Query 035876
Match_columns 117
No_of_seqs 98 out of 107
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01102 Glycophorin_A: Glycop 87.3 0.62 1.3E-05 34.7 2.9 35 23-58 60-94 (122)
2 PF02439 Adeno_E3_CR2: Adenovi 86.7 1.5 3.2E-05 27.2 3.8 29 31-59 8-36 (38)
3 PF07204 Orthoreo_P10: Orthore 85.4 0.55 1.2E-05 34.3 1.7 37 22-58 36-72 (98)
4 PF12273 RCR: Chitin synthesis 71.6 4.2 9.1E-05 29.3 2.7 15 41-55 11-25 (130)
5 PF13214 DUF4022: Protein of u 70.0 4.5 9.8E-05 28.5 2.5 17 34-50 8-24 (83)
6 PF15347 PAG: Phosphoprotein a 65.7 5.1 0.00011 35.6 2.5 23 31-53 17-39 (428)
7 PF05454 DAG1: Dystroglycan (D 65.3 2.1 4.5E-05 36.0 0.0 7 86-92 209-215 (290)
8 TIGR00847 ccoS cytochrome oxid 64.2 13 0.00027 24.1 3.5 23 28-50 3-25 (51)
9 PRK09757 PTS system N-acetylga 64.1 9.2 0.0002 31.6 3.6 28 27-54 206-238 (267)
10 PF05283 MGC-24: Multi-glycosy 62.8 7.8 0.00017 30.8 2.8 21 30-50 162-182 (186)
11 PF14575 EphA2_TM: Ephrin type 62.2 8.8 0.00019 25.9 2.6 24 35-58 7-30 (75)
12 TIGR00822 EII-Sor PTS system, 61.4 17 0.00038 30.1 4.7 27 27-53 205-235 (265)
13 PF11174 DUF2970: Protein of u 60.7 15 0.00032 24.0 3.4 19 25-43 28-46 (56)
14 PF03597 CcoS: Cytochrome oxid 60.1 17 0.00036 22.8 3.5 22 29-50 3-24 (45)
15 PF05151 PsbM: Photosystem II 59.4 7.8 0.00017 23.0 1.7 14 39-52 6-19 (31)
16 PRK13592 ubiA prenyltransferas 58.5 12 0.00027 31.6 3.5 29 25-53 232-261 (299)
17 PF15048 OSTbeta: Organic solu 57.6 13 0.00028 28.2 3.1 26 26-51 33-58 (125)
18 PF06667 PspB: Phage shock pro 56.2 17 0.00036 25.1 3.2 28 30-57 3-30 (75)
19 PF02480 Herpes_gE: Alphaherpe 54.6 4.1 8.9E-05 35.7 0.0 35 22-56 345-383 (439)
20 TIGR02976 phageshock_pspB phag 53.5 19 0.00042 24.7 3.2 29 30-58 3-31 (75)
21 PF01299 Lamp: Lysosome-associ 52.9 12 0.00026 30.4 2.5 27 31-58 275-301 (306)
22 PF12273 RCR: Chitin synthesis 51.9 6 0.00013 28.5 0.5 24 37-60 4-27 (130)
23 PF02480 Herpes_gE: Alphaherpe 51.8 4.8 0.0001 35.2 0.0 41 22-62 339-386 (439)
24 PF14914 LRRC37AB_C: LRRC37A/B 50.6 22 0.00048 27.9 3.4 28 31-58 121-151 (154)
25 PF15345 TMEM51: Transmembrane 49.0 16 0.00035 30.2 2.6 30 21-50 53-82 (233)
26 PF09928 DUF2160: Predicted sm 48.1 20 0.00044 25.7 2.7 22 23-44 3-24 (88)
27 PF05399 EVI2A: Ectropic viral 47.9 18 0.00039 29.9 2.7 19 35-53 128-146 (227)
28 PF12911 OppC_N: N-terminal TM 47.7 22 0.00048 21.5 2.6 13 38-50 19-31 (56)
29 PF10215 Ost4: Oligosaccaryltr 47.0 33 0.00072 20.7 3.1 17 33-49 8-24 (35)
30 COG4594 FecB ABC-type Fe3+-cit 46.4 40 0.00087 29.0 4.6 23 35-57 6-28 (310)
31 PRK09458 pspB phage shock prot 45.9 30 0.00065 24.1 3.2 30 30-59 3-32 (75)
32 COG5416 Uncharacterized integr 45.8 29 0.00063 25.4 3.2 29 21-49 54-82 (98)
33 PHA02909 hypothetical protein; 45.8 24 0.00052 24.2 2.6 9 46-54 49-57 (72)
34 PF11980 DUF3481: Domain of un 45.5 32 0.00069 24.7 3.3 26 30-55 18-44 (87)
35 PF04277 OAD_gamma: Oxaloaceta 45.5 19 0.00042 23.4 2.2 16 39-54 17-32 (79)
36 PRK05419 putative sulfite oxid 44.4 30 0.00065 27.2 3.4 30 27-56 113-142 (205)
37 CHL00080 psbM photosystem II p 44.2 24 0.00051 21.5 2.2 13 38-50 5-17 (34)
38 PF06800 Sugar_transport: Suga 43.8 38 0.00083 28.2 4.1 34 21-58 94-127 (269)
39 COG3715 ManY Phosphotransferas 42.2 60 0.0013 27.3 5.0 14 25-38 203-216 (265)
40 TIGR03038 PS_II_psbM photosyst 42.0 27 0.00058 21.1 2.2 13 38-50 5-17 (33)
41 PRK14094 psbM photosystem II r 41.9 25 0.00054 23.0 2.1 13 38-50 5-17 (50)
42 PHA03283 envelope glycoprotein 41.7 51 0.0011 30.4 4.8 30 22-53 393-424 (542)
43 PF06305 DUF1049: Protein of u 41.4 45 0.00098 20.8 3.3 29 21-49 11-40 (68)
44 PF15339 Afaf: Acrosome format 40.8 37 0.00081 27.6 3.4 23 31-53 132-154 (200)
45 PF12259 DUF3609: Protein of u 40.5 30 0.00065 29.7 3.1 23 34-57 302-324 (361)
46 PF13295 DUF4077: Domain of un 40.2 11 0.00024 29.3 0.4 27 30-56 114-140 (175)
47 PRK11486 flagellar biosynthesi 39.7 77 0.0017 23.7 4.8 17 79-95 60-76 (124)
48 COG4961 TadG Flp pilus assembl 39.0 31 0.00068 26.1 2.7 20 33-52 21-40 (185)
49 PRK04989 psbM photosystem II r 38.3 33 0.0007 21.0 2.1 12 39-50 6-17 (35)
50 PF15330 SIT: SHP2-interacting 38.2 47 0.001 24.0 3.4 26 32-57 3-28 (107)
51 PF14991 MLANA: Protein melan- 37.8 11 0.00023 28.4 0.0 19 39-57 32-50 (118)
52 PF05568 ASFV_J13L: African sw 37.1 48 0.001 26.5 3.5 21 36-56 37-57 (189)
53 PF07172 GRP: Glycine rich pro 37.0 44 0.00096 23.6 3.0 7 50-56 22-28 (95)
54 PF03229 Alpha_GJ: Alphavirus 36.3 1.4E+02 0.003 22.8 5.7 36 21-57 74-117 (126)
55 PF01102 Glycophorin_A: Glycop 36.2 56 0.0012 24.3 3.6 31 31-61 70-100 (122)
56 PF14241 DUF4341: Domain of un 35.7 59 0.0013 21.1 3.3 22 26-49 1-22 (62)
57 PF09049 SNN_transmemb: Stanni 35.1 1E+02 0.0022 18.5 4.3 27 25-54 6-33 (33)
58 PF01998 DUF131: Protein of un 34.3 23 0.00049 23.7 1.1 25 26-50 32-59 (64)
59 PF06596 PsbX: Photosystem II 34.1 67 0.0015 19.9 3.1 20 31-50 12-31 (39)
60 PF11143 DUF2919: Protein of u 34.0 51 0.0011 25.0 3.1 23 34-57 57-79 (149)
61 PF06103 DUF948: Bacterial pro 33.5 39 0.00085 22.5 2.2 13 41-53 5-17 (90)
62 PF10873 DUF2668: Protein of u 33.3 44 0.00096 26.3 2.7 28 32-60 67-94 (155)
63 PRK13726 conjugal transfer pil 33.0 83 0.0018 24.7 4.2 34 25-58 7-43 (188)
64 PF01794 Ferric_reduct: Ferric 32.4 93 0.002 20.6 3.9 27 27-53 76-102 (125)
65 PRK13415 flagella biosynthesis 31.5 1.6E+02 0.0035 24.2 5.8 19 82-101 120-138 (219)
66 PF05255 UPF0220: Uncharacteri 31.2 62 0.0013 25.0 3.2 27 30-56 102-128 (166)
67 PRK05696 fliL flagellar basal 29.9 1.8E+02 0.0038 21.9 5.5 23 82-104 71-93 (170)
68 TIGR03054 photo_alph_chp1 puta 29.3 1.8E+02 0.0038 22.1 5.3 26 34-59 3-28 (135)
69 PF01034 Syndecan: Syndecan do 28.9 22 0.00048 24.1 0.4 12 42-53 24-35 (64)
70 PF13903 Claudin_2: PMP-22/EMP 28.9 91 0.002 21.7 3.5 25 31-55 73-97 (172)
71 cd02435 CCC1 CCC1. CCC1: This 28.3 93 0.002 25.1 3.9 30 28-57 173-207 (241)
72 PF13807 GNVR: G-rich domain o 28.3 1.2E+02 0.0025 20.0 3.8 20 25-44 54-73 (82)
73 PF15470 DUF4637: Domain of un 28.2 15 0.00033 29.1 -0.6 17 19-36 90-106 (173)
74 PF13798 PCYCGC: Protein of un 28.1 40 0.00086 26.4 1.7 22 38-59 1-22 (158)
75 PF15240 Pro-rich: Proline-ric 28.0 41 0.00088 26.8 1.8 13 38-50 2-14 (179)
76 PTZ00260 dolichyl-phosphate be 28.0 1.4E+02 0.003 24.5 4.9 19 82-100 67-85 (333)
77 COG4736 CcoQ Cbb3-type cytochr 27.7 1.1E+02 0.0024 20.4 3.5 27 31-57 5-31 (60)
78 PF04906 Tweety: Tweety; Inte 27.3 1.1E+02 0.0024 26.4 4.4 12 41-52 371-382 (406)
79 PF10883 DUF2681: Protein of u 27.1 70 0.0015 22.7 2.7 20 38-57 7-26 (87)
80 PRK10081 entericidin B membran 26.7 80 0.0017 20.4 2.6 21 35-55 6-26 (48)
81 PF04976 DmsC: DMSO reductase 26.6 93 0.002 25.1 3.6 28 19-46 140-168 (276)
82 PHA00736 hypothetical protein 26.5 59 0.0013 22.8 2.2 14 31-44 57-70 (79)
83 PRK15065 PTS system mannose-sp 26.3 1E+02 0.0023 25.5 3.9 27 27-53 206-236 (262)
