Query 035878
Match_columns 496
No_of_seqs 646 out of 4674
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.8E-68 2.7E-72 579.4 34.0 461 24-495 7-723 (768)
2 4eco_A Uncharacterized protein 100.0 1.7E-59 5.9E-64 502.4 29.9 426 29-489 30-600 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.6E-57 8.8E-62 494.7 32.1 439 28-490 268-841 (876)
4 3rgz_A Protein brassinosteroid 100.0 4.5E-54 1.5E-58 470.5 26.0 406 76-491 246-743 (768)
5 3t6q_A CD180 antigen; protein- 100.0 4.5E-50 1.5E-54 428.2 38.3 255 236-493 279-540 (606)
6 3t6q_A CD180 antigen; protein- 100.0 3E-49 1E-53 421.9 36.0 415 76-493 32-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-49 2.6E-53 418.7 31.4 398 76-493 31-562 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-48 1.4E-52 427.6 33.0 411 66-494 14-544 (844)
9 4eco_A Uncharacterized protein 100.0 5.5E-49 1.9E-53 421.1 24.9 366 111-495 85-584 (636)
10 2z63_A TOLL-like receptor 4, v 100.0 2E-47 6.8E-52 404.6 29.9 398 76-494 27-536 (570)
11 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-47 3.1E-51 408.1 34.7 400 76-491 24-519 (680)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-48 2.2E-52 406.7 24.6 400 65-493 3-514 (549)
13 1ziw_A TOLL-like receptor 3; i 100.0 5.2E-46 1.8E-50 402.1 36.3 173 319-492 393-600 (680)
14 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-46 9E-51 399.1 30.8 374 76-469 55-562 (606)
15 4ecn_A Leucine-rich repeat pro 100.0 1E-46 3.5E-51 411.3 27.1 367 109-495 325-824 (876)
16 3v47_A TOLL-like receptor 5B a 100.0 1.1E-45 3.8E-50 380.5 28.7 359 111-493 34-412 (455)
17 2z63_A TOLL-like receptor 4, v 100.0 4.2E-45 1.4E-49 386.8 28.7 390 82-494 12-512 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-45 7.3E-50 384.9 26.0 389 76-493 20-485 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 4E-45 1.4E-49 403.7 28.5 407 76-493 47-564 (844)
20 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-44 1.9E-48 376.7 28.0 391 71-494 2-491 (549)
21 3v47_A TOLL-like receptor 5B a 100.0 2.2E-43 7.6E-48 363.3 28.3 380 61-469 3-412 (455)
22 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-44 1.3E-48 350.6 19.4 289 28-366 5-302 (313)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-43 8.1E-48 372.8 26.9 383 80-493 34-514 (562)
24 2z7x_B TOLL-like receptor 1, v 100.0 8.3E-43 2.8E-47 365.3 28.1 384 80-494 3-461 (520)
25 4g8a_A TOLL-like receptor 4; l 100.0 6E-42 2.1E-46 366.7 32.1 396 77-491 52-582 (635)
26 1o6v_A Internalin A; bacterial 100.0 2.2E-40 7.6E-45 342.0 31.9 344 77-466 46-389 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-40 3.6E-45 352.5 29.3 358 111-494 35-490 (562)
28 1jl5_A Outer protein YOPM; leu 100.0 6.5E-41 2.2E-45 343.8 25.8 364 77-494 11-416 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-40 7.6E-45 340.1 26.1 343 77-494 42-392 (457)
30 1o6v_A Internalin A; bacterial 100.0 7.3E-39 2.5E-43 330.6 32.9 345 101-490 45-389 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 5.3E-39 1.8E-43 332.7 29.0 322 142-467 13-335 (477)
32 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-38 5.9E-43 339.9 33.7 372 77-466 76-581 (635)
33 2id5_A Lingo-1, leucine rich r 100.0 1E-38 3.6E-43 330.5 30.2 320 80-417 14-334 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.3E-38 2.2E-42 321.9 29.5 317 76-448 63-394 (457)
35 1jl5_A Outer protein YOPM; leu 100.0 2.5E-38 8.6E-43 324.6 25.1 338 100-494 9-377 (454)
36 3o6n_A APL1; leucine-rich repe 100.0 1.3E-37 4.6E-42 313.8 26.7 308 141-467 46-354 (390)
37 3oja_B Anopheles plasmodium-re 100.0 1.7E-37 5.8E-42 330.1 26.2 303 111-441 55-358 (597)
38 4fmz_A Internalin; leucine ric 100.0 3E-36 1E-40 298.9 31.5 307 136-489 40-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 3.4E-36 1.2E-40 298.6 30.3 308 97-465 39-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 7.3E-37 2.5E-41 308.4 24.6 311 100-443 43-354 (390)
41 3oja_B Anopheles plasmodium-re 100.0 7.4E-36 2.5E-40 317.4 26.2 312 138-468 49-361 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-37 2.5E-41 298.9 14.6 253 235-491 50-307 (313)
43 4fcg_A Uncharacterized protein 100.0 3.4E-36 1.1E-40 296.1 15.1 279 27-344 25-314 (328)
44 1xku_A Decorin; proteoglycan, 100.0 5.3E-34 1.8E-38 280.8 29.6 295 141-463 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-34 1.1E-38 282.8 26.0 288 141-463 34-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-38 7.1E-43 326.7 -4.3 354 136-490 24-441 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 5.9E-38 2E-42 323.3 -2.7 351 140-491 3-413 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-33 5.8E-38 277.5 27.1 288 165-487 34-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 5.9E-33 2E-37 273.4 29.6 288 165-487 32-330 (330)
50 2z80_A TOLL-like receptor 2, v 100.0 4E-32 1.4E-36 270.0 19.1 253 141-394 53-316 (353)
51 3ogk_B Coronatine-insensitive 100.0 7.1E-35 2.4E-39 309.8 -1.2 376 100-491 110-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 3E-32 1E-36 270.9 17.4 276 187-467 30-316 (353)
53 2z66_A Variable lymphocyte rec 100.0 3.3E-31 1.1E-35 258.0 20.8 247 144-393 11-262 (306)
54 2z66_A Variable lymphocyte rec 100.0 9E-31 3.1E-35 254.9 20.5 246 167-416 10-261 (306)
55 4fcg_A Uncharacterized protein 100.0 2.6E-30 9E-35 254.0 19.2 225 259-489 81-314 (328)
56 1ozn_A Reticulon 4 receptor; N 100.0 3.7E-30 1.3E-34 247.9 17.9 253 191-448 14-268 (285)
57 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-29 7.3E-34 242.6 22.2 254 167-424 14-269 (285)
58 3zyi_A Leucine-rich repeat-con 100.0 6.1E-29 2.1E-33 255.4 24.0 248 213-465 55-303 (452)
59 3ogk_B Coronatine-insensitive 100.0 1.2E-32 4.1E-37 292.6 -4.6 391 76-484 111-548 (592)
60 3zyj_A Leucine-rich repeat-con 100.0 6.4E-29 2.2E-33 254.3 23.1 248 213-465 44-292 (440)
61 3zyi_A Leucine-rich repeat-con 100.0 7.7E-29 2.6E-33 254.6 23.8 248 189-442 55-304 (452)
62 3zyj_A Leucine-rich repeat-con 100.0 9.3E-29 3.2E-33 253.1 24.1 248 189-442 44-293 (440)
63 3o53_A Protein LRIM1, AGAP0063 100.0 7.6E-31 2.6E-35 256.8 7.2 257 142-436 12-270 (317)
64 3g06_A SSPH2 (leucine-rich rep 100.0 3.2E-28 1.1E-32 257.4 27.4 268 140-475 40-307 (622)
65 1wwl_A Monocyte differentiatio 100.0 2.8E-31 9.5E-36 259.3 3.5 254 208-490 39-310 (312)
66 1wwl_A Monocyte differentiatio 100.0 5.3E-31 1.8E-35 257.3 5.0 251 183-466 38-310 (312)
67 3g06_A SSPH2 (leucine-rich rep 100.0 1.1E-27 3.7E-32 253.3 27.7 263 164-494 40-302 (622)
68 3o53_A Protein LRIM1, AGAP0063 100.0 3.7E-30 1.3E-34 251.9 7.6 267 166-470 12-281 (317)
69 2p1m_B Transport inhibitor res 100.0 2.9E-31 9.8E-36 282.1 -5.4 209 278-489 284-519 (594)
70 3oja_A Leucine-rich immune mol 100.0 8.2E-29 2.8E-33 256.3 11.1 234 236-484 35-270 (487)
71 3oja_A Leucine-rich immune mol 100.0 1.3E-28 4.4E-33 254.8 11.7 235 164-411 34-270 (487)
72 2o6q_A Variable lymphocyte rec 100.0 7.1E-27 2.4E-31 223.2 22.8 217 63-320 2-218 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 1.2E-26 4E-31 222.3 20.1 224 240-468 12-240 (276)
74 2p1m_B Transport inhibitor res 99.9 1.7E-30 5.9E-35 276.1 -8.5 347 138-488 154-543 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 7.8E-26 2.7E-30 216.6 20.9 222 217-442 12-238 (276)
76 2o6q_A Variable lymphocyte rec 99.9 4.2E-25 1.4E-29 210.8 22.5 204 260-467 17-220 (270)
77 3rfs_A Internalin B, repeat mo 99.9 9.6E-26 3.3E-30 215.5 15.3 226 238-477 22-247 (272)
78 3rfs_A Internalin B, repeat mo 99.9 4.8E-25 1.6E-29 210.7 18.6 208 210-427 39-246 (272)
79 2ca6_A RAN GTPase-activating p 99.9 4.8E-27 1.6E-31 236.2 4.1 244 227-491 24-318 (386)
80 1p9a_G Platelet glycoprotein I 99.9 1.4E-24 4.8E-29 209.3 20.2 204 255-466 6-209 (290)
81 1p9a_G Platelet glycoprotein I 99.9 3.8E-24 1.3E-28 206.2 22.4 202 136-343 6-207 (290)
82 3goz_A Leucine-rich repeat-con 99.9 1.5E-26 5.1E-31 230.5 5.5 255 216-471 2-303 (362)
83 2ast_B S-phase kinase-associat 99.9 3.6E-26 1.2E-30 225.2 7.7 231 259-494 70-311 (336)
84 2ca6_A RAN GTPase-activating p 99.9 4.1E-27 1.4E-31 236.7 -0.2 255 203-469 23-320 (386)
85 3goz_A Leucine-rich repeat-con 99.9 2E-26 7E-31 229.6 4.2 253 168-420 2-301 (362)
86 4glp_A Monocyte differentiatio 99.9 3E-25 1E-29 216.3 12.1 224 260-490 65-308 (310)
87 2ast_B S-phase kinase-associat 99.9 8.2E-26 2.8E-30 222.7 6.5 252 166-449 49-314 (336)
88 3m19_A Variable lymphocyte rec 99.9 2.7E-23 9.3E-28 196.0 19.1 205 283-492 14-224 (251)
89 3m19_A Variable lymphocyte rec 99.9 2.3E-23 8E-28 196.5 18.3 204 259-467 14-223 (251)
90 4glp_A Monocyte differentiatio 99.9 5.2E-24 1.8E-28 207.5 13.1 199 261-466 93-308 (310)
91 2xwt_C Thyrotropin receptor; s 99.9 1.4E-23 4.9E-28 196.4 15.0 198 283-487 31-237 (239)
92 2xwt_C Thyrotropin receptor; s 99.9 3E-23 1E-27 194.2 15.7 178 141-320 32-218 (239)
93 1h6u_A Internalin H; cell adhe 99.9 7.6E-23 2.6E-27 199.0 17.7 207 241-466 25-231 (308)
94 1h6u_A Internalin H; cell adhe 99.9 2.3E-22 7.8E-27 195.6 18.6 193 185-416 38-230 (308)
95 3cvr_A Invasion plasmid antige 99.9 9.2E-22 3.1E-26 205.6 17.2 187 260-475 60-253 (571)
96 2o6s_A Variable lymphocyte rec 99.9 2.3E-21 7.8E-26 177.4 17.5 175 283-469 28-202 (208)
97 4ay9_X Follicle-stimulating ho 99.9 2.2E-21 7.4E-26 192.2 17.8 239 191-438 12-256 (350)
98 2o6s_A Variable lymphocyte rec 99.9 3.4E-21 1.2E-25 176.2 16.7 175 260-446 29-203 (208)
99 3cvr_A Invasion plasmid antige 99.9 1.8E-21 6.2E-26 203.3 16.8 183 283-494 59-248 (571)
100 4ay9_X Follicle-stimulating ho 99.9 2E-21 6.9E-26 192.5 16.3 241 215-463 12-257 (350)
101 3e6j_A Variable lymphocyte rec 99.8 9.8E-20 3.3E-24 169.1 18.4 135 140-274 40-174 (229)
102 4b8c_D Glucose-repressible alc 99.8 3.5E-22 1.2E-26 215.9 2.1 262 29-320 132-404 (727)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-20 9.5E-25 171.7 13.7 156 310-469 14-170 (220)
104 1h6t_A Internalin B; cell adhe 99.8 1E-19 3.5E-24 175.3 15.5 187 264-467 29-215 (291)
105 2v9t_B SLIT homolog 2 protein 99.8 8.3E-20 2.8E-24 168.5 14.1 153 310-466 14-166 (220)
106 2xot_A Amphoterin-induced prot 99.8 8.6E-20 2.9E-24 181.5 15.0 176 286-465 21-202 (361)
107 3e6j_A Variable lymphocyte rec 99.8 1.7E-19 5.9E-24 167.4 15.4 157 308-469 20-176 (229)
108 1h6t_A Internalin B; cell adhe 99.8 8.9E-20 3E-24 175.7 13.9 187 240-443 29-215 (291)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-19 9.3E-24 165.0 15.5 157 285-445 13-170 (220)
110 1m9s_A Internalin B; cell inva 99.8 6.3E-20 2.1E-24 193.7 11.7 192 164-370 21-212 (605)
111 1m9s_A Internalin B; cell inva 99.8 1.4E-19 4.8E-24 191.0 14.2 188 111-322 25-212 (605)
112 2xot_A Amphoterin-induced prot 99.8 5E-19 1.7E-23 176.0 15.4 127 191-320 21-149 (361)
113 2v9t_B SLIT homolog 2 protein 99.8 1E-18 3.5E-23 161.2 16.3 114 279-392 52-165 (220)
114 4ezg_A Putative uncharacterize 99.8 2.8E-19 9.4E-24 162.0 11.6 152 330-490 43-195 (197)
115 4b8c_D Glucose-repressible alc 99.8 7.8E-20 2.7E-24 197.6 6.5 190 292-492 210-407 (727)
116 4ezg_A Putative uncharacterize 99.8 1.4E-18 4.6E-23 157.4 12.3 152 306-465 43-194 (197)
117 1dce_A Protein (RAB geranylger 99.8 1.1E-21 3.8E-26 205.8 -9.7 122 356-483 442-567 (567)
118 1xeu_A Internalin C; cellular 99.8 7.8E-19 2.7E-23 166.5 8.9 170 282-467 18-187 (263)
119 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.8E-23 165.5 9.5 168 139-320 18-185 (263)
120 3sb4_A Hypothetical leucine ri 99.8 3.7E-19 1.3E-23 174.5 5.4 219 258-483 100-328 (329)
121 1dce_A Protein (RAB geranylger 99.7 1.9E-20 6.5E-25 196.4 -6.1 195 281-494 347-551 (567)
122 1w8a_A SLIT protein; signaling 99.7 5.8E-18 2E-22 152.6 11.0 132 334-469 11-143 (192)
123 3sb4_A Hypothetical leucine ri 99.7 3.1E-18 1.1E-22 167.9 6.2 222 234-459 100-328 (329)
124 2ell_A Acidic leucine-rich nuc 99.7 2.6E-17 8.9E-22 144.9 11.2 132 355-489 24-160 (168)
125 1w8a_A SLIT protein; signaling 99.7 5.5E-17 1.9E-21 146.1 12.2 173 310-491 11-185 (192)
126 2je0_A Acidic leucine-rich nuc 99.7 3.2E-17 1.1E-21 141.3 9.7 128 355-485 17-149 (149)
127 4fdw_A Leucine rich hypothetic 99.7 1.7E-15 5.7E-20 152.1 23.6 265 138-414 111-381 (401)
128 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4.1E-21 140.6 12.8 132 283-416 24-160 (168)
129 2o6r_A Variable lymphocyte rec 99.7 1.9E-16 6.4E-21 140.7 12.4 134 332-469 8-141 (177)
130 2je0_A Acidic leucine-rich nuc 99.7 7.5E-17 2.6E-21 138.9 9.4 126 332-460 18-148 (149)
131 2wfh_A SLIT homolog 2 protein 99.7 3.1E-16 1.1E-20 141.3 12.9 128 334-466 13-140 (193)
132 4fdw_A Leucine rich hypothetic 99.7 8.1E-15 2.8E-19 147.1 21.6 262 188-462 113-380 (401)
133 2o6r_A Variable lymphocyte rec 99.6 1.5E-15 5.3E-20 134.7 13.6 133 309-445 9-141 (177)
134 4fs7_A Uncharacterized protein 99.6 2.3E-14 8E-19 143.9 23.6 326 136-481 67-393 (394)
135 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.3E-20 136.7 12.7 128 310-442 13-140 (193)
136 4fs7_A Uncharacterized protein 99.6 2.3E-14 7.9E-19 143.9 21.6 318 152-486 59-376 (394)
137 1ds9_A Outer arm dynein; leuci 99.6 6.1E-18 2.1E-22 153.2 -4.6 150 332-489 19-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-15 4.1E-20 135.3 8.7 132 327-464 15-152 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.6 3.6E-15 1.2E-19 132.2 8.4 132 304-441 16-153 (176)
140 1ds9_A Outer arm dynein; leuci 99.6 2.6E-17 8.8E-22 149.1 -6.5 133 326-466 43-186 (198)
141 3g39_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 125.0 9.8 109 356-468 10-118 (170)
142 2r9u_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 122.1 9.9 107 357-467 14-120 (174)
143 3g39_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 119.6 11.2 109 332-444 10-118 (170)
144 4gt6_A Cell surface protein; l 99.5 2.1E-11 7.1E-16 122.3 26.3 305 136-464 83-390 (394)
145 2r9u_A Variable lymphocyte rec 99.5 5.9E-13 2E-17 117.5 13.2 90 140-229 33-122 (174)
146 3un9_A NLR family member X1; l 99.4 7.9E-15 2.7E-19 145.8 0.1 182 307-489 72-283 (372)
147 3un9_A NLR family member X1; l 99.4 1.9E-14 6.3E-19 143.1 2.6 160 330-490 71-253 (372)
148 4gt6_A Cell surface protein; l 99.4 2.2E-11 7.5E-16 122.1 24.5 327 136-488 59-390 (394)
149 2ifg_A High affinity nerve gro 99.3 7.4E-12 2.5E-16 123.3 9.6 106 358-467 11-118 (347)
150 4h09_A Hypothetical leucine ri 99.3 2.2E-09 7.5E-14 106.9 26.2 287 137-436 43-341 (379)
151 2ifg_A High affinity nerve gro 99.2 2.4E-11 8.2E-16 119.6 10.9 104 111-226 12-117 (347)
152 4h09_A Hypothetical leucine ri 99.2 1.5E-09 5.1E-14 108.1 22.3 306 159-478 41-358 (379)
153 2ra8_A Uncharacterized protein 99.1 1.1E-10 3.8E-15 115.0 5.8 84 401-487 250-341 (362)
154 2ra8_A Uncharacterized protein 99.0 5.1E-10 1.7E-14 110.3 7.4 140 347-490 164-321 (362)
155 3rw6_A Nuclear RNA export fact 98.8 3.4E-11 1.2E-15 112.8 -8.0 64 162-226 168-234 (267)
156 1io0_A Tropomodulin; LRR prote 98.7 5.4E-09 1.9E-13 92.9 4.3 71 347-417 28-107 (185)
157 1io0_A Tropomodulin; LRR prote 98.7 9.8E-09 3.4E-13 91.2 3.9 91 326-416 31-136 (185)
158 3rw6_A Nuclear RNA export fact 98.5 1.8E-08 6.3E-13 94.2 0.8 79 401-482 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 2E-06 6.7E-11 74.8 4.7 34 308-341 62-95 (176)
160 3e4g_A ATP synthase subunit S, 98.1 2.4E-06 8.1E-11 74.2 5.1 84 331-414 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 7.3E-05 2.5E-09 66.1 5.1 69 349-417 35-112 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00014 4.9E-09 64.2 4.4 87 327-413 37-136 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0019 6.4E-08 53.1 5.4 57 406-465 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0052 1.8E-07 50.4 6.3 55 168-224 12-67 (130)
165 2lz0_A Uncharacterized protein 53.4 18 0.00063 27.3 4.7 38 158-196 14-51 (100)
166 2lz0_A Uncharacterized protein 44.6 33 0.0011 25.9 4.9 47 175-222 7-53 (100)
167 3ox7_P MH027; urokinase-type p 25.2 23 0.00079 18.0 0.7 10 63-72 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.8e-68 Score=579.40 Aligned_cols=461 Identities=33% Similarity=0.514 Sum_probs=379.3
Q ss_pred cCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccc---cCC-----
Q 035878 24 KASSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGT---LHD----- 95 (496)
Q Consensus 24 ~~~~~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~~~~~v~~L~L~~~~l~g~---~~~----- 95 (496)
+++..+|++||++||+++.|+..+++|+. + +|||+|.||+|+ .++|++|+|+++++.|. +++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~-~--------~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWSS-N--------KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSL 76 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCCT-T--------SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCCC-C--------CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhcc
Confidence 45556899999999999988338999974 3 799999999998 79999999999998886 332
Q ss_pred -----------------CCCCCCCCCceeccc---------------------eEEccCCcccccCCCCC----------
Q 035878 96 -----------------LDFSSFPNLLRFDVY---------------------ELDVSRNNMTGGIDPRL---------- 127 (496)
Q Consensus 96 -----------------~~l~~l~~L~~L~L~---------------------~L~Ls~n~l~~~ip~~~---------- 127 (496)
..++.+++|++|+|+ +||+++|.+.+.+|..+
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 256666666666665 45555555444443321
Q ss_pred ---------------------------------------------------------------CCCC--------CC---
Q 035878 128 ---------------------------------------------------------------FPDD--------KN--- 133 (496)
Q Consensus 128 ---------------------------------------------------------------~~~~--------~n--- 133 (496)
..+. .|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC
Confidence 1110 00
Q ss_pred --------------------------CCCCCCCCCcEEEccCCcCcccCCcCCCCC-CCCCEEEccCCCCcccCCccccC
Q 035878 134 --------------------------QPMTGLLGLKNFLLQDNMLSGRIPEEIGNC-KLLTLLALDGNFLSGPIPSSLGN 186 (496)
Q Consensus 134 --------------------------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~ 186 (496)
.....+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..|++
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 011145667777777888888888877664 88888888888888888888888
Q ss_pred CCCCceEecccCcCCcccCcc-CCCCCCCCEEECCCCCCcc-ccccccC---------------------------CCCC
Q 035878 187 LSDLAVLAVASNQLSGEIPAN-IGTLSKLTDLHLFINKLSG-LPPQVCK---------------------------GGKL 237 (496)
Q Consensus 187 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~-lp~~l~~---------------------------l~~L 237 (496)
+++|++|++++|.++|.+|.. +.++++|++|++++|++++ +|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 888888888888887777755 7777777777777777764 5544332 4567
Q ss_pred cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317 (496)
Q Consensus 238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (496)
++|++++|++++.+|..+.++++|++|++++|++++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 77777777777778888888888999999999888888888888899999999999999888988989999999999999
Q ss_pred cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChh
Q 035878 318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397 (496)
Q Consensus 318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 397 (496)
++++.+|..++.+++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..++.+++|++|++++|+++|.+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred hhh----------------------------------------------------------------------CCCCCCE
Q 035878 398 QIG----------------------------------------------------------------------ELRDLRS 407 (496)
Q Consensus 398 ~l~----------------------------------------------------------------------~~~~L~~ 407 (496)
.+. .+++|++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 542 2467899
Q ss_pred EeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878 408 LSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487 (496)
Q Consensus 408 L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 487 (496)
|++++|+++|.+|..+++++.|+.| +|++|+++|.+|..++++++|++|||++|+++|.+|..+..+++|++||+++|+
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFIL-NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EECcCCcccccCCHHHhccccCCEE-eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCC
Q 035878 488 LEGPLPDG 495 (496)
Q Consensus 488 l~g~ip~~ 495 (496)
++|+||..
T Consensus 716 l~g~iP~~ 723 (768)
T 3rgz_A 716 LSGPIPEM 723 (768)
T ss_dssp EEEECCSS
T ss_pred ccccCCCc
Confidence 99999975
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-59 Score=502.45 Aligned_cols=426 Identities=21% Similarity=0.299 Sum_probs=371.9
Q ss_pred HHHHHHHHHHhcCCC--CC-------CCCCCCCCCCCCCCCCCCCCccc---cceeeCCCCCEEEEEcCCCCCccccCCC
Q 035878 29 TETEALLKWKETLVN--QS-------IVQSWVIPASNSSNSTTPSPCRW---SGIVCNDAGSVTEINLANTGLAGTLHDL 96 (496)
Q Consensus 29 ~~~~~ll~~k~~~~~--~~-------~l~~W~~~~~~~~~~~~~~~C~w---~gv~c~~~~~v~~L~L~~~~l~g~~~~~ 96 (496)
.|++||.++|+++.+ .. ...+|+. .+|||.| .||+|+..++|++|+|+++++.|.+|+
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---------~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~- 99 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---------NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD- 99 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCCCC---------SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-
T ss_pred HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---------CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-
Confidence 799999999999853 11 1235543 2799999 999999889999999999999999998
Q ss_pred CCCCCCCCceeccceEEccCCcc---------------------------------------------------------
Q 035878 97 DFSSFPNLLRFDVYELDVSRNNM--------------------------------------------------------- 119 (496)
Q Consensus 97 ~l~~l~~L~~L~L~~L~Ls~n~l--------------------------------------------------------- 119 (496)
+++++++|++ |||++|.+
T Consensus 100 ~l~~L~~L~~-----L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 100 AIGQLTELEV-----LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp GGGGCTTCCE-----EESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred HHhcCccceE-----EECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 9999999994 55555543
Q ss_pred ---------------------cccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc-----------------CCcCCC
Q 035878 120 ---------------------TGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR-----------------IPEEIG 161 (496)
Q Consensus 120 ---------------------~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~ 161 (496)
+| ||.. ++++++|++|+|++|.+++. +|..++
T Consensus 175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~---------l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 175 IKKSSRITLKDTQIGQLSNNITF-VSKA---------VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGG---------GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred cccccccchhhhhhccccCCCcc-CCHH---------HhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 33 4443 78899999999999999986 999999
Q ss_pred --CCCCCCEEEccCCCCcccCCccccCCCCCceEecccCc-CCc-ccCccCCCC------CCCCEEECCCCCCccccc--
Q 035878 162 --NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQ-LSG-EIPANIGTL------SKLTDLHLFINKLSGLPP-- 229 (496)
Q Consensus 162 --~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~lp~-- 229 (496)
++++|++|++++|.+.+.+|..|+++++|++|++++|+ ++| .+|..++++ ++|++|++++|+++.+|.
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 99999999999999999999999999999999999998 998 889888776 999999999999999998
Q ss_pred cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCC-ccEEEcccCcccccCCcCcCCCC-
Q 035878 230 QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN-LTYIDLSYNRLQGEVSPKWGKCQ- 307 (496)
Q Consensus 230 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~- 307 (496)
.+..+++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+...+
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 89999999999999999999999 8899999999999999998 77888888999 999999999998 7788777655
Q ss_pred -CCCEEEccCCcccccCCcccC-------CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcC-C
Q 035878 308 -KLTLLGLAGNSIGGKIPAEIG-------SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGA-L 378 (496)
Q Consensus 308 -~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l 378 (496)
+|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.. .
