Query 035876
Match_columns 117
No_of_seqs 98 out of 107
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 91.5 0.53 1.8E-05 29.9 5.5 34 26-59 8-44 (54)
2 2l8s_A Integrin alpha-1; trans 78.2 4.4 0.00015 25.7 4.7 33 27-59 6-41 (54)
3 2jwa_A Receptor tyrosine-prote 72.2 6.9 0.00023 23.8 4.3 33 25-57 8-40 (44)
4 2k1a_A Integrin alpha-IIB; sin 70.9 7.5 0.00026 23.3 4.2 31 26-56 6-39 (42)
5 4ds7_E Spindle POLE BODY compo 66.3 2.4 8.1E-05 27.2 1.4 15 42-56 13-27 (55)
6 2knc_B Integrin beta-3; transm 63.5 7.2 0.00024 25.8 3.4 30 24-53 4-33 (79)
7 1afo_A Glycophorin A; integral 55.8 11 0.00037 22.8 2.9 23 32-54 14-36 (40)
8 2yew_B E1 envelope glycoprotei 51.2 3.5 0.00012 35.4 0.3 32 13-52 388-419 (427)
9 2vpz_C Hypothetical membrane s 46.4 22 0.00074 27.1 4.1 24 19-42 139-162 (253)
10 2k9j_B Integrin beta-3; transm 43.6 41 0.0014 19.8 4.2 27 25-51 4-30 (43)
11 2k9y_A Ephrin type-A receptor 40.3 32 0.0011 19.2 3.2 19 25-45 9-27 (41)
12 2lk9_A Bone marrow stromal ant 39.3 31 0.001 20.2 3.0 26 31-56 5-30 (35)
13 2jo1_A Phospholemman; FXYD1, N 38.6 56 0.0019 21.8 4.6 19 32-50 18-36 (72)
14 1rkl_A Dolichyl-diphosphooligo 36.7 29 0.00098 20.3 2.6 16 34-49 9-24 (36)
15 2l2t_A Receptor tyrosine-prote 35.4 73 0.0025 19.1 4.7 31 25-55 6-37 (44)
16 2lat_A Dolichyl-diphosphooligo 33.9 44 0.0015 19.6 3.1 17 33-49 8-24 (37)
17 3arc_M Photosystem II reaction 33.0 20 0.0007 21.1 1.5 12 39-50 6-17 (36)
18 3j0f_E E1 envelope glycoprotei 32.2 20 0.00067 30.9 1.9 29 19-53 404-432 (439)
19 2klu_A T-cell surface glycopro 30.6 1.2E+02 0.0041 20.1 5.2 23 33-55 12-35 (70)
20 2ks1_B Epidermal growth factor 30.3 36 0.0012 20.4 2.4 29 26-54 8-37 (44)
21 3j0c_A E1 envelope glycoprotei 27.1 21 0.00071 30.8 1.2 20 30-52 412-431 (442)
22 1cd1_A CD1, MCD1D.1; immunolog 24.4 17 0.0006 28.1 0.2 6 53-58 305-310 (315)
23 2jp3_A FXYD domain-containing 24.1 1.6E+02 0.0053 19.3 5.6 30 22-51 4-38 (67)
24 1zza_A Stannin, AG8_1; helix, 23.2 1.8E+02 0.0062 19.8 5.8 27 25-54 8-35 (90)
25 1iij_A ERBB-2 receptor protein 23.0 25 0.00084 20.4 0.6 31 25-55 4-34 (35)
26 3u7d_B Protein HEG homolog 1; 22.0 26 0.00089 19.2 0.6 14 89-102 5-18 (26)
27 2kog_A Vesicle-associated memb 20.2 98 0.0033 21.5 3.4 27 24-52 93-119 (119)
28 3arc_H Photosystem II reaction 20.1 1E+02 0.0035 20.2 3.2 22 35-56 30-51 (65)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=91.48 E-value=0.53 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH---hhhcccCCC
Q 035876 26 SPLPYLFGGLGLMMGLITVALMILA---CSYRKSSSN 59 (117)
Q Consensus 26 SPvPYLFgGLA~MLgLIAvALLILa---CSy~K~ss~ 59 (117)
+++|.-..-++++.||+-++|++++ |-+.|+...