84 PF06697 DUF1191: Protein of u 25.6 26 0.00056 29.5 0.3 59 19-96 208-267 (278)
85 PF04133 Vps55: Vacuolar prote 25.6 75 0.0016 23.4 2.7 18 39-56 7-24 (120)
86 PF15144 DUF4576: Domain of un 25.3 89 0.0019 22.4 2.9 11 42-52 12-22 (88)
87 PF14851 FAM176: FAM176 family 25.3 2.1E+02 0.0045 22.1 5.2 23 30-53 25-47 (153)
88 cd07387 MPP_PolD2_C PolD2 (DNA 25.2 44 0.00095 27.3 1.5 18 88-105 97-114 (257)
89 cd01059 CCC1_like CCC1-related 25.1 1.4E+02 0.0029 21.8 4.0 30 28-57 79-114 (143)
90 PF10717 ODV-E18: Occlusion-de 25.0 1.2E+02 0.0026 21.8 3.5 23 38-60 28-50 (85)
91 COG0813 DeoD Purine-nucleoside 24.9 24 0.00052 29.4 -0.0 16 88-103 16-32 (236)
92 PF06365 CD34_antigen: CD34/Po 24.8 67 0.0015 25.9 2.5 18 31-48 101-120 (202)
93 PF07589 VPEP: PEP-CTERM motif 24.7 96 0.0021 17.0 2.4 11 41-51 10-20 (25)
94 PF03381 CDC50: LEM3 (ligand-e 24.7 1.5E+02 0.0033 24.2 4.6 33 24-56 241-273 (278)
95 KOG3626 Organic anion transpor 24.1 1.3E+02 0.0028 28.6 4.5 27 29-55 673-699 (735)
96 PRK12785 fliL flagellar basal 24.1 97 0.0021 23.4 3.1 21 82-103 70-92 (166)
97 TIGR03007 pepcterm_ChnLen poly 24.0 1.3E+02 0.0029 25.5 4.2 31 27-57 411-441 (498)
98 PF10826 DUF2551: Protein of u 23.9 60 0.0013 23.1 1.8 18 33-50 44-61 (83)
99 PF10577 UPF0560: Uncharacteri 23.6 1E+02 0.0022 29.8 3.8 24 29-52 273-296 (807)
100 PRK13792 lysozyme inhibitor; P 23.1 44 0.00096 25.1 1.1 22 36-57 4-25 (127)
101 CHL00066 psbH photosystem II p 22.7 1.2E+02 0.0026 21.2 3.1 21 35-55 43-63 (73)
102 PF11353 DUF3153: Protein of u 22.7 1E+02 0.0022 23.8 3.1 7 19-25 177-183 (209)
103 PF06814 Lung_7-TM_R: Lung sev 22.5 1.4E+02 0.0031 23.8 4.0 38 19-56 38-75 (295)
104 PF11153 DUF2931: Protein of u 22.4 72 0.0016 24.6 2.2 19 40-58 5-23 (216)
105 TIGR01167 LPXTG_anchor LPXTG-m 22.0 1.4E+02 0.003 16.3 2.8 6 30-35 13-18 (34)
106 PLN00085 photosystem II reacti 21.7 77 0.0017 24.5 2.2 13 38-50 82-94 (149)
107 COG4885 Uncharacterized protei 21.6 78 0.0017 27.3 2.4 23 34-56 289-311 (312)
108 TIGR03363 VI_chp_8 type VI sec 21.6 45 0.00099 28.0 1.0 9 25-33 313-321 (353)
109 PF01940 DUF92: Integral membr 21.4 92 0.002 25.2 2.7 31 29-59 33-63 (226)
110 PF00974 Rhabdo_glycop: Rhabdo 21.4 31 0.00068 30.7 0.0 8 19-26 446-453 (501)
111 TIGR03501 gamma_C_targ gammapr 21.3 1E+02 0.0022 17.3 2.1 17 39-55 5-21 (26)
112 PRK10884 SH3 domain-containing 21.1 85 0.0019 24.9 2.4 17 30-47 174-190 (206)
113 PF01594 UPF0118: Domain of un 21.0 1.5E+02 0.0031 23.3 3.7 26 30-55 302-327 (327)
114 PF06387 Calcyon: D1 dopamine 20.9 72 0.0016 25.8 1.9 14 39-52 85-98 (186)
115 PF13623 SurA_N_2: SurA N-term 20.9 90 0.002 23.3 2.4 17 37-53 10-26 (145)
116 KOG4671 Brain cell membrane pr 20.3 96 0.0021 25.3 2.5 27 23-53 12-39 (201)
117 PF12606 RELT: Tumour necrosis 20.2 2.5E+02 0.0055 18.0 4.2 18 42-59 12-29 (50)
No 1
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.30 E-value=0.62 Score=34.69 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 035876 23 HWNSPLPYLFGGLGLMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 23 ~W~SPvPYLFgGLA~MLgLIAvALLILaCSy~K~ss 58 (117)
.+..|+= ...-|++|.|+|++.|||+-|-||+...
T Consensus 60 ~fs~~~i-~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 60 RFSEPAI-IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SSS-TCH-HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred Cccccce-eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445542 4456889999999999998888765543
No 2
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=86.66 E-value=1.5 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 035876 31 LFGGLGLMMGLITVALMILACSYRKSSSN 59 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy~K~ss~ 59 (117)
...|..+-|.+|.+..+.-+|-|||..++
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 56778888888999999999999997653
No 3
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=85.35 E-value=0.55 Score=34.30 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=29.6
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 035876 22 GHWNSPLPYLFGGLGLMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 22 ~~W~SPvPYLFgGLA~MLgLIAvALLILaCSy~K~ss 58 (117)
+..-+=.|||-+|=+++|.||-++|+.-.|.+||.+.
T Consensus 36 S~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~ 72 (98)
T PF07204_consen 36 SSFVAYWPYLAAGGGLILILIIIALVCCCRAKHKTSA 72 (98)
T ss_pred ehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHh
Confidence 4556677999999899998888888887788888653
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=71.55 E-value=4.2 Score=29.29 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhhcc
Q 035876 41 LITVALMILACSYRK 55 (117)
Q Consensus 41 LIAvALLILaCSy~K 55 (117)
+|.|.|++.+|-.+|
T Consensus 11 ~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 11 AILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344443333
No 5
>PF13214 DUF4022: Protein of unknown function (DUF4022)
Probab=69.99 E-value=4.5 Score=28.46 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035876 34 GLGLMMGLITVALMILA 50 (117)
Q Consensus 34 GLA~MLgLIAvALLILa 50 (117)
|+--+|.++++||++||
T Consensus 8 gm~~imsistlalllla 24 (83)
T PF13214_consen 8 GMNHIMSISTLALLLLA 24 (83)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 44445666666666554
No 6
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=65.66 E-value=5.1 Score=35.64 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 035876 31 LFGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy 53 (117)
|.|+||++-.++-|.+|||.||-
T Consensus 17 lwgsLaav~~f~lis~LifLCsS 39 (428)
T PF15347_consen 17 LWGSLAAVTTFLLISFLIFLCSS 39 (428)
T ss_pred eehHHHHHHHHHHHHHHHHHhhc
Confidence 67899998888888899999876
No 7
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=65.25 E-value=2.1 Score=35.99 Aligned_cols=7 Identities=43% Similarity=0.449 Sum_probs=0.0
Q ss_pred eeEEEec
Q 035876 86 KIVVIMA 92 (117)
Q Consensus 86 ~v~ViMa 92 (117)
+..|||-
T Consensus 209 ~~P~Ilk 215 (290)
T PF05454_consen 209 KSPVILK 215 (290)
T ss_dssp -------
T ss_pred CCCeeec
Confidence 6677774
No 8
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=64.17 E-value=13 Score=24.07 Aligned_cols=23 Identities=9% Similarity=0.288 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 035876 28 LPYLFGGLGLMMGLITVALMILA 50 (117)
Q Consensus 28 vPYLFgGLA~MLgLIAvALLILa 50 (117)
+-|+..++++++|+++++.++.+
T Consensus 3 il~~LIpiSl~l~~~~l~~f~Wa 25 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFLWS 25 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888889998888887777665
No 9
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=64.08 E-value=9.2 Score=31.56 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHH--HH---HHHHHHHHHHhhhc
Q 035876 27 PLPYLFGGLGLM--MG---LITVALMILACSYR 54 (117)
Q Consensus 27 PvPYLFgGLA~M--Lg---LIAvALLILaCSy~ 54 (117)
=.||+|.|+.+. ++ +|++|++-++|.+.