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 899999999999999998888 7889999999999999544445667999999999999998 55554332 2
Q ss_pred -------CCCCEEEccCCcCCCCChhhhh--CCCCCCEEeccCccCCccCChhccCCccccccccc------cCCcCCcc
Q 035878 379 -------LNLDSLDLSMNRLSGPIPKQIG--ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL------SYNSLTGE 443 (496)
Q Consensus 379 -------~~L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L------s~N~l~~~ 443 (496)
++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++| ++ ++|++.+.
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L-~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF-GIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE-ECCSCBCTTCCBCCCC
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE-ECCCCcccccCccccc
Confidence 28999999999999 7888776 89999999999999997 89999999999999 99 56788889
Q ss_pred chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878 444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 489 (496)
+|..+.++++|++|+|++|++ +.+|..+. ++|+.||+++|++.
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 999999999999999999999 58888765 79999999999875
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.6e-57 Score=494.73 Aligned_cols=439 Identities=20% Similarity=0.274 Sum_probs=365.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCccc------------cceeeCCCCCEEEEEcCCCCCccccCC
Q 035878 28 LTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRW------------SGIVCNDAGSVTEINLANTGLAGTLHD 95 (496)
Q Consensus 28 ~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~~~~C~w------------~gv~c~~~~~v~~L~L~~~~l~g~~~~ 95 (496)
.+|++||++||+++.++ +|+.+++. + ...+++|.| .||+|+..++|++|+|+++++.|.+|+
T Consensus 268 ~~d~~ALl~~k~~l~~~----~W~~~~~~-~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK----NWRYYSGT-I-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHTTGG----GCCCCCSS-C-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred hHHHHHHHHHHHHcCCC----CCCcCCCc-c-cccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 38999999999999654 89753210 0 011334999 999999889999999999999999998
Q ss_pred CCCCCCCCCceeccceEEc-cCCcccccCCCCCCCC--------------------------------------------
Q 035878 96 LDFSSFPNLLRFDVYELDV-SRNNMTGGIDPRLFPD-------------------------------------------- 130 (496)
Q Consensus 96 ~~l~~l~~L~~L~L~~L~L-s~n~l~~~ip~~~~~~-------------------------------------------- 130 (496)
+++++++|+ +||| ++|.++|..|......
T Consensus 342 -~l~~L~~L~-----~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 342 -AIGQLTELK-----VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp -GGGGCTTCC-----EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred -HHhccccce-----EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 999999999 6777 7777766533221000
Q ss_pred --C---------------CC------CCCCCCCCCcEEEccCCcCcc-----------------cCCcCCC--CCCCCCE
Q 035878 131 --D---------------KN------QPMTGLLGLKNFLLQDNMLSG-----------------RIPEEIG--NCKLLTL 168 (496)
Q Consensus 131 --~---------------~n------~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~ 168 (496)
. .| ..++++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 0 00 237889999999999999998 3888888 9999999
Q ss_pred EEccCCCCcccCCccccCCCCCceEecccCc-CCc-ccCccCCC-------CCCCCEEECCCCCCccccc--cccCCCCC
Q 035878 169 LALDGNFLSGPIPSSLGNLSDLAVLAVASNQ-LSG-EIPANIGT-------LSKLTDLHLFINKLSGLPP--QVCKGGKL 237 (496)
Q Consensus 169 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~-------l~~L~~L~L~~n~l~~lp~--~l~~l~~L 237 (496)
|+|++|.+.+.+|..|+++++|++|++++|+ ++| .+|..+++ +++|++|++++|+++.+|. .+..+++|
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTC
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCC
Confidence 9999999999999999999999999999998 888 78875554 4599999999999999998 89999999
Q ss_pred cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCC-ccEEEcccCcccccCCcCcCCCCC--CCEEEc
Q 035878 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN-LTYIDLSYNRLQGEVSPKWGKCQK--LTLLGL 314 (496)
Q Consensus 238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~--L~~L~L 314 (496)
+.|++++|+++ .+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+. |+.|++
T Consensus 576 ~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 576 GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp CEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred CEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence 99999999998 778 8899999999999999998 77888888898 999999999998 77887777654 999999
Q ss_pred cCCcccccCCccc---C--CCCCCCEEEccCCcCccccchh-hcCCCCCCEEeccCCcCccccchhhcCC--------CC
Q 035878 315 AGNSIGGKIPAEI---G--SLSQLVVLDLSSNQLSGEIPAQ-IGNLTELSTLSLNGNDISGPIPEEIGAL--------LN 380 (496)
Q Consensus 315 ~~n~l~~~~~~~l---~--~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------~~ 380 (496)
++|++++.+|... . .+++|++|++++|.++ .+|.. +..+++|++|+|++|+++ .+|..+... ++
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence 9999988766432 2 3458999999999999 55555 458899999999999998 666654432 38
Q ss_pred CCEEEccCCcCCCCChhhhh--CCCCCCEEeccCccCCccCChhccCCccccccccccC------CcCCccchhhhcCCC
Q 035878 381 LDSLDLSMNRLSGPIPKQIG--ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY------NSLTGEIPAQLEKLT 452 (496)
Q Consensus 381 L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~------N~l~~~~p~~l~~l~ 452 (496)
|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.| +|++ |++.+.+|..+.+++
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L-~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF-GIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE-ECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE-ECCCCCCcccccccccChHHHhcCC
Confidence 999999999999 7788886 89999999999999996 78889999999999 9976 788889999999999
Q ss_pred CCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878 453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490 (496)
Q Consensus 453 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 490 (496)
+|++|+|++|++ +.+|..+. ++|+.|||++|++..
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 999999999999 68888765 699999999998853
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-54 Score=470.54 Aligned_cols=406 Identities=35% Similarity=0.526 Sum_probs=347.7
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCC-C--------CC-------CCCCCC
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPD-D--------KN-------QPMTGL 139 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~-~--------~n-------~~l~~l 139 (496)
..++++|++++|.+.|.++. . .+++|+ +|++++|.++|.+|..++.. . .| ..++++
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~-~--~l~~L~-----~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPP-L--PLKSLQ-----YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp CSSCCEEECCSSCCEESCCC-C--CCTTCC-----EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred CCCCCEEECCCCcccCccCc-c--ccCCCC-----EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 34688888888888877665 2 666666 56667777777777665432 1 11 235667
Q ss_pred CCCcEEEccCCcCcccCCcC-CCCCCCCCEEEccCCCCcccCCccccCCC-CCceEecccCcCCcccCccCCC--CCCCC
Q 035878 140 LGLKNFLLQDNMLSGRIPEE-IGNCKLLTLLALDGNFLSGPIPSSLGNLS-DLAVLAVASNQLSGEIPANIGT--LSKLT 215 (496)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~--l~~L~ 215 (496)
++|++|++++|.++|.+|.. ++++++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 77777777777777666655 67777777777777777777777777766 7777777777777777777666 78899
Q ss_pred EEECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCc
Q 035878 216 DLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNR 294 (496)
Q Consensus 216 ~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 294 (496)
+|++++|++++ +|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 99999999987 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchh
Q 035878 295 LQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374 (496)
Q Consensus 295 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 374 (496)
+++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred hc----------------------------------------------------------------------CCCCCCEE
Q 035878 375 IG----------------------------------------------------------------------ALLNLDSL 384 (496)
Q Consensus 375 ~~----------------------------------------------------------------------~l~~L~~L 384 (496)
+. .+++|++|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 43 34679999
Q ss_pred EccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcC
Q 035878 385 DLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464 (496)
Q Consensus 385 ~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 464 (496)
|+++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|+.| ||++|+++|.+|..++++++|++||+++|++
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L-dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL-DLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE-ECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE-ECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CcccchhhhcCCCCCEEeCcCCC-Cccc
Q 035878 465 SGEIPASLSSMLSLVAVNLSYNN-LEGP 491 (496)
Q Consensus 465 ~~~~p~~l~~l~~L~~L~ls~N~-l~g~ 491 (496)
+|.+|.. ..+.++....+.+|+ ++|.
T Consensus 717 ~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 717 SGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp EEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred cccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 9999975 234455566677885 6764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.5e-50 Score=428.22 Aligned_cols=255 Identities=23% Similarity=0.251 Sum_probs=118.3
Q ss_pred CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcC-cCCCCCCCEEEc
Q 035878 236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGL 314 (496)
Q Consensus 236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~L~~L~L 314 (496)
+|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++.. +..+++|++|++
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 3333333333333 23333334444444444444444333333333444444444444433333222 344444444444
Q ss_pred cCCcccccC--CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccch-hhcCCCCCCEEEccCCcC
Q 035878 315 AGNSIGGKI--PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE-EIGALLNLDSLDLSMNRL 391 (496)
Q Consensus 315 ~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l 391 (496)
++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 444444332 33444444455555555544444444444455555555555554443332 244455555555555555
Q ss_pred CCCChhhhhCCCCCCEEeccCccCCcc---CChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878 392 SGPIPKQIGELRDLRSLSLSQNNLNGT---IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI 468 (496)
Q Consensus 392 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 468 (496)
.+..|..+..+++|++|++++|++++. .+..+..+++|++| ++++|++++..|..|.++++|++|++++|++++..
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL-VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE-ECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 544444455555555555555555431 12334445555555 55555555444555555555555555555555555
Q ss_pred chhhhcCCCCCEEeCcCCCCcccCC
Q 035878 469 PASLSSMLSLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 469 p~~l~~l~~L~~L~ls~N~l~g~ip 493 (496)
|..+..++.| +|++++|++++.+|
T Consensus 517 ~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 517 IEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp GGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred hhHhCccccc-EEECcCCcccccCH
Confidence 5555555555 55555555554443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-49 Score=421.86 Aligned_cols=415 Identities=21% Similarity=0.210 Sum_probs=347.7
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccc-------------------eEEccCCcccccCCCCCCCCC-----
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVY-------------------ELDVSRNNMTGGIDPRLFPDD----- 131 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~-------------------~L~Ls~n~l~~~ip~~~~~~~----- 131 (496)
+..+++|+++++.+++..+. +|.++++|++|+++ +|++++|.+++..|..+..+.
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 35789999999999866555 89999999977766 677777777766665544332
Q ss_pred ---CC-------CCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCc--eEecccCc
Q 035878 132 ---KN-------QPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLA--VLAVASNQ 199 (496)
Q Consensus 132 ---~n-------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L~~n~ 199 (496)
.| ..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+ +|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 11 3355666666666666666653333344466677777766666655555566666655 55555554
Q ss_pred CCc---------------------------------------------------------------------------cc
Q 035878 200 LSG---------------------------------------------------------------------------EI 204 (496)
Q Consensus 200 l~~---------------------------------------------------------------------------~~ 204 (496)
+++ ..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 443 22
Q ss_pred CccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcccc-ccCCCC
Q 035878 205 PANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQ-DFGIYP 283 (496)
Q Consensus 205 p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~ 283 (496)
+..|..+++|++|++++|+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 3346778999999999999999999999999999999999999988888999999999999999999877665 488999
Q ss_pred CccEEEcccCcccccC--CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch-hhcCCCCCCEE
Q 035878 284 NLTYIDLSYNRLQGEV--SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA-QIGNLTELSTL 360 (496)
Q Consensus 284 ~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L 360 (496)
+|++|++++|.+++.. +..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+. .+..+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 9999999999998776 77899999999999999999999999999999999999999999877654 48899999999
Q ss_pred eccCCcCccccchhhcCCCCCCEEEccCCcCCCC---ChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccC
Q 035878 361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP---IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY 437 (496)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~ 437 (496)
++++|.+++..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+..+++|++| ++++
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~ 509 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV-DLSH 509 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE-ECCC
Confidence 9999999998999999999999999999999863 33568899999999999999999999999999999999 9999
Q ss_pred CcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878 438 NSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 438 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 493 (496)
|++++..|..+.++++| +|++++|++++..|..+..+++|+++++++|++++..|
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999 99999999999999999999999999999999988655
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-49 Score=418.72 Aligned_cols=398 Identities=23% Similarity=0.212 Sum_probs=242.1
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR 155 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~ 155 (496)
..++++|+|+++.+++..+. .|.++++|+ +|++++|.+++..|.. |+++++|++|++++|.+++.
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~l~~i~~~~---------~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSY-SFSNFSELQ-----WLDLSRCEIETIEDKA---------WHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCC-----EEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCCCC
T ss_pred CCCcCEEECCCCCcCEeChh-hccCCccCc-----EEeCCCCcccccCHHH---------hhchhhcCEeECCCCccccc
Confidence 46799999999999876665 899999999 6778888888655554 56677777777777777766
Q ss_pred CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCcccc-c----
Q 035878 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGLP-P---- 229 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~lp-~---- 229 (496)
.|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++++ .
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 67777777777777777777776665667777777777777777764 45777777777777777777666532 2
Q ss_pred -----------------------cccCCCCCcEEecCCCcccC-------------------------------------
Q 035878 230 -----------------------QVCKGGKLINFTASFNHFSG------------------------------------- 249 (496)
Q Consensus 230 -----------------------~l~~l~~L~~L~l~~n~l~~------------------------------------- 249 (496)
..+...+|+.|++++|.+++
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 22222234444444443220
Q ss_pred -------------------------------------------CCCcccCCCCCCcEEEccCCCCCCcccc---------
Q 035878 250 -------------------------------------------PIPTSLKSCSSLYRVRLESNELTGDLEQ--------- 277 (496)
Q Consensus 250 -------------------------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~~~--------- 277 (496)
.+| .+..+++|++|++++|.+ +.+|.
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L 333 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSL 333 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEE
T ss_pred hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCcccee
Confidence 011 233334444555555444 23331
Q ss_pred -----------ccCCCCCccEEEcccCccccc--CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc
Q 035878 278 -----------DFGIYPNLTYIDLSYNRLQGE--VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS 344 (496)
Q Consensus 278 -----------~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 344 (496)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.
T Consensus 334 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 334 TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp EEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE
T ss_pred eccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccC
Confidence 122334444444444444433 23444445555555555555443 3345555566666666666665
Q ss_pred cccc-hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCC-CChhhhhCCCCCCEEeccCccCCccCChh
Q 035878 345 GEIP-AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG-PIPKQIGELRDLRSLSLSQNNLNGTIPFQ 422 (496)
Q Consensus 345 ~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 422 (496)
+..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 5544 455566666666666666665566666666666666666666665 24555666666666666666666666666
Q ss_pred ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCC-CCCEEeCcCCCCcccCC
Q 035878 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-SLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip 493 (496)
+..+++|++| ++++|++++.+|..+.++++|++|++++|+++ .+|..+..++ +|++|++++|++.+..|
T Consensus 493 ~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 493 FDTLHRLQLL-NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTCTTCCEE-ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred hcccccCCEE-ECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 6666666666 66666666656666666666666666666666 4555566654 36666666666665443
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-48 Score=427.55 Aligned_cols=411 Identities=21% Similarity=0.206 Sum_probs=284.3
Q ss_pred ccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEE
Q 035878 66 CRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNF 145 (496)
Q Consensus 66 C~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L 145 (496)
|.|..|.+ .+.++++|+|++|.+++..+. +|..+++|+ +|||++|.+.+.+++.. |+++++|++|
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~-----~LdLs~n~~~~~i~~~~--------f~~L~~L~~L 78 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQ-----LLELGSQYTPLTIDKEA--------FRNLPNLRIL 78 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCS-----EEEECTTCCCCEECTTT--------TSSCTTCCEE
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCe-----EEeCCCCCCccccCHHH--------hcCCCCCCEE
Confidence 56888888 778999999999999876666 899999999 78888998877885542 7888999999
Q ss_pred EccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCcc--ccCCCCCceEecccCcCCcccC-ccCCCCCCCCEEECCCC
Q 035878 146 LLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSS--LGNLSDLAVLAVASNQLSGEIP-ANIGTLSKLTDLHLFIN 222 (496)
Q Consensus 146 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n 222 (496)
+|++|.+.+..|..|+++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 99999999888999999999999999999998766665 8889999999999999887654 57888999999999999
Q ss_pred CCcc-ccccccCC--CCCcEEecCCCcccCCCCcccCCC-----------------------------------------
Q 035878 223 KLSG-LPPQVCKG--GKLINFTASFNHFSGPIPTSLKSC----------------------------------------- 258 (496)
Q Consensus 223 ~l~~-lp~~l~~l--~~L~~L~l~~n~l~~~~p~~l~~l----------------------------------------- 258 (496)
.+++ .+..+..+ ++|+.|+++.|.+.+..|..+..+
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 8877 44444333 444444444444444333333222
Q ss_pred ---------------------------CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCE
Q 035878 259 ---------------------------SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311 (496)
Q Consensus 259 ---------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 311 (496)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 35556666666665555555666666666666666666666666666666666
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc-------------------
Q 035878 312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP------------------- 372 (496)
Q Consensus 312 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~------------------- 372 (496)
|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++...
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence 6666666666656666666666666666666665555556666666666666666543100
Q ss_pred ---------------------hhhcCCCCCCEEEccCCcCCCCChh-hhhCCCCCCEEeccCccCC-----ccCChhccC
Q 035878 373 ---------------------EEIGALLNLDSLDLSMNRLSGPIPK-QIGELRDLRSLSLSQNNLN-----GTIPFQIGN 425 (496)
Q Consensus 373 ---------------------~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~-----~~~p~~~~~ 425 (496)
..+..+++|++|++++|++++..+. .+..+++|++|++++|.++ +..+..+..
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence 0112334444444444444432211 1223444555555555544 233345677
Q ss_pred CccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 426 LVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 426 l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
+++|+.| +|++|++++..|..|.++++|++|+|++|++++..|..+. ++|+.||+++|+++|.+|.
T Consensus 479 l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 479 LSHLQVL-YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp BCCEECC-CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccEE-ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 7888888 8888888888888888888899999999988877666665 7888888888888888875
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-49 Score=421.11 Aligned_cols=366 Identities=22% Similarity=0.288 Sum_probs=334.4
Q ss_pred eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCc---------------------------------------
Q 035878 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNM--------------------------------------- 151 (496)
Q Consensus 111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~--------------------------------------- 151 (496)
.|+|++|.+.|.+|+. ++++++|++|+|++|.
T Consensus 85 ~L~L~~~~l~g~lp~~---------l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~ 155 (636)
T 4eco_A 85 GLSLEGFGASGRVPDA---------IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155 (636)
T ss_dssp EEECTTSCCEEEECGG---------GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred EEEecCcccCCcCChH---------HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCch
Confidence 7999999999999987 7899999999999884
Q ss_pred ---------------------------------------CcccCCcCCCCCCCCCEEEccCCCCccc-------------
Q 035878 152 ---------------------------------------LSGRIPEEIGNCKLLTLLALDGNFLSGP------------- 179 (496)
Q Consensus 152 ---------------------------------------l~~~~~~~l~~l~~L~~L~Ls~n~l~~~------------- 179 (496)
++| +|..++++++|++|+|++|.+++.
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence 345 788899999999999999999986
Q ss_pred ----CCcccc--CCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCC-Ccc--ccccccCC------CCCcEEecCC
Q 035878 180 ----IPSSLG--NLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINK-LSG--LPPQVCKG------GKLINFTASF 244 (496)
Q Consensus 180 ----~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~--lp~~l~~l------~~L~~L~l~~ 244 (496)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ +|..++.+ ++|++|++++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 999999 99999999999999999999999999999999999998 986 99888876 9999999999
Q ss_pred CcccCCCCc--ccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCC-CCEEEccCCcccc
Q 035878 245 NHFSGPIPT--SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK-LTLLGLAGNSIGG 321 (496)
Q Consensus 245 n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~L~~n~l~~ 321 (496)
|+++ .+|. .+.++++|++|++++|+++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 9999 8898 89999999999999999998898 8999999999999999999 78888999999 999999999999
Q ss_pred cCCcccCCCC--CCCEEEccCCcCccccchhhc-------CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878 322 KIPAEIGSLS--QLVVLDLSSNQLSGEIPAQIG-------NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS 392 (496)
Q Consensus 322 ~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 392 (496)
.+|..+..++ +|++|++++|.+++.+|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 7888887765 899999999999999998888 8889999999999999544444566999999999999999
Q ss_pred CCChhhh-hC-------CCCCCEEeccCccCCccCChhcc--CCccccccccccCCcCCccchhhhcCCCCCCEEEc---
Q 035878 393 GPIPKQI-GE-------LRDLRSLSLSQNNLNGTIPFQIG--NLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL--- 459 (496)
Q Consensus 393 ~~~~~~l-~~-------~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L--- 459 (496)
.+|... .. +++|++|++++|+++ .+|..+. .+++|++| +|++|++++ +|..+.++++|++|+|
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L-~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI-DLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE-ECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE-ECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 565443 22 239999999999999 8898887 99999999 999999997 8999999999999999
Q ss_pred ---ccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCCC
Q 035878 460 ---SHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495 (496)
Q Consensus 460 ---s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 495 (496)
++|++.+.+|..+..+++|++|++++|++ +.||..
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 56889999999999999999999999999 899863
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-47 Score=404.63 Aligned_cols=398 Identities=22% Similarity=0.210 Sum_probs=300.6
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR 155 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~ 155 (496)
+.+++.|+++++.+++..+. +|..+++|+ +||+++|.+++..|.. |+++++|++|++++|.+++.
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~i~~i~~~~---------~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSY-SFFSFPELQ-----VLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCEEECCSCCCCEECTT-TTTTCSSCC-----EEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCCEE
T ss_pred cccccEEEccCCccCccChh-HhhCCCCce-----EEECCCCcCCccCccc---------ccCchhCCEEeCcCCcCCcc
Confidence 45799999999999866555 899999998 6788888888544443 67778888888888888877
Q ss_pred CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccc-cccccC
Q 035878 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGL-PPQVCK 233 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~ 233 (496)
.|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|+++++ |..+..
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 77778888888888888888776555567788888888888887775 3577777888888888888877763 333444
Q ss_pred CCCC----cEEecCCCcccCC-----------------------------------------------------------
Q 035878 234 GGKL----INFTASFNHFSGP----------------------------------------------------------- 250 (496)
Q Consensus 234 l~~L----~~L~l~~n~l~~~----------------------------------------------------------- 250 (496)
+++| +.+++++|.+++.
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 4444 4555555544332
Q ss_pred ----------------------CCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc------------
Q 035878 251 ----------------------IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ------------ 296 (496)
Q Consensus 251 ----------------------~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~------------ 296 (496)
+|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~ 329 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKR 329 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCE
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCE
Confidence 2233344555666666666555 244444444 5555555555444
Q ss_pred ---------ccCCcCcCCCCCCCEEEccCCcccccC--CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCC
Q 035878 297 ---------GEVSPKWGKCQKLTLLGLAGNSIGGKI--PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN 365 (496)
Q Consensus 297 ---------~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 365 (496)
+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+. +..+++|++|++++|
T Consensus 330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 22221 45667777777777776543 55667777888888888887754443 788888888888888
Q ss_pred cCccccc-hhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC-ccCChhccCCccccccccccCCcCCcc
Q 035878 366 DISGPIP-EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN-GTIPFQIGNLVGLQDLLDLSYNSLTGE 443 (496)
Q Consensus 366 ~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~LL~Ls~N~l~~~ 443 (496)
.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++| ++++|++++.
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L-~l~~n~l~~~ 485 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQL 485 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEE
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE-ECCCCccccC
Confidence 8886655 46788899999999999999888888999999999999999997 5789899999999999 9999999988
Q ss_pred chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
.|..+.++++|++|++++|++++..|..|..+++|+.|++++|+++|.+|.
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 899999999999999999999988888899999999999999999999885
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.1e-47 Score=408.08 Aligned_cols=400 Identities=24% Similarity=0.255 Sum_probs=244.4
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR 155 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~ 155 (496)
..++++|+|+++.+++..+. .|.++++|+ +|++++|.+++..|.. ++++++|++|++++|.+++.
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAA-NFTRYSQLT-----SLDVGFNTISKLEPEL---------CQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGG-GGGGGTTCS-----EEECCSSCCCCCCTTH---------HHHCTTCCEEECCSSCCCCC
T ss_pred CCCCcEEECCCCCCCCcCHH-HHhCCCcCc-----EEECCCCccCccCHHH---------HhcccCcCEEECCCCccCcc
Confidence 45799999999999865544 789999999 5666777776554543 45566666666666666644
Q ss_pred CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccc---cc
Q 035878 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ---VC 232 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~---l~ 232 (496)
.+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++++.. ..
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 444566666666666666666655555566666666666666666655555566666666666666666553332 12
Q ss_pred CCCCCcEEecCCCcccCCCC---------------------------------------------------cccCCCCC-
Q 035878 233 KGGKLINFTASFNHFSGPIP---------------------------------------------------TSLKSCSS- 260 (496)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~p---------------------------------------------------~~l~~l~~- 260 (496)
.+++|++|++++|.+++..| ..+.+++.
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~ 248 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248 (680)
T ss_dssp TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence 33555555555555554444 34433322
Q ss_pred -CcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccc-----cCCc----ccCCC
Q 035878 261 -LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG-----KIPA----EIGSL 330 (496)
Q Consensus 261 -L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~----~l~~l 330 (496)
|++|++++|.+++..+..++.+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .+..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 5555555555555555555555556666666655555555555555566666655543332 1222 45666
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCCEEeccCCc----------------------------CccccchhhcCCCCCC
Q 035878 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND----------------------------ISGPIPEEIGALLNLD 382 (496)
Q Consensus 331 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~----------------------------l~~~~~~~~~~l~~L~ 382 (496)
++|++|++++|.+++..+..+..+++|++|++++|. +++..|..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 777777777777776666666666666666665543 2233334444445555
Q ss_pred EEEccCCcCCCCCh-hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC--ccchhhhcCCCCCCEEEc
Q 035878 383 SLDLSMNRLSGPIP-KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT--GEIPAQLEKLTSLQSMNL 459 (496)
Q Consensus 383 ~L~Ls~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~--~~~p~~l~~l~~L~~L~L 459 (496)
+|++++|++.+.+| ..+.++++|++|++++|++.+..+..+..+++|+++ ++++|.++ +.+|..+.++++|++|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL-MLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE-ECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc-hhccccccccccCCcccccCCCCCEEEC
Confidence 55555555544333 344455555555555555554445555555555555 56666554 456777888888888888
Q ss_pred ccCcCCcccchhhhcCCCCCEEeCcCCCCccc
Q 035878 460 SHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 491 (496)
Q Consensus 460 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 491 (496)
++|++++..|..|..+++|++|++++|++++.
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 88888877777788888888888888888753
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.3e-48 Score=406.75 Aligned_cols=400 Identities=22% Similarity=0.245 Sum_probs=290.8
Q ss_pred CccccceeeCC------------CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCC
Q 035878 65 PCRWSGIVCND------------AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDK 132 (496)
Q Consensus 65 ~C~w~gv~c~~------------~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~ 132 (496)
.|.|.|+ |+. ..++++|+++++.+++..+. .|..+++|+ +|++++|.+++..|..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~i~~~~~~~------ 69 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQ-----VLILKSSRINTIEGDA------ 69 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCC-----EEECTTSCCCEECTTT------
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCccc-----EEECCCCCcCccChhh------
Confidence 4889888 752 24799999999999876666 899999999 7888999999766655
Q ss_pred CCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccC-ccCCC
Q 035878 133 NQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIP-ANIGT 210 (496)
Q Consensus 133 n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~ 210 (496)
|+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.+
T Consensus 70 ---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 70 ---FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp ---TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred ---ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 6888999999999999998777778999999999999999886 457788899999999999998544554 57888
Q ss_pred CCCCCEEECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCCcc-cCCCCCCcEEEccCCCCCCcc--c----------
Q 035878 211 LSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTS-LKSCSSLYRVRLESNELTGDL--E---------- 276 (496)
Q Consensus 211 l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--~---------- 276 (496)
+++|++|++++|++++ +|..+..+++|++|+++.|.+.. +|.. +..+++|++|++++|++++.. +
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 9999999999999888 77777776666666666665542 2222 234556666666666555421 0
Q ss_pred -------------------cccCCC-------------------------------------------------------
Q 035878 277 -------------------QDFGIY------------------------------------------------------- 282 (496)
Q Consensus 277 -------------------~~~~~l------------------------------------------------------- 282 (496)
..+..+
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 000111
Q ss_pred ----CCccEEEcccCcccccCCcCc-CCCCCCCEEEccCCcccccCC---cccCCCCCCCEEEccCCcCccccc--hhhc
Q 035878 283 ----PNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIP---AEIGSLSQLVVLDLSSNQLSGEIP--AQIG 352 (496)
Q Consensus 283 ----~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~ 352 (496)
++|++|++++|.+. .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+.
