Query 035877
Match_columns 162
No_of_seqs 113 out of 1377
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10189 MATE family multidrug 99.9 1.1E-26 2.5E-31 189.8 14.9 148 2-149 298-468 (478)
2 COG0534 NorM Na+-driven multid 99.9 8.7E-26 1.9E-30 183.5 15.7 151 1-152 279-452 (455)
3 PRK01766 multidrug efflux prot 99.9 7.7E-24 1.7E-28 171.9 15.7 153 2-154 278-453 (456)
4 PRK00187 multidrug efflux prot 99.9 1.3E-23 2.8E-28 171.2 14.9 145 2-146 275-447 (464)
5 PRK09575 vmrA multidrug efflux 99.9 1.1E-21 2.4E-26 159.4 14.5 138 2-142 274-435 (453)
6 PRK10367 DNA-damage-inducible 99.9 8.9E-21 1.9E-25 153.8 13.2 139 1-147 270-434 (441)
7 PRK10367 DNA-damage-inducible 99.9 3.1E-20 6.7E-25 150.6 16.1 139 3-142 50-211 (441)
8 PRK10189 MATE family multidrug 99.8 8E-20 1.7E-24 149.6 16.1 140 2-142 68-236 (478)
9 COG0534 NorM Na+-driven multid 99.8 7.8E-20 1.7E-24 148.8 15.6 143 2-145 56-223 (455)
10 PRK00187 multidrug efflux prot 99.8 1E-19 2.3E-24 148.3 14.6 140 2-143 49-215 (464)
11 PRK09575 vmrA multidrug efflux 99.8 5.4E-19 1.2E-23 143.7 15.4 140 3-143 53-215 (453)
12 PRK01766 multidrug efflux prot 99.8 1.5E-17 3.3E-22 135.1 15.6 140 4-144 53-219 (456)
13 TIGR00797 matE putative efflux 99.7 4E-15 8.6E-20 116.3 17.6 139 3-142 33-196 (342)
14 PF01554 MatE: MatE; InterPro 99.7 1.5E-17 3.3E-22 117.0 3.2 108 2-109 32-162 (162)
15 KOG1347 Uncharacterized membra 99.7 3E-18 6.6E-23 139.6 -1.0 154 2-155 288-464 (473)
16 TIGR02900 spore_V_B stage V sp 99.6 7.9E-14 1.7E-18 113.8 16.4 136 7-143 280-434 (488)
17 TIGR01695 mviN integral membra 99.6 1.5E-13 3.3E-18 112.6 14.6 136 5-143 265-428 (502)
18 TIGR02900 spore_V_B stage V sp 99.2 4E-10 8.7E-15 92.0 13.8 137 6-143 43-204 (488)
19 PRK15099 O-antigen translocase 99.2 7.3E-10 1.6E-14 89.2 13.3 123 15-142 55-196 (416)
20 PF03023 MVIN: MviN-like prote 99.0 2E-08 4.3E-13 82.0 16.1 135 6-143 241-403 (451)
21 PRK15099 O-antigen translocase 98.9 3.2E-08 6.8E-13 79.7 13.7 133 3-141 256-410 (416)
22 COG0728 MviN Uncharacterized m 98.9 1.3E-07 2.9E-12 77.9 15.3 127 14-143 284-437 (518)
23 KOG1347 Uncharacterized membra 98.8 5E-08 1.1E-12 80.1 11.8 132 11-144 77-231 (473)
24 TIGR01695 mviN integral membra 98.8 1.2E-07 2.5E-12 77.9 13.0 119 22-143 62-207 (502)
25 TIGR00797 matE putative efflux 98.7 7.5E-08 1.6E-12 75.2 7.6 74 3-76 256-331 (342)
26 COG2244 RfbX Membrane protein 98.5 6E-06 1.3E-10 67.6 15.6 120 3-125 254-394 (480)
27 PRK10459 colanic acid exporter 98.5 1.4E-05 2.9E-10 65.8 15.6 114 22-140 270-402 (492)
28 PF03023 MVIN: MviN-like prote 98.4 1.9E-05 4.2E-10 64.6 15.7 136 5-144 18-183 (451)
29 PF14667 Polysacc_synt_C: Poly 97.7 0.00035 7.7E-09 47.9 8.6 64 77-143 17-80 (146)
30 PRK10459 colanic acid exporter 96.9 0.037 8.1E-07 45.5 13.1 97 38-137 75-188 (492)
31 PF13440 Polysacc_synt_3: Poly 96.8 0.12 2.7E-06 38.0 15.5 106 29-140 49-170 (251)
32 COG0728 MviN Uncharacterized m 96.7 0.11 2.3E-06 43.6 13.8 125 18-143 66-216 (518)
33 PF01943 Polysacc_synt: Polysa 96.6 0.15 3.3E-06 37.8 13.5 64 77-142 127-190 (273)
34 PF04506 Rft-1: Rft protein; 94.6 1.2 2.5E-05 37.9 12.3 109 33-142 338-469 (549)
35 COG2244 RfbX Membrane protein 92.7 4.4 9.5E-05 33.2 12.5 85 7-98 51-156 (480)
36 PF04505 Dispanin: Interferon- 88.7 4.2 9E-05 25.3 6.9 41 15-55 32-75 (82)
37 COG4267 Predicted membrane pro 86.8 16 0.00034 29.9 11.4 124 15-142 77-210 (467)
38 KOG2864 Nuclear division RFT1 78.3 33 0.00071 28.8 9.4 119 22-142 304-448 (530)
39 PRK09546 zntB zinc transporter 65.5 30 0.00065 27.1 6.6 50 93-145 266-323 (324)
40 PF01102 Glycophorin_A: Glycop 62.2 16 0.00036 24.6 3.9 29 118-146 66-94 (122)
41 TIGR00383 corA magnesium Mg(2+ 58.7 56 0.0012 25.3 7.0 44 101-145 266-317 (318)
42 TIGR00822 EII-Sor PTS system, 54.6 98 0.0021 23.9 13.2 101 22-123 122-228 (265)
43 PRK15065 PTS system mannose-sp 45.9 1.4E+02 0.003 23.0 13.1 101 22-123 122-229 (262)
44 COG0170 SEC59 Dolichol kinase 44.9 33 0.00071 25.5 3.5 49 11-59 118-168 (216)
45 COG0598 CorA Mg2+ and Co2+ tra 44.6 75 0.0016 24.9 5.7 43 101-145 270-321 (322)
46 PF03916 NrfD: Polysulphide re 40.8 1.5E+02 0.0033 23.0 6.8 42 10-51 16-61 (313)
47 PF01384 PHO4: Phosphate trans 38.6 2E+02 0.0043 22.8 7.5 89 22-110 184-325 (326)
48 TIGR03141 cytochro_ccmD heme e 35.9 75 0.0016 17.2 4.1 15 121-135 8-22 (45)
49 PF02687 FtsX: FtsX-like perme 33.6 1.2E+02 0.0027 19.0 4.7 48 22-69 30-77 (121)
50 PRK00523 hypothetical protein; 33.2 43 0.00093 20.3 2.1 24 119-142 4-27 (72)
51 PF07849 DUF1641: Protein of u 32.7 38 0.00083 18.1 1.7 17 71-87 21-41 (42)
52 COG3071 HemY Uncharacterized e 32.6 39 0.00085 27.5 2.4 71 6-76 3-73 (400)
53 PF04995 CcmD: Heme exporter p 32.6 88 0.0019 16.9 3.9 16 121-136 7-22 (46)
54 PF09600 Cyd_oper_YbgE: Cyd op 30.9 1.3E+02 0.0028 18.7 4.0 42 46-87 5-53 (82)
55 PF05975 EcsB: Bacterial ABC t 30.0 3E+02 0.0064 22.2 13.0 37 31-67 88-124 (386)
56 PRK09757 PTS system N-acetylga 29.6 2.6E+02 0.0057 21.5 13.4 68 22-89 123-196 (267)
57 PRK10739 putative antibiotic t 29.3 2.3E+02 0.005 20.7 8.1 62 10-76 10-72 (197)
58 PRK11085 magnesium/nickel/coba 27.8 3.1E+02 0.0066 21.7 7.5 43 101-145 264-315 (316)
59 PF01148 CTP_transf_1: Cytidyl 24.5 1.2E+02 0.0027 22.3 3.8 24 8-31 131-156 (259)
60 PF03030 H_PPase: Inorganic H+ 23.7 5.2E+02 0.011 23.0 8.4 45 77-126 373-417 (682)
61 PF03601 Cons_hypoth698: Conse 23.7 3.6E+02 0.0079 21.1 9.3 83 50-132 88-189 (305)
62 PRK14992 tetrathionate reducta 22.7 3.7E+02 0.0081 21.5 6.2 43 5-50 14-59 (335)
63 COG2332 CcmE Cytochrome c-type 20.9 1.7E+02 0.0036 20.6 3.5 37 35-71 4-40 (153)
64 PF07074 TRAP-gamma: Transloco 20.4 3.4E+02 0.0073 19.5 5.7 36 102-138 29-64 (170)
No 1
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.95 E-value=1.1e-26 Score=189.76 Aligned_cols=148 Identities=15% Similarity=0.257 Sum_probs=141.4
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--- 76 (162)
+++.+++.+.+++..|+++| +++||++||||+|++|+..+.+..+++.++.+.+++.+++++++..+|++|+|+.