T Consensus 206 ~~~ff~lGF~l~ayl~~~~~i~iaiig~~iA~~ 238 (267)
T PRK09757 206 YIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVY 238 (267)
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Confidence 469999998764 22 57777766666553
No 10
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=62.82 E-value=7.8 Score=30.77 Aligned_cols=21 Identities=19% Similarity=0.637 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035876 30 YLFGGLGLMMGLITVALMILA 50 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILa 50 (117)
-++||+.+.|||+||++.++-
T Consensus 162 SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 162 SFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred hhhhHHHHHHHHHHHHHHHhh
Confidence 389999999999999887653
No 11
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=62.17 E-value=8.8 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC
Q 035876 35 LGLMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 35 LA~MLgLIAvALLILaCSy~K~ss 58 (117)
++.++.|+++.++++.|.+|+..+
T Consensus 7 ~~g~~~ll~~v~~~~~~~rr~~~~ 30 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCFRRCKYS 30 (75)
T ss_dssp HHHHHHHHHHHHHHHCCCTT----
T ss_pred HHHHHHHHHhheeEEEEEeeEcCC
Confidence 444555566666677777766543
No 12
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=61.42 E-value=17 Score=30.05 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHHH----HHHHHHHHHhhh
Q 035876 27 PLPYLFGGLGLMMGL----ITVALMILACSY 53 (117)
Q Consensus 27 PvPYLFgGLA~MLgL----IAvALLILaCSy 53 (117)
=.||+|.|+.++--| +++|++-+++.+
T Consensus 205 ~~~ff~lGF~laayl~l~~l~iAiig~~~A~ 235 (265)
T TIGR00822 205 LMPFFYLGFLFAAYTDFSLLAFGAVGGAGAL 235 (265)
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 479999999876444 666665555544
No 13
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=60.74 E-value=15 Score=23.96 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=14.4
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 035876 25 NSPLPYLFGGLGLMMGLIT 43 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIA 43 (117)
.+|.||++.|+.+.+.+|+
T Consensus 28 ~~p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 28 GSPVHFIIVGIILAALFVA 46 (56)
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 4799999999876665554
No 14
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=60.11 E-value=17 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 035876 29 PYLFGGLGLMMGLITVALMILA 50 (117)
Q Consensus 29 PYLFgGLA~MLgLIAvALLILa 50 (117)
-|+..++++++++++++.++.+
T Consensus 3 l~~lip~sl~l~~~~l~~f~Wa 24 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAAFLWA 24 (45)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888877776665
No 15
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=59.43 E-value=7.8 Score=23.05 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhh
Q 035876 39 MGLITVALMILACS 52 (117)
Q Consensus 39 LgLIAvALLILaCS 52 (117)
+|+||.||.|+.++
T Consensus 6 l~fiAtaLfi~iPt 19 (31)
T PF05151_consen 6 LAFIATALFILIPT 19 (31)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 57788888877754
No 16
>PRK13592 ubiA prenyltransferase; Provisional
Probab=58.52 E-value=12 Score=31.60 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=22.9
Q ss_pred CCChhHH-HHHHHHHHHHHHHHHHHHHhhh
Q 035876 25 NSPLPYL-FGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 25 ~SPvPYL-FgGLA~MLgLIAvALLILaCSy 53 (117)
-||.||+ ++.++..+.+++.++++++|..
T Consensus 232 ~s~lp~~~~g~~g~~~l~~~~~~~l~~~~~ 261 (299)
T PRK13592 232 TNFALLWNISHVGVVVLVLNVIWMTVQFEQ 261 (299)
T ss_pred HhhHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3789999 7777777777888888888863
No 17
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=57.56 E-value=13 Score=28.24 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHh
Q 035876 26 SPLPYLFGGLGLMMGLITVALMILAC 51 (117)
Q Consensus 26 SPvPYLFgGLA~MLgLIAvALLILaC 51 (117)
||--|-..+|+++..+|.|.||...-
T Consensus 33 tpWNysiL~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 33 TPWNYSILALSFVVLVISFFLLGRSI 58 (125)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 56679999999999999999987653
No 18
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=56.20 E-value=17 Score=25.09 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 035876 30 YLFGGLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCSy~K~s 57 (117)
+.|...-+++++|-||.+-|..-|++..
T Consensus 3 ~~fl~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 3 FEFLFVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777778888887777776544
No 19
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=54.56 E-value=4.1 Score=35.67 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHHH----HHHHHHHHHHHHHHHhhhccc
Q 035876 22 GHWNSPLPYLFGGL----GLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 22 ~~W~SPvPYLFgGL----A~MLgLIAvALLILaCSy~K~ 56 (117)
..|.++.-.+.+++ ++++.++.++++++.|.+||.
T Consensus 345 ~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~ 383 (439)
T PF02480_consen 345 SPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRR 383 (439)
T ss_dssp ---------------------------------------
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhheeeeehhccc
Confidence 44555544444444 344444444444444555443
No 20
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=53.46 E-value=19 Score=24.68 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 035876 30 YLFGGLGLMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCSy~K~ss 58 (117)
+.|..+-+++++|-||.+-|..-|++...
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45777777888888888888888875443
No 21
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=52.89 E-value=12 Score=30.45 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 035876 31 LFGGLGLMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy~K~ss 58 (117)
+..|+++ .|||.+.|+.-.|.|||.++
T Consensus 275 IaVG~~L-a~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 275 IAVGAAL-AGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHH-HHHHHHHHHhheeEeccccc
Confidence 4455443 56677777777777777665
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=51.93 E-value=6 Score=28.48 Aligned_cols=24 Identities=21% Similarity=0.258 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCC
Q 035876 37 LMMGLITVALMILACSYRKSSSNS 60 (117)
Q Consensus 37 ~MLgLIAvALLILaCSy~K~ss~s 60 (117)
+.++||+++||+|+..++.+.+..
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666655543
No 23
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=51.83 E-value=4.8 Score=35.24 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHH-------HHhhhcccCCCCCC
Q 035876 22 GHWNSPLPYLFGGLGLMMGLITVALMI-------LACSYRKSSSNSAT 62 (117)
Q Consensus 22 ~~W~SPvPYLFgGLA~MLgLIAvALLI-------LaCSy~K~ss~s~~ 62 (117)
.....|-+=-.-++.+++++|+++++| ++|.++|..+...+
T Consensus 339 ~~~~~p~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 339 AAPAPPSPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ------------------------------------------------
T ss_pred CCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 344555666666677776665444333 23777777777544
No 24
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=50.58 E-value=22 Score=27.87 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred HHHHHH---HHHHHHHHHHHHHHhhhcccCC
Q 035876 31 LFGGLG---LMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 31 LFgGLA---~MLgLIAvALLILaCSy~K~ss 58 (117)
|.+++. ++|.||.+.-||-.||+|+.+.
T Consensus 121 lilaisvtvv~~iliii~CLiei~shr~a~~ 151 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICSHRRASE 151 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 455544 4566788888888999998764
No 25
>PF15345 TMEM51: Transmembrane protein 51
Probab=48.96 E-value=16 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 035876 21 LGHWNSPLPYLFGGLGLMMGLITVALMILA 50 (117)
Q Consensus 21 ~~~W~SPvPYLFgGLA~MLgLIAvALLILa 50 (117)
...=.+-|-|+..|-++||.|+++.|-|--
T Consensus 53 ~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~ 82 (233)
T PF15345_consen 53 LKSKTFSVAYVLVGSGVALLLLSICLSIRD 82 (233)
T ss_pred ccceeEEEEEehhhHHHHHHHHHHHHHHHH
Confidence 466667899999999999999998887754
No 26
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=48.07 E-value=20 Score=25.74 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=18.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHH
Q 035876 23 HWNSPLPYLFGGLGLMMGLITV 44 (117)
Q Consensus 23 ~W~SPvPYLFgGLA~MLgLIAv 44 (117)
.|..|+--+|+++++||+..++
T Consensus 3 aWT~ptA~FF~~I~~~L~~mtv 24 (88)
T PF09928_consen 3 AWTWPTAIFFICIALMLAGMTV 24 (88)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998877654
No 27
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=47.85 E-value=18 Score=29.94 Aligned_cols=19 Identities=26% Similarity=0.773 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 035876 35 LGLMMGLITVALMILACSY 53 (117)
Q Consensus 35 LA~MLgLIAvALLILaCSy 53 (117)
.|..+.||-+|.|+|.|..
T Consensus 128 ~amLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTL 146 (227)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4566778889999999953
No 28
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=47.74 E-value=22 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 035876 38 MMGLITVALMILA 50 (117)
Q Consensus 38 MLgLIAvALLILa 50 (117)
|+|+|-+.++++.