T Consensus 306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence 23444444444443 233333 356677777777777766543 235666777777777777764322 3466
Q ss_pred CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccc
Q 035878 353 NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL 432 (496)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 432 (496)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+ .++|++|++++|++++.+ ..+++|++|
T Consensus 385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L 456 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQEL 456 (549)
T ss_dssp GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEE
Confidence 6777777777777776 566666677777777777777763 33322 256777777777777542 478899999
Q ss_pred ccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 433 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 493 (496)
++++|+++ .+|. ...+++|++|+|++|++++.+|..|..+++|++|++++|+++|.+|
T Consensus 457 -~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 457 -YISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -ECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -ECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999 6776 5679999999999999999989999999999999999999998876
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.2e-46 Score=402.14 Aligned_cols=173 Identities=25% Similarity=0.285 Sum_probs=93.9
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCccccc-hhhcCCCCCCEEeccCCcCc--------------------------ccc
Q 035878 319 IGGKIPAEIGSLSQLVVLDLSSNQLSGEIP-AQIGNLTELSTLSLNGNDIS--------------------------GPI 371 (496)
Q Consensus 319 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~--------------------------~~~ 371 (496)
+++..|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|+++ +.+
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 333334444455555555555555544333 33444444444444444433 234
Q ss_pred chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCC--------hhccCCccccccccccCCcCCcc
Q 035878 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP--------FQIGNLVGLQDLLDLSYNSLTGE 443 (496)
Q Consensus 372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~LL~Ls~N~l~~~ 443 (496)
|..+..+++|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++| ++++|+++..
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L-~L~~N~l~~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL-NLESNGFDEI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE-ECCSSCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE-ECCCCCCCCC
Confidence 5555566666666666666665555556666666666666666653211 124555666666 6666666632
Q ss_pred chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccC
Q 035878 444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 492 (496)
Q Consensus 444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 492 (496)
.+..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 2334666666666666666666555555566666666666666666544
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-46 Score=399.10 Aligned_cols=374 Identities=21% Similarity=0.225 Sum_probs=286.7
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR 155 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~ 155 (496)
..++++|+++++.+++..+. .|.++++|+ +|++++|.+++..|.. |+++++|++|++++|.+++.
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~-----~L~Ls~n~l~~~~p~~---------~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDK-AWHGLHHLS-----NLILTGNPIQSFSPGS---------FSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp CTTCCEEECTTCCCCEECTT-TTTTCTTCC-----EEECTTCCCCCCCTTS---------STTCTTCCEEECTTSCCCCS
T ss_pred CccCcEEeCCCCcccccCHH-HhhchhhcC-----EeECCCCcccccChhh---------cCCcccCCEEEccCCccccc
Confidence 45789999999998865555 788888888 6778888888666665 45566666666666666655
Q ss_pred CCcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccCccCC-------------------------
Q 035878 156 IPEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIG------------------------- 209 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~------------------------- 209 (496)
.+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..|..++
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcc
Confidence 55556666666666666666554 3455666666666666666555543332111
Q ss_pred --------------------------------------------------------------------------------
Q 035878 210 -------------------------------------------------------------------------------- 209 (496)
Q Consensus 210 -------------------------------------------------------------------------------- 209 (496)
T Consensus 200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence
Q ss_pred ---CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCc--------------------ccCCCCCCcEEEc
Q 035878 210 ---TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT--------------------SLKSCSSLYRVRL 266 (496)
Q Consensus 210 ---~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~--------------------~l~~l~~L~~L~L 266 (496)
.+++|++|++++|.+..+| .+..+++|++|++++|.+ +.+|. .+..+++|++|++
T Consensus 280 ~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 357 (606)
T 3vq2_A 280 KFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDL 357 (606)
T ss_dssp SCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred ccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence 1122223333333332233 333444555555555544 23331 3556778888888
Q ss_pred cCCCCCCc--cccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcC
Q 035878 267 ESNELTGD--LEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQL 343 (496)
Q Consensus 267 ~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l 343 (496)
++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 88888765 36778899999999999999986 56889999999999999999998877 6899999999999999999
Q ss_pred ccccchhhcCCCCCCEEeccCCcCcc-ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChh
Q 035878 344 SGEIPAQIGNLTELSTLSLNGNDISG-PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ 422 (496)
Q Consensus 344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 422 (496)
++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..+.++++|++|++++|++++.+|..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 99899999999999999999999997 47889999999999999999999988999999999999999999999999999
Q ss_pred ccCCccccccccccCCcCCccchhhhcCCC-CCCEEEcccCcCCcccc
Q 035878 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLT-SLQSMNLSHNNLSGEIP 469 (496)
Q Consensus 423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 469 (496)
+.++++|++| ++++|+++ .+|..+..++ +|++|++++|++....+
T Consensus 517 ~~~l~~L~~L-~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 517 YNQLYSLSTL-DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTCTTCCEE-ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCCCcCCEE-ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999 99999999 7888899987 59999999999987544
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-46 Score=411.29 Aligned_cols=367 Identities=22% Similarity=0.318 Sum_probs=327.9
Q ss_pred cceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEc-cCCcCccc--------------------------------
Q 035878 109 VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLL-QDNMLSGR-------------------------------- 155 (496)
Q Consensus 109 L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L-~~n~l~~~-------------------------------- 155 (496)
+..|+|++|.+.|.+|+. ++++++|++|+| ++|.++|.
T Consensus 325 V~~L~Ls~~~L~G~ip~~---------l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~ 395 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDA---------IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395 (876)
T ss_dssp EEEEECTTTCCEEEECGG---------GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred EEEEECccCCCCCcCchH---------HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence 338999999999999987 789999999999 77755443
Q ss_pred --------------------------------------------CCcCCCCCCCCCEEEccCCCCcc-------------
Q 035878 156 --------------------------------------------IPEEIGNCKLLTLLALDGNFLSG------------- 178 (496)
Q Consensus 156 --------------------------------------------~~~~l~~l~~L~~L~Ls~n~l~~------------- 178 (496)
+|..|+++++|++|+|++|.+++
T Consensus 396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475 (876)
T ss_dssp GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence 78889999999999999999998
Q ss_pred ----cCCcccc--CCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCC-Ccc--ccccccCC-------CCCcEEec
Q 035878 179 ----PIPSSLG--NLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINK-LSG--LPPQVCKG-------GKLINFTA 242 (496)
Q Consensus 179 ----~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~--lp~~l~~l-------~~L~~L~l 242 (496)
.+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ +|..++.+ ++|++|++
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 4999988 99999999999999999999999999999999999998 886 88766555 49999999
Q ss_pred CCCcccCCCCc--ccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCC-CCEEEccCCcc
Q 035878 243 SFNHFSGPIPT--SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK-LTLLGLAGNSI 319 (496)
Q Consensus 243 ~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~L~~n~l 319 (496)
++|+++ .+|. .+.++++|++|++++|.++ .+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.+
T Consensus 556 s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred eCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 999999 8888 8999999999999999999 777 8999999999999999999 88888999999 99999999999
Q ss_pred cccCCcccCCCCC--CCEEEccCCcCccccchh---hc--CCCCCCEEeccCCcCccccchhh-cCCCCCCEEEccCCcC
Q 035878 320 GGKIPAEIGSLSQ--LVVLDLSSNQLSGEIPAQ---IG--NLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRL 391 (496)
Q Consensus 320 ~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l 391 (496)
+ .+|..+..++. |+.|++++|++.+.+|.. +. .+++|++|++++|+++ .+|..+ ..+++|++|++++|++
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 9 78888877654 999999999999876543 22 3458999999999999 566655 4899999999999999
Q ss_pred CCCChhhhhC--------CCCCCEEeccCccCCccCChhcc--CCccccccccccCCcCCccchhhhcCCCCCCEEEccc
Q 035878 392 SGPIPKQIGE--------LRDLRSLSLSQNNLNGTIPFQIG--NLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461 (496)
Q Consensus 392 ~~~~~~~l~~--------~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 461 (496)
+ .+|..+.. +++|++|+|++|+++ .+|..+. .+++|+.| +|++|++++ +|..+.++++|++|+|++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L-~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM-DVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE-ECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE-EeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 9 56654433 339999999999999 8898887 99999999 999999997 899999999999999976
Q ss_pred ------CcCCcccchhhhcCCCCCEEeCcCCCCcccCCCC
Q 035878 462 ------NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495 (496)
Q Consensus 462 ------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 495 (496)
|++.+.+|..|..+++|+.|+|++|++ |.||..
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 889999999999999999999999999 899963
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-45 Score=380.54 Aligned_cols=359 Identities=21% Similarity=0.202 Sum_probs=236.9
Q ss_pred eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC-CcCCCCCCCCCEEEccCCCCcccCCccccCCCC
Q 035878 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI-PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSD 189 (496)
Q Consensus 111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 189 (496)
+||+++|.+++..|.. |+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++
T Consensus 34 ~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 34 YVDLSLNSIAELNETS---------FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp EEECCSSCCCEECTTT---------TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred EEEecCCccCcCChhH---------hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 7888888888666655 678888888888888887554 567888888888888888888778888888888
Q ss_pred CceEecccCcCCcccCcc--CCCCCCCCEEECCCCCCccc-ccc-ccCCCCCcEEecCCCcccCCCCcccCCC--CCCcE
Q 035878 190 LAVLAVASNQLSGEIPAN--IGTLSKLTDLHLFINKLSGL-PPQ-VCKGGKLINFTASFNHFSGPIPTSLKSC--SSLYR 263 (496)
Q Consensus 190 L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~l-p~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~ 263 (496)
|++|++++|.+++..+.. +..+++|++|++++|+++++ |.. +..+++|++|++++|++++..+..+..+ .+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 888888888888755544 78888888888888888885 544 6678888888888888887777776655 57778
Q ss_pred EEccCCCCCCcccccc--------CCCCCccEEEcccCcccccCCcCcCCC---CCCCEEEccCCcccccCCcccCCCCC
Q 035878 264 VRLESNELTGDLEQDF--------GIYPNLTYIDLSYNRLQGEVSPKWGKC---QKLTLLGLAGNSIGGKIPAEIGSLSQ 332 (496)
Q Consensus 264 L~L~~n~l~~~~~~~~--------~~l~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~l~~ 332 (496)
|++++|.+.+..+..+ ..+++|++|++++|.+++..|..+... ++|+.|++++|...+....
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------- 257 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------- 257 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-------
Confidence 8888887776544322 245667777777777776655554332 6677777776655432110
Q ss_pred CCEEEccCCcCccccchhhc--CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEec
Q 035878 333 LVVLDLSSNQLSGEIPAQIG--NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSL 410 (496)
Q Consensus 333 L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L 410 (496)
.+.+.+..+..+. ..++|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++
T Consensus 258 -------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 258 -------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp -------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 0011111111111 1245666666666666555555666666666666666666555555666666666666
Q ss_pred cCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878 411 SQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490 (496)
Q Consensus 411 s~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 490 (496)
++|.+++..|..+..+++|++| ++++|++++..|..+.++++|++|++++|++++..+..|..+++|++|++++|+++|
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVL-DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccCCcChhHhcCcccCCEE-ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 6666655555556666666666 666666665555566666666666666666665444455566666666666666666
Q ss_pred cCC
Q 035878 491 PLP 493 (496)
Q Consensus 491 ~ip 493 (496)
.+|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 655
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-45 Score=386.83 Aligned_cols=390 Identities=21% Similarity=0.190 Sum_probs=322.9
Q ss_pred EEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCC
Q 035878 82 INLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIG 161 (496)
Q Consensus 82 L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 161 (496)
++.++.+++ .+|. .+. ++++ +||+++|.+++..+.. |.++++|++|++++|.+++..+..|+
T Consensus 12 ~~c~~~~l~-~ip~-~l~--~~l~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 12 YQCMELNFY-KIPD-NLP--FSTK-----NLDLSFNPLRHLGSYS---------FFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp EECCSSCCS-SCCS-SSC--SSCC-----EEECCSCCCCEECTTT---------TTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred EEeCCCCcc-ccCC-Ccc--cccc-----EEEccCCccCccChhH---------hhCCCCceEEECCCCcCCccCccccc
Confidence 455555554 3443 332 3444 8999999998655544 78999999999999999998889999
Q ss_pred CCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc--ccccccCCCCCcE
Q 035878 162 NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG--LPPQVCKGGKLIN 239 (496)
Q Consensus 162 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~ 239 (496)
++++|++|++++|.+++..|..|.++++|++|++++|++++..+..++++++|++|++++|.+++ +|..+.++++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 99999999999999998888999999999999999999997666679999999999999999997 7899999999999
Q ss_pred EecCCCcccCCCCcccCCCCCC----cEEEccCCCCCCccccc-------------------------------------
Q 035878 240 FTASFNHFSGPIPTSLKSCSSL----YRVRLESNELTGDLEQD------------------------------------- 278 (496)
Q Consensus 240 L~l~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~~~~------------------------------------- 278 (496)
|++++|++++..+..+..+++| +.+++++|.+.+..+..
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999998877778777777 78888888766543332
Q ss_pred --------------------------------------------cCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEc
Q 035878 279 --------------------------------------------FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314 (496)
Q Consensus 279 --------------------------------------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 314 (496)
+..+++|++|++++|.+. .+|..+..+ +|++|++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l 311 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLEL 311 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEee
Confidence 334566777777777776 456666655 6666666
Q ss_pred cCCcccccCCcc-c-------------------CCCCCCCEEEccCCcCcccc--chhhcCCCCCCEEeccCCcCccccc
Q 035878 315 AGNSIGGKIPAE-I-------------------GSLSQLVVLDLSSNQLSGEI--PAQIGNLTELSTLSLNGNDISGPIP 372 (496)
Q Consensus 315 ~~n~l~~~~~~~-l-------------------~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (496)
++|.+. .+|.. + ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+
T Consensus 312 ~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (570)
T 2z63_A 312 VNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390 (570)
T ss_dssp ESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred ccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence 666655 22221 1 45678888888888887553 6778889999999999999886544
Q ss_pred hhhcCCCCCCEEEccCCcCCCCCh-hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC-ccchhhhcC
Q 035878 373 EEIGALLNLDSLDLSMNRLSGPIP-KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT-GEIPAQLEK 450 (496)
Q Consensus 373 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~-~~~p~~l~~ 450 (496)
.+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..|..+..+++|++| ++++|+++ +.+|..+..
T Consensus 391 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 391 -NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp -EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTT
T ss_pred -cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE-ECcCCcCccccchhhhhc
Confidence 48899999999999999987665 568899999999999999999999999999999999 99999998 578999999
Q ss_pred CCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 451 LTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 451 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
+++|++|++++|++++..|..|..+++|++|++++|++++.+|.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 99999999999999998899999999999999999999987664
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=384.93 Aligned_cols=389 Identities=24% Similarity=0.261 Sum_probs=281.9
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR 155 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~ 155 (496)
..++++|+++++.+++..+. .|..+++|+ +|++++|.+++..|.. |+++++|++|+|++|.++ .
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~-~ 83 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTS-DILSLSKLR-----ILIISHNRIQYLDISV---------FKFNQELEYLDLSHNKLV-K 83 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHH-HHTTCTTCC-----EEECCSSCCCEEEGGG---------GTTCTTCCEEECCSSCCC-E
T ss_pred cccccEEECCCCcccccChh-hcccccccc-----EEecCCCccCCcChHH---------hhcccCCCEEecCCCcee-e
Confidence 36788888888887755444 677777777 6777888887655654 677788888888888887 4
Q ss_pred CCcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccCccCCCCCCC--CEEECCCCCC--cc-ccc
Q 035878 156 IPEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL--TDLHLFINKL--SG-LPP 229 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~-lp~ 229 (496)
+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+ .|.
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence 4544 77888888888888876 467788888888888888888775 345556666 8888888877 33 444
Q ss_pred cccC--------------------------CCCCcEEecCCCc-------ccCCCCcccCCCCCCcEEEccCCCCCCccc
Q 035878 230 QVCK--------------------------GGKLINFTASFNH-------FSGPIPTSLKSCSSLYRVRLESNELTGDLE 276 (496)
Q Consensus 230 ~l~~--------------------------l~~L~~L~l~~n~-------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 276 (496)
.+.. +++|+.+++++|. +.+.+| .+..+++|+.|++++|.+++..+
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHH
Confidence 4433 3444444444443 333222 33444444444444443332111
Q ss_pred cccC---CCCCccEEEcccCcccccCCcCc-----CCCCC--------------------------CCEEEccCCccccc
Q 035878 277 QDFG---IYPNLTYIDLSYNRLQGEVSPKW-----GKCQK--------------------------LTLLGLAGNSIGGK 322 (496)
Q Consensus 277 ~~~~---~l~~L~~L~ls~n~l~~~~~~~~-----~~~~~--------------------------L~~L~L~~n~l~~~ 322 (496)
..+. ..++|++|++++|.++|.+|..+ ..+++ |+.|++++|.+.+.
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc
Confidence 1100 12356666666666665555555 44444 55555555554322
Q ss_pred CCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcc--ccchhhcCCCCCCEEEccCCcCCCCChhh-h
Q 035878 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG--PIPEEIGALLNLDSLDLSMNRLSGPIPKQ-I 399 (496)
Q Consensus 323 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-l 399 (496)
. .+..+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 1 12678999999999999998889999999999999999999996 56778999999999999999999866654 7
Q ss_pred hCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh-hhcCCCC
Q 035878 400 GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS-LSSMLSL 478 (496)
Q Consensus 400 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L 478 (496)
..+++|++|++++|++++.+|..+. ++|++| ++++|+++ .+|..+..+++|++|++++|++++ +|.. |..+++|
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L-~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 470 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL-DLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSL 470 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEE-ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEE-ECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcc
Confidence 8889999999999999988887664 789999 99999999 889888899999999999999994 5654 8999999
Q ss_pred CEEeCcCCCCcccCC
Q 035878 479 VAVNLSYNNLEGPLP 493 (496)
Q Consensus 479 ~~L~ls~N~l~g~ip 493 (496)
++|++++|++++..|
T Consensus 471 ~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 471 QKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred cEEECcCCCCcccCC
Confidence 999999999988653
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-45 Score=403.69 Aligned_cols=407 Identities=21% Similarity=0.180 Sum_probs=308.4
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCC--------CC---------CCCCC
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDD--------KN---------QPMTG 138 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~--------~n---------~~l~~ 138 (496)
-.+++.|+|+++...+.+++.+|.++++|+ +|+|++|.+.+..|..+..+. .| ..+++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~-----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLR-----ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCC-----EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCC-----EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 356788888888777777655788888888 556666666655555421111 00 01444
Q ss_pred CCCCcEEEccCCcCcccCC-cCCCCCCCCCEEEccCCCCcccCCccccCC--CCCceEecccCcCCcccCccCCCCCC--
Q 035878 139 LLGLKNFLLQDNMLSGRIP-EEIGNCKLLTLLALDGNFLSGPIPSSLGNL--SDLAVLAVASNQLSGEIPANIGTLSK-- 213 (496)
Q Consensus 139 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~-- 213 (496)
+++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..|..++.+++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 5555555555555544332 344555555555555555554444444444 45555555555555555555554444
Q ss_pred ----CCEEECCCCCCcc-ccccccC--------------------------------------CCCCcEEecCCCcccCC
Q 035878 214 ----LTDLHLFINKLSG-LPPQVCK--------------------------------------GGKLINFTASFNHFSGP 250 (496)
Q Consensus 214 ----L~~L~L~~n~l~~-lp~~l~~--------------------------------------l~~L~~L~l~~n~l~~~ 250 (496)
|++|++++|.+++ ++..+.. .++|+.|++++|.+.+.
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 8888888887664 3322211 26799999999999988
Q ss_pred CCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCC
Q 035878 251 IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330 (496)
Q Consensus 251 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 330 (496)
.|..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 89999999999999999999999889999999999999999999998889999999999999999999998888889999
Q ss_pred CCCCEEEccCCcCcccc----------------------------------------chhhcCCCCCCEEeccCCcCccc
Q 035878 331 SQLVVLDLSSNQLSGEI----------------------------------------PAQIGNLTELSTLSLNGNDISGP 370 (496)
Q Consensus 331 ~~L~~L~Ls~n~l~~~~----------------------------------------~~~l~~l~~L~~L~Ls~n~l~~~ 370 (496)
++|++|++++|.+++.. +..+..+++|++|++++|++++.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence 99999999999876421 11244789999999999999865
Q ss_pred cch-hhcCCCCCCEEEccCCcCC-----CCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccc
Q 035878 371 IPE-EIGALLNLDSLDLSMNRLS-----GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI 444 (496)
Q Consensus 371 ~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~ 444 (496)
.+. .+..+++|++|++++|.++ +..+..|..+++|++|+|++|++++..|..+..+++|++| +|++|++++..
T Consensus 442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~ 520 (844)
T 3j0a_A 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL-SLNSNRLTVLS 520 (844)
T ss_dssp CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE-EEESCCCSSCC
T ss_pred ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee-ECCCCCCCccC
Confidence 433 3556899999999999997 4445678889999999999999999999999999999999 99999999877
Q ss_pred hhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878 445 PAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 445 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 493 (496)
|..+. ++|++|+|++|++++.+|..| .+|+.+++++|++.+..+
T Consensus 521 ~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 521 HNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred hhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 66665 899999999999999999775 478999999999987654
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-44 Score=376.67 Aligned_cols=391 Identities=23% Similarity=0.247 Sum_probs=284.2
Q ss_pred eeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCC
Q 035878 71 IVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDN 150 (496)
Q Consensus 71 v~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n 150 (496)
..|...+ | .++++++++ .+|. .+. ++|+ +|++++|.+++..|.. |.++++|++|++++|
T Consensus 2 ~~C~~~~-~--c~~~~~~l~-~ip~-~~~--~~L~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n 60 (549)
T 2z81_A 2 LSCDASG-V--CDGRSRSFT-SIPS-GLT--AAMK-----SLDLSFNKITYIGHGD---------LRACANLQVLILKSS 60 (549)
T ss_dssp CEECTTS-E--EECTTSCCS-SCCS-CCC--TTCC-----EEECCSSCCCEECSST---------TSSCTTCCEEECTTS
T ss_pred ccCCCCc-e--EECCCCccc-cccc-cCC--CCcc-----EEECcCCccCccChhh---------hhcCCcccEEECCCC
Confidence 3576544 3 688888887 5665 443 5666 8899999999766665 789999999999999
Q ss_pred cCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCC-Ccccc
Q 035878 151 MLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINK-LSGLP 228 (496)
Q Consensus 151 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~-l~~lp 228 (496)
.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|+ +..+|
T Consensus 61 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 9999999999999999999999999998888889999999999999999986 467789999999999999998 45566
Q ss_pred -ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC--C-cCcC
Q 035878 229 -PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV--S-PKWG 304 (496)
Q Consensus 229 -~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~-~~~~ 304 (496)
..+..+++|++|++++|++++..|..+..+++|++|+++.|.+.......+..+++|++|++++|.+++.. + ....
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 220 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhh
Confidence 57889999999999999999999999999999999999999987544334456899999999999988642 1 1111
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q 035878 305 KCQKLT-------------------------------------------------------------------------- 310 (496)
Q Consensus 305 ~~~~L~-------------------------------------------------------------------------- 310 (496)
.+++|+
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 300 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence 222333
Q ss_pred -------------EEEccCCcccccCCccc-CCCCCCCEEEccCCcCccccch---hhcCCCCCCEEeccCCcCccccc-
Q 035878 311 -------------LLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPA---QIGNLTELSTLSLNGNDISGPIP- 372 (496)
Q Consensus 311 -------------~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~- 372 (496)
+|++++|.++ .+|..+ ..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 379 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH
T ss_pred cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc
Confidence 3333333332 223222 2455666666666666554432 24555666666666666653321
Q ss_pred -hhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878 373 -EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL 451 (496)
Q Consensus 373 -~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l 451 (496)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++| ++++|++++.+ .++
T Consensus 380 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L-~Ls~N~l~~~~----~~l 450 (549)
T 2z81_A 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVL-DVSNNNLDSFS----LFL 450 (549)
T ss_dssp HHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEE-ECCSSCCSCCC----CCC
T ss_pred hhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEE-ECCCCChhhhc----ccC
Confidence 33555666666666666665 45555555566666666666655 333322 1356666 66666666532 478
Q ss_pred CCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 452 TSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
++|++|+|++|+++ .+|. ...+++|++||+++|++++.+|.
T Consensus 451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 89999999999998 6776 46789999999999999987774
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-43 Score=363.33 Aligned_cols=380 Identities=21% Similarity=0.202 Sum_probs=302.9
Q ss_pred CCCCCccccc--eeeCC---------CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCC
Q 035878 61 TTPSPCRWSG--IVCND---------AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFP 129 (496)
Q Consensus 61 ~~~~~C~w~g--v~c~~---------~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~ 129 (496)
++++.|.|.+ |.|+. ..++++|+|+++.+++..+. .|+++++|+ +|++++|.+.+.+|...
T Consensus 3 p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~-----~L~L~~n~~~~~i~~~~-- 74 (455)
T 3v47_A 3 PGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET-SFSRLQDLQ-----FLKVEQQTPGLVIRNNT-- 74 (455)
T ss_dssp ----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT-TTSSCTTCC-----EEECCCCSTTCEECTTT--
T ss_pred CccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh-HhccCcccc-----EEECcCCcccceECccc--
Confidence 3466787777 78853 25799999999999876666 899999999 78899999988887653
Q ss_pred CCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCcc--ccCCCCCceEecccCcCCcccCcc
Q 035878 130 DDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSS--LGNLSDLAVLAVASNQLSGEIPAN 207 (496)
Q Consensus 130 ~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~ 207 (496)
|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|.. +..+++|++|++++|.+++..|..
T Consensus 75 ------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 75 ------FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp ------TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred ------ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 788999999999999999999999999999999999999999866555 899999999999999999887876
Q ss_pred -CCCCCCCCEEECCCCCCcc-ccccccCC--CCCcEEecCCCcccCCCCcc--------cCCCCCCcEEEccCCCCCCcc
Q 035878 208 -IGTLSKLTDLHLFINKLSG-LPPQVCKG--GKLINFTASFNHFSGPIPTS--------LKSCSSLYRVRLESNELTGDL 275 (496)
Q Consensus 208 -l~~l~~L~~L~L~~n~l~~-lp~~l~~l--~~L~~L~l~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~~~ 275 (496)
+.++++|++|++++|++++ .|..+..+ .+++.+++++|.+.+..+.. +..+++|++|++++|++++..
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 8899999999999999998 45555554 78999999999998765443 346689999999999999888
Q ss_pred ccccCC---CCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccC--CCCCCCEEEccCCcCccccchh
Q 035878 276 EQDFGI---YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIG--SLSQLVVLDLSSNQLSGEIPAQ 350 (496)
Q Consensus 276 ~~~~~~---l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~ 350 (496)
|..+.. .++|+.|++++|.+.+... ..+.+.+..+..+. ..++|++|++++|.+++..|..