T Consensus 298 ~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~ 377 (478)
T PRK10189 298 FIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVV 377 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 56789999999999999999 9999999999999999999999999999999999999999999999999999988
Q ss_pred ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 035877 77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138 (162)
Q Consensus 77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~ 138 (162)
+..+.+||.||++.++++++.++|++.+|+.|++.+..++|+.|+|++..+++.+++++..+
T Consensus 378 ~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~ 457 (478)
T PRK10189 378 KILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYW 457 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHhcCchhHH
Q 035877 139 IVLRRKFTNVD 149 (162)
Q Consensus 139 ~~~~~~~~~~~ 149 (162)
++++++|++..
T Consensus 458 r~~~~~W~~~~ 468 (478)
T PRK10189 458 RMVSGRWLWKY 468 (478)
T ss_pred HHHcCccccCC
Confidence 99999998843
No 2
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=8.7e-26 Score=183.54 Aligned_cols=151 Identities=30% Similarity=0.489 Sum_probs=144.0
Q ss_pred CEeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH--
Q 035877 1 MIFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR-- 76 (162)
Q Consensus 1 ~~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-- 76 (162)
|+++.++.++.+++++|+++| +++||++||||+|++|+..+.+..++...+.+..++.+++++++.++|++|+|+.
T Consensus 279 ~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~ 358 (455)
T COG0534 279 YGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIAL 358 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 467889999999999999999 9999999999999999999999999999999999999999999999999999988
Q ss_pred -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877 77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF 137 (162)
Q Consensus 77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~ 137 (162)
+..+++||.||++.+++.++.++|++.+|+.|++.+.. +|..|+|+++..++.++++...
T Consensus 359 ~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~ 437 (455)
T COG0534 359 AVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLL 437 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999877 9999999999999999999999
Q ss_pred HHHHhcCchhHHHHh
Q 035877 138 LIVLRRKFTNVDIAV 152 (162)
Q Consensus 138 ~~~~~~~~~~~~~~~ 152 (162)
+++++.+|++...++
T Consensus 438 ~~~~~~~~~~~~~~~ 452 (455)
T COG0534 438 LRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHHHhhhhhhhhhc
Confidence 999999998876544
No 3
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=7.7e-24 Score=171.89 Aligned_cols=153 Identities=25% Similarity=0.389 Sum_probs=141.2
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--- 76 (162)
+++.++.++.+.++.|++.| +.+||++|+||++++|+..+.++.++..++.+.+++++.+++++.++|++|+|+.
T Consensus 278 ~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~ 357 (456)
T PRK01766 278 QIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALA 357 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45678889999999999999 9999999999999999999999999999999999999999999999999999976
Q ss_pred ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 035877 77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138 (162)
Q Consensus 77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~ 138 (162)
+..+++||.||++.++..++.+.|++++|..|++.+.+++|+.|+|+++.+++.+.+++..+
T Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~ 437 (456)
T PRK01766 358 SHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLL 437 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHhcCchhHHHHhhh
Q 035877 139 IVLRRKFTNVDIAVSR 154 (162)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (162)
++.+.+|+...+..+|
T Consensus 438 ~~~~~~~~~~~~~~~~ 453 (456)
T PRK01766 438 RLRKLQRQPSAIILQR 453 (456)
T ss_pred HHHHHHHHHhHHHhhh
Confidence 9888887765444443
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=1.3e-23 Score=171.25 Aligned_cols=145 Identities=28% Similarity=0.406 Sum_probs=132.0
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--ch---h
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD--SQ---E 74 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~ 74 (162)
+++.++..+.+.+..|++.| +++||++|+||+|++++..+.++.++..++++.+++.+++++++.++|++ |+ |
T Consensus 275 ~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~ 354 (464)
T PRK00187 275 QIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAE 354 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHH
Confidence 46778999999999999999 99999999999999999999999999999999999999999999999974 44 4
Q ss_pred HH---------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q 035877 75 IR---------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQA 133 (162)
Q Consensus 75 v~---------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~ 133 (162)
+. ++.+++||.||++.+++.++.++|++++|++|++.+.+++|+.|+|+++.+++.+..
T Consensus 355 v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~ 434 (464)
T PRK00187 355 IVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAA 434 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHH
Confidence 44 678999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhcCch
Q 035877 134 SSLFLIVLRRKFT 146 (162)
Q Consensus 134 ~~~~~~~~~~~~~ 146 (162)
+....+++.++|+
T Consensus 435 ~~~~~~~~~~~~~ 447 (464)
T PRK00187 435 VALTLAFEWKTAR 447 (464)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766554443
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=1.1e-21 Score=159.41 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=124.7
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-chhHH--
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD-SQEIR-- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~v~-- 76 (162)
+++.++..+.+++..|+++| +++||++|+||+||+|+..+.++.+++..+++.+++++++++++..+|++ |+|+.
T Consensus 274 ~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~ 353 (453)
T PRK09575 274 AIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAE 353 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHH
Confidence 45678899999999999999 99999999999999999999999999999999999999999999999995 78876
Q ss_pred -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877 77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF 137 (162)
Q Consensus 77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~ 137 (162)
+..+++||.||++.++..++.+ +++++|+.|++... +|+.|+|+++.+++.+..+...
T Consensus 354 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~ 430 (453)
T PRK09575 354 TIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVA 430 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHH
Confidence 6788999999999999999877 47899999888643 7999999999999999988877
Q ss_pred HHHHh
Q 035877 138 LIVLR 142 (162)
Q Consensus 138 ~~~~~ 142 (162)
.++++
T Consensus 431 ~~~~~ 435 (453)
T PRK09575 431 PMLWR 435 (453)
T ss_pred HHHHH
Confidence 66554
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.85 E-value=8.9e-21 Score=153.76 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=118.6
Q ss_pred CEeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH--
Q 035877 1 MIFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR-- 76 (162)
Q Consensus 1 ~~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-- 76 (162)
++++.++..+.+++.+|+++| +++||++|+||+|++|+..+.++.++...+.+.+++.+.+++++..+|++|+|++
T Consensus 270 ~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~ 349 (441)
T PRK10367 270 NAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQL 349 (441)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 357789999999999999999 9999999999999999999999999999999999999999999999999999988
Q ss_pred -------------------HHhhHHhhcC---chhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Q 035877 77 -------------------NFAGVARGCG---WQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQAS 134 (162)
Q Consensus 77 -------------------~~~~~l~g~g---~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~ 134 (162)
++.++++|.+ |++.++..++++.|++.++. +++|+.|+|++..+++.++++
T Consensus 350 ~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i 422 (441)
T PRK10367 350 ADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGL 422 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHH
Confidence 1133444444 69999999999987533322 357999999999999999999
Q ss_pred HHHHHHHhcCchh
Q 035877 135 SLFLIVLRRKFTN 147 (162)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (162)
.+..+++++ |++
T Consensus 423 ~~~~~~~~~-~~~ 434 (441)
T PRK10367 423 SLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHHH-Hhc
Confidence 888765544 744
No 7
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.85 E-value=3.1e-20 Score=150.60 Aligned_cols=139 Identities=15% Similarity=0.125 Sum_probs=127.7
Q ss_pred eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----
Q 035877 3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---- 76 (162)
Q Consensus 3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---- 76 (162)
++.++..+.+.+..+++.+ +++||++|+||+|++++..++++.+++..+++..++...+.+++..++++|+|+.
T Consensus 50 l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~ 129 (441)
T PRK10367 50 VGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQAR 129 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567788888888999998 9999999999999999999999999999999999888999999999999999987
Q ss_pred -----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH
Q 035877 77 -----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLI 139 (162)
Q Consensus 77 -----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~ 139 (162)
++.+++||.||++.+++.++++. ++++++++++.+.+++|+.|+|+++.+++.+..++..++
T Consensus 130 ~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~ 208 (441)
T PRK10367 130 RFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLM 208 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999996 889999999999889999999999999999998877666
Q ss_pred HHh
Q 035877 140 VLR 142 (162)
Q Consensus 140 ~~~ 142 (162)
+.+
T Consensus 209 ~~~ 211 (441)
T PRK10367 209 VRK 211 (441)
T ss_pred HHH
Confidence 654
No 8
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=8e-20 Score=149.56 Aligned_cols=140 Identities=16% Similarity=0.240 Sum_probs=127.0
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cchhHH-
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA--DSQEIR- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~v~- 76 (162)
+++.++.++.+.+..|++++ +++||++|+||+|++++..++++.+++.++++.+++.+.+++++..+|+ +|+|+.