T Consensus 19 ~~gl~il~~~vl~ 31 (56)
T PF12911_consen 19 VIGLIILLILVLL 31 (56)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 29
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=46.97 E-value=33 Score=20.66 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035876 33 GGLGLMMGLITVALMIL 49 (117)
Q Consensus 33 gGLA~MLgLIAvALLIL 49 (117)
..||..||+.++.|+++
T Consensus 8 ~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 8 YTLANFLGVAAMVLIVL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888888888876
No 30
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=46.39 E-value=40 Score=29.00 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC
Q 035876 35 LGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 35 LA~MLgLIAvALLILaCSy~K~s 57 (117)
.++|++|+..-||+-+||-....
T Consensus 6 ~~~i~~lll~lllva~C~~s~~~ 28 (310)
T COG4594 6 TAIILTLLLLLLLVAACSSSDNN 28 (310)
T ss_pred hHHHHHHHHHHHHHHHhcCcCcc
Confidence 47788999999999999866433
No 31
>PRK09458 pspB phage shock protein B; Provisional
Probab=45.90 E-value=30 Score=24.13 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 035876 30 YLFGGLGLMMGLITVALMILACSYRKSSSN 59 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCSy~K~ss~ 59 (117)
++|...-+++++|-||.+=|..-|+.....
T Consensus 3 ~~fl~~PliiF~ifVaPiWL~LHY~sk~~~ 32 (75)
T PRK09458 3 ALFLAIPLTIFVLFVAPIWLWLHYRSKRQG 32 (75)
T ss_pred chHHHHhHHHHHHHHHHHHHHHhhcccccC
Confidence 678888899999999999999888664433
No 32
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=45.84 E-value=29 Score=25.42 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=23.8
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 035876 21 LGHWNSPLPYLFGGLGLMMGLITVALMIL 49 (117)
Q Consensus 21 ~~~W~SPvPYLFgGLA~MLgLIAvALLIL 49 (117)
++.|+=|.=-.+.|-++|-+||++.+.+-
T Consensus 54 fg~~~~PLilvil~s~v~G~Li~~~~~~~ 82 (98)
T COG5416 54 FGQWELPLILVILGAAVVGALIAMFAGIA 82 (98)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 36688888888999999999999887664
No 33
>PHA02909 hypothetical protein; Provisional
Probab=45.75 E-value=24 Score=24.18 Aligned_cols=9 Identities=67% Similarity=1.158 Sum_probs=6.8
Q ss_pred HHHHHhhhc
Q 035876 46 LMILACSYR 54 (117)
Q Consensus 46 LLILaCSy~ 54 (117)
..||||||-
T Consensus 49 ftilacsyv 57 (72)
T PHA02909 49 FTILACSYV 57 (72)
T ss_pred HHHHHHHHH
Confidence 358899984
No 34
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=45.54 E-value=32 Score=24.75 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhcc
Q 035876 30 YLFGGLGLMMGLITVALMI-LACSYRK 55 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLI-LaCSy~K 55 (117)
|++.|=++.+.|++++|.+ |-|-|+.
T Consensus 18 yiiA~gga~llL~~v~l~vvL~C~r~~ 44 (87)
T PF11980_consen 18 YIIAMGGALLLLVAVCLGVVLYCHRFH 44 (87)
T ss_pred HHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 5677777778888888544 4444433
No 35
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=45.50 E-value=19 Score=23.39 Aligned_cols=16 Identities=31% Similarity=0.220 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhhc
Q 035876 39 MGLITVALMILACSYR 54 (117)
Q Consensus 39 LgLIAvALLILaCSy~ 54 (117)
++|+-+.+++-.-++.
T Consensus 17 ~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 17 LVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 36
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=44.40 E-value=30 Score=27.22 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 035876 27 PLPYLFGGLGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 27 PvPYLFgGLA~MLgLIAvALLILaCSy~K~ 56 (117)
..||+..|+.+++.|+.+|+.-.-+.+||.
T Consensus 113 ~~~~i~~G~ia~~lLl~LaiTS~~~~~rrL 142 (205)
T PRK05419 113 KRPYITVGMAAFLILLPLALTSTRASQRRL 142 (205)
T ss_pred hchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 468999999999999999999988888765
No 37
>CHL00080 psbM photosystem II protein M
Probab=44.16 E-value=24 Score=21.45 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 035876 38 MMGLITVALMILA 50 (117)
Q Consensus 38 MLgLIAvALLILa 50 (117)
.+|+||.+|.|+.
T Consensus 5 ~lgfiAt~LFi~i 17 (34)
T CHL00080 5 ILAFIATALFILV 17 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 3667777777665
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=43.84 E-value=38 Score=28.17 Aligned_cols=34 Identities=32% Similarity=0.603 Sum_probs=24.9
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 035876 21 LGHWNSPLPYLFGGLGLMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 21 ~~~W~SPvPYLFgGLA~MLgLIAvALLILaCSy~K~ss 58 (117)
|..|++..-+++|-+|+.+-++.+.| ||+++..+
T Consensus 94 fgEW~~~~~~~~G~~Al~liiiGv~l----ts~~~~~~ 127 (269)
T PF06800_consen 94 FGEWTTTTQKIIGFLALVLIIIGVIL----TSYQDKKS 127 (269)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHH----hccccccc
Confidence 57899999999888888777776654 55554443
No 39
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=42.24 E-value=60 Score=27.26 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=10.9
Q ss_pred CCChhHHHHHHHHH
Q 035876 25 NSPLPYLFGGLGLM 38 (117)
Q Consensus 25 ~SPvPYLFgGLA~M 38 (117)
+.=.||+|.|+.+.
T Consensus 203 k~~~pff~lGFv~a 216 (265)
T COG3715 203 KELIPFFFLGFVLA 216 (265)
T ss_pred cchhHHHHHHHHHH
Confidence 34579999998765
No 40
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=41.97 E-value=27 Score=21.06 Aligned_cols=13 Identities=38% Similarity=0.795 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 035876 38 MMGLITVALMILA 50 (117)
Q Consensus 38 MLgLIAvALLILa 50 (117)
.+|+||.||.|+.
T Consensus 5 ~l~fiAt~Lfi~i 17 (33)
T TIGR03038 5 ILGFIATLLFILV 17 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3567777776665
No 41
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=41.90 E-value=25 Score=22.97 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 035876 38 MMGLITVALMILA 50 (117)
Q Consensus 38 MLgLIAvALLILa 50 (117)
.||+||.||.|+.
T Consensus 5 ~lgfiAtaLFi~i 17 (50)
T PRK14094 5 NFGFVASLLFVGV 17 (50)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777776665
No 42
>PHA03283 envelope glycoprotein E; Provisional
Probab=41.69 E-value=51 Score=30.42 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=24.4
Q ss_pred cCCCCChhH--HHHHHHHHHHHHHHHHHHHHhhh
Q 035876 22 GHWNSPLPY--LFGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 22 ~~W~SPvPY--LFgGLA~MLgLIAvALLILaCSy 53 (117)
..| +-+| +++|+.+..||+.++|.+.+|-+
T Consensus 393 ~~~--~~~~l~~~~~~~~~~~~~~~~l~vw~c~~ 424 (542)
T PHA03283 393 GAW--TRHYLAFLLAIICTCAALLVALVVWGCIL 424 (542)
T ss_pred Ccc--ccccchhHHHHHHHHHHHHHHHhhhheee
Confidence 356 3556 58888899999999999999987
No 43
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.42 E-value=45 Score=20.82 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=16.4
Q ss_pred ccCCCCChhH-HHHHHHHHHHHHHHHHHHH
Q 035876 21 LGHWNSPLPY-LFGGLGLMMGLITVALMIL 49 (117)
Q Consensus 21 ~~~W~SPvPY-LFgGLA~MLgLIAvALLIL 49 (117)
+..|+.+.|. +...+++.+|.+...|+.+
T Consensus 11 ~~~~~~~~pl~l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 11 FLFGQFPLPLGLLILIAFLLGALLGWLLSL 40 (68)
T ss_pred EEeeeccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777775 4445555566655554443
No 44
>PF15339 Afaf: Acrosome formation-associated factor
Probab=40.83 E-value=37 Score=27.55 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 035876 31 LFGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy 53 (117)
|..|+.+|-.+|-+.||++.|.-
T Consensus 132 LmLGIsLmTl~lfv~Ll~~c~at 154 (200)
T PF15339_consen 132 LMLGISLMTLFLFVILLAFCSAT 154 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998888753
No 45
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=40.52 E-value=30 Score=29.71 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 035876 34 GLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 34 GLA~MLgLIAvALLILaCSy~K~s 57 (117)
..+..++||++ |+.|+|-||+.+
T Consensus 302 ~v~~~~vli~v-l~~~~~~~~~~~ 324 (361)
T PF12259_consen 302 AVCGAIVLIIV-LISLAWLYRTFR 324 (361)
T ss_pred ehhHHHHHHHH-HHHHHhheeehH
Confidence 34455566655 667777776643
No 46
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=40.18 E-value=11 Score=29.33 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 035876 30 YLFGGLGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCSy~K~ 56 (117)
||---|.++||=+|+.|....||||..