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred hhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 776644 3899999999998664321 11122222222222 2357888888888888777777
Q ss_pred hcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccc
Q 035878 351 IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ 430 (496)
Q Consensus 351 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 430 (496)
+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 88888888888888888877777788888888888888888777777788888888888888888877777888888888
Q ss_pred ccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc
Q 035878 431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469 (496)
Q Consensus 431 ~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 469 (496)
+| ++++|++++..+..+..+++|++|++++|++++..|
T Consensus 375 ~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 EL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EE-ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88 888888886666667788888888888888887776
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-44 Score=350.56 Aligned_cols=289 Identities=31% Similarity=0.500 Sum_probs=191.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCcc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCCCCCCC
Q 035878 28 LTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCR--WSGIVCNDA---GSVTEINLANTGLAG--TLHDLDFSS 100 (496)
Q Consensus 28 ~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~~~~C~--w~gv~c~~~---~~v~~L~L~~~~l~g--~~~~~~l~~ 100 (496)
++|++||++||+++.|+..+++|..+ +|||. |.||+|+.. ++|++|+|+++++.| .+++ .+..
T Consensus 5 ~~~~~aL~~~k~~~~~~~~l~~W~~~---------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~ 74 (313)
T 1ogq_A 5 PQDKQALLQIKKDLGNPTTLSSWLPT---------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLAN 74 (313)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTTCCTT---------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGG
T ss_pred HHHHHHHHHHHHhcCCcccccCCCCC---------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhC
Confidence 47999999999999875578999752 68998 999999854 799999999999988 7776 6776
Q ss_pred CCCCceeccceEEccC-CcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCccc
Q 035878 101 FPNLLRFDVYELDVSR-NNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGP 179 (496)
Q Consensus 101 l~~L~~L~L~~L~Ls~-n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 179 (496)
+++|+ +|++++ |.+.+.+|.. ++++++|++|++++|.+++.+|..|+++++|++|++++|.+++.
T Consensus 75 l~~L~-----~L~L~~~n~l~~~~p~~---------l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 140 (313)
T 1ogq_A 75 LPYLN-----FLYIGGINNLVGPIPPA---------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp CTTCS-----EEEEEEETTEESCCCGG---------GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred CCCCC-----eeeCCCCCcccccCChh---------HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc
Confidence 66666 455553 6666656554 45556666666666666656666666666666666666666555
Q ss_pred CCccccCCCCCceEecccCcCCcccCccCCCCC-CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCC
Q 035878 180 IPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS-KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSC 258 (496)
Q Consensus 180 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 258 (496)
+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++ +.+|..+..+
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----------------------~~~~~~~~~l 197 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----------------------GKIPPTFANL 197 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----------------------EECCGGGGGC
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-----------------------ccCChHHhCC
Confidence 555555566666666666655555555555554 5555555555554 4444444444
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL 338 (496)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 338 (496)
+ |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 4 55555555555555555555566666666666666554443 555666677777777776666666777777777777
Q ss_pred cCCcCccccchhhcCCCCCCEEeccCCc
Q 035878 339 SSNQLSGEIPAQIGNLTELSTLSLNGND 366 (496)
Q Consensus 339 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (496)
++|+++|.+|.. ..+++|+.+++++|+
T Consensus 276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCcccccCCCC-ccccccChHHhcCCC
Confidence 777777666665 666777777777775
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-43 Score=372.83 Aligned_cols=383 Identities=21% Similarity=0.253 Sum_probs=278.2
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878 80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE 159 (496)
Q Consensus 80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~ 159 (496)
+.++++++++++ +|. .+. ++++ +|++++|.+++..|.. |.++++|++|++++|.+++..|..
T Consensus 34 ~~l~ls~~~L~~-ip~-~~~--~~L~-----~L~Ls~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK-DLP--PRTK-----ALSLSQNSISELRMPD---------ISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp CEEECTTSCCCS-CCT-TSC--TTCC-----EEECCSSCCCCCCGGG---------TTTCTTCCEEECCSCCCCEECTTT
T ss_pred cEEEcCCCCCcc-CCC-CCC--CCcC-----EEECCCCCccccChhh---------hccCCCccEEECCCCCCCcCCHHH
Confidence 667777777763 554 332 4555 6677777776433333 567777777777777777777777
Q ss_pred CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccccccccCCCCC-
Q 035878 160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKL- 237 (496)
Q Consensus 160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L- 237 (496)
|+++++|++|++++|.++ .+|.. .+++|++|++++|++++ .+|..++++++|++|++++|++++. .+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~ 170 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLH 170 (562)
T ss_dssp TTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSC
T ss_pred hCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhce
Confidence 777777777777777776 45554 67777777777777765 3356777777777777777777652 22333444
Q ss_pred -cEEecCCCcc--cCCCCcccCC--------------------------CCCCcEEEccCCC------------------
Q 035878 238 -INFTASFNHF--SGPIPTSLKS--------------------------CSSLYRVRLESNE------------------ 270 (496)
Q Consensus 238 -~~L~l~~n~l--~~~~p~~l~~--------------------------l~~L~~L~L~~n~------------------ 270 (496)
++|++++|.+ ++..|..+.. +++|+.+++++|+
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 7777777766 5555554443 3344445554442
Q ss_pred ----------CCCc----cccccCCCCCccEEEcccCcccccCCcCc-----CCC-------------------------
Q 035878 271 ----------LTGD----LEQDFGIYPNLTYIDLSYNRLQGEVSPKW-----GKC------------------------- 306 (496)
Q Consensus 271 ----------l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-----~~~------------------------- 306 (496)
+.+. ++..+ ..++|++|++++|.++|.+|..+ ..+
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred ceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 1100 00011 12377788888888877777655 222
Q ss_pred -CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcc--ccchhhcCCCCCCE
Q 035878 307 -QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG--PIPEEIGALLNLDS 383 (496)
Q Consensus 307 -~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~ 383 (496)
.+|++|++++|.+.... ....+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++
T Consensus 330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 34677777777665321 12678999999999999999899999999999999999999996 34567899999999
Q ss_pred EEccCCcCCCCChh-hhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccC
Q 035878 384 LDLSMNRLSGPIPK-QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHN 462 (496)
Q Consensus 384 L~Ls~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 462 (496)
|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++| ++++|+++ .+|..+.++++|++|++++|
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L-~L~~N~l~-~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL-DLHNNRIM-SIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE-ECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE-ECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence 99999999985554 578899999999999999988877654 689999 99999999 78888889999999999999
Q ss_pred cCCcccchh-hhcCCCCCEEeCcCCCCcccCC
Q 035878 463 NLSGEIPAS-LSSMLSLVAVNLSYNNLEGPLP 493 (496)
Q Consensus 463 ~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip 493 (496)
+++ .+|.. |..+++|++|++++|+++|..|
T Consensus 484 ~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 484 QLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999 56655 9999999999999999998754
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.3e-43 Score=365.26 Aligned_cols=384 Identities=20% Similarity=0.238 Sum_probs=311.9
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878 80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE 159 (496)
Q Consensus 80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~ 159 (496)
+.+++++++++ .+|. .+. ++|+ +|++++|.+++..|.. |.++++|++|++++|.+++..|..
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~-----~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~ 64 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTT-----ILNISQNYISELWTSD---------ILSLSKLRILIISHNRIQYLDISV 64 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCS-----EEECCSSCCCCCCHHH---------HTTCTTCCEEECCSSCCCEEEGGG
T ss_pred ceEecCCCCcc-cccc-ccc--cccc-----EEECCCCcccccChhh---------ccccccccEEecCCCccCCcChHH
Confidence 46899999998 5776 554 6777 8899999998655544 788999999999999999988999
Q ss_pred CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccccccccCCCCC-
Q 035878 160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKL- 237 (496)
Q Consensus 160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L- 237 (496)
|+++++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|++++ ..+..+++|
T Consensus 65 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~ 139 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLN 139 (520)
T ss_dssp GTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSC
T ss_pred hhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccce
Confidence 999999999999999998 56766 89999999999999987 578999999999999999999987 345566777
Q ss_pred -cEEecCCCcc--cCCCCcccCCC--------------------------CCCcEEEccCCC-------CCCccccccCC
Q 035878 238 -INFTASFNHF--SGPIPTSLKSC--------------------------SSLYRVRLESNE-------LTGDLEQDFGI 281 (496)
Q Consensus 238 -~~L~l~~n~l--~~~~p~~l~~l--------------------------~~L~~L~L~~n~-------l~~~~~~~~~~ 281 (496)
++|++++|.+ .+..|..+..+ ++|+.+++++|. +.+.++ .++.
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~ 218 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT 218 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG
T ss_pred eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc
Confidence 9999999999 77777766653 444444444443 333333 4455
Q ss_pred CCCccEEEcccCcccccCCcCc---CCCCCCCEEEccCCcccccCCccc-----CCCCCCCEEEccCCcCccccc-hh--
Q 035878 282 YPNLTYIDLSYNRLQGEVSPKW---GKCQKLTLLGLAGNSIGGKIPAEI-----GSLSQLVVLDLSSNQLSGEIP-AQ-- 350 (496)
Q Consensus 282 l~~L~~L~ls~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~-- 350 (496)
+++|+.|++++|.+++..+..+ ...++|++|++++|+++|.+|..+ +.+++|+.+++++|.+ .+| ..
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~ 296 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY 296 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh
Confidence 5666666666665554221111 113589999999999998899888 7777777777777766 233 11
Q ss_pred -----------------------hcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCC--CChhhhhCCCCC
Q 035878 351 -----------------------IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG--PIPKQIGELRDL 405 (496)
Q Consensus 351 -----------------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~~~~L 405 (496)
+..+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..+..+++|
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred cccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence 1678999999999999999899999999999999999999996 566789999999
Q ss_pred CEEeccCccCCccCChh-ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCc
Q 035878 406 RSLSLSQNNLNGTIPFQ-IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS 484 (496)
Q Consensus 406 ~~L~Ls~n~l~~~~p~~-~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 484 (496)
++|++++|++++.+|.. +..+++|++| ++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCcCCcccccchhccCccCCEE-ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 99999999999867764 7888999999 9999999988887664 79999999999999 788888899999999999
Q ss_pred CCCCcccCCC
Q 035878 485 YNNLEGPLPD 494 (496)
Q Consensus 485 ~N~l~g~ip~ 494 (496)
+|+++ .||.
T Consensus 453 ~N~l~-~l~~ 461 (520)
T 2z7x_B 453 SNQLK-SVPD 461 (520)
T ss_dssp SSCCC-CCCT
T ss_pred CCcCC-ccCH
Confidence 99998 5775
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-42 Score=366.74 Aligned_cols=396 Identities=23% Similarity=0.243 Sum_probs=289.7
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878 77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI 156 (496)
Q Consensus 77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~ 156 (496)
..+++|||++|.|++..+. +|.++++|+ +|||++|.|++ ||+.. |.++++|++|+|++|++++..
T Consensus 52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~-----~L~Ls~N~i~~-i~~~~--------f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQ-----VLDLSRCEIQT-IEDGA--------YQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCC-----EEECTTCCCCE-ECTTT--------TTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCEEEeeCCCCCCCCHH-HHhCCCCCC-----EEECCCCcCCC-cChhH--------hcCCCCCCEEEccCCcCCCCC
Confidence 4689999999999854444 899999998 78889999984 55432 788999999999999999877
Q ss_pred CcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccc-cccccCC
Q 035878 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGL-PPQVCKG 234 (496)
Q Consensus 157 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l 234 (496)
+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|+++++ |..+..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 7889999999999999999997777778999999999999999875 4677888899999999999999884 4444333
Q ss_pred CC----CcEEecCCCcccCCCCcccCCCCCCcEEEccCC-----------------------------------------
Q 035878 235 GK----LINFTASFNHFSGPIPTSLKSCSSLYRVRLESN----------------------------------------- 269 (496)
Q Consensus 235 ~~----L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n----------------------------------------- 269 (496)
.+ ...++++.|.++...+..+. ...++.+++.+|
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 22 34567777665432221111 111111111111
Q ss_pred -----------------------------------------CCCCccccccCCCCCccEEEcccCcccccCC--------
Q 035878 270 -----------------------------------------ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS-------- 300 (496)
Q Consensus 270 -----------------------------------------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-------- 300 (496)
.+... ..+.....++.|++.+|.+.+..+
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~ 353 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 353 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhh
Confidence 10000 011122344444444444332211
Q ss_pred -----------cCcCCCCCCCEEEccCCcccc-------------------------cCCcccCCCCCCCEEEccCCcCc
Q 035878 301 -----------PKWGKCQKLTLLGLAGNSIGG-------------------------KIPAEIGSLSQLVVLDLSSNQLS 344 (496)
Q Consensus 301 -----------~~~~~~~~L~~L~L~~n~l~~-------------------------~~~~~l~~l~~L~~L~Ls~n~l~ 344 (496)
.....+++|+.++++.|.+.. ..+..+..+++|+.++++.+...
T Consensus 354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 112234566666666665532 12334556677777777777655
Q ss_pred cccc-hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC-CCChhhhhCCCCCCEEeccCccCCccCChh
Q 035878 345 GEIP-AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS-GPIPKQIGELRDLRSLSLSQNNLNGTIPFQ 422 (496)
Q Consensus 345 ~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 422 (496)
...+ ..+..+++++.+++++|.+.+..+..+..++.+++|++++|.+. +..|..|..+++|++|+|++|++++..|..
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 4433 45778889999999999998888888888999999999999754 456778889999999999999999888999
Q ss_pred ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcC-CCCCEEeCcCCCCccc
Q 035878 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSM-LSLVAVNLSYNNLEGP 491 (496)
Q Consensus 423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ 491 (496)
|.++++|++| +|++|++++..|..|.++++|++|+|++|++++..|..|..+ ++|++|++++|+++..
T Consensus 514 f~~l~~L~~L-~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 514 FNSLSSLQVL-NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTTCTTCCEE-ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HcCCCCCCEE-ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999 999999998888889999999999999999999999999888 6899999999998753
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-40 Score=342.01 Aligned_cols=344 Identities=28% Similarity=0.400 Sum_probs=246.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878 77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI 156 (496)
Q Consensus 77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~ 156 (496)
.++++|+++++++.. ++ .+..+++|+ +||+++|.+++. |. +.++++|++|++++|.+++..
T Consensus 46 ~~l~~L~l~~~~i~~-l~--~~~~l~~L~-----~L~Ls~n~l~~~-~~----------~~~l~~L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID--GVEYLNNLT-----QINFSNNQLTDI-TP----------LKNLTKLVDILMNNNQIADIT 106 (466)
T ss_dssp HTCCEEECCSSCCCC-CT--TGGGCTTCC-----EEECCSSCCCCC-GG----------GTTCTTCCEEECCSSCCCCCG
T ss_pred ccccEEecCCCCCcc-Cc--chhhhcCCC-----EEECCCCccCCc-hh----------hhccccCCEEECCCCccccCh
Confidence 467888888887763 33 466677776 677778877743 22 466778888888888887554
Q ss_pred CcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCC
Q 035878 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGK 236 (496)
Q Consensus 157 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 236 (496)
+ ++++++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|++|+++ +.+.+++. +..+++
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~ 178 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTT 178 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTT
T ss_pred h--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCchh-hccCCC
Confidence 4 7788888888888888775432 7778888888888887774 33 37778888888875 45555443 667778
Q ss_pred CcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccC
Q 035878 237 LINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG 316 (496)
Q Consensus 237 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 316 (496)
|++|++++|.+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 252 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence 88888888877653 346777788888888887776554 56677788888888777653 3566777788888888
Q ss_pred CcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCCh
Q 035878 317 NSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIP 396 (496)
Q Consensus 317 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 396 (496)
|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..|
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 77775544 6777778888888887775433 6677778888888877775433 6677778888888887776554
Q ss_pred hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 397 KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 397 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
+..+++|++|++++|++++. ..+..+++|+++ ++++|++++..| +..+++|++|++++|++++
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL-SAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE-ECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCEE-eCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66777788888887777754 356777777777 788887776665 6777777788888777775
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=352.53 Aligned_cols=358 Identities=21% Similarity=0.218 Sum_probs=294.9
Q ss_pred eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL 190 (496)
Q Consensus 111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 190 (496)
++|+++|.++ .+|..+ .++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|
T Consensus 35 ~l~ls~~~L~-~ip~~~-----------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 35 MVDYSNRNLT-HVPKDL-----------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp EEECTTSCCC-SCCTTS-----------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred EEEcCCCCCc-cCCCCC-----------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 7999999999 588763 2789999999999998888899999999999999999998889999999999
Q ss_pred ceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc--cccccCCCCCcEEecCCCcccCCCCcccCCCCCC--cEEEc
Q 035878 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL--PPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL--YRVRL 266 (496)
Q Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~L 266 (496)
++|++++|+++ .+|.. .+++|++|++++|+++++ |..+..+++|++|++++|++++. .+..+++| ++|++
T Consensus 103 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL 176 (562)
T ss_dssp CEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred CEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence 99999999998 57766 899999999999999985 47899999999999999999864 34445555 99999
Q ss_pred cCCCC--CCccccccCC--------------------------CCCccEEEcccCc------------------------
Q 035878 267 ESNEL--TGDLEQDFGI--------------------------YPNLTYIDLSYNR------------------------ 294 (496)
Q Consensus 267 ~~n~l--~~~~~~~~~~--------------------------l~~L~~L~ls~n~------------------------ 294 (496)
++|.+ ++..|..+.. +++|+.+++++|.
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99999 6666655543 3456666666653
Q ss_pred ----cccc----CCcCcCCCCCCCEEEccCCcccccCCccc-----CCCC--------------------------CCCE
Q 035878 295 ----LQGE----VSPKWGKCQKLTLLGLAGNSIGGKIPAEI-----GSLS--------------------------QLVV 335 (496)
Q Consensus 295 ----l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~--------------------------~L~~ 335 (496)
+.+. ++.. ...++|++|++++|.++|.+|..+ ..++ +|++
T Consensus 257 ~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 257 QHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred cCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 1100 0001 122489999999999998888776 3333 3566
Q ss_pred EEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCC--ChhhhhCCCCCCEEeccCc
Q 035878 336 LDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP--IPKQIGELRDLRSLSLSQN 413 (496)
Q Consensus 336 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~Ls~n 413 (496)
|++++|.+.... ....+++|++|++++|++++.+|..+..+++|++|++++|++++. +|..+.++++|++|++++|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 666666654221 126789999999999999998999999999999999999999963 4567899999999999999
Q ss_pred cCCccCCh-hccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccC
Q 035878 414 NLNGTIPF-QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 492 (496)
Q Consensus 414 ~l~~~~p~-~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 492 (496)
++++.+|. .+..+++|+++ ++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .|
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l 488 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVL-NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SV 488 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEE-ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CC
T ss_pred cCCCccChhhhcCcccCCEE-ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CC
Confidence 99986665 47889999999 9999999988877654 79999999999999 78887779999999999999999 57
Q ss_pred CC
Q 035878 493 PD 494 (496)
Q Consensus 493 p~ 494 (496)
|.
T Consensus 489 ~~ 490 (562)
T 3a79_B 489 PD 490 (562)
T ss_dssp CT
T ss_pred CH
Confidence 75
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.5e-41 Score=343.84 Aligned_cols=364 Identities=24% Similarity=0.266 Sum_probs=221.9
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCC--------------------CCCC
Q 035878 77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDK--------------------NQPM 136 (496)
Q Consensus 77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~--------------------n~~l 136 (496)
.++++++++++.+ |.+|+ +++++++|+ +|++++|.+.|.+|..++.+.. +..+
T Consensus 11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~-----~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV-EAENVKSKT-----EYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -------------------------CCHH-----HHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccchhhhcccCch-hhCCh-hHhcccchh-----hhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 5688899999999 78888 899999998 5566777787778777543210 0001
Q ss_pred C----CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCC
Q 035878 137 T----GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212 (496)
Q Consensus 137 ~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (496)
. -.++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|++++ +| .+++++
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred ccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 1 12456666666666665 4432 2567777777776663 2221 1577777777777775 55 477777
Q ss_pred CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878 213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY 292 (496)
Q Consensus 213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 292 (496)
+|++|++++|+++++|... .+|++|++++|++++ +| .+.++++|++|++++|++++ +|.. .++|++|++++
T Consensus 154 ~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp TCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred CCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 7777777777777776543 477777777777776 45 47777777777777777775 3322 25777778877
Q ss_pred CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc
Q 035878 293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372 (496)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (496)
|.++ .+| .+..+++|++|++++|++++ +|.. .++|++|++++|++++ +|.. .++|++|++++|++++ +|
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~ 293 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LS 293 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ES
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-cc
Confidence 7777 455 37777788888888877774 3432 3677888888887774 4432 3678888888888775 22
Q ss_pred hhhcCCCCCCEEEccCCcCCCCChhhhhCC-CCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878 373 EEIGALLNLDSLDLSMNRLSGPIPKQIGEL-RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL 451 (496)
Q Consensus 373 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l 451 (496)
.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|+++ ++++|+++ .+|. .+
T Consensus 294 ~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L-~L~~N~l~-~lp~---~l 356 (454)
T 1jl5_A 294 EL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL-IASFNHLA-EVPE---LP 356 (454)
T ss_dssp CC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE-ECCSSCCS-CCCC---CC
T ss_pred Cc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEE-ECCCCccc-cccc---hh
Confidence 11 2578888888888774 22 23 589999999999985 6654 5788888 99999999 5776 47
Q ss_pred CCCCEEEcccCcCCc--ccchhhhcC-------------CCCCEEeCcCCCCcc--cCCC
Q 035878 452 TSLQSMNLSHNNLSG--EIPASLSSM-------------LSLVAVNLSYNNLEG--PLPD 494 (496)
Q Consensus 452 ~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~ls~N~l~g--~ip~ 494 (496)
++|++|++++|++++ .+|..+..+ ++|++||+++|+++| .||.
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 899999999999998 788888887 889999999999998 8885
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-40 Score=340.15 Aligned_cols=343 Identities=20% Similarity=0.260 Sum_probs=210.4
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878 77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI 156 (496)
Q Consensus 77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~ 156 (496)
.++++|+++++.+++. + .+..+++|+ +|++++|.+++ +| ++++++|++|++++|.+++.
T Consensus 42 ~~L~~L~Ls~n~l~~~-~--~l~~l~~L~-----~L~Ls~n~l~~-~~-----------~~~l~~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T--GIEKLTGLT-----KLICTSNNITT-LD-----------LSQNTNLTYLACDSNKLTNL- 100 (457)
T ss_dssp TTCCEEECCSSCCCCC-T--TGGGCTTCS-----EEECCSSCCSC-CC-----------CTTCTTCSEEECCSSCCSCC-
T ss_pred CCCCEEEccCCCcccC-h--hhcccCCCC-----EEEccCCcCCe-Ec-----------cccCCCCCEEECcCCCCcee-
Confidence 4677777777777753 2 566777776 56677777764 32 46677777777777777754
Q ss_pred CcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc-ccccccCCC
Q 035878 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGG 235 (496)
Q Consensus 157 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~ 235 (496)
+ ++++++|++|++++|.+++ +| ++.+++|++|++++|++++. + ++.+++|++|++++|+..+ + .+..++
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCC
Confidence 2 6777777777777777775 33 67777777777777777753 2 6677777777777774333 4 355677
Q ss_pred CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEcc
Q 035878 236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLA 315 (496)
Q Consensus 236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 315 (496)
+|++|++++|++++ +| +..+++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|+.|+++
T Consensus 171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 77777777777776 33 66777777777777777764 36667777777777777776 34 6677777777777
Q ss_pred CCcccccCCcccCCCC-------CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878 316 GNSIGGKIPAEIGSLS-------QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM 388 (496)
Q Consensus 316 ~n~l~~~~~~~l~~l~-------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 388 (496)
+|++++..+..+..++ +|++|++++|.+.+.+| ++.+++|++|++++|...+.+|.. ..+|+.|+
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~--- 313 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELD--- 313 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCC---
T ss_pred CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcceEec---
Confidence 7777765433332222 23333344444333333 234455555555555544443321 11111111
Q ss_pred CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878 389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI 468 (496)
Q Consensus 389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 468 (496)
+.++++|++|++++|++++. + ++.+++|+.| ++++|++++ ++.|+.|++++|+++|.
T Consensus 314 ----------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L-~l~~N~l~~--------l~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 314 ----------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSL-SCVNAHIQD--------FSSVGKIPALNNNFEAE- 370 (457)
T ss_dssp ----------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEE-ECCSSCCCB--------CTTGGGSSGGGTSEEEE-
T ss_pred ----------hhhcccCCEEECCCCccccc-c--cccCCcCcEE-ECCCCCCCC--------ccccccccccCCcEEec-
Confidence 22335566666666666652 2 5566666666 666666664 13445555666666554
Q ss_pred chhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 469 PASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 469 p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
..+..|..+++++|+++|.||+
T Consensus 371 ----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 371 ----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ----EEEEECCCBCCBTTBEEEECCT
T ss_pred ----ceeeecCccccccCcEEEEcCh
Confidence 2344566667777777777764
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.3e-39 Score=330.63 Aligned_cols=345 Identities=26% Similarity=0.388 Sum_probs=295.8
Q ss_pred CCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccC
Q 035878 101 FPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPI 180 (496)
Q Consensus 101 l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 180 (496)
+++++ .|+++++.+. .+|. +..+++|++|++++|.+++..+ ++++++|++|++++|.+++..
T Consensus 45 l~~l~-----~L~l~~~~i~-~l~~----------~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 45 LDQVT-----TLQADRLGIK-SIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106 (466)
T ss_dssp HHTCC-----EEECCSSCCC-CCTT----------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred hcccc-----EEecCCCCCc-cCcc----------hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh
Confidence 45555 6778888886 4553 6778999999999999986654 899999999999999998655
Q ss_pred CccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCC
Q 035878 181 PSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSS 260 (496)
Q Consensus 181 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 260 (496)
+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+.+++. +..+++|++|+++ +.+.+.. .+.++++
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~~~~~~~--~~~~l~~ 178 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLK--PLANLTT 178 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-ESCCCCG--GGTTCTT
T ss_pred h--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-CcccCch--hhccCCC
Confidence 4 8999999999999999986533 8899999999999999998874 7889999999996 4555433 3889999
Q ss_pred CcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccC
Q 035878 261 LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS 340 (496)
Q Consensus 261 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 340 (496)
|++|++++|.+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 252 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence 99999999998865 347889999999999999987655 77889999999999999864 4678899999999999
Q ss_pred CcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCC
Q 035878 341 NQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP 420 (496)
Q Consensus 341 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 420 (496)
|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..|
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 99986654 8899999999999999986544 7889999999999999997544 7889999999999999997766
Q ss_pred hhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878 421 FQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490 (496)
Q Consensus 421 ~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 490 (496)
+..+++|++| ++++|++++. ..+.++++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 327 --~~~l~~L~~L-~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 --VSSLTKLQRL-FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGCTTCCEE-ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred --hccCccCCEe-ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7789999999 9999999965 468899999999999999998877 8899999999999999987
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=332.74 Aligned_cols=322 Identities=20% Similarity=0.191 Sum_probs=277.8
Q ss_pred CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCC
Q 035878 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI 221 (496)
Q Consensus 142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (496)
-+.++.+++.++ .+|..+. +++++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 468889998888 5666554 6899999999999988888999999999999999999988899999999999999999
Q ss_pred CCCcccccc-ccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCC
Q 035878 222 NKLSGLPPQ-VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS 300 (496)
Q Consensus 222 n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 300 (496)
|+++.+|.. +..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 999998765 5678999999999999988888888999999999999999988888888888999999999998887766
Q ss_pred cCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCC
Q 035878 301 PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN 380 (496)
Q Consensus 301 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 380 (496)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|++++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 67888889999999999988887778888899999999988887777777666778999999999888555567888888
Q ss_pred CCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcc
Q 035878 381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLS 460 (496)
Q Consensus 381 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 460 (496)
|++|++++|++++..+..|..+++|++|++++|++++..|..+..+++|++| ++++|++++..+..|..+++|++|+++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL-NVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE-ECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE-ECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 9999999998887777778888889999999988888888888888888888 899998887777778888888899999
Q ss_pred cCcCCcc
Q 035878 461 HNNLSGE 467 (496)
Q Consensus 461 ~N~l~~~ 467 (496)
+|+++..