T Consensus 68 ~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~ 147 (478)
T PRK10189 68 GLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKA 147 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHH
Confidence 46778888999999999999 9999999999999999999999999999999999999999999999995 688877
Q ss_pred --------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHH
Q 035877 77 --------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQ 132 (162)
Q Consensus 77 --------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~ 132 (162)
++++++||.||++.++..++.+ +++++++++.+.+. +++|+.|+|+++.+++.+.
T Consensus 148 ~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~ 226 (478)
T PRK10189 148 LALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIG 226 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHH
Confidence 6889999999999999999987 48999999999875 4899999999999999999
Q ss_pred HHHHHHHHHh
Q 035877 133 ASSLFLIVLR 142 (162)
Q Consensus 133 ~~~~~~~~~~ 142 (162)
.++..+++.+
T Consensus 227 ~~~~~~~~~~ 236 (478)
T PRK10189 227 AVAIIWVLMI 236 (478)
T ss_pred HHHHHHHHHh
Confidence 8877665543
No 9
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.84 E-value=7.8e-20 Score=148.75 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=133.9
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--- 76 (162)
++++++..+.+.+..|++.| +++||++|+||++++++...+++++++.++++..++.+.+++++..++++++|+.
T Consensus 56 ~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a 135 (455)
T COG0534 56 GLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELA 135 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHH
Confidence 45678889999999999999 9999999999999999999999999999999999999999999999999988766
Q ss_pred ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh-hC-CchhHHHHHHHHHHHHHHHHH
Q 035877 77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK-LN-LHAKGLWIGLICGLAAQASSL 136 (162)
Q Consensus 77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~-~~-~g~~G~~~~~~~~~~~~~~~~ 136 (162)
++.+++|+.||+|.+|+++++++ ++|+.+++++.+. ++ ||+.|..+|+.+++.+..+..
T Consensus 136 ~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~ 214 (455)
T COG0534 136 AEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLL 214 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999996 9999999999998 57 999999999999999999999
Q ss_pred HHHHHhcCc
Q 035877 137 FLIVLRRKF 145 (162)
Q Consensus 137 ~~~~~~~~~ 145 (162)
..++.+.+.
T Consensus 215 ~~~~~~~~~ 223 (455)
T COG0534 215 LIYLLRKKR 223 (455)
T ss_pred HHHHHhcch
Confidence 888877663
No 10
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.83 E-value=1e-19 Score=148.33 Aligned_cols=140 Identities=21% Similarity=0.147 Sum_probs=123.9
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--- 76 (162)
+++.++..+.+.+..|++.| +++||++|+||+|++++..++++.+++.++++..++.+ +.+++..+|++|+|+.
T Consensus 49 ~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~ 127 (464)
T PRK00187 49 GLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAA 127 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHH
Confidence 35567888888999999999 99999999999999999999999999999998887765 6789999999999988
Q ss_pred ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHHHH
Q 035877 77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQAS 134 (162)
Q Consensus 77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~~~ 134 (162)
.+++++||.||++.+++.++++. +++++++|++.+. +++|+.|+++++.+++....+
T Consensus 128 ~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~ 206 (464)
T PRK00187 128 MQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMAL 206 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHH
Confidence 78999999999999999999996 7799999998875 369999999999999988887
Q ss_pred HHHHHHHhc
Q 035877 135 SLFLIVLRR 143 (162)
Q Consensus 135 ~~~~~~~~~ 143 (162)
.+..+++++
T Consensus 207 ~~~~~~~~~ 215 (464)
T PRK00187 207 ALALYIRRH 215 (464)
T ss_pred HHHHHHHhc
Confidence 766666543
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.82 E-value=5.4e-19 Score=143.74 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=126.8
Q ss_pred eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----
Q 035877 3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---- 76 (162)
Q Consensus 3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---- 76 (162)
++.++..+.+.+..+++.+ +++||++|+||+|++++..++++.+++.++++.+++.+.+.+++..+|+.|+|+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~ 132 (453)
T PRK09575 53 MAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELAL 132 (453)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 3456777777788888887 9999999999999999999999999999999999999999999999999888776
Q ss_pred -----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH
Q 035877 77 -----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLI 139 (162)
Q Consensus 77 -----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~ 139 (162)
.+.+++|+.||++.+++.++.+. ++++++++++.+.+++|+.|+|+++.+++.+..++..++
T Consensus 133 ~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~ 211 (453)
T PRK09575 133 QYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGY 211 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999995 899999999999889999999999999999999887776
Q ss_pred HHhc
Q 035877 140 VLRR 143 (162)
Q Consensus 140 ~~~~ 143 (162)
++++
T Consensus 212 ~~~~ 215 (453)
T PRK09575 212 FFSS 215 (453)
T ss_pred HHCC
Confidence 6544
No 12
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.77 E-value=1.5e-17 Score=135.12 Aligned_cols=140 Identities=18% Similarity=0.215 Sum_probs=124.4
Q ss_pred eehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH-----
Q 035877 4 SVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR----- 76 (162)
Q Consensus 4 ~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~----- 76 (162)
+.++..+.+.+..|++.+ +.+||++|+||+|++++..++++.+++..+++.+++.+.+++++..+|+.|+|+.
T Consensus 53 ~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 132 (456)
T PRK01766 53 GTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVG 132 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHH
Confidence 345566677788888888 9999999999999999999999999999999999999999999999999998865
Q ss_pred ----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHHHHHH
Q 035877 77 ----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQASSL 136 (162)
Q Consensus 77 ----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~~~~~ 136 (162)
++.+++||.||++.+++.++++. ++++++++++.+. +++|+.|+++++.+++.+..++.
T Consensus 133 yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~ 211 (456)
T PRK01766 133 YLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAM 211 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHH
Confidence 68899999999999999999996 7899999998864 57899999999999999999988
Q ss_pred HHHHHhcC
Q 035877 137 FLIVLRRK 144 (162)
Q Consensus 137 ~~~~~~~~ 144 (162)
.++.++.+
T Consensus 212 ~~~~~~~~ 219 (456)
T PRK01766 212 LIYIKRAR 219 (456)
T ss_pred HHHHHhCh
Confidence 77765543
No 13
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.69 E-value=4e-15 Score=116.25 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=124.1
Q ss_pred eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----
Q 035877 3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---- 76 (162)
Q Consensus 3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---- 76 (162)
++.++..+...+..|++++ +.+++++|++|+|++++..+.++.+.+..+++++++.+++++++..+++.|+|..
T Consensus 33 ~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 112 (342)
T TIGR00797 33 LGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQ 112 (342)
T ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHH
Confidence 4567788888899999999 9999999999999999999999999999999999999999999999998666543
Q ss_pred -----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHH-hhC-CchhHHHHHHHHHHHHHHHHHH
Q 035877 77 -----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-KLN-LHAKGLWIGLICGLAAQASSLF 137 (162)
Q Consensus 77 -----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~-~~~-~g~~G~~~~~~~~~~~~~~~~~ 137 (162)
+..+++|+.||++.+++.++.+. ++++++++.+.+ ..+ +|..|+++++.+++.+..++..
T Consensus 113 ~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~ 191 (342)
T TIGR00797 113 DYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLL 191 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999986 788899888887 567 8899999999999999988877
Q ss_pred HHHHh
Q 035877 138 LIVLR 142 (162)
Q Consensus 138 ~~~~~ 142 (162)
++.++
T Consensus 192 ~~~~~ 196 (342)
T TIGR00797 192 YYIKK 196 (342)
T ss_pred HHHHh
Confidence 66654
No 14
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.68 E-value=1.5e-17 Score=117.05 Aligned_cols=108 Identities=28% Similarity=0.541 Sum_probs=102.1
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--- 76 (162)
+++.++..+...+..|+++| +.+||++|+||+|++++..++++.+++.++++.+++.+++++++..+|++|+|+.