T Consensus 114 ylserlvvilggvavvltfilcsywpe 140 (175)
T PF13295_consen 114 YLSERLVVILGGVAVVLTFILCSYWPE 140 (175)
T ss_pred HHHhHHHHhcccchheeehhhhhcChH
Confidence 555567788888999999999999974
No 47
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=39.72 E-value=77 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=11.0
Q ss_pred ccccCCCeeEEEecCCC
Q 035876 79 MQTEMEPKIVVIMAGDD 95 (117)
Q Consensus 79 ~~~~~~~~v~ViMaGd~ 95 (117)
.++-..|+|+|+=.||+
T Consensus 60 ~slG~RErvvvVeV~~~ 76 (124)
T PRK11486 60 ASLGARERVVIVDVEDA 76 (124)
T ss_pred eccCCccEEEEEEECCE
Confidence 34556677777766664
No 48
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion]
Probab=39.03 E-value=31 Score=26.12 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 035876 33 GGLGLMMGLITVALMILACS 52 (117)
Q Consensus 33 gGLA~MLgLIAvALLILaCS 52 (117)
|..|+|++||+.-|++|.+-
T Consensus 21 Ga~AVeFAlvap~ll~l~~g 40 (185)
T COG4961 21 GAAAVEFALVAPPLLLLVFG 40 (185)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 56789999999999988864
No 49
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=38.30 E-value=33 Score=20.95 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 035876 39 MGLITVALMILA 50 (117)
Q Consensus 39 LgLIAvALLILa 50 (117)
+|+||.+|.|+.
T Consensus 6 lgfiAt~Lfi~i 17 (35)
T PRK04989 6 LGFVASLLFVLV 17 (35)
T ss_pred HHHHHHHHHHHH
Confidence 566666666654
No 50
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=38.17 E-value=47 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.315 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC
Q 035876 32 FGGLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 32 FgGLA~MLgLIAvALLILaCSy~K~s 57 (117)
..++.++|-||.++.-|++|-.+|+.
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666678888888888776654
No 51
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=37.79 E-value=11 Score=28.44 Aligned_cols=19 Identities=26% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcccC
Q 035876 39 MGLITVALMILACSYRKSS 57 (117)
Q Consensus 39 LgLIAvALLILaCSy~K~s 57 (117)
|.+|-..||++-|-|.|.+
T Consensus 32 L~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 32 LIVILGILLLIGCWYCKRR 50 (118)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHhheeeeec
Confidence 3344445667777776543
No 52
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=37.09 E-value=48 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 035876 36 GLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 36 A~MLgLIAvALLILaCSy~K~ 56 (117)
+..+-+|-+-+||..||+||.
T Consensus 37 aIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 37 AIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHhhhhH
Confidence 333334556677778999885
No 53
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.03 E-value=44 Score=23.63 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=3.1
Q ss_pred Hhhhccc
Q 035876 50 ACSYRKS 56 (117)
Q Consensus 50 aCSy~K~ 56 (117)
.++-+.+
T Consensus 22 evaa~~~ 28 (95)
T PF07172_consen 22 EVAAREL 28 (95)
T ss_pred hhhhHHh
Confidence 3444444
No 54
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=36.33 E-value=1.4e+02 Score=22.82 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=20.0
Q ss_pred ccCCCCC-----hhHHHHHHHHHHHHHH---HHHHHHHhhhcccC
Q 035876 21 LGHWNSP-----LPYLFGGLGLMMGLIT---VALMILACSYRKSS 57 (117)
Q Consensus 21 ~~~W~SP-----vPYLFgGLA~MLgLIA---vALLILaCSy~K~s 57 (117)
..+|.+| +|-++|||++. .|++ ++||==.|-+|-+.
T Consensus 74 ~sp~ps~p~d~aLp~VIGGLcaL-~LaamGA~~LLrR~cRr~arr 117 (126)
T PF03229_consen 74 SSPGPSPPVDFALPLVIGGLCAL-TLAAMGAGALLRRCCRRAARR 117 (126)
T ss_pred CCCCCCCCcccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3566665 57788888764 3333 33333346555443
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.17 E-value=56 Score=24.29 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 035876 31 LFGGLGLMMGLITVALMILACSYRKSSSNSA 61 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy~K~ss~s~ 61 (117)
+||-+|.++|+|++.+..+-=-++|...+..
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk~~~~~~ 100 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKKSSSDVQ 100 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 4666777777777777777777777766543
No 56
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=35.67 E-value=59 Score=21.08 Aligned_cols=22 Identities=41% Similarity=0.847 Sum_probs=14.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 035876 26 SPLPYLFGGLGLMMGLITVALMIL 49 (117)
Q Consensus 26 SPvPYLFgGLA~MLgLIAvALLIL 49 (117)
||.+.++||+ ++|+-++.|+.+
T Consensus 1 Tp~~~l~GG~--lIGla~~~ll~~ 22 (62)
T PF14241_consen 1 TPWSALIGGL--LIGLAASLLLLL 22 (62)
T ss_pred CccHHHHHHH--HHHHHHHHHHHH
Confidence 5788888885 556655555554
No 57
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=35.13 E-value=1e+02 Score=18.47 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=14.5
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHhhhc
Q 035876 25 NSPLPYLFGGLGLMMGLITVA-LMILACSYR 54 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIAvA-LLILaCSy~ 54 (117)
|||+- |-.-...-|||+| |-+|.|-.|
T Consensus 6 hsptt---gvvti~viliavaalg~licgcw 33 (33)
T PF09049_consen 6 HSPTT---GVVTIIVILIAVAALGALICGCW 33 (33)
T ss_dssp TTTHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc---cEEEehhHHHHHHHHhhhheecC
Confidence 45653 3334455567775 446666544
No 58
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=34.27 E-value=23 Score=23.75 Aligned_cols=25 Identities=36% Similarity=0.802 Sum_probs=15.2
Q ss_pred CChhHHHHH---HHHHHHHHHHHHHHHH
Q 035876 26 SPLPYLFGG---LGLMMGLITVALMILA 50 (117)
Q Consensus 26 SPvPYLFgG---LA~MLgLIAvALLILa 50 (117)
=|+|-.||. ++..+.++|+.|+++.
T Consensus 32 GPIPIvFGs~~~~~~~~~ilaiil~i~~ 59 (64)
T PF01998_consen 32 GPIPIVFGSSPRIAKIAMILAIILMILA 59 (64)
T ss_pred ecccEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 378888874 4555555555555544
No 59
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=34.10 E-value=67 Score=19.90 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035876 31 LFGGLGLMMGLITVALMILA 50 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILa 50 (117)
|+.|-++.++.|+.||+...
T Consensus 12 l~aG~~iVv~~i~~ali~VS 31 (39)
T PF06596_consen 12 LVAGAVIVVIPIAGALIFVS 31 (39)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhheEEEe
Confidence 56677778888888887654
No 60
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=34.05 E-value=51 Score=25.02 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 035876 34 GLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 34 GLA~MLgLIAvALLILaCSy~K~s 57 (117)
.++..+|+.|+.++ +.|++|+..
T Consensus 57 ~lgL~~g~Pall~~-~l~~~R~~~ 79 (149)
T PF11143_consen 57 YLGLAAGLPALLLM-LLSGRRHRS 79 (149)
T ss_pred HHHHHHhHHHHHHH-HHHccCCCC
Confidence 46677899999888 888888754
No 61
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=33.46 E-value=39 Score=22.53 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhh
Q 035876 41 LITVALMILACSY 53 (117)
Q Consensus 41 LIAvALLILaCSy 53 (117)
++|+|+++|+|.-
T Consensus 5 I~Aiaf~vLvi~l 17 (90)
T PF06103_consen 5 IAAIAFAVLVIFL 17 (90)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665543
No 62
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=33.29 E-value=44 Score=26.25 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 035876 32 FGGLGLMMGLITVALMILACSYRKSSSNS 60 (117)
Q Consensus 32 FgGLA~MLgLIAvALLILaCSy~K~ss~s 60 (117)
.+|..++||+||. ..|..|-+-|+++.+
T Consensus 67 VfgiVfimgvva~-i~icvCmc~kn~rgs 94 (155)
T PF10873_consen 67 VFGIVFIMGVVAG-IAICVCMCMKNSRGS 94 (155)
T ss_pred ehhhHHHHHHHHH-HHHHHhhhhhcCCCc
Confidence 4677788888774 456667777766543
No 63
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=33.03 E-value=83 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=26.0
Q ss_pred CCChhHH---HHHHHHHHHHHHHHHHHHHhhhcccCC
Q 035876 25 NSPLPYL---FGGLGLMMGLITVALMILACSYRKSSS 58 (117)
Q Consensus 25 ~SPvPYL---FgGLA~MLgLIAvALLILaCSy~K~ss 58 (117)
+|-.=++ |.+|+..+.|..++.++|+|.-|+...
T Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~~~v~l~~~~~~~~~ 43 (188)
T PRK13726 7 LSTSRVMAIAFIFLSVLIVLSLSVNVIQGVNNYRLQN 43 (188)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455 888888888888999999999887653
No 64
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=32.41 E-value=93 Score=20.64 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 035876 27 PLPYLFGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 27 PvPYLFgGLA~MLgLIAvALLILaCSy 53 (117)
.-||...|+.+++.++.+++.-+.+-|
T Consensus 76 ~~~~~~~G~~a~~~l~~l~~tS~~~~R 102 (125)
T PF01794_consen 76 TGPYNLTGIIALLLLLILAVTSFPWIR 102 (125)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667788877777777776666666
No 65
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=31.46 E-value=1.6e+02 Score=24.18 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=10.1
Q ss_pred cCCCeeEEEecCCCCCceee
Q 035876 82 EMEPKIVVIMAGDDNPSYLA 101 (117)
Q Consensus 82 ~~~~~v~ViMaGd~~PtflA 101 (117)
.-+++++||=.|| .=++|.
