -ecCeeEEEEeCCCCCCCCCCchhHHHHHHHH---HHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 212 -YKYLRYQVIDTPGILDRPFEDHNIIEMCSIT---ALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 212 -~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~---~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
..+.++.++||+|..+.....+.++.++... ++...|+.+++++|++ .++++.+|+.-|.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~--t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV--TGQNGLEQAKKFH 244 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT--BCTHHHHHHHHHH
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHH--HHHHHHHHHHHHH
Confidence 1234678999999987665555555544322 2234467889999988 7788888887764
No 193
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.87 E-value=3.9e-09 Score=101.66 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=50.1
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEE------EEEe----cCeeEEEEeCCCCCCCCCCchhH
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG------HTDY----KYLRYQVIDTPGILDRPFEDHNI 235 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~------~~~~----~~~~~~liDTpG~~~~~~~~~~~ 235 (275)
....+|+++|.+|||||||+|+|++........|+........ .+.. .+..+.+|||||......-
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~---- 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS---- 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH----
Confidence 3567999999999999999999998875422222221111111 1111 1467999999995432211
Q ss_pred HHHHHHHHHHhccceeEEEEeCCC
Q 035873 236 IEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 236 ~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
....+++. |++++|+|++.
T Consensus 115 ----~~~~l~~~-d~ii~V~D~s~ 133 (535)
T 3dpu_A 115 ----HQFFMTRS-SVYMLLLDSRT 133 (535)
T ss_dssp ----CHHHHHSS-EEEEEEECGGG
T ss_pred ----HHHHccCC-cEEEEEEeCCC
Confidence 12345554 99999999984
No 194
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.85 E-value=1.1e-09 Score=99.48 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=64.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc------CCcccccCCCcccc-----------eEEEEE-------------------
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR------ADVDVQPYAFTTKS-----------LFVGHT------------------- 210 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~~~tT~~-----------~~~~~~------------------- 210 (275)
.+..++++|++|+||||+++.|++ .++.+...+..... .....+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 456899999999999999999984 23322211111100 000000
Q ss_pred EecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 211 DYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 211 ~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
...+.++.++||+|..+.....+.++...+ .+ -.+|-.++++|++ .++++.+|++.|.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~-ra--l~~de~llvLDa~--t~~~~~~~~~~~~ 265 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIA-RV--TKPNLVIFVGDAL--AGNAIVEQARQFN 265 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHH-HH--HCCSEEEEEEEGG--GTTHHHHHHHHHH
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHH-HH--hcCCCCEEEEecH--HHHHHHHHHHHHH
Confidence 012346788999999876655555554321 11 2368899999988 6789999988876
No 195
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.85 E-value=9.8e-09 Score=95.68 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=53.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc---cccCCCcccceEEEEEEe---------------c--------CeeEEEE
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDY---------------K--------YLRYQVI 220 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~---v~~~~~tT~~~~~~~~~~---------------~--------~~~~~li 220 (275)
...+|+++|.+++|||||+++|++.... ....++.|.+.......+ . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 3568999999999999999999976432 222345566554333222 1 1578999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 221 DTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
||||.. .+.......+. .+|++|+|+|++++.
T Consensus 87 DtPGh~--------~f~~~~~~~~~-~~D~~ilVvda~~g~ 118 (408)
T 1s0u_A 87 DSPGHE--------TLMATMLSGAS-LMDGAILVIAANEPC 118 (408)
T ss_dssp ECSSHH--------HHHHHHHTTCS-CCSEEEEEEETTSCS
T ss_pred ECCCHH--------HHHHHHHHhHh-hCCEEEEEEECCCCC
Confidence 999932 22111111222 249999999999764
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.84 E-value=7.1e-09 Score=94.48 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh------cCCcc-cccCCCcccc--eEEE--------------E-------------
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT------RADVD-VQPYAFTTKS--LFVG--------------H------------- 209 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~------~~~~~-v~~~~~tT~~--~~~~--------------~------------- 209 (275)
.....|+++|+||+|||||+|.|+ +.++. +...|++|.. ...+ .
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 356789999999999999999996 33433 3333333321 0000 0
Q ss_pred ----------EEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCC
Q 035873 210 ----------TDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISG 259 (275)
Q Consensus 210 ----------~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~ 259 (275)
+.+.+.++.+|||||+.+. .. . +...+|++++|+|++.
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~------~~-----~-~~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQS------ET-----E-VARMVDCFISLQIAGG 181 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH------HH-----H-HHTTCSEEEEEECC--
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccch------HH-----H-HHHhCCEEEEEEeCCc
Confidence 0144678999999998641 11 1 2245599999999974
No 197
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.83 E-value=2.4e-10 Score=111.66 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=39.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-------------------------------cccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-------------------------------VQPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-------------------------------v~~~~~tT~~~~~~~~~~~~~~ 216 (275)
..+|+++|.+|+|||||+|+|++.... ....+++|.+.....+.+++..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~ 256 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeE
Confidence 457999999999999999999632100 1114578888888888888889
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
+.||||||..+...+. ...+.. +|++|+|+|++++
T Consensus 257 i~iiDTPGh~~f~~~~--------~~~~~~-aD~alLVVDa~~g 291 (592)
T 3mca_A 257 YEIGDAPGHRDFISGM--------IAGASS-ADFAVLVVDSSQN 291 (592)
T ss_dssp --CCEEESSSEEEEEC--------CC--------CCSEEEEEEC
T ss_pred EEEEECCChHHHHHHH--------HHHHhh-CCEEEEEEECCCC
Confidence 9999999976432111 122333 4999999999864
No 198
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.83 E-value=2.3e-09 Score=101.58 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=59.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC--cc-----------------------c------ccCCCcccceEEEEEEecCee
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD--VD-----------------------V------QPYAFTTKSLFVGHTDYKYLR 216 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~--~~-----------------------v------~~~~~tT~~~~~~~~~~~~~~ 216 (275)
..+|+++|.+|+|||||+|+|++.. +. + ....+.|.+.....+.+++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4689999999999999999998531 10 0 012456777776777778889
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 217 YQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 217 ~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
+.+|||||..+ +.......+.. +|++|+|+|+++.
T Consensus 87 ~~iiDtPGh~~--------f~~~~~~~~~~-aD~~ilVvda~~g 121 (458)
T 1f60_A 87 VTVIDAPGHRD--------FIKNMITGTSQ-ADCAILIIAGGVG 121 (458)
T ss_dssp EEEEECCCCTT--------HHHHHHHSSSC-CSEEEEEEECSHH
T ss_pred EEEEECCCcHH--------HHHHHHhhhhh-CCEEEEEEeCCcC
Confidence 99999999531 22222334444 4999999999853
No 199
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.81 E-value=1.9e-08 Score=100.04 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=62.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCc------cc------cc------CCCcccceEEEEEEecC-------eeEEEEe
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADV------DV------QP------YAFTTKSLFVGHTDYKY-------LRYQVID 221 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~------~v------~~------~~~tT~~~~~~~~~~~~-------~~~~liD 221 (275)
...+|+++|.+|+|||||+++|..... .+ .+ ..+.|.......+.|++ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 456899999999999999999964211 01 11 12345555556677776 7899999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHH
Q 035873 222 TPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269 (275)
Q Consensus 222 TpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~ 269 (275)
|||..+.. . ....+++.+ |++|+|+|+++.........+
T Consensus 89 TPG~~df~----~----~~~~~l~~a-D~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 89 TPGHVDFT----I----EVERSMRVL-DGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred CCCccchH----H----HHHHHHHHC-CEEEEEEeCCCCCcHHHHHHH
Confidence 99976421 1 224556655 999999999965433333333
No 200
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.79 E-value=2.6e-09 Score=104.24 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=58.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcccccCCCcccceEEEEEEec------------------CeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------------YLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTpG~~~~ 228 (275)
+.++|+++|.+|+|||||+++|++..+......+.|.........+. ...+++|||||..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46789999999999999999998764422111133333322333221 115899999997654
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.... . ..++ .+|++++|+|++++......+.++++
T Consensus 84 ~~~~-~-------r~~~-~aD~aILVvDa~~Gv~~qT~e~l~~l 118 (594)
T 1g7s_A 84 TTLR-K-------RGGA-LADLAILIVDINEGFKPQTQEALNIL 118 (594)
T ss_dssp TTSB-C-------SSSB-SCSEEEEEEETTTCCCHHHHHHHHHH
T ss_pred HHHH-H-------HHHh-hCCEEEEEEECCCCccHhHHHHHHHH
Confidence 3221 1 1122 34999999999975433333344433
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.78 E-value=2e-08 Score=94.47 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=61.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHh-------cCCcccccC-CCcccc------------eE--E---------------EE
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT-------RADVDVQPY-AFTTKS------------LF--V---------------GH 209 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~-------~~~~~v~~~-~~tT~~------------~~--~---------------~~ 209 (275)
.+..|+++|.+||||||+...|. |.++.+.+. ++.+.. .. . ..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999987 666542221 111100 00 0 00
Q ss_pred EEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 210 TDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 210 ~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
+.+.+.++.|+||||..+.....++++ ..... ...++.+++|+|++ .|+++..+++.|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L--~~~~~-~~~p~~vllVvda~--~g~~~~~~~~~f~ 237 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEI--KQVHA-SINPVETLFVVDAM--TGQDAANTAKAFN 237 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHH--HHHHH-HSCCSEEEEEEETT--BCTTHHHHHHHHH
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHH--HHHHH-hhcCcceeEEeecc--hhHHHHHHHHHHh
Confidence 011356899999999875332222211 11111 12368999999998 5788888887765
No 202
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.76 E-value=1.6e-08 Score=98.81 Aligned_cols=94 Identities=21% Similarity=0.170 Sum_probs=53.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCccc---------------ccCCCcccceEEEEEEecC-----eeEEEEeCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDV---------------QPYAFTTKSLFVGHTDYKY-----LRYQVIDTPGILD 227 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v---------------~~~~~tT~~~~~~~~~~~~-----~~~~liDTpG~~~ 227 (275)
..+|+++|.+++|||||+++|+.....+ ....+.|.......+.|.+ ..+.+|||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4589999999999999999997532111 0113445555555666652 5789999999754
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
. .......++.+ |++|+|+|+++.........+.