T Consensus 32 ~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 111 (162)
T PF01554_consen 32 GIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIA 111 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHH
T ss_pred HHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHh
Confidence 45678888999999999999 9999999999999999999999999999999999999999999999999998766
Q ss_pred ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHH
Q 035877 77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALL 109 (162)
Q Consensus 77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~ 109 (162)
+..+++||.||++.+++.++.+.|++++|++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 112 RQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 788999999999999999999999999999875
No 15
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.68 E-value=3e-18 Score=139.64 Aligned_cols=154 Identities=31% Similarity=0.540 Sum_probs=143.7
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--- 76 (162)
+|+.+.....++.+.|++.| +.+++.+|+||++++|.....++..++..+...+...+..++.+..+|++|+|+.
T Consensus 288 sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~v 367 (473)
T KOG1347|consen 288 SICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLV 367 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56778889999999999999 9999999999999999999999999999999999999999999999999999987
Q ss_pred ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 035877 77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138 (162)
Q Consensus 77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~ 138 (162)
+..|..||.|+++...++++.+++++++|...++.+..++|..|+|.++..+..+....+..
T Consensus 368 a~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~ 447 (473)
T KOG1347|consen 368 ADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAI 447 (473)
T ss_pred HHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHhcCchhHHHHhhhh
Q 035877 139 IVLRRKFTNVDIAVSRE 155 (162)
Q Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (162)
...+.||+++..+....
T Consensus 448 ~~~~tdW~~~~~~a~~~ 464 (473)
T KOG1347|consen 448 VTARTDWKNQAEKAFAR 464 (473)
T ss_pred heeeccHHHHHHHHHHH
Confidence 88999999987765443
No 16
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.59 E-value=7.9e-14 Score=113.82 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH--------
Q 035877 7 THVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR-------- 76 (162)
Q Consensus 7 i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-------- 76 (162)
+..+...+..+++.+ |.+|++.|+||+|+.++..++++.++...+.+.++....++|++..+|.++++..
T Consensus 280 i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~i~~~ 359 (488)
T TIGR02900 280 LLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAP 359 (488)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 444455556778888 9999999999999999999999999999999999999999999999887655533
Q ss_pred ---------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877 77 ---------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR 143 (162)
Q Consensus 77 ---------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~ 143 (162)
+..+++++.||++.+++.++.+. ++++++.+.+...+.+|..|+|+++.+++.+..++..++.+|.
T Consensus 360 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 360 SFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999986 8999998888766789999999999999999998887776553
No 17
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.55 E-value=1.5e-13 Score=112.57 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=115.0
Q ss_pred ehhhHHHHH-HHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc----chhHH-
Q 035877 5 VNTHVITFN-FSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD----SQEIR- 76 (162)
Q Consensus 5 ~~i~~~~~~-~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~- 76 (162)
.++..+... +..+++.+ |.+||+.|+||+|++|+..++++.....++.+.++.++.+++++..+|.. |+|..
T Consensus 265 ~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~ 344 (502)
T TIGR01695 265 NRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTV 344 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 344444443 45677877 99999999999999999999999999999999999999999999999865 33332
Q ss_pred --------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Q 035877 77 --------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSL 136 (162)
Q Consensus 77 --------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~ 136 (162)
+..+.+++.||++.+++.++.+. ++++|+++++. +.+|..|+|+++.+++.+..++.
T Consensus 345 ~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~ 421 (502)
T TIGR01695 345 MTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLI--FPLGLVGIALATSAASMVSSVLL 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999985 78999988886 44799999999999999999887
Q ss_pred HHHHHhc
Q 035877 137 FLIVLRR 143 (162)
Q Consensus 137 ~~~~~~~ 143 (162)
.++.++.
T Consensus 422 ~~~~~~~ 428 (502)
T TIGR01695 422 YLMLNRR 428 (502)
T ss_pred HHHHHHh
Confidence 7766654
No 18
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.21 E-value=4e-10 Score=92.04 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=105.6
Q ss_pred hhhHHHHHH-HHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH------
Q 035877 6 NTHVITFNF-SYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR------ 76 (162)
Q Consensus 6 ~i~~~~~~~-~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~------ 76 (162)
++..+...+ ..|++++ ..++|+.|++|+|++++..+.+.++.+..+++.+++.+.+.+++...+.+|++..
T Consensus 43 ~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~ 122 (488)
T TIGR02900 43 PIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVI 122 (488)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHH
Confidence 344444443 3588888 8899999999999999999999999999999999999999999988776665543
Q ss_pred -----------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHH-----hhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877 77 -----------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-----KLNLHAKGLWIGLICGLAAQASSLFLIV 140 (162)
Q Consensus 77 -----------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~-----~~~~g~~G~~~~~~~~~~~~~~~~~~~~ 140 (162)
+..+++||.+|.+..+..+..+. ++++.+...+.+ ..++++.|..+++.++..+..+....++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~ 201 (488)
T TIGR02900 123 CPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQ-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFF 201 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999998885 555544433332 2345677888888888888888766555
Q ss_pred Hhc
Q 035877 141 LRR 143 (162)
Q Consensus 141 ~~~ 143 (162)
++.
T Consensus 202 ~~~ 204 (488)
T TIGR02900 202 KRK 204 (488)
T ss_pred HHH
Confidence 443
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=99.17 E-value=7.3e-10 Score=89.22 Aligned_cols=123 Identities=11% Similarity=0.119 Sum_probs=99.4
Q ss_pred HHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----------------
Q 035877 15 SYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---------------- 76 (162)
Q Consensus 15 ~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---------------- 76 (162)
..|++++ ..++|+ ++|+|++++....++.+.+..+.+.+++.+.+.+++...+..|+|..
T Consensus 55 ~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 55 GAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWA 132 (416)
T ss_pred cCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Confidence 4444444 667877 78999999999999999999999999999999999998887776643
Q ss_pred -HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877 77 -NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR 142 (162)
Q Consensus 77 -~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
...+++||.||++.++..++.+. ++++.+ +++.+.. .|+.|..+++.+++.+..+...+++.+
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998886 677655 3433322 399999999999999988776665544
No 20
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.04 E-value=2e-08 Score=82.04 Aligned_cols=135 Identities=15% Similarity=0.220 Sum_probs=113.0
Q ss_pred hhhHHHH-HHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----cchhHH-
Q 035877 6 NTHVITF-NFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA-----DSQEIR- 76 (162)
Q Consensus 6 ~i~~~~~-~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~-----~~~~v~- 76 (162)
++..+.. .+..++++. |..|++.-+||.++.++..++++...+.+.++.++....+++++.+++- +.+++.
T Consensus 241 ~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ 320 (451)
T PF03023_consen 241 RLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQL 320 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHH
Confidence 3444433 345566666 9999999999999999999999999999999999999999999988864 223333
Q ss_pred -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877 77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF 137 (162)
Q Consensus 77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~ 137 (162)
.+...+.+.+|+|.++..+..+. ++++.+++++. +.+|..|+.+++.++.++..+...
T Consensus 321 ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~ 397 (451)
T PF03023_consen 321 TASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATSLSAIISALLLY 397 (451)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999995 79988886666 568999999999999999999888
Q ss_pred HHHHhc
Q 035877 138 LIVLRR 143 (162)
Q Consensus 138 ~~~~~~ 143 (162)
..++|+
T Consensus 398 ~~l~r~ 403 (451)
T PF03023_consen 398 ILLRRR 403 (451)
T ss_pred HHHHHH
Confidence 777665
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=98.94 E-value=3.2e-08 Score=79.74 Aligned_cols=133 Identities=9% Similarity=-0.037 Sum_probs=102.6
Q ss_pred eeehhhH-HHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccch--hHH-
Q 035877 3 FSVNTHV-ITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQ--EIR- 76 (162)
Q Consensus 3 i~~~i~~-~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~--~v~- 76 (162)
++.++.. +...+..+++++ |.++++ +|+||.++..++........+.+.++..++++|++..++..|+ +..
T Consensus 256 ~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~ 332 (416)
T PRK15099 256 GVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRD 332 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3455645 457889999999 999995 7889999999999999999999999999999999999987654 322
Q ss_pred ----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877 77 ----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIV 140 (162)
Q Consensus 77 ----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~ 140 (162)
.+...+-..++++.....++.. .++++|+++++. +.+|..|+++++.+++.+.........
T Consensus 333 ~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~ 409 (416)
T PRK15099 333 LFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVF 409 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233445666556655554 578999998877 557999999999999999998776554
Q ss_pred H
Q 035877 141 L 141 (162)
Q Consensus 141 ~ 141 (162)
.
T Consensus 410 ~ 410 (416)
T PRK15099 410 L 410 (416)
T ss_pred H
Confidence 4
No 22
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.88 E-value=1.3e-07 Score=77.94 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=106.3
Q ss_pred HHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----cchhHH----------
Q 035877 14 FSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA-----DSQEIR---------- 76 (162)
Q Consensus 14 ~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~-----~~~~v~---------- 76 (162)
+..++++. |..|++..++|.++.++...+++.++..++++.++.++.+++++.+++- ++.|+.