T Consensus 120 eVG~k~LVvGV~d-sI~lL~ 138 (219)
T PRK13415 120 KVGNRVLVVGVGE-SIQLLK 138 (219)
T ss_pred EECCEEEEEEecC-ceeEee
Confidence 3456666666665 334443
No 66
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=31.19 E-value=62 Score=25.01 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 035876 30 YLFGGLGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCSy~K~ 56 (117)
.||.|+++|.|=++-|+-||.=-|-..
T Consensus 102 ~LFigf~l~fggl~~s~~vli~~yv~~ 128 (166)
T PF05255_consen 102 WLFIGFALSFGGLAGSVWVLILKYVVP 128 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 699999999999999999998655433
No 67
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.88 E-value=1.8e+02 Score=21.87 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=16.7
Q ss_pred cCCCeeEEEecCCCCCceeeccc
Q 035876 82 EMEPKIVVIMAGDDNPSYLAKPV 104 (117)
Q Consensus 82 ~~~~~v~ViMaGd~~PtflA~P~ 104 (117)
+.++.++|=++++..-+||-.=+
T Consensus 71 ~l~~~fvvNl~~~~~~ryLkv~i 93 (170)
T PRK05696 71 PMPRPFVFNVPGNGRDRLVQIKV 93 (170)
T ss_pred ecCCCEEEEecCCCCceEEEEEE
Confidence 44567888888888888986433
No 68
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=29.31 E-value=1.8e+02 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCC
Q 035876 34 GLGLMMGLITVALMILACSYRKSSSN 59 (117)
Q Consensus 34 GLA~MLgLIAvALLILaCSy~K~ss~ 59 (117)
-|-+|++|+.++|.+.+.+++.....
T Consensus 3 ~l~a~~~Lvl~~~~lva~a~~Tg~~~ 28 (135)
T TIGR03054 3 LLIAMLGLVLLTFALVAFAVLTGVGH 28 (135)
T ss_pred HHHHHHHHHHHHHHHhheeeecCCCc
Confidence 46789999999999999999885443
No 69
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.94 E-value=22 Score=24.14 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhh
Q 035876 42 ITVALMILACSY 53 (117)
Q Consensus 42 IAvALLILaCSy 53 (117)
.|+.|++|.+.|
T Consensus 24 ~ailLIlf~iyR 35 (64)
T PF01034_consen 24 FAILLILFLIYR 35 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 70
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=28.86 E-value=91 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 035876 31 LFGGLGLMMGLITVALMILACSYRK 55 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy~K 55 (117)
.|..+++++.++|+-+.++.|-+++
T Consensus 73 ~~~~l~~~~~~~a~~~~~~~~~~~~ 97 (172)
T PF13903_consen 73 AFLILGLLLLLFAFVFALIGFCKRS 97 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3555555555666555555554433
No 71
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=28.33 E-value=93 Score=25.11 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=17.0
Q ss_pred hhHHHH-----HHHHHHHHHHHHHHHHHhhhcccC
Q 035876 28 LPYLFG-----GLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 28 vPYLFg-----GLA~MLgLIAvALLILaCSy~K~s 57 (117)
+||+|. ++...+++-.++|.++-+.+-+.+
T Consensus 173 lPy~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s 207 (241)
T cd02435 173 LPYFFVSTVGEALLLSVIVTLVALFVFGYVKTWFT 207 (241)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478773 344555555566666655554444
No 72
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=28.31 E-value=1.2e+02 Score=19.99 Aligned_cols=20 Identities=45% Similarity=0.542 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 035876 25 NSPLPYLFGGLGLMMGLITV 44 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIAv 44 (117)
-+|-.-++..+++++||+.=
T Consensus 54 ~~P~~~lil~l~~~~Gl~lg 73 (82)
T PF13807_consen 54 VSPKRALILALGLFLGLILG 73 (82)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 35677788888888888543
No 73
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=28.17 E-value=15 Score=29.05 Aligned_cols=17 Identities=47% Similarity=0.991 Sum_probs=12.5
Q ss_pred CCccCCCCChhHHHHHHH
Q 035876 19 GGLGHWNSPLPYLFGGLG 36 (117)
Q Consensus 19 ~~~~~W~SPvPYLFgGLA 36 (117)
+|||-|-||.- |++||+
T Consensus 90 sgFWgwlsPfa-Ll~gl~ 106 (173)
T PF15470_consen 90 SGFWGWLSPFA-LLGGLA 106 (173)
T ss_pred CCchhhhcHHH-Hhcccc
Confidence 79999999853 455554
No 74
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=28.11 E-value=40 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhcccCCC
Q 035876 38 MMGLITVALMILACSYRKSSSN 59 (117)
Q Consensus 38 MLgLIAvALLILaCSy~K~ss~ 59 (117)
|+.++.++||+-+||-.+...+
T Consensus 1 ~~~~l~~~~llagCss~~~~~~ 22 (158)
T PF13798_consen 1 VIPLLSLSLLLAGCSSDEDSES 22 (158)
T ss_pred ChHHHHHHHHHHHcCCCCcccc
Confidence 4566777788888998766544
No 75
>PF15240 Pro-rich: Proline-rich
Probab=27.98 E-value=41 Score=26.83 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 035876 38 MMGLITVALMILA 50 (117)
Q Consensus 38 MLgLIAvALLILa 50 (117)
+|.|..+|||.|.
T Consensus 2 LlVLLSvALLALS 14 (179)
T PF15240_consen 2 LLVLLSVALLALS 14 (179)
T ss_pred hhHHHHHHHHHhh
Confidence 3567889999885
No 76
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=27.97 E-value=1.4e+02 Score=24.52 Aligned_cols=19 Identities=5% Similarity=0.291 Sum_probs=13.2
Q ss_pred cCCCeeEEEecCCCCCcee
Q 035876 82 EMEPKIVVIMAGDDNPSYL 100 (117)
Q Consensus 82 ~~~~~v~ViMaGd~~Ptfl 100 (117)
+..++|-||||--+.-..|
T Consensus 67 ~~~~~isVVIP~yNe~~~i 85 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRL 85 (333)
T ss_pred CCCeEEEEEEeeCCCHHHH
Confidence 4577899999866654444
No 77
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.68 E-value=1.1e+02 Score=20.39 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 035876 31 LFGGLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy~K~s 57 (117)
.+-|.+--.|+|++.|..++|-|+-.+
T Consensus 5 ~~~~~a~a~~t~~~~l~fiavi~~ayr 31 (60)
T COG4736 5 MMRGFADAWGTIAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778888999999998888776544
No 78
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=27.32 E-value=1.1e+02 Score=26.39 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhh
Q 035876 41 LITVALMILACS 52 (117)
Q Consensus 41 LIAvALLILaCS 52 (117)
|.|++|.++.|+
T Consensus 371 l~al~f~~~v~~ 382 (406)
T PF04906_consen 371 LAALLFSILVCV 382 (406)
T ss_pred HHHHHHHHHHHH
Confidence 344555555555
No 79
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.14 E-value=70 Score=22.68 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q 035876 38 MMGLITVALMILACSYRKSS 57 (117)
Q Consensus 38 MLgLIAvALLILaCSy~K~s 57 (117)
.++++++.++|++.-+||..
