Query 035876
Match_columns 117
No_of_seqs 98 out of 107
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035876.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035876hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 36.2 7.9 0.00058 21.5 1.5 12 39-50 6-17 (36)
2 d2axth1 f.23.33.1 (H:2-65) Pho 26.0 31 0.0023 21.0 3.2 22 35-56 30-51 (64)
3 d2heqa1 b.34.20.1 (A:1-71) Unc 22.6 15 0.0011 22.6 1.2 15 91-105 1-15 (71)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 15.2 1.1E+02 0.0083 18.3 4.3 24 34-57 34-57 (100)
5 d1ijda_ f.3.1.1 (A:) Light-har 14.7 88 0.0064 17.7 3.3 20 28-47 16-35 (46)
6 d1ppjd2 f.23.11.1 (D:196-241) 12.5 91 0.0066 17.3 2.9 17 33-49 9-25 (46)
7 d1nkza_ f.3.1.1 (A:) Light-har 12.4 1.1E+02 0.0079 17.8 3.3 20 28-47 16-35 (53)
8 d1o5ha_ a.191.1.1 (A:) Hypothe 10.4 1.1E+02 0.0078 21.1 3.3 22 33-54 24-45 (200)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.0 1.9E+02 0.014 17.5 4.4 22 34-55 40-61 (107)
10 d1kf6a1 a.7.3.1 (A:443-576) Fu 8.9 2.3E+02 0.017 17.7 5.4 59 40-106 68-128 (134)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=36.20 E-value=7.9 Score=21.45 Aligned_cols=12 Identities=50% Similarity=0.922 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 035876 39 MGLITVALMILA 50 (117)
Q Consensus 39 LgLIAvALLILa 50 (117)
||+||-||.||.
T Consensus 6 Lg~iAt~LFilv 17 (36)
T d2axtm1 6 LGLIATALFVLV 17 (36)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666655
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.96 E-value=31 Score=21.00 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 035876 35 LGLMMGLITVALMILACSYRKS 56 (117)
Q Consensus 35 LA~MLgLIAvALLILaCSy~K~ 56 (117)
+++.|+|+++.|+|+.=-|..+
T Consensus 30 Mgv~m~Lf~vfl~iiLeiYNss 51 (64)
T d2axth1 30 MAVFMGLFLVFLLIILEIYNST 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 5677899999999988766543
No 3
>d2heqa1 b.34.20.1 (A:1-71) Uncharacterized protein YorP {Bacillus subtilis [TaxId: 1423]}
Probab=22.60 E-value=15 Score=22.57 Aligned_cols=15 Identities=53% Similarity=0.877 Sum_probs=13.0
Q ss_pred ecCCCCCceeecccc
Q 035876 91 MAGDDNPSYLAKPVS 105 (117)
Q Consensus 91 MaGd~~PtflA~P~~ 105 (117)
||||.-|+|-.-|+.
T Consensus 1 magdplpkywsypvg 15 (71)
T d2heqa1 1 MAGDPLPKYWSYPVG 15 (71)
T ss_dssp CCCCCCCSSCCSCTT
T ss_pred CCCCCCccccccccc
Confidence 899999999888753
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.25 E-value=1.1e+02 Score=18.33 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 035876 34 GLGLMMGLITVALMILACSYRKSS 57 (117)
Q Consensus 34 GLA~MLgLIAvALLILaCSy~K~s 57 (117)
.++.+++++...+++.+|.++|.+
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 355555556666666666655543
No 5
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=14.69 E-value=88 Score=17.71 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 035876 28 LPYLFGGLGLMMGLITVALM 47 (117)
Q Consensus 28 vPYLFgGLA~MLgLIAvALL 47 (117)
+|-++|..|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (46)
T d1ijda_ 16 LPLMLGAVAITALLVHAAVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 46666666665555555544
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.53 E-value=91 Score=17.27 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035876 33 GGLGLMMGLITVALMIL 49 (117)
Q Consensus 33 gGLA~MLgLIAvALLIL 49 (117)
.|+-+|+.|+.++.+..
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36667777665555443
No 7
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=12.39 E-value=1.1e+02 Score=17.77 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 035876 28 LPYLFGGLGLMMGLITVALM 47 (117)
Q Consensus 28 vPYLFgGLA~MLgLIAvALL 47 (117)
+|-++|..|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (53)
T d1nkza_ 16 IPALLGSVTVIAILVHLAIL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 46666666665555555554
No 8
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=10.44 E-value=1.1e+02 Score=21.05 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 035876 33 GGLGLMMGLITVALMILACSYR 54 (117)
Q Consensus 33 gGLA~MLgLIAvALLILaCSy~ 54 (117)
|+.++..|-++.||..++|-+-
T Consensus 24 GsaaAl~galg~aL~~MVa~lT 45 (200)
T d1o5ha_ 24 GAVGSVVGAMACALAEMVANFT 45 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5688899999999999999873
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.96 E-value=1.9e+02 Score=17.54 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 035876 34 GLGLMMGLITVALMILACSYRK 55 (117)
Q Consensus 34 GLA~MLgLIAvALLILaCSy~K 55 (117)
.++.+++++...+++..+.+++
T Consensus 40 ~i~~~I~~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 40 YIITAVTIFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 3444444455556666655544
No 10
>d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli [TaxId: 562]}
Probab=8.90 E-value=2.3e+02 Score=17.73 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhcc-cCCC-CCCCCccccccCCCCccccccccCCCeeEEEecCCCCCceeeccccc
Q 035876 40 GLITVALMILACSYRK-SSSN-SATDHADEDKSAGHDKQVEMQTEMEPKIVVIMAGDDNPSYLAKPVSC 106 (117)
Q Consensus 40 gLIAvALLILaCSy~K-~ss~-s~~~~~d~ek~~~~~~~~~~~~~~~~~v~ViMaGd~~PtflA~P~~~ 106 (117)
-+|-+|.+|+.+...+ -|+. .-+ .|...+. ....++....+|..-+|..|++--.|+..
T Consensus 68 n~l~~a~~i~~aAl~R~ESRG~H~R--~D~~~p~------~dD~~wl~~t~~~~~~~g~~~~~~~pV~~ 128 (134)
T d1kf6a1 68 HGLNVAECMAHSAMARKESRGAHQR--LDEGCTE------RDDVNFLKHTLAFRDADGTTRLEYSDVKI 128 (134)
T ss_dssp HHHHHHHHHHHHHHHCCSCBTTBCB--CSTTCSS------CCTTTCCEEEEEEECTTSCEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHccccccccccc--ccCCCCC------CCchhhCeEEEEEECCCCCEEEEeccccc
Confidence 3466777777766644 3332 111 1211221 11224556667777788888877777643
Done!