T Consensus 284 fgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~ 363 (518)
T COG0728 284 FGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYS 363 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 44445555 9999999999999999999999999999999999999999999998853 122222
Q ss_pred ----------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877 77 ----------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR 143 (162)
Q Consensus 77 ----------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~ 143 (162)
++...+.+.+|+|.|+++.+++. ++++.++..+. +.++..|+..++..+.++.+..+.+.++++
T Consensus 364 ~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 364 LGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999995 89998884444 557888999999999888888777766654
No 23
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.85 E-value=5e-08 Score=80.06 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=119.2
Q ss_pred HHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH------------
Q 035877 11 TFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR------------ 76 (162)
Q Consensus 11 ~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~------------ 76 (162)
-+.+..|++.+ ++++|++|+++++......+++...-...+.+... ++.+.+++...+++|+++.
T Consensus 77 ~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip 155 (473)
T KOG1347|consen 77 GVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIP 155 (473)
T ss_pred chHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcc
Confidence 46678888889 99999999999999999999999999988888885 6668899999999999987
Q ss_pred ---------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 035877 77 ---------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRK 144 (162)
Q Consensus 77 ---------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~~ 144 (162)
...-.+|+.++.....+...+.. ++++|++|++.+.+++|..|...+..++++........+.....
T Consensus 156 ~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 156 GLFSYAVSFPLAKFLQAQSITLPLLVIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred hhhhhHHHHHHHHHHHhccCchHHHHHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 67788999999999999999995 89999999999999999999999999999999998887765543
No 24
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.81 E-value=1.2e-07 Score=77.93 Aligned_cols=119 Identities=20% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhccccc--cchhHH---------------------
Q 035877 22 HKVSNELGAGMI-DRAKNAMAVTLKLVVLLAL-IIDLALTFGHNIWAGFFA--DSQEIR--------------------- 76 (162)
Q Consensus 22 ~~is~~~Ga~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~lf~--~~~~v~--------------------- 76 (162)
..+++..|+++. |++++....+.......+. +..++.+++.+++..++. .|+|..
T Consensus 62 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~ 141 (502)
T TIGR01695 62 AFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAA 141 (502)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666555 5888888887776665554 457778889999999883 344431
Q ss_pred HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHH--HHHHHHHHHHHHHHHHHHHhc
Q 035877 77 NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLW--IGLICGLAAQASSLFLIVLRR 143 (162)
Q Consensus 77 ~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~--~~~~~~~~~~~~~~~~~~~~~ 143 (162)
+..+++|+.||.+.+++.+++.+ ++.+.. .+...+++|..|.. +++.++..+..+....++++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~i~~~-i~~i~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 142 VFGGILNARKRFFIPSFSPILFN-IGVILS--LLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHHHhccCeeHHHHHHHHHHH-HHHHHH--HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 78899999999999999999987 444432 33344678999988 999999998888776665543
No 25
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.68 E-value=7.5e-08 Score=75.19 Aligned_cols=74 Identities=31% Similarity=0.479 Sum_probs=69.1
Q ss_pred eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH
Q 035877 3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR 76 (162)
Q Consensus 3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~ 76 (162)
++.++..+.+.+..+++.+ |.+++++|+||+|++++..++++...+..+.+.++.++++++++.++|++|+|+.
T Consensus 256 ~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~ 331 (342)
T TIGR00797 256 IALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVL 331 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4567778888999999999 9999999999999999999999999999999999999999999999999999976
No 26
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.55 E-value=6e-06 Score=67.58 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=99.8
Q ss_pred eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cchh----H
Q 035877 3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA-DSQE----I 75 (162)
Q Consensus 3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~-~~~~----v 75 (162)
.+.++......+..+++.+ |.+++...+||.++.++..+++......++.+..+....+++++..++. ++.+ +
T Consensus 254 ~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~ 333 (480)
T COG2244 254 AAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPI 333 (480)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHH
Confidence 3456667777788888888 9999999999999999999999999999999999999999988777654 4321 1
Q ss_pred H--------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHH
Q 035877 76 R--------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGL 125 (162)
Q Consensus 76 ~--------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~ 125 (162)
. .....+++.|+++..+..+.++. ++++.+.+.+. +..|..|...++
T Consensus 334 l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li--~~~g~~g~~~a~ 394 (480)
T COG2244 334 LQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI--PRFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH--HhhhhhhHHHHH
Confidence 1 67999999999999999999885 67777777766 556788888888
No 27
>PRK10459 colanic acid exporter; Provisional
Probab=98.46 E-value=1.4e-05 Score=65.78 Aligned_cols=114 Identities=11% Similarity=0.127 Sum_probs=91.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-ccc-hhHH-----------------HHhhHH
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFF-ADS-QEIR-----------------NFAGVA 82 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf-~~~-~~v~-----------------~~~~~l 82 (162)
|..++. ++|.++.++..++........+++.++.+.++.|++..++ +++ .+.. ....++
T Consensus 270 P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l 347 (492)
T PRK10459 270 PVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLL 347 (492)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777775 6789999999999999999999998888888888877664 443 1111 556789
Q ss_pred hhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877 83 RGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIV 140 (162)
Q Consensus 83 ~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~ 140 (162)
++.||+|..+..+++.+ .+.+|..+.+. +.+|..|+.+++.+++.+......++.
T Consensus 348 ~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 348 LAKGRADLSFKWNVFKT-FLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHcCccchhHHHHHHHH-HHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988875 67777766555 457999999999999998888777666
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.43 E-value=1.9e-05 Score=64.60 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=105.5
Q ss_pred ehhhHHHHHHHH--HHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--chhHH--
Q 035877 5 VNTHVITFNFSY--GLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD--SQEIR-- 76 (162)
Q Consensus 5 ~~i~~~~~~~~~--gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~~v~-- 76 (162)
.++-.+.+.... +++++ |...+.. ++++|++++..+...........+++++.+++++++..++.. |+|..
T Consensus 18 ~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~l 96 (451)
T PF03023_consen 18 FTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIEL 96 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHH
Confidence 344445554443 46666 8888888 999999999999999999999999999999999999999863 44543
Q ss_pred -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHH
Q 035877 77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLH---AKGLWIGLICGLAAQAS 134 (162)
Q Consensus 77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g---~~G~~~~~~~~~~~~~~ 134 (162)
++.+++|+.+|-..+....++.+ +..+...++ .....| +.++.+|+.++..++.+
T Consensus 97 a~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N-~~~I~~~~~--~~~~~~~~~i~~la~g~~~g~~~~~l 173 (451)
T PF03023_consen 97 AVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFN-LSIILSLLL--LSNSWGQENIYALAWGVLIGAIIQFL 173 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-HHHHHHHHH--HHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988887 333322222 223355 88999999999999998
Q ss_pred HHHHHHHhcC
Q 035877 135 SLFLIVLRRK 144 (162)
Q Consensus 135 ~~~~~~~~~~ 144 (162)
......++..
T Consensus 174 ~~l~~~~~~~ 183 (451)
T PF03023_consen 174 IQLPYLRRFG 183 (451)
T ss_pred HHHHHHHHCC
Confidence 8877776654
No 29
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.72 E-value=0.00035 Score=47.94 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877 77 NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR 143 (162)
Q Consensus 77 ~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~ 143 (162)
....++++.||++..++.++.+. ++++++++.+. +++|..|+.+++.+++........++.+|.
T Consensus 17 ~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 17 PLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999995 89999999885 778999999999999999988877776664
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=96.91 E-value=0.037 Score=45.53 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH-----------------HHhhHHhhcCchhHHHHHHHHHHH
Q 035877 38 NAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR-----------------NFAGVARGCGWQHLAVWVNLATFY 100 (162)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-----------------~~~~~l~g~g~~~~~~~~~~~~~~ 100 (162)
+......++.+..+.+..++.+++.+++..+|.++ +.. ...+.+|+..|.+.....+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~- 152 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP-ELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAV- 152 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 33455666777778777788888888888776543 333 46777788788887777777775
Q ss_pred HhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877 101 FIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF 137 (162)
Q Consensus 101 ~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~ 137 (162)
++.......+.+ .+.|..+..++..++..+..+...
T Consensus 153 i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~ 188 (492)
T PRK10459 153 VAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFG 188 (492)
T ss_pred HHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 568888888888888887776543
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.81 E-value=0.12 Score=38.05 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=66.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhH--H--------------HHhhHHhhcCchhHHH
Q 035877 29 GAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEI--R--------------NFAGVARGCGWQHLAV 92 (162)
Q Consensus 29 Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v--~--------------~~~~~l~g~g~~~~~~ 92 (162)
.++++++.++............+++..++...... ++.+++.. . ...+.+++.+|.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (251)
T PF13440_consen 49 AARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY----FFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYA 124 (251)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 44667777777777766666655555443222222 33332211 1 6789999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877 93 WVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIV 140 (162)
Q Consensus 93 ~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~ 140 (162)
..+.... +........+.+ .+.+..+..++..++..+..+......