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 4566666667777788777777666 777776654
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=78.16 E-value=4.4 Score=25.73 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH---hhhcccCCC
Q 035876 27 PLPYLFGGLGLMMGLITVALMILA---CSYRKSSSN 59 (117)
Q Consensus 27 PvPYLFgGLA~MLgLIAvALLILa---CSy~K~ss~ 59 (117)
++|.-..-++++.||+-++|++++ |-+.|+...
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 455555566777777777777666 777776553
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=72.18 E-value=6.9 Score=23.82 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=23.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 035876 25 NSPLPYLFGGLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIAvALLILaCSy~K~s 57 (117)
.||+|-.-+|..-.+.++.++|+++.+-+||..
T Consensus 8 ~~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 8 ASPLTSIISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 489998888888866666666666666666543
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=70.88 E-value=7.5 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH---hhhccc
Q 035876 26 SPLPYLFGGLGLMMGLITVALMILA---CSYRKS 56 (117)
Q Consensus 26 SPvPYLFgGLA~MLgLIAvALLILa---CSy~K~ 56 (117)
.++|.-..-++++.||+-++|++++ |-..|+
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 4567766677778888888877766 666554
No 5
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=66.26 E-value=2.4 Score=27.25 Aligned_cols=15 Identities=53% Similarity=0.722 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhccc
Q 035876 42 ITVALMILACSYRKS 56 (117)
Q Consensus 42 IAvALLILaCSy~K~ 56 (117)
=+|||++|||-+-|.
T Consensus 13 KTVAL~VlaciRMk~ 27 (55)
T 4ds7_E 13 KTVALLVLACVRMKR 27 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 379999999998665
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.51 E-value=7.2 Score=25.82 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=19.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 035876 24 WNSPLPYLFGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 24 W~SPvPYLFgGLA~MLgLIAvALLILaCSy 53 (117)
+-.|.+.+...++++.|++.+.|++|.|-+
T Consensus 4 Cp~~~n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 4 GSKGPDILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777777666554
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=55.75 E-value=11 Score=22.76 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 035876 32 FGGLGLMMGLITVALMILACSYR 54 (117)
Q Consensus 32 FgGLA~MLgLIAvALLILaCSy~ 54 (117)
..=|++|-|+|..-|+|--|.+|
T Consensus 14 lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999888775
No 8
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=51.18 E-value=3.5 Score=35.39 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCCcCCCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 035876 13 DGGVSGGGLGHWNSPLPYLFGGLGLMMGLITVALMILACS 52 (117)
Q Consensus 13 ~~~~~~~~~~~W~SPvPYLFgGLA~MLgLIAvALLILaCS 52 (117)
.+..+ +.-|.|-. |+||.+ .||+++|+||+|+
T Consensus 388 ~~~vS-~Taw~W~~----l~gG~~---~~~~i~~~i~~~v 419 (427)
T 2yew_B 388 FPSIS-TTAWQWLA----TTSGPL---TILVVAIIVVVVV 419 (427)
T ss_dssp SSCSS-HHHHHHHG----GGHHHH---HHHHHHHHHHHHH
T ss_pred cccch-hhhHHHHH----HhcCch---HHHHHHHHHHHHh
Confidence 44444 45677855 899988 4667777777765
No 9
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=46.44 E-value=22 Score=27.05 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.3
Q ss_pred CCccCCCCChhHHHHHHHHHHHHH
Q 035876 19 GGLGHWNSPLPYLFGGLGLMMGLI 42 (117)
Q Consensus 19 ~~~~~W~SPvPYLFgGLA~MLgLI 42 (117)
.++..||||.|.+|..-|+..|.-
T Consensus 139 ~~~P~W~t~lp~~Fl~sa~~sG~a 162 (253)
T 2vpz_C 139 LNRPLWNGLMAGLFPLTALVLALG 162 (253)
T ss_dssp TTSTTSCTTHHHHHHHHHHHHHHH
T ss_pred cCcccccchHHHHHHHHHHHHHHH
Confidence 347889999999998888777764
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=43.65 E-value=41 Score=19.79 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=17.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHh
Q 035876 25 NSPLPYLFGGLGLMMGLITVALMILAC 51 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIAvALLILaC 51 (117)
..|.+.+...++.+.|.+.+-|++|.+
T Consensus 4 p~~~n~~~Iv~gvi~~ivliGl~lLli 30 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLIGLAALLI 30 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHHHHHHHHH
Confidence 456677766666777666566655553
No 11
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=40.27 E-value=32 Score=19.23 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=8.3
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 035876 25 NSPLPYLFGGLGLMMGLITVA 45 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIAvA 45 (117)
++.++-+-+|.. .|++.++
T Consensus 9 ~~~~~~I~~~vv--~Gv~ll~ 27 (41)
T 2k9y_A 9 GSGNLAVIGGVA--VGVVLLL 27 (41)
T ss_dssp CCSSTHHHHHHH--HHHHHHH
T ss_pred CCceEEEEeehh--HHHHHHH
Confidence 344455544443 4443344
No 12
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=39.31 E-value=31 Score=20.22 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 035876 31 LFGGLGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 31 LFgGLA~MLgLIAvALLILaCSy~K~ 56 (117)
|..|.++.+-|+.++|.++.--|-+.