T Consensus 84 F--------~~ev~~~l~~a-D~aILVVDa~~gv~~qt~~~~~ 117 (599)
T 3cb4_D 84 F--------SYEVSRSLAAC-EGALLVVDAGQGVEAQTLANCY 117 (599)
T ss_dssp G--------HHHHHHHHHHC-SEEEEEEETTTCCCTHHHHHHH
T ss_pred H--------HHHHHHHHHHC-CEEEEEEECCCCCCHHHHHHHH
Confidence 1 11223456666 9999999999765444443343
No 203
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.76 E-value=5.4e-09 Score=99.22 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=49.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc-------------------------c------ccCCCcccceEEEEEEecCe
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD-------------------------V------QPYAFTTKSLFVGHTDYKYL 215 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~-------------------------v------~~~~~tT~~~~~~~~~~~~~ 215 (275)
...+|+++|.+|+|||||+++|++.... + ....+.|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3468999999999999999999642110 0 01234566665566777888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC
Q 035873 216 RYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS 260 (275)
Q Consensus 216 ~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~ 260 (275)
.+.+|||||..+-. ......+.. +|++|+|+|+++.
T Consensus 122 ~~~iiDtPGh~~f~--------~~~~~~~~~-aD~~ilVvDa~~g 157 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV--------TNMINGASQ-ADIGVLVISARRG 157 (467)
T ss_dssp EEEECCCCC-------------------TTS-CSEEEEEEECSTT
T ss_pred EEEEEECCCcHHHH--------HHHHhhccc-CCEEEEEEeCCcC
Confidence 99999999965321 111233333 4999999999965
No 204
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.75 E-value=1.4e-08 Score=99.08 Aligned_cols=86 Identities=23% Similarity=0.216 Sum_probs=52.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc---------cc------cCCCcccceEEEEEEecC-----eeEEEEeCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD---------VQ------PYAFTTKSLFVGHTDYKY-----LRYQVIDTPGILD 227 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~---------v~------~~~~tT~~~~~~~~~~~~-----~~~~liDTpG~~~ 227 (275)
..+|+++|.+|+|||||+++|++.... +. ...+.|.......+.|.. ..+.+|||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 458999999999999999999742111 00 112334444444555542 5788999999764
Q ss_pred CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCC
Q 035873 228 RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (275)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g 262 (275)
.. . .....++.+ |++|+|+|+++...
T Consensus 86 F~----~----ev~r~l~~a-D~aILVVDa~~gv~ 111 (600)
T 2ywe_A 86 FS----Y----EVSRALAAC-EGALLLIDASQGIE 111 (600)
T ss_dssp GH----H----HHHHHHHTC-SEEEEEEETTTBCC
T ss_pred HH----H----HHHHHHHhC-CEEEEEEECCCCcc
Confidence 21 1 223455655 99999999996543
No 205
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=2.9e-08 Score=91.14 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcccccCC-------CcccceE--EEEEEecCe--eEEEEeCCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDVQPYA-------FTTKSLF--VGHTDYKYL--RYQVIDTPGILDR 228 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v~~~~-------~tT~~~~--~~~~~~~~~--~~~liDTpG~~~~ 228 (275)
..+|+++|.+|+|||||+|+|.+.......+. ..|.... ...+.+.+. .+.+|||||+.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 45799999999999999999987654432221 1222222 222233343 6899999999654
No 206
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.72 E-value=2.5e-08 Score=94.01 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=64.4
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcC---------------CcccccCCCcccceEEEEEEec-----------CeeEEE
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRA---------------DVDVQPYAFTTKSLFVGHTDYK-----------YLRYQV 219 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~---------------~~~v~~~~~tT~~~~~~~~~~~-----------~~~~~l 219 (275)
.....|+|+|.+++|||||+|.|.|. +...-....||...+.|.+.|. +..+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34568999999999999999999864 2222222336777777887774 246899
Q ss_pred EeCCCCCCCCCCchhHHHHHHHHHHHhc-cceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 220 IDTPGILDRPFEDHNIIEMCSITALAHL-RSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 220 iDTpG~~~~~~~~~~~~e~~~~~~l~~~-~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
+||||+.+... +.-....+-++.-+ .++++|-+. ........++++++-+
T Consensus 145 lDTeG~~~~~~---~~~~d~~ifal~~lLSs~~IyN~~--~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 145 MDTQGTFDSQS---TLRDSATVFALSTMISSIQVYNLS--QNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEECCCSSHH---HHHHHHHHHHHHHHHCSEEEEEES--SSCCHHHHHHHHHHHH
T ss_pred EcCCccccccc---chhhhHHHHHHHHHHhhHHHHhhc--ccccHHHHHHHHHHHH
Confidence 99999976432 11111222333322 355555553 3355566777776543
No 207
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.71 E-value=1.4e-08 Score=102.79 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=57.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCccc----------------ccCCCcccceEEEEEEec----------------Ce
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVDV----------------QPYAFTTKSLFVGHTDYK----------------YL 215 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~v----------------~~~~~tT~~~~~~~~~~~----------------~~ 215 (275)
..+|+++|.+|+|||||+++|++....+ ....+.|.......+.|. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4589999999999999999998542110 012234554545555564 56
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC
Q 035873 216 RYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC 261 (275)
Q Consensus 216 ~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~ 261 (275)
.+.+|||||..+.. .+ ...+++.+ |++|+|+|+++..