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 125 LIDIVRS-LLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLL 170 (251)
T ss_pred HHHHHHH-HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888885 333333333333 333788888888888888777655533
No 32
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=96.66 E-value=0.11 Score=43.56 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=93.5
Q ss_pred HHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cccccc---hhH-H--------------
Q 035877 18 LSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWA-GFFADS---QEI-R-------------- 76 (162)
Q Consensus 18 l~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~~---~~v-~-------------- 76 (162)
++++ |.-.++..++..|++++..............+++++..++.+++. .++... ++- .
T Consensus 66 fs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~ 145 (518)
T COG0728 66 FSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLF 145 (518)
T ss_pred HhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 4566 888888888888899999888887888888889999999999999 444332 221 1
Q ss_pred -----HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877 77 -----NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR 143 (162)
Q Consensus 77 -----~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~ 143 (162)
.+.++++..++-..+.+.-++-+. .-+.....+....+....+..+++.++-..+..+.....++.
T Consensus 146 isL~al~~aiLNs~~~F~~~a~aPvl~Nv-~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 146 ISLSALFGAILNSRNRFFIPAFAPVLLNV-SVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred HHHHHHHHHHHhccCeechhhhhHHHHHH-HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999999999888877762 222233333332222467888889999999999988877765
No 33
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=96.60 E-value=0.15 Score=37.82 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=45.5
Q ss_pred HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877 77 NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR 142 (162)
Q Consensus 77 ~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
...+++|+.++.+.....++... +........+.. .+.+..+...+..++..+..++...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 127 VFSGLLQGLQRFKYIAISNIISS-LLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999998888888875 444434333333 33447888888888888887777666654
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=94.58 E-value=1.2 Score=37.87 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----cch---hHH--------------HHhhHHhhcCchhHH
Q 035877 33 IDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA----DSQ---EIR--------------NFAGVARGCGWQHLA 91 (162)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~~~---~v~--------------~~~~~l~g~g~~~~~ 91 (162)
.+++.+.....+.+...+|.++..+.....+.+..++. +|+ ++. +..++.++..+++..
T Consensus 338 ~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l 417 (549)
T PF04506_consen 338 LKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQL 417 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHH
Confidence 35677788888888888888888877777777877764 122 222 778888888887765
Q ss_pred HHHHHHHH--HHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877 92 VWVNLATF--YFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR 142 (162)
Q Consensus 92 ~~~~~~~~--~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
...+-... .++.+..+|++... ++|..|.-+|-.+.+.++.+.+..++.+
T Consensus 418 ~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 418 DRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433321 24555667777766 8999999999999999999987776654
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=92.72 E-value=4.4 Score=33.16 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=50.4
Q ss_pred hhHHHHHHH-HHHHHH--HHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH------
Q 035877 7 THVITFNFS-YGLSAA--HKVSNELGAGMIDRAKNA-MAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR------ 76 (162)
Q Consensus 7 i~~~~~~~~-~gl~~a--~~is~~~Ga~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~------ 76 (162)
+..++..+. .|+..+ -.++++...++....+.. ...+.......+.+.........+. +++..
T Consensus 51 ~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 123 (480)
T COG2244 51 IIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPVLALLLRIL 123 (480)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ChhhHHHHHHH
Confidence 333433333 566666 446666666666666666 5666666555555555544444332 22211
Q ss_pred -----------HHhhHHhhcCchhHHHHHHHHH
Q 035877 77 -----------NFAGVARGCGWQHLAVWVNLAT 98 (162)
Q Consensus 77 -----------~~~~~l~g~g~~~~~~~~~~~~ 98 (162)
...+.+|+.++.+......+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (480)
T COG2244 124 SLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS 156 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 7889999999999888874333
No 36
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=88.70 E-value=4.2 Score=25.35 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHHHH---HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 035877 15 SYGLSAA---HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIID 55 (162)
Q Consensus 15 ~~gl~~a---~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (162)
++|+-.= ..+-..+-+||+++|++..+++-.++.+..++..
T Consensus 32 PlGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~ 75 (82)
T PF04505_consen 32 PLGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI 75 (82)
T ss_pred hHHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555544 8888999999999999999999888765544433
No 37
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.82 E-value=16 Score=29.87 Aligned_cols=124 Identities=20% Similarity=0.144 Sum_probs=81.1
Q ss_pred HHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchh---HH-----HHhhHHhh
Q 035877 15 SYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQE---IR-----NFAGVARG 84 (162)
Q Consensus 15 ~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~---v~-----~~~~~l~g 84 (162)
.-|++.. =.+|+.+=++|+++......-...+....+..++.+.++..++..-.+---.- +. +....+.|
T Consensus 77 Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~~~~~si~yk~l~~~~FV~m~~~Wi~~iFlS~ 156 (467)
T COG4267 77 TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFVNNQYSIVYKILACALFVGMSLVWILMIFLSG 156 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 67888899999999998888887777777777765333332222111100000 00 56677888
Q ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877 85 CGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR 142 (162)
Q Consensus 85 ~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
+.|-+......++++ .+.+.++.++-. .++.|.-.+..++..........+..+
T Consensus 157 lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 157 LKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888877775 666666555443 478899999999888887776665544
No 38
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.34 E-value=33 Score=28.77 Aligned_cols=119 Identities=16% Similarity=0.033 Sum_probs=74.0
Q ss_pred HHHHHHhcCCChHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhcccccc----c---hhHH--------------H
Q 035877 22 HKVSNELGAGMIDRAKNAM---AVTLKLVVLLALIIDLALTFGHNIWAGFFAD----S---QEIR--------------N 77 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~---~~v~--------------~ 77 (162)
..-+|-+-++++|+.|+.. ...+.....+|.+++.+.....+....+++. + +... +
T Consensus 304 ~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGi 383 (530)
T KOG2864|consen 304 IYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGI 383 (530)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccH
Confidence 5556667777666666554 4555666666666666666666667777641 2 2222 6
Q ss_pred HhhHHhhcCchhHHHHHHHHH--HHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877 78 FAGVARGCGWQHLAVWVNLAT--FYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR 142 (162)
Q Consensus 78 ~~~~l~g~g~~~~~~~~~~~~--~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
..+++.+.++.+..-.-+-.. ..++.+.++|++..+ +|..|.-.|-.+.+.++-.....++++
T Consensus 384 tEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 384 TEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776654322111 124566678888876 456788888888777777766555443
No 39
>PRK09546 zntB zinc transporter; Reviewed
Probab=65.53 E-value=30 Score=27.13 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHh---h-CCch----hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 035877 93 WVNLATFYFIGMPLALLFGFK---L-NLHA----KGLWIGLICGLAAQASSLFLIVLRRKF 145 (162)
Q Consensus 93 ~~~~~~~~~i~i~l~~~~~~~---~-~~g~----~G~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (162)
..++++ .+.+|+.++.+++ + +|+. .|.|+...+ ..+.++..++++++++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 344444 4666888776653 1 1322 244433333 33444445667777777
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.19 E-value=16 Score=24.60 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 035877 118 AKGLWIGLICGLAAQASSLFLIVLRRKFT 146 (162)
Q Consensus 118 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (162)
+.|+-+|..++-+...++..++++|++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44666666666655554444555544433
No 41
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=58.65 E-value=56 Score=25.33 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHh---h-CCch----hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 035877 101 FIGMPLALLFGFK---L-NLHA----KGLWIGLICGLAAQASSLFLIVLRRKF 145 (162)
Q Consensus 101 ~i~i~l~~~~~~~---~-~~g~----~G~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (162)
.+-.|..++.+++ + +|+. .|.|+.+.+ ..+.++..++++++++|
T Consensus 266 ~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~-m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 266 TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIV-MAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 4666777776553 1 1222 233333333 33333445666777777
No 42
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=54.61 E-value=98 Score=23.87 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=53.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhccccccchhHH-----HHhhHHhhcCchhHHHHHH
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLK-LVVLLALIIDLALTFGHNIWAGFFADSQEIR-----NFAGVARGCGWQHLAVWVN 95 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-----~~~~~l~g~g~~~~~~~~~ 95 (162)
...-+..-+||+++.++.-..+.. ..+...++..+..++..+.+-.+...=|+.. +..+++-+.|-.-.-..+.