T Consensus 5 L~lg~Gvl~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 5 LLLGIGILVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred eeecccHHHHHHHHHhcchheEEeee
Confidence 45788888889999998887666443
No 13
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=38.62 E-value=56 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035876 32 FGGLGLMMGLITVALMILA 50 (117)
Q Consensus 32 FgGLA~MLgLIAvALLILa 50 (117)
.|||.+-..|.++.++||.
T Consensus 18 iGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4666655555555555555
No 14
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=36.69 E-value=29 Score=20.33 Aligned_cols=16 Identities=19% Similarity=0.733 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 035876 34 GLGLMMGLITVALMIL 49 (117)
Q Consensus 34 GLA~MLgLIAvALLIL 49 (117)
-||-.||+.++.|++|
T Consensus 9 ~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVI 24 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677788888877776
No 15
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.36 E-value=73 Score=19.11 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCChhHHHHHHHH-HHHHHHHHHHHHHhhhcc
Q 035876 25 NSPLPYLFGGLGL-MMGLITVALMILACSYRK 55 (117)
Q Consensus 25 ~SPvPYLFgGLA~-MLgLIAvALLILaCSy~K 55 (117)
.|++|-+-+|... ++++.+++|++..+-+||
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 3566666666554 444444444444444443
No 16
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=33.94 E-value=44 Score=19.60 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035876 33 GGLGLMMGLITVALMIL 49 (117)
Q Consensus 33 gGLA~MLgLIAvALLIL 49 (117)
.-||-.||+.++.|+||
T Consensus 8 ~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777888888877776
No 17
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=32.97 E-value=20 Score=21.06 Aligned_cols=12 Identities=50% Similarity=0.922 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 035876 39 MGLITVALMILA 50 (117)
Q Consensus 39 LgLIAvALLILa 50 (117)
+|+||.+|.|+.
T Consensus 6 l~fiAt~Lfi~i 17 (36)
T 3arc_M 6 LGLIATALFVLV 17 (36)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555554443
No 18
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=32.21 E-value=20 Score=30.95 Aligned_cols=29 Identities=45% Similarity=0.776 Sum_probs=18.3
Q ss_pred CCccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 035876 19 GGLGHWNSPLPYLFGGLGLMMGLITVALMILACSY 53 (117)
Q Consensus 19 ~~~~~W~SPvPYLFgGLA~MLgLIAvALLILaCSy 53 (117)
+.-|.| +=-|+||.+ .||+++|+||+|+-
T Consensus 404 ~Taw~W---~~~l~gG~~---~~~~i~~~i~~~v~ 432 (439)
T 3j0f_E 404 KTSWSW---LFALFGGAS---SLLIIGLMIFACSM 432 (439)
T ss_pred hhHHHH---HHHHhcccH---HHHHHHHHHHHHhh
Confidence 444555 234677766 56777888887764
No 19
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=30.59 E-value=1.2e+02 Score=20.10 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhcc
Q 035876 33 GGLGLMMGLITVALMILA-CSYRK 55 (117)
Q Consensus 33 gGLA~MLgLIAvALLILa-CSy~K 55 (117)
.+|+...+|+-++=+... |-+|+
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHH
Confidence 566666666666655555 55443
No 20
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=30.26 E-value=36 Score=20.38 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=10.9
Q ss_pred CChhHHHHHHHH-HHHHHHHHHHHHHhhhc
Q 035876 26 SPLPYLFGGLGL-MMGLITVALMILACSYR 54 (117)
Q Consensus 26 SPvPYLFgGLA~-MLgLIAvALLILaCSy~ 54 (117)
|++|-+-+|... ++++.+++|++..+-+|
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhh
Confidence 334443334332 33333334443333333
No 21
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=27.11 E-value=21 Score=30.79 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 035876 30 YLFGGLGLMMGLITVALMILACS 52 (117)