T Consensus 329 ~N~l~c~ 335 (477)
T 2id5_A 329 SNPLACD 335 (477)
T ss_dssp SSCEECS
T ss_pred CCCccCc
Confidence 8888754
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-38 Score=339.93 Aligned_cols=372 Identities=22% Similarity=0.285 Sum_probs=283.0
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878 77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI 156 (496)
Q Consensus 77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~ 156 (496)
.+++.|+|++|.|++..+. +|.++++|+ +|+|++|++++ +|... |.++++|++|+|++|.+++..
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~-----~L~Ls~N~l~~-l~~~~--------f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDG-AYQSLSHLS-----TLILTGNPIQS-LALGA--------FSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TTCCEEECTTCCCCEECTT-TTTTCTTCC-----EEECTTCCCCE-ECGGG--------GTTCTTCCEEECTTSCCCCST
T ss_pred CCCCEEECCCCcCCCcChh-HhcCCCCCC-----EEEccCCcCCC-CCHHH--------hcCCCCCCEEECCCCcCCCCC
Confidence 4799999999999854444 899999999 78899999984 55432 789999999999999999888
Q ss_pred CcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccCccCCCCCC----CCEEECCCCCCccccccc
Q 035878 157 PEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSK----LTDLHLFINKLSGLPPQV 231 (496)
Q Consensus 157 ~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~----L~~L~L~~n~l~~lp~~l 231 (496)
+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+ ...++++.|.+..++...
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 8889999999999999999975 46888999999999999999999877776654433 235666666655443332
Q ss_pred cCCCCCcEEecCCC------------------------------------------------------------------
Q 035878 232 CKGGKLINFTASFN------------------------------------------------------------------ 245 (496)
Q Consensus 232 ~~l~~L~~L~l~~n------------------------------------------------------------------ 245 (496)
.....++.+++..|
T Consensus 221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 300 (635)
T 4g8a_A 221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID 300 (635)
T ss_dssp TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence 22222222222111
Q ss_pred ----------------cccCCCCcccCCCCCCcEEEccCCCCCCcccc-------------------ccCCCCCccEEEc
Q 035878 246 ----------------HFSGPIPTSLKSCSSLYRVRLESNELTGDLEQ-------------------DFGIYPNLTYIDL 290 (496)
Q Consensus 246 ----------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-------------------~~~~l~~L~~L~l 290 (496)
.+... ..+.....++.|++.+|.+.+..+. ....+++|+.+++
T Consensus 301 ~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 301 LFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 378 (635)
T ss_dssp TTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEEC
T ss_pred hhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchh
Confidence 11000 0112223444444444433221111 1123455555555
Q ss_pred ccCcccc-------------------------cCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCc
Q 035878 291 SYNRLQG-------------------------EVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQLS 344 (496)
Q Consensus 291 s~n~l~~-------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~ 344 (496)
++|.+.. ..+..+..+++|+.+++..++.....+ ..+..+++++.++++.|.+.
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~ 458 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE
T ss_pred hccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence 5554421 123456678889999998887765543 46788999999999999999
Q ss_pred cccchhhcCCCCCCEEeccCCcC-ccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhc
Q 035878 345 GEIPAQIGNLTELSTLSLNGNDI-SGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI 423 (496)
Q Consensus 345 ~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 423 (496)
+..+..+..++++++|++++|.+ .+..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+
T Consensus 459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence 88899999999999999999975 44578889999999999999999999889999999999999999999999889999
Q ss_pred cCCccccccccccCCcCCccchhhhcCC-CCCCEEEcccCcCCc
Q 035878 424 GNLVGLQDLLDLSYNSLTGEIPAQLEKL-TSLQSMNLSHNNLSG 466 (496)
Q Consensus 424 ~~l~~L~~LL~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ 466 (496)
..+++|++| +|++|++++..|..+.++ ++|++|+|++|+++.
T Consensus 539 ~~l~~L~~L-~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 539 KCLNSLQVL-DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCTTCCEE-ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred hCCCCCCEE-ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999 999999999999999988 689999999999864
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=330.54 Aligned_cols=320 Identities=19% Similarity=0.160 Sum_probs=240.7
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878 80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE 159 (496)
Q Consensus 80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~ 159 (496)
+.++.++.+++ .+|. .+. ++++ +||+++|.+++..|.. |.++++|++|+|++|.+++..|..
T Consensus 14 ~~v~c~~~~l~-~ip~-~~~--~~l~-----~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~i~~~~~~~ 75 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPE-GIP--TETR-----LLDLGKNRIKTLNQDE---------FASFPHLEELELNENIVSAVEPGA 75 (477)
T ss_dssp TEEECCSCCCS-SCCS-CCC--TTCS-----EEECCSSCCCEECTTT---------TTTCTTCCEEECTTSCCCEECTTT
T ss_pred CEEEeCCCCcC-cCCC-CCC--CCCc-----EEECCCCccceECHhH---------ccCCCCCCEEECCCCccCEeChhh
Confidence 35777877776 4444 332 3444 7788888887655544 677888888888888888777888
Q ss_pred CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc-ccccccCCCCCc
Q 035878 160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLI 238 (496)
Q Consensus 160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~ 238 (496)
|+++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++ .+..+..+++|+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 8888888888888888876555667788888888888888887777778888888888888888877 445667777888
Q ss_pred EEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc
Q 035878 239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS 318 (496)
Q Consensus 239 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 318 (496)
+|++++|++++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|...+.++.......+|++|++++|+
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 88888888776666667777888888888888777666677777888888888777766666666666678888888887
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878 319 IGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ 398 (496)
Q Consensus 319 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 398 (496)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 77554456777778888888888777666666777778888888888777777777777778888888888777666666
Q ss_pred hhCCCCCCEEeccCccCCc
Q 035878 399 IGELRDLRSLSLSQNNLNG 417 (496)
Q Consensus 399 l~~~~~L~~L~Ls~n~l~~ 417 (496)
|..+++|++|++++|++..
T Consensus 316 ~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp BSCGGGCCEEECCSSCEEC
T ss_pred cCCCcccCEEEccCCCccC
Confidence 7777778888888777763
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-38 Score=321.92 Aligned_cols=317 Identities=22% Similarity=0.238 Sum_probs=241.8
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR 155 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~ 155 (496)
..++++|+++++.+++. .++.+++|+ +|++++|.+++ +| ++++++|++|++++|.+++.
T Consensus 63 l~~L~~L~Ls~n~l~~~----~~~~l~~L~-----~L~Ls~N~l~~-~~-----------~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL----DLSQNTNLT-----YLACDSNKLTN-LD-----------VTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp CTTCSEEECCSSCCSCC----CCTTCTTCS-----EEECCSSCCSC-CC-----------CTTCTTCCEEECCSSCCSCC
T ss_pred cCCCCEEEccCCcCCeE----ccccCCCCC-----EEECcCCCCce-ee-----------cCCCCcCCEEECCCCcCCee
Confidence 46799999999999873 378888888 78899999985 33 67899999999999999974
Q ss_pred CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCC
Q 035878 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGG 235 (496)
Q Consensus 156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~ 235 (496)
| ++++++|++|++++|.+++. + ++.+++|++|++++|+..+.+ .+..+++|++|++++|+++++| +..++
T Consensus 122 -~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~ 191 (457)
T 3bz5_A 122 -D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNK 191 (457)
T ss_dssp -C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCT
T ss_pred -c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCC
Confidence 4 89999999999999999974 3 889999999999999766566 4788999999999999999987 78899
Q ss_pred CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCC-------C
Q 035878 236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ-------K 308 (496)
Q Consensus 236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-------~ 308 (496)
+|+.|++++|++++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+++..+..+..+. +
T Consensus 192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD 265 (457)
T ss_dssp TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC
Confidence 999999999999975 38899999999999999998 45 88899999999999999987655444443 4
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchh--------hcCCCCCCEEeccCCcCccccchhhcCCCC
Q 035878 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQ--------IGNLTELSTLSLNGNDISGPIPEEIGALLN 380 (496)
Q Consensus 309 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 380 (496)
|+.|++++|.+.+.+| ++.+++|++|++++|...+.+|.. +..+++|++|++++|++++. + ++.+++
T Consensus 266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~ 340 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTK 340 (457)
T ss_dssp CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCc
Confidence 5666666676666665 568899999999999988777642 33445555555555555542 2 455555
Q ss_pred CCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhh
Q 035878 381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL 448 (496)
Q Consensus 381 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l 448 (496)
|++|++++|++++ ++.|..|++++|.+.|. +.+..+..+ ++++|+++|.+|..+
T Consensus 341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l-~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKE-TLTNNSLTIAVSPDL 394 (457)
T ss_dssp CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCB-CCBTTBEEEECCTTC
T ss_pred CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcc-ccccCcEEEEcChhH
Confidence 5555555555553 12344445555555543 233445555 666666666665443
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-38 Score=324.60 Aligned_cols=338 Identities=24% Similarity=0.317 Sum_probs=197.8
Q ss_pred CCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCC-------------
Q 035878 100 SFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLL------------- 166 (496)
Q Consensus 100 ~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L------------- 166 (496)
..++|+ +|++++|.+ |.+|.+ ++++++|++|++++|.+.|.+|..++++++|
T Consensus 9 ~~~~L~-----~L~l~~n~l-~~iP~~---------i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l 73 (454)
T 1jl5_A 9 SNTFLQ-----EPLRHSSNL-TEMPVE---------AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA 73 (454)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTC
T ss_pred ccccch-----hhhcccCch-hhCChh---------HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCC
Confidence 345666 788999999 899988 6777888888888888888888888777654
Q ss_pred CEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCc
Q 035878 167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNH 246 (496)
Q Consensus 167 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~ 246 (496)
++|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|+++++|... ++|++|++++|+
T Consensus 74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~ 142 (454)
T 1jl5_A 74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ 142 (454)
T ss_dssp SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC
T ss_pred CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCC
Confidence 777777777774 3431 2577777777777775 5543 356667777777666655321 566666776666
Q ss_pred ccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcc
Q 035878 247 FSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE 326 (496)
Q Consensus 247 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 326 (496)
+++ +| .+.++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..
T Consensus 143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 665 45 46666666666666666664 33322 466666666666665 33 46666666666666666654 2322
Q ss_pred cCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCC
Q 035878 327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR 406 (496)
Q Consensus 327 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 406 (496)
.++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|+
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~ 280 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLT 280 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred ---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCC
Confidence 135666666666665 4442 5566666666666666653 3321 2455555555555553 3321 23444
Q ss_pred EEeccCccCCc--cCChh-------------ccCC-ccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccch
Q 035878 407 SLSLSQNNLNG--TIPFQ-------------IGNL-VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA 470 (496)
Q Consensus 407 ~L~Ls~n~l~~--~~p~~-------------~~~l-~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 470 (496)
+|++++|++++ .+|.. +..+ ++|++| ++++|++++ +|.. +++|++|++++|+++ .+|.
T Consensus 281 ~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L-~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~ 354 (454)
T 1jl5_A 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL-NVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE 354 (454)
T ss_dssp EEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEE-ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred EEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEE-ECCCCcccc-cccc---CCcCCEEECCCCccc-cccc
Confidence 44444444443 22211 1122 478888 999999985 6654 588999999999999 4666
Q ss_pred hhhcCCCCCEEeCcCCCCcc--cCCC
Q 035878 471 SLSSMLSLVAVNLSYNNLEG--PLPD 494 (496)
Q Consensus 471 ~l~~l~~L~~L~ls~N~l~g--~ip~ 494 (496)
.+++|++|++++|+++| .+|.
T Consensus 355 ---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred ---hhhhccEEECCCCCCCcCCCChH
Confidence 47899999999999999 7885
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-37 Score=313.79 Aligned_cols=308 Identities=23% Similarity=0.237 Sum_probs=180.1
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF 220 (496)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (496)
++++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 44444555544443333334445555555555555554444445555555555555555554444445555555555555
Q ss_pred CCCCccccccc-cCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878 221 INKLSGLPPQV-CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV 299 (496)
Q Consensus 221 ~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 299 (496)
+|+++.+|..+ ..+++|++|++++|++++..|..+..+++|++|++++|++++. .+..+++|++|++++|.+++.
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~- 201 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL- 201 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-
Confidence 55555544442 3455555555555555555455555566666666666665543 233445666666666665532
Q ss_pred CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL 379 (496)
Q Consensus 300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 379 (496)
...++|++|++++|.++.. |. ...++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..++
T Consensus 202 ----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 202 ----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp ----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 2234566666666666543 22 1235677777777776643 4566667777777777777766666677777
Q ss_pred CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878 380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL 459 (496)
Q Consensus 380 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L 459 (496)
+|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++| ++++|++++. + +..+++|++|++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L-~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL-YLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-ECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE-ECCCCcccee-C--chhhccCCEEEc
Confidence 77777777777763 4545556677777777777776 556566667777777 7777777643 3 566677777777
Q ss_pred ccCcCCcc
Q 035878 460 SHNNLSGE 467 (496)
Q Consensus 460 s~N~l~~~ 467 (496)
++|+++..
T Consensus 347 ~~N~~~~~ 354 (390)
T 3o6n_A 347 SHNDWDCN 354 (390)
T ss_dssp CSSCEEHH
T ss_pred CCCCccch
Confidence 77777654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-37 Score=330.07 Aligned_cols=303 Identities=22% Similarity=0.212 Sum_probs=147.7
Q ss_pred eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL 190 (496)
Q Consensus 111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 190 (496)
.+++++|.+. .+|..+ +.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|
T Consensus 55 ~l~l~~~~l~-~lp~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 55 IVTFKNSTMR-KLPAAL--------LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp EEEESSCEES-EECTHH--------HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEeeCCCCC-CcCHHH--------HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 5555555554 344432 3455566666666666665555556666666666666666665555555566666
Q ss_pred ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCC
Q 035878 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN 269 (496)
Q Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 269 (496)
++|++++|.+++..+..|+++++|++|++++|.+++++ ..+..+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 66666666665443444455566666666666555532 23445555555555555554321 333445555555555
Q ss_pred CCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch
Q 035878 270 ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA 349 (496)
Q Consensus 270 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 349 (496)
.+++ +...++|++|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|++|++++|.+++..|.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 4442 122234555555555544322211 1344445555444443 13344444444444444444444444
Q ss_pred hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccc
Q 035878 350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGL 429 (496)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 429 (496)
.++.+++|++|+|++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++. | +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 44444444444444444442 2333334444444444444444 3333444444444444444444422 1 3333444
Q ss_pred cccccccCCcCC
Q 035878 430 QDLLDLSYNSLT 441 (496)
Q Consensus 430 ~~LL~Ls~N~l~ 441 (496)
+.| ++++|.++
T Consensus 348 ~~L-~l~~N~~~ 358 (597)
T 3oja_B 348 KNL-TLSHNDWD 358 (597)
T ss_dssp SEE-ECCSSCEE
T ss_pred CEE-EeeCCCCC
Confidence 444 44444444
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-36 Score=298.92 Aligned_cols=307 Identities=23% Similarity=0.364 Sum_probs=203.4
Q ss_pred CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (496)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 3456777777777777763 33 366777777777777777643 33 6777777777777777764 2 3466777777
Q ss_pred EEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878 216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL 295 (496)
Q Consensus 216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 295 (496)
+|++++|.+++++. +..+++|++|++++|.....++ .+..+++|++|++++|.+
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-------------------------~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-------------------------PLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-------------------------GGTTCTTCCEEECCSSCC
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCccccc-------------------------chhhCCCCcEEEecCCCc
Confidence 77777777666554 4455555555555554332222 244445555555555554
Q ss_pred cccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhh
Q 035878 296 QGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI 375 (496)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 375 (496)
.+..+ +..+++|++|++++|.+++..+ +..+++|+++++++|.+++..+ +..+++|++|++++|++++..+ +
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 43322 4555566666666666553322 5566677777777777664433 6667777777777777764433 6
Q ss_pred cCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCC
Q 035878 376 GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQ 455 (496)
Q Consensus 376 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~ 455 (496)
..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++| ++++|++++..|..+.++++|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL-FLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE-ECCSSCCCGGGHHHHHTCTTCS
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE-ECcCCcCCCcChhHhhccccCC
Confidence 6777777777777777753 3477778888888888887753 357778888888 8888888887888888888888
Q ss_pred EEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878 456 SMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 456 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 489 (496)
+|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888887666 778888888888888875
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-36 Score=298.58 Aligned_cols=308 Identities=24% Similarity=0.312 Sum_probs=207.9
Q ss_pred CCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCC
Q 035878 97 DFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFL 176 (496)
Q Consensus 97 ~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 176 (496)
.+..+++|+ +|++++|.+. .+|. +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 39 ~~~~l~~L~-----~L~l~~~~i~-~~~~----------~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i 100 (347)
T 4fmz_A 39 TQEELESIT-----KLVVAGEKVA-SIQG----------IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI 100 (347)
T ss_dssp CHHHHTTCS-----EEECCSSCCC-CCTT----------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred cchhccccc-----EEEEeCCccc-cchh----------hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc
Confidence 456788888 7888899887 4443 6789999999999999986544 99999999999999999
Q ss_pred cccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccC
Q 035878 177 SGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK 256 (496)
Q Consensus 177 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 256 (496)
++ + +.+..+++|++|++++|.+++. +. +..+++|++|++++|.....+..+..+++|++|++++|.+.+..+ +.
T Consensus 101 ~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 174 (347)
T 4fmz_A 101 TD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA 174 (347)
T ss_dssp CC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred cC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc
Confidence 85 3 4699999999999999999854 33 889999999999999766644558888899999998888875433 66
Q ss_pred CCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 035878 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVL 336 (496)
Q Consensus 257 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 336 (496)
.+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~------------ 238 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP------------ 238 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------------
T ss_pred cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc------------
Confidence 77777777777777664432 5555666666666665554322 4444555555555554443222
Q ss_pred EccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878 337 DLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416 (496)
Q Consensus 337 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 416 (496)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|+++
T Consensus 239 --------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 239 --------------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp --------------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred --------------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence 44455555555555555432 2345555555555555555532 23555666666666666666
Q ss_pred ccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878 417 GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465 (496)
Q Consensus 417 ~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 465 (496)
+..|..+..+++|+++ ++++|++++..| +..+++|++|++++|+++
T Consensus 301 ~~~~~~l~~l~~L~~L-~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTL-FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGHHHHHTCTTCSEE-ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcChhHhhccccCCEE-EccCCccccccC--hhhhhccceeehhhhccc
Confidence 5555666666666666 666666665444 566666666776666654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-37 Score=308.43 Aligned_cols=311 Identities=21% Similarity=0.196 Sum_probs=270.3
Q ss_pred CCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCccc
Q 035878 100 SFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGP 179 (496)
Q Consensus 100 ~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 179 (496)
.+++++ ++++++|.+. .+|..+ +.++++|++|++++|.+++..+..|+.+++|++|++++|.+++.
T Consensus 43 ~l~~l~-----~l~l~~~~l~-~l~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 108 (390)
T 3o6n_A 43 TLNNQK-----IVTFKNSTMR-KLPAAL--------LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108 (390)
T ss_dssp GGCCCS-----EEEEESCEES-EECTHH--------HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCCce-----EEEecCCchh-hCChhH--------hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence 345555 7889999987 677653 57889999999999999988888999999999999999999988
Q ss_pred CCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecCCCcccCCCCcccCCC
Q 035878 180 IPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTASFNHFSGPIPTSLKSC 258 (496)
Q Consensus 180 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 258 (496)
.|..|+++++|++|++++|.++...+..+.++++|++|++++|+++++ |..+..+++|++|++++|++++. .+..+
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l 185 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLI 185 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGC
T ss_pred CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccc
Confidence 888899999999999999999955555578999999999999999995 45588899999999999999864 35678
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL 338 (496)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 338 (496)
++|++|++++|.+++. ...++|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++
T Consensus 186 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL 255 (390)
T ss_dssp TTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred cccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence 8999999999988743 345789999999999986533 2357899999999999864 57889999999999
Q ss_pred cCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCcc
Q 035878 339 SSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT 418 (496)
Q Consensus 339 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 418 (496)
++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 9999998889999999999999999999985 5667788999999999999999 5677788999999999999999854
Q ss_pred CChhccCCccccccccccCCcCCcc
Q 035878 419 IPFQIGNLVGLQDLLDLSYNSLTGE 443 (496)
Q Consensus 419 ~p~~~~~l~~L~~LL~Ls~N~l~~~ 443 (496)
+ +..+++|++| ++++|++++.
T Consensus 334 -~--~~~~~~L~~L-~l~~N~~~~~ 354 (390)
T 3o6n_A 334 -K--LSTHHTLKNL-TLSHNDWDCN 354 (390)
T ss_dssp -C--CCTTCCCSEE-ECCSSCEEHH
T ss_pred -C--chhhccCCEE-EcCCCCccch
Confidence 4 6788999999 9999999864
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-36 Score=317.43 Aligned_cols=312 Identities=23% Similarity=0.220 Sum_probs=266.0
Q ss_pred CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL 217 (496)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (496)
.+.+++.+++++|.+....+..++++++|++|+|++|.+++..|..|+.+++|++|++++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36789999999999997777778999999999999999998888899999999999999999998888889999999999
Q ss_pred ECCCCCCccccccc-cCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc
Q 035878 218 HLFINKLSGLPPQV-CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ 296 (496)
Q Consensus 218 ~L~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 296 (496)
++++|.++++|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999988775 78999999999999999988888999999999999999998653 455788999999999887
Q ss_pred ccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhc
Q 035878 297 GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG 376 (496)
Q Consensus 297 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 376 (496)
+. ...++|+.|++++|.++...+.. .++|++|++++|.+++ +..+..+++|++|++++|.+++..|..++
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 53 34467899999999887543322 3688999999998886 36678888999999999999888888888
Q ss_pred CCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCE
Q 035878 377 ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQS 456 (496)
Q Consensus 377 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~ 456 (496)
.+++|++|++++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.| ++++|++++. | +..+++|++
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L-~L~~N~l~~~-~--~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL-YLDHNSIVTL-K--LSTHHTLKN 349 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-ECCSSCCCCC-C--CCTTCCCSE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE-ECCCCCCCCc-C--hhhcCCCCE
Confidence 88899999999998885 5666677888899999988887 677778888888888 8888888854 3 667788888
Q ss_pred EEcccCcCCccc
Q 035878 457 MNLSHNNLSGEI 468 (496)
Q Consensus 457 L~Ls~N~l~~~~ 468 (496)
|++++|++++..
T Consensus 350 L~l~~N~~~~~~ 361 (597)
T 3oja_B 350 LTLSHNDWDCNS 361 (597)
T ss_dssp EECCSSCEEHHH
T ss_pred EEeeCCCCCChh
Confidence 888888887654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.3e-37 Score=298.92 Aligned_cols=253 Identities=28% Similarity=0.454 Sum_probs=230.3
Q ss_pred CCCcEEecCCCcccC--CCCcccCCCCCCcEEEccC-CCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCE
Q 035878 235 GKLINFTASFNHFSG--PIPTSLKSCSSLYRVRLES-NELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311 (496)
Q Consensus 235 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 311 (496)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888888887 7888888899999999984 8888888888999999999999999999888988999999999
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCC-CCCEEeccCCcCccccchhhcCCCCCCEEEccCCc
Q 035878 312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLT-ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNR 390 (496)
Q Consensus 312 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 390 (496)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999988999999999999999999999989999999988 999999999999999999999887 9999999999
Q ss_pred CCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccch
Q 035878 391 LSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA 470 (496)
Q Consensus 391 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 470 (496)
+++.+|..+..+++|++|++++|.+++.+|. +..+++|++| ++++|++++.+|..+.++++|++|++++|+++|.+|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEE-ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEE-ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 9988999999999999999999999977775 7889999999 9999999999999999999999999999999999998
Q ss_pred hhhcCCCCCEEeCcCCC-Cccc
Q 035878 471 SLSSMLSLVAVNLSYNN-LEGP 491 (496)
Q Consensus 471 ~l~~l~~L~~L~ls~N~-l~g~ 491 (496)
. ..+++|+.+++++|+ ++|.
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEEST
T ss_pred C-ccccccChHHhcCCCCccCC
Confidence 7 888999999999998 7774
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.4e-36 Score=296.05 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=168.4
Q ss_pred chHHHHHHHHHHhcCC-C-CCCCCCCCCCCCCCCCCCCCCCccccceeeC---------CCCCEEEEEcCCCCCccccCC
Q 035878 27 SLTETEALLKWKETLV-N-QSIVQSWVIPASNSSNSTTPSPCRWSGIVCN---------DAGSVTEINLANTGLAGTLHD 95 (496)
Q Consensus 27 ~~~~~~~ll~~k~~~~-~-~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~---------~~~~v~~L~L~~~~l~g~~~~ 95 (496)
..+|++||++||+++. | .+.+.+|.... ....++|.|.|+.|+ ...+|++|+|+++.+. .+++
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~-----~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTTHHHHHHHHT-----TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred CchHHHHHHHHHHhccCCchhhhhhhcccc-----cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 3489999999999984 5 45567884110 012689999999995 2356677777666665 4444
Q ss_pred CCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC
Q 035878 96 LDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF 175 (496)
Q Consensus 96 ~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 175 (496)
.+..+++|+ +|++++|.++ .+|.. ++++++|++|++++|.++ .+|..++++++|++|++++|.
T Consensus 99 -~l~~l~~L~-----~L~L~~n~l~-~lp~~---------~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 99 -QAFRLSHLQ-----HMTIDAAGLM-ELPDT---------MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp -CGGGGTTCS-----EEEEESSCCC-CCCSC---------GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred -hhhhCCCCC-----EEECCCCCcc-chhHH---------HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence 444455544 3444455554 44433 344444555555555444 444444444444555444444
Q ss_pred CcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCccc
Q 035878 176 LSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSL 255 (496)
Q Consensus 176 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l 255 (496)
+.+.+|..+... ..+..+.++++|++|++++|+++.+|..+..+++|++|++++|++++ +|..+
T Consensus 162 ~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 162 ELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp TCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred CccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 444444433320 00000112566666666666666666666666666666666666653 44456
Q ss_pred CCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCE
Q 035878 256 KSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVV 335 (496)
Q Consensus 256 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 335 (496)
..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++.+++|+.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 66666777777776666666666677777777777777777777777777777777777777777777777777777777
Q ss_pred EEccCCcCc
Q 035878 336 LDLSSNQLS 344 (496)
Q Consensus 336 L~Ls~n~l~ 344 (496)
+++..+.+.
T Consensus 306 l~l~~~~~~ 314 (328)
T 4fcg_A 306 ILVPPHLQA 314 (328)
T ss_dssp EECCGGGSC
T ss_pred EeCCHHHHH
Confidence 777766544
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.3e-34 Score=280.83 Aligned_cols=295 Identities=21% Similarity=0.241 Sum_probs=165.3
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF 220 (496)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (496)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5677777777666 4454443 567777777777776666677777777777777777776667777777788888887
Q ss_pred CCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCC--ccccccCCCCCccEEEcccCccccc
Q 035878 221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG--DLEQDFGIYPNLTYIDLSYNRLQGE 298 (496)
Q Consensus 221 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~ 298 (496)
+|+++.+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 777777666554 566666666666665555556666666666666666542 334455555556666665555543
Q ss_pred CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCC
Q 035878 299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAL 378 (496)
Q Consensus 299 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 378 (496)
+|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 232221 44555555555555444444555555555555555554444444444455555555555444 344444444
Q ss_pred CCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc--cchhhhcCCCCCCE
Q 035878 379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG--EIPAQLEKLTSLQS 456 (496)
Q Consensus 379 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~--~~p~~l~~l~~L~~ 456 (496)
++|++|++++|++++..+..|.... .......++.+ ++++|.+.. ..|..|..+.+++.