T Consensus 122 h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~~v~~Gl~vaggmLPAvGfAmLl~~m~ 201 (265)
T TIGR00822 122 HAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPEVVTHGLQIAGGIIVVVGYAMVLRMMF 201 (265)
T ss_pred HHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 566678899999999776544333 3333444444434444444444444455554 5666666665444332222
Q ss_pred HHHHHHhHHHHHHHHHHhhCCchhHHHH
Q 035877 96 LATFYFIGMPLALLFGFKLNLHAKGLWI 123 (162)
Q Consensus 96 ~~~~~~i~i~l~~~~~~~~~~g~~G~~~ 123 (162)
-=.+ ..-..+.+++.-+.+++..++..
T Consensus 202 ~k~~-~~ff~lGF~laayl~l~~l~iAi 228 (265)
T TIGR00822 202 KAYL-MPFFYLGFLFAAYTDFSLLAFGA 228 (265)
T ss_pred hcch-HHHHHHHHHHHHHhCCcHHHHHH
Confidence 1111 22223556666666777666543
No 43
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=45.87 E-value=1.4e+02 Score=23.03 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=54.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhhhhccccccchhHH-----HHhhHHhhcCchhHHHHH
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLKL-VVLLALIIDLA-LTFGHNIWAGFFADSQEIR-----NFAGVARGCGWQHLAVWV 94 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~~lf~~~~~v~-----~~~~~l~g~g~~~~~~~~ 94 (162)
...-++.-++|.++.++.-..+... .+...++..+. .++..+.+-.+...=||.. +..+++-+.|-.-.-..+
T Consensus 122 h~adk~ae~g~~k~i~~~~~~~~~~~~~~~~~~~f~~~~~fG~~~v~~~~~~iP~~v~~GL~vaggmLPAvGfAmLl~~i 201 (262)
T PRK15065 122 HAADKAAEEGNFRAIEWLHVSALLLQALRIAIPAALVALAVGTSAVQSMLNAIPEVLTGGLNIGGGMIVVVGYAMVINMM 201 (262)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666788899999998765554433 33344444343 3444444444444445554 566666666654433322
Q ss_pred HHHHHHHhHHHHHHHHHHhhCCchhHHHH
Q 035877 95 NLATFYFIGMPLALLFGFKLNLHAKGLWI 123 (162)
Q Consensus 95 ~~~~~~~i~i~l~~~~~~~~~~g~~G~~~ 123 (162)
.-=.+ ..-..+.+++.-+.+++..++..
T Consensus 202 ~~k~~-~~ff~lGFvl~ayl~l~~l~iAi 229 (262)
T PRK15065 202 ATREL-MPFFYLGFVLAAFTNLNLIALGV 229 (262)
T ss_pred hccch-HHHHHHHHHHHHHhCCcHHHHHH
Confidence 21122 22223556666666777666554
No 44
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=44.91 E-value=33 Score=25.46 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035877 11 TFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALT 59 (162)
Q Consensus 11 ~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (162)
.....+++|.+ +++|+.+|+.+....++-...+-...++.+.+.+.+.+
T Consensus 118 ~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~~~~ 168 (216)
T COG0170 118 AGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVLY 168 (216)
T ss_pred HHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHHHHH
Confidence 34566777777 99999999864433333333444444444444443333
No 45
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=44.56 E-value=75 Score=24.95 Aligned_cols=43 Identities=33% Similarity=0.390 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHhhCCchh---------HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 035877 101 FIGMPLALLFGFKLNLHAK---------GLWIGLICGLAAQASSLFLIVLRRKF 145 (162)
Q Consensus 101 ~i~i~l~~~~~~~~~~g~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (162)
.+-+|..++.+++ +|++. |.|++..+. .+.+++..+++++++|
T Consensus 270 ~iflPpTlIagiy-GMNf~~mPel~~~~Gy~~~l~~m-~~~~~~~~~~frrk~W 321 (322)
T COG0598 270 TIFLPPTLITGFY-GMNFKGMPELDWPYGYPIALILM-LLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHhhHHHHccc-ccCCCCCcCCCCcccHHHHHHHH-HHHHHHHHHHHHhcCc
Confidence 4556777776553 23222 555555443 3444445666777777
No 46
>PF03916 NrfD: Polysulphide reductase, NrfD; InterPro: IPR005614 NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway [].
Probab=40.80 E-value=1.5e+02 Score=22.96 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH----HHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 035877 10 ITFNFSYGLSAA----HKVSNELGAGMIDRAKNAMAVTLKLVVLLA 51 (162)
Q Consensus 10 ~~~~~~~gl~~a----~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~ 51 (162)
..|.+..|++.+ ....+-+|+++.++.++..+.+..++...-
T Consensus 16 ~~y~f~~glaaG~~~~a~~~~~f~~~~~~~~~~~a~~~~~~a~~~l 61 (313)
T PF03916_consen 16 AVYLFFGGLAAGAFLLASLAYLFGKKKYKPFRRLARLAALLALAAL 61 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHH
Confidence 346777777777 556677888887777788777777654443
No 47
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=38.57 E-value=2e+02 Score=22.78 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=56.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhhhccccccc-----hh-----
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLK-----------------LVVLLALIIDLALTFGHNIWAGFFADS-----QE----- 74 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~i~~lf~~~-----~~----- 74 (162)
...+..+|++|.+++--....... ..+..++.+++-.+.+..-+.+-.+.+ |.
T Consensus 184 ~~~sfahGaND~~naig~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~i~~G~~~~G~rv~~tvG~~it~l~p~~g~~a 263 (326)
T PF01384_consen 184 AFVSFAHGANDVANAIGPLAAILIIYNTGSVNSGKAEIPWWILLLGGLAIALGTLTGGWRVIRTVGEKITKLDPSRGFSA 263 (326)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhcCCcccccccChHHHHHHHHHHHHHHHHHhhHHHHHHhccchhccCcchhHHH
Confidence 667788888888776544433332 444555555555666666666655432 11
Q ss_pred -HH-------------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHH
Q 035877 75 -IR-------------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLF 110 (162)
Q Consensus 75 -v~-------------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~ 110 (162)
.. +-.|..|+....+....-.++..|++.+|.+.++
T Consensus 264 ~l~sa~~v~~as~~GlPvStT~~~vgaivGvG~~~~~~~V~w~~~~~I~~~Wi~T~p~a~~~ 325 (326)
T PF01384_consen 264 QLSSALTVLIASLLGLPVSTTHAIVGAIVGVGLARGFRSVNWKTVRKIVLGWILTLPIAALL 325 (326)
T ss_pred HHHHHHHHHHHHhcCCCcchhheeeeeeEeeeeecCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 00 4566667777778888888888899998887653
No 48
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=35.93 E-value=75 Score=17.15 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 035877 121 LWIGLICGLAAQASS 135 (162)
Q Consensus 121 ~~~~~~~~~~~~~~~ 135 (162)
+|.+..++..+.+..
T Consensus 8 VW~sYg~t~l~l~~l 22 (45)
T TIGR03141 8 VWLAYGITALVLAGL 22 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555554444443
No 49
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=33.64 E-value=1.2e+02 Score=18.96 Aligned_cols=48 Identities=19% Similarity=0.054 Sum_probs=36.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFF 69 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf 69 (162)
.-+=+.+|..+.+-.+....+....+..-.+....+.....+.+...+
T Consensus 30 ~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (121)
T PF02687_consen 30 IAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLINFL 77 (121)
T ss_pred HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444488999999999999999998887777666666666665555544
No 50
>PRK00523 hypothetical protein; Provisional
Probab=33.20 E-value=43 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 035877 119 KGLWIGLICGLAAQASSLFLIVLR 142 (162)
Q Consensus 119 ~G~~~~~~~~~~~~~~~~~~~~~~ 142 (162)
.|+|+...+-..+.+++..+++.+
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444444444444443
No 51
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=32.68 E-value=38 Score=18.08 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=10.1
Q ss_pred cchhHH----HHhhHHhhcCc
Q 035877 71 DSQEIR----NFAGVARGCGW 87 (162)
Q Consensus 71 ~~~~v~----~~~~~l~g~g~ 87 (162)
.|||++ ++-.+++++|+
T Consensus 21 ~DpdvqrgL~~ll~~lk~lGk 41 (42)
T PF07849_consen 21 RDPDVQRGLGFLLAFLKALGK 41 (42)
T ss_pred cCHHHHHHHHHHHHHHHHHcC
Confidence 466666 55566666654
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=32.65 E-value=39 Score=27.50 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH
Q 035877 6 NTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR 76 (162)
Q Consensus 6 ~i~~~~~~~~~gl~~a~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~ 76 (162)
++..++..+..|++.|+.++.+-|---.+.....+..++...++..++..++++++-..+-+++..+..+.