Q Consensus 30 YLFgGLA~MLgLIAvALLILaCS 52 (117)
-|+||.+ .||+++|+||+|+
T Consensus 412 ~l~GG~~---~~~~i~~~~~~~v 431 (442)
T 3j0c_A 412 SLLGGSA---VIIIIGLVLATIV 431 (442)
T ss_dssp TTSSHHH---HHHHHHHHHHHHH
T ss_pred HHhcccH---HHHHHHHHHHHHH
Confidence 3677776 4455566655553
No 22
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=24.43 E-value=17 Score=28.10 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=0.0
Q ss_pred hcccCC
Q 035876 53 YRKSSS 58 (117)
Q Consensus 53 y~K~ss 58 (117)
+||..+
T Consensus 305 ~~~~~~ 310 (315)
T 1cd1_A 305 WRRRSA 310 (315)
T ss_dssp ------
T ss_pred eehhcC
Confidence 355443
No 23
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.15 E-value=1.6e+02 Score=19.32 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=19.7
Q ss_pred cCCCCChhH-----HHHHHHHHHHHHHHHHHHHHh
Q 035876 22 GHWNSPLPY-----LFGGLGLMMGLITVALMILAC 51 (117)
Q Consensus 22 ~~W~SPvPY-----LFgGLA~MLgLIAvALLILaC 51 (117)
..|.+|.=| =.|||.+-..|.++.++||.+
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHHHc
Confidence 456677766 457777666666666666663
No 24
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=23.25 E-value=1.8e+02 Score=19.78 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=13.4
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHhhhc
Q 035876 25 NSPLPYLFGGLGLMMGLITVA-LMILACSYR 54 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIAvA-LLILaCSy~ 54 (117)
|||+- |-..+..-|||+| |-+|.|-.|
T Consensus 8 hsptt---gvvtv~viliavaalg~li~gcw 35 (90)
T 1zza_A 8 HSPTT---GVVTVIVILIAIAALGALILGCW 35 (90)
T ss_dssp TTTHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCc---ceEEehhHHHHHHHHHHHHHHHH
Confidence 56654 3334455567665 334444444
No 25
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=22.97 E-value=25 Score=20.45 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=18.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 035876 25 NSPLPYLFGGLGLMMGLITVALMILACSYRK 55 (117)
Q Consensus 25 ~SPvPYLFgGLA~MLgLIAvALLILaCSy~K 55 (117)
.||+|-+-.|..-.|.++-++|.+..+=+||
T Consensus 4 ~s~~~sIaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 4 ASPVTFIIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHhheEEeec
Confidence 4677777777666555555555555555554
No 26
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=22.01 E-value=26 Score=19.20 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=11.8
Q ss_pred EEecCCCCCceeec
Q 035876 89 VIMAGDDNPSYLAK 102 (117)
Q Consensus 89 ViMaGd~~PtflA~ 102 (117)
.|.||.-+|+||..
T Consensus 5 ciypgqynpsfisd 18 (26)
T 3u7d_B 5 CIFPGQYNPSFISD 18 (26)
T ss_pred ccccCccCcccccC
Confidence 47899999999864
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.20 E-value=98 Score=21.51 Aligned_cols=27 Identities=11% Similarity=0.312 Sum_probs=14.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 035876 24 WNSPLPYLFGGLGLMMGLITVALMILACS 52 (117)
Q Consensus 24 W~SPvPYLFgGLA~MLgLIAvALLILaCS 52 (117)
|+-=-++++.|+.+++ |-+..++.+||
T Consensus 93 wkn~K~~iii~~iv~i--ii~iIi~~~c~ 119 (119)
T 2kog_A 93 WKNLKMMIILGVICAI--ILIIIIVYFST 119 (119)
T ss_dssp CHHHHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH--HHHHhhhheeC
Confidence 5555566665555443 33334455675
No 28
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=20.06 E-value=1e+02 Score=20.15 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 035876 35 LGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 35 LA~MLgLIAvALLILaCSy~K~ 56 (117)
+++.|+|+++.|+|+.=-|..+
T Consensus 30 Mgv~m~Lf~vFl~iiLeIYNsS 51 (65)
T 3arc_H 30 MAVFMGLFLVFLLIILEIYNST 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 4677888999999887666443
Done!