Query 035877
Match_columns 162
No_of_seqs 113 out of 1377
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 12:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035877.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035877hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gg1 f.58.1.1 (G:7-296) Mal 12.4 1.9E+02 0.014 19.0 6.3 51 23-74 184-235 (290)
2 d2iuba2 f.17.3.1 (A:286-349) M 12.2 93 0.0068 15.7 2.8 12 101-112 14-25 (64)
3 d2fyuk1 f.23.15.1 (K:1-53) Sub 12.0 41 0.003 17.0 1.1 30 24-53 2-31 (53)
4 d1v54m_ f.23.7.1 (M:) Mitochon 11.2 69 0.0051 15.3 1.7 24 87-113 14-37 (43)
5 d3d31c1 f.58.1.1 (C:13-260) Su 10.0 2.1E+02 0.015 18.1 7.4 38 22-59 159-196 (248)
6 d1nekc_ f.21.2.2 (C:) Succinat 9.5 1.8E+02 0.013 16.9 4.2 26 32-57 102-127 (129)
7 d1ppjc2 f.21.1.2 (C:15-260) Mi 8.8 2.6E+02 0.019 18.3 7.2 56 77-135 84-140 (246)
8 d2axti1 f.23.37.1 (I:1-35) Pho 8.6 94 0.0069 13.9 1.5 9 65-73 20-28 (35)
9 d2csba3 a.60.2.4 (A:410-464) T 8.5 95 0.0069 14.9 1.7 11 31-41 23-33 (55)
10 d3cx5c2 f.21.1.2 (C:1-261) Mit 8.2 2.9E+02 0.021 18.3 7.4 58 77-135 97-155 (261)
No 1
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=12.36 E-value=1.9e+02 Score=18.95 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=36.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccchh
Q 035877 23 KVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNI-WAGFFADSQE 74 (162)
Q Consensus 23 ~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~lf~~~~~ 74 (162)
=.++..|+++.+.-++...-.+.=++..+.++..+. .+.+. .+.+++.+++
T Consensus 184 EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~-~~~~f~~~~~~~~~~~ 235 (290)
T d2r6gg1 184 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIA-AITEVPVASLLLRDVN 235 (290)
T ss_dssp HHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHTCCHHHHHHCCSGG
T ss_pred hhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhh-hccccccceeccCCCC
Confidence 346889999999999998888888888887776543 34443 4555554443
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.21 E-value=93 Score=15.74 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=7.7
Q ss_pred HhHHHHHHHHHH
Q 035877 101 FIGMPLALLFGF 112 (162)
Q Consensus 101 ~i~i~l~~~~~~ 112 (162)
.+-+|++++.+.
T Consensus 14 ~iflP~t~i~gi 25 (64)
T d2iuba2 14 TIFMPLTFIAGI 25 (64)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhh
Confidence 466677766644
No 3
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.99 E-value=41 Score=16.97 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=21.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 035877 24 VSNELGAGMIDRAKNAMAVTLKLVVLLALI 53 (162)
Q Consensus 24 is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~ 53 (162)
.++-+|.+..+.++.-......++..-++.
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl~ 31 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAVG 31 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhee
Confidence 356678888888888888877776665543
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.17 E-value=69 Score=15.33 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHh
Q 035877 87 WQHLAVWVNLATFYFIGMPLALLFGFK 113 (162)
Q Consensus 87 ~~~~~~~~~~~~~~~i~i~l~~~~~~~ 113 (162)
++.+.+-+.+++ +-.|.+|++...
T Consensus 14 E~aigLt~~f~~---~L~PaGwVLshL 37 (43)
T d1v54m_ 14 EQAIGLSVTFLS---FLLPAGWVLYHL 37 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH---HHccHHHHHHHH
Confidence 344444444443 445778887654
No 5
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=10.01 E-value=2.1e+02 Score=18.05 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=29.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035877 22 HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALT 59 (162)
Q Consensus 22 ~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (162)
--.++..|+++.++-++...=...-.+..+..+....-
T Consensus 159 ~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~ 196 (248)
T d3d31c1 159 ENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARA 196 (248)
T ss_dssp HHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999888777777777666554333
No 6
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=9.54 E-value=1.8e+02 Score=16.86 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 035877 32 MIDRAKNAMAVTLKLVVLLALIIDLA 57 (162)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (162)
..+.+++..+..+..+++.++.....
T Consensus 102 ~~~~~~~s~~~~~~~si~~s~~~~~~ 127 (129)
T d1nekc_ 102 TFEAGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888777777777666543
No 7
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.81 E-value=2.6e+02 Score=18.32 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHhhHHhh-cCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q 035877 77 NFAGVARG-CGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASS 135 (162)
Q Consensus 77 ~~~~~l~g-~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~ 135 (162)
+..+++.| ..+++ .-....+- .+.+.....+++...||-.+.|.++++.++..++.
T Consensus 84 m~r~~~~~sy~~~~-~w~~G~~l--~~l~m~~af~GY~Lpw~qms~wa~~V~t~l~~~iP 140 (246)
T d1ppjc2 84 VGRGLYYGSYTFLE-TWNIGVIL--LLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIP 140 (246)
T ss_dssp HHHHHHHTGGGSHH-HHHHHHHH--HHHHHHHHHHHHHTTCBHHHHHHHHHHHGGGGGST
T ss_pred HHHHHHhcCccchH-HHHHHHHH--HHHHHHHHHeeccCCCcchhHHHHHHHHHHHHHHH
Confidence 45555554 33444 32222222 23334556778889999999999999998876554
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.58 E-value=94 Score=13.93 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=4.6
Q ss_pred hccccccch
Q 035877 65 WAGFFADSQ 73 (162)
Q Consensus 65 i~~lf~~~~ 73 (162)
+++++++||
T Consensus 20 iFGFLSnDP 28 (35)
T d2axti1 20 VFGFLSGDP 28 (35)
T ss_dssp HHHHHTTCT
T ss_pred HHhhccCCC
Confidence 444555554
No 9
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=8.54 E-value=95 Score=14.88 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=7.8
Q ss_pred CChHHHHHHHH
Q 035877 31 GMIDRAKNAMA 41 (162)
Q Consensus 31 ~~~~~~~~~~~ 41 (162)
||+++.++.++
T Consensus 23 gnpervkqlar 33 (55)
T d2csba3 23 GNPERVKQLAR 33 (55)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 47888877654
No 10
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.20 E-value=2.9e+02 Score=18.34 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=39.4
Q ss_pred HHhhHHhhc-CchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q 035877 77 NFAGVARGC-GWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASS 135 (162)
Q Consensus 77 ~~~~~l~g~-g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~ 135 (162)
+..+++.|. .+++.-.+..-+.. .+.+....+.++...||-.+.|.++++.+...++.
T Consensus 97 ~~r~~~~gsy~~pre~~W~~Gv~l-~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 97 MAKGLYYGSYRSPRVTLWNVGVII-FILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHH-HHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHhccccCccchhHHhhHHH-HHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 556666553 44555555554443 33334556778888899999999999999887765
Done!