BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035876
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SW07|GDU2_ARATH Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana GN=GDU2 PE=2
SV=1
Length = 129
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Query: 24 WNSPLPYLFGGLGLMMGLITVALMILACSYRKSSSNSATD-HADEDKSAGHDKQVEMQTE 82
W+SP+PYLFGGL M+ LI VAL+ILACSY + S ++ D A +D +D TE
Sbjct: 28 WHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDDAKPDNDTNKTKHTE 87
Query: 83 MEPKIVVIMAGDDNPSYLAKPV-----SCTFYHQQTEQ 115
M K +VIMAGD P+YLA P SCT E+
Sbjct: 88 MPEKFLVIMAGDVRPTYLATPATRSEQSCTCGDHNEEE 125
>sp|O81775|GDU1_ARATH Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana GN=GDU1 PE=1
SV=1
Length = 158
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Query: 24 WNSPLPYLFGGLGLMMGLITVALMILACSYRKSSSNSATD--HADEDK-SAGHDKQVEMQ 80
W+SP+PYLFGGL M+GLI AL+ILACSY + SS+ D + DE+K S DK
Sbjct: 30 WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSGDKAA--N 87
Query: 81 TEMEPKIVVIMAGDDNPSYLAKPV--SCT 107
E K +VIMAG+D P YLA P CT
Sbjct: 88 GAYEEKFLVIMAGEDLPRYLATPAMKKCT 116
>sp|Q8S8A0|GDU4_ARATH Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2
SV=1
Length = 156
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 24 WNSPLPYLFGGLGLMMGLITVALMILACSYRK--SSSNSATDHADEDKSAGHDKQVEMQT 81
W+SP+PYLFGGL M+GLI AL+ILACSY + +S + + + DE+K + +
Sbjct: 33 WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSGVKA-ASA 91
Query: 82 EMEPKIVVIMAGDDNPSYLAKPVS--CTFYHQ 111
E K++VIMAGDD P +LA P + C H+
Sbjct: 92 ACEEKVLVIMAGDDLPRFLATPAANKCMCGHE 123
>sp|Q9FHH5|GDU3_ARATH Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2
SV=1
Length = 148
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 18 GGGLGHWNSPLPYLFGGLGLMMGLITVALMILACSYRKSS------SNSATDHADEDKSA 71
GG W+SP+PYLFGGL M+GLI AL+ILACSY + S N + + E
Sbjct: 22 GGPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDV 81
Query: 72 GHDKQVEMQTEMEPKIVVIMAGDDNPSYLAKPV--SCT 107
DK + K +VIMAG+ P+YLA P +CT
Sbjct: 82 KPDKTAVKPVALPEKFLVIMAGNVKPTYLATPSVKTCT 119
>sp|Q3E965|GDU5_ARATH Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana GN=GDU5 PE=2
SV=2
Length = 131
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 5/82 (6%)
Query: 24 WNSPLPYLFGGLGLMMGLITVALMILACSYRKSSSNSATDHADEDKSAGHDKQVEMQTEM 83
W +P+PYLFGGL M+GLI AL++LACSY + S + DE+K ++V +
Sbjct: 28 WRTPVPYLFGGLAAMLGLIAFALLLLACSYWRLSRQT----EDEEKQTESGEKV-VAKAF 82
Query: 84 EPKIVVIMAGDDNPSYLAKPVS 105
E KI+VIMAG +NP++LA PV+
Sbjct: 83 EEKILVIMAGQNNPTFLATPVA 104
>sp|Q3E8L0|GDU7_ARATH Protein GLUTAMINE DUMPER 7 OS=Arabidopsis thaliana GN=GDU7 PE=2
SV=1
Length = 97
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 12 RDGGVS-GGGLGHWNSPLPYLFGGLGLMMGLITVALMILA-CSYRKSSSNSATDHADEDK 69
RD V L + +SP+ G+M+GL ++L +A Y K +SNS E+K
Sbjct: 5 RDSMVPVNSRLENMDSPILSKICAWGVMLGLFALSLFAMAYACYHKQTSNSCI----EEK 60