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l-~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGV-SLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEE-ECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred CCcCEEECCCCcCCccChhhcCCcc------------------cccccccccce-EeecCcccccccCccccccccceeE
Confidence 4444444444444433333322110 00012344455 566665542 34455666666666
Q ss_pred EEcccCc
Q 035878 457 MNLSHNN 463 (496)
Q Consensus 457 L~Ls~N~ 463 (496)
++|++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 6666663
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.1e-34 Score=282.79 Aligned_cols=288 Identities=22% Similarity=0.248 Sum_probs=156.5
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF 220 (496)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (496)
++++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4444442 566777777777665556666777777777777777766666667777777777777
Q ss_pred CCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCC--ccccccCCCCCccEEEcccCccccc
Q 035878 221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG--DLEQDFGIYPNLTYIDLSYNRLQGE 298 (496)
Q Consensus 221 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~ 298 (496)
+|+++.+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++. ..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 777666665543 455555555555554444445555555555555555532 333334433 45555555554443
Q ss_pred CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCC
Q 035878 299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAL 378 (496)
Q Consensus 299 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 378 (496)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+
T Consensus 187 l~~~~~--------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 187 IPKDLP--------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CCSSSC--------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred cCcccc--------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 222221 344444444444444434444444455555555555544444444455
Q ss_pred CCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccC------CccccccccccCCcCC--ccchhhhcC
Q 035878 379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGN------LVGLQDLLDLSYNSLT--GEIPAQLEK 450 (496)
Q Consensus 379 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~LL~Ls~N~l~--~~~p~~l~~ 450 (496)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.. ...++.+ ++++|.+. +..|..|..
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L-~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI-SLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE-ECCSSSSCGGGSCGGGGTT
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce-EeecCcccccccCcccccc
Confidence 55555555555554 44444555555555555555555433333332 2445566 66666665 455666677
Q ss_pred CCCCCEEEcccCc
Q 035878 451 LTSLQSMNLSHNN 463 (496)
Q Consensus 451 l~~L~~L~Ls~N~ 463 (496)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7777777777664
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.1e-38 Score=326.70 Aligned_cols=354 Identities=19% Similarity=0.159 Sum_probs=252.1
Q ss_pred CCCCCCCcEEEccCCcCcc----cCCcCCCCCCCCCEEEccCCCCcccCCcccc-CCC----CCceEecccCcCCc----
Q 035878 136 MTGLLGLKNFLLQDNMLSG----RIPEEIGNCKLLTLLALDGNFLSGPIPSSLG-NLS----DLAVLAVASNQLSG---- 202 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~----~L~~L~L~~n~l~~---- 202 (496)
+..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. .++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 3456677777777777764 3455566777888888888877654443332 344 58888888887773
Q ss_pred ccCccCCCCCCCCEEECCCCCCcc-----cccccc-CCCCCcEEecCCCcccCC----CCcccCCCCCCcEEEccCCCCC
Q 035878 203 EIPANIGTLSKLTDLHLFINKLSG-----LPPQVC-KGGKLINFTASFNHFSGP----IPTSLKSCSSLYRVRLESNELT 272 (496)
Q Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~-~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 272 (496)
.++..+..+++|++|++++|.+++ +...+. ..++|++|++++|++++. ++..+..+++|++|++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 456777778888888888887765 222221 245788888888877763 3455666788888888888876
Q ss_pred CccccccC-----CCCCccEEEcccCccccc----CCcCcCCCCCCCEEEccCCcccccC-----CcccCCCCCCCEEEc
Q 035878 273 GDLEQDFG-----IYPNLTYIDLSYNRLQGE----VSPKWGKCQKLTLLGLAGNSIGGKI-----PAEIGSLSQLVVLDL 338 (496)
Q Consensus 273 ~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L 338 (496)
+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 54443332 256888888888888763 4556677888888888888877542 233346788999999
Q ss_pred cCCcCccc----cchhhcCCCCCCEEeccCCcCccccchhhcC-----CCCCCEEEccCCcCCCC----ChhhhhCCCCC
Q 035878 339 SSNQLSGE----IPAQIGNLTELSTLSLNGNDISGPIPEEIGA-----LLNLDSLDLSMNRLSGP----IPKQIGELRDL 405 (496)
Q Consensus 339 s~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L 405 (496)
++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 99988854 5667777889999999999887654444433 26899999999988865 45667778899
Q ss_pred CEEeccCccCCccCChhccC-----CccccccccccCCcCCc----cchhhhcCCCCCCEEEcccCcCCcccchhhh---
Q 035878 406 RSLSLSQNNLNGTIPFQIGN-----LVGLQDLLDLSYNSLTG----EIPAQLEKLTSLQSMNLSHNNLSGEIPASLS--- 473 (496)
Q Consensus 406 ~~L~Ls~n~l~~~~p~~~~~-----l~~L~~LL~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--- 473 (496)
++|++++|.+++..+..+.. .+.|++| ++++|++++ .+|..+..+++|++|++++|++++.-...+.
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L-~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l 422 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVL-WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEE-ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence 99999999887665555443 6688888 999999886 6788888889999999999998865333332
Q ss_pred --cCCCCCEEeCcCCCCcc
Q 035878 474 --SMLSLVAVNLSYNNLEG 490 (496)
Q Consensus 474 --~l~~L~~L~ls~N~l~g 490 (496)
...+|+.|++.++.+..
T Consensus 423 ~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 423 RQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TSTTCCCCEEECTTCCCCH
T ss_pred ccCCcchhheeecccccCH
Confidence 23468888888777654
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=5.9e-38 Score=323.30 Aligned_cols=351 Identities=22% Similarity=0.174 Sum_probs=286.9
Q ss_pred CCCcEEEccCCcCcccCCcC-CCCCCCCCEEEccCCCCcc----cCCccccCCCCCceEecccCcCCcccCccC-CCCC-
Q 035878 140 LGLKNFLLQDNMLSGRIPEE-IGNCKLLTLLALDGNFLSG----PIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLS- 212 (496)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~- 212 (496)
++|++|++++|.++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56899999999988654443 6789999999999999985 356778889999999999999976444333 2344
Q ss_pred ---CCCEEECCCCCCcc-----ccccccCCCCCcEEecCCCcccCCCCccc-----CCCCCCcEEEccCCCCCCcc----
Q 035878 213 ---KLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFNHFSGPIPTSL-----KSCSSLYRVRLESNELTGDL---- 275 (496)
Q Consensus 213 ---~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~---- 275 (496)
+|++|++++|+++. ++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 68888999999999999999876444332 23568999999999998743
Q ss_pred ccccCCCCCccEEEcccCcccccCCcCcC-----CCCCCCEEEccCCccccc----CCcccCCCCCCCEEEccCCcCccc
Q 035878 276 EQDFGIYPNLTYIDLSYNRLQGEVSPKWG-----KCQKLTLLGLAGNSIGGK----IPAEIGSLSQLVVLDLSSNQLSGE 346 (496)
Q Consensus 276 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~ 346 (496)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55566789999999999998765444443 356999999999999864 467778899999999999998864
Q ss_pred c-----chhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCCChhhhhC-----CCCCCEEeccC
Q 035878 347 I-----PAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGPIPKQIGE-----LRDLRSLSLSQ 412 (496)
Q Consensus 347 ~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~Ls~ 412 (496)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 3 23334689999999999999864 6777888999999999999997655544443 36999999999
Q ss_pred ccCCcc----CChhccCCccccccccccCCcCCccchhhhcC-----CCCCCEEEcccCcCCc----ccchhhhcCCCCC
Q 035878 413 NNLNGT----IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK-----LTSLQSMNLSHNNLSG----EIPASLSSMLSLV 479 (496)
Q Consensus 413 n~l~~~----~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~ 479 (496)
|.+++. ++..+..+++|++| ++++|++++..+..+.. .++|++|++++|++++ .+|..+..+++|+
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L-~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCchHHHHHHHHHHhhCCCccEE-EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 999876 56677788999999 99999999766655543 7899999999999997 7899999999999
Q ss_pred EEeCcCCCCccc
Q 035878 480 AVNLSYNNLEGP 491 (496)
Q Consensus 480 ~L~ls~N~l~g~ 491 (496)
+||+++|++++.
T Consensus 402 ~L~l~~N~i~~~ 413 (461)
T 1z7x_W 402 ELDLSNNCLGDA 413 (461)
T ss_dssp EEECCSSSCCHH
T ss_pred EEECCCCCCCHH
Confidence 999999999764
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.7e-33 Score=277.47 Aligned_cols=288 Identities=21% Similarity=0.284 Sum_probs=214.3
Q ss_pred CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCC
Q 035878 165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASF 244 (496)
Q Consensus 165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~ 244 (496)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 92 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK------------------ 92 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------------------
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc------------------
Confidence 4666666666665 4555443 466666666666665555556666666666666665555
Q ss_pred CcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc--cc
Q 035878 245 NHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG--GK 322 (496)
Q Consensus 245 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~ 322 (496)
..|..+.++++|++|++++|+++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++ +.
T Consensus 93 -----~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 93 -----IHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp -----ECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred -----cCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 334444555555555555555542 232222 56666677766666555555667777777777777775 35
Q ss_pred CCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCC
Q 035878 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGEL 402 (496)
Q Consensus 323 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~ 402 (496)
.+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 66677777 88999999999885 555543 799999999999998888899999999999999999998888889999
Q ss_pred CCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcC------CCCCCEEEcccCcCC--cccchhhhc
Q 035878 403 RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK------LTSLQSMNLSHNNLS--GEIPASLSS 474 (496)
Q Consensus 403 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~--~~~p~~l~~ 474 (496)
++|++|++++|+++ .+|..+..+++|+++ ++++|++++..+..|.. ..+|+.|++++|++. +..|..|..
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVV-YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEE-ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEE-ECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 99999999999998 889899999999999 99999999776666655 367999999999998 677889999
Q ss_pred CCCCCEEeCcCCC
Q 035878 475 MLSLVAVNLSYNN 487 (496)
Q Consensus 475 l~~L~~L~ls~N~ 487 (496)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 9999999999985
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.9e-33 Score=273.37 Aligned_cols=288 Identities=23% Similarity=0.284 Sum_probs=177.6
Q ss_pred CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecC
Q 035878 165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTAS 243 (496)
Q Consensus 165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~ 243 (496)
++++++++++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|+++++ |..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788888888877 4665554 6788888888888876666788888888888888888774 6667777777777777
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc--cCCcCcCCCCCCCEEEccCCcccc
Q 035878 244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG--EVSPKWGKCQKLTLLGLAGNSIGG 321 (496)
Q Consensus 244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~ 321 (496)
+|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 77766 3444333 566666666666666555556666666666666666542 444455555555555555555552
Q ss_pred cCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhC
Q 035878 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE 401 (496)
Q Consensus 322 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 401 (496)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~~~~~ 238 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN------------------------GSLAN 238 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT------------------------TTGGG
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh------------------------hhccC
Confidence 232222 445555555555544444444445555555555554444444 44444
Q ss_pred CCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhc------CCCCCCEEEcccCcCCc--ccchhhh
Q 035878 402 LRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE------KLTSLQSMNLSHNNLSG--EIPASLS 473 (496)
Q Consensus 402 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~------~l~~L~~L~Ls~N~l~~--~~p~~l~ 473 (496)
+++|++|++++|+++ .+|..+..+++|+++ ++++|++++..+..|. ..+.++.|++++|++.. ..|..|.
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L-~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVV-YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEE-ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEE-ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 455555555555544 444445555555555 5555555543333332 24688999999999964 5678899
Q ss_pred cCCCCCEEeCcCCC
Q 035878 474 SMLSLVAVNLSYNN 487 (496)
Q Consensus 474 ~l~~L~~L~ls~N~ 487 (496)
.+..++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 99999999999986
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=270.00 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=115.4
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF 220 (496)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (496)
+|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..+.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 34444555554444444445555555555555555554444445555555555555555543333334555555555555
Q ss_pred CCCCccccc--cccCCCCCcEEecCCC-cccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc
Q 035878 221 INKLSGLPP--QVCKGGKLINFTASFN-HFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG 297 (496)
Q Consensus 221 ~n~l~~lp~--~l~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 297 (496)
+|+++++|. .+..+++|++|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 555554443 3333444444444444 2333333344444445555555554444444444444455555555544432
Q ss_pred cCCcCcCCCCCCCEEEccCCcccccCCccc---CCCCCCCEEEccCCcCcc----ccchhhcCCCCCCEEeccCCcCccc
Q 035878 298 EVSPKWGKCQKLTLLGLAGNSIGGKIPAEI---GSLSQLVVLDLSSNQLSG----EIPAQIGNLTELSTLSLNGNDISGP 370 (496)
Q Consensus 298 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~ 370 (496)
..+..+..+++|++|++++|++++..+..+ .....++.++++++.+++ .+|..+..+++|++|++++|+++ .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 222222234445555555554443322221 123345555555555443 23444445555555555555554 2
Q ss_pred cchh-hcCCCCCCEEEccCCcCCCC
Q 035878 371 IPEE-IGALLNLDSLDLSMNRLSGP 394 (496)
Q Consensus 371 ~~~~-~~~l~~L~~L~Ls~n~l~~~ 394 (496)
+|.. +..+++|++|++++|++.+.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 3322 24444555555555544443
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=7.1e-35 Score=309.81 Aligned_cols=376 Identities=16% Similarity=0.132 Sum_probs=272.7
Q ss_pred CCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCC-CCC-CcEEEccCCc-Ccc-cCCcCCCCCCCCCEEEccCCC
Q 035878 100 SFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTG-LLG-LKNFLLQDNM-LSG-RIPEEIGNCKLLTLLALDGNF 175 (496)
Q Consensus 100 ~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~-l~~-L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~ 175 (496)
.+++|+ +|+|++|.+++..+.. +.. +++ |++|++++|. ++. .++....++++|++|+|++|.
T Consensus 110 ~~~~L~-----~L~L~~~~i~~~~~~~---------l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 110 NLRQLK-----SVHFRRMIVSDLDLDR---------LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp HCTTCC-----EEEEESCBCCHHHHHH---------HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred hCCCCC-----eEEeeccEecHHHHHH---------HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence 456666 5666777666544333 223 333 8888888775 221 122223467888888888887
Q ss_pred Cccc----CCccccCCCCCceEecccCcCC----cccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcc
Q 035878 176 LSGP----IPSSLGNLSDLAVLAVASNQLS----GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF 247 (496)
Q Consensus 176 l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l 247 (496)
+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.++|..+..+++|++|+++....
T Consensus 176 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 176 FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCC
T ss_pred ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccc
Confidence 7655 3334556788888888888876 2344445677888888888888888887777888888888875332
Q ss_pred c---CCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCC-cCcCCCCCCCEEEccCCcccccC
Q 035878 248 S---GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS-PKWGKCQKLTLLGLAGNSIGGKI 323 (496)
Q Consensus 248 ~---~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~ 323 (496)
. +..+..+..+++|+.+++.++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.+
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l 334 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL 334 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred ccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHH
Confidence 2 2344567778888888888753 34567777788999999999998765433 33578899999999843222334
Q ss_pred CcccCCCCCCCEEEccC-----------CcCccc-cchhhcCCCCCCEEeccCCcCccccchhhcC-CCCCCEEEcc---
Q 035878 324 PAEIGSLSQLVVLDLSS-----------NQLSGE-IPAQIGNLTELSTLSLNGNDISGPIPEEIGA-LLNLDSLDLS--- 387 (496)
Q Consensus 324 ~~~l~~l~~L~~L~Ls~-----------n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls--- 387 (496)
+.....+++|++|++++ |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 44446788999999993 566643 3333556899999999999998877777766 8999999996
Q ss_pred -CCcCCCC-----ChhhhhCCCCCCEEeccCcc--CCccCChhccC-CccccccccccCCcCCc-cchhhhcCCCCCCEE
Q 035878 388 -MNRLSGP-----IPKQIGELRDLRSLSLSQNN--LNGTIPFQIGN-LVGLQDLLDLSYNSLTG-EIPAQLEKLTSLQSM 457 (496)
Q Consensus 388 -~n~l~~~-----~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~~~~-l~~L~~LL~Ls~N~l~~-~~p~~l~~l~~L~~L 457 (496)
.|.+++. ++..+.++++|++|++++|. +++..+..+.. +++|++| ++++|++++ .++..+.++++|++|
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE-EECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe-eccCCCCCHHHHHHHHhcCcccCee
Confidence 6778763 45557789999999998643 77666655554 8889999 999999987 356667889999999
Q ss_pred EcccCcCCcc-cchhhhcCCCCCEEeCcCCCCccc
Q 035878 458 NLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLEGP 491 (496)
Q Consensus 458 ~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~ 491 (496)
++++|++++. ++..+..+++|++|++++|++++.
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9999999765 455567899999999999998865
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=3e-32 Score=270.87 Aligned_cols=276 Identities=18% Similarity=0.216 Sum_probs=149.3
Q ss_pred CCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccc-cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEE
Q 035878 187 LSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP-QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVR 265 (496)
Q Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 265 (496)
++...+.+++++.++ .+|..+. ++|++|++++|+++++|. .+..+++|++|++++|++++..|..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444455666666666 4555443 467777777777766554 556666666666666666665556666666666666
Q ss_pred ccCCCCCCccccccCCCCCccEEEcccCcccccCC-cCcCCCCCCCEEEccCC-cccccCCcccCCCCCCCEEEccCCcC
Q 035878 266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS-PKWGKCQKLTLLGLAGN-SIGGKIPAEIGSLSQLVVLDLSSNQL 343 (496)
Q Consensus 266 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l 343 (496)
+++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+++..+..++.+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666665444446666666666666666654322 24556666666666666 34444455556666666666666666
Q ss_pred ccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhh---CCCCCCEEeccCccCCc---
Q 035878 344 SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG---ELRDLRSLSLSQNNLNG--- 417 (496)
Q Consensus 344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~~~~L~~L~Ls~n~l~~--- 417 (496)
++..|..+..+++|++|++++|+++...+..+..+++|++|++++|++++..+..+. ....++.++++++.+++
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 655555566666666666666665432222233455666666666665543322221 23344444444444433
Q ss_pred -cCChhccCCccccccccccCCcCCccchhh-hcCCCCCCEEEcccCcCCcc
Q 035878 418 -TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 418 -~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ 467 (496)
.+|..+..+++|++| ++++|+++ .+|.. |.++++|++|++++|++++.
T Consensus 267 ~~l~~~l~~l~~L~~L-~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 267 FQVMKLLNQISGLLEL-EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHTCTTCCEE-ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhHHHHhcccCCCEE-ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 233334444444444 44444444 22322 24444444444444444433
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.3e-31 Score=257.98 Aligned_cols=247 Identities=20% Similarity=0.193 Sum_probs=129.7
Q ss_pred EEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcc--cCccCCCCCCCCEEECCC
Q 035878 144 NFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGE--IPANIGTLSKLTDLHLFI 221 (496)
Q Consensus 144 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~ 221 (496)
.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4444444444 3333222 3555555555555533333345555555555555555421 234444556666666666
Q ss_pred CCCccccccccCCCCCcEEecCCCcccCCCC-cccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc-cC
Q 035878 222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIP-TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG-EV 299 (496)
Q Consensus 222 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~ 299 (496)
|.++.+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 6665555555555555555555555554332 345555566666666665555555555555556666666555554 34
Q ss_pred CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL 379 (496)
Q Consensus 300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 379 (496)
|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 55555555555555555555555455555555555555555555544444455555555555555555555554444442
Q ss_pred -CCCEEEccCCcCCC
Q 035878 380 -NLDSLDLSMNRLSG 393 (496)
Q Consensus 380 -~L~~L~Ls~n~l~~ 393 (496)
+|++|++++|.+++
T Consensus 248 ~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 248 SSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCCEEECTTCCEEC
T ss_pred ccCCEEEccCCCeec
Confidence 45555555555543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=9e-31 Score=254.92 Aligned_cols=246 Identities=24% Similarity=0.286 Sum_probs=145.2
Q ss_pred CEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc---cccccCCCCCcEEecC
Q 035878 167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL---PPQVCKGGKLINFTAS 243 (496)
Q Consensus 167 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~l~ 243 (496)
+.++.+++.++ .+|..+. ++|++|++++|+++...+..|.++++|++|++++|+++.+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57788888777 5665443 6788888888888754445577888888888888887753 4555566677777777
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccc-
Q 035878 244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG- 321 (496)
Q Consensus 244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~- 321 (496)
+|.+++ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 776653 44556666666666666666654433 345555556666665555555555555555555555555555554
Q ss_pred cCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhC
Q 035878 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE 401 (496)
Q Consensus 322 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 401 (496)
..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 34445555555555555555555444445555555555555555555444444444555555555555555444444444
Q ss_pred CC-CCCEEeccCccCC
Q 035878 402 LR-DLRSLSLSQNNLN 416 (496)
Q Consensus 402 ~~-~L~~L~Ls~n~l~ 416 (496)
++ +|++|++++|+++
T Consensus 246 ~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCTTCCEEECTTCCEE
T ss_pred hhccCCEEEccCCCee
Confidence 42 4555555555444
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.6e-30 Score=253.99 Aligned_cols=225 Identities=23% Similarity=0.274 Sum_probs=147.9
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL 338 (496)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 338 (496)
..++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 33333444444455555544444 44444444555555555555554 34444555555555555
Q ss_pred cCCcCccccchhhc---------CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEe
Q 035878 339 SSNQLSGEIPAQIG---------NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLS 409 (496)
Q Consensus 339 s~n~l~~~~~~~l~---------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 409 (496)
++|.+.+.+|..+. .+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 55544444444433 4777888888888777 677777777888888888888774 555677778888888
Q ss_pred ccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878 410 LSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 410 Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 489 (496)
+++|++.+.+|..++.+++|++| ++++|++.+.+|..+.++++|++|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L-~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRL-ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEE-ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEE-ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88887777788778888888887 88888877788877888888888888888888888888888888888887766543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.7e-30 Score=247.93 Aligned_cols=253 Identities=21% Similarity=0.174 Sum_probs=160.6
Q ss_pred ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCC
Q 035878 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN 269 (496)
Q Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 269 (496)
++++.+++.++ .+|..+ .++|++|++++|.+++++ ..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56677777766 455433 457777777777777754 34666677777777777777666666777777777777777
Q ss_pred C-CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccc
Q 035878 270 E-LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIP 348 (496)
Q Consensus 270 ~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 348 (496)
. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 555556666667777777777777766666666666777777777777665555556666677777777776665444
Q ss_pred hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcc
Q 035878 349 AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVG 428 (496)
Q Consensus 349 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 428 (496)
..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++....+.. .-...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 45666666777777777666666666666666666666666666655555666666666666666665332211 11122
Q ss_pred ccccccccCCcCCccchhhh
Q 035878 429 LQDLLDLSYNSLTGEIPAQL 448 (496)
Q Consensus 429 L~~LL~Ls~N~l~~~~p~~l 448 (496)
++.+ ..+.+.+.+..|..+
T Consensus 250 l~~~-~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 250 LQKF-RGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHC-CSEECCCBEEESGGG
T ss_pred HHhc-ccccCccccCCchHh
Confidence 3344 444555554455444
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.1e-29 Score=242.64 Aligned_cols=254 Identities=21% Similarity=0.173 Sum_probs=159.3
Q ss_pred CEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecCCC
Q 035878 167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTASFN 245 (496)
Q Consensus 167 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n 245 (496)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.++++ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 345433 35667777777766655555666667777777777766663 555666667777777766
Q ss_pred c-ccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC
Q 035878 246 H-FSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP 324 (496)
Q Consensus 246 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 324 (496)
. ++...|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 555556666666777777777777666666666666677777777776665555556666677777777776665555
Q ss_pred cccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCC
Q 035878 325 AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRD 404 (496)
Q Consensus 325 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 404 (496)
..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+.. .-...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 55666667777777777766666666666677777777777776555555666667777777777665433211 11122
Q ss_pred CCEEeccCccCCccCChhcc
Q 035878 405 LRSLSLSQNNLNGTIPFQIG 424 (496)
Q Consensus 405 L~~L~Ls~n~l~~~~p~~~~ 424 (496)
++.+..+.+.+....|..+.
T Consensus 250 l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHCCSEECCCBEEESGGGT
T ss_pred HHhcccccCccccCCchHhC
Confidence 33334555566555565543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.1e-29 Score=255.35 Aligned_cols=248 Identities=20% Similarity=0.200 Sum_probs=187.8
Q ss_pred CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878 213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY 292 (496)
Q Consensus 213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 292 (496)
..+.++.++..++.+|..+. +++++|++++|++++..|..|.++++|++|+|++|.+++..+..|..+++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35678888888888887654 6788888888888887778888888888888888888877777788888888888888
Q ss_pred CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCc-CccccchhhcCCCCCCEEeccCCcCcccc
Q 035878 293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQ-LSGEIPAQIGNLTELSTLSLNGNDISGPI 371 (496)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 371 (496)
|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..+..+++|++|++++|++++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 88887666667778888888888888876666677788888888888744 443333457777888888888887774 3
Q ss_pred chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL 451 (496)
Q Consensus 372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l 451 (496)
| .+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++| +|++|++++..+..+..+
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL-NLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCSCCCTTSSTTC
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE-ECCCCcCCccChHHhccc
Confidence 3 46667777777777777777667777777777777777777777767777777777777 777777776666666777
Q ss_pred CCCCEEEcccCcCC
Q 035878 452 TSLQSMNLSHNNLS 465 (496)
Q Consensus 452 ~~L~~L~Ls~N~l~ 465 (496)
++|++|+|++|++.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 77777777777764
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.2e-32 Score=292.61 Aligned_cols=391 Identities=14% Similarity=0.098 Sum_probs=291.9
Q ss_pred CCCEEEEEcCCCCCccccCCCCCCC-CCC-CceeccceEEccCCc-ccc-cCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 035878 76 AGSVTEINLANTGLAGTLHDLDFSS-FPN-LLRFDVYELDVSRNN-MTG-GIDPRLFPDDKNQPMTGLLGLKNFLLQDNM 151 (496)
Q Consensus 76 ~~~v~~L~L~~~~l~g~~~~~~l~~-l~~-L~~L~L~~L~Ls~n~-l~~-~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~ 151 (496)
..++++|+|+++.+++.... .+.. ++. |+ +|++++|. ++. .++.. ..++++|++|+|++|.
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~-----~L~L~~~~~~~~~~l~~~---------~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLD-RLAKARADDLE-----TLKLDKCSGFTTDGLLSI---------VTHCRKIKTLLMEESS 175 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHH-HHHHHHGGGCC-----EEEEESCEEEEHHHHHHH---------HHHCTTCSEEECTTCE
T ss_pred CCCCCeEEeeccEecHHHHH-HHHHhccccCc-----EEECcCCCCcCHHHHHHH---------HhhCCCCCEEECcccc
Confidence 35799999999987765433 3433 333 66 66777765 221 11110 2468999999999999
Q ss_pred Cccc----CCcCCCCCCCCCEEEccCCCCc----ccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCC
Q 035878 152 LSGR----IPEEIGNCKLLTLLALDGNFLS----GPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINK 223 (496)
Q Consensus 152 l~~~----~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (496)
+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++...
