Query 035877
Match_columns 162
No_of_seqs 113 out of 1377
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 12:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.8 7.8E-20 2.7E-24 146.1 9.4 143 2-144 277-447 (460)
2 3mkt_A Multi antimicrobial ext 99.5 2.6E-14 9E-19 114.0 9.9 139 4-144 53-218 (460)
3 4ev6_A Magnesium transport pro 58.0 33 0.0011 25.9 6.7 43 101-145 287-338 (339)
4 2iub_A CORA, divalent cation t 28.7 28 0.00096 26.6 2.1 12 101-112 311-322 (363)
5 3cx5_C Cytochrome B-C1 complex 21.7 2.9E+02 0.0098 21.5 7.3 58 77-135 97-155 (385)
6 2qjy_A Cytochrome B; cytochrom 21.6 3.1E+02 0.011 21.8 8.9 58 77-135 112-170 (445)
7 2k1k_A Ephrin type-A receptor 15.6 1.3E+02 0.0044 14.9 3.2 12 120-131 15-26 (38)
8 1ug2_A 2610100B20RIK gene prod 15.0 2.2E+02 0.0076 17.3 3.9 25 22-46 59-83 (95)
9 3hd7_A Vesicle-associated memb 13.8 2.3E+02 0.0078 16.9 3.8 35 26-60 50-84 (91)
10 2knc_B Integrin beta-3; transm 13.4 2.2E+02 0.0077 16.6 4.4 18 118-135 10-27 (79)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.81 E-value=7.8e-20 Score=146.11 Aligned_cols=143 Identities=25% Similarity=0.337 Sum_probs=129.9
Q ss_pred EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877 2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--- 76 (162)
Q Consensus 2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--- 76 (162)
+++.++..+.+.+..+++++ |.+|+++|+||+|++++..+++...+..++++.++.++++++++..+|++|+|+.
T Consensus 277 ~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 356 (460)
T 3mkt_A 277 QVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA 356 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 35678889999999999999 9999999999999999999999999999999999999999999999999887643
Q ss_pred ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hC-CchhHHHHHHHHHHHHHH
Q 035877 77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LN-LHAKGLWIGLICGLAAQA 133 (162)
Q Consensus 77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~-~g~~G~~~~~~~~~~~~~ 133 (162)
+..++++|.||++.+++.++++.|++++|+++++... ++ +|..|+|+++.+++.+..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~ 436 (460)
T 3mkt_A 357 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAA 436 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHH
Confidence 6789999999999999999999889999999999987 67 999999999999999998
Q ss_pred HHHHHHHHhcC
Q 035877 134 SSLFLIVLRRK 144 (162)
Q Consensus 134 ~~~~~~~~~~~ 144 (162)
++..+++++..
T Consensus 437 ~~~~~~~~~~~ 447 (460)
T 3mkt_A 437 LMLGQRLYWLQ 447 (460)
T ss_dssp HHHHSSSSSSC
T ss_pred HHHHHHHHHHH
Confidence 87666555443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.54 E-value=2.6e-14 Score=113.99 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=120.8
Q ss_pred eehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH-----
Q 035877 4 SVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR----- 76 (162)
Q Consensus 4 ~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~----- 76 (162)
+.++..+...+..|++.+ +.++|++|++|+|++++..+.++.+....+++..++ +.+.+++..+++.|+|+.
T Consensus 53 ~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 131 (460)
T 3mkt_A 53 AASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVG 131 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHH
Confidence 445666667778888888 999999999999999999999999999999998765 788899999998887654
Q ss_pred ----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHHHHHH
Q 035877 77 ----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQASSL 136 (162)
Q Consensus 77 ----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~~~~~ 136 (162)
...+++||.||++.++..++++. ++++++++++.+. |++|+.|+.+++.+++.+..++.