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44677777778787778764
No 80
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=26.67 E-value=80 Score=20.35 Aligned_cols=21 Identities=10% Similarity=0.498 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 035876 35 LGLMMGLITVALMILACSYRK 55 (117)
Q Consensus 35 LA~MLgLIAvALLILaCSy~K 55 (117)
+++|+.+++.++.+-+|---+
T Consensus 6 i~~i~~~l~~~~~l~~CnTv~ 26 (48)
T PRK10081 6 IAAIFSVLVLSTVLTACNTTR 26 (48)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 567777888888888895443
No 81
>PF04976 DmsC: DMSO reductase anchor subunit (DmsC); InterPro: IPR007059 The terminal electron transfer enzyme dimethyl sulphoxide reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC) []. This family represents DmsC.; GO: 0019645 anaerobic electron transport chain, 0016021 integral to membrane
Probab=26.60 E-value=93 Score=25.11 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred CCccCCCCChhH-HHHHHHHHHHHHHHHH
Q 035876 19 GGLGHWNSPLPY-LFGGLGLMMGLITVAL 46 (117)
Q Consensus 19 ~~~~~W~SPvPY-LFgGLA~MLgLIAvAL 46 (117)
-.+..||+|..+ .|.+-++++|....++
T Consensus 140 ~~vp~W~~~~T~~~f~~tal~~G~~l~~~ 168 (276)
T PF04976_consen 140 TTVPAWNSPWTPISFLGTALLLGAALAAL 168 (276)
T ss_pred cchhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 356789998655 7888888888865543
No 82
>PHA00736 hypothetical protein
Probab=26.50 E-value=59 Score=22.76 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 035876 31 LFGGLGLMMGLITV 44 (117)
Q Consensus 31 LFgGLA~MLgLIAv 44 (117)
||-|+++++||||=
T Consensus 57 lfwgi~vifgliag 70 (79)
T PHA00736 57 LFWGITVIFGLIAG 70 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 78899999999974
No 83
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=26.26 E-value=1e+02 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHHH----HHHHHHHHHhhh
Q 035876 27 PLPYLFGGLGLMMGL----ITVALMILACSY 53 (117)
Q Consensus 27 PvPYLFgGLA~MLgL----IAvALLILaCSy 53 (117)
=.||+|.|+.+.--| +++|++-.++.+
T Consensus 206 ~~~ff~lGFvl~ayl~l~~l~iAiig~~iA~ 236 (262)
T PRK15065 206 LMPFFYLGFVLAAFTNLNLIALGVIGVVLAL 236 (262)
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 469999999877544 777776666655
No 84
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=25.59 E-value=26 Score=29.54 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCccCCCCChhHHHHH-HHHHHHHHHHHHHHHHhhhcccCCCCCCCCccccccCCCCccccccccCCCeeEEEecCCCC
Q 035876 19 GGLGHWNSPLPYLFGG-LGLMMGLITVALMILACSYRKSSSNSATDHADEDKSAGHDKQVEMQTEMEPKIVVIMAGDDN 96 (117)
Q Consensus 19 ~~~~~W~SPvPYLFgG-LA~MLgLIAvALLILaCSy~K~ss~s~~~~~d~ek~~~~~~~~~~~~~~~~~v~ViMaGd~~ 96 (117)
+..|.|. +.+| ..-.++|+-++++++.|.++|....- .+-|...+.+|.+=+.|-|+.+
T Consensus 208 ~~~~~W~-----iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~--------------~eMEr~A~~gE~L~~~~VG~sr 267 (278)
T PF06697_consen 208 KRSWWWK-----IVVGVVGGVVLLGLLSLLVAMLVRYKRKKKI--------------EEMERRAEEGEALQMSWVGGSR 267 (278)
T ss_pred CcceeEE-----EEEEehHHHHHHHHHHHHHHhhhhhhHHHHH--------------HHHHHhhccCceeeeEEEcccc
Confidence 5667777 3333 22222345555667777776653210 0112233455666677777764
No 85
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=25.55 E-value=75 Score=23.39 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhccc
Q 035876 39 MGLITVALMILACSYRKS 56 (117)
Q Consensus 39 LgLIAvALLILaCSy~K~ 56 (117)
++-|++-|+||+|.-+|+
T Consensus 7 ~~aiG~lL~IL~CAL~~n 24 (120)
T PF04133_consen 7 FLAIGFLLVILSCALYKN 24 (120)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455788899999988775
No 86
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=25.34 E-value=89 Score=22.45 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=6.1
Q ss_pred HHHHHHHHHhh
Q 035876 42 ITVALMILACS 52 (117)
Q Consensus 42 IAvALLILaCS 52 (117)
+++-.|||-|-
T Consensus 12 lGLlvLIltC~ 22 (88)
T PF15144_consen 12 LGLLVLILTCH 22 (88)
T ss_pred HHHHHHHhhhc
Confidence 34445666674
No 87
>PF14851 FAM176: FAM176 family
Probab=25.28 E-value=2.1e+02 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 035876 30 YLFGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCSy 53 (117)
|+..|.++=|. +++.||+.-||.
T Consensus 25 YFv~gVC~GLl-LtLcllV~risc 47 (153)
T PF14851_consen 25 YFVSGVCAGLL-LTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHhhhee
Confidence 44444443332 566666777776
No 88
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=25.16 E-value=44 Score=27.33 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.2
Q ss_pred EEEecCCCCCceeecccc
Q 035876 88 VVIMAGDDNPSYLAKPVS 105 (117)
Q Consensus 88 ~ViMaGd~~PtflA~P~~ 105 (117)
++||||+.-|+=.+-|-+
T Consensus 97 V~imPG~~Dp~~~~lPQq 114 (257)
T cd07387 97 VDLMPGEFDPANHSLPQQ 114 (257)
T ss_pred EEECCCCCCcccccCCCC
Confidence 579999999999997743
No 89
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=25.14 E-value=1.4e+02 Score=21.82 Aligned_cols=30 Identities=33% Similarity=0.548 Sum_probs=15.7
Q ss_pred hhHHHHH---HHHHHHH---HHHHHHHHHhhhcccC
Q 035876 28 LPYLFGG---LGLMMGL---ITVALMILACSYRKSS 57 (117)
Q Consensus 28 vPYLFgG---LA~MLgL---IAvALLILaCSy~K~s 57 (117)
.||+|.. +++.+.+ ..++|.++.+...|.+
T Consensus 79 lp~~~~~~~~~a~~~si~~~~~~~l~~~g~~~~~~~ 114 (143)
T cd01059 79 LPYLLLPAGSLALAVSVALVVALALFLLGAFVAKLG 114 (143)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4787763 3444433 3455555555555544
No 90
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=24.98 E-value=1.2e+02 Score=21.77 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhhcccCCCC
Q 035876 38 MMGLITVALMILACSYRKSSSNS 60 (117)
Q Consensus 38 MLgLIAvALLILaCSy~K~ss~s 60 (117)
|-.||++-.+||.--...+||++
T Consensus 28 MtILivLVIIiLlImlfqsSS~~ 50 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLFQSSSNG 50 (85)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 33444444333333334555443
No 91
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=24.94 E-value=24 Score=29.36 Aligned_cols=16 Identities=44% Similarity=0.829 Sum_probs=12.9
Q ss_pred EEEecCCC-CCceeecc
Q 035876 88 VVIMAGDD-NPSYLAKP 103 (117)
Q Consensus 88 ~ViMaGd~-~PtflA~P 103 (117)
+|+||||- +++|+|.-
T Consensus 16 ~VLmPGDPlRAK~iAet 32 (236)
T COG0813 16 VVLMPGDPLRAKYIAET 32 (236)
T ss_pred eeecCCCCchHHHHHHH
Confidence 58999998 58888843
No 92
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=24.79 E-value=67 Score=25.88 Aligned_cols=18 Identities=17% Similarity=-0.075 Sum_probs=11.9
Q ss_pred HHHHHHHHH--HHHHHHHHH
Q 035876 31 LFGGLGLMM--GLITVALMI 48 (117)
Q Consensus 31 LFgGLA~ML--gLIAvALLI 48 (117)
+|.+|..+- -|||++++.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~ 120 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGA 120 (202)
T ss_pred EEEehHHhhHHHHHHHHHHH
Confidence 899999888 444444433
No 93
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=24.75 E-value=96 Score=17.00 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 035876 41 LITVALMILAC 51 (117)
Q Consensus 41 LIAvALLILaC 51 (117)
|+.+.|+.++.
T Consensus 10 l~~~gl~~l~~ 20 (25)
T PF07589_consen 10 LLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 94
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=24.65 E-value=1.5e+02 Score=24.19 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=24.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 035876 24 WNSPLPYLFGGLGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 24 W~SPvPYLFgGLA~MLgLIAvALLILaCSy~K~ 56 (117)
.+--..++|..+++...++++.|+++-+.+-|.
T Consensus 241 kn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~ 273 (278)
T PF03381_consen 241 KNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRK 273 (278)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 455677888888888888888888887765443
No 95
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.06 E-value=1.3e+02 Score=28.61 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 035876 29 PYLFGGLGLMMGLITVALMILACSYRK 55 (117)
Q Consensus 29 PYLFgGLA~MLgLIAvALLILaCSy~K 55 (117)
=|.|.||.+++.++++.++|+..--||
T Consensus 673 r~~y~gl~~~~~~~~~i~~i~~~~v~r 699 (735)
T KOG3626|consen 673 RYRYLGLHIILKVIALILLIIDLYVWR 699 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999988888755555
No 96
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.05 E-value=97 Score=23.43 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=13.6
Q ss_pred cCCCeeEEEecCCCC--Cceeecc
Q 035876 82 EMEPKIVVIMAGDDN--PSYLAKP 103 (117)
Q Consensus 82 ~~~~~v~ViMaGd~~--PtflA~P 103 (117)
+.+ .++|=+++++. ..||-.=
T Consensus 70 ~l~-~fvVNL~~~~~~~~ryLkv~ 92 (166)
T PRK12785 70 DVP-DMLVNLAGDPGERVQYLKLK 92 (166)
T ss_pred EcC-CEEEECCCCCCCcceEEEEE
Confidence 444 48898987653 5887533
No 97
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.96 E-value=1.3e+02 Score=25.53 Aligned_cols=31 Identities=23% Similarity=0.107 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 035876 27 PLPYLFGGLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 27 PvPYLFgGLA~MLgLIAvALLILaCSy~K~s 57 (117)
|-+-++.++++++|++.-..+++.+.++..+
T Consensus 411 P~~~~~l~~g~~~Gl~lg~~~~~l~e~ld~~ 441 (498)
T TIGR03007 411 PNRPLLMLAGLLGGLGAGIGLAFLLSQLRPT 441 (498)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6667888889999998777778888776543
No 98
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=23.92 E-value=60 Score=23.06 Aligned_cols=18 Identities=44% Similarity=0.630 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035876 33 GGLGLMMGLITVALMILA 50 (117)
Q Consensus 33 gGLA~MLgLIAvALLILa 50 (117)
=|.|+|+|+|+-=|=||-
T Consensus 44 ~~VasMVG~i~SrlGIL~ 61 (83)
T PF10826_consen 44 RGVASMVGLIHSRLGILS 61 (83)
T ss_pred HHHHHHHHHHHHhhhhee
Confidence 488999999998888885
No 99
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=23.57 E-value=1e+02 Score=29.80 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 035876 29 PYLFGGLGLMMGLITVALMILACS 52 (117)
Q Consensus 29 PYLFgGLA~MLgLIAvALLILaCS 52 (117)
=||.+-|+.|+.|+-+-|-+|.|.