T Consensus 176 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 176 FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCC
T ss_pred ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccc
Confidence 8765 3334567899999999999997 3455556789999999999999885 77888899999999998643
Q ss_pred Cc----cccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccEEEcccCccccc
Q 035878 224 LS----GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGE 298 (496)
Q Consensus 224 l~----~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~ 298 (496)
.. ..+..+..+++|+.++++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 333 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred cccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence 22 255667788999999998853 34677888889999999999999765443 3468899999999994433333
Q ss_pred CCcCcCCCCCCCEEEcc-----------CCcccccC-CcccCCCCCCCEEEccCCcCccccchhhcC-CCCCCEEecc--
Q 035878 299 VSPKWGKCQKLTLLGLA-----------GNSIGGKI-PAEIGSLSQLVVLDLSSNQLSGEIPAQIGN-LTELSTLSLN-- 363 (496)
Q Consensus 299 ~~~~~~~~~~L~~L~L~-----------~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls-- 363 (496)
++.....+++|++|+++ .+.+++.. +.....+++|++|+++.|.+++..+..+.. +++|++|+++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 44444678999999999 35666432 223456899999999999999877777765 9999999996
Q ss_pred --CCcCccc-----cchhhcCCCCCCEEEccCCc--CCCCChhhhh-CCCCCCEEeccCccCCc-cCChhccCCcccccc
Q 035878 364 --GNDISGP-----IPEEIGALLNLDSLDLSMNR--LSGPIPKQIG-ELRDLRSLSLSQNNLNG-TIPFQIGNLVGLQDL 432 (496)
Q Consensus 364 --~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~-~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 432 (496)
.|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|++++|++++ .++..+..+++|++|
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 6788763 44457779999999998654 6665555554 48999999999999987 345566889999999
Q ss_pred ccccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcccchhh-hcCCCCC--EEeCc
Q 035878 433 LDLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGEIPASL-SSMLSLV--AVNLS 484 (496)
Q Consensus 433 L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~--~L~ls 484 (496)
++++|.+++. ++..+..+++|++|++++|++++.-...+ ..++.+. .++.+
T Consensus 494 -~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 494 -EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp -EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred -eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9999999865 45556789999999999999987633333 3455543 44444
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.4e-29 Score=254.35 Aligned_cols=248 Identities=24% Similarity=0.234 Sum_probs=205.9
Q ss_pred CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878 213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY 292 (496)
Q Consensus 213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 292 (496)
..+.++..+..++.+|..+. ++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45688999999999998765 6889999999999888888899999999999999999887778888899999999999
Q ss_pred CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc-chhhcCCCCCCEEeccCCcCcccc
Q 035878 293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI-PAQIGNLTELSTLSLNGNDISGPI 371 (496)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~ 371 (496)
|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|...+.+ +..|..+++|++|++++|+++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 9988777777888899999999999988777778888889999999885433344 446888888888888888887 44
Q ss_pred chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL 451 (496)
Q Consensus 372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l 451 (496)
| .+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++| +|++|++++..+..+..+
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI-NLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE-ECTTSCCCCCCTTTTSSC
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE-ECCCCCCCccChhHhccc
Confidence 5 46778888888888888887778888888888888888888887777788888888888 888888887667777888
Q ss_pred CCCCEEEcccCcCC
Q 035878 452 TSLQSMNLSHNNLS 465 (496)
Q Consensus 452 ~~L~~L~Ls~N~l~ 465 (496)
++|++|+|++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 88888888888875
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.7e-29 Score=254.63 Aligned_cols=248 Identities=21% Similarity=0.177 Sum_probs=222.5
Q ss_pred CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEcc
Q 035878 189 DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE 267 (496)
Q Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 267 (496)
..+.++.++..++ .+|..+. +++++|++++|+++++ |..+..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888887 5776654 6999999999999994 6778899999999999999999888999999999999999
Q ss_pred CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC-cccccCCcccCCCCCCCEEEccCCcCccc
Q 035878 268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN-SIGGKIPAEIGSLSQLVVLDLSSNQLSGE 346 (496)
Q Consensus 268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 346 (496)
+|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++| .+....+..|..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999887788999999999999999999887778999999999999995 45544455789999999999999999854
Q ss_pred cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCC
Q 035878 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL 426 (496)
Q Consensus 347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l 426 (496)
| .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 47889999999999999999889999999999999999999998889999999999999999999997777888899
Q ss_pred ccccccccccCCcCCc
Q 035878 427 VGLQDLLDLSYNSLTG 442 (496)
Q Consensus 427 ~~L~~LL~Ls~N~l~~ 442 (496)
++|+.+ +|++|.+..
T Consensus 290 ~~L~~L-~L~~Np~~C 304 (452)
T 3zyi_A 290 RYLVEL-HLHHNPWNC 304 (452)
T ss_dssp TTCCEE-ECCSSCEEC
T ss_pred cCCCEE-EccCCCcCC
Confidence 999999 999998874
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.3e-29 Score=253.13 Aligned_cols=248 Identities=22% Similarity=0.227 Sum_probs=222.7
Q ss_pred CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEcc
Q 035878 189 DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE 267 (496)
Q Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 267 (496)
..+.++..+..++ .+|..+. +++++|++++|+++.++ ..+..+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4568888888887 6777664 68999999999999954 678889999999999999998888899999999999999
Q ss_pred CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEccCCcCccc
Q 035878 268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS-IGGKIPAEIGSLSQLVVLDLSSNQLSGE 346 (496)
Q Consensus 268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 346 (496)
+|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+ +....+..|.++++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999998877789999999999999999998888889999999999999954 55445557899999999999999998 4
Q ss_pred cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCC
Q 035878 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL 426 (496)
Q Consensus 347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l 426 (496)
+| .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 47889999999999999998889999999999999999999998888899999999999999999998777888999
Q ss_pred ccccccccccCCcCCc
Q 035878 427 VGLQDLLDLSYNSLTG 442 (496)
Q Consensus 427 ~~L~~LL~Ls~N~l~~ 442 (496)
++|+.+ +|++|.+..
T Consensus 279 ~~L~~L-~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERI-HLHHNPWNC 293 (440)
T ss_dssp TTCCEE-ECCSSCEEC
T ss_pred cCCCEE-EcCCCCccC
Confidence 999999 999999864
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=7.6e-31 Score=256.78 Aligned_cols=257 Identities=22% Similarity=0.212 Sum_probs=143.6
Q ss_pred CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCC
Q 035878 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI 221 (496)
Q Consensus 142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (496)
++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455666666654444455566777777777777776666677777777777777777765443 66777777777777
Q ss_pred CCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCc
Q 035878 222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP 301 (496)
Q Consensus 222 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 301 (496)
|++++++. .++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 77766552 25666666666666543322 234555555555555554444555555555555555555544333
Q ss_pred Cc-CCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCC
Q 035878 302 KW-GKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN 380 (496)
Q Consensus 302 ~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 380 (496)
.+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++ +|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-------------------------~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 215 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-------------------------KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-------------------------EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred HHhhccCcCCEEECCCCcCccc-------------------------cc-ccccccCCEEECCCCcCCc-chhhhcccCc
Confidence 33 2344455555554444432 11 1124455555555555542 2233444555
Q ss_pred CCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC-ccCChhccCCcccccccccc
Q 035878 381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN-GTIPFQIGNLVGLQDLLDLS 436 (496)
Q Consensus 381 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~LL~Ls 436 (496)
|++|++++|+++ .+|..+..+++|++|++++|++. +.+|..+..++.|+.+ +++
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l-~l~ 270 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV-AKQ 270 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH-HHH
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE-ECC
Confidence 555555555555 34444555555555555555555 4455555555555555 555
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.2e-28 Score=257.36 Aligned_cols=268 Identities=27% Similarity=0.351 Sum_probs=165.2
Q ss_pred CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219 (496)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (496)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 36899999999998 6777665 78999999999988 4665 5688999999999887 4555 6788889999
Q ss_pred CCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878 220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV 299 (496)
Q Consensus 220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 299 (496)
++|+++++|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++. |. .+++|+.|++++|.+++ +
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence 8888888776 45677777777777664 3432 35566666666665532 21 22445555555555543 2
Q ss_pred CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL 379 (496)
Q Consensus 300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 379 (496)
| ..+++|+.| ++++|.+++ +|. ..++|+.|++++|.++ .+|.. ++
T Consensus 177 ~---~~~~~L~~L------------------------~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~ 221 (622)
T 3g06_A 177 P---MLPSGLQEL------------------------SVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PS 221 (622)
T ss_dssp C---CCCTTCCEE------------------------ECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CT
T ss_pred c---ccCCCCcEE------------------------ECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CC
Confidence 2 223444444 444444442 222 1244555555555554 23321 24
Q ss_pred CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878 380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL 459 (496)
Q Consensus 380 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L 459 (496)
+|++|++++|++++ +| ..+++|++|++++|+++ .+|. .+++|+.| +|++|+++ .+|..+.++++|++|+|
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L-~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL-SVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE-ECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE-eCCCCCCC-cCCHHHhhccccCEEEe
Confidence 55556666665553 33 23455666666666665 3443 34556666 66666666 55666666666666666
Q ss_pred ccCcCCcccchhhhcC
Q 035878 460 SHNNLSGEIPASLSSM 475 (496)
Q Consensus 460 s~N~l~~~~p~~l~~l 475 (496)
++|++++.+|..+..+
T Consensus 292 ~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 292 EGNPLSERTLQALREI 307 (622)
T ss_dssp CSCCCCHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhc
Confidence 6666666666655443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.8e-31 Score=259.26 Aligned_cols=254 Identities=21% Similarity=0.208 Sum_probs=136.4
Q ss_pred CCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCccc-CCCCcccC-------CCCCCcEEEccCCCCCCcccccc
Q 035878 208 IGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFS-GPIPTSLK-------SCSSLYRVRLESNELTGDLEQDF 279 (496)
Q Consensus 208 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~~~~ 279 (496)
++..++|++|++++|.+ .+|..+... ++.|++++|+++ +.+|..+. ++++|++|++++|++++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34456677777777777 666555433 666666666662 33444333 45555555555555555444443
Q ss_pred --CCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCC
Q 035878 280 --GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTEL 357 (496)
Q Consensus 280 --~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 357 (496)
..+++|++|++++|.+++. |..+..+. ...+++|++|++++|++++..|..++.+++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4455555555555555443 33333330 0001455555555555554444455555555
Q ss_pred CEEeccCCcCccc--cchhh--cCCCCCCEEEccCCcCCCC--Ch-hhhhCCCCCCEEeccCccCCccCC-hhccCCccc
Q 035878 358 STLSLNGNDISGP--IPEEI--GALLNLDSLDLSMNRLSGP--IP-KQIGELRDLRSLSLSQNNLNGTIP-FQIGNLVGL 429 (496)
Q Consensus 358 ~~L~Ls~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~--~~-~~l~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L 429 (496)
++|++++|++.+. .+..+ ..+++|++|++++|++++. ++ ..+..+++|++|++++|++++.+| ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 5555555554433 12222 4555555555555555521 11 223455666666666666665553 334445666
Q ss_pred cccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878 430 QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490 (496)
Q Consensus 430 ~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 490 (496)
++| ++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 256 ~~L-~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 256 NSL-NLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEE-ECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CEE-ECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 666 66666666 5555554 5666777777777654 44 6666777777777777665
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.3e-31 Score=257.26 Aligned_cols=251 Identities=20% Similarity=0.226 Sum_probs=171.3
Q ss_pred cccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc--cccccc-------CCCCCcEEecCCCcccCCCCc
Q 035878 183 SLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG--LPPQVC-------KGGKLINFTASFNHFSGPIPT 253 (496)
Q Consensus 183 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--lp~~l~-------~l~~L~~L~l~~n~l~~~~p~ 253 (496)
.++..++|++|++++|.+ .+|..+... |++|++++|.+.. +|..+. .+++|++|++++|++++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 355678999999999999 677766544 9999999999965 777665 789999999999999999998
Q ss_pred cc--CCCCCCcEEEccCCCCCCccccccCCC-----CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcc
Q 035878 254 SL--KSCSSLYRVRLESNELTGDLEQDFGIY-----PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE 326 (496)
Q Consensus 254 ~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 326 (496)
.+ ..+++|++|++++|++++. |..++.+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+..+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-- 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence 76 8999999999999999987 6666554 566666666666655555555555555555555555443210
Q ss_pred cCCCCCCCEEEccCCcCccccchhh--cCCCCCCEEeccCCcCcc--ccc-hhhcCCCCCCEEEccCCcCCCCCh-hhhh
Q 035878 327 IGSLSQLVVLDLSSNQLSGEIPAQI--GNLTELSTLSLNGNDISG--PIP-EEIGALLNLDSLDLSMNRLSGPIP-KQIG 400 (496)
Q Consensus 327 l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~ 400 (496)
.+..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..| ..+.
T Consensus 191 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 191 --------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp --------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred --------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 12222 445555555555555542 111 223345566666666666665443 3344
Q ss_pred CCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 401 ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 401 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
.+++|++|++++|+++ .+|..+. ++|++| ++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L-~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVL-DLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEE-ECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEE-ECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5667777777777776 6666555 677777 7777777754 55 7777777777887777764
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.1e-27 Score=253.26 Aligned_cols=263 Identities=27% Similarity=0.319 Sum_probs=200.6
Q ss_pred CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878 164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS 243 (496)
Q Consensus 164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~ 243 (496)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++++|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 35889999999988 6777665 78899999988887 4555 46788888888888877765 44556666666
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccC
Q 035878 244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI 323 (496)
Q Consensus 244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 323 (496)
+|++++. |. . +++|++|++++|.+++ +|.. +++|++|++++|++++ +
T Consensus 110 ~N~l~~l-~~---~------------------------l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l 156 (622)
T 3g06_A 110 SNPLTHL-PA---L------------------------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-L 156 (622)
T ss_dssp SCCCCCC-CC---C------------------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---C------------------------CCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-c
Confidence 6655532 22 2 3455555555555553 2322 3667777777777764 3
Q ss_pred CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCC
Q 035878 324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELR 403 (496)
Q Consensus 324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~ 403 (496)
|. ..++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|. .++
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~ 221 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPS 221 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCT
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCC
Confidence 32 34678889999998884 55 457899999999999985 5543 478999999999999 4554 358
Q ss_pred CCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeC
Q 035878 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNL 483 (496)
Q Consensus 404 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 483 (496)
+|++|++++|++++ +| ..+++|+.| ++++|+++ .+|. .+++|++|+|++|+++ .+|..|..+++|+.|++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L-~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKEL-MVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEE-ECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEE-ECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 89999999999985 66 456889999 99999999 5676 6789999999999999 78999999999999999
Q ss_pred cCCCCcccCCC
Q 035878 484 SYNNLEGPLPD 494 (496)
Q Consensus 484 s~N~l~g~ip~ 494 (496)
++|+++|.+|.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 99999987763
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.7e-30 Score=251.90 Aligned_cols=267 Identities=21% Similarity=0.182 Sum_probs=200.3
Q ss_pred CCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCC
Q 035878 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFN 245 (496)
Q Consensus 166 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n 245 (496)
++..+++.+.+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++++++ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 4455666666654444445566677778887777776666777777777777777777766443 444555555555555
Q ss_pred cccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCc
Q 035878 246 HFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPA 325 (496)
Q Consensus 246 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 325 (496)
++++ .. ..++|++|++++|.+++..+. .+++|++|++++|++++..+.
T Consensus 91 ~l~~------------------------l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 91 YVQE------------------------LL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp EEEE------------------------EE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred cccc------------------------cc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence 4442 11 125666666666666654433 246788888888888877777
Q ss_pred ccCCCCCCCEEEccCCcCccccchhh-cCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCC
Q 035878 326 EIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRD 404 (496)
Q Consensus 326 ~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 404 (496)
.++.+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++ +|..+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCc
Confidence 78888999999999999987766666 4789999999999999865 32 3358999999999999995 4555899999
Q ss_pred CCEEeccCccCCccCChhccCCccccccccccCCcCC-ccchhhhcCCCCCCEEEcccC-cCCcccch
Q 035878 405 LRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT-GEIPAQLEKLTSLQSMNLSHN-NLSGEIPA 470 (496)
Q Consensus 405 L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~ 470 (496)
|++|++++|+++ .+|..+..+++|+.+ ++++|.++ +.+|..+..+++|++|++++| .++|..|.
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L-~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHF-DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEE-ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEE-EccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999999999998 678889999999999 99999999 788999999999999999954 45655544
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=2.9e-31 Score=282.07 Aligned_cols=209 Identities=16% Similarity=0.164 Sum_probs=143.8
Q ss_pred ccCCCCCccEEEcccCcccccCC-cCcCCCCCCCEEEccCCccccc-CCcccCCCCCCCEEEccC---------CcCccc
Q 035878 278 DFGIYPNLTYIDLSYNRLQGEVS-PKWGKCQKLTLLGLAGNSIGGK-IPAEIGSLSQLVVLDLSS---------NQLSGE 346 (496)
Q Consensus 278 ~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~~ 346 (496)
.+..+++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|++++ +.+++.
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 33456788888888888664322 22457788888888877 4322 222233477888888833 455543
Q ss_pred cchhh-cCCCCCCEEeccCCcCccccchhhc-CCCCCCEEEcc--C----CcCCCC-----ChhhhhCCCCCCEEeccCc
Q 035878 347 IPAQI-GNLTELSTLSLNGNDISGPIPEEIG-ALLNLDSLDLS--M----NRLSGP-----IPKQIGELRDLRSLSLSQN 413 (496)
Q Consensus 347 ~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~-----~~~~l~~~~~L~~L~Ls~n 413 (496)
....+ ..+++|++|.+..|.+++..+..+. .+++|++|+++ + +.+++. ++..+..+++|++|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 33333 3478888888888888766555554 47888999888 4 455521 223366788899999977
Q ss_pred cCCccCChhccC-CccccccccccCCcCCccchhhh-cCCCCCCEEEcccCcCCcccch-hhhcCCCCCEEeCcCCCCc
Q 035878 414 NLNGTIPFQIGN-LVGLQDLLDLSYNSLTGEIPAQL-EKLTSLQSMNLSHNNLSGEIPA-SLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 414 ~l~~~~p~~~~~-l~~L~~LL~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 489 (496)
.+++..+..++. +++|++| ++++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|++|++++|+++
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L-~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEML-SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEE-EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cccHHHHHHHHHhchhccEe-eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 666665556655 7888888 999998877655555 6788899999999998655444 3455788999999999874
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.2e-29 Score=256.27 Aligned_cols=234 Identities=21% Similarity=0.174 Sum_probs=157.3
Q ss_pred CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEcc
Q 035878 236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLA 315 (496)
Q Consensus 236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 315 (496)
+|+.|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 56666666666666555666666666666666666665444 6666777777777776664322 2667777777
Q ss_pred CCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhc-CCCCCCEEEccCCcCCCC
Q 035878 316 GNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG-ALLNLDSLDLSMNRLSGP 394 (496)
Q Consensus 316 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ 394 (496)
+|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7777655443 346677777777777766666677777777777777777766666665 567777777777777754
Q ss_pred ChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC-cccchhhh
Q 035878 395 IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS-GEIPASLS 473 (496)
Q Consensus 395 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~ 473 (496)
|. ...+++|++|+|++|.+++. |..+..+++|+.| ++++|++++ +|..+..+++|++|++++|+++ +.+|..+.
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L-~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWI-SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEE-ECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred -cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEE-EecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 22 33467777777777777753 3346777777777 777777774 6666777777777777777776 56667777
Q ss_pred cCCCCCEEeCc
Q 035878 474 SMLSLVAVNLS 484 (496)
Q Consensus 474 ~l~~L~~L~ls 484 (496)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 77777766665
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-28 Score=254.81 Aligned_cols=235 Identities=23% Similarity=0.229 Sum_probs=121.7
Q ss_pred CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878 164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS 243 (496)
Q Consensus 164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~ 243 (496)
++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.++++|.. ++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 355555555555555555555555555555555555554333 55556666666666655554422 455555555
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcC-CCCCCCEEEccCCccccc
Q 035878 244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWG-KCQKLTLLGLAGNSIGGK 322 (496)
Q Consensus 244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~ 322 (496)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 5555443322 234555555555555555555555555555555555555554444443 455555555555555543
Q ss_pred CCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC-CCChhhhhC
Q 035878 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS-GPIPKQIGE 401 (496)
Q Consensus 323 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~ 401 (496)
. ....+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.+. +.+|..+..
T Consensus 185 ~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 K--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 1 122355555555555555532 2234555555555555555553 4444555555555555555554 334444444
Q ss_pred CCCCCEEecc
Q 035878 402 LRDLRSLSLS 411 (496)
Q Consensus 402 ~~~L~~L~Ls 411 (496)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 4444444443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=7.1e-27 Score=223.17 Aligned_cols=217 Identities=25% Similarity=0.318 Sum_probs=129.7
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCC
Q 035878 63 PSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGL 142 (496)
Q Consensus 63 ~~~C~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L 142 (496)
.++|.|.|+.|+..+.++.+++++++++ .+|. .+. +.++ +|++++|.+++ +|... |.++++|
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~-~~~--~~l~-----~L~l~~n~l~~-~~~~~--------~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPS-NIP--ADTK-----KLDLQSNKLSS-LPSKA--------FHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCS-CCC--TTCS-----EEECCSSCCSC-CCTTS--------SSSCTTC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCC-CCC--CCCC-----EEECcCCCCCe-eCHHH--------hcCCCCC
Confidence 4789999999976667778888888887 3443 222 3344 56666776663 33221 5666666
Q ss_pred cEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCC
Q 035878 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFIN 222 (496)
Q Consensus 143 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (496)
++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 67777666666554555566666666666666666555555566666666666666666555555666666666666666
Q ss_pred CCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcC
Q 035878 223 KLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK 302 (496)
Q Consensus 223 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 302 (496)
.++++|.. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..
T Consensus 144 ~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 144 ELQSLPKG-----------------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp CCCCCCTT-----------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCCccCHh-----------------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 66554433 3444444555555555554444444445555555555555555444444
Q ss_pred cCCCCCCCEEEccCCccc
Q 035878 303 WGKCQKLTLLGLAGNSIG 320 (496)
Q Consensus 303 ~~~~~~L~~L~L~~n~l~ 320 (496)
+..+++|+.|++++|.+.
T Consensus 201 ~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hccccCCCEEEecCCCee
Confidence 555555555555555544
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.2e-26 Score=222.34 Aligned_cols=224 Identities=28% Similarity=0.290 Sum_probs=151.5
Q ss_pred EecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcc
Q 035878 240 FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSI 319 (496)
Q Consensus 240 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 319 (496)
.+..+..++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 3454443 4677778877777766666777777777777777777766666677777777777777777
Q ss_pred cccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc-cchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878 320 GGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP-IPEEIGALLNLDSLDLSMNRLSGPIPKQ 398 (496)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 398 (496)
++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 776667777777777777777777765555677777777777777777653 4677777777777777777777665556
Q ss_pred hhCCCCCC----EEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878 399 IGELRDLR----SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI 468 (496)
Q Consensus 399 l~~~~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 468 (496)
+..+++|+ +|++++|.+++..+.. ....+|++| ++++|++++..+..+.++++|++|++++|++++..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKEL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEE-ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred hhhhhhccccceeeecCCCcccccCccc-cCCCcccEE-ECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 66555555 6777777776443333 333466666 77777777555555666777777777777776544
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.7e-30 Score=276.07 Aligned_cols=347 Identities=14% Similarity=0.091 Sum_probs=228.0
Q ss_pred CCCCCcEEEccCCcCcccCCcCC----CCCCCCCEEEccCCC--Cccc-CCccccCCCCCceEecccCcCCcccCccCCC
Q 035878 138 GLLGLKNFLLQDNMLSGRIPEEI----GNCKLLTLLALDGNF--LSGP-IPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210 (496)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 210 (496)
++++|++|++++|.+++..+..+ ..+++|++|++++|. ++.. ++..+..+++|++|++++|...+.++..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45666666666666554332222 245566666666654 2211 1111234566666666665222225555555
Q ss_pred CCCCCEEECCCCC-------CccccccccCCCCCcEE-ecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCC
Q 035878 211 LSKLTDLHLFINK-------LSGLPPQVCKGGKLINF-TASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGI 281 (496)
Q Consensus 211 l~~L~~L~L~~n~-------l~~lp~~l~~l~~L~~L-~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~ 281 (496)
+++|++|+++.+. +.+++..+..+++|+.+ .+.... .+.++..+..+++|++|++++|.+++... ..+..
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~ 312 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhc
Confidence 6666666644332 23344455666666666 333222 12345555578999999999999775432 33568
Q ss_pred CCCccEEEcccCccccc-CCcCcCCCCCCCEEEccC---------CcccccCCcccC-CCCCCCEEEccCCcCccccchh
Q 035878 282 YPNLTYIDLSYNRLQGE-VSPKWGKCQKLTLLGLAG---------NSIGGKIPAEIG-SLSQLVVLDLSSNQLSGEIPAQ 350 (496)
Q Consensus 282 l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~---------n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~ 350 (496)
+++|++|++++| +.+. ++.....+++|++|++.+ +.+++.....+. .+++|++|.+..|.+++..+..
T Consensus 313 ~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 313 CPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp CTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred CCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 899999999988 4422 222234588999999943 455543333333 4889999999999998766666
Q ss_pred hc-CCCCCCEEecc--C----CcCccc-----cchhhcCCCCCCEEEccCCcCCCCChhhhhC-CCCCCEEeccCccCCc
Q 035878 351 IG-NLTELSTLSLN--G----NDISGP-----IPEEIGALLNLDSLDLSMNRLSGPIPKQIGE-LRDLRSLSLSQNNLNG 417 (496)
Q Consensus 351 l~-~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-~~~L~~L~Ls~n~l~~ 417 (496)
+. .+++|++|+++ + +.+++. ++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 54 58999999999 4 556521 223367789999999987 677665556655 8999999999999987
Q ss_pred cCChhc-cCCccccccccccCCcCCccchh-hhcCCCCCCEEEcccCcCCcccchhh-hcCCCCCEEeCcCCCC
Q 035878 418 TIPFQI-GNLVGLQDLLDLSYNSLTGEIPA-QLEKLTSLQSMNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNL 488 (496)
Q Consensus 418 ~~p~~~-~~l~~L~~LL~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l 488 (496)
..+..+ ..+++|++| ++++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus 471 ~~~~~l~~~~~~L~~L-~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKL-EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHHHHHHCTTCCEE-EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHHHhcCCCcCEE-ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 666555 668999999 9999999765444 44568999999999999975545555 5678887776666543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7.8e-26 Score=216.61 Aligned_cols=222 Identities=22% Similarity=0.216 Sum_probs=120.0
Q ss_pred EECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc
Q 035878 217 LHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ 296 (496)
Q Consensus 217 L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 296 (496)
.+..+..++.+|..+. +++++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3444444555554432 34555666655555544445555555666666665555544445555555666666666555
Q ss_pred ccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccc-cchhhcCCCCCCEEeccCCcCccccchhh
Q 035878 297 GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGE-IPAQIGNLTELSTLSLNGNDISGPIPEEI 375 (496)
Q Consensus 297 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 375 (496)
+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 55555555555666666665555554444555555666666666555542 35555555566666666665555444444
Q ss_pred cCCCCCC----EEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878 376 GALLNLD----SLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442 (496)
Q Consensus 376 ~~l~~L~----~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~ 442 (496)
..+++|+ +|++++|++++..+..+ ...+|++|++++|++++..+..+..+++|+++ ++++|.+++
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~N~~~c 238 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKI-WLHTNPWDC 238 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE-ECCSSCBCC
T ss_pred hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEE-EccCCcccc
Confidence 4444444 55556665554333322 22355556666665554444444555555555 566655554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.2e-25 Score=210.84 Aligned_cols=204 Identities=24% Similarity=0.275 Sum_probs=159.9
Q ss_pred CCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878 260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339 (496)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 339 (496)
..+.++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46788888888874 454443 678888888888887766678888888888888888886666667788888888888
Q ss_pred CCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccC
Q 035878 340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI 419 (496)
Q Consensus 340 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 419 (496)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88888666666778888888888888888777777788888888888888888666666778888888888888888666
Q ss_pred ChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878 420 PFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 420 p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
+..+..+++|++| ++++|++++..+..+..+++|++|++++|++...