T Consensus 99 ~i~liDTPG~~df~----~~----~~~~l~~a-D~ailVvDa~~g~ 135 (842)
T 1n0u_A 99 LINLIDSPGHVDFS----SE----VTAALRVT-DGALVVVDTIEGV 135 (842)
T ss_dssp EEEEECCCCCCSSC----HH----HHHHHHTC-SEEEEEEETTTBS
T ss_pred eEEEEECcCchhhH----HH----HHHHHHhC-CEEEEEEeCCCCC
Confidence 78999999987632 22 24556665 9999999999654
No 208
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.71 E-value=3.2e-08 Score=102.22 Aligned_cols=97 Identities=14% Similarity=0.005 Sum_probs=59.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc----------------cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD----------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~----------------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
...+|+++|.+|+|||||+++|++.... .....+.|.+.....+..++..+.+|||||..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe---- 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA---- 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH----
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH----
Confidence 4568999999999999999999863110 01123445554444455567899999999943
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
.+.......+.. +|++|+|+|+++.......+.+.++
T Consensus 371 ----dF~~~mi~gas~-AD~aILVVDAtdGv~~QTrEhL~ll 407 (1289)
T 3avx_A 371 ----DYVKNMITGAAQ-MDGAILVVAATDGPMPQTREHILLG 407 (1289)
T ss_dssp ----HHHHHHHHTSCC-CSEEEEEEETTTCSCTTHHHHHHHH
T ss_pred ----HHHHHHHHHHhh-CCEEEEEEcCCccCcHHHHHHHHHH
Confidence 222222333333 4999999999976544444444443
No 209
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.66 E-value=1.1e-07 Score=94.02 Aligned_cols=95 Identities=18% Similarity=0.084 Sum_probs=63.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCCcc------c------cc------CCCcccceEEEEEEecCeeEEEEeCCCCCCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRADVD------V------QP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~~~------v------~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 228 (275)
...+|+++|.+|+|||||+++|++.... + .+ ..+.|.......+.+.+..+++|||||..+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3468999999999999999999843211 1 11 1244556666777788889999999996531
Q ss_pred CCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHH
Q 035873 229 PFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAA 270 (275)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~ 270 (275)
......+++.+ |++++|+|+++........-++
T Consensus 88 --------~~~~~~~l~~a-d~~ilVvD~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 88 --------VGEIRGALEAA-DAALVAVSAEAGVQVGTERAWT 120 (665)
T ss_dssp --------HHHHHHHHHHC-SEEEEEEETTTCSCHHHHHHHH
T ss_pred --------HHHHHHHHhhc-CcEEEEEcCCcccchhHHHHHH
Confidence 12234556655 9999999998654333333333
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.62 E-value=7e-08 Score=86.38 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=59.7
Q ss_pred CceeEeeccCCCCHHHHHHHHh------cCCcccccCCCc-c-----------------------cceE------EEEEE
Q 035873 168 TRTILICWYPNVGKSSFMNKIT------RADVDVQPYAFT-T-----------------------KSLF------VGHTD 211 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~------~~~~~v~~~~~t-T-----------------------~~~~------~~~~~ 211 (275)
...++++|.+|+||||+++.|. |.++.+.+.+.. . .++. ...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999987 444432221110 0 0000 00001
Q ss_pred ecCeeEEEEeCCCCCC--CCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 212 YKYLRYQVIDTPGILD--RPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 212 ~~~~~~~liDTpG~~~--~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
+.+.++.++||||... .....+.++ ..+.... .+|.+++|+|++ .|++..++++.|.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el--~~i~~~~-~~d~vllVvda~--~g~~~~~~~~~~~ 236 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEM--KNIYEAI-KPDEVTLVIDAS--IGQKAYDLASKFN 236 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHH--HHHHHHH-CCSEEEEEEEGG--GGGGHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHH--HHHHHHh-cCCEEEEEeeCC--chHHHHHHHHHHH
Confidence 1455899999999875 211111111 1122222 358999999998 5788888887665
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.61 E-value=8.3e-08 Score=87.33 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
....++++|+||+|||||+|.|+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 212
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.61 E-value=1.3e-07 Score=85.59 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=53.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc-cccCCCcccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhcc
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLR 248 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (275)
+|+++|..|||||||++.+.+.... .......|.+.....+. ....+++|||||..+-..+. + .....++..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~---l--~~~~yyr~a- 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS---Y--DSERLFKSV- 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS---H--HHHHHHTTC-
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh---h--hhhhhccCC-
Confidence 4789999999999999988765432 11112234444333331 23589999999976532110 1 122345555
Q ss_pred ceeEEEEeCCCC
Q 035873 249 SAVLFFLDISGS 260 (275)
Q Consensus 249 d~il~viD~s~~ 260 (275)
++++||+|+++.
T Consensus 74 ~~~IlV~Ditd~ 85 (331)
T 3r7w_B 74 GALVYVIDSQDE 85 (331)
T ss_dssp SEEEEECCCSSC
T ss_pred CEEEEEEECCch
Confidence 999999999976
No 213
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=87.19 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.0
Q ss_pred CCCCceeEeeccC---------CCCHHHHHHHHhcC
Q 035873 165 DPNTRTILICWYP---------NVGKSSFMNKITRA 191 (275)
Q Consensus 165 ~~~~~~i~ivG~~---------nvGKStlin~l~~~ 191 (275)
.....+|+++|.+ |||||||+|+|++.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 3456799999999 99999999999984
No 214
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.56 E-value=8.8e-08 Score=92.66 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=64.3
Q ss_pred CceeEeeccCCCCHHHHHHHHh---cC----------C---cc------cccCCCcccceEEEEEEecCeeEEEEeCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKIT---RA----------D---VD------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~---~~----------~---~~------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 225 (275)
..+|+|+|+..+|||||..+|. |. . -. ....-+.|.......+.|++..+.|+||||.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 3589999999999999999985 11 0 00 1112345666667788999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 226 LDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
.|... +. ..+|+-+ |++|+|+|+.++.....+.-|+.
T Consensus 111 vDF~~----Ev----~raL~~~-DgAvlVvda~~GV~~qT~~v~~~ 147 (548)
T 3vqt_A 111 QDFSE----DT----YRVLTAV-DSALVVIDAAKGVEAQTRKLMDV 147 (548)
T ss_dssp GGCSH----HH----HHHHHSC-SEEEEEEETTTBSCHHHHHHHHH
T ss_pred HHHHH----HH----HHHHHhc-CceEEEeecCCCcccccHHHHHH
Confidence 87552 22 4567766 99999999997654444444443
No 215
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.51 E-value=2.3e-07 Score=86.91 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=58.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc------CCcccccCCCccc-------------ce-EEEE-------------E-E-
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR------ADVDVQPYAFTTK-------------SL-FVGH-------------T-D- 211 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~~~tT~-------------~~-~~~~-------------~-~- 211 (275)
.+..|+++|.+|+||||++..|.+ .++.+...+.... +. .... + .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456789999999999999998872 2332111110000 00 0000 0 0
Q ss_pred -ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 212 -YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 212 -~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
..+.++.|+||||........+.++ ..+.... .+|.+++|+|++ .++++.++++.|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el--~~i~~~~-~pd~vlLVvDa~--tgq~av~~a~~f~ 234 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGEL--ARLKEVL-GPDEVLLVLDAM--TGQEALSVARAFD 234 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHH--HHHHHHH-CCSEEEEEEEGG--GTTHHHHHHHHHH
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHH--HHhhhcc-CCceEEEEEecc--chHHHHHHHHHHH
Confidence 1345799999999875421112211 1111111 358899999998 5788888887765
No 216
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.38 E-value=1.7e-07 Score=83.83 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
....++++|.+|+||||++..|+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 217
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.37 E-value=1.6e-07 Score=92.38 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=65.3
Q ss_pred ceeEeeccCCCCHHHHHHHHh---cCCc---cc------ccC------CCcccceEEEEEEecCeeEEEEeCCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKIT---RADV---DV------QPY------AFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~---~~~~---~v------~~~------~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 230 (275)
..|+|+|+..+|||||..+|. |.-. .+ .++ -+.|.......+.|++..+.++||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 479999999999999999985 2211 11 111 1445556666778999999999999987643
Q ss_pred CchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHH
Q 035873 231 EDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAAL 271 (275)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l 271 (275)
.+. ..+|+-+ |++++|+|+.++.....+.-|+.
T Consensus 82 ---~Ev----~raL~~~-DgavlVVDa~~GV~~qT~~v~~~ 114 (638)
T 3j25_A 82 ---AEV----YRSLSVL-DGAILLISAKDGVQAQTRILFHA 114 (638)
T ss_dssp ---HHH----HHHHTTC-SEEECCEESSCTTCSHHHHHHHH
T ss_pred ---HHH----HHHHHHh-CEEEEEEeCCCCCcHHHHHHHHH
Confidence 222 4566666 99999999997765444444443
No 218
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.29 E-value=1.5e-06 Score=77.71 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-..+|+++|.+|||||||+|.|.+..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~ 42 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTD 42 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC--
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998763
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.20 E-value=3.3e-06 Score=74.37 Aligned_cols=61 Identities=26% Similarity=0.375 Sum_probs=35.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc-cc-------cCCCcccceEEEEEEec---CeeEEEEeCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD-VQ-------PYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRP 229 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~-v~-------~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~ 229 (275)
++++++|.+|+|||||+|.|+|.... .+ +.+.++.....+.+.-. ...+.++|+||+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhc
Confidence 47999999999999999999974321 11 12222222222222111 1267999999997643
No 220
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.16 E-value=8.7e-07 Score=74.52 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.+.|+++|.+|||||||+|+|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.14 E-value=6.1e-06 Score=77.25 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=36.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCcc---ccc-CCCcccceEEEEEEecC--eeEEEEeCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRADVD---VQP-YAFTTKSLFVGHTDYKY--LRYQVIDTPGILDR 228 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~~---v~~-~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~ 228 (275)
+.++++|.+|+|||||+|.|+|..+. +.. .++.+...........+ ..+.++||||+...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 35999999999999999999987542 111 23333322111111112 26799999999764
No 222
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.13 E-value=5e-06 Score=82.70 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC--------Ccc----c------ccCCCcccceEEEEEEec-------CeeEEEEe
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA--------DVD----V------QPYAFTTKSLFVGHTDYK-------YLRYQVID 221 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~--------~~~----v------~~~~~tT~~~~~~~~~~~-------~~~~~liD 221 (275)
+..+|+|+|+..+|||||..+|... .+. + ...-+.|.......+.|. +..+.|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3468999999999999999988511 111 1 111234555555566664 35789999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCC
Q 035873 222 TPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGY 263 (275)
Q Consensus 222 TpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~ 263 (275)
|||..|.. .+. ..+|+-+ |++|+|+|+.+....
T Consensus 92 TPGHvDF~----~Ev----~~aLr~~-DgavlvVDaveGV~~ 124 (709)
T 4fn5_A 92 TPGHVDFT----IEV----ERSLRVL-DGAVVVFCGTSGVEP 124 (709)
T ss_dssp CCSCTTCH----HHH----HHHHHHC-SEEEEEEETTTCSCH
T ss_pred CCCCcccH----HHH----HHHHHHh-CeEEEEEECCCCCch
Confidence 99988643 232 4567766 999999999976544
No 223
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.01 E-value=1.1e-06 Score=76.05 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHh-----cCCcc
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT-----RADVD 194 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~-----~~~~~ 194 (275)
....++++|.+||||||+++.|+ |.++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45678899999999999999998 76654
No 224
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.98 E-value=8.3e-06 Score=72.69 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=56.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc------CCcccccCCCccc-----------ceEEEEE-----------------E-
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR------ADVDVQPYAFTTK-----------SLFVGHT-----------------D- 211 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~------~~~~v~~~~~tT~-----------~~~~~~~-----------------~- 211 (275)
....++++|.+|+||||++..|.+ .++.+...+.... ......+ .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999988863 2332111110000 0000000 0
Q ss_pred -ecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 212 -YKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 212 -~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
..+.++.++||||........++++.. ..... .+|.+++|+|+. .+++..++++.|+
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~--~~~~~-~~~~~~lv~~~~--~~~~~~~~~~~~~ 234 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELAR--LKEVL-GPDEVLLVLDAM--TGQEALSVARAFD 234 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHH--HHHHH-CCSEEEEEEEGG--GTHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHH--Hhhhc-CCCEEEEEEeCC--CcHHHHHHHHHHh
Confidence 134579999999977432111222211 11111 368889999987 4566667766554
No 225
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.89 E-value=1.4e-05 Score=74.65 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcCCcccccC-------CCcccceEEEE-EEecC--eeEEEEeCCCCCCC
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRADVDVQPY-------AFTTKSLFVGH-TDYKY--LRYQVIDTPGILDR 228 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~~~~v~~~-------~~tT~~~~~~~-~~~~~--~~~~liDTpG~~~~ 228 (275)
.-...|+++|.+|||||||+|.|+|.......+ +.++.....+. +...+ ..+++|||||+...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 345678999999999999999999876421111 11111111111 11122 26789999998754
No 226
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.82 E-value=0.0001 Score=69.35 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=59.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc------------------CCccccc-CCCcccceEEEEE----Ee-cC--eeEEEE
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR------------------ADVDVQP-YAFTTKSLFVGHT----DY-KY--LRYQVI 220 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~------------------~~~~v~~-~~~tT~~~~~~~~----~~-~~--~~~~li 220 (275)
....|+|+|.+++|||+|+|.|.+ ....+++ ...+|+++..+.. .. ++ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 445788999999999999996641 1122222 1235666544321 11 22 358999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 221 DTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
||.|+.+............++..+ +.+.+||=...+ ...+..+|++++-+
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~L--LSS~~IyN~~~~--i~~~~L~~L~~~te 195 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTM--ISSIQVYNLSQN--VQEDDLQHLQLFTE 195 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHH--HCSEEEEEEESS--CCHHHHHHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHH--Hhhheeeccccc--CCHHHHHHHHHHHH
Confidence 999998765432222222222222 235555555443 66788889888754
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.78 E-value=5.9e-06 Score=74.19 Aligned_cols=57 Identities=26% Similarity=0.298 Sum_probs=34.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC-cccccCC-------CcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD-VDVQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~-~~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
..++++|.+|||||||+|.|.|.. +..+... .||..... .... ...++||||+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccccc
Confidence 378999999999999999999754 2333222 34544322 2222 35789999987643
No 228
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.76 E-value=6.1e-05 Score=67.19 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=34.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC-cccccCCC-------cccceEEEEEEecCeeEEEEeCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRAD-VDVQPYAF-------TTKSLFVGHTDYKYLRYQVIDTPGILD 227 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~-~~v~~~~~-------tT~~~~~~~~~~~~~~~~liDTpG~~~ 227 (275)
.++++|++|||||||+|.|. .. +..+.... +|..... .... .-..++||||+..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPFG-KGSFVGDTPGFSK 228 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEET-TTEEEESSCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEcC-CCcEEEECcCcCc
Confidence 78999999999999999998 43 33333322 4443321 2221 2347899999863
No 229
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.68 E-value=1.7e-05 Score=66.69 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=22.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..++|+++|.+|||||||+++|...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999854
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.67 E-value=0.00014 Score=70.94 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
..+.++++|.+|+|||||++.|+|-.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 44569999999999999999999863
No 231
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.58 E-value=6.8e-05 Score=69.91 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=35.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc----ccc-cCCCcccceEEEEEEec-CeeEEEEeCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV----DVQ-PYAFTTKSLFVGHTDYK-YLRYQVIDTPGILD 227 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~----~v~-~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~ 227 (275)
...++++|.+|+|||||+|.|+|-.. .+. ....+|+.... .... ...+.++|+||+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--ccccccCCeeehHhhcccc
Confidence 44799999999999999999998431 111 11112222111 1111 13689999999864
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.53 E-value=3.3e-05 Score=70.74 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=35.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCc--ccccCC-------CcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRADV--DVQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~--~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
.++++|.+|||||||+|.|.|... ..+... .+|.....+.+ . ....++||||+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v--~-q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHF--P-HGGDVIDSPGVREFG 282 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEEC--T-TSCEEEECHHHHTCC
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEE--C-CCCEecCcccHHHhh
Confidence 789999999999999999998653 222221 13433333332 1 233679999986643
No 233
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=9e-05 Score=65.97 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=35.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC-cccccCC-------CcccceEEEEEEecCeeEEEEeCCCCCCCC
Q 035873 170 TILICWYPNVGKSSFMNKITRAD-VDVQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~-~~v~~~~-------~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 229 (275)
.++++|++|+|||||+|.|.|.. +..+... .+|.... ..... ....++||||+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~-~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFD-FGGYVVDTPGFANLE 235 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEECT-TSCEEESSCSSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEcC-CCCEEEECcCCCccC
Confidence 78999999999999999999764 3333222 2343332 12221 234789999976443
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.29 E-value=4.6e-05 Score=63.98 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=37.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCc--ccccCCCcccceEEEEEEecCeeEEEEeCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADV--DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG 224 (275)
...|+++|++|||||||++.|.+... .....+.||+.+..+. .+|..+.++|++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 34789999999999999999987654 2445556777665443 3444555554443
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00018 Score=58.75 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=26.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc--ccccCCCcccceE
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV--DVQPYAFTTKSLF 206 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~--~v~~~~~tT~~~~ 206 (275)
..++++|++|||||||++.|.+... .......||+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 4789999999999999999987542 1223344555443
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.64 E-value=0.0014 Score=54.65 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+|+|.+|+|||||++.|.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.61 E-value=0.0012 Score=53.83 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
...++++|+||+||||+++.|++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 347899999999999999999875
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.60 E-value=0.00093 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.0
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.++++|.+|+|||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.59 E-value=0.00089 Score=55.59 Aligned_cols=22 Identities=23% Similarity=0.467 Sum_probs=20.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..++++|++|+|||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.58 E-value=0.0015 Score=54.61 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcCC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
....|+++|++|||||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998654
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.56 E-value=0.001 Score=56.53 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
...++++|++|||||||++.|.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999998754
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.52 E-value=0.0013 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..++++|++|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 47899999999999999999864
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.47 E-value=0.0014 Score=54.60 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
..++++|++|+|||||++.|+|-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999998753
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.44 E-value=0.0013 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.337 Sum_probs=20.3
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC
Q 035873 170 TILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.++++|++|+|||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998543
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.41 E-value=0.0013 Score=54.55 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=26.1
Q ss_pred eeEeeccCCCCHHHHHHHHhcCCcc--cccCCCcccce
Q 035873 170 TILICWYPNVGKSSFMNKITRADVD--VQPYAFTTKSL 205 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~~~--v~~~~~tT~~~ 205 (275)
-|+++|++|||||||+++|....+. .-..+.||+.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 3889999999999999999755432 23445566554
No 246
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.30 E-value=0.0023 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|+|-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999999874
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.30 E-value=0.0019 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.30 E-value=0.0018 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
...++++|++|+|||||++.|.|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998743
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.18 E-value=0.0025 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999975
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.17 E-value=0.0025 Score=55.32 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998753
No 251
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.15 E-value=0.0026 Score=52.72 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
...|+++|.+|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.14 E-value=0.003 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998753
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.13 E-value=0.0029 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
...|+++|.+|+||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3478999999999999999998654
No 254
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.12 E-value=0.0027 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999998743
No 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.12 E-value=0.0026 Score=53.80 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.11 E-value=0.0033 Score=53.90 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998753
No 257
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.10 E-value=0.0028 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999999974
No 258
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.07 E-value=0.003 Score=54.21 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999753
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.06 E-value=0.003 Score=53.78 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=21.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|+|-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999875
No 260
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.06 E-value=0.0034 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+..|+++|.+|+||||+++.|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.06 E-value=0.0029 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=18.6
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
.-.++++|.+|+|||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3478999999999999999543
No 262
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.06 E-value=0.0035 Score=54.67 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 478999999999999999999753
No 263
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.05 E-value=0.0035 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.-.++++|.+|+|||||++.|+|-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.04 E-value=0.0032 Score=52.01 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|.+|+||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.03 E-value=0.0029 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.3
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.++++|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 266
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.03 E-value=0.0031 Score=54.51 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998753
No 267
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.03 E-value=0.0032 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998753
No 268
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.03 E-value=0.0037 Score=54.28 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999753
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.02 E-value=0.003 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+++|.+|+||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.02 E-value=0.0027 Score=52.54 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=19.4
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.++++|.+|+|||||++.|++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999885
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.01 E-value=0.0035 Score=50.40 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=21.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV 193 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~ 193 (275)
-.++++|.+|+|||||++.|.|.-+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3789999999999999999987543
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.00 E-value=0.0033 Score=54.24 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=21.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999984
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.96 E-value=0.0035 Score=55.17 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999753
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.96 E-value=0.0042 Score=54.22 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=21.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999985
No 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.95 E-value=0.0042 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=21.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999875
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.93 E-value=0.0026 Score=53.45 Aligned_cols=22 Identities=9% Similarity=-0.066 Sum_probs=20.6
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.++++|.+|+|||||++.|+|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999986
No 277
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.93 E-value=0.0036 Score=54.18 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999753
No 278
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.93 E-value=0.0044 Score=54.03 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998753
No 279
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.91 E-value=0.0045 Score=54.15 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=21.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999753
No 280
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.88 E-value=0.0042 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=20.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
...|+++|++||||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 447899999999999999999743
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.84 E-value=0.0047 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 282