T Consensus 132 ~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~ 210 (460)
T 3mkt_A 132 YMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLL 210 (460)
T ss_dssp HHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHH
Confidence 67889999999999999999996 7899999999875 47999999999999999999887
Q ss_pred HHHHHhcC
Q 035877 137 FLIVLRRK 144 (162)
Q Consensus 137 ~~~~~~~~ 144 (162)
..++++.+
T Consensus 211 ~~~~~~~~ 218 (460)
T 3mkt_A 211 LFYIVTSK 218 (460)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCc
Confidence 77766543
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=58.03 E-value=33 Score=25.93 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHhhCCch---------hHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 035877 101 FIGMPLALLFGFKLNLHA---------KGLWIGLICGLAAQASSLFLIVLRRKF 145 (162)
Q Consensus 101 ~i~i~l~~~~~~~~~~g~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (162)
.+-+|+.++.+.+ +|.+ .|.|+.+.+ ..+.++..++++++++|
T Consensus 287 ~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 287 TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 4667888777653 3322 355554443 44445555667777777
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.68 E-value=28 Score=26.61 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHH
Q 035877 101 FIGMPLALLFGF 112 (162)
Q Consensus 101 ~i~i~l~~~~~~ 112 (162)
.+-+|+.++.+.
T Consensus 311 ~IflP~T~IaGi 322 (363)
T 2iub_A 311 TIFMPLTFIAGI 322 (363)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhh
Confidence 456677766654
No 5
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=21.67 E-value=2.9e+02 Score=21.50 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=38.9
Q ss_pred HHhhHHhh-cCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q 035877 77 NFAGVARG-CGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASS 135 (162)
Q Consensus 77 ~~~~~l~g-~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~ 135 (162)
+..+++.| ..+++...+..-+...++. -....+++...||-.+.|-++++.+.+.++-
T Consensus 97 i~Rglyygsy~~Pr~~~W~~Gv~l~ll~-m~~aF~GYvLPwgQmS~WgatViTnLlsaIP 155 (385)
T 3cx5_C 97 MAKGLYYGSYRSPRVTLWNVGVIIFILT-IATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (385)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHH-HHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHhhcccCCCCcceeeecHHHHHHH-HHHHHHhhhccCCcchhHHHHHHHHHHHHhh
Confidence 45555554 3444555665544433333 3556778888999999999999998877764
No 6
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=21.59 E-value=3.1e+02 Score=21.81 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=39.8
Q ss_pred HHhhHHhh-cCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q 035877 77 NFAGVARG-CGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASS 135 (162)
Q Consensus 77 ~~~~~l~g-~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~ 135 (162)
+..+++.| ..+++...+..-+..+++. -....+++...||-.+.|-++++.+.+.++-
T Consensus 112 i~RglyygsY~~Pr~~~W~~Gv~l~ll~-m~taF~GYvLPwgQmSfWgatVITnLlsaIP 170 (445)
T 2qjy_A 112 IFRGLYYGSYKAPREVTWIVGMLIYLAM-MATAFMGYVLPWGQMSFWGATVITGLFGAIP 170 (445)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHH-HHHHHHHHHTTCBHHHHHHHHHHHHHHHTST
T ss_pred HHHHHhhcccCCCccceeeehHHHHHHH-HHHHHHheeccCCccchHHHHHHHHHHHHhh
Confidence 45555554 3444555665544443333 3556778889999999999999999887764
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=15.57 E-value=1.3e+02 Score=14.95 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 035877 120 GLWIGLICGLAA 131 (162)
Q Consensus 120 G~~~~~~~~~~~ 131 (162)
|+-.+.+.+-.+
T Consensus 15 GiVvG~v~gv~l 26 (38)
T 2k1k_A 15 AVIFGLLLGAAL 26 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeehHHHHHHHH
Confidence 444444444333
No 8
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=15.00 E-value=2.2e+02 Score=17.35 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLKL 46 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~~ 46 (162)
..+++.+|.+.++++++.++..+.+
T Consensus 59 a~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5689999999999999999887654
No 9
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=13.76 E-value=2.3e+02 Score=16.88 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035877 26 NELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTF 60 (162)
Q Consensus 26 ~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (162)
+.+-+.-.+.-++..++-+.+-+++++++.+++++
T Consensus 50 ~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 50 SQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433334455566666666666666655555443
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.40 E-value=2.2e+02 Score=16.57 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 035877 118 AKGLWIGLICGLAAQASS 135 (162)
Q Consensus 118 ~~G~~~~~~~~~~~~~~~ 135 (162)
+.++..+++.+-.+.+++
T Consensus 10 ~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 444555555544444443
Done!