BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035878
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 158/385 (41%), Gaps = 37/385 (9%)
Query: 112 LDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLAL 171
LD+S NN +G I P L + KN L+ LQ+N +G+IP + NC L L L
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNT-------LQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 172 DGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV 231
N+LSG IPSSLG+LS L L + N L GEIP + + L L L
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL------------ 470
Query: 232 CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLS 291
FN +G IP+ L +C++L + L +N LTG++ + G NL + LS
Sbjct: 471 -----------DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQI 351
N G + + G C+ L L L N G IPA + G+ I
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYI 575
Query: 352 GNLTELSTLSLNGN--DISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXX 409
N GN + G E++ G +
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 410 XXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
G IP +IG++ L +L+L +N ++G IP ++ L L ++LS N L G IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 470 XXXXXXXXXXXXXXXYNNLEGPLPD 494
NNL GP+P+
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 178/430 (41%), Gaps = 61/430 (14%)
Query: 71 IVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPD 130
++ + G + + ++ ++G D+D S NL F LDVS NN + GI
Sbjct: 169 VLSDGCGELKHLAISGNKISG---DVDVSRCVNL-EF----LDVSSNNFSTGI------- 213
Query: 131 DKNQPMTG-LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSD 189
P G L++ + N LSG I C L LL + N GPIP L
Sbjct: 214 ----PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 267
Query: 190 LAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQV----------------- 231
L L++A N+ +GEIP + G LT L L N G P
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 232 -----------CKGGKLINFTASFNHFSGPIPTSLKSCS-SLYRVRLESNELTGDLEQDF 279
+G K+++ SFN FSG +P SL + S SL + L SN +G + +
Sbjct: 328 SGELPMDTLLKMRGLKVLDL--SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 280 GIYPN--LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXX 337
P L + L N G++ P C +L L L+ N + G IP+ +G
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 338 XXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPK 397
GEIP ++ + L TL L+ ND++G IP + G IPK
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 398 QIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSM 457
IG L +L G IP ++G+ L LDL+ N G IPA + K QS
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTIPAAMFK----QSG 560
Query: 458 NLSHNNLSGE 467
++ N ++G+
Sbjct: 561 KIAANFIAGK 570
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 114/434 (26%), Positives = 166/434 (38%), Gaps = 62/434 (14%)
Query: 112 LDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLA 170
L++S N G I P P L L+ L +N +G IP+ + G C LT L
Sbjct: 249 LNISSNQFVGPIPP--LP---------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 297
Query: 171 LDGNFLSGPIPSSLG-------------------------NLSDLAVLAVASNQLSGEIP 205
L GN G +P G + L VL ++ N+ SGE+P
Sbjct: 298 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 206 ANIGTLS-KLTDLHLFINKLSG-LPPQVCKGGK--LINFTASFNHFSGPIPTSLKSCSSL 261
++ LS L L L N SG + P +C+ K L N F+G IP +L +CS L
Sbjct: 358 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG 321
+ L N L+G + G L + L N L+GE+ + + L L L N + G
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477
Query: 322 KIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXX 381
+IP+ + GEIP IG L L+ L L+ N SG IP E+G
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 382 XXXXXXXXXXXGPIP----KQIGELRDL----RXXXXXXXXXXGTIPFQIGNLVGLQDLL 433
G IP KQ G++ + GNL+ Q +
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 434 DLSYNSLTGEIPAQLEKLT-------------SLQSMNLSHNNLSGEIPXXXXXXXXXXX 480
N L+ P + S+ +++S+N LSG IP
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Query: 481 XXXXYNNLEGPLPD 494
+N++ G +PD
Sbjct: 658 LNLGHNDISGSIPD 671
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 148/341 (43%), Gaps = 40/341 (11%)
Query: 163 CKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFIN 222
C L LA+ GN +SG + S +L L V+SN S IP +G S L L + N
Sbjct: 174 CGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 230
Query: 223 KLSG---LPPQVCKGGKLINFTASFNHFSGPIP-TSLKSCSSLYRVRLESNELTGDLEQD 278
KLSG C KL+N ++ N F GPIP LKS L + L N+ TG++ D
Sbjct: 231 KLSGDFSRAISTCTELKLLNISS--NQFVGPIPPLPLKS---LQYLSLAENKFTGEIP-D 284
Query: 279 F--GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE-IGXXXXXXX 335
F G LT +DLS N G V P +G C L L L+ N+ G++P + +
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 336 XXXXXXXXXGEIPAQIGNLT-ELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGP 394
GE+P + NL+ L TL L+ N+ SGPI +
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN---------------- 388
Query: 395 IPKQIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL 454
PK L+ G IP + N L L LS+N L+G IP+ L L+ L
Sbjct: 389 -PKNT-----LQELYLQNNGFTGKIPPTLSNCSELVSL-HLSFNYLSGTIPSSLGSLSKL 441
Query: 455 QSMNLSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPLPDG 495
+ + L N L GEIP +N+L G +P G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%)
Query: 150 NMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIG 209
NMLSG IP+EIG+ L +L L N +SG IP +G+L L +L ++SN+L G IP +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 210 TLSKLTDLHLFINKLSGLPPQV 231
L+ LT++ L N LSG P++
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEM 720
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 109 VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTL 168
++ L++ N+++G I PD+ + L GL L N L GRIP+ + +LT
Sbjct: 655 LFILNLGHNDISGSI-----PDE----VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 169 LALDGNFLSGPIP 181
+ L N LSGPIP
Sbjct: 706 IDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 158/385 (41%), Gaps = 37/385 (9%)
Query: 112 LDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLAL 171
LD+S NN +G I P L + KN L+ LQ+N +G+IP + NC L L L
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNT-------LQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 172 DGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV 231
N+LSG IPSSLG+LS L L + N L GEIP + + L L L
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL------------ 473
Query: 232 CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLS 291
FN +G IP+ L +C++L + L +N LTG++ + G NL + LS
Sbjct: 474 -----------DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQI 351
N G + + G C+ L L L N G IPA + G+ I
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYI 578
Query: 352 GNLTELSTLSLNGN--DISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXX 409
N GN + G E++ G +
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 410 XXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
G IP +IG++ L +L+L +N ++G IP ++ L L ++LS N L G IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 470 XXXXXXXXXXXXXXXYNNLEGPLPD 494
NNL GP+P+
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 178/430 (41%), Gaps = 61/430 (14%)
Query: 71 IVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPD 130
++ + G + + ++ ++G D+D S NL F LDVS NN + GI
Sbjct: 172 VLSDGCGELKHLAISGNKISG---DVDVSRCVNL-EF----LDVSSNNFSTGI------- 216
Query: 131 DKNQPMTG-LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSD 189
P G L++ + N LSG I C L LL + N GPIP L
Sbjct: 217 ----PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 190 LAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQV----------------- 231
L L++A N+ +GEIP + G LT L L N G P
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 232 -----------CKGGKLINFTASFNHFSGPIPTSLKSCS-SLYRVRLESNELTGDLEQDF 279
+G K+++ SFN FSG +P SL + S SL + L SN +G + +
Sbjct: 331 SGELPMDTLLKMRGLKVLDL--SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 280 GIYPN--LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXX 337
P L + L N G++ P C +L L L+ N + G IP+ +G
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 338 XXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPK 397
GEIP ++ + L TL L+ ND++G IP + G IPK
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 398 QIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSM 457
IG L +L G IP ++G+ L LDL+ N G IPA + K QS
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTIPAAMFK----QSG 563
Query: 458 NLSHNNLSGE 467
++ N ++G+
Sbjct: 564 KIAANFIAGK 573
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 114/434 (26%), Positives = 166/434 (38%), Gaps = 62/434 (14%)
Query: 112 LDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLA 170
L++S N G I P P+ L L L +N +G IP+ + G C LT L
Sbjct: 252 LNISSNQFVGPIPPL--------PLKSLQYLS---LAENKFTGEIPDFLSGACDTLTGLD 300
Query: 171 LDGNFLSGPIPSSLG-------------------------NLSDLAVLAVASNQLSGEIP 205
L GN G +P G + L VL ++ N+ SGE+P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 206 ANIGTLS-KLTDLHLFINKLSG-LPPQVCKGGK--LINFTASFNHFSGPIPTSLKSCSSL 261
++ LS L L L N SG + P +C+ K L N F+G IP +L +CS L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG 321
+ L N L+G + G L + L N L+GE+ + + L L L N + G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 322 KIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXX 381
+IP+ + GEIP IG L L+ L L+ N SG IP E+G
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 382 XXXXXXXXXXXGPIP----KQIGELRDL----RXXXXXXXXXXGTIPFQIGNLVGLQDLL 433
G IP KQ G++ + GNL+ Q +
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 434 DLSYNSLTGEIPAQLEKLT-------------SLQSMNLSHNNLSGEIPXXXXXXXXXXX 480
N L+ P + S+ +++S+N LSG IP
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 481 XXXXYNNLEGPLPD 494
+N++ G +PD
Sbjct: 661 LNLGHNDISGSIPD 674
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 148/341 (43%), Gaps = 40/341 (11%)
Query: 163 CKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFIN 222
C L LA+ GN +SG + S +L L V+SN S IP +G S L L + N
Sbjct: 177 CGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233
Query: 223 KLSG---LPPQVCKGGKLINFTASFNHFSGPIP-TSLKSCSSLYRVRLESNELTGDLEQD 278
KLSG C KL+N ++ N F GPIP LKS L + L N+ TG++ D
Sbjct: 234 KLSGDFSRAISTCTELKLLNISS--NQFVGPIPPLPLKS---LQYLSLAENKFTGEIP-D 287
Query: 279 F--GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE-IGXXXXXXX 335
F G LT +DLS N G V P +G C L L L+ N+ G++P + +
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 336 XXXXXXXXXGEIPAQIGNLT-ELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGP 394
GE+P + NL+ L TL L+ N+ SGPI +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN---------------- 391
Query: 395 IPKQIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL 454
PK L+ G IP + N L L LS+N L+G IP+ L L+ L
Sbjct: 392 -PKNT-----LQELYLQNNGFTGKIPPTLSNCSELVSL-HLSFNYLSGTIPSSLGSLSKL 444
Query: 455 QSMNLSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPLPDG 495
+ + L N L GEIP +N+L G +P G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%)
Query: 150 NMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIG 209
NMLSG IP+EIG+ L +L L N +SG IP +G+L L +L ++SN+L G IP +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 210 TLSKLTDLHLFINKLSGLPPQV 231
L+ LT++ L N LSG P++
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEM 723
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 109 VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTL 168
++ L++ N+++G I PD+ + L GL L N L GRIP+ + +LT
Sbjct: 658 LFILNLGHNDISGSI-----PDE----VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 169 LALDGNFLSGPIP 181
+ L N LSGPIP
Sbjct: 709 IDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 24/299 (8%)
Query: 30 ETEALLKWKETLVNQSIVQSWVIPAXXXXXXXXXXXCRWSGIVCNDAGSVTEINLANTGL 89
+ +ALL+ K+ L N + + SW +P W G++C+ +N N L
Sbjct: 7 DKQALLQIKKDLGNPTTLSSW-LPTTDCCNRT------WLGVLCDTDTQTYRVN--NLDL 57
Query: 90 AGTLHDLDF---SSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFL 146
+G + SS NL + + NN+ G I P + L L
Sbjct: 58 SGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPA---------IAKLTQLHYLY 107
Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
+ +SG IP+ + K L L N LSG +P S+ +L +L + N++SG IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 207 NIGTLSKL-TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVR 265
+ G+ SKL T + + N+L+G P L S N G S + ++
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP 324
L N L DL + G+ NL +DL NR+ G + + + L L ++ N++ G+IP
Sbjct: 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 34/234 (14%)
Query: 240 FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV 299
+ N+ GPIP ++ + L+ + + ++G + L +D SYN L G +
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXX-XXXXXXXXXXXXGEIPAQIGNLTELS 358
P L + GN I G IP G G+IP NL L+
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 359 TLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGT 418
+ L+ N + G G+ ++I ++ +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNT---------------QKIHLAKN-------------S 232
Query: 419 IPFQIGNLVGLQ---DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
+ F +G VGL + LDL N + G +P L +L L S+N+S NNL GEIP
Sbjct: 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 81/217 (37%), Gaps = 8/217 (3%)
Query: 284 NLTYIDLSY----NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXX 339
NL Y++ Y N L G + P K +L L + ++ G IP +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 340 XXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXX-XGPIPKQ 398
G +P I +L L ++ +GN ISG IP+ G+ G IP
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 399 IGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMN 458
L +L G G+ Q + L+ NSL ++ ++ +L ++
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKI-HLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 459 LSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPLPDG 495
L +N + G +P +NNL G +P G
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 34/75 (45%)
Query: 419 IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXX 478
IP + NL L L N+L G IP + KLT L + ++H N+SG IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 479 XXXXXXYNNLEGPLP 493
YN L G LP
Sbjct: 128 VTLDFSYNALSGTLP 142
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 91 GTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDN 150
L +D ++F L R LD G P LF GL L+ LQDN
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELG---PGLF--------RGLAALQYLYLQDN 139
Query: 151 MLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210
L + + LT L L GN +S + L L L + N+++ P
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 211 LSKLTDLHLFINKLSGLPPQV--------------------CKGGKLINFTASFNHFSGP 250
L +L L+LF N LS LP + C+ L + F S
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259
Query: 251 IPTSL-KSCSSLYRVRLESNELTG 273
+P SL + + RL +N+L G
Sbjct: 260 VPCSLPQRLAGRDLKRLAANDLQG 283
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 91 GTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDN 150
L +D ++F L R LD G P LF GL L+ LQDN
Sbjct: 90 AQLRSVDPATFHGLGRLHTLHLDRCGLQELG---PGLF--------RGLAALQYLYLQDN 138
Query: 151 MLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210
L + + LT L L GN +S + L L L + N+++ P
Sbjct: 139 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 211 LSKLTDLHLFINKLSGLPPQV--------------------CKGGKLINFTASFNHFSGP 250
L +L L+LF N LS LP + C+ L + F S
Sbjct: 199 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 258
Query: 251 IPTSL-KSCSSLYRVRLESNELTG 273
+P SL + + RL +N+L G
Sbjct: 259 VPCSLPQRLAGRDLKRLAANDLQG 282
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
+ E+ +C L L +P L +++ VL + NQL AN S+LT
Sbjct: 4 VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLT 52
Query: 216 DLHLFINKLSGLPPQVCKGGKLIN-FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
L + N +S L P++C+ ++ N S + C++L + L SN +
Sbjct: 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Query: 275 LEQDFGIYPNLTYIDLSYNRL 295
F NL +DLS+N L
Sbjct: 113 KNNPFVKQKNLITLDLSHNGL 133
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 1/176 (0%)
Query: 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG 202
K LQ N LS + L LL L+ N L L +L L V N+L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSL 261
L L +L L N+L LPP+V KL + +N +SL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
+RL +N+L E F L + L N+L+ + +KL +L L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 75/195 (38%), Gaps = 28/195 (14%)
Query: 180 IPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGK-LI 238
IPS++ +D L + SN+LS L+KL L+L NKL LP + K K L
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE 298
+ N +L +RL+ N+L + F LTY+ L YN LQ
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELS 358
+ K L L L N + ++P LTEL
Sbjct: 149 PKGVFDKLTSLKELRLYNNQL-KRVPE-----------------------GAFDKLTELK 184
Query: 359 TLSLNGNDISGPIPE 373
TL L+ N + +PE
Sbjct: 185 TLKLDNNQLKR-VPE 198
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
+ E+ +C L L +P L +++ VL + NQL AN S+LT
Sbjct: 14 VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLT 62
Query: 216 DLHLFINKLSGLPPQVCKGGKLIN-FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
L + N +S L P++C+ ++ N S + C++L + L SN +
Sbjct: 63 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Query: 275 LEQDFGIYPNLTYIDLSYNRL 295
F NL +DLS+N L
Sbjct: 123 KNNPFVKQKNLITLDLSHNGL 143
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
I I LT L L+GN L+ +P+ + NLS+L VL ++ N+L+ +PA +G+ +L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 216 DLHLFINKLSGLP 228
+ F N ++ LP
Sbjct: 297 YFYFFDNMVTTLP 309
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 421 FQIGNLVGLQDLLDLSY---NSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466
F I + D L Y NSLT E+PA+++ L++L+ ++LSHN L+
Sbjct: 237 FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS 284
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
+ E+ +C L L +P L +++ VL + NQL AN S+LT
Sbjct: 9 VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLT 57
Query: 216 DLHLFINKLSGLPPQVCKGGKLIN-FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
L + N +S L P++C+ ++ N S + C++L + L SN +
Sbjct: 58 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Query: 275 LEQDFGIYPNLTYIDLSYNRL 295
F NL +DLS+N L
Sbjct: 118 KNNPFVKQKNLITLDLSHNGL 138
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 136 MTGLLGLKNFLLQDNMLSGRIPE----EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLA 191
GL L+ LQDN L +P+ ++GN LT L L GN + + L L
Sbjct: 124 FRGLAALQYLYLQDNNLQA-LPDNTFRDLGN---LTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 192 VLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV 231
L + N ++ P L +L L+LF N LS LP +V
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 3/187 (1%)
Query: 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASN-QLS 201
+ L N +S +C+ LT+L L N L+G ++ L+ L L ++ N QL
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIP-TSLKSCSS 260
P L L LHL L L P + +G + + ++ +P + + +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 261 LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320
L + L N + E F +L + L N + + +L L L N++
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL- 212
Query: 321 GKIPAEI 327
+PAE+
Sbjct: 213 SMLPAEV 219
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTD 216
P N LLT+L L+ N LS N L L++++N L + L +
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175
Query: 217 LHLFINKLSGLPPQVCKGGKLINFTASFNHFSG-PIPTSLK----SCSSLYRVR------ 265
L L N+L+ + + L + S+N S IP +++ S +S+ VR
Sbjct: 176 LQLSSNRLTHVDLSLIPS--LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233
Query: 266 -----LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSI 319
L+ N LT YP L +DLSYN L+ + + K Q+L L ++ N +
Sbjct: 234 LTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 20/181 (11%)
Query: 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTD 216
P N LLT+L L+ N LS N L L++++N L + L +
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 217 LHLFINKLSGLPPQVCKGGKLINFTASFNHFSG-PIPTSLK----SCSSLYRVR------ 265
L L N+L+ + + L + S+N S IP +++ S +S+ VR
Sbjct: 170 LQLSSNRLTHVDLSLIPS--LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227
Query: 266 -----LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320
L+ N LT YP L +DLSYN L+ + + K Q+L L ++ N +
Sbjct: 228 LTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
Query: 321 G 321
Sbjct: 286 A 286
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
LT L LD N L +L++L L +A+NQL+ L++L L+L N+L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 226 GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
LP V F+ + L +RL +N+L F NL
Sbjct: 121 SLPSGV------------FDRL-----------TKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 286 TYIDLSYNRLQGE---VSPKWGKCQKLTLLG 313
+ LS N+LQ + GK Q +TL G
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
LT L LD N L +L++L L +A+NQL+ L++L L+L N+L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 226 GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
LP V F+ + L +RL +N+L F NL
Sbjct: 121 SLPSGV------------FDRL-----------TKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 286 TYIDLSYNRLQGE---VSPKWGKCQKLTLLG 313
+ LS N+LQ + GK Q +TL G
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 174 NFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVC 232
N + P+ +SL L L NQL G++PA G+ KL L+L N+++ +P C
Sbjct: 316 NLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFC 373
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASN 198
+T L+L+G SG +P ++G L++L VLA+ S+
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 186 NLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP-QVCKGGKLINFTASF 244
N++D + L + + ++P+NI T L+L N+L LPP + +L A F
Sbjct: 7 NVADCSHLKLT--HIPDDLPSNI------TVLNLTHNQLRRLPPTNFTRYSQLAILDAGF 58
Query: 245 NHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWG 304
N S P + L + L+ NEL+ +Q F NLT +DL N + S +
Sbjct: 59 NSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFK 118
Query: 305 KCQKLTLLGLAGNSIGG 321
+ L L L+ N +
Sbjct: 119 NQKNLIKLDLSHNGLSS 135
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 25/151 (16%)
Query: 169 LALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP 228
LAL GN L S+L L++L L + NQL L+ L +L L N+L LP
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 229 PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYI 288
V KL N T + L N+L + F NLT +
Sbjct: 126 DGVF--DKLTNLT---------------------YLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 289 DLSYNRLQGEVSPKWGKCQKLTLLGLAGNSI 319
DLSYN+LQ + K +L L L N +
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
LT L L GN L L++L L + NQL L+ LT L+L N+L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 226 GLPPQVCKGGKLINFTA---SFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIY 282
LP V KL N T S+N + L +RL N+L + F
Sbjct: 147 SLPKGVF--DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 283 PNLTYIDLSYN 293
+L YI L N
Sbjct: 205 TSLQYIWLHDN 215
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
+P+E+ N K LTL+ L N +S S N++ L L ++ N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 216 DLHLFINKLSGLP 228
L L N +S +P
Sbjct: 106 LLSLHGNDISVVP 118
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
+T L LDGN + +P L N L ++ +++N++S + +++L L L N+L
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 226 GLPPQVCKGGK 236
+PP+ G K
Sbjct: 92 CIPPRTFDGLK 102
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 133 NQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAV 192
NQ + + L +L N L P K L LL+L GN +S + +LS L+
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
Query: 193 LAVASNQL 200
LA+ +N L
Sbjct: 131 LAIGANPL 138
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 251 IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLT 310
+P L + L + L +N ++ Q F L + LSYNRL+ + + L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 311 LLGLAGNSIG 320
LL L GN I
Sbjct: 106 LLSLHGNDIS 115
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
LT L LDGN ++ +SL L++LA L ++ N +S ++ L +LHL NKL
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 226 GLP 228
+P
Sbjct: 254 KVP 256
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 14/190 (7%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
P T LL L Q+N ++ + N K L L L N +S P + L L L
Sbjct: 52 PDTALLDL-----QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106
Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHF--SGPI 251
++ NQL E+P + L +L + N+++ + V G ++I N SG
Sbjct: 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 252 PTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311
+ + L +R+ +T + G+ P+LT + L N++ + L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 312 LGLAGNSIGG 321
LGL+ NSI
Sbjct: 221 LGLSFNSISA 230
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
LT L LDGN ++ +SL L++LA L ++ N +S ++ L +LHL NKL
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 226 GLP 228
+P
Sbjct: 254 KVP 256
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
LQ+N ++ + N K L L L N +S P + L L L ++ NQL E+P
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Query: 207 NIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHF--SGPIPTSLKSCSSLYR 263
+ L +L + N+++ + V G ++I N SG + + L
Sbjct: 118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 264 VRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG 321
+R+ +T + G+ P+LT + L N++ + L LGL+ NSI
Sbjct: 176 IRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Query: 169 LALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP 228
LAL GN L S+L L++L L + NQL L+ L +L L N+L LP
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 229 PQVCKGGKLINFTASF---NHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
V KL N T + N ++L R+ L++N+L E F L
Sbjct: 126 DGVF--DKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
+ L+ N+L+ + + LT + L N
Sbjct: 184 KQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 183 SLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA 242
+ NL +L +L + S+++ P L L +L L+ GL V K G N A
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY---FCGLSDAVLKDGYFRNLKA 124
Query: 243 ------SFNHF-SGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIY--PNLTYIDLSYN 293
S N S + S +SL + SN++ E + L++ L+ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 294 RLQGEVSPKWGKCQK------LTLLGLAGN 317
L VS WGKC L +L ++GN
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 253 TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGK-CQKLTL 311
+ L+ C +L + L SN + E F +L ++DLSYN L +S W K LT
Sbjct: 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTF 128
Query: 312 LGLAGN 317
L L GN
Sbjct: 129 LNLLGN 134
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 253 TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGK-CQKLTL 311
+ L+ C +L + L SN + E F +L ++DLSYN L +S W K LT
Sbjct: 44 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTF 102
Query: 312 LGLAGN 317
L L GN
Sbjct: 103 LNLLGN 108
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP------------- 181
P+ GL L N L +N L P I N K LT L L N +S P
Sbjct: 277 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 334
Query: 182 -------SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219
SSL NL+++ L+ NQ+S P + L+++T L L
Sbjct: 335 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP------------- 181
P+ GL L N L +N L P I N K LT L L N +S P
Sbjct: 278 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 335
Query: 182 -------SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219
SSL NL+++ L+ NQ+S P + L+++T L L
Sbjct: 336 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP------------- 181
P+ GL L N L +N L P I N K LT L L N +S P
Sbjct: 277 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFS 334
Query: 182 -------SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219
SSL NL+++ L+ NQ+S P + L+++T L L
Sbjct: 335 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP------------- 181
P+ GL L N L +N L P I N K LT L L N +S P
Sbjct: 278 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 335
Query: 182 -------SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219
SSL NL+++ L+ NQ+S P + L+++T L L
Sbjct: 336 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP------------- 181
P+ GL L N L +N L P I N K LT L L N +S P
Sbjct: 278 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFS 335
Query: 182 -------SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219
SSL NL+++ L+ NQ+S P + L+++T L L
Sbjct: 336 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP------------- 181
P+ GL L N L +N L P I N K LT L L N +S P
Sbjct: 282 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339
Query: 182 -------SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219
SSL NL+++ L+ NQ+S P + L+++T L L
Sbjct: 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP------------- 181
P+ GL L N L +N L P I N K LT L L N +S P
Sbjct: 281 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFA 338
Query: 182 -------SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219
SSL NL+++ L+ NQ+S P + L+++T L L
Sbjct: 339 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 181 PSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINF 240
P +L+ L L +A NQL+ L+KLT L L IN+L +P V K +
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTH 116
Query: 241 TASFN 245
FN
Sbjct: 117 IYLFN 121
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
+ GL +K L ++ P + L +L LD N ++ P L L++L L++
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 196 ASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSL 255
+ Q+S P + LSKLT L NK+S + P + LI N S P L
Sbjct: 159 GNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--L 213
Query: 256 KSCSSLYRVRLESNELT 272
+ S+L+ V L + +T
Sbjct: 214 ANTSNLFIVTLTNQTIT 230
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG 226
T L L+ N L L+ L L+++ NQ+ L+KLT L+L NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 227 LP 228
LP
Sbjct: 91 LP 92
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS 318
SS R+ LESN+L F LT + LS N++Q + K KLT+L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 319 I 319
+
Sbjct: 88 L 88
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
+ GL +K L ++ P + L +L LD N ++ P L L++L L++
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 164
Query: 196 ASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSL 255
+NQ++ P + LSKLT L NK+S + P + LI N S P L
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISP-LASLPNLIEVHLKDNQISDVSP--L 219
Query: 256 KSCSSLYRVRL 266
+ S+L+ V L
Sbjct: 220 ANLSNLFIVTL 230
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
LT L L N L L+ L LA+ +NQL L++L DL L+ N+L
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Query: 226 GLP 228
+P
Sbjct: 138 SVP 140
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 168 LLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLSG 226
+L L N ++ P +L +L L + SNQL G +P + +L++LT L L N+L+
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 227 LPPQVCKGGKLINFTASF---NHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYP 283
LP V +L++ F N + +P ++ + L + L+ N+L F
Sbjct: 103 LPSAV--FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 284 NLTY 287
+LT+
Sbjct: 160 SLTH 163
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464
LDLS L P L+SLQ +N+SHNN
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464
LDLS L P L+SLQ +N+SHNN
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464
LDLS L P L+SLQ +N+SHNN
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
Q+N L P+ + LT L L L P++ +LS L VL +ASNQL +P
Sbjct: 457 FQENFL----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPD 511
Query: 207 NIGTLSKLTDLH 218
G +LT L
Sbjct: 512 --GIFDRLTSLQ 521
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 252 PTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311
PT L ++L+ + L N L + F PNL Y+DLS N L + Q L +
Sbjct: 60 PTRL---TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 312 LGLAGNSI 319
L L N I
Sbjct: 117 LLLYNNHI 124
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 422 QIGNLVGLQDLLDLSYNSLTGE--IPAQLEKLTSLQSMNLSHN 462
++GNL LDLS+N + QL+ L+ LQ++NLSHN
Sbjct: 345 KLGNL----QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,480,180
Number of Sequences: 62578
Number of extensions: 468930
Number of successful extensions: 1223
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 263
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)