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.84 E-value=0.0081 Score=49.16 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=33.3
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.++.|+||||... . ....++... |.++++++++... ..+..-++.+++
T Consensus 76 yD~viiD~~~~~~-------~---~~~~~l~~a-d~viiv~~~~~~~-~~~~~~~~~l~~ 123 (206)
T 4dzz_A 76 YDFAIVDGAGSLS-------V---ITSAAVMVS-DLVIIPVTPSPLD-FSAAGSVVTVLE 123 (206)
T ss_dssp SSEEEEECCSSSS-------H---HHHHHHHHC-SEEEEEECSCTTT-HHHHHHHHHHHT
T ss_pred CCEEEEECCCCCC-------H---HHHHHHHHC-CEEEEEecCCHHH-HHHHHHHHHHHH
Confidence 5789999998652 1 123455554 9999999998776 666666666543
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.82 E-value=0.0046 Score=48.81 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=18.0
Q ss_pred eeEeeccCCCCHHHHHHHH
Q 035873 170 TILICWYPNVGKSSFMNKI 188 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l 188 (275)
.|+++|+||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999998
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.80 E-value=0.0047 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...++++|++|+|||||++.|.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34799999999999999999975
No 285
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.80 E-value=0.0099 Score=49.10 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.9
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+++|.+|+||||+.+.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.79 E-value=0.0053 Score=49.20 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|.+|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.74 E-value=0.0049 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.-.++|+|++|+|||||++.|.|
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34799999999999999999985
No 288
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.74 E-value=0.0049 Score=55.06 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=21.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+|+|.+|+|||||++.|.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 456899999999999999999875
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.72 E-value=0.0054 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|++|+||||+.+.|.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.71 E-value=0.0056 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 291
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.70 E-value=0.0037 Score=52.75 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.1
Q ss_pred CceeEeeccCCCCHHHHHHHHh-cC
Q 035873 168 TRTILICWYPNVGKSSFMNKIT-RA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~-~~ 191 (275)
...++++|++|+|||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3478999999999999999998 64
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.70 E-value=0.0056 Score=48.53 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=19.1
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.68 E-value=0.0054 Score=53.48 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998753
No 294
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.62 E-value=0.0068 Score=53.63 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3478999999999999999998753
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.59 E-value=0.0072 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.7
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+..|+++|.||+||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.59 E-value=0.0058 Score=49.93 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=20.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+.++++|++|+|||||+++|.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 35789999999999999999874
No 297
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.58 E-value=0.0065 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=21.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+++|.+|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.55 E-value=0.0072 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+++|++|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.55 E-value=0.0063 Score=50.77 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+++|.+|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 300
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.54 E-value=0.0072 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.54 E-value=0.0059 Score=50.79 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=20.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.-.++++|.+|+|||||++.|++
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999986
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.53 E-value=0.0061 Score=50.09 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=19.6
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 303
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.46 E-value=0.0082 Score=54.89 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|.|-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 47899999999999999999874
No 304
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.43 E-value=0.021 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=21.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
..+..|+++|.+|+|||||++.|.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356689999999999999998885
No 305
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.41 E-value=0.0077 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.1
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
-.++++|++|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 478999999999999999887
No 306
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.40 E-value=0.011 Score=52.21 Aligned_cols=24 Identities=21% Similarity=-0.013 Sum_probs=20.8
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
..+..|+|+|.+|+|||||.+.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356689999999999999998875
No 307
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.39 E-value=0.0058 Score=54.54 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.-.++++|.+|+|||||++.|.|-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 347899999999999999999874
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.38 E-value=0.0081 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=18.9
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 309
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.38 E-value=0.011 Score=48.52 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+..|++.|.+|+||||+.+.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 34579999999999999999886
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.38 E-value=0.0091 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|++|+||||+...|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998873
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.37 E-value=0.0075 Score=48.65 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...++++|.||+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.37 E-value=0.0098 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
....|+++|.+|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999875
No 313
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.34 E-value=0.011 Score=50.83 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=20.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
....|+++|++|+||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999998
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.33 E-value=0.0093 Score=48.07 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|++.|.|||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 315
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.25 E-value=0.0092 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=21.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+++|.+|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.25 E-value=0.0097 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.1
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999874
No 317
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.22 E-value=0.0044 Score=50.51 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..++++|.+|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.19 E-value=0.0098 Score=47.95 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=19.2
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..|+++|.||+||||+.+.|.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
No 319
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.19 E-value=0.011 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=19.6
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...|+++|++|+||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999886
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.19 E-value=0.0086 Score=53.85 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=20.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.++++|.+|+|||||++.|.|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 321
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.18 E-value=0.0098 Score=54.15 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999753
No 322
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.17 E-value=0.011 Score=53.81 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|+|-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 36899999999999999999974
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.16 E-value=0.013 Score=47.69 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
....|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988754
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.13 E-value=0.012 Score=53.64 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=20.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|+|-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 36899999999999999999975
No 325
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.13 E-value=0.012 Score=53.79 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=39.7
Q ss_pred ccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC--------CCCHHHHHHHHh
Q 035873 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC--------GYSIAQQAALFH 273 (275)
Q Consensus 202 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~--------g~~~~~q~~l~~ 273 (275)
|.+.....+.+++..+++|||+|.-.. .......++. ++++|||+|.|+.. ..++.+...+|+
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~--------r~~w~~~f~~-~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~ 258 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSE--------RKRWFECFDS-VTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE 258 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC---------------CTTSCTT-CCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhh--------hhhHHHHhCC-CCEEEEEEECccccccccccccccHHHHHHHHHH
Confidence 556666777788889999999996321 1111233344 38999999999732 234666666665
Q ss_pred c
Q 035873 274 S 274 (275)
Q Consensus 274 e 274 (275)
+
T Consensus 259 ~ 259 (362)
T 1zcb_A 259 T 259 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 326
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.12 E-value=0.0094 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.9
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC
Q 035873 170 TILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.++++|.+|+|||||++.|.+.-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 79999999999999999998753
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.12 E-value=0.013 Score=47.48 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...|+++|.||+||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999886
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.12 E-value=0.012 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|++.|.||+||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 329
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.08 E-value=0.023 Score=51.45 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=41.2
Q ss_pred ccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCC-------C-CCCCHHHHHHHHh
Q 035873 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISG-------S-CGYSIAQQAALFH 273 (275)
Q Consensus 202 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~-------~-~g~~~~~q~~l~~ 273 (275)
|.+.....+.+++..+++|||+|. ......+...++.+ +++|||+|.|+ . ...++.+-..+|+
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQ--------e~~R~~w~~yy~~a-~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~ 218 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQ--------RSERKXWVSFFSDV-DCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFK 218 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSC--------HHHHHHHHTTSCSC-SEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCc--------ccccccHHHHhccC-CEEEEEEECCccccccccccccchHHHHHHHHH
Confidence 556667777788889999999993 22233333444444 89999999983 1 1234555555554
Q ss_pred c
Q 035873 274 S 274 (275)
Q Consensus 274 e 274 (275)
+
T Consensus 219 ~ 219 (340)
T 4fid_A 219 D 219 (340)
T ss_dssp H
T ss_pred H
Confidence 3
No 330
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.07 E-value=0.013 Score=53.53 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 368999999999999999999753
No 331
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.07 E-value=0.0096 Score=54.20 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.6
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.++++|.+|+|||||++.|.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999874
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.05 E-value=0.013 Score=47.36 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.3
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+..|+++|.||+||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999998885
No 333
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.04 E-value=0.011 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...++++|.+|+|||||++.|.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999975
No 334
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.03 E-value=0.013 Score=53.79 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 368999999999999999999753
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.03 E-value=0.013 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+..|+++|.||+||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 336
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.01 E-value=0.014 Score=47.55 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=22.3
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhcC
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..+..|+++|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999998754
No 337
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.01 E-value=0.012 Score=54.00 Aligned_cols=24 Identities=13% Similarity=0.222 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 368999999999999999999753
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.00 E-value=0.026 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+..|+++|+||+||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999963
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.99 E-value=0.015 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.0
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+..|++.|.+|+||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 340
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.98 E-value=0.098 Score=45.35 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+++.|.||+||||+..++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 341
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.96 E-value=0.009 Score=53.30 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.+.++++|+.|+|||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457899999999999999999865
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.96 E-value=0.018 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
....|++.|.+|+||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999998886
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.95 E-value=0.0088 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..+++++|.+|+|||||++.|+|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 344
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.94 E-value=0.014 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 345
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.94 E-value=0.015 Score=53.34 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999999753
No 346
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.92 E-value=0.018 Score=46.59 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+++|.+|+||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.91 E-value=0.015 Score=47.44 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=20.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
...|++.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 348
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.91 E-value=0.016 Score=45.88 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCCcc-------cccCCCcccceEEEEEEecCeeEEEEeCCCCCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRADVD-------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILD 227 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~~~-------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~ 227 (275)
...++++|.+|+|||||++.+.+.-.. +......... .....++.++|=|+.++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD------AAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG------GGGGCSEEEEESTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH------HHhCCCEEEEeCccccC
Confidence 347899999999999999999753211 1111111100 02245789999999764
No 349
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.91 E-value=0.015 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.8
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999987
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.90 E-value=0.014 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...|+++|.||+||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 351
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.90 E-value=0.016 Score=55.68 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.-.++++|.+|+|||||++.|+|.
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347899999999999999999985
No 352
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.90 E-value=0.19 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
..-|++.|+||+|||+|..++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35689999999999999999975
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.90 E-value=0.017 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+..|+++|.||+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 354
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.85 E-value=0.065 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..+++.|.||+|||++..++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999974
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.83 E-value=0.013 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
....|++.|.+|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4458999999999999999999864
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.83 E-value=0.016 Score=48.24 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.6
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...|+++|.||+||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 357
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=94.81 E-value=0.0089 Score=54.35 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=42.4
Q ss_pred cccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCC--------CCCHHHHHHHH
Q 035873 201 TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSC--------GYSIAQQAALF 272 (275)
Q Consensus 201 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~--------g~~~~~q~~l~ 272 (275)
.|.+.....+.+++..+++|||+|.-. .+ ..+...++.+ +++|||+|.|+.. ...+.+-..+|
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~----~r----~~w~~yf~~a-~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~ 249 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRS----ER----KKWIHCFEGV-TAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGG----GG----GGGGGGCTTC-SEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchh----hh----HHHHHHHhcC-CEEEEEEECccccccccccchhhhHHHHHHHH
Confidence 356666777788888999999999532 11 1122334444 9999999999642 13466666666
Q ss_pred hc
Q 035873 273 HS 274 (275)
Q Consensus 273 ~e 274 (275)
++
T Consensus 250 ~~ 251 (353)
T 1cip_A 250 DS 251 (353)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 358
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.80 E-value=0.016 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|++.|.||+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988863
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.79 E-value=0.017 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+.++++|++|+|||||+++|.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.78 E-value=0.015 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.048 Sum_probs=19.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+++|.+|+|||||+.+|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999863
No 361
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.75 E-value=0.013 Score=51.20 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.5
Q ss_pred eEeeccCCCCHHHHHHHHhcC
Q 035873 171 ILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~ 191 (275)
++++|+||+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999863
No 362
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.73 E-value=0.014 Score=55.74 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=20.2
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.++++|.+|+|||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 363
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.73 E-value=0.012 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|+|-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 36899999999999999999975
No 364
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.72 E-value=0.038 Score=43.77 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+++.|.+|+|||+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 365
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.68 E-value=0.015 Score=55.76 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999853
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.66 E-value=0.017 Score=46.38 Aligned_cols=23 Identities=13% Similarity=0.188 Sum_probs=20.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999875
No 367
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.65 E-value=0.024 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+..|+++|.||+||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.65 E-value=0.017 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.7
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
+.|+++|.||+||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 369999999999999988885
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.63 E-value=0.013 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=15.7
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+..|++.|.||+||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999986
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.61 E-value=0.019 Score=46.19 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.1
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..|++.|.||+||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998886
No 371
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.60 E-value=0.015 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=20.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..++++|.+|+|||||++.|.+
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999975
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.60 E-value=0.018 Score=47.66 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.4
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
.|++.|.||+||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 373
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.60 E-value=0.018 Score=46.18 Aligned_cols=20 Identities=20% Similarity=0.374 Sum_probs=18.4
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
.|+++|.||+||||+...|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999998886
No 374
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.56 E-value=0.011 Score=53.87 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|++|+|||||++.|+|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999753
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.56 E-value=0.0088 Score=49.32 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|+++|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 376
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.54 E-value=0.021 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|+|-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 47899999999999999999874
No 377
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.50 E-value=0.016 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.3
Q ss_pred eEeeccCCCCHHHHHHHHhcC
Q 035873 171 ILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~ 191 (275)
++++|.||+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999853
No 378
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.47 E-value=0.021 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.9
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.46 E-value=0.02 Score=47.40 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.4
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
.|++.|.||+||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 380
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.42 E-value=0.032 Score=50.21 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=40.7
Q ss_pred ccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCC-------CCCCC-CHHHHHHHHh
Q 035873 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDIS-------GSCGY-SIAQQAALFH 273 (275)
Q Consensus 202 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s-------~~~g~-~~~~q~~l~~ 273 (275)
|.+.....+.+++..+++|||+|.. .....+...++. ++++|||+|.| +.... .+.+-..+|+
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe--------~~R~~w~~yf~~-~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~ 224 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQR--------SERRKWIHCFEN-VTSIMFLVALSEYDQVLVESDNENRMEESKALFR 224 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSH--------HHHTTGGGGCSS-CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCch--------hHHHHHHHHhCC-CCEEEEEEECccccccccccccHhHHHHHHHHHH
Confidence 4456667777888899999999942 222222333444 38999999887 43333 4555555655
Q ss_pred c
Q 035873 274 S 274 (275)
Q Consensus 274 e 274 (275)
+
T Consensus 225 ~ 225 (327)
T 3ohm_A 225 T 225 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.41 E-value=0.022 Score=45.20 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=18.9
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.40 E-value=0.022 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.9
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 383
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.33 E-value=0.02 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.0
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..++++|.||+|||||++.|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 368899999999999999887
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.32 E-value=0.022 Score=46.17 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=18.9
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.30 E-value=0.026 Score=46.81 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.28 E-value=0.024 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|.+|+||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998864
No 387
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.02 Score=53.85 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
...++++|.+|+|||||++.|+|-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 347999999999999999999854
No 388
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.024 Score=55.18 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4478999999999999999999753
No 389
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.26 E-value=0.02 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-+++++|.+|+|||||++.|+|.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.25 E-value=0.027 Score=48.07 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+..|++.|.||+||||+...|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35589999999999999999886
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.25 E-value=0.024 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.384 Sum_probs=19.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
-.++++|.||+|||||++.|++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 392
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.24 E-value=0.024 Score=47.00 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=18.4
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
.|++.|.||+||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 393
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.22 E-value=0.025 Score=44.67 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.1
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
....+++|.+|+||||++.+|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4467899999999999999875
No 394
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.21 E-value=0.022 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.4
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
....+++|++|+|||||+++|+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999987
No 395
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.20 E-value=0.031 Score=51.71 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=40.6
Q ss_pred ccceEEEEEEecCeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCC--------CCCCHHHHHHHHh
Q 035873 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGS--------CGYSIAQQAALFH 273 (275)
Q Consensus 202 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~--------~g~~~~~q~~l~~ 273 (275)
|.+.....+.+++..+++|||+|.-.. ...+...++.+ +++|||+|.|+. ...++++-..+|+
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~--------r~~w~~yf~~a-~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~ 274 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDE--------RRKWIQCFNDV-TAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 274 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGG--------GGGGGGGTTTC-CEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHH
T ss_pred eeeeEEEEeecCCccceecccchhhhh--------hhhhHhhccCC-CEEEEEEECcccccccccccccchHHHHHHHHH
Confidence 445555667778889999999996321 11223344444 999999999961 1345666566665
Q ss_pred c
Q 035873 274 S 274 (275)
Q Consensus 274 e 274 (275)
+
T Consensus 275 ~ 275 (402)
T 1azs_C 275 S 275 (402)
T ss_dssp H
T ss_pred H
Confidence 4
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.17 E-value=0.033 Score=48.69 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
..+..|++.|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456689999999999999999886
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.12 E-value=0.023 Score=47.43 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.1
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..|+++|.||+||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
No 398
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.10 E-value=0.028 Score=54.79 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=21.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhcCC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.-.++++|.+|+|||||++.|+|-.
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3478999999999999999999753
No 399
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.09 E-value=0.17 Score=45.21 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
+.+++.|.+|+||||+++.+.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.07 E-value=0.032 Score=47.01 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.2
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
....|+++|.||+||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999886
No 401
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.11 Score=48.48 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+.-|++.|+||+|||+|..++++
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999974
No 402
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.06 E-value=0.028 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|.|-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 36899999999999999999875
No 403
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.01 E-value=0.023 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.3
Q ss_pred eEeeccCCCCHHHHHHHHhcC
Q 035873 171 ILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~~~ 191 (275)
++++|.||+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999853
No 404
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.00 E-value=0.15 Score=43.04 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+..+++.|.||+|||++..++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 405
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.99 E-value=0.028 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.2
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..++++|+||+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999854
No 406
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.99 E-value=0.024 Score=53.71 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
-.++++|.+|+|||||++.|+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999974
No 407
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.94 E-value=0.027 Score=48.59 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=19.3
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|+++|++|+||||+.+.|.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 408
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.93 E-value=0.03 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|.|-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 409
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.93 E-value=0.03 Score=46.94 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=18.8
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 410
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.92 E-value=0.03 Score=48.17 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=18.9
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|+++|+||+|||||...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999863
No 411
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.92 E-value=0.033 Score=45.86 Aligned_cols=22 Identities=9% Similarity=-0.084 Sum_probs=19.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..++++|.||+|||||+..|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 412
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.89 E-value=0.032 Score=44.21 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.0
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..|++.|.+|+||||+...|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998886
No 413
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.87 E-value=0.029 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999853
No 414
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.029 Score=53.87 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.3
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999753
No 415
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.77 E-value=0.027 Score=54.57 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|.|-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999999875
No 416
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.74 E-value=0.25 Score=43.40 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=33.9
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHhc
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~e 274 (275)
.++.|+|||+..... . ...+...+|.+++|+.+....-..+..-++.+++
T Consensus 214 yD~VIIDtpp~~~~~----d------~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~ 263 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS----D------AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQ 263 (299)
T ss_dssp CSEEEEECCCTTTCT----H------HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHH
T ss_pred CCEEEEcCCCCchhH----H------HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHh
Confidence 368999999976421 1 1234455699999999887666666666666553
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.72 E-value=0.034 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...++++|+||+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999875
No 418
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.71 E-value=0.057 Score=42.67 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+++.|.+|+|||+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988864
No 419
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.70 E-value=0.032 Score=54.37 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCC
Q 035873 169 RTILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~ 192 (275)
-.++++|.+|+|||||++.|+|-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999853
No 420
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.13 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.4
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+.-|++.|+||+|||+|..++++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999975
No 421
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.61 E-value=0.065 Score=45.09 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=24.3
Q ss_pred HHHHHHHHhccCCCCCCCCceeEeeccCCCCHHHHHHHHh
Q 035873 150 YLEQIRQHMARLPSIDPNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 150 ~l~~~~~~l~~~~~~~~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
++..+...+...|. ...+++.|+||+||||+..+|.
T Consensus 44 f~~~l~~~~~~iPk----kn~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 44 FLGALKSFLKGTPK----KNCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp HHHHHHHHHHTCTT----CSEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCc----ccEEEEECCCCCCHHHHHHHHH
Confidence 34444444444332 2369999999999998877775
No 422
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.59 E-value=0.032 Score=54.15 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|.|-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999874
No 423
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.58 E-value=0.043 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+..|.++|+|||||||....|+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44577889999999999988886
No 424
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.13 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
.-|++.|+||+|||+|..++++
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999974
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.55 E-value=0.044 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.157 Sum_probs=20.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|++.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.54 E-value=0.034 Score=46.50 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=20.0
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..++++|.||+|||||+..|++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999999886
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.51 E-value=0.039 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 428
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.47 E-value=0.027 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|++|+|||||++.|.|-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 47799999999999999999864
No 429
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.39 E-value=0.035 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
.-.++++|.+|+|||||++.|+|.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999999875
No 430
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.38 E-value=0.046 Score=46.64 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=20.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+..|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 431
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.33 E-value=0.063 Score=47.73 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=19.1
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.+++.|++|+||||+++.|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998876
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.30 E-value=0.048 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+++|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999998874
No 433
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.041 Score=53.61 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.7
Q ss_pred eeEeeccCCCCHHHHHHHHhcCC
Q 035873 170 TILICWYPNVGKSSFMNKITRAD 192 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~~ 192 (275)
.++++|.+|+|||||++.|+|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999754
No 434
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.19 E-value=0.037 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|.|-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 435
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.17 E-value=0.056 Score=44.74 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=19.9
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+++.|.||+||||+...+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998863
No 436
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.16 E-value=0.23 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+++.|.||+|||++..++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.07 E-value=0.054 Score=46.30 Aligned_cols=22 Identities=18% Similarity=0.156 Sum_probs=20.0
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+..|++.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999887
No 438
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.06 E-value=0.053 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.2
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
-+++.|.||+||||+..++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.05 E-value=0.05 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+...+|+|.+|+||||++.+|.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 34577999999999999999875
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.04 E-value=0.064 Score=49.60 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+..|+++|.||+||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.02 E-value=0.053 Score=45.31 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=18.1
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
.|+++|+|||||+|....|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999988886
No 442
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.01 E-value=0.22 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....+++.|.||+|||++..++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.00 E-value=0.054 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=20.8
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|++.|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 444
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.94 E-value=0.013 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.8
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.++|+|++|+|||||+++|++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468899999999999999975
No 445
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.90 E-value=0.61 Score=40.71 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=31.6
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.++.|+|||+.+... + ...+...+|.+|+|+++....-..+..-++.++
T Consensus 202 yD~VIIDtpp~~~~~--d--------a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~ 250 (286)
T 3la6_A 202 YDLVLIDTPPILAVT--D--------AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFE 250 (286)
T ss_dssp CSEEEEECCCTTTCT--H--------HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcchH--H--------HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHH
Confidence 368999999976422 0 123444569999999987654445555555554
No 446
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.80 E-value=0.058 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+++|.||+||||+.++|..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 447
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.80 E-value=0.19 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.8
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..++++|++|+||||+++.+.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHH
Confidence 467999999999999999875
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.76 E-value=0.065 Score=43.67 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.2
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 449
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.59 E-value=0.071 Score=43.46 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..+++.|.||+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988863
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.58 E-value=0.055 Score=46.83 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=19.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...++++|.||+|||||+..+.+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999988763
No 451
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.27 Score=45.77 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+.-|++.|+||+|||+|..++++
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHH
Confidence 34699999999999999999975
No 452
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.50 E-value=0.038 Score=56.60 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|+|-
T Consensus 700 eivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999975
No 453
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.45 E-value=0.061 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=21.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhcCCc
Q 035873 169 RTILICWYPNVGKSSFMNKITRADV 193 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~~~ 193 (275)
-.++++|.+|+|||||++.|+|..+
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3679999999999999999996543
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.43 E-value=0.075 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.1
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+..|++.|.+|+||||+.+.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 455
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.40 E-value=0.71 Score=47.13 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=18.3
Q ss_pred ceeEeeccCCCCHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKI 188 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l 188 (275)
..++++|++|+||||+++.+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999988
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.31 E-value=0.067 Score=47.91 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.7
Q ss_pred CCceeEeeccCCCCHHHHHHHHh
Q 035873 167 NTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+...+++|.+|+||||++.++.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44567899999999999999974
No 457
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.20 E-value=0.082 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.+..+|+++|.+++||||++..+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 346799999999999999998873
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.12 E-value=0.046 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...|+++|.+|+|||||.+.|.+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 45789999999999999999875
No 459
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.11 E-value=0.045 Score=45.44 Aligned_cols=48 Identities=10% Similarity=-0.094 Sum_probs=28.3
Q ss_pred CeeEEEEeCCCC-CCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHH
Q 035873 214 YLRYQVIDTPGI-LDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALF 272 (275)
Q Consensus 214 ~~~~~liDTpG~-~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~ 272 (275)
..++.++||||. .. . ....++... |.++++++++...-..+..-++.+
T Consensus 67 ~yD~viiD~p~~~~~-~---------~~~~~l~~a-D~viiv~~~~~~~~~~~~~~~~~l 115 (209)
T 3cwq_A 67 KYQNIVIDTQARPED-E---------DLEALADGC-DLLVIPSTPDALALDALMLTIETL 115 (209)
T ss_dssp GCSEEEEEEECCCSS-S---------HHHHHHHTS-SEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCcCc-H---------HHHHHHHHC-CEEEEEecCCchhHHHHHHHHHHH
Confidence 458999999996 32 1 123344444 999999988743323333333333
No 460
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.10 E-value=0.11 Score=46.12 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
...+++.|.+|+|||||++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999875
No 461
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.03 E-value=0.21 Score=46.41 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..-|++.|+||+|||+|..++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999753
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.98 E-value=0.058 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
....|++.|.+|+||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988743
No 463
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.94 E-value=0.1 Score=42.21 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.7
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.+++.|.+|+|||++...+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988864
No 464
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.86 E-value=0.095 Score=42.87 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.8
Q ss_pred eeEeeccCCCCHHHHHHHHhc
Q 035873 170 TILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~ 190 (275)
.+++.|.+|+||||++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 465
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.35 Score=44.66 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
.-|++.|+||+|||+|..++++
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 466
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.64 E-value=1.5 Score=37.69 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=30.4
Q ss_pred eeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCCCCCCCCHHHHHHHHh
Q 035873 215 LRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFH 273 (275)
Q Consensus 215 ~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s~~~g~~~~~q~~l~~ 273 (275)
.++.|+|||+..... + ...+...+|.+++|+.+....-..+..-++.++
T Consensus 192 yD~VIIDtpp~~~~~--d--------~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~ 240 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT--D--------AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIE 240 (271)
T ss_dssp CSEEEEECCCTTTCS--H--------HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCchHH--H--------HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHH
Confidence 468999999976421 1 122333349999999987554444555555554
No 467
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=91.62 E-value=0.028 Score=51.48 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=18.5
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
.++++|.+|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999998874
No 468
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.54 E-value=0.11 Score=45.41 Aligned_cols=23 Identities=22% Similarity=-0.011 Sum_probs=19.2
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+.-+++.|+||+|||+|..++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577779999999999999874
No 469
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.50 E-value=0.11 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.6
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.....|+++|.||+||||+-.+|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999998885
No 470
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.49 E-value=0.083 Score=41.03 Aligned_cols=23 Identities=9% Similarity=0.119 Sum_probs=19.9
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..|++.|.||+|||++...+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998743
No 471
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.41 E-value=0.1 Score=43.52 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.7
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
..++++|.||+|||||...+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999976664
No 472
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.41 E-value=0.11 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..+++.|+||+|||++..++.+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999975
No 473
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.40 E-value=0.15 Score=42.72 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=19.3
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...|++.|.+|+||||+++.|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999999999885
No 474
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.34 E-value=0.078 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.7
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
+...+++|.+|+|||||+.+|.
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 3378999999999999999997
No 475
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.27 E-value=0.068 Score=46.98 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=17.5
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988863
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.26 E-value=0.12 Score=46.23 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+++|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998874
No 477
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.24 E-value=0.43 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+.-|++.|+||+|||+|..++++
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHh
Confidence 34689999999999999999974
No 478
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.17 E-value=0.14 Score=46.21 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.6
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
..|+|+|++|+|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 479
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.15 E-value=0.11 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....+++|++|+|||||+.++.+
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999874
No 480
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.15 E-value=0.076 Score=56.24 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCceeEeeccCCCCHHHHHHHHhc
Q 035873 166 PNTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
+..-+|++||.+|+|||||++.|.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
No 481
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.01 E-value=0.14 Score=42.91 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.3
Q ss_pred CCceeEeeccCCCCHHHHHHHHhcC
Q 035873 167 NTRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
....|+++|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4557899999999999999999744
No 482
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.99 E-value=0.1 Score=47.12 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=20.7
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
...+.++|.||+|||||+..|++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999998753
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.97 E-value=0.13 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|++.|.+|+||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988864
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.87 E-value=0.11 Score=49.54 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.0
Q ss_pred ceeEeeccCCCCHHHHHHHH
Q 035873 169 RTILICWYPNVGKSSFMNKI 188 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l 188 (275)
-.++++|.+|+|||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 47899999999999999983
No 485
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.82 E-value=0.19 Score=44.62 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred CCceeEeeccCCCCHHHHHHHHhc
Q 035873 167 NTRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 167 ~~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....+++.|+||+||||+++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 486
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.79 E-value=0.15 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.0
Q ss_pred CceeEeeccCCCCHHHHHHHHh
Q 035873 168 TRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~ 189 (275)
...+++.|.||+|||++..++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999998765
No 487
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.72 E-value=0.16 Score=42.99 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred CCCceeEeeccCCCCHHHHHHHHh
Q 035873 166 PNTRTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 166 ~~~~~i~ivG~~nvGKStlin~l~ 189 (275)
.....|++.|.+|+||||+++.|.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999886
No 488
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.71 E-value=0.12 Score=45.50 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.4
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..+++.|.||+|||||+..+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998874
No 489
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.69 E-value=0.13 Score=45.66 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.3
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.+++.|+||+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998753
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.68 E-value=0.16 Score=42.28 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.5
Q ss_pred eeEeeccCCCCHHHHHHHHh
Q 035873 170 TILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~ 189 (275)
-|++-|..||||||+++.|.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47888999999999988776
No 491
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.67 E-value=0.12 Score=54.58 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhcC
Q 035873 169 RTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~~ 191 (275)
-.++++|.+|+|||||++.|.|-
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 492
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.63 E-value=0.13 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.7
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999998874
No 493
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=90.57 E-value=0.08 Score=48.04 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=35.4
Q ss_pred ccceEEEEEEec------CeeEEEEeCCCCCCCCCCchhHHHHHHHHHHHhccceeEEEEeCC-------CC-CCCCHHH
Q 035873 202 TKSLFVGHTDYK------YLRYQVIDTPGILDRPFEDHNIIEMCSITALAHLRSAVLFFLDIS-------GS-CGYSIAQ 267 (275)
Q Consensus 202 T~~~~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~viD~s-------~~-~g~~~~~ 267 (275)
|.+.....+.++ ...+++|||+|...- +. .+...++.. +++|||+|.| +. ...++++
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~----r~----~~~~y~~~~-~~iI~v~dis~ydq~l~e~~~~~s~~~ 234 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNE----RR----KWIHLFEGV-TAVIFCAAISEYDQTLFEDEQKNRMME 234 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTG----GG----GTGGGCTTE-EEEEEEEEGGGTTCBCSSCTTSBHHHH
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhh----hH----HHHHHhCCC-CEEEEEEECcccccccccccchhHHHH
Confidence 344444444443 357899999996421 11 112334444 8999999998 22 2234555
Q ss_pred HHHHHhc
Q 035873 268 QAALFHS 274 (275)
Q Consensus 268 q~~l~~e 274 (275)
-..+|++
T Consensus 235 ~~~~~~~ 241 (354)
T 2xtz_A 235 TKELFDW 241 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 494
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.54 E-value=0.15 Score=46.39 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.8
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
.+.|+++|++|+||||+...|++
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999987764
No 495
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=90.51 E-value=0.12 Score=46.95 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.0
Q ss_pred CceeEeeccCCCCHHHHHHHHhc
Q 035873 168 TRTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~ 190 (275)
....+++|.+|+||||++.++.+
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 34789999999999999999873
No 496
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.50 E-value=0.17 Score=45.13 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=20.6
Q ss_pred CceeEeeccCCCCHHHHHHHHhcC
Q 035873 168 TRTILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 168 ~~~i~ivG~~nvGKStlin~l~~~ 191 (275)
+..|+++|++|||||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457899999999999999999743
No 497
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.44 E-value=0.22 Score=38.53 Aligned_cols=22 Identities=0% Similarity=-0.028 Sum_probs=19.5
Q ss_pred eeEeeccCCCCHHHHHHHHhcC
Q 035873 170 TILICWYPNVGKSSFMNKITRA 191 (275)
Q Consensus 170 ~i~ivG~~nvGKStlin~l~~~ 191 (275)
.|++.|.||+|||++...+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999988754
No 498
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.43 E-value=0.18 Score=41.59 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=17.0
Q ss_pred eEeeccCCCCHHHHHHHHh
Q 035873 171 ILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 171 i~ivG~~nvGKStlin~l~ 189 (275)
|++-|..||||||.++.|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~ 21 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999998875
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.43 E-value=0.085 Score=51.75 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.0
Q ss_pred ceeEeeccCCCCHHHHHHHHh
Q 035873 169 RTILICWYPNVGKSSFMNKIT 189 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~ 189 (275)
-.++++|++|+|||||++.+.
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 467999999999999998653
No 500
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.42 E-value=0.24 Score=43.40 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.5
Q ss_pred ceeEeeccCCCCHHHHHHHHhc
Q 035873 169 RTILICWYPNVGKSSFMNKITR 190 (275)
Q Consensus 169 ~~i~ivG~~nvGKStlin~l~~ 190 (275)
..++|.|.+|+|||||++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
Done!