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~y 296 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCY 296 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666555555555553
No 100
>PRK13792 lysozyme inhibitor; Provisional
Probab=23.12 E-value=44 Score=25.05 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccC
Q 035876 36 GLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 36 A~MLgLIAvALLILaCSy~K~s 57 (117)
++++.|+++++|+-+||.-...
T Consensus 4 ~l~~ll~~~~~lLsaCs~~~~~ 25 (127)
T PRK13792 4 ALWLLLAAVPVVLVACGGSDDD 25 (127)
T ss_pred HHHHHHHHHHhheecccCCCCC
Confidence 3667788899999999986554
No 101
>CHL00066 psbH photosystem II protein H
Probab=22.72 E-value=1.2e+02 Score=21.20 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 035876 35 LGLMMGLITVALMILACSYRK 55 (117)
Q Consensus 35 LA~MLgLIAvALLILaCSy~K 55 (117)
.++.|+|+|+.|+|+.=-|..
T Consensus 43 Mgv~m~lf~vfl~iiLeiyNs 63 (73)
T CHL00066 43 MGVAMALFAVFLSIILEIYNS 63 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 567788899999888765543
No 102
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=22.70 E-value=1e+02 Score=23.80 Aligned_cols=7 Identities=14% Similarity=-0.202 Sum_probs=4.4
Q ss_pred CCccCCC
Q 035876 19 GGLGHWN 25 (117)
Q Consensus 19 ~~~~~W~ 25 (117)
..+|.|+
T Consensus 177 ~~~w~pn 183 (209)
T PF11353_consen 177 ASFWVPN 183 (209)
T ss_pred EEEEecc
Confidence 3457777
No 103
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=22.45 E-value=1.4e+02 Score=23.82 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=31.9
Q ss_pred CCccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 035876 19 GGLGHWNSPLPYLFGGLGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 19 ~~~~~W~SPvPYLFgGLA~MLgLIAvALLILaCSy~K~ 56 (117)
|-++.=+-|.|.+++.++++-++.++.-+.+.+.|||.
T Consensus 38 gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~ 75 (295)
T PF06814_consen 38 GYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKS 75 (295)
T ss_pred CCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45577778999999999999999888888888888875
No 104
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=22.38 E-value=72 Score=24.57 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhcccCC
Q 035876 40 GLITVALMILACSYRKSSS 58 (117)
Q Consensus 40 gLIAvALLILaCSy~K~ss 58 (117)
.+|++.|++.+|+..+...
T Consensus 5 ~~l~l~lll~~C~~~~~~~ 23 (216)
T PF11153_consen 5 LLLLLLLLLTGCSTNPNEP 23 (216)
T ss_pred HHHHHHHHHHhhcCCCccC
Confidence 3455889999999887653
No 105
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.96 E-value=1.4e+02 Score=16.29 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=2.9
Q ss_pred HHHHHH
Q 035876 30 YLFGGL 35 (117)
Q Consensus 30 YLFgGL 35 (117)
+.+.|+
T Consensus 13 ~~~~G~ 18 (34)
T TIGR01167 13 LLLLGL 18 (34)
T ss_pred HHHHHH
Confidence 444454
No 106
>PLN00085 photosystem II reaction center protein M (PsbM); Provisional
Probab=21.73 E-value=77 Score=24.54 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 035876 38 MMGLITVALMILA 50 (117)
Q Consensus 38 MLgLIAvALLILa 50 (117)
.||+||.+|.||.
T Consensus 82 iLgfIAtaLFIlI 94 (149)
T PLN00085 82 ILGVIATALFIII 94 (149)
T ss_pred HHHHHHHHHHHHH
Confidence 5889999988877
No 107
>COG4885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.64 E-value=78 Score=27.29 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 035876 34 GLGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 34 GLA~MLgLIAvALLILaCSy~K~ 56 (117)
|+...++|||+++..||--||++
T Consensus 289 GF~~~~aL~Av~~~~~a~~rRrs 311 (312)
T COG4885 289 GFEVVFALMAVAGVALARKRRRS 311 (312)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhc
Confidence 67788899999888887766654
No 108
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=21.63 E-value=45 Score=27.96 Aligned_cols=9 Identities=56% Similarity=1.198 Sum_probs=7.4
Q ss_pred CCChhHHHH
Q 035876 25 NSPLPYLFG 33 (117)
Q Consensus 25 ~SPvPYLFg 33 (117)
|||+|||.=
T Consensus 313 hSPvp~Ll~ 321 (353)
T TIGR03363 313 HSPVPYLIE 321 (353)
T ss_pred CCcHHHHHH
Confidence 799999863
No 109
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=21.43 E-value=92 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 035876 29 PYLFGGLGLMMGLITVALMILACSYRKSSSN 59 (117)
Q Consensus 29 PYLFgGLA~MLgLIAvALLILaCSy~K~ss~ 59 (117)
-|.++|....+.|+++.++--..|++|....
T Consensus 33 ~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K 63 (226)
T PF01940_consen 33 IYGFGGWPWFLLLLAFFISSSLATKYKKERK 63 (226)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 5677888888888888888888898876543
No 110
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=21.38 E-value=31 Score=30.65 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=0.0
Q ss_pred CCccCCCC
Q 035876 19 GGLGHWNS 26 (117)
Q Consensus 19 ~~~~~W~S 26 (117)
.+++.|..
T Consensus 446 ~~~~~W~~ 453 (501)
T PF00974_consen 446 LWFSNWGE 453 (501)
T ss_dssp --------
T ss_pred cccccHHH
Confidence 57788865
No 111
>TIGR03501 gamma_C_targ gammaproteobacterial enzyme C-terminal transmembrane domain. This homology domain, largely restricted to a subset of the gamma proteobacteria that excludes the enterobacteria, is found at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. Species that have this domain at all typically have from two to fifteen proteins tagged with this domain at the C-terminus. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system.
Probab=21.33 E-value=1e+02 Score=17.33 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhcc
Q 035876 39 MGLITVALMILACSYRK 55 (117)
Q Consensus 39 LgLIAvALLILaCSy~K 55 (117)
||..++.+|.+..-+||
T Consensus 5 lGwl~LllL~~~~~rRr 21 (26)
T TIGR03501 5 LGWLSLLLLLLLGLRRR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566666655554444
No 112
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.07 E-value=85 Score=24.93 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035876 30 YLFGGLGLMMGLITVALM 47 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALL 47 (117)
|+.||+.+.+||| +.|+
T Consensus 174 f~~Gg~v~~~Gll-lGli 190 (206)
T PRK10884 174 FMYGGGVAGIGLL-LGLL 190 (206)
T ss_pred HHHchHHHHHHHH-HHHH
Confidence 6788999999988 4443
No 113
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=20.97 E-value=1.5e+02 Score=23.32 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 035876 30 YLFGGLGLMMGLITVALMILACSYRK 55 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCSy~K 55 (117)
++||-+++++|...++++...|-.||
T Consensus 302 ~~fG~~G~il~~pi~~~~~~~~~~~~ 327 (327)
T PF01594_consen 302 YLFGFIGLILAPPILAVIKAIFEEYR 327 (327)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 57888888899888888888877664
No 114
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=20.93 E-value=72 Score=25.76 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhh
Q 035876 39 MGLITVALMILACS 52 (117)
Q Consensus 39 LgLIAvALLILaCS 52 (117)
-+||++||..|+|=
T Consensus 85 t~lI~~alAfl~Cv 98 (186)
T PF06387_consen 85 TRLIAFALAFLGCV 98 (186)
T ss_pred hHHHHHHHHHHHHH
Confidence 35788888888887
No 115
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.89 E-value=90 Score=23.34 Aligned_cols=17 Identities=24% Similarity=0.340 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 035876 37 LMMGLITVALMILACSY 53 (117)
Q Consensus 37 ~MLgLIAvALLILaCSy 53 (117)
+++++|++||+...-+-
T Consensus 10 lLi~vIglAL~aFIv~d 26 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGD 26 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677888887766554
No 116
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=20.34 E-value=96 Score=25.33 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHH-hhh
Q 035876 23 HWNSPLPYLFGGLGLMMGLITVALMILA-CSY 53 (117)
Q Consensus 23 ~W~SPvPYLFgGLA~MLgLIAvALLILa-CSy 53 (117)
+|--|.+-.. ++..|||+||.|.| ||+
T Consensus 12 r~~~plk~i~----licl~~aial~IvAl~s~ 39 (201)
T KOG4671|consen 12 RWILPLKLIL----LICLLSAIALDIVALASR 39 (201)
T ss_pred EEEEechHHH----HHHHHHHHHHHHHHhccc
Confidence 3666776543 78899999999988 777
No 117
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=20.21 E-value=2.5e+02 Score=17.98 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhcccCCC
Q 035876 42 ITVALMILACSYRKSSSN 59 (117)
Q Consensus 42 IAvALLILaCSy~K~ss~ 59 (117)
|.+-|.++.|.--|-.+.
T Consensus 12 v~~lLg~~I~~~~K~ygY 29 (50)
T PF12606_consen 12 VMGLLGLSICTTLKAYGY 29 (50)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 444456677877665444
Done!