Query: 70 SAGHDKQVEMQTEMEPKIVVIMAGDDNPSYLAKP 103
KQV +MEPKIVVIMAG++NP++ AKP
Sbjct: 61 QG--KKQVLKPLDMEPKIVVIMAGNENPTFFAKP 92
>sp|Q3EAV6|GDU6_ARATH Protein GLUTAMINE DUMPER 6 OS=Arabidopsis thaliana GN=GDU6 PE=2
SV=1
Length = 111
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 24 WNSPLPYLFGGLGLMMGLITVALMILACSYRKSSSNSATDHADEDKSAGHDKQVEMQTEM 83
W SP+PYLFGGL L++ LI +AL+ L C+++K SS+S +H DE+ G + E
Sbjct: 10 WKSPVPYLFGGLFLLVLLIALALLSLVCTHQKPSSSSNNNHMDEEDDVGDKDAKPITREY 69
Query: 84 EPKIVVIMAGDDNPSYLA 101
PKIVVI+AGD+ P+ LA
Sbjct: 70 LPKIVVILAGDNKPTCLA 87
>sp|P45268|Y1604_HAEIN Putative phosphate permease HI_1604 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1604
PE=3 SV=1
Length = 420
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 13 DGG--VSGGGLGHWNSPLPYLFGGLGLMMGLITVALMILA 50
+GG VSGG L W PL G LG+ +GLIT+ ++A
Sbjct: 293 EGGKIVSGGALTWWILPL----GALGIAVGLITMGQKVMA 328
>sp|Q5SW75|SSH2_MOUSE Protein phosphatase Slingshot homolog 2 OS=Mus musculus GN=Ssh2
PE=1 SV=2
Length = 1423
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 36 GLMMGLITVALMILACSYRKSSSNSATDHADEDKSAGHDKQVEMQTEMEPKIVV 89
G + +I VA +A ++SSS S T HA E+ S D+ + + P I++
Sbjct: 686 GCRLSVIEVAASEMAADDQRSSSLSNTPHASEESSVDEDQSKAITELVSPDIIM 739
>sp|B1J2K7|CVRA_PSEPW Cell volume regulation protein A homolog OS=Pseudomonas putida
(strain W619) GN=cvrA PE=3 SV=1
Length = 580
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 14 GGVSGGGLGHWNSPLPYLFGGLGLMMGLITVALMILACSYR 54
GV GGG+ N P YL G L L + L+ L S+R
Sbjct: 45 AGVDGGGIIFNNYPTAYLVGNLALAVILLDGGLRTRVASFR 85
>sp|B0KN20|CVRA_PSEPG Cell volume regulation protein A homolog OS=Pseudomonas putida
(strain GB-1) GN=cvrA PE=3 SV=1
Length = 580
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 14 GGVSGGGLGHWNSPLPYLFGGLGLMMGLITVALMILACSYR 54
GV GGG+ N P YL G L L + L+ L S+R
Sbjct: 45 AGVDGGGIIFNNYPTAYLVGNLALAVILLDGGLRTRVASFR 85
>sp|O56677|VGLG_COCAV Glycoprotein G OS=Cocal virus GN=G PE=3 SV=1
Length = 512
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 19 GGLGHWNSPLPYLFGGLGLMMGLITVALMILACSYRKSSSNSATDHADEDKS 70
G W S + F +G+ + L VA +++A YR SN+ + D + S
Sbjct: 457 GWFSSWKSTVVTFFFAIGVFILLYVVARIVIAVRYRYQGSNNKRIYNDIEMS 508
>sp|Q1IG71|CVRA_PSEE4 Cell volume regulation protein A homolog OS=Pseudomonas
entomophila (strain L48) GN=cvrA PE=3 SV=1
Length = 580
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 14 GGVSGGGLGHWNSPLPYLFGGLGLMMGLITVALMILACSYR 54
GV GGG+ N P YL G L L + L+ L S+R
Sbjct: 45 AGVDGGGIIFNNYPTAYLVGNLALAVILLDGGLRTRVASFR 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,164,546
Number of Sequences: 539616
Number of extensions: 1607233
Number of successful extensions: 3816
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3781
Number of HSP's gapped (non-prelim): 34
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)