T Consensus 3 ~vl~l~~ll~agi~~g~~~~~qqgyVlI~~~~~~ie~Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~ 73 (400)
T COG3071 3 RVLLLFVLLLAGIGVGLAIAGQQGYVLIQTDNYNIEMSLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTR 73 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCceEEEecceeeeeeHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45566667777777778888888877777777777777777777777777777766666666666665544
No 53
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=32.63 E-value=88 Score=16.93 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 035877 121 LWIGLICGLAAQASSL 136 (162)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (162)
+|.+..++..+.+...
T Consensus 7 VW~sYg~t~~~l~~l~ 22 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLI 22 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555444444433
No 54
>PF09600 Cyd_oper_YbgE: Cyd operon protein YbgE (Cyd_oper_YbgE); InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria [].
Probab=30.94 E-value=1.3e+02 Score=18.74 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccchhHH-------HHhhHHhhcCc
Q 035877 46 LVVLLALIIDLALTFGHNIWAGFFADSQEIR-------NFAGVARGCGW 87 (162)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-------~~~~~l~g~g~ 87 (162)
++++.+...+..++..++.+..-.+.-+..+ ++.++..|.|-
T Consensus 5 LSlilAl~la~~v~~~P~~fA~~~g~~~~~~~~ll~wavc~~~IhGvGF 53 (82)
T PF09600_consen 5 LSLILALALAACVFWDPNRFAAATGGFSHWLAPLLIWAVCAGWIHGVGF 53 (82)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHcCCCcHHHHHHHHHHHHHHHhhcccc
Confidence 5777788888888888888877776544433 78888888874
No 55
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=29.98 E-value=3e+02 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 035877 31 GMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAG 67 (162)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 67 (162)
.+.++.+++.+++...+.....+..++.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999998888888777777766
No 56
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=29.63 E-value=2.6e+02 Score=21.53 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=37.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhccccccchhHH-----HHhhHHhhcCchh
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLKLVV-LLALIIDLALTFGHNIWAGFFADSQEIR-----NFAGVARGCGWQH 89 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~lf~~~~~v~-----~~~~~l~g~g~~~ 89 (162)
...-+..-++|+++.++.-..+..... ....+..+..++..+.+-.+...=|+.. +..+++-+.|-.-
T Consensus 123 ~~adk~ae~gn~k~i~~~~~~~~~~~~~~~~~~~fl~~~fG~~~v~~~~~~iP~~v~~GL~vaggmLPAvGfAm 196 (267)
T PRK09757 123 TKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGL 196 (267)
T ss_pred HHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 566678889999999876555433332 3333333334444444444555445544 5555555555443
No 57
>PRK10739 putative antibiotic transporter; Provisional
Probab=29.30 E-value=2.3e+02 Score=20.71 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH
Q 035877 10 ITFNFSYGLSAA-HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR 76 (162)
Q Consensus 10 ~~~~~~~gl~~a-~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~ 76 (162)
-++.+..-+++. .+++- ....++++-|+..++....+.. +.++..++++.+.++|+-+-+..
T Consensus 10 ~Lf~iinPig~ipiflsl-t~~~~~~~r~~ia~~a~~~a~~----ill~f~~~G~~iL~~fGIsl~af 72 (197)
T PRK10739 10 LLILIMDPLGNLPIFMSV-LKHLEPKRRRAIMIRELLIALL----VMLVFLFAGEKILAFLNLRTETV 72 (197)
T ss_pred HHHHHHhHhhHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHH
Confidence 355666667777 55544 4555666667777766555443 33456678999999999664443
No 58
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=27.84 E-value=3.1e+02 Score=21.69 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHhhCCch---------hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 035877 101 FIGMPLALLFGFKLNLHA---------KGLWIGLICGLAAQASSLFLIVLRRKF 145 (162)
Q Consensus 101 ~i~i~l~~~~~~~~~~g~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (162)
.+-.|...+.+.+ +|++ .|.|++..+ ..+.++...+++++++|
T Consensus 264 ~if~pptliagiy-GMNf~~mP~~~~~~g~~~~l~~-~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 264 VVFLPPTLVASSY-GMNFEFMPELKWSFGYPGAIIL-MILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHhhc-ccccCCCCCCCCcHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence 4556666666542 3332 233333332 22233334566777777
No 59
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=24.48 E-value=1.2e+02 Score=22.30 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHH--HHHHHHhcCC
Q 035877 8 HVITFNFSYGLSAA--HKVSNELGAG 31 (162)
Q Consensus 8 ~~~~~~~~~gl~~a--~~is~~~Ga~ 31 (162)
..+......+.+.+ .++|+.+|+.
T Consensus 131 ~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 131 LALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455667777777 9999999998
No 60
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=23.71 E-value=5.2e+02 Score=22.98 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=24.4
Q ss_pred HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHH
Q 035877 77 NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLI 126 (162)
Q Consensus 77 ~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~ 126 (162)
+.+|.-.|+.-+-.|...- .+.+..+|.+......|+.|+.++..
T Consensus 373 II~Gla~G~~St~~pvl~i-----~~~i~~sy~l~~~~~~GlyGiaiAa~ 417 (682)
T PF03030_consen 373 IISGLAVGMESTAIPVLVI-----AAAILISYYLGGGSGPGLYGIAIAAV 417 (682)
T ss_dssp HHHHHHHHHHCTHHHHHHH-----HHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5556656666666555542 44555667776444447777776654
No 61
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=23.67 E-value=3.6e+02 Score=21.14 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhhhc-cccccchhHH----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHH
Q 035877 50 LALIIDLALTFGHNIWA-GFFADSQEIR----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF 112 (162)
Q Consensus 50 ~~~~~~~~~~~~~~~i~-~lf~~~~~v~----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~ 112 (162)
...+.....+.+...+. ++|.-|++.. ...+..|+-.|...-......-+-.+.+.+--.+..
T Consensus 88 ~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~ 167 (305)
T PF03601_consen 88 IIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGH 167 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHH
Confidence 33444445566667777 8888777755 466677775544332222211111222222222222
Q ss_pred hhCC--chhHHHHHHHHHHHHH
Q 035877 113 KLNL--HAKGLWIGLICGLAAQ 132 (162)
Q Consensus 113 ~~~~--g~~G~~~~~~~~~~~~ 132 (162)
..++ ...|+|.|..+-+.-+
T Consensus 168 ~l~l~~~~~G~w~G~sIh~~aq 189 (305)
T PF03601_consen 168 ALGLSPQQFGAWAGGSIHDTAQ 189 (305)
T ss_pred HhCCCHHHHHHHhhhhhcccch
Confidence 3333 3568998887744433
No 62
>PRK14992 tetrathionate reductase subunit C; Provisional
Probab=22.73 E-value=3.7e+02 Score=21.49 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=24.0
Q ss_pred ehhhHHHHHHHHHHHHH-HHHH--HHhcCCChHHHHHHHHHHHHHHHHH
Q 035877 5 VNTHVITFNFSYGLSAA-HKVS--NELGAGMIDRAKNAMAVTLKLVVLL 50 (162)
Q Consensus 5 ~~i~~~~~~~~~gl~~a-~~is--~~~Ga~~~~~~~~~~~~~~~~~~~~ 50 (162)
.......|.+..|++.+ .+++ ...+.++.++ ..+.+...+...
T Consensus 14 Wg~~iv~YlFl~GlaaGa~lla~~~~~~~~~~~~---~~~~a~llA~~~ 59 (335)
T PRK14992 14 WLPWAVQYFFFIGIAACAALFACYLHWRKKDAAT---EENRALLIAVTC 59 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh---HHHHHHHHHHHH
Confidence 34455678889999999 4444 2344443333 334455544443
No 63
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=1.7e+02 Score=20.58 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 035877 35 RAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD 71 (162)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~ 71 (162)
+.|+..+..+.....++....+.++.+...+..+++.
T Consensus 4 r~r~Rl~~il~~~a~l~~a~~l~Lyal~~ni~~fy~P 40 (153)
T COG2332 4 RRRKRLWIILAGLAGLALAVGLVLYALRSNIDYFYTP 40 (153)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccCceEEECH
Confidence 4466677777777778888888889899888888874
No 64
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=20.40 E-value=3.4e+02 Score=19.50 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 035877 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138 (162)
Q Consensus 102 i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~ 138 (162)
-.+|. |++-...+|.+..-++-..+...+.+..+..
T Consensus 29 S~vPi-~LF~~Ih~m~~~~~~I~f~i~t~~sayll~f 64 (170)
T PF07074_consen 29 SAVPI-WLFWRIHQMDLYDSLIVFVIVTLVSAYLLAF 64 (170)
T ss_pred HHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 33444 6666667777776555555555555544433
Done!