T Consensus 174 ~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 174 EGAFDKLTELKTL-KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hhHhccCCCcCEE-ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6667778888888 8888888866666677788888888888887543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=9.6e-26 Score=215.51 Aligned_cols=226 Identities=24% Similarity=0.252 Sum_probs=178.2
Q ss_pred cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317 (496)
Q Consensus 238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (496)
..+.+..+.+... .....+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 3444445544433 2345678888999998888743 3477788899999998888763 46788888888888888
Q ss_pred cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChh
Q 035878 318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397 (496)
Q Consensus 318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 397 (496)
.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 88877777788888888888888888877777788888888888888888877777778888888888888888877777
Q ss_pred hhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCC
Q 035878 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS 477 (496)
Q Consensus 398 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 477 (496)
.+..+++|++|++++|++++..|..+..+++|+++ ++++|.+.+. +++|++|+++.|+++|.+|..++.+..
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI-WLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE-ECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE-EccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 77888888888888888887777778888888888 8888888754 446788888888888888888776654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=4.8e-25 Score=210.68 Aligned_cols=208 Identities=23% Similarity=0.201 Sum_probs=109.7
Q ss_pred CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEE
Q 035878 210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID 289 (496)
Q Consensus 210 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 289 (496)
.+++|++|++++|.++.++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3455555555555544433 233344444444444444431 2344555555555555555554444455555555555
Q ss_pred cccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcc
Q 035878 290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG 369 (496)
Q Consensus 290 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (496)
+++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 55555555444445555555555555555555444445555555555555555554444445555555555555555555
Q ss_pred ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCc
Q 035878 370 PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLV 427 (496)
Q Consensus 370 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 427 (496)
..+..+..+++|++|++++|.+.+. ++.|++++++.|.++|.+|.+++.+.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 5444455555555555555555432 33455555555555555555555443
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.93 E-value=4.8e-27 Score=236.24 Aligned_cols=244 Identities=16% Similarity=0.216 Sum_probs=112.7
Q ss_pred ccccccCCCCCcEEecCCCcccCCCC----cccCCCCCCcEEEccCCCC---CCcccccc-------CCCCCccEEEccc
Q 035878 227 LPPQVCKGGKLINFTASFNHFSGPIP----TSLKSCSSLYRVRLESNEL---TGDLEQDF-------GIYPNLTYIDLSY 292 (496)
Q Consensus 227 lp~~l~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~ls~ 292 (496)
++..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+ ++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55555556666666666666654322 2344556666666665432 23333322 3445555555555
Q ss_pred Ccccc----cCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCC---------CCCCE
Q 035878 293 NRLQG----EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNL---------TELST 359 (496)
Q Consensus 293 n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l---------~~L~~ 359 (496)
|.+++ .++..+..+++|++|++++|.+++..+..+.. .+..+ ++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcE
Confidence 55544 23334444445555555555443222221111 11112 44555
Q ss_pred EeccCCcCc-cccc---hhhcCCCCCCEEEccCCcCCC-----CChhhhhCCCCCCEEeccCccCC----ccCChhccCC
Q 035878 360 LSLNGNDIS-GPIP---EEIGALLNLDSLDLSMNRLSG-----PIPKQIGELRDLRSLSLSQNNLN----GTIPFQIGNL 426 (496)
Q Consensus 360 L~Ls~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~l~~~~~L~~L~Ls~n~l~----~~~p~~~~~l 426 (496)
|++++|+++ +.++ ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 555555444 2222 233344455555555554441 12223444455555555555543 3344444455
Q ss_pred ccccccccccCCcCCcc----chhhhcC--CCCCCEEEcccCcCCc----ccchhh-hcCCCCCEEeCcCCCCccc
Q 035878 427 VGLQDLLDLSYNSLTGE----IPAQLEK--LTSLQSMNLSHNNLSG----EIPASL-SSMLSLVAVNLSYNNLEGP 491 (496)
Q Consensus 427 ~~L~~LL~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~ 491 (496)
++|++| +|++|++++. ++..+.. +++|++|+|++|++++ .+|..+ .++++|++|++++|++++.
T Consensus 244 ~~L~~L-~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 244 PNLREL-GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp TTCCEE-ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCcCEE-ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 555555 5555555443 3344422 4555555555555554 244444 3345555555555555543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.4e-24 Score=209.29 Aligned_cols=204 Identities=27% Similarity=0.226 Sum_probs=156.1
Q ss_pred cCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 035878 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLV 334 (496)
Q Consensus 255 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 334 (496)
+.+++++++++++++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 5667788888888888874 444332 678888888888887777778888888888888888875433 26778888
Q ss_pred EEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCcc
Q 035878 335 VLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNN 414 (496)
Q Consensus 335 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~ 414 (496)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888887 567777778888888888888886666777888888888888888887666667778888888888888
Q ss_pred CCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 415 LNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 415 l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
+++..+..+..+++|++| +|++|+++ .+|..+..+.+|++|+|++|++..
T Consensus 160 l~~l~~~~~~~l~~L~~L-~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTL-LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEE-ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEE-ECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 875555556777888888 88888887 677777777788888888887753
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=3.8e-24 Score=206.25 Aligned_cols=202 Identities=23% Similarity=0.189 Sum_probs=118.2
Q ss_pred CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (496)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456677777777777776 4444443 5677777777777766667777777777777777777643322 5677777
Q ss_pred EEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878 216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL 295 (496)
Q Consensus 216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 295 (496)
+|++++|+++.+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 77777777776666555566666666666666554445555555555555555555544444444455555555555555
Q ss_pred cccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 035878 296 QGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL 343 (496)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 343 (496)
++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 4433333444444444444444444 3333333444444444444443
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.5e-26 Score=230.54 Aligned_cols=255 Identities=19% Similarity=0.236 Sum_probs=179.9
Q ss_pred EEECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCC----cccCCCC-CCcEEEccCCCCCCccccccCCC-----CC
Q 035878 216 DLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIP----TSLKSCS-SLYRVRLESNELTGDLEQDFGIY-----PN 284 (496)
Q Consensus 216 ~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 284 (496)
+++++.|.+++ +|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888 56555555668888888888887665 6677777 88888888888887766666553 88
Q ss_pred ccEEEcccCcccccCCcCc----CCC-CCCCEEEccCCcccccCCccc----CC-CCCCCEEEccCCcCccc----cchh
Q 035878 285 LTYIDLSYNRLQGEVSPKW----GKC-QKLTLLGLAGNSIGGKIPAEI----GS-LSQLVVLDLSSNQLSGE----IPAQ 350 (496)
Q Consensus 285 L~~L~ls~n~l~~~~~~~~----~~~-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~l~~~----~~~~ 350 (496)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888876655533 333 788888888888876655443 33 35888888888888753 3344
Q ss_pred hcCCC-CCCEEeccCCcCccccchhhc----CC-CCCCEEEccCCcCCCC----ChhhhhC-CCCCCEEeccCccCCccC
Q 035878 351 IGNLT-ELSTLSLNGNDISGPIPEEIG----AL-LNLDSLDLSMNRLSGP----IPKQIGE-LRDLRSLSLSQNNLNGTI 419 (496)
Q Consensus 351 l~~l~-~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~~~~l~~-~~~L~~L~Ls~n~l~~~~ 419 (496)
+..++ +|++|++++|++++..+..+. .+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 888888888888766655443 34 5888888888888753 4445554 358888888888887654
Q ss_pred C----hhccCCccccccccccCCcCCcc-------chhhhcCCCCCCEEEcccCcCCcccchh
Q 035878 420 P----FQIGNLVGLQDLLDLSYNSLTGE-------IPAQLEKLTSLQSMNLSHNNLSGEIPAS 471 (496)
Q Consensus 420 p----~~~~~l~~L~~LL~Ls~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 471 (496)
+ ..+..+++|++| ++++|.+.+. ++..+.++++|++||+++|++.+..+..
T Consensus 242 ~~~l~~~~~~l~~L~~L-~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTV-YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHHHTTTTTTTCSEE-EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHhcCCCccEE-EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 4 234566778888 8888875433 2345667777888888888887664443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=3.6e-26 Score=225.19 Aligned_cols=231 Identities=19% Similarity=0.197 Sum_probs=134.4
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc-CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 035878 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE-VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLD 337 (496)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 337 (496)
++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444555555544444333 23455555555555555543 444555566666666666666555555566666666666
Q ss_pred ccCC-cCccc-cchhhcCCCCCCEEeccCC-cCccc-cchhhcCCC-CCCEEEccCC--cCC-CCChhhhhCCCCCCEEe
Q 035878 338 LSSN-QLSGE-IPAQIGNLTELSTLSLNGN-DISGP-IPEEIGALL-NLDSLDLSMN--RLS-GPIPKQIGELRDLRSLS 409 (496)
Q Consensus 338 Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~~~~L~~L~ 409 (496)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 45542 4555666666777777766 66543 455566666 6777777776 344 34555566667777777
Q ss_pred ccCcc-CCccCChhccCCccccccccccCCc-CCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878 410 LSQNN-LNGTIPFQIGNLVGLQDLLDLSYNS-LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487 (496)
Q Consensus 410 Ls~n~-l~~~~p~~~~~l~~L~~LL~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 487 (496)
+++|. +++..+..+..+++|++| ++++|. ++......+.++++|++|++++| ++...-..+. ..+..|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHL-SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEE-ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEe-eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 77776 555666666667777777 777774 22222234666777777777777 4322212221 235555677777
Q ss_pred CcccCCC
Q 035878 488 LEGPLPD 494 (496)
Q Consensus 488 l~g~ip~ 494 (496)
++|.+|.
T Consensus 305 l~~~~~~ 311 (336)
T 2ast_B 305 FTTIARP 311 (336)
T ss_dssp SCCTTCS
T ss_pred CccccCC
Confidence 7777765
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=4.1e-27 Score=236.72 Aligned_cols=255 Identities=23% Similarity=0.239 Sum_probs=160.9
Q ss_pred ccCccCCCCCCCCEEECCCCCCcc-----ccccccCCCCCcEEecCCC---cccCCCCccc-------CCCCCCcEEEcc
Q 035878 203 EIPANIGTLSKLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFN---HFSGPIPTSL-------KSCSSLYRVRLE 267 (496)
Q Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 267 (496)
.++..+..+++|++|++++|.++. ++..+..+++|++|++++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456677789999999999999987 4455778999999999996 5556666555 789999999999
Q ss_pred CCCCCC----ccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 035878 268 SNELTG----DLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL 343 (496)
Q Consensus 268 ~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 343 (496)
+|.+++ .++..+..+++|++|++++|.+++..+..+... +.. +..+++.+ ..++|++|++++|++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~--l~~~~~~~-------~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE--LAVNKKAK-------NAPPLRSIICGRNRL 171 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH--HHHHHHHH-------TCCCCCEEECCSSCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHH--Hhhhhhcc-------cCCCCcEEECCCCCC
Confidence 999998 467788889999999999999975444333221 000 00001110 003444444444444
Q ss_pred c-cccc---hhhcCCCCCCEEeccCCcCcc-----ccchhhcCCCCCCEEEccCCcCC----CCChhhhhCCCCCCEEec
Q 035878 344 S-GEIP---AQIGNLTELSTLSLNGNDISG-----PIPEEIGALLNLDSLDLSMNRLS----GPIPKQIGELRDLRSLSL 410 (496)
Q Consensus 344 ~-~~~~---~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~~~~L~~L~L 410 (496)
+ +.++ ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 3 2222 234445555555555555541 12224455555666666666553 345555556666666666
Q ss_pred cCccCCcc----CChhc--cCCccccccccccCCcCCc----cchhhh-cCCCCCCEEEcccCcCCcccc
Q 035878 411 SQNNLNGT----IPFQI--GNLVGLQDLLDLSYNSLTG----EIPAQL-EKLTSLQSMNLSHNNLSGEIP 469 (496)
Q Consensus 411 s~n~l~~~----~p~~~--~~l~~L~~LL~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 469 (496)
++|.+++. +|..+ +.+++|++| +|++|++++ .+|..+ .++++|++|++++|++++..+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L-~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTL-RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEE-ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEE-ECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 66666544 34444 236666666 777777665 366666 556777777777777776653
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=2e-26 Score=229.56 Aligned_cols=253 Identities=18% Similarity=0.167 Sum_probs=140.2
Q ss_pred EEEccCCCCcccCCccccCCCCCceEecccCcCCcccC----ccCCCCC-CCCEEECCCCCCccc-cccccCC-----CC
Q 035878 168 LLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIP----ANIGTLS-KLTDLHLFINKLSGL-PPQVCKG-----GK 236 (496)
Q Consensus 168 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~l-p~~l~~l-----~~ 236 (496)
++++++|.+++.+|..+...++|++|++++|.+++..+ +.+..++ +|++|++++|++++. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888888777777778888888888876655 6666777 788888888888773 3333332 67
Q ss_pred CcEEecCCCcccCCCCccc----CCC-CCCcEEEccCCCCCCcccccc----CC-CCCccEEEcccCcccccCC----cC
Q 035878 237 LINFTASFNHFSGPIPTSL----KSC-SSLYRVRLESNELTGDLEQDF----GI-YPNLTYIDLSYNRLQGEVS----PK 302 (496)
Q Consensus 237 L~~L~l~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~ls~n~l~~~~~----~~ 302 (496)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 7777777777765554432 333 566666766666655444332 22 2466666666666653222 22
Q ss_pred cCCCC-CCCEEEccCCcccccCCccc----CCC-CCCCEEEccCCcCccc----cchhhcC-CCCCCEEeccCCcCcccc
Q 035878 303 WGKCQ-KLTLLGLAGNSIGGKIPAEI----GSL-SQLVVLDLSSNQLSGE----IPAQIGN-LTELSTLSLNGNDISGPI 371 (496)
Q Consensus 303 ~~~~~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~Ls~n~l~~~~ 371 (496)
+...+ +|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 22333 55666666665554443322 222 3555555555555531 2333333 235555555555555432
Q ss_pred c----hhhcCCCCCCEEEccCCcCCCCCh-------hhhhCCCCCCEEeccCccCCccCC
Q 035878 372 P----EEIGALLNLDSLDLSMNRLSGPIP-------KQIGELRDLRSLSLSQNNLNGTIP 420 (496)
Q Consensus 372 ~----~~~~~l~~L~~L~Ls~n~l~~~~~-------~~l~~~~~L~~L~Ls~n~l~~~~p 420 (496)
+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2 122334555555555555332222 123344445555555555544433
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=216.27 Aligned_cols=224 Identities=20% Similarity=0.210 Sum_probs=161.1
Q ss_pred CCcEEEccCCCCCCcccc---ccCCCCCccEEEcccCcccccCCcCc--CCCCCCCEEEccCCcccccCC----cccCCC
Q 035878 260 SLYRVRLESNELTGDLEQ---DFGIYPNLTYIDLSYNRLQGEVSPKW--GKCQKLTLLGLAGNSIGGKIP----AEIGSL 330 (496)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~----~~l~~l 330 (496)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355555555554321100 11123557777777777777777766 677777888888877776544 344567
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc--c--chhhcCCCCCCEEEccCCcCCCCChh----hhhCC
Q 035878 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP--I--PEEIGALLNLDSLDLSMNRLSGPIPK----QIGEL 402 (496)
Q Consensus 331 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~~~----~l~~~ 402 (496)
++|++|++++|.+++..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 7888888888888777777788888888888888887642 2 222357788888888888887 3333 25677
Q ss_pred CCCCEEeccCccCCccCChhccCC---ccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCC
Q 035878 403 RDLRSLSLSQNNLNGTIPFQIGNL---VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLV 479 (496)
Q Consensus 403 ~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 479 (496)
++|++|++++|++++.+|..+..+ ++|++| ++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L-~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL-NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE-ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEE-ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 888888998888888778777776 588888 99999988 6777664 7899999999999864 33 67788899
Q ss_pred EEeCcCCCCcc
Q 035878 480 AVNLSYNNLEG 490 (496)
Q Consensus 480 ~L~ls~N~l~g 490 (496)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998875
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=8.2e-26 Score=222.68 Aligned_cols=252 Identities=18% Similarity=0.241 Sum_probs=123.3
Q ss_pred CCEEEccCCCCcccCCccccCC--CCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878 166 LTLLALDGNFLSGPIPSSLGNL--SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS 243 (496)
Q Consensus 166 L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~ 243 (496)
++.++++++.+. +..+..+ +++++|++++|.+++..+. +..+++|++|++++|.+++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~----------------- 107 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV----------------- 107 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH-----------------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH-----------------
Confidence 566666666554 3334444 5566666666666544433 3345555555555555443
Q ss_pred CCcccCC-CCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccC-ccccc-CCcCcCCCCCCCEEEccCC-cc
Q 035878 244 FNHFSGP-IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYN-RLQGE-VSPKWGKCQKLTLLGLAGN-SI 319 (496)
Q Consensus 244 ~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l 319 (496)
. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+
T Consensus 108 ------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 108 ------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp ------HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred ------HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 2 2333334444444444444444444444444444555555444 33321 2333444455555555555 44
Q ss_pred ccc-CCcccCCCC-CCCEEEccCC--cCc-cccchhhcCCCCCCEEeccCCc-CccccchhhcCCCCCCEEEccCCc-CC
Q 035878 320 GGK-IPAEIGSLS-QLVVLDLSSN--QLS-GEIPAQIGNLTELSTLSLNGND-ISGPIPEEIGALLNLDSLDLSMNR-LS 392 (496)
Q Consensus 320 ~~~-~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 392 (496)
++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 432 333444555 5555555555 333 3344455556666666666665 444555555556666666666663 22
Q ss_pred CCChhhhhCCCCCCEEeccCccCCccCChhccCC-ccccccccccCCcCCccchhhhc
Q 035878 393 GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL-VGLQDLLDLSYNSLTGEIPAQLE 449 (496)
Q Consensus 393 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~LL~Ls~N~l~~~~p~~l~ 449 (496)
......+.++++|++|++++| ++.. .+..+ ..+..| ++++|++++..|..++
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L-~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHL-QINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTS-EESCCCSCCTTCSSCS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcce-EEecccCccccCCccc
Confidence 111123555566666666655 3221 11222 224444 5555555555554443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.7e-23 Score=196.04 Aligned_cols=205 Identities=24% Similarity=0.241 Sum_probs=164.1
Q ss_pred CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878 283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL 362 (496)
Q Consensus 283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 362 (496)
...++++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45788999999887 4565554 68999999999999888888999999999999999999887888899999999999
Q ss_pred cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878 363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442 (496)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~ 442 (496)
++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++| +|++|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL-SLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE-ECCCCcCCc
Confidence 9999997777788889999999999999997777778889999999999999987767678889999999 999999997
Q ss_pred cchhhhcCCCCCCEEEcccCcCCcc------cchhhhcCCCCCEEeCcCCCCcccC
Q 035878 443 EIPAQLEKLTSLQSMNLSHNNLSGE------IPASLSSMLSLVAVNLSYNNLEGPL 492 (496)
Q Consensus 443 ~~p~~l~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~~L~~L~ls~N~l~g~i 492 (496)
..+..+.++++|++|++++|++++. ++.++.. ...+..+.+++.+.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 224 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE-NSNKVKDGTGQNLHESP 224 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH-SGGGBCC-------CCG
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh-cccceeeccCcccccCC
Confidence 7777888999999999999999876 3333332 22234455566655443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.3e-23 Score=196.48 Aligned_cols=204 Identities=23% Similarity=0.246 Sum_probs=167.8
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL 338 (496)
Q Consensus 259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 338 (496)
...++++++++.++. +|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 356789999999884 455444 68999999999999988888999999999999999999988888999999999999
Q ss_pred cCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCcc
Q 035878 339 SSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT 418 (496)
Q Consensus 339 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 418 (496)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999977778889999999999999999977777788999999999999999977777899999999999999999987
Q ss_pred CChhccCCccccccccccCCcCCcc------chhhhcCCCCCCEEEcccCcCCcc
Q 035878 419 IPFQIGNLVGLQDLLDLSYNSLTGE------IPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 419 ~p~~~~~l~~L~~LL~Ls~N~l~~~------~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
.+..+..+++|+++ ++++|.+++. ++.++.. ...+..+..++.+.+.
T Consensus 171 ~~~~~~~l~~L~~L-~l~~N~~~c~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 223 (251)
T 3m19_A 171 PHGAFDRLGKLQTI-TLFGNQFDCSRCEILYLSQWIRE-NSNKVKDGTGQNLHES 223 (251)
T ss_dssp CTTTTTTCTTCCEE-ECCSCCBCTTSTTHHHHHHHHHH-SGGGBCC-------CC
T ss_pred CHHHHhCCCCCCEE-EeeCCceeCCccccHHHHHHHHh-cccceeeccCcccccC
Confidence 77789999999999 9999999876 3333332 1223345556666544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=5.2e-24 Score=207.48 Aligned_cols=199 Identities=24% Similarity=0.223 Sum_probs=129.4
Q ss_pred CcEEEccCCCCCCcccccc--CCCCCccEEEcccCcccccCC----cCcCCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 035878 261 LYRVRLESNELTGDLEQDF--GIYPNLTYIDLSYNRLQGEVS----PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLV 334 (496)
Q Consensus 261 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 334 (496)
|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444333 444445555555554443322 1233456666777777776666666667777777
Q ss_pred EEEccCCcCccc--cc--hhhcCCCCCCEEeccCCcCccccch----hhcCCCCCCEEEccCCcCCCCChhhhhCC---C
Q 035878 335 VLDLSSNQLSGE--IP--AQIGNLTELSTLSLNGNDISGPIPE----EIGALLNLDSLDLSMNRLSGPIPKQIGEL---R 403 (496)
Q Consensus 335 ~L~Ls~n~l~~~--~~--~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~---~ 403 (496)
+|++++|++.+. ++ ..+..+++|++|++++|+++. ++. .+..+++|++|++++|++++..|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 777777776542 21 223567778888888887762 222 24567788888888888887767666665 5
Q ss_pred CCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 404 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
+|++|++++|+++ .+|..+. ++|++| +|++|++++. |. +..+++|++|++++|+++.
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L-~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVL-DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCE-ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEE-ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8888888888888 6776664 788888 8999988853 43 6778889999999998874
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.4e-23 Score=196.38 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=153.5
Q ss_pred CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEccC-CcCccccchhhcCCCCCCEE
Q 035878 283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS-IGGKIPAEIGSLSQLVVLDLSS-NQLSGEIPAQIGNLTELSTL 360 (496)
Q Consensus 283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L 360 (496)
+++++|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467777777777776666677777888888888886 7766666777888888888887 88876656677888888888
Q ss_pred eccCCcCccccchhhcCCCCCC---EEEccCC-cCCCCChhhhhCCCCCC-EEeccCccCCccCChhccCCccccccccc
Q 035878 361 SLNGNDISGPIPEEIGALLNLD---SLDLSMN-RLSGPIPKQIGELRDLR-SLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435 (496)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L 435 (496)
++++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|+++ .+|......++|+++ ++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L-~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV-YL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE-EC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE-Ec
Confidence 888888875 555 77777777 8888888 88866666788888999 9999999888 565554444889888 99
Q ss_pred cCCc-CCccchhhhcCC-CCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878 436 SYNS-LTGEIPAQLEKL-TSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487 (496)
Q Consensus 436 s~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 487 (496)
++|+ +++..+..|.++ ++|++|++++|++++ +|.. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 9995 886667778888 899999999999985 4443 57788899988763
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3e-23 Score=194.17 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=89.3
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC-CcccCCccccCCCCCceEeccc-CcCCcccCccCCCCCCCCEEE
Q 035878 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF-LSGPIPSSLGNLSDLAVLAVAS-NQLSGEIPANIGTLSKLTDLH 218 (496)
Q Consensus 141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 218 (496)
+|++|++++|.+++..+..|+++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45566666666665555556666666666666664 5544444566666666666665 666654445556666666666
Q ss_pred CCCCCCccccccccCCCCCc---EEecCCC-cccCCCCcccCCCCCCc-EEEccCCCCCCccccccCCCCCccEEEcccC
Q 035878 219 LFINKLSGLPPQVCKGGKLI---NFTASFN-HFSGPIPTSLKSCSSLY-RVRLESNELTGDLEQDFGIYPNLTYIDLSYN 293 (496)
Q Consensus 219 L~~n~l~~lp~~l~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 293 (496)
+++|+++++|. +..+++|+ +|++++| .+++..+..+.++++|+ +|++++|+++...+..+.. ++|++|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 66666655554 43444443 4444444 44433333344444555 5555555444221112222 34444444444
Q ss_pred c-ccccCCcCcCCC-CCCCEEEccCCccc
Q 035878 294 R-LQGEVSPKWGKC-QKLTLLGLAGNSIG 320 (496)
Q Consensus 294 ~-l~~~~~~~~~~~-~~L~~L~L~~n~l~ 320 (496)
. +++..+..|..+ ++|++|++++|+++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc
Confidence 2 443333333333 44444444444443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=7.6e-23 Score=198.96 Aligned_cols=207 Identities=22% Similarity=0.341 Sum_probs=165.0
Q ss_pred ecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc
Q 035878 241 TASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320 (496)
Q Consensus 241 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (496)
.+..+.+++.+ ....+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 33444444322 244678899999999988753 3 57788999999999999886544 888999999999999988
Q ss_pred ccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhh
Q 035878 321 GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG 400 (496)
Q Consensus 321 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 400 (496)
+. ..+..+++|++|++++|.+++. +. +..+++|++|++++|++++..+ +..+++|++|++++|++++. +. +.
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~ 170 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LA 170 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hc
Confidence 54 3688899999999999998854 33 8889999999999999986543 78889999999999999854 33 88
Q ss_pred CCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 401 ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 401 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
.+++|++|++++|++++..+ +..+++|++| ++++|++++..+ +..+++|++|++++|++++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L-~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEV-HLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEE-ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEE-EccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 88999999999999885443 7888899998 999999986543 7888999999999999875
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.3e-22 Score=195.57 Aligned_cols=193 Identities=24% Similarity=0.352 Sum_probs=101.3
Q ss_pred cCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEE
Q 035878 185 GNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRV 264 (496)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 264 (496)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+++++. +..+++|++|++++|++++. ..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 345666666666666653 33 35556666666666666665554 55555555555555555432 234444455555
Q ss_pred EccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc
Q 035878 265 RLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS 344 (496)
Q Consensus 265 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 344 (496)
++++|.+++.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~~~~--------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQITDVT--------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSCCCCCG--------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 55555444321 14444455555555555443222 445555555555555555
Q ss_pred cccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878 345 GEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416 (496)
Q Consensus 345 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 416 (496)
+..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 3222 5555555555555555553322 4555556666666666553322 555566666666666554
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=9.2e-22 Score=205.56 Aligned_cols=187 Identities=25% Similarity=0.368 Sum_probs=105.8
Q ss_pred CCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878 260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339 (496)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 339 (496)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44455555554443 33322 144555555555554 333 234555555555555554 443 333 56666666
Q ss_pred CCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccC
Q 035878 340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI 419 (496)
Q Consensus 340 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 419 (496)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|++|+|++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666654 343 45566666666666654 443 34566666666666664 444 43 56666666666666 55
Q ss_pred ChhccCCccc-------cccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcC
Q 035878 420 PFQIGNLVGL-------QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSM 475 (496)
Q Consensus 420 p~~~~~l~~L-------~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 475 (496)
|. +.. +| +.| +|++|+|+ .+|..+..+++|++|+|++|++++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L-~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFF-RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEE-ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEE-ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 54 433 45 666 77777777 566666667777777777777777777766654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.3e-21 Score=177.36 Aligned_cols=175 Identities=25% Similarity=0.273 Sum_probs=99.9
Q ss_pred CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878 283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL 362 (496)
Q Consensus 283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 362 (496)
+++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555555555555444444555556666666666655444444555666666666666665444444556666666666
Q ss_pred cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878 363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442 (496)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~ 442 (496)
++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .++.++++ +++.|+++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L-~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL-SEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHH-HHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHH-HHHHHhCCc
Confidence 6666665444455566666666666666665544455666666666666665543 33455555 666666666
Q ss_pred cchhhