Query 035878
Match_columns 496
No_of_seqs 646 out of 4674
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8E-62 1.7E-66 546.0 36.2 467 1-493 1-469 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-52 5.2E-57 469.4 27.8 407 77-495 140-590 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.3E-39 5.1E-44 315.7 6.2 390 79-484 54-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.5E-39 7.5E-44 314.5 6.5 364 79-460 80-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1E-38 2.2E-43 298.9 -10.1 357 111-489 95-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.1E-37 2.5E-42 305.8 -4.3 342 137-487 29-373 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 8.2E-37 1.8E-41 299.8 -4.8 393 77-494 7-409 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 9.4E-36 2E-40 279.0 -10.6 364 78-465 69-541 (565)
9 KOG0618 Serine/threonine phosp 100.0 2.3E-31 5.1E-36 272.7 -4.2 375 79-487 47-487 (1081)
10 KOG0618 Serine/threonine phosp 100.0 3.1E-30 6.7E-35 264.5 -3.0 388 75-486 89-510 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.3E-25 2.8E-30 254.0 26.6 335 136-486 554-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.7E-24 3.8E-29 244.8 26.1 324 156-494 550-887 (1153)
13 KOG4237 Extracellular matrix p 99.9 8.3E-27 1.8E-31 218.8 -4.6 343 136-486 87-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 2.5E-23 5.5E-28 220.0 19.2 265 142-474 203-467 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 3.8E-23 8.2E-28 218.7 17.1 261 190-494 203-463 (788)
16 KOG4237 Extracellular matrix p 99.9 2.5E-25 5.5E-30 208.9 -3.9 341 142-489 69-477 (498)
17 PRK15370 E3 ubiquitin-protein 99.9 1.3E-21 2.8E-26 208.4 13.9 203 164-392 178-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.9 9.4E-22 2E-26 209.4 11.7 279 140-456 178-461 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 6.8E-22 1.5E-26 194.6 2.3 278 192-488 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 8.2E-22 1.8E-26 194.1 1.4 275 168-464 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.1E-19 2.4E-24 152.7 -6.3 184 281-471 31-218 (264)
22 KOG0617 Ras suppressor protein 99.7 3.4E-19 7.4E-24 149.7 -5.1 154 138-296 31-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.5E-15 3.2E-20 161.3 12.5 150 27-199 370-526 (623)
24 COG4886 Leucine-rich repeat (L 99.4 4.1E-13 9E-18 136.2 7.2 199 263-471 97-296 (394)
25 KOG0532 Leucine-rich repeat (L 99.4 1.1E-14 2.4E-19 143.6 -4.2 192 284-486 76-270 (722)
26 COG4886 Leucine-rich repeat (L 99.4 1.1E-12 2.5E-17 133.0 9.3 199 192-398 97-296 (394)
27 KOG0532 Leucine-rich repeat (L 99.3 3.9E-14 8.4E-19 139.8 -3.4 175 306-490 74-248 (722)
28 PLN03150 hypothetical protein; 99.3 4.8E-12 1E-16 134.7 9.3 113 380-493 419-532 (623)
29 KOG1909 Ran GTPase-activating 99.2 1.2E-12 2.6E-17 122.4 -0.6 198 255-464 88-310 (382)
30 KOG1259 Nischarin, modulator o 99.2 4.7E-12 1E-16 116.1 1.3 128 307-441 284-412 (490)
31 KOG1909 Ran GTPase-activating 99.1 5.2E-12 1.1E-16 118.3 -0.6 66 159-225 25-105 (382)
32 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.7E-16 112.4 1.6 132 329-467 282-414 (490)
33 KOG4658 Apoptotic ATPase [Sign 99.1 7.8E-11 1.7E-15 128.3 5.9 290 137-432 520-824 (889)
34 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.6E-16 117.3 -0.2 208 137-344 118-339 (505)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 102.2 4.5 126 329-483 17-147 (175)
36 KOG3207 Beta-tubulin folding c 99.1 2.7E-11 5.8E-16 116.6 -0.0 65 162-226 119-186 (505)
37 PF14580 LRR_9: Leucine-rich r 99.0 3.9E-10 8.4E-15 99.1 5.2 110 303-417 15-127 (175)
38 KOG0531 Protein phosphatase 1, 99.0 4.3E-11 9.2E-16 121.9 -2.4 263 141-417 50-319 (414)
39 KOG0531 Protein phosphatase 1, 98.9 1E-10 2.2E-15 119.2 -1.6 196 210-416 70-268 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.9 4.3E-10 9.3E-15 122.6 2.9 269 138-411 543-827 (889)
41 PF13855 LRR_8: Leucine rich r 98.8 3.1E-09 6.7E-14 76.8 3.9 59 141-199 2-60 (61)
42 PF08263 LRRNT_2: Leucine rich 98.8 3.9E-09 8.4E-14 70.0 4.0 40 28-74 2-43 (43)
43 PF13855 LRR_8: Leucine rich r 98.8 1.8E-09 4E-14 78.0 2.3 60 428-488 2-61 (61)
44 KOG1859 Leucine-rich repeat pr 98.5 3.2E-09 6.9E-14 108.3 -5.4 178 300-489 102-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.1E-09 4.6E-14 98.8 -6.6 84 213-296 186-273 (419)
46 KOG4579 Leucine-rich repeat (L 98.4 1.8E-08 3.9E-13 82.4 -1.7 134 333-472 29-166 (177)
47 KOG2120 SCF ubiquitin ligase, 98.4 9.3E-09 2E-13 94.7 -5.1 58 260-317 186-244 (419)
48 KOG4579 Leucine-rich repeat (L 98.4 4.7E-08 1E-12 80.0 -1.1 133 355-493 27-163 (177)
49 KOG1859 Leucine-rich repeat pr 98.3 7.1E-08 1.5E-12 98.7 -2.0 156 324-491 102-269 (1096)
50 KOG2982 Uncharacterized conser 98.3 1.6E-07 3.4E-12 86.7 -0.5 83 211-293 70-156 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.2 4.6E-07 1E-11 82.6 1.6 224 184-418 26-287 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.2 1.5E-07 3.3E-12 85.8 -1.7 223 160-394 26-287 (388)
53 KOG2982 Uncharacterized conser 98.1 7.7E-07 1.7E-11 82.2 0.1 229 255-484 41-287 (418)
54 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 54.3 3.4 36 165-201 2-37 (44)
55 PF12799 LRR_4: Leucine Rich r 98.0 8.7E-06 1.9E-10 54.0 3.6 36 453-489 2-37 (44)
56 PRK15386 type III secretion pr 97.7 7.3E-05 1.6E-09 74.1 6.4 136 303-463 48-188 (426)
57 PRK15386 type III secretion pr 97.7 0.00012 2.6E-09 72.6 7.8 136 327-487 48-188 (426)
58 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.7E-10 84.1 1.4 87 210-297 171-264 (699)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00032 7E-09 58.7 8.2 104 136-243 8-111 (129)
60 KOG3665 ZYG-1-like serine/thre 97.6 6.8E-05 1.5E-09 80.4 4.7 148 331-481 122-280 (699)
61 PF13306 LRR_5: Leucine rich r 97.5 0.00045 9.9E-09 57.8 8.1 37 302-339 30-66 (129)
62 KOG1644 U2-associated snRNP A' 97.5 0.00025 5.4E-09 62.5 6.0 60 165-226 43-102 (233)
63 KOG1644 U2-associated snRNP A' 97.4 0.00033 7.1E-09 61.7 5.4 82 143-226 45-127 (233)
64 KOG4341 F-box protein containi 97.3 8.1E-06 1.7E-10 79.0 -6.1 85 137-221 161-251 (483)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00051 1.1E-08 63.0 3.4 82 327-410 61-150 (260)
66 KOG4341 F-box protein containi 97.0 3.3E-05 7E-10 75.0 -4.8 274 188-464 138-438 (483)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00043 9.4E-09 63.5 1.8 109 347-460 35-151 (260)
68 KOG1947 Leucine rich repeat pr 96.7 0.00011 2.3E-09 76.6 -4.7 184 211-414 242-438 (482)
69 KOG2123 Uncharacterized conser 96.4 0.00058 1.3E-08 63.1 -1.2 99 379-482 19-123 (388)
70 KOG1947 Leucine rich repeat pr 96.3 0.0013 2.8E-08 68.5 0.6 111 257-367 186-307 (482)
71 KOG2123 Uncharacterized conser 96.2 0.00022 4.8E-09 65.7 -4.7 64 305-370 39-103 (388)
72 KOG4308 LRR-containing protein 96.1 0.00012 2.7E-09 75.0 -7.9 83 285-367 89-184 (478)
73 PF00560 LRR_1: Leucine Rich R 96.0 0.0031 6.7E-08 34.8 0.9 21 453-474 1-21 (22)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0079 1.7E-07 33.1 0.8 12 142-153 2-13 (22)
75 KOG4308 LRR-containing protein 95.1 0.00024 5.2E-09 73.0 -9.9 183 259-442 87-304 (478)
76 PF13504 LRR_7: Leucine rich r 93.1 0.057 1.2E-06 27.6 1.3 14 213-226 2-15 (17)
77 KOG0473 Leucine-rich repeat pr 92.3 0.006 1.3E-07 55.1 -5.1 88 374-465 37-124 (326)
78 smart00370 LRR Leucine-rich re 91.6 0.15 3.3E-06 29.1 2.0 22 211-232 1-22 (26)
79 smart00369 LRR_TYP Leucine-ric 91.6 0.15 3.3E-06 29.1 2.0 22 211-232 1-22 (26)
80 KOG0473 Leucine-rich repeat pr 91.1 0.0092 2E-07 53.9 -5.3 88 350-441 37-124 (326)
81 PF13516 LRR_6: Leucine Rich r 89.2 0.13 2.8E-06 28.8 0.2 20 452-471 2-21 (24)
82 smart00369 LRR_TYP Leucine-ric 88.2 0.46 9.9E-06 27.1 2.1 17 451-467 1-17 (26)
83 smart00370 LRR Leucine-rich re 88.2 0.46 9.9E-06 27.1 2.1 17 451-467 1-17 (26)
84 KOG3864 Uncharacterized conser 84.1 0.22 4.8E-06 44.3 -1.0 32 310-341 104-135 (221)
85 KOG3864 Uncharacterized conser 82.8 0.15 3.3E-06 45.3 -2.4 81 284-364 102-185 (221)
86 smart00364 LRR_BAC Leucine-ric 73.3 2.4 5.3E-05 24.2 1.4 18 212-229 2-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 70.4 3.8 8.2E-05 23.5 1.8 15 451-465 1-15 (26)
88 smart00368 LRR_RI Leucine rich 65.3 5.2 0.00011 23.3 1.7 15 452-466 2-16 (28)
89 KOG4242 Predicted myosin-I-bin 61.8 30 0.00065 35.2 7.2 109 308-416 355-481 (553)
90 KOG4242 Predicted myosin-I-bin 48.9 52 0.0011 33.6 6.6 20 76-95 164-183 (553)
91 KOG3763 mRNA export factor TAP 48.1 12 0.00025 38.8 2.0 13 380-392 271-283 (585)
92 smart00367 LRR_CC Leucine-rich 38.4 21 0.00046 20.1 1.3 13 451-463 1-13 (26)
93 KOG3763 mRNA export factor TAP 36.2 21 0.00046 37.0 1.8 64 401-467 216-285 (585)
94 TIGR00864 PCC polycystin catio 29.1 40 0.00087 42.1 2.7 33 409-442 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8e-62 Score=546.05 Aligned_cols=467 Identities=33% Similarity=0.529 Sum_probs=277.0
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCCC-CCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCE
Q 035878 1 MASQTKYPSLAYVAALAVLLCFCKASSLTETEALLKWKETLVN-QSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSV 79 (496)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~k~~~~~-~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~~~~~v 79 (496)
||...+..+.++++.+++++...+...++|++||++||+++.+ .+.+.+|... .|||.|.||+|+..++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~---------~~~c~w~gv~c~~~~~v 71 (968)
T PLN00113 1 MAKKGPQHCPYLIFMLFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSS---------ADVCLWQGITCNNSSRV 71 (968)
T ss_pred CCCCCCCCCChHHHHHHHHHHHccCCCHHHHHHHHHHHHhCCCCcccCCCCCCC---------CCCCcCcceecCCCCcE
Confidence 7776666666655544433333333355899999999999976 5678899642 68999999999988899
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878 80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE 159 (496)
Q Consensus 80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~ 159 (496)
++|+|++++++|.+++ .+..+++|+ +|+|++|.++|.+|..++ .++++|++|+|++|.+++.+|.
T Consensus 72 ~~L~L~~~~i~~~~~~-~~~~l~~L~-----~L~Ls~n~~~~~ip~~~~--------~~l~~L~~L~Ls~n~l~~~~p~- 136 (968)
T PLN00113 72 VSIDLSGKNISGKISS-AIFRLPYIQ-----TINLSNNQLSGPIPDDIF--------TTSSSLRYLNLSNNNFTGSIPR- 136 (968)
T ss_pred EEEEecCCCccccCCh-HHhCCCCCC-----EEECCCCccCCcCChHHh--------ccCCCCCEEECcCCccccccCc-
Confidence 9999999999999887 899999999 678888988888887753 3455555555555555554443
Q ss_pred CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc-ccccccCCCCCc
Q 035878 160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLI 238 (496)
Q Consensus 160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~ 238 (496)
+.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+ +|..+..+++|+
T Consensus 137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 334555555555555555555555555555555555555555555555555555555555555554 455555555555
Q ss_pred EEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc
Q 035878 239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS 318 (496)
Q Consensus 239 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 318 (496)
.|++++|++++.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878 319 IGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ 398 (496)
Q Consensus 319 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 398 (496)
+.+.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCC
Q 035878 399 IGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSL 478 (496)
Q Consensus 399 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 478 (496)
+..+++|+.|++++|++.+.+|..+..+++|+.+ ++++|++++.+|..+.+++.|++|++++|++++.+|..+..+++|
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV-RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE-ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 5444555555555555555555555555555554 555555554444445555555555555555554444444444444
Q ss_pred CEEeCcCCCCcccCC
Q 035878 479 VAVNLSYNNLEGPLP 493 (496)
Q Consensus 479 ~~L~ls~N~l~g~ip 493 (496)
+.|++++|++.|.+|
T Consensus 455 ~~L~L~~n~~~~~~p 469 (968)
T PLN00113 455 QMLSLARNKFFGGLP 469 (968)
T ss_pred cEEECcCceeeeecC
Confidence 444444444444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-52 Score=469.37 Aligned_cols=407 Identities=39% Similarity=0.593 Sum_probs=291.3
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCceeccc-------------------eEEccCCcccccCCCCCCCCCCCCCCC
Q 035878 77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVY-------------------ELDVSRNNMTGGIDPRLFPDDKNQPMT 137 (496)
Q Consensus 77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~-------------------~L~Ls~n~l~~~ip~~~~~~~~n~~l~ 137 (496)
.++++|+|++|.+.+.++. .++.+++|++|+++ +|++++|.+.+.+|.. ++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---------l~ 209 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE---------LG 209 (968)
T ss_pred CCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH---------Hc
Confidence 4678888888888887777 78888888865553 5555666665555554 55
Q ss_pred CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL 217 (496)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (496)
++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+.++++|++|
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 66677777777777776777777777777777777777766677677777777777777777666666666666677777
Q ss_pred ECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc
Q 035878 218 HLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ 296 (496)
Q Consensus 218 ~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 296 (496)
++++|.+.+ +|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 777666665 5666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred ccCCcCcCC------------------------CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhc
Q 035878 297 GEVSPKWGK------------------------CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIG 352 (496)
Q Consensus 297 ~~~~~~~~~------------------------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 352 (496)
+.+|..+.. +++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 555554444 44455555555555544454555555555555555555555555555
Q ss_pred CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccc
Q 035878 353 NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL 432 (496)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 432 (496)
.+++|++|++++|++.+.+|..+ ..++|++|++++|++++.+|..+.++++|++|++++|++.+.+|..+.++++|++|
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 55555555555555555555443 34677788888888888888888889999999999999999999999999999999
Q ss_pred ccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCCC
Q 035878 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495 (496)
Q Consensus 433 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 495 (496)
++++|+++|.+|..+.++++|++|+|++|+++|.+|..+..+++|+++++++|+++|.||..
T Consensus 529 -~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 529 -DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred -ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-39 Score=315.66 Aligned_cols=390 Identities=22% Similarity=0.226 Sum_probs=291.8
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 035878 79 VTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPE 158 (496)
Q Consensus 79 v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~ 158 (496)
..-+|++++.+... +-..++..-..+-..||+|+|.++..-+.. |.++++|+.+++.+|.++ .+|.
T Consensus 54 ~~lldcs~~~lea~----~~~~l~g~lp~~t~~LdlsnNkl~~id~~~---------f~nl~nLq~v~l~~N~Lt-~IP~ 119 (873)
T KOG4194|consen 54 TRLLDCSDRELEAI----DKSRLKGFLPSQTQTLDLSNNKLSHIDFEF---------FYNLPNLQEVNLNKNELT-RIPR 119 (873)
T ss_pred ceeeecCccccccc----cccccCCcCccceeeeeccccccccCcHHH---------HhcCCcceeeeeccchhh-hccc
Confidence 34455665555421 223333333334446888888887333322 677888888888888887 6777
Q ss_pred CCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccc-cccCCCCC
Q 035878 159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP-QVCKGGKL 237 (496)
Q Consensus 159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L 237 (496)
..+...+|+.|+|.+|.|+..-.+++..++.|+.|||+.|.++...-..|..=.++++|+|++|.|+.+-. .+..+.+|
T Consensus 120 f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 120 FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 66666678888888888877777778888888888888888875444566666788888888888887543 34456788
Q ss_pred cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317 (496)
Q Consensus 238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (496)
..|.|+.|+++...+..|+++++|+.|+|..|++.-.--..|..+++|+.|.+..|.+...-...|..+.++++|+|..|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 88888888888766677777888888888888876544556778888888888888887777777888888888888888
Q ss_pred cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChh
Q 035878 318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397 (496)
Q Consensus 318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 397 (496)
+++..-..++.++++|+.|++|+|.|...-+..+..+++|++|+|++|+++...+.+|..+..|++|.|++|.+...-..
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence 88877777888888888888888888877777778888888888888888877777788888888888888888766666
Q ss_pred hhhCCCCCCEEeccCccCCccCC---hhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhc
Q 035878 398 QIGELRDLRSLSLSQNNLNGTIP---FQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSS 474 (496)
Q Consensus 398 ~l~~~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 474 (496)
.|..+++|++|||++|.++..|- ..|..+++|+.| ++.+|++....-..|.++..|++|||.+|.+-.+.|++|..
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL-~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL-RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe-eecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 77788888888888888776554 336667888888 88888888444467888888888888888888777888887
Q ss_pred CCCCCEEeCc
Q 035878 475 MLSLVAVNLS 484 (496)
Q Consensus 475 l~~L~~L~ls 484 (496)
+ .|+.|.+.
T Consensus 439 m-~Lk~Lv~n 447 (873)
T KOG4194|consen 439 M-ELKELVMN 447 (873)
T ss_pred c-hhhhhhhc
Confidence 7 77777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-39 Score=314.48 Aligned_cols=364 Identities=25% Similarity=0.269 Sum_probs=188.3
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 035878 79 VTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPE 158 (496)
Q Consensus 79 v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~ 158 (496)
++.||+++|.+. .+....|.++++|+ .+++..|.++ .||.. .....+|+.|+|.+|.|+..-.+
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq-----~v~l~~N~Lt-~IP~f---------~~~sghl~~L~L~~N~I~sv~se 143 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQ-----EVNLNKNELT-RIPRF---------GHESGHLEKLDLRHNLISSVTSE 143 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcce-----eeeeccchhh-hcccc---------cccccceeEEeeeccccccccHH
Confidence 444555555554 22221344455555 4445555554 45543 12233455555555555554445
Q ss_pred CCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccC-CCCC
Q 035878 159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCK-GGKL 237 (496)
Q Consensus 159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~-l~~L 237 (496)
++..++.|+.||||.|.|+..--..|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++.+|...++ +++|
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 555555555555555555533333344444555555555555554455555555555555555555555554444 5555
Q ss_pred cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317 (496)
Q Consensus 238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (496)
+.|+|..|++.-.---.|.++++|+.|.|..|.+...-...|..+.++++|+|+.|++...-..++.++++|+.|+++.|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 55555555554322334455555555555555555444455555555555555555555444455555555555555555
Q ss_pred cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCCh-
Q 035878 318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIP- 396 (496)
Q Consensus 318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 396 (496)
.|...-++.+..+++|++|+|++|+++..-+..|..+..|++|+|++|.++..-...|..+++|++|||++|.++..+.
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 5555555555555555555555555554444455555555555555555554333444455555555555555543322
Q ss_pred --hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcc
Q 035878 397 --KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLS 460 (496)
Q Consensus 397 --~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 460 (496)
..|..+++|+.|++.+|++....-..|..+.+|++| ||.+|.|...-|+.|..+ .|++|.++
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L-dL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL-DLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCccccee-cCCCCcceeecccccccc-hhhhhhhc
Confidence 234445555555555555553223445555555555 555555555555555555 55555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-38 Score=298.92 Aligned_cols=357 Identities=27% Similarity=0.403 Sum_probs=261.4
Q ss_pred eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL 190 (496)
Q Consensus 111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 190 (496)
.++.|+|.++ .+|.. ++.+..|+.+++++|.+. .+|+.++.+..|+.++..+|+++ ..|..+.++.+|
T Consensus 95 ~l~vs~n~ls-~lp~~---------i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l 162 (565)
T KOG0472|consen 95 SLNVSHNKLS-ELPEQ---------IGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKL 162 (565)
T ss_pred HhhcccchHh-hccHH---------Hhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHH
Confidence 4455555555 55554 567778888888888887 66777888888888888888887 677778888888
Q ss_pred ceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC
Q 035878 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE 270 (496)
Q Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 270 (496)
..+++.+|++....|..+ +++.|++||...|-++.+|+.++.+.+|+.|++..|++. .+| .|..|..|+++++..|+
T Consensus 163 ~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQ 239 (565)
T ss_pred HHhhccccchhhCCHHHH-HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccH
Confidence 888888888874444444 488888888888888889999888899999999999887 455 68888899999999888
Q ss_pred CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc---
Q 035878 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI--- 347 (496)
Q Consensus 271 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--- 347 (496)
+.-...+....++++..||+.+|++. +.|..+..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+...-
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred HHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 87443344558889999999999987 67888888889999999999998 567788888 8999999888763110
Q ss_pred ----------------------------------ch----hhcCCCC--------------------------CCEEecc
Q 035878 348 ----------------------------------PA----QIGNLTE--------------------------LSTLSLN 363 (496)
Q Consensus 348 ----------------------------------~~----~l~~l~~--------------------------L~~L~Ls 363 (496)
+. ......+ .+..+++
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence 00 0011122 3334444
Q ss_pred CCcCc-----------------------cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCC
Q 035878 364 GNDIS-----------------------GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP 420 (496)
Q Consensus 364 ~n~l~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 420 (496)
.|++. +.+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|
T Consensus 397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence 44442 122333445556666666666665 55666666666666666666665 666
Q ss_pred hhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878 421 FQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 421 ~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 489 (496)
.++..+..++.+ -.++|++....|+.+.++.+|..|||.+|.+. .||..+++|++|++|++++|+|.
T Consensus 475 ~~~y~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHH-HhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 665555555555 55556666555666899999999999999998 88999999999999999999997
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-37 Score=305.81 Aligned_cols=342 Identities=27% Similarity=0.373 Sum_probs=166.3
Q ss_pred CCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCC-cccCccCCCCCCCC
Q 035878 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS-GEIPANIGTLSKLT 215 (496)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~ 215 (496)
..+++++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..+..++.|+.+++.+|++. ..+|..+..+..|+
T Consensus 29 ~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence 34444555555544444 44555555555555555555544 23333444555555555555442 22344444455555
Q ss_pred EEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878 216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL 295 (496)
Q Consensus 216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 295 (496)
.|||++|++..+|..+...+++..|++++|++.....+.+.++..|-.|+|++|++. .+|..+..+..|++|++++|.+
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 555555555555555555555555555555554322233344445555555555554 2333344445555555555544
Q ss_pred cccCCcCcCCCCCCCEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchh
Q 035878 296 QGEVSPKWGKCQKLTLLGLAGNSIG-GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374 (496)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 374 (496)
.-..-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|+.+..+++|+.|+||+|+++ .+.-.
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~ 263 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT 263 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc
Confidence 4332233334444555555544322 234445555555555555555554 44555555555555555555554 22223
Q ss_pred hcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCc-cCChhccCCccccccccccCCcCCccchhhhcCCCC
Q 035878 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNG-TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTS 453 (496)
Q Consensus 375 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~ 453 (496)
.+...+|++|++|+|+++ .+|.+++.++.|+.|.+.+|+++- -||..++.+..|+.+ ...+|.+. .+|+.+..|.+
T Consensus 264 ~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf-~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF-HAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH-Hhhccccc-cCchhhhhhHH
Confidence 333445555555555555 455555555555555555554431 245555555555555 55555554 45555555555
Q ss_pred CCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878 454 LQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487 (496)
Q Consensus 454 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 487 (496)
|+.|.|++|++. ..|+.+.-++.|+.||+..|+
T Consensus 341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 555555555554 345555555555555555553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=8.2e-37 Score=299.80 Aligned_cols=393 Identities=23% Similarity=0.366 Sum_probs=333.6
Q ss_pred CCEEEEEcCCCCCccc-cCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878 77 GSVTEINLANTGLAGT-LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR 155 (496)
Q Consensus 77 ~~v~~L~L~~~~l~g~-~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~ 155 (496)
.-|+.+|+++|.++|. +|. +...+++++. |.|....+. .+|.. ++.+.+|++|.+++|++. .
T Consensus 7 pFVrGvDfsgNDFsg~~FP~-~v~qMt~~~W-----LkLnrt~L~-~vPeE---------L~~lqkLEHLs~~HN~L~-~ 69 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPH-DVEQMTQMTW-----LKLNRTKLE-QVPEE---------LSRLQKLEHLSMAHNQLI-S 69 (1255)
T ss_pred ceeecccccCCcCCCCcCch-hHHHhhheeE-----EEechhhhh-hChHH---------HHHHhhhhhhhhhhhhhH-h
Confidence 4589999999999965 555 7888888884 555666665 78877 788999999999999998 5
Q ss_pred CCcCCCCCCCCCEEEccCCCCc-ccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccccc-C
Q 035878 156 IPEEIGNCKLLTLLALDGNFLS-GPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVC-K 233 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~-~ 233 (496)
+...+..++.|+.+++..|++. .-+|..+..+..|++|||++|++. ..|..+..-+++-+|+|++|+|..||..++ +
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHh
Confidence 5566889999999999999884 458889999999999999999998 889999999999999999999999998765 6
Q ss_pred CCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc-ccCCcCcCCCCCCCEE
Q 035878 234 GGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ-GEVSPKWGKCQKLTLL 312 (496)
Q Consensus 234 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L 312 (496)
+..|-.|++++|++. .+|+.+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+
T Consensus 149 LtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 788999999999997 57888999999999999999887554455667788889999886533 4678899999999999
Q ss_pred EccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878 313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS 392 (496)
Q Consensus 313 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 392 (496)
|++.|.+. ..|..+-.+++|+.|+||+|+++ .+....+...+|++|++|.|+++ .+|..+++++.|+.|.+.+|++.
T Consensus 228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 228 DLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred cccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 99999998 78999999999999999999998 55566777899999999999999 89999999999999999999986
Q ss_pred -CCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh
Q 035878 393 -GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471 (496)
Q Consensus 393 -~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 471 (496)
..+|+.++.+.+|+.+..++|.+. .+|+.++.|..|+.| .|++|++. .+|+.+.-++.|+.||+..|.-.-..|.-
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL-~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL-KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh-ccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 348999999999999999999997 999999999999999 99999998 79999999999999999999765333322
Q ss_pred hhcCCCCCEEeCcCC-----CCcccCCC
Q 035878 472 LSSMLSLVAVNLSYN-----NLEGPLPD 494 (496)
Q Consensus 472 l~~l~~L~~L~ls~N-----~l~g~ip~ 494 (496)
-..-++|+.-++.+- ++.|..|.
T Consensus 382 ~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 382 NDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred chhhhcceeeecceehhhHHhhccCCcc
Confidence 222245555444432 35665554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=9.4e-36 Score=279.03 Aligned_cols=364 Identities=29% Similarity=0.454 Sum_probs=304.7
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCceeccc------------------eEEccCCcccccCCCCCCCCCCCCCCCCC
Q 035878 78 SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVY------------------ELDVSRNNMTGGIDPRLFPDDKNQPMTGL 139 (496)
Q Consensus 78 ~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~------------------~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l 139 (496)
.++.+++..+.++ +.|+ +++.+..++.++.+ .++.++|.+. ++|++ ++.+
T Consensus 69 ~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~---------i~~~ 136 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDS---------IGRL 136 (565)
T ss_pred ceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCch---------HHHH
Confidence 4777888888776 5555 67777777777666 7899999998 67766 6778
Q ss_pred CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219 (496)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (496)
..|+.++..+|+++ ..|+.++++.+|..+++.+|.++...|..+ +++.|++||...|.++ .+|+.++.+.+|+.|++
T Consensus 137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence 89999999999998 778889999999999999999995555444 5999999999999887 78999999999999999
Q ss_pred CCCCCccccccccCCCCCcEEecCCCcccCCCCcc-cCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc
Q 035878 220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS-LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE 298 (496)
Q Consensus 220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 298 (496)
..|++..+| .+..+..|++++++.|.+. .+|.. ...++++.+||+..|++. ..|+.+..+.+|.+||+++|.++ .
T Consensus 214 ~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~ 289 (565)
T KOG0472|consen 214 RRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-S 289 (565)
T ss_pred hhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-c
Confidence 999999999 7888999999999999998 45544 458999999999999998 56888889999999999999998 5
Q ss_pred CCcCcCCCCCCCEEEccCCcccc-------------------------------------cCCc-ccC---CCC------
Q 035878 299 VSPKWGKCQKLTLLGLAGNSIGG-------------------------------------KIPA-EIG---SLS------ 331 (496)
Q Consensus 299 ~~~~~~~~~~L~~L~L~~n~l~~-------------------------------------~~~~-~l~---~l~------ 331 (496)
.|..++++ .|+.|-+.+|.+.. ..|. .+. .+.
T Consensus 290 Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 67789999 99999999996530 0000 000 000
Q ss_pred --------------------CCCEEEccCCcCc-----------------------cccchhhcCCCCCCEEeccCCcCc
Q 035878 332 --------------------QLVVLDLSSNQLS-----------------------GEIPAQIGNLTELSTLSLNGNDIS 368 (496)
Q Consensus 332 --------------------~L~~L~Ls~n~l~-----------------------~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (496)
-...++++.|++. +.+|..++.+++|..|++++|.+.
T Consensus 369 ~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 369 VSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred ccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh
Confidence 1445666666553 134455677899999999999998
Q ss_pred cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhh
Q 035878 369 GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL 448 (496)
Q Consensus 369 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l 448 (496)
.+|..++.+..|+.|+++.|+|. .+|..+.....++.+-.++|++....|..+.++.+|..| ||.+|.+. .+|..+
T Consensus 449 -~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL-DL~nNdlq-~IPp~L 524 (565)
T KOG0472|consen 449 -DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL-DLQNNDLQ-QIPPIL 524 (565)
T ss_pred -hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee-ccCCCchh-hCChhh
Confidence 78999999999999999999999 899998888889998889999985556669999999999 99999999 899999
Q ss_pred cCCCCCCEEEcccCcCC
Q 035878 449 EKLTSLQSMNLSHNNLS 465 (496)
Q Consensus 449 ~~l~~L~~L~Ls~N~l~ 465 (496)
++|++|++|++++|+|.
T Consensus 525 gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 525 GNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccceeEEEecCCccC
Confidence 99999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.3e-31 Score=272.68 Aligned_cols=375 Identities=27% Similarity=0.372 Sum_probs=241.9
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 035878 79 VTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPE 158 (496)
Q Consensus 79 v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~ 158 (496)
+..||++++.+. .+|. .+..+.+|+ .|+++.|.+. .+|.+ ..++.+|+++.|.+|.+. ..|.
T Consensus 47 L~~l~lsnn~~~-~fp~-~it~l~~L~-----~ln~s~n~i~-~vp~s---------~~~~~~l~~lnL~~n~l~-~lP~ 108 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPI-QITLLSHLR-----QLNLSRNYIR-SVPSS---------CSNMRNLQYLNLKNNRLQ-SLPA 108 (1081)
T ss_pred eEEeeccccccc-cCCc-hhhhHHHHh-----hcccchhhHh-hCchh---------hhhhhcchhheeccchhh-cCch
Confidence 788889888775 5555 677777887 5677788777 66654 567777888888887776 6777
Q ss_pred CCCCCCCCCEEEccCCCCcccCCccccCCCCC-------------------ceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878 159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL-------------------AVLAVASNQLSGEIPANIGTLSKLTDLHL 219 (496)
Q Consensus 159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (496)
.+..+++|++||+++|.+. .+|.-+..+..+ +.+++..|.+.+.++..+..++. .|||
T Consensus 109 ~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeec
Confidence 7888888888888888776 455444433333 33333334444444444433333 4666
Q ss_pred CCCCCccccccccC--------------------CCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcccccc
Q 035878 220 FINKLSGLPPQVCK--------------------GGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDF 279 (496)
Q Consensus 220 ~~n~l~~lp~~l~~--------------------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 279 (496)
.+|.+..+ .+.. .++++.|+.+.|.++...+. ..-.+|+.++++.|++++. |+++
T Consensus 186 r~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l-p~wi 260 (1081)
T KOG0618|consen 186 RYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL-PEWI 260 (1081)
T ss_pred ccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcc-hHHH
Confidence 66655420 1111 13344444444444321111 1124566666666666643 4666
Q ss_pred CCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhh--------
Q 035878 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-------- 351 (496)
Q Consensus 280 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-------- 351 (496)
+.+.+|+.++..+|+++ .+|..+...++|+.|++..|.+. -+|......+.|++|+|..|.+. ..|..+
T Consensus 261 ~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASL 337 (1081)
T ss_pred HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHH
Confidence 66677777777766664 44555555566666666666665 34445555666666666666654 222211
Q ss_pred ------------------cCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCc
Q 035878 352 ------------------GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQN 413 (496)
Q Consensus 352 ------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n 413 (496)
...+.|+.|.+.+|.++...-..+....+|+.|+|++|++.......+.+++.|++|+||+|
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 12345778888888888776667777888888888888888544456778888888888888
Q ss_pred cCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc-chhhhcCCCCCEEeCcCCC
Q 035878 414 NLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI-PASLSSMLSLVAVNLSYNN 487 (496)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~ 487 (496)
+++ .+|.++.++..|+.| ...+|++. ..| .+.+++.|+.+|+|.|+++... |.... -++|++||+++|.
T Consensus 418 kL~-~Lp~tva~~~~L~tL-~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLGRLHTL-RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhh-hhhHHHHhhhhhHHH-hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 887 788888888888888 88888887 667 6788888888888888887443 33332 2788888888886
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-30 Score=264.51 Aligned_cols=388 Identities=26% Similarity=0.291 Sum_probs=271.8
Q ss_pred CCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCC--------CCC---CCCCCCCCc
Q 035878 75 DAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDD--------KNQ---PMTGLLGLK 143 (496)
Q Consensus 75 ~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~--------~n~---~l~~l~~L~ 143 (496)
...+++.+.|.++.+. ..|. .+..+.+|+ +||+|.|.|. .+|..+..+. +|. .++... .+
T Consensus 89 ~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~-----~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-ik 159 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-SLPA-SISELKNLQ-----YLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS-IK 159 (1081)
T ss_pred hhhcchhheeccchhh-cCch-hHHhhhccc-----ccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc-ch
Confidence 3455666777766654 3444 666677776 6788888887 7777654443 221 122222 66
Q ss_pred EEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCC--------------------CCceEecccCcCCcc
Q 035878 144 NFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLS--------------------DLAVLAVASNQLSGE 203 (496)
Q Consensus 144 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--------------------~L~~L~L~~n~l~~~ 203 (496)
.+++..|.+.+.++..+..+.. .|||.+|.+.. ..+..+. +|+.|+.++|.++..
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL 234 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee
Confidence 6777777777766666666655 67777776651 1123333 444444444544422
Q ss_pred cCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCC
Q 035878 204 IPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYP 283 (496)
Q Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 283 (496)
.+. ..-.+|+++++++|+++.+|++++.+.+|+.+...+|+++ .+|..+....+|+.|....|.+. .+|......+
T Consensus 235 ~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~ 310 (1081)
T KOG0618|consen 235 DVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLK 310 (1081)
T ss_pred ccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccc
Confidence 111 1234677777777777777777777777777777777774 56666677777777777777776 3455556677
Q ss_pred CccEEEcccCcccccCCcCcCCCC-CCCEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEe
Q 035878 284 NLTYIDLSYNRLQGEVSPKWGKCQ-KLTLLGLAGNSIGGKIPA-EIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS 361 (496)
Q Consensus 284 ~L~~L~ls~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 361 (496)
.|++|++..|++....+..+.... .++.|..+.|++.. .|. .=...+.|+.|++.+|.++...-+.+.+.++|+.|+
T Consensus 311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 777777777777643333333332 25666666666652 221 112356799999999999988777889999999999
Q ss_pred ccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC
Q 035878 362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT 441 (496)
Q Consensus 362 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~ 441 (496)
|++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+.+++.|+.+ |+|.|+++
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l-DlS~N~L~ 465 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL-DLSCNNLS 465 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE-ecccchhh
Confidence 9999998555556788999999999999999 78999999999999999999998 778 88999999999 99999998
Q ss_pred cc-chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCC
Q 035878 442 GE-IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486 (496)
Q Consensus 442 ~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 486 (496)
.. +|.... -++|++||+++|.-.......|..++++...++.-|
T Consensus 466 ~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 466 EVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 54 444333 389999999999854455667888888888888777
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.3e-25 Score=254.04 Aligned_cols=335 Identities=21% Similarity=0.237 Sum_probs=169.6
Q ss_pred CCCCCCCcEEEccCCc------CcccCCcCCCCCC-CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccC
Q 035878 136 MTGLLGLKNFLLQDNM------LSGRIPEEIGNCK-LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI 208 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 208 (496)
|.++++|++|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..| ...+|++|++.+|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4455555555554332 2223444444432 3555555555544 444444 3455555555555554 344445
Q ss_pred CCCCCCCEEECCCCC-CccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccE
Q 035878 209 GTLSKLTDLHLFINK-LSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTY 287 (496)
Q Consensus 209 ~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 287 (496)
..+++|++|+++++. +..+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|..-+.+|..+ .+++|++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 555555555555543 22244 24445555555555554444555555555555555555554333444333 4555555
Q ss_pred EEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc-------cccchhhcCCCCCCEE
Q 035878 288 IDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS-------GEIPAQIGNLTELSTL 360 (496)
Q Consensus 288 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-------~~~~~~l~~l~~L~~L 360 (496)
|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++... ...+......++|+.|
T Consensus 709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 555555443333322 234555555555554 334332 3455555555443211 0111112233556666
Q ss_pred eccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcC
Q 035878 361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSL 440 (496)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l 440 (496)
++++|...+.+|..++++++|+.|++++|..-+.+|..+ ++++|++|++++|.....+|.. .+++++| +|++|.+
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L-~Ls~n~i 858 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL-NLSRTGI 858 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe-ECCCCCC
Confidence 666665555566666666666666666654333455443 4556666666665443344432 2345555 6666666
Q ss_pred CccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCC
Q 035878 441 TGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486 (496)
Q Consensus 441 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 486 (496)
+ .+|.++..+++|++|++++|+--..+|..+..+++|+.+++++|
T Consensus 859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 5 45666666666666666664333345555555666666666655
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.7e-24 Score=244.84 Aligned_cols=324 Identities=22% Similarity=0.200 Sum_probs=265.6
Q ss_pred CCcCCCCCCCCCEEEccCCC------CcccCCccccCCC-CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc
Q 035878 156 IPEEIGNCKLLTLLALDGNF------LSGPIPSSLGNLS-DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP 228 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp 228 (496)
.+.+|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|++..++
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc
Confidence 34568899999999997653 3345777777765 6999999999887 678777 5789999999999999999
Q ss_pred ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCC
Q 035878 229 PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK 308 (496)
Q Consensus 229 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 308 (496)
..+..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 9999999999999998876666774 8889999999999998777889999999999999999987666777665 7899
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCc-------cccchhhcCCCCC
Q 035878 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS-------GPIPEEIGALLNL 381 (496)
Q Consensus 309 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L 381 (496)
|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|++|++.++... ...+......++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 999999999766666643 468999999999987 667655 5789999999874321 1122223345789
Q ss_pred CEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEccc
Q 035878 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461 (496)
Q Consensus 382 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 461 (496)
+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.| ++++|.....+|.. .++|++|+|++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L-~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL-DLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE-ECCCCCcccccccc---ccccCEeECCC
Confidence 999999999888899999999999999999987666888766 78999999 99998765566653 36899999999
Q ss_pred CcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 462 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 462 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
|.++ .+|.++..+++|+.|++++|+--..+|.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 9998 7899999999999999999653334553
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=8.3e-27 Score=218.85 Aligned_cols=343 Identities=24% Similarity=0.251 Sum_probs=189.0
Q ss_pred CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccC-CCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCC
Q 035878 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDG-NFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL 214 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (496)
|+.+++||.|||++|.|+.+-|.+|..++.|..|-+.+ |+|+..-...|+++..|+.|.+.-|++.-...+.|..+++|
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 44455555555555555545555555554444443333 44543333344455555555555555444444444455555
Q ss_pred CEEECCCCCCccccc-cccCCCCCcEEecCCCcccC------------CCCcccCCCCC---------------------
Q 035878 215 TDLHLFINKLSGLPP-QVCKGGKLINFTASFNHFSG------------PIPTSLKSCSS--------------------- 260 (496)
Q Consensus 215 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~------------~~p~~l~~l~~--------------------- 260 (496)
..|.+.+|.+..++. .+..+..++.+.+..|.+.. ..|..++...-
T Consensus 167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c 246 (498)
T KOG4237|consen 167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC 246 (498)
T ss_pred chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence 555555555444444 23334444444444433110 01111111111
Q ss_pred -CcEE--E-ccCCCCCCccc-cccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCE
Q 035878 261 -LYRV--R-LESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVV 335 (496)
Q Consensus 261 -L~~L--~-L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 335 (496)
++.+ . .+.+...+..| ..|..+++|++|++++|.++++-+.+|.+...+++|.|..|++...-...|.++..|+.
T Consensus 247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 1111 1 11222222333 35677788888888888888777777777888888888888777666667777778888
Q ss_pred EEccCCcCccccchhhcCCCCCCEEeccCCcCccc-----cchhh-----------cCCCCCCEEEccCCcCCC---CCh
Q 035878 336 LDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP-----IPEEI-----------GALLNLDSLDLSMNRLSG---PIP 396 (496)
Q Consensus 336 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~-----------~~l~~L~~L~Ls~n~l~~---~~~ 396 (496)
|+|.+|+|+...|..|..+..|.+|++-.|.+.-. ..+|+ ++...++.++++...+.. ..|
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ 406 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGP 406 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCc
Confidence 88888888777777777777788887777665310 11111 112245555555554431 111
Q ss_pred hhh---------hCCCCCCE-EeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 397 KQI---------GELRDLRS-LSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 397 ~~l---------~~~~~L~~-L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
+.. ..++.+.+ ...|+..+. .+|..+. ..-.++ .+.+|.++ .+|.. .+.+| .+|+++|+++.
T Consensus 407 ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tel-yl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 407 EELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTEL-YLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred cccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHH-hcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 111 12233332 223333332 4443322 123456 89999998 77876 66788 89999999986
Q ss_pred ccchhhhcCCCCCEEeCcCC
Q 035878 467 EIPASLSSMLSLVAVNLSYN 486 (496)
Q Consensus 467 ~~p~~l~~l~~L~~L~ls~N 486 (496)
.--..|.++++|.+|-+|||
T Consensus 479 Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 479 LSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcccccchhhhheeEEecC
Confidence 66678899999999999987
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=2.5e-23 Score=220.01 Aligned_cols=265 Identities=29% Similarity=0.398 Sum_probs=149.7
Q ss_pred CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCC
Q 035878 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI 221 (496)
Q Consensus 142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (496)
-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 445555555555 3444443 24555555555555 2332 1244555555555554 23321 23445555555
Q ss_pred CCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCc
Q 035878 222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP 301 (496)
Q Consensus 222 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 301 (496)
|.++.+|.. .++|+.|++++|+++. +|. ..++|+.|++++|.+++ +|.
T Consensus 272 N~L~~Lp~l---------------------------p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~ 319 (788)
T PRK15387 272 NPLTHLPAL---------------------------PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA 319 (788)
T ss_pred Cchhhhhhc---------------------------hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC
Confidence 554444331 1344455555555542 222 12456666666666553 232
Q ss_pred CcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCC
Q 035878 302 KWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381 (496)
Q Consensus 302 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 381 (496)
. ..+|+.|++++|.+++ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|+++ .+|.. ..+|
T Consensus 320 l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L 384 (788)
T PRK15387 320 L---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGL 384 (788)
T ss_pred C---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---cccc
Confidence 1 1345566666666653 3321 1356777777777763 4432 245667777777776 34543 2467
Q ss_pred CEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEccc
Q 035878 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461 (496)
Q Consensus 382 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 461 (496)
+.|++++|++++ +|.. .++|+.|++++|+++ .+|... .+|+.| ++++|+++ .+|..+.++++|+.|+|++
T Consensus 385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L-~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSL-SVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhh-hhccCccc-ccChHHhhccCCCeEECCC
Confidence 777777777773 4432 256778888888877 456432 356666 88888887 6788788888888888888
Q ss_pred CcCCcccchhhhc
Q 035878 462 NNLSGEIPASLSS 474 (496)
Q Consensus 462 N~l~~~~p~~l~~ 474 (496)
|++++.+|..+..
T Consensus 455 N~Ls~~~~~~L~~ 467 (788)
T PRK15387 455 NPLSERTLQALRE 467 (788)
T ss_pred CCCCchHHHHHHH
Confidence 8888877776643
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=3.8e-23 Score=218.69 Aligned_cols=261 Identities=28% Similarity=0.336 Sum_probs=194.2
Q ss_pred CceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCC
Q 035878 190 LAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN 269 (496)
Q Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 269 (496)
-..|+++.+.++ .+|+.+. ++|+.|++.+|+++.+|.. .++|++|++++|+++. +|.. .++|+.|++++|
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence 445556665555 4454443 2566666666666665542 3566666666666663 3432 357888999999
Q ss_pred CCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch
Q 035878 270 ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA 349 (496)
Q Consensus 270 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 349 (496)
.++. +|.. .++|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|.
T Consensus 273 ~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 273 PLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred chhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence 8874 3432 3679999999999984 454 24789999999999985 4442 2468899999999984 554
Q ss_pred hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccc
Q 035878 350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGL 429 (496)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 429 (496)
. ..+|++|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|... ++|
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s~L 404 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP---SEL 404 (788)
T ss_pred c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc---cCC
Confidence 2 2589999999999994 5643 3578899999999994 6653 357999999999998 466543 568
Q ss_pred cccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 430 QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 430 ~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
+.| ++++|+++ .+|... .+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|.
T Consensus 405 ~~L-dLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 405 KEL-MVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CEE-EccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 888 99999999 477643 46889999999998 7899999999999999999999998764
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2.5e-25 Score=208.92 Aligned_cols=341 Identities=20% Similarity=0.207 Sum_probs=254.2
Q ss_pred CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEeccc-CcCCcccCccCCCCCCCCEEECC
Q 035878 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS-NQLSGEIPANIGTLSKLTDLHLF 220 (496)
Q Consensus 142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~ 220 (496)
-..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|++|..+++|..|.+.+ |+|+..-...|+++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 56789999999988889999999999999999999999999999999999888877 89986666789999999999999
Q ss_pred CCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCC------------CccccccCCCC----
Q 035878 221 INKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT------------GDLEQDFGIYP---- 283 (496)
Q Consensus 221 ~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~---- 283 (496)
-|++.-++ +.+..++++..|.+..|.+...-...+..+..++.+.+..|.+. ...|..++...
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 99998844 45677899999999999987544457888999999999888732 11111222111
Q ss_pred ------------------CccEE--Ec-ccCcccccCC-cCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878 284 ------------------NLTYI--DL-SYNRLQGEVS-PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341 (496)
Q Consensus 284 ------------------~L~~L--~l-s~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 341 (496)
.++.+ .+ +.+...+..| ..|..+++|++|++++|+++++-+.+|.+...+++|.|..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 11111 11 1122222323 24778899999999999999999999999999999999999
Q ss_pred cCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCC-----Chhhh-----------hCCCCC
Q 035878 342 QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP-----IPKQI-----------GELRDL 405 (496)
Q Consensus 342 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~l-----------~~~~~L 405 (496)
++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|.+-.|.+.-. +-+++ +....+
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~ 388 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFV 388 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchh
Confidence 99866666788999999999999999988899999999999999988875311 01111 122346
Q ss_pred CEEeccCccCCc---cCChh---------ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhh
Q 035878 406 RSLSLSQNNLNG---TIPFQ---------IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLS 473 (496)
Q Consensus 406 ~~L~Ls~n~l~~---~~p~~---------~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 473 (496)
+.+.+++..+.. ..|++ -..++-+..+...|+..+. .+|..+. ..-.+|.+.+|.++ .+|..
T Consensus 389 ~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~-- 462 (498)
T KOG4237|consen 389 RQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE-- 462 (498)
T ss_pred ccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--
Confidence 677777664431 12222 2234555555466666665 5665543 24568999999998 77776
Q ss_pred cCCCCCEEeCcCCCCc
Q 035878 474 SMLSLVAVNLSYNNLE 489 (496)
Q Consensus 474 ~l~~L~~L~ls~N~l~ 489 (496)
.+.+| .+|+|+|+++
T Consensus 463 ~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 463 LLRSL-LLDLSNNRIS 477 (498)
T ss_pred HHhhh-hcccccCcee
Confidence 56778 9999999975
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=1.3e-21 Score=208.36 Aligned_cols=203 Identities=25% Similarity=0.416 Sum_probs=112.9
Q ss_pred CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878 164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS 243 (496)
Q Consensus 164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~ 243 (496)
.+...|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 35678888888877 4666553 57888888888887 4565443 578888888888887776543 367777777
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccC
Q 035878 244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI 323 (496)
Q Consensus 244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 323 (496)
+|++. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 77766 4555443 356666666666663 344332 356666666666553 232221 245555555555542 2
Q ss_pred CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878 324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS 392 (496)
Q Consensus 324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 392 (496)
|..+ .++|++|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 3222 1345555555555442 333321 34444444444444 2333321 34444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=9.4e-22 Score=209.36 Aligned_cols=279 Identities=24% Similarity=0.385 Sum_probs=205.0
Q ss_pred CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219 (496)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (496)
.+...|+++++.++ .+|..+. +.|+.|+|++|.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35788999999888 4666553 57999999999998 5676654 58999999999988 5676553 47999999
Q ss_pred CCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878 220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV 299 (496)
Q Consensus 220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 299 (496)
++|++..+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 9999999888764 58999999999988 4676554 589999999999885 444332 578999999999884 4
Q ss_pred CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL 379 (496)
Q Consensus 300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 379 (496)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 5433 3689999999999885 565553 68999999999988 5666553 68999999999998 5666654 3
Q ss_pred CCCEEEccCCcCCCCChhhh----hCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc-cchhhhcCCCCC
Q 035878 380 NLDSLDLSMNRLSGPIPKQI----GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG-EIPAQLEKLTSL 454 (496)
Q Consensus 380 ~L~~L~Ls~n~l~~~~~~~l----~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~-~~p~~l~~l~~L 454 (496)
.|+.|++++|++. .+|..+ ..++.+..|++.+|+++. ..+..++.+ ++.+.+.| .++..++.+.++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L--l~s~~~~gp~i~~~~~~~~~l 459 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL--MSSVGYQGPRVLFAMGDFSIV 459 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh--hhcccccCCcccccccccccc
Confidence 6889999999988 455443 445778889999998862 334445444 23344443 334444444444
Q ss_pred CE
Q 035878 455 QS 456 (496)
Q Consensus 455 ~~ 456 (496)
+.
T Consensus 460 ~~ 461 (754)
T PRK15370 460 RV 461 (754)
T ss_pred cc
Confidence 43
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=6.8e-22 Score=194.62 Aligned_cols=278 Identities=26% Similarity=0.303 Sum_probs=167.5
Q ss_pred eEecccCcCC-cccCccCCCCCCCCEEECCCCCCcc-----ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEE
Q 035878 192 VLAVASNQLS-GEIPANIGTLSKLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVR 265 (496)
Q Consensus 192 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 265 (496)
.|+|..+.++ ...+..+..++.|++++++++.++. ++..+...+.+++++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 4666667666 3344455566778888888887744 45455555666666666655542 00000
Q ss_pred ccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCC---CCCEEEccCCcccc----cCCcccCCC-CCCCEEE
Q 035878 266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ---KLTLLGLAGNSIGG----KIPAEIGSL-SQLVVLD 337 (496)
Q Consensus 266 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~---~L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~ 337 (496)
..++..+..+++|++|++++|.+.+..+..+..+. +|++|++++|++++ .+...+..+ ++|++|+
T Consensus 71 -------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 71 -------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred -------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 01122333344555555555554433333332222 36666666665552 122233444 6777777
Q ss_pred ccCCcCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCC
Q 035878 338 LSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDL 405 (496)
Q Consensus 338 Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L 405 (496)
+++|.+++. ++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+.+. +...+..+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 777777632 334455667788888887777642 233344556788888888877643 23345567788
Q ss_pred CEEeccCccCCccCChhccC-----CccccccccccCCcCCc----cchhhhcCCCCCCEEEcccCcCCcc----cchhh
Q 035878 406 RSLSLSQNNLNGTIPFQIGN-----LVGLQDLLDLSYNSLTG----EIPAQLEKLTSLQSMNLSHNNLSGE----IPASL 472 (496)
Q Consensus 406 ~~L~Ls~n~l~~~~p~~~~~-----l~~L~~LL~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l 472 (496)
++|++++|.+++.....+.. .+.|+++ ++++|.+++ .+...+..+++|+++++++|.++.. +...+
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L-~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTL-SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEE-EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 88888888877533333322 3678888 888888872 3455667778899999999999855 44455
Q ss_pred hcC-CCCCEEeCcCCCC
Q 035878 473 SSM-LSLVAVNLSYNNL 488 (496)
Q Consensus 473 ~~l-~~L~~L~ls~N~l 488 (496)
... +.|+.+|+.+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 555 6889999988875
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=8.2e-22 Score=194.05 Aligned_cols=275 Identities=23% Similarity=0.289 Sum_probs=167.6
Q ss_pred EEEccCCCCc-ccCCccccCCCCCceEecccCcCCcc----cCccCCCCCCCCEEECCCCCCcc-------ccccccCCC
Q 035878 168 LLALDGNFLS-GPIPSSLGNLSDLAVLAVASNQLSGE----IPANIGTLSKLTDLHLFINKLSG-------LPPQVCKGG 235 (496)
Q Consensus 168 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~-------lp~~l~~l~ 235 (496)
.|+|..+.++ ...+..+..+.+|++|+++++.++.. ++..+...+++++++++++.+.+ ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5788888887 44556667788899999999998642 55667778899999999988763 223334445
Q ss_pred CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc----cCCcCcCCC-CCCC
Q 035878 236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG----EVSPKWGKC-QKLT 310 (496)
Q Consensus 236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~~-~~L~ 310 (496)
+|++|++++|.+.+..+..+..+.. . ++|++|++++|.+.+ .+...+..+ ++|+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 5555555555554333333322222 1 225555555554442 111223333 5566
Q ss_pred EEEccCCccccc----CCcccCCCCCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCC
Q 035878 311 LLGLAGNSIGGK----IPAEIGSLSQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGAL 378 (496)
Q Consensus 311 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l 378 (496)
.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 666666665532 233445556677777777776632 233445556777777777777533 23345566
Q ss_pred CCCCEEEccCCcCCCCChhhhhC-----CCCCCEEeccCccCCc----cCChhccCCccccccccccCCcCCcc----ch
Q 035878 379 LNLDSLDLSMNRLSGPIPKQIGE-----LRDLRSLSLSQNNLNG----TIPFQIGNLVGLQDLLDLSYNSLTGE----IP 445 (496)
Q Consensus 379 ~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~LL~Ls~N~l~~~----~p 445 (496)
++|++|++++|.+++.....+.. .+.|++|++++|.+++ .+...+..++.|+++ ++++|.++.. +.
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l-~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL-DLRGNKFGEEGAQLLA 299 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE-ECCCCCCcHHHHHHHH
Confidence 77888888887777532222221 3678888888887762 233445566778888 8888888754 44
Q ss_pred hhhcCC-CCCCEEEcccCcC
Q 035878 446 AQLEKL-TSLQSMNLSHNNL 464 (496)
Q Consensus 446 ~~l~~l-~~L~~L~Ls~N~l 464 (496)
..+... +.|+++++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 444444 6788888888764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-19 Score=152.67 Aligned_cols=184 Identities=31% Similarity=0.512 Sum_probs=124.0
Q ss_pred CCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEE
Q 035878 281 IYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL 360 (496)
Q Consensus 281 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 360 (496)
.+.+++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4456667777777776 45566777777777777777776 56667777777777777777776 667777777777777
Q ss_pred eccCCcCcc-ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCc
Q 035878 361 SLNGNDISG-PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNS 439 (496)
Q Consensus 361 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~ 439 (496)
|+.+|++.. ..|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+- +.|..++.++.|+++ .+++|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel-hiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL-HIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH-hcccce
Confidence 777776653 35666666677777777777776 56666777777777777777765 667777777777777 777777
Q ss_pred CCccchhhhcCCCC---CCEEEcccCcCCcccchh
Q 035878 440 LTGEIPAQLEKLTS---LQSMNLSHNNLSGEIPAS 471 (496)
Q Consensus 440 l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~~p~~ 471 (496)
++ .+|..++++.- =+.+.+.+|.....|.+.
T Consensus 185 l~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 185 LT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred ee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 77 55655555332 234445556555444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.4e-19 Score=149.71 Aligned_cols=154 Identities=27% Similarity=0.420 Sum_probs=96.5
Q ss_pred CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL 217 (496)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (496)
++.+.+.|.|++|.++ .+|..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455666667777776 55556777777777777777776 56777777777777777777766 667777777777777
Q ss_pred ECCCCCCcc--ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878 218 HLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL 295 (496)
Q Consensus 218 ~L~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 295 (496)
|+.+|++.. +|..++.+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 777777665 6665655566666666666554 34555555555555555555443 2344444455555555555554
Q ss_pred c
Q 035878 296 Q 296 (496)
Q Consensus 296 ~ 296 (496)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 4
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=161.33 Aligned_cols=150 Identities=31% Similarity=0.481 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC-CCCccccceeeCC---C--CCEEEEEcCCCCCccccCCCCCCC
Q 035878 27 SLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTT-PSPCRWSGIVCND---A--GSVTEINLANTGLAGTLHDLDFSS 100 (496)
Q Consensus 27 ~~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~-~~~C~w~gv~c~~---~--~~v~~L~L~~~~l~g~~~~~~l~~ 100 (496)
..+|.+||+++|+++.+.. ..+|.++ .| +.+|.|.||.|.. . ..|+.|+|+++++.|.++. .++.
T Consensus 370 ~~~~~~aL~~~k~~~~~~~-~~~W~g~-------~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~ 440 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLPL-RFGWNGD-------PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISK 440 (623)
T ss_pred CchHHHHHHHHHHhcCCcc-cCCCCCC-------CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhC
Confidence 3478999999999986532 2478641 01 1123799999952 1 2477777777777777766 5666
Q ss_pred CCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccC
Q 035878 101 FPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPI 180 (496)
Q Consensus 101 l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 180 (496)
+++|+ +|+|++|.+.|.+|.. ++++++|++|+|++|.++|.+|+.++++++|++|+|++|.++|.+
T Consensus 441 L~~L~-----~L~Ls~N~l~g~iP~~---------~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i 506 (623)
T PLN03150 441 LRHLQ-----SINLSGNSIRGNIPPS---------LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506 (623)
T ss_pred CCCCC-----EEECCCCcccCcCChH---------HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence 66655 4555666666555554 455555555555555555555555555555555555555555555
Q ss_pred CccccCC-CCCceEecccCc
Q 035878 181 PSSLGNL-SDLAVLAVASNQ 199 (496)
Q Consensus 181 p~~l~~l-~~L~~L~L~~n~ 199 (496)
|..+..+ .++..+++.+|.
T Consensus 507 P~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 507 PAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ChHHhhccccCceEEecCCc
Confidence 5555432 234445555443
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=4.1e-13 Score=136.18 Aligned_cols=199 Identities=38% Similarity=0.593 Sum_probs=115.8
Q ss_pred EEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCC-CCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878 263 RVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ-KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341 (496)
Q Consensus 263 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 341 (496)
.+++..+.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666532222 2333456777777777766 3344444443 6777777777666 34445566666777777777
Q ss_pred cCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCCh
Q 035878 342 QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF 421 (496)
Q Consensus 342 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~ 421 (496)
++. .+|...+..++|+.|++++|+++ .+|........|+++.+++|++. .++..+..+..+..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 666 44444445666666666666666 45554444555666666666433 34444556666666666666654 3345
Q ss_pred hccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh
Q 035878 422 QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471 (496)
Q Consensus 422 ~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 471 (496)
.++.++.++.+ ++++|.++ .++. ++.+.++++|++++|.++...|..
T Consensus 250 ~~~~l~~l~~L-~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETL-DLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhcccccccee-cccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 55666666666 66666666 3333 566666666666666666554443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=1.1e-14 Score=143.58 Aligned_cols=192 Identities=34% Similarity=0.508 Sum_probs=132.2
Q ss_pred CccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEecc
Q 035878 284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLN 363 (496)
Q Consensus 284 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 363 (496)
.-...|++.|++. ++|..+..+-.|+.+.+..|.+. .+|..+.++..|+++|++.|+++ ..|..+..++ |+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3344566666665 55666666666777777777666 56667777777777777777776 5666666665 7777777
Q ss_pred CCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCcc
Q 035878 364 GNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE 443 (496)
Q Consensus 364 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~ 443 (496)
+|+++ .+|..++....|..||.+.|++. .+|..++.+.+|+.|++..|++. .+|..++. -.|..| |+|+|+++ .
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~l-DfScNkis-~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRL-DFSCNKIS-Y 225 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeee-ecccCcee-e
Confidence 77776 66777777777777788877777 56667777777788888877776 66666663 346667 88888877 6
Q ss_pred chhhhcCCCCCCEEEcccCcCCcccchhhhcCC---CCCEEeCcCC
Q 035878 444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML---SLVAVNLSYN 486 (496)
Q Consensus 444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N 486 (496)
||..|.+|+.|++|-|.+|.++ ..|..+...- =.++|+..-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7777888888888888888877 4455443322 2355555554
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.38 E-value=1.1e-12 Score=132.96 Aligned_cols=199 Identities=33% Similarity=0.473 Sum_probs=134.3
Q ss_pred eEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCC-CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC
Q 035878 192 VLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGG-KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE 270 (496)
Q Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 270 (496)
.+.+..+.+... ...+..++.++.|++.+|.++.+|....... +|+.|+++.|++. .+|..+..+++|+.|+++.|+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 577777776422 3334456788899999999888888877774 8888888888877 344567778888888888888
Q ss_pred CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchh
Q 035878 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQ 350 (496)
Q Consensus 271 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 350 (496)
++.. |...+..++|+.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++. ..+..
T Consensus 175 l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 175 LSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 7743 333335677777888877776 44444445555777777777533 34455666677777777777765 33556
Q ss_pred hcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878 351 IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ 398 (496)
Q Consensus 351 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 398 (496)
++.++++++|++++|.++. ++. ++...+++.|++++|.+....|..
T Consensus 251 ~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 251 IGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 6666777777777777763 333 666677777777777776555443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=3.9e-14 Score=139.84 Aligned_cols=175 Identities=31% Similarity=0.512 Sum_probs=157.9
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEE
Q 035878 306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLD 385 (496)
Q Consensus 306 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (496)
+.--...|++.|++. ++|..+..+-.|+.+.++.|.+. .+|..+.++..|++++|+.|+++ ..|..++.+ -|+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 344456789999998 78888888889999999999998 88999999999999999999998 788888876 589999
Q ss_pred ccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878 386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465 (496)
Q Consensus 386 Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 465 (496)
+++|+++ .+|..++....|..||.+.|++. .+|..++.+.+|+.+ .+..|++. .+|..+..+ .|..||+|.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l-~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL-NVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH-HHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 9999999 78888998999999999999997 889999999999999 99999999 678888855 4899999999999
Q ss_pred cccchhhhcCCCCCEEeCcCCCCcc
Q 035878 466 GEIPASLSSMLSLVAVNLSYNNLEG 490 (496)
Q Consensus 466 ~~~p~~l~~l~~L~~L~ls~N~l~g 490 (496)
.+|..|..|..|++|-|.+|+|..
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCC
Confidence 899999999999999999999974
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=4.8e-12 Score=134.66 Aligned_cols=113 Identities=42% Similarity=0.661 Sum_probs=98.4
Q ss_pred CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878 380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL 459 (496)
Q Consensus 380 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L 459 (496)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.| +|++|+++|.+|..++++++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L-dLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL-DLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE-ECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 36788999999999999999999999999999999999999989999999998 99999999999999999999999999
Q ss_pred ccCcCCcccchhhhcC-CCCCEEeCcCCCCcccCC
Q 035878 460 SHNNLSGEIPASLSSM-LSLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 460 s~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip 493 (496)
++|+++|.+|..+... .++..+++++|...+.+|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999888764 467788999887555455
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=1.2e-12 Score=122.45 Aligned_cols=198 Identities=22% Similarity=0.294 Sum_probs=87.5
Q ss_pred cCCCCCCcEEEccCCCCCCccccc----cCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCC
Q 035878 255 LKSCSSLYRVRLESNELTGDLEQD----FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330 (496)
Q Consensus 255 l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 330 (496)
+..+++|+.++|+.|-+....+.. +..+..|++|.|.+|.+...--..++. .|..|. ...-.+.-
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~ 156 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASK 156 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCC
Confidence 445556666666666665433332 334566667777666654211111100 000000 00111223
Q ss_pred CCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC----Chhh
Q 035878 331 SQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQ 398 (496)
Q Consensus 331 ~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 398 (496)
++|+++....|++... +...|...+.|+.+.++.|.+... +...+..+++|+.|||.+|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4455555555554421 222344445555555555544311 112334455555555555555422 2233
Q ss_pred hhCCCCCCEEeccCccCCccCChhcc-----CCccccccccccCCcCCcc----chhhhcCCCCCCEEEcccCcC
Q 035878 399 IGELRDLRSLSLSQNNLNGTIPFQIG-----NLVGLQDLLDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNL 464 (496)
Q Consensus 399 l~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~LL~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 464 (496)
++.+++|++|++++|.+...-...+. ..+.|+.+ .+.+|.++.. +-..+...+.|+.|+|++|++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl-~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVL-ELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCcee-ccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44455555555555555433222221 23445555 5555555421 222333455555566666655
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=4.7e-12 Score=116.06 Aligned_cols=128 Identities=31% Similarity=0.374 Sum_probs=57.4
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEc
Q 035878 307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDL 386 (496)
Q Consensus 307 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 386 (496)
+.|+++|+++|.++ .+.....-.|.++.|++++|.+.. + ..+..+++|+.|||++|.++ .+..+-.++-++++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34444455544444 222333334455555555555441 1 12444455555555555544 22333334444555555
Q ss_pred cCCcCCCCChhhhhCCCCCCEEeccCccCCcc-CChhccCCccccccccccCCcCC
Q 035878 387 SMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT-IPFQIGNLVGLQDLLDLSYNSLT 441 (496)
Q Consensus 387 s~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~LL~Ls~N~l~ 441 (496)
++|.+... ..+..+-+|..||+++|++... --..+++++-|+.+ .|.+|.+.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l-~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL-RLTGNPLA 412 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH-hhcCCCcc
Confidence 55554321 2244444555555555544321 11234555555555 55555555
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=5.2e-12 Score=118.30 Aligned_cols=66 Identities=27% Similarity=0.365 Sum_probs=38.9
Q ss_pred CCCCCCCCCEEEccCCCCccc----CCccccCCCCCceEecccCcCCcc----cCc-------cCCCCCCCCEEECCCCC
Q 035878 159 EIGNCKLLTLLALDGNFLSGP----IPSSLGNLSDLAVLAVASNQLSGE----IPA-------NIGTLSKLTDLHLFINK 223 (496)
Q Consensus 159 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~-------~l~~l~~L~~L~L~~n~ 223 (496)
.+.....+++++|++|.|.-. +...+.+.++|+..++++ .++|. +|+ .+..+++|+++|||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345567788888888877532 334455667777777765 33332 232 23345566666666665
Q ss_pred Cc
Q 035878 224 LS 225 (496)
Q Consensus 224 l~ 225 (496)
+.
T Consensus 104 ~G 105 (382)
T KOG1909|consen 104 FG 105 (382)
T ss_pred cC
Confidence 54
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.7e-11 Score=112.42 Aligned_cols=132 Identities=29% Similarity=0.383 Sum_probs=97.6
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEE
Q 035878 329 SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSL 408 (496)
Q Consensus 329 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 408 (496)
..+.|+++|+++|.|+ .+.++..-.|.++.|++++|.+.. + ..+..+++|+.|||++|.++ .+..+-..+-++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3457888888888887 667777778888888888888873 2 34777888888888888887 455555667788888
Q ss_pred eccCccCCccCChhccCCccccccccccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcc
Q 035878 409 SLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 409 ~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
.|++|.+.. -..++.+-+|..| |+++|+|... -...+++++-|+.+.|.+|++.+.
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnL-Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNL-DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheec-cccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888887752 2245666677777 8888887742 224577888888888888888754
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=7.8e-11 Score=128.27 Aligned_cols=290 Identities=23% Similarity=0.224 Sum_probs=167.2
Q ss_pred CCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC--CcccCCccccCCCCCceEecccCcCCcccCccCCCCCCC
Q 035878 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF--LSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL 214 (496)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (496)
.+....|...+-+|.+. .++... .+++|++|-+..|. +.......|..++.|++|||++|.--+.+|..++.+-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34456677777777665 223222 34478888887775 443334446678888888888876556788888888888
Q ss_pred CEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCC--CccccccCCCCCccEEEccc
Q 035878 215 TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT--GDLEQDFGIYPNLTYIDLSY 292 (496)
Q Consensus 215 ~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~ 292 (496)
++|+++++.+..+|..+.++.+|.+|++..+.....+|.....+++|++|.+...... ...-..+..+.+|+.+....
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 8888888888888888888888888888877655555666666888888887765422 11222333444454444433
Q ss_pred CcccccCCcCcCCCCCCC----EEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcC------CCCCCEEec
Q 035878 293 NRLQGEVSPKWGKCQKLT----LLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGN------LTELSTLSL 362 (496)
Q Consensus 293 n~l~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L 362 (496)
... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+.+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 222 1111122222222 2222222222 33445667778888888887775322211111 222333333
Q ss_pred cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCcc-CChhccCCcccccc
Q 035878 363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT-IPFQIGNLVGLQDL 432 (496)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L 432 (496)
.++..- ..+.+....++|+.|.+..+.....+......+..+..+.+..+.+.+. .-...+.++++..+
T Consensus 755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~ 824 (889)
T KOG4658|consen 755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL 824 (889)
T ss_pred hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec
Confidence 333222 2233344567888888887776655555566666666666666666655 33344455554444
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-11 Score=117.29 Aligned_cols=208 Identities=23% Similarity=0.162 Sum_probs=120.7
Q ss_pred CCCCCCcEEEccCCcCcccCC-cCCCCCCCCCEEEccCCCCcc--cCCccccCCCCCceEecccCcCCcccCccC-CCCC
Q 035878 137 TGLLGLKNFLLQDNMLSGRIP-EEIGNCKLLTLLALDGNFLSG--PIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLS 212 (496)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~ 212 (496)
.++.+|+.+.|.++.+..... .....|++++.|||+.|-|.. .+......+++|+.|+++.|++........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888888887763221 355678888888888887652 223334578888888888888763322221 2467
Q ss_pred CCCEEECCCCCCcc--ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcc-ccccCCCCCccEEE
Q 035878 213 KLTDLHLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDL-EQDFGIYPNLTYID 289 (496)
Q Consensus 213 ~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 289 (496)
+|+.|.++.|.++. +...+..+|+|+.|++..|...+........++.|++|+|++|++-... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 78888888888775 4444555677777777777432222333445566777777777664321 12345566666666
Q ss_pred cccCcccccC-CcC-----cCCCCCCCEEEccCCccccc-CCcccCCCCCCCEEEccCCcCc
Q 035878 290 LSYNRLQGEV-SPK-----WGKCQKLTLLGLAGNSIGGK-IPAEIGSLSQLVVLDLSSNQLS 344 (496)
Q Consensus 290 ls~n~l~~~~-~~~-----~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~ 344 (496)
++.+.+...- |+. ....++|++|++..|++... .-..+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666655321 111 13345555555555555321 0112223344444454444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.3e-10 Score=102.18 Aligned_cols=126 Identities=30% Similarity=0.395 Sum_probs=33.1
Q ss_pred CCCCCCEEEccCCcCccccchhhc-CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhh-hCCCCCC
Q 035878 329 SLSQLVVLDLSSNQLSGEIPAQIG-NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI-GELRDLR 406 (496)
Q Consensus 329 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~ 406 (496)
+..++++|+|.+|.|+. + +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 33455555555555552 2 2233 345555555555555522 234445555555555555553 22222 2345555
Q ss_pred EEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc---chhhhcCCCCCEEeC
Q 035878 407 SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI---PASLSSMLSLVAVNL 483 (496)
Q Consensus 407 ~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~l 483 (496)
+|++++|++...- .-..+..+++|++|+|.+|+++..- ...+..+++|+.||-
T Consensus 92 ~L~L~~N~I~~l~------------------------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLN------------------------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCC------------------------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChH------------------------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 5555555553210 1133455666666666666665321 123455666666653
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.7e-11 Score=116.60 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCCCCCEEEccCCCCcccCC-ccccCCCCCceEecccCcCCccc--CccCCCCCCCCEEECCCCCCcc
Q 035878 162 NCKLLTLLALDGNFLSGPIP-SSLGNLSDLAVLAVASNQLSGEI--PANIGTLSKLTDLHLFINKLSG 226 (496)
Q Consensus 162 ~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~ 226 (496)
++.+|+.+.|.++......- .....|++++.|||+.|-+.... -.....+++|+.|+++.|++..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 45556666666555431110 23445556666666665544211 1223345556666665555543
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3.9e-10 Score=99.12 Aligned_cols=110 Identities=38% Similarity=0.480 Sum_probs=43.0
Q ss_pred cCCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhh-cCCCC
Q 035878 303 WGKCQKLTLLGLAGNSIGGKIPAEIG-SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLN 380 (496)
Q Consensus 303 ~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 380 (496)
+.++.++++|+|.+|.|+.. +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 45566899999999999843 3455 578999999999999843 357789999999999999984 44444 46899
Q ss_pred CCEEEccCCcCCCC-ChhhhhCCCCCCEEeccCccCCc
Q 035878 381 LDSLDLSMNRLSGP-IPKQIGELRDLRSLSLSQNNLNG 417 (496)
Q Consensus 381 L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~ 417 (496)
|++|++++|++... .-..+..+++|+.|++.+|+++.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99999999999743 12457789999999999998873
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=4.3e-11 Score=121.88 Aligned_cols=263 Identities=26% Similarity=0.264 Sum_probs=128.5
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF 220 (496)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (496)
.++.++...+...+.--. ...+..++.+++..|.+.. +-..+..+.+|+.|++.+|.+.. +...+..+++|++|+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecc
Confidence 345555555443321111 1345566666677776652 33345666777777777777763 23225567777777777
Q ss_pred CCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccEEEcccCcccccC
Q 035878 221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGEV 299 (496)
Q Consensus 221 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~ 299 (496)
+|.|+.+. .+..++.|+.|++.+|.++.. ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+...
T Consensus 127 ~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i- 201 (414)
T KOG0531|consen 127 FNKITKLE-GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI- 201 (414)
T ss_pred cccccccc-chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-
Confidence 77776642 233444566666666666532 234445566666666666554332 1 24455555556665555422
Q ss_pred CcCcCCCCCCCEEEccCCcccccCCcccCCCC--CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcC
Q 035878 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLS--QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGA 377 (496)
Q Consensus 300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 377 (496)
..+..+..+..+++..|.++..-+ +..+. +|+.+++++|++. ..+..+..+.++..+++.+|++... ..+..
T Consensus 202 -~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~ 275 (414)
T KOG0531|consen 202 -EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLER 275 (414)
T ss_pred -cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccc
Confidence 222233333444555555542211 11112 2555566666554 2223344555555555555555422 12223
Q ss_pred CCCCCEEEccCCcCCCC---Chhh-hhCCCCCCEEeccCccCCc
Q 035878 378 LLNLDSLDLSMNRLSGP---IPKQ-IGELRDLRSLSLSQNNLNG 417 (496)
Q Consensus 378 l~~L~~L~Ls~n~l~~~---~~~~-l~~~~~L~~L~Ls~n~l~~ 417 (496)
...+..+....|.+... .... ....+.++.+.+..|.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 33444444444444311 0010 2334455555555555543
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1e-10 Score=119.16 Aligned_cols=196 Identities=27% Similarity=0.267 Sum_probs=94.9
Q ss_pred CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEE
Q 035878 210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID 289 (496)
Q Consensus 210 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 289 (496)
.+..++.+.+..|.+..+-..+..+.+|+.+++..|++... ...+..+++|++|++++|.++... .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 45566666677777666444455566666666666666532 111445556666666666655432 233444455566
Q ss_pred cccCcccccCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCc
Q 035878 290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS 368 (496)
Q Consensus 290 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (496)
+++|.++.. ..+..+..|+.+++++|++...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 666555532 233335555555555555543322 1 23445555555555554411 12222333333355555444
Q ss_pred cccchhhcCCC--CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878 369 GPIPEEIGALL--NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416 (496)
Q Consensus 369 ~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 416 (496)
..-+ +..+. .|+.+++++|++. ..+..+..+..+..+++.+|++.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 2211 11111 1455555555554 22233444455555555555443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=4.3e-10 Score=122.56 Aligned_cols=269 Identities=23% Similarity=0.242 Sum_probs=161.6
Q ss_pred CCCCCcEEEccCCc--CcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878 138 GLLGLKNFLLQDNM--LSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215 (496)
Q Consensus 138 ~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (496)
.+++|++|-+.+|. +....++.|..++.|++|||++|.=-+.+|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 44578888888886 44344455777888999999888766688888888889999999988887 7888888888899
Q ss_pred EEECCCCCCcc-ccccccCCCCCcEEecCCCccc--CCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCcc----EE
Q 035878 216 DLHLFINKLSG-LPPQVCKGGKLINFTASFNHFS--GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT----YI 288 (496)
Q Consensus 216 ~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L 288 (496)
+|++..+.-.. +|.....+.+|++|.+...... ...-..+.++.+|+.+....... .+-..+..++.|. .+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhh
Confidence 99888876544 5455555888888888665421 12223344555555555533322 1111222233333 22
Q ss_pred EcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCC------CCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878 289 DLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL------SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL 362 (496)
Q Consensus 289 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l------~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 362 (496)
.+.++... ..+..+..+.+|+.|.+.++.+......+.... +++..+...++..- ..+.+....++|+.|.+
T Consensus 700 ~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 700 SIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSL 777 (889)
T ss_pred hhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEE
Confidence 22222222 334556778888888888887764332222211 12222222222211 12233345588999999
Q ss_pred cCCcCccccchhhcCCCCCCEEEccCCcCCCC-ChhhhhCCCCCCEEecc
Q 035878 363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGP-IPKQIGELRDLRSLSLS 411 (496)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~Ls 411 (496)
..+.....+......+..+..+.+..+.+.+. .-...+.++++..+.++
T Consensus 778 ~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 778 VSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred ecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 88877666666666666777666666666654 23334444444444443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.1e-09 Score=76.76 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=33.7
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCc
Q 035878 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQ 199 (496)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 199 (496)
+|++|++++|.++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555566555554444555555666666666555555555555555555555555554
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.83 E-value=3.9e-09 Score=69.98 Aligned_cols=40 Identities=33% Similarity=0.859 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhcCC-C-CCCCCCCCCCCCCCCCCCCCCCccccceeeC
Q 035878 28 LTETEALLKWKETLV-N-QSIVQSWVIPASNSSNSTTPSPCRWSGIVCN 74 (496)
Q Consensus 28 ~~~~~~ll~~k~~~~-~-~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~ 74 (496)
.+|++||++||+++. + .+.+.+|+..+ .++||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-------~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-------DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---------S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-------CCCCeeeccEEeC
Confidence 469999999999998 4 58899998641 1699999999995
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=1.8e-09 Score=77.97 Aligned_cols=60 Identities=40% Similarity=0.572 Sum_probs=43.5
Q ss_pred cccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCC
Q 035878 428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488 (496)
Q Consensus 428 ~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 488 (496)
+|+++ ++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L-~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESL-DLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEE-EETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEE-ECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45666 7777777755456777777777777777777766667777777777777777764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=3.2e-09 Score=108.32 Aligned_cols=178 Identities=31% Similarity=0.330 Sum_probs=120.2
Q ss_pred CcCcCCCCCCCEEEccCCcccccCCcccCCC-CCCCEEEccCCcCc----------cccchhhcCCCCCCEEeccCCcCc
Q 035878 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL-SQLVVLDLSSNQLS----------GEIPAQIGNLTELSTLSLNGNDIS 368 (496)
Q Consensus 300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~----------~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (496)
|-.+..+.+|+.|.+.++.+... ..+..+ .+|+.|-- .|.+. |.+...+ ....|...+.++|.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 55667788999999999887631 111111 13333322 22221 1111111 1245778888888887
Q ss_pred cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCCh-hccCCccccccccccCCcCCccchhh
Q 035878 369 GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF-QIGNLVGLQDLLDLSYNSLTGEIPAQ 447 (496)
Q Consensus 369 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~LL~Ls~N~l~~~~p~~ 447 (496)
.+..++.-++.++.|+|++|+++.. ..+..++.|++|||++|++. .+|. ....+. |+.| .+++|.++.. ..
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L-~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL-NLRNNALTTL--RG 249 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heee-eecccHHHhh--hh
Confidence 5666777788899999999999843 36888999999999999987 4553 233344 7777 9999988732 45
Q ss_pred hcCCCCCCEEEcccCcCCcccc-hhhhcCCCCCEEeCcCCCCc
Q 035878 448 LEKLTSLQSMNLSHNNLSGEIP-ASLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 448 l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~ 489 (496)
+.++++|+.||+++|-+.+.-- .-+..+..|+.|+|.+|++.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7888999999999998876421 33566778889999999875
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.1e-09 Score=98.85 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=44.1
Q ss_pred CCCEEECCCCCCcc--ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC-CCCcc-ccccCCCCCccEE
Q 035878 213 KLTDLHLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE-LTGDL-EQDFGIYPNLTYI 288 (496)
Q Consensus 213 ~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L 288 (496)
.|+++||+...++. +-.-+..+.+|+.|.+.++++...+...++.-.+|+.++++.+. ++... .-.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666666554 33334445566666666666655555555555666666665542 22111 1123445555555
Q ss_pred EcccCccc
Q 035878 289 DLSYNRLQ 296 (496)
Q Consensus 289 ~ls~n~l~ 296 (496)
++++|.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555543
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=1.8e-08 Score=82.39 Aligned_cols=134 Identities=31% Similarity=0.394 Sum_probs=72.1
Q ss_pred CCEEEccCCcCccccchh---hcCCCCCCEEeccCCcCccccchhhc-CCCCCCEEEccCCcCCCCChhhhhCCCCCCEE
Q 035878 333 LVVLDLSSNQLSGEIPAQ---IGNLTELSTLSLNGNDISGPIPEEIG-ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSL 408 (496)
Q Consensus 333 L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 408 (496)
+..++|+.|++. .++.. +.....|+..+|++|.+. .+|..|. ..+.++.|++++|.++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445566666554 23322 333345555566666666 3344333 3346666666666666 455556666666666
Q ss_pred eccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhh
Q 035878 409 SLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASL 472 (496)
Q Consensus 409 ~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 472 (496)
+++.|.+. ..|..+..+.++-.| |..+|.+. .||..+-.-+..-..++.++.+.+.-+..+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~L-ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDML-DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHh-cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 66666665 455555556666666 66666665 444443322333334445555555544433
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=9.3e-09 Score=94.67 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=26.1
Q ss_pred CCcEEEccCCCCCCc-cccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878 260 SLYRVRLESNELTGD-LEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317 (496)
Q Consensus 260 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (496)
.|+++||++..++.. ....+..|.+|+.|.+.++++.+.+...++.-.+|+.++++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 355555555544321 1112233444555555555554444444444445555555443
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=4.7e-08 Score=80.03 Aligned_cols=133 Identities=22% Similarity=0.330 Sum_probs=102.8
Q ss_pred CCCCEEeccCCcCccccchhh---cCCCCCCEEEccCCcCCCCChhhh-hCCCCCCEEeccCccCCccCChhccCCcccc
Q 035878 355 TELSTLSLNGNDISGPIPEEI---GALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ 430 (496)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 430 (496)
..+..++|+.|++- .+++.. .....|+..+|++|.+.. +|..| ..++.++.+++++|.++ .+|..+..++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34667888888875 455544 445667788999999994 55545 45678999999999998 8899999999999
Q ss_pred ccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878 431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 431 ~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 493 (496)
.+ +++.|.+. ..|+.+..+.++-+||..+|.+. ++|..+-.-+..-..++.++.+.|.-|
T Consensus 104 ~l-Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 104 SL-NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hc-ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 99 99999999 67888888999999999999987 566554444444555667777776654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=7.1e-08 Score=98.70 Aligned_cols=156 Identities=31% Similarity=0.403 Sum_probs=111.4
Q ss_pred CcccCCCCCCCEEEccCCcCccccchhhcC-CCCCCEEeccCCcCc----------cccchhhcCCCCCCEEEccCCcCC
Q 035878 324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGN-LTELSTLSLNGNDIS----------GPIPEEIGALLNLDSLDLSMNRLS 392 (496)
Q Consensus 324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l~ 392 (496)
|-.+....+|+.|.+.++.+... ..+.. -.+|+.|.- .|.++ |.+...+. ...|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 55566778899999999887631 11111 123444422 22222 11111111 236788899999998
Q ss_pred CCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchh-hhcCCCCCCEEEcccCcCCcccchh
Q 035878 393 GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPA-QLEKLTSLQSMNLSHNNLSGEIPAS 471 (496)
Q Consensus 393 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~ 471 (496)
.+..++.-++.++.|+|++|+++.. +.+..|+.|++| ||++|.+. .+|. ....+. |+.|.+++|.++.. ..
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhL-DlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHL-DLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhccccccc-ccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence 6777888889999999999999743 378889999999 99999999 5554 344555 99999999999843 56
Q ss_pred hhcCCCCCEEeCcCCCCccc
Q 035878 472 LSSMLSLVAVNLSYNNLEGP 491 (496)
Q Consensus 472 l~~l~~L~~L~ls~N~l~g~ 491 (496)
+.++.+|..||+++|-|+|.
T Consensus 250 ie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred HHhhhhhhccchhHhhhhcc
Confidence 88999999999999988763
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.6e-07 Score=86.70 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=35.8
Q ss_pred CCCCCEEECCCCCCcc---ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcc-ccccCCCCCcc
Q 035878 211 LSKLTDLHLFINKLSG---LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDL-EQDFGIYPNLT 286 (496)
Q Consensus 211 l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 286 (496)
++.++++||.+|.++. |..-+.++|.|+.|+++.|.+...|...-....+|+.|-|.+..+.-.. ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3444445555544444 3333334444555555555444322211123345555555554443211 12233445555
Q ss_pred EEEcccC
Q 035878 287 YIDLSYN 293 (496)
Q Consensus 287 ~L~ls~n 293 (496)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555555
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=4.6e-07 Score=82.64 Aligned_cols=224 Identities=21% Similarity=0.183 Sum_probs=103.8
Q ss_pred ccCCCCCceEecccCcCCcccC----ccCCCCCCCCEEECCCCCCcc----cc-------ccccCCCCCcEEecCCCccc
Q 035878 184 LGNLSDLAVLAVASNQLSGEIP----ANIGTLSKLTDLHLFINKLSG----LP-------PQVCKGGKLINFTASFNHFS 248 (496)
Q Consensus 184 l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~----lp-------~~l~~l~~L~~L~l~~n~l~ 248 (496)
+.-+..++.++|++|.|...-. ..+.+-.+|+..+++.-.... ++ +.+.++++|+..+++.|.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3346677778888887764333 334455667776665532211 22 23445566666666666555
Q ss_pred CCCCcc----cCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC
Q 035878 249 GPIPTS----LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP 324 (496)
Q Consensus 249 ~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 324 (496)
...|+. ++.-+.|++|.+++|.+....-..++. .|.+ +.+| .-...-+.|+.+....|++.....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCcH
Confidence 444432 234455555555555543221111110 0000 0000 011223455555555555432110
Q ss_pred ----cccCCCCCCCEEEccCCcCccc-----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcC
Q 035878 325 ----AEIGSLSQLVVLDLSSNQLSGE-----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRL 391 (496)
Q Consensus 325 ----~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l 391 (496)
..+..-..|+++.+..|.|.-. +-..+..+.+|+.||+.+|-++-. ....+...+.|+.|.+.+|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 1112223566666666655422 111233456666666666665522 122333445566666666666
Q ss_pred CCCChhhh------hCCCCCCEEeccCccCCcc
Q 035878 392 SGPIPKQI------GELRDLRSLSLSQNNLNGT 418 (496)
Q Consensus 392 ~~~~~~~l------~~~~~L~~L~Ls~n~l~~~ 418 (496)
+..-...+ ...++|..|...+|...+.
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 53322211 1235666666666655443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=1.5e-07 Score=85.76 Aligned_cols=223 Identities=19% Similarity=0.211 Sum_probs=126.0
Q ss_pred CCCCCCCCEEEccCCCCcccCC----ccccCCCCCceEecccCcCCcc----cC-------ccCCCCCCCCEEECCCCCC
Q 035878 160 IGNCKLLTLLALDGNFLSGPIP----SSLGNLSDLAVLAVASNQLSGE----IP-------ANIGTLSKLTDLHLFINKL 224 (496)
Q Consensus 160 l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~----~p-------~~l~~l~~L~~L~L~~n~l 224 (496)
+..+..++.++||+|.|.-.-. ..+++-.+|+..++++- ++|. ++ +.+.+||+|+..+|+.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 4457889999999999864433 33456678998888763 3332 22 3457899999999999998
Q ss_pred cc-ccc----cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878 225 SG-LPP----QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV 299 (496)
Q Consensus 225 ~~-lp~----~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 299 (496)
.. .|+ .+.+.+.|++|.+++|.+.-.-...++ +.|.+ |..|+ -...-|.|+.+....|++..-.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~--la~nK-------Kaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFH--LAYNK-------KAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHH--HHHHh-------hhccCCCceEEEeccchhccCc
Confidence 76 443 355678999999999987521111111 00000 01110 1122244455555544443211
Q ss_pred C----cCcCCCCCCCEEEccCCcccccCC-----cccCCCCCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCc
Q 035878 300 S----PKWGKCQKLTLLGLAGNSIGGKIP-----AEIGSLSQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGND 366 (496)
Q Consensus 300 ~----~~~~~~~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~ 366 (496)
. ..+..-..|+.+.+..|.|.-... ..+..+.+|+.||+.+|.++-. +...+..++.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 0 011222455556665555442211 1223456777777777776522 23344556677777777776
Q ss_pred Cccccchhh----c--CCCCCCEEEccCCcCCCC
Q 035878 367 ISGPIPEEI----G--ALLNLDSLDLSMNRLSGP 394 (496)
Q Consensus 367 l~~~~~~~~----~--~l~~L~~L~Ls~n~l~~~ 394 (496)
++......+ . ..++|..|-..+|...+.
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 654332222 1 246677777777776643
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=7.7e-07 Score=82.25 Aligned_cols=229 Identities=18% Similarity=0.167 Sum_probs=130.6
Q ss_pred cCCCCCCcEEEccCCCCCCccc-ccc-CCCCCccEEEcccCcccc--cCCcCcCCCCCCCEEEccCCcccccCCcccCCC
Q 035878 255 LKSCSSLYRVRLESNELTGDLE-QDF-GIYPNLTYIDLSYNRLQG--EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330 (496)
Q Consensus 255 l~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 330 (496)
+.....++.+.+.++.+...-. ..| ..++.++.+|+.+|.++. ++-..+.+++.|+.|+++.|.+...+-..-...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 3334445556666665543221 112 235678888888888763 333445677888888888887765443221345
Q ss_pred CCCCEEEccCCcCcc-ccchhhcCCCCCCEEeccCCcCccc--cchhhcC-CCCCCEEEccCCcCCC--CChhhhhCCCC
Q 035878 331 SQLVVLDLSSNQLSG-EIPAQIGNLTELSTLSLNGNDISGP--IPEEIGA-LLNLDSLDLSMNRLSG--PIPKQIGELRD 404 (496)
Q Consensus 331 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~~l~~~~~ 404 (496)
.+|++|-|.+..+.- .....+..+|.+++|+++.|.+... ..+.... -+.+++|....|...- .+-..-..+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 577777777766542 2334456677777777777743211 0011111 1234444444443210 00001123567
Q ss_pred CCEEeccCccCCccC-ChhccCCccccccccccCCcCCc-cchhhhcCCCCCCEEEcccCcCCcccc----h--hhhcCC
Q 035878 405 LRSLSLSQNNLNGTI-PFQIGNLVGLQDLLDLSYNSLTG-EIPAQLEKLTSLQSMNLSHNNLSGEIP----A--SLSSML 476 (496)
Q Consensus 405 L~~L~Ls~n~l~~~~-p~~~~~l~~L~~LL~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~--~l~~l~ 476 (496)
+..+.+..|.+...- ......++.+..| +|+.|+|.. ..-+.+.++++|.-|.+++|++..... . -++.++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~L-nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCL-NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhh-hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 778888888775322 1234455666666 999998874 234667889999999999998864332 2 246777
Q ss_pred CCCEEeCc
Q 035878 477 SLVAVNLS 484 (496)
Q Consensus 477 ~L~~L~ls 484 (496)
+++.|+=+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 77777644
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=7.4e-06 Score=54.32 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=15.1
Q ss_pred CCCEEEccCCCCcccCCccccCCCCCceEecccCcCC
Q 035878 165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS 201 (496)
Q Consensus 165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 201 (496)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=8.7e-06 Score=53.98 Aligned_cols=36 Identities=33% Similarity=0.640 Sum_probs=16.5
Q ss_pred CCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878 453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 453 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 489 (496)
+|++|++++|+++ .+|..+..|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 33434455555555555555544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=7.3e-05 Score=74.07 Aligned_cols=136 Identities=24% Similarity=0.292 Sum_probs=85.3
Q ss_pred cCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCC-cCccccchhhcCCCCC
Q 035878 303 WGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN-DISGPIPEEIGALLNL 381 (496)
Q Consensus 303 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 381 (496)
+..+.+++.|++++|.++ .+|. -..+|++|.++++.--..+|..+ .++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 345688999999999887 4452 23479999998855434666554 368999999998 544 4443 57
Q ss_pred CEEEccCCcCCC--CChhhhhCCCCCCEEeccCccCC--ccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEE
Q 035878 382 DSLDLSMNRLSG--PIPKQIGELRDLRSLSLSQNNLN--GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSM 457 (496)
Q Consensus 382 ~~L~Ls~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L 457 (496)
+.|+++.+.... .+|. +|+.|.+.+++.. ..+|.. --++|++| ++++|... ..|..+. .+|++|
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L-~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTL-SLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEE-EecCCCcc-cCccccc--ccCcEE
Confidence 778887766531 2333 4566666443211 011111 11567778 88888765 4454443 578888
Q ss_pred EcccCc
Q 035878 458 NLSHNN 463 (496)
Q Consensus 458 ~Ls~N~ 463 (496)
+++.|.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 888763
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00012 Score=72.58 Aligned_cols=136 Identities=20% Similarity=0.318 Sum_probs=89.6
Q ss_pred cCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC-cCCCCChhhhhCCCCC
Q 035878 327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN-RLSGPIPKQIGELRDL 405 (496)
Q Consensus 327 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~~~~L 405 (496)
+..+.+++.|++++|.++ .+|. -.++|++|.++++.--..+|..+ .++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 445689999999999887 5562 23479999998854334667655 358999999998 554 4553 57
Q ss_pred CEEeccCccCC--ccCChhccCCccccccccccCCc-CC-ccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEE
Q 035878 406 RSLSLSQNNLN--GTIPFQIGNLVGLQDLLDLSYNS-LT-GEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAV 481 (496)
Q Consensus 406 ~~L~Ls~n~l~--~~~p~~~~~l~~L~~LL~Ls~N~-l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 481 (496)
+.|+++.+... +.+|. +|+.| .+.+++ .. ..+|..+ -++|++|++++|... ..|..+. .+|++|
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L-~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSL-SINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhhe-ecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 78888776543 23443 45556 664332 11 1122211 158999999999876 4455444 589999
Q ss_pred eCcCCC
Q 035878 482 NLSYNN 487 (496)
Q Consensus 482 ~ls~N~ 487 (496)
+++.|.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 998873
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=2.2e-05 Score=84.09 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=37.6
Q ss_pred CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccC-CCCcccCCCCCCcEEEccCCCCCCcc--c----cccCCC
Q 035878 210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSG-PIPTSLKSCSSLYRVRLESNELTGDL--E----QDFGIY 282 (496)
Q Consensus 210 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--~----~~~~~l 282 (496)
++|+|..||+++++++.+ .++.++++|+.|.+.+=.+.. ..-..+.++++|++||++........ . +.-..+
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 344444444444444443 333444444444443333321 11123444555555555544332211 0 111235
Q ss_pred CCccEEEcccCcccc
Q 035878 283 PNLTYIDLSYNRLQG 297 (496)
Q Consensus 283 ~~L~~L~ls~n~l~~ 297 (496)
|+|+.||.|+..+.+
T Consensus 250 peLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 250 PELRFLDCSGTDINE 264 (699)
T ss_pred ccccEEecCCcchhH
Confidence 666666666665554
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.58 E-value=0.00032 Score=58.71 Aligned_cols=104 Identities=12% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (496)
|.++++|+.+.+.. .+.......|.++++|+.+++..+ +.......|..+++|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 56677777777764 455555566777777777777664 5434445566666777777755 33333345566677777
Q ss_pred EEECCCCCCccccccccCCCCCcEEecC
Q 035878 216 DLHLFINKLSGLPPQVCKGGKLINFTAS 243 (496)
Q Consensus 216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~ 243 (496)
.+++..+ +..++...+.-.+++.+.+.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNCNLKEINIP 111 (129)
T ss_dssp EEEETTT--BEEHTTTTTT-T--EEE-T
T ss_pred ccccCcc-ccEEchhhhcCCCceEEEEC
Confidence 7777554 44444433333345544443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=6.8e-05 Score=80.35 Aligned_cols=148 Identities=26% Similarity=0.316 Sum_probs=95.9
Q ss_pred CCCCEEEccCCcCc-cccchhh-cCCCCCCEEeccCCcCcc-ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCE
Q 035878 331 SQLVVLDLSSNQLS-GEIPAQI-GNLTELSTLSLNGNDISG-PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRS 407 (496)
Q Consensus 331 ~~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~ 407 (496)
.+|+.|++++.... ...|..+ ..+|+|+.|.+++-.+.. .......++++|..||+|+.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 47888888886533 2223333 357888888888866642 2233445678888888888888743 56888888888
Q ss_pred EeccCccCCc-cCChhccCCccccccccccCCcCCcc--ch----hhhcCCCCCCEEEcccCcCCcccchhhh-cCCCCC
Q 035878 408 LSLSQNNLNG-TIPFQIGNLVGLQDLLDLSYNSLTGE--IP----AQLEKLTSLQSMNLSHNNLSGEIPASLS-SMLSLV 479 (496)
Q Consensus 408 L~Ls~n~l~~-~~p~~~~~l~~L~~LL~Ls~N~l~~~--~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~ 479 (496)
|.+.+=.+.. ..-..+.++++|+.| |+|..+.... +. +.-..++.|+.||.|+..+.+.+-+.+. .-++|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vL-DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVL-DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCee-eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 8887766653 222356678888888 8887765532 11 1223578888888888888766554432 233444
Q ss_pred EE
Q 035878 480 AV 481 (496)
Q Consensus 480 ~L 481 (496)
.+
T Consensus 279 ~i 280 (699)
T KOG3665|consen 279 QI 280 (699)
T ss_pred hh
Confidence 43
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.50 E-value=0.00045 Score=57.79 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=12.7
Q ss_pred CcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878 302 KWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339 (496)
Q Consensus 302 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 339 (496)
.|..+++|+.+.+..+ +.......|.++++++.+.+.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred hccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3444444444444332 332222334444444444443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00025 Score=62.47 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc
Q 035878 165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG 226 (496)
Q Consensus 165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (496)
+...+||++|.+. --..|..++.|.+|.+++|+|+...|.--.-+++|+.|.+.+|.+..
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 4445555555543 11224445555555555555554333333334555555555555543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00033 Score=61.73 Aligned_cols=82 Identities=22% Similarity=0.185 Sum_probs=38.4
Q ss_pred cEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCccc-CccCCCCCCCCEEECCC
Q 035878 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEI-PANIGTLSKLTDLHLFI 221 (496)
Q Consensus 143 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~ 221 (496)
..+||++|.+... ..|..++.|.+|.+++|+|+...|.--..+++|+.|.+.+|.+.... -+.+..||+|++|.+-+
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3444444444311 12444555555555555555444433333455555555555544110 12234455555555555
Q ss_pred CCCcc
Q 035878 222 NKLSG 226 (496)
Q Consensus 222 n~l~~ 226 (496)
|..+.
T Consensus 123 Npv~~ 127 (233)
T KOG1644|consen 123 NPVEH 127 (233)
T ss_pred Cchhc
Confidence 55543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.26 E-value=8.1e-06 Score=79.04 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=41.2
Q ss_pred CCCCCCcEEEccCCc-CcccCCcCC-CCCCCCCEEEccCC-CCcccCCccc-cCCCCCceEecccC-cCCcccC-ccCCC
Q 035878 137 TGLLGLKNFLLQDNM-LSGRIPEEI-GNCKLLTLLALDGN-FLSGPIPSSL-GNLSDLAVLAVASN-QLSGEIP-ANIGT 210 (496)
Q Consensus 137 ~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~Ls~n-~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p-~~l~~ 210 (496)
.+++++++|++.++. +++..-..+ ..|++|++|++..| .++...-..+ ..+++|++|+++.+ .+++.-- ....+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 456666666666654 222222222 34667777777663 3443333322 25666777777665 2333111 12234
Q ss_pred CCCCCEEECCC
Q 035878 211 LSKLTDLHLFI 221 (496)
Q Consensus 211 l~~L~~L~L~~ 221 (496)
+..++.+.+.+
T Consensus 241 ~~~l~~~~~kG 251 (483)
T KOG4341|consen 241 CKELEKLSLKG 251 (483)
T ss_pred chhhhhhhhcc
Confidence 44555554444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00051 Score=63.00 Aligned_cols=82 Identities=30% Similarity=0.332 Sum_probs=39.7
Q ss_pred cCCCCCCCEEEccCC--cCccccchhhcCCCCCCEEeccCCcCccccchh---hcCCCCCCEEEccCCcCCCCC---hhh
Q 035878 327 IGSLSQLVVLDLSSN--QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE---IGALLNLDSLDLSMNRLSGPI---PKQ 398 (496)
Q Consensus 327 l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~---~~~ 398 (496)
+..+++|++|.++.| ++.+.++.....+|+|+++++++|++.. +.. +..+.+|..|++.+|..+... -..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 334555566666665 4444444444445666666666665541 222 233445556666665544321 122
Q ss_pred hhCCCCCCEEec
Q 035878 399 IGELRDLRSLSL 410 (496)
Q Consensus 399 l~~~~~L~~L~L 410 (496)
|.-+++|++|+-
T Consensus 139 f~ll~~L~~LD~ 150 (260)
T KOG2739|consen 139 FLLLPSLKYLDG 150 (260)
T ss_pred HHHhhhhccccc
Confidence 334455555543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.00 E-value=3.3e-05 Score=74.96 Aligned_cols=274 Identities=19% Similarity=0.105 Sum_probs=119.0
Q ss_pred CCCceEecccCcCCcccC--ccCCCCCCCCEEECCCCCCcc---ccccccCCCCCcEEecCCC-cccCCCCc-ccCCCCC
Q 035878 188 SDLAVLAVASNQLSGEIP--ANIGTLSKLTDLHLFINKLSG---LPPQVCKGGKLINFTASFN-HFSGPIPT-SLKSCSS 260 (496)
Q Consensus 188 ~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~l~~n-~l~~~~p~-~l~~l~~ 260 (496)
..|+.|.+.++.=.+.-+ ....+++++++|++.++...+ .-..-..+++|+++++..+ .++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357777777765433222 233568888888887765322 2222234566666666653 23322111 1234566
Q ss_pred CcEEEccCCC-CCCc-cccccCCCCCccEEEcccCcccccCCcCc----CCCCCCCEEEccCCc-ccccCCccc-CCCCC
Q 035878 261 LYRVRLESNE-LTGD-LEQDFGIYPNLTYIDLSYNRLQGEVSPKW----GKCQKLTLLGLAGNS-IGGKIPAEI-GSLSQ 332 (496)
Q Consensus 261 L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~L~~L~L~~n~-l~~~~~~~l-~~l~~ 332 (496)
|++++++.+. +++. +...+.++..++.+.+.+|.=.+ .+.+ ..+..+.++++..+. ++...-..+ ..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 6666666553 2221 11122233344444444332110 0011 122333444433332 222111011 23455
Q ss_pred CCEEEccCCcCccc-c-chhhcCCCCCCEEeccCCc-Cccccchhh-cCCCCCCEEEccCCcCCC--CChhhhhCCCCCC
Q 035878 333 LVVLDLSSNQLSGE-I-PAQIGNLTELSTLSLNGND-ISGPIPEEI-GALLNLDSLDLSMNRLSG--PIPKQIGELRDLR 406 (496)
Q Consensus 333 L~~L~Ls~n~l~~~-~-~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~--~~~~~l~~~~~L~ 406 (496)
|++++.+++.-.+. . -.--.++++|+.+-++.++ |+..--..+ .+++.|+.+++.++.... .+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 66666665543211 1 1112345666666666653 221111111 234556666666554321 1112223456666
Q ss_pred EEeccCccCC-cc--C--ChhccCCccccccccccCCcCC-ccchhhhcCCCCCCEEEcccCcC
Q 035878 407 SLSLSQNNLN-GT--I--PFQIGNLVGLQDLLDLSYNSLT-GEIPAQLEKLTSLQSMNLSHNNL 464 (496)
Q Consensus 407 ~L~Ls~n~l~-~~--~--p~~~~~l~~L~~LL~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l 464 (496)
.+.++++... ++ . ...-.....+..+ .|+++... ...-+.+..+++|+.+++-+++-
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~l-EL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVL-ELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhcccccccccee-eecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 6666655332 11 0 1111233445555 55555433 22333445556666666655543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00043 Score=63.47 Aligned_cols=109 Identities=26% Similarity=0.273 Sum_probs=63.7
Q ss_pred cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC--cCCCCChhhhhCCCCCCEEeccCccCCccCChh--
Q 035878 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN--RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ-- 422 (496)
Q Consensus 347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-- 422 (496)
+......+..|+.+++.+..++.. ..+..+++|++|.++.| ++.+.++.....+++|+++++++|++.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 333344556677777777766632 24556778888888888 5555555555566888888888887752 222
Q ss_pred -ccCCccccccccccCCcCCccc---hhhhcCCCCCCEEEcc
Q 035878 423 -IGNLVGLQDLLDLSYNSLTGEI---PAQLEKLTSLQSMNLS 460 (496)
Q Consensus 423 -~~~l~~L~~LL~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls 460 (496)
+..+.+|..| |+.+|.-+..- ...|.-+++|++||-.
T Consensus 111 pl~~l~nL~~L-dl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 111 PLKELENLKSL-DLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcchhhh-hcccCCccccccHHHHHHHHhhhhcccccc
Confidence 2334445555 66666554321 1234445555555433
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.67 E-value=0.00011 Score=76.57 Aligned_cols=184 Identities=23% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCCCCEEECCCCC-Ccc--ccccccCCCCCcEEecCCCc-ccCC-CCcccCCCCCCcEEEccCCCCCCc--cccccCCCC
Q 035878 211 LSKLTDLHLFINK-LSG--LPPQVCKGGKLINFTASFNH-FSGP-IPTSLKSCSSLYRVRLESNELTGD--LEQDFGIYP 283 (496)
Q Consensus 211 l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L~l~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~ 283 (496)
+++|+.|+++.+. ++. +......+++|+.|.+..+. ++.. +-.....++.|++|+++.+..... +......++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 4555555555554 333 21111224555555544443 3321 112223455666666665544211 112223345
Q ss_pred CccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc---ccCCcccCCCCCCCEEEccCCcCcccc-chhhcCCCCCCE
Q 035878 284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG---GKIPAEIGSLSQLVVLDLSSNQLSGEI-PAQIGNLTELST 359 (496)
Q Consensus 284 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~ 359 (496)
+++.|.+.... .+..++.+.+.+..-. .........+++++.+.+..+...... ...+.+++.|+
T Consensus 322 ~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~- 390 (482)
T KOG1947|consen 322 NLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT- 390 (482)
T ss_pred chhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-
Confidence 55554432211 1333444443332211 112223455666777766666633221 23444555552
Q ss_pred EeccCCcCccccchhhcCCCCCCEEEccCCcCCCC-ChhhhhC-CCCCCEEeccCcc
Q 035878 360 LSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP-IPKQIGE-LRDLRSLSLSQNN 414 (496)
Q Consensus 360 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~-~~~L~~L~Ls~n~ 414 (496)
..+... ......++.|+++.+..... .-..... +..++.+++.++.
T Consensus 391 ~~l~~~---------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 391 ESLELR---------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred hHHHHH---------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 211111 11111266666666654311 1111111 4556666666654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00058 Score=63.07 Aligned_cols=99 Identities=24% Similarity=0.248 Sum_probs=60.6
Q ss_pred CCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccc-hhhhcCCCCCCEE
Q 035878 379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI-PAQLEKLTSLQSM 457 (496)
Q Consensus 379 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~-p~~l~~l~~L~~L 457 (496)
.+.+.|+.-+|.+.+. .....++.|+.|.||-|+++..-| +..|+.|++| .|..|.|.... -..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkEl-YLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKEL-YLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHH-HHHhcccccHHHHHHHhcCchhhhH
Confidence 3455566666666532 234456667777777776653332 4566777777 77777666421 1345677888888
Q ss_pred EcccCcCCcccch-----hhhcCCCCCEEe
Q 035878 458 NLSHNNLSGEIPA-----SLSSMLSLVAVN 482 (496)
Q Consensus 458 ~Ls~N~l~~~~p~-----~l~~l~~L~~L~ 482 (496)
.|..|+-.|.-+. .+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877766543 244566676664
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.28 E-value=0.0013 Score=68.46 Aligned_cols=111 Identities=28% Similarity=0.268 Sum_probs=56.9
Q ss_pred CCCCCcEEEccCCCCCCc--cccccCCCCCccEEEcccC-cccccC----CcCcCCCCCCCEEEccCCc-ccccCCcccC
Q 035878 257 SCSSLYRVRLESNELTGD--LEQDFGIYPNLTYIDLSYN-RLQGEV----SPKWGKCQKLTLLGLAGNS-IGGKIPAEIG 328 (496)
Q Consensus 257 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n-~l~~~~----~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~ 328 (496)
.++.|+.+.+..+.-... .......++.|+.|+++++ ...... ......+++|+.++++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777776643222 2234455677777777763 111111 1123445666667766665 4433322332
Q ss_pred C-CCCCCEEEccCCc-Cccc-cchhhcCCCCCCEEeccCCcC
Q 035878 329 S-LSQLVVLDLSSNQ-LSGE-IPAQIGNLTELSTLSLNGNDI 367 (496)
Q Consensus 329 ~-l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l 367 (496)
. +++|++|.+..+. +++. +-.....+++|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 5666666655555 3422 222234556666666665544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00022 Score=65.74 Aligned_cols=64 Identities=30% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc-chhhcCCCCCCEEeccCCcCccc
Q 035878 305 KCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI-PAQIGNLTELSTLSLNGNDISGP 370 (496)
Q Consensus 305 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~ 370 (496)
.++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|...- -..+.++|+|+.|.|..|.-.|.
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 344444444444444422 12334444444444444444210 11234455555555555544433
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.08 E-value=0.00012 Score=75.03 Aligned_cols=83 Identities=27% Similarity=0.322 Sum_probs=42.7
Q ss_pred ccEEEcccCcccccCC----cCcCCCCCCCEEEccCCcccccCCc----ccCCC-CCCCEEEccCCcCccc----cchhh
Q 035878 285 LTYIDLSYNRLQGEVS----PKWGKCQKLTLLGLAGNSIGGKIPA----EIGSL-SQLVVLDLSSNQLSGE----IPAQI 351 (496)
Q Consensus 285 L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~Ls~n~l~~~----~~~~l 351 (496)
+..+.+.+|.+..... ..+.....|+.|++++|.+.+..-. .+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6666777776654322 2234456666666666666532111 11121 3455566666655532 33344
Q ss_pred cCCCCCCEEeccCCcC
Q 035878 352 GNLTELSTLSLNGNDI 367 (496)
Q Consensus 352 ~~l~~L~~L~Ls~n~l 367 (496)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455566666666655
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0031 Score=34.77 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=13.7
Q ss_pred CCCEEEcccCcCCcccchhhhc
Q 035878 453 SLQSMNLSHNNLSGEIPASLSS 474 (496)
Q Consensus 453 ~L~~L~Ls~N~l~~~~p~~l~~ 474 (496)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 66665554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0079 Score=33.13 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=5.1
Q ss_pred CcEEEccCCcCc
Q 035878 142 LKNFLLQDNMLS 153 (496)
Q Consensus 142 L~~L~L~~n~l~ 153 (496)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.15 E-value=0.00024 Score=72.97 Aligned_cols=183 Identities=28% Similarity=0.284 Sum_probs=110.6
Q ss_pred CCCcEEEccCCCCCCcccc----ccCCCCCccEEEcccCcccccCCc----CcCCC-CCCCEEEccCCccccc----CCc
Q 035878 259 SSLYRVRLESNELTGDLEQ----DFGIYPNLTYIDLSYNRLQGEVSP----KWGKC-QKLTLLGLAGNSIGGK----IPA 325 (496)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~L~~n~l~~~----~~~ 325 (496)
..+.++.|.+|.+...... .+...+.|+.|++++|.+.+..-. .+... ..+++|++..|.+++. +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3477888888888754332 345678889999999988743211 22222 4677788888887754 344
Q ss_pred ccCCCCCCCEEEccCCcCcc----ccchhhc----CCCCCCEEeccCCcCcccc----chhhcCCCC-CCEEEccCCcCC
Q 035878 326 EIGSLSQLVVLDLSSNQLSG----EIPAQIG----NLTELSTLSLNGNDISGPI----PEEIGALLN-LDSLDLSMNRLS 392 (496)
Q Consensus 326 ~l~~l~~L~~L~Ls~n~l~~----~~~~~l~----~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~Ls~n~l~ 392 (496)
.+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 55667888999999988741 1222333 4667778888877776321 112233334 555777777766
Q ss_pred CCC----hhhhhCC-CCCCEEeccCccCCccCC----hhccCCccccccccccCCcCCc
Q 035878 393 GPI----PKQIGEL-RDLRSLSLSQNNLNGTIP----FQIGNLVGLQDLLDLSYNSLTG 442 (496)
Q Consensus 393 ~~~----~~~l~~~-~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~LL~Ls~N~l~~ 442 (496)
+.. ...+..+ ..+++++++.|.++..-. ..+..+..++++ .+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l-~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEEL-SLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHh-hcccCcccc
Confidence 431 2233334 556677777777664433 233445566666 677776664
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.09 E-value=0.057 Score=27.56 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=5.0
Q ss_pred CCCEEECCCCCCcc
Q 035878 213 KLTDLHLFINKLSG 226 (496)
Q Consensus 213 ~L~~L~L~~n~l~~ 226 (496)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.31 E-value=0.006 Score=55.12 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=66.5
Q ss_pred hhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCC
Q 035878 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTS 453 (496)
Q Consensus 374 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~ 453 (496)
.+......+.||++.|++. ..-..|+.++.+..++++.|++. ..|..+++...+..+ ++-.|..+ ..|.+++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~-~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNA-ASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHH-Hhhccchh-hCCccccccCC
Confidence 3455567788888888876 23344666677788888888876 778888888888877 88777777 67888888888
Q ss_pred CCEEEcccCcCC
Q 035878 454 LQSMNLSHNNLS 465 (496)
Q Consensus 454 L~~L~Ls~N~l~ 465 (496)
++++++.+|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888865
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.63 E-value=0.15 Score=29.13 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=13.8
Q ss_pred CCCCCEEECCCCCCcccccccc
Q 035878 211 LSKLTDLHLFINKLSGLPPQVC 232 (496)
Q Consensus 211 l~~L~~L~L~~n~l~~lp~~l~ 232 (496)
+++|++|++++|+++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777766665543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.63 E-value=0.15 Score=29.13 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=13.8
Q ss_pred CCCCCEEECCCCCCcccccccc
Q 035878 211 LSKLTDLHLFINKLSGLPPQVC 232 (496)
Q Consensus 211 l~~L~~L~L~~n~l~~lp~~l~ 232 (496)
+++|++|++++|+++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777766665543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.10 E-value=0.0092 Score=53.94 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=66.0
Q ss_pred hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccc
Q 035878 350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGL 429 (496)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 429 (496)
.+......+.||++.|++. .....|+.++.+..||++.|++. ..|..+.....++.+++..|+.+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3556677788888888776 34455666777888888888877 66777777777788888888776 677788888888
Q ss_pred cccccccCCcCC
Q 035878 430 QDLLDLSYNSLT 441 (496)
Q Consensus 430 ~~LL~Ls~N~l~ 441 (496)
+++ ++-.|.+.
T Consensus 114 k~~-e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKN-EQKKTEFF 124 (326)
T ss_pred chh-hhccCcch
Confidence 888 88877765
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.18 E-value=0.13 Score=28.83 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=10.2
Q ss_pred CCCCEEEcccCcCCcccchh
Q 035878 452 TSLQSMNLSHNNLSGEIPAS 471 (496)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~p~~ 471 (496)
++|++|+|++|++++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666665544443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.21 E-value=0.46 Score=27.09 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=12.0
Q ss_pred CCCCCEEEcccCcCCcc
Q 035878 451 LTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 451 l~~L~~L~Ls~N~l~~~ 467 (496)
+++|++|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677888888887743
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.21 E-value=0.46 Score=27.09 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=12.0
Q ss_pred CCCCCEEEcccCcCCcc
Q 035878 451 LTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 451 l~~L~~L~Ls~N~l~~~ 467 (496)
+++|++|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677888888887743
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.07 E-value=0.22 Score=44.34 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=12.5
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341 (496)
Q Consensus 310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 341 (496)
+.+|-++..|..+.-..+.+++.++.|.+.++
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 33444444333333333333444444444433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.80 E-value=0.15 Score=45.29 Aligned_cols=81 Identities=21% Similarity=0.149 Sum_probs=46.3
Q ss_pred CccEEEcccCcccccCCcCcCCCCCCCEEEccCCccccc-CCcccC-CCCCCCEEEccCCc-CccccchhhcCCCCCCEE
Q 035878 284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK-IPAEIG-SLSQLVVLDLSSNQ-LSGEIPAQIGNLTELSTL 360 (496)
Q Consensus 284 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L 360 (496)
.++.+|-++..+..+.-+.+..++.++.|.+.+|.--+. --+.++ -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777777666556666777777777766643211 001111 23567777777654 554444455666666666
Q ss_pred eccC
Q 035878 361 SLNG 364 (496)
Q Consensus 361 ~Ls~ 364 (496)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.31 E-value=2.4 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=12.5
Q ss_pred CCCCEEECCCCCCccccc
Q 035878 212 SKLTDLHLFINKLSGLPP 229 (496)
Q Consensus 212 ~~L~~L~L~~n~l~~lp~ 229 (496)
++|++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777664
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.45 E-value=3.8 Score=23.50 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=11.2
Q ss_pred CCCCCEEEcccCcCC
Q 035878 451 LTSLQSMNLSHNNLS 465 (496)
Q Consensus 451 l~~L~~L~Ls~N~l~ 465 (496)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356788888888876
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.28 E-value=5.2 Score=23.26 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=11.2
Q ss_pred CCCCEEEcccCcCCc
Q 035878 452 TSLQSMNLSHNNLSG 466 (496)
Q Consensus 452 ~~L~~L~Ls~N~l~~ 466 (496)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888888763
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.79 E-value=30 Score=35.25 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCCEEEccCCcccccCCcc--cCCCCCCCEEEccCCcCc-----cccchhh----cCCCCCCEEeccCCcCccccch---
Q 035878 308 KLTLLGLAGNSIGGKIPAE--IGSLSQLVVLDLSSNQLS-----GEIPAQI----GNLTELSTLSLNGNDISGPIPE--- 373 (496)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~-----~~~~~~l----~~l~~L~~L~Ls~n~l~~~~~~--- 373 (496)
.+++|++..|...|..-.. +...+..+.+++..-.-. +...... ....-+..+.++.+.+......
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4677777777766554332 222345555555432210 0000000 1122366777777776532222
Q ss_pred hhcCCCCCCEEEccCCcCCC----CChhhhhCCCCCCEEeccCccCC
Q 035878 374 EIGALLNLDSLDLSMNRLSG----PIPKQIGELRDLRSLSLSQNNLN 416 (496)
Q Consensus 374 ~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~ 416 (496)
....-+.+..|++++|.... .+|.....-..++.+..+.|..+
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 23345678888888887653 24455555556777777766543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.94 E-value=52 Score=33.62 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=14.5
Q ss_pred CCCEEEEEcCCCCCccccCC
Q 035878 76 AGSVTEINLANTGLAGTLHD 95 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~ 95 (496)
..++.++|++.+.+....+.
T Consensus 164 npr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred cchhhhhccCCCcccccCCc
Confidence 45678899998877765543
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.06 E-value=12 Score=38.81 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=6.6
Q ss_pred CCCEEEccCCcCC
Q 035878 380 NLDSLDLSMNRLS 392 (496)
Q Consensus 380 ~L~~L~Ls~n~l~ 392 (496)
.|++|-+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3455555555554
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.37 E-value=21 Score=20.06 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=9.0
Q ss_pred CCCCCEEEcccCc
Q 035878 451 LTSLQSMNLSHNN 463 (496)
Q Consensus 451 l~~L~~L~Ls~N~ 463 (496)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777775
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.21 E-value=21 Score=37.00 Aligned_cols=64 Identities=30% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCCCCCEEeccCccCCccC--ChhccCCccccccccccCC--cCCccchhhhcC--CCCCCEEEcccCcCCcc
Q 035878 401 ELRDLRSLSLSQNNLNGTI--PFQIGNLVGLQDLLDLSYN--SLTGEIPAQLEK--LTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 401 ~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~LL~Ls~N--~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ 467 (496)
+.+.+..++|++|++.... ..--...+.+..| +|++| .+.. ..++.+ ...|++|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L-~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTL-DLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhhee-ecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 5677888999999875321 1112235678888 99999 4432 222322 34588999999998654
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.07 E-value=40 Score=42.09 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=24.0
Q ss_pred eccCccCCccCChhccCCccccccccccCCcCCc
Q 035878 409 SLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442 (496)
Q Consensus 409 ~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~ 442 (496)
||++|+|+...+..|..+.+|+.| +|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~L-dLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEI-DLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEE-EeeCCcccc
Confidence 577888875555667777788887 888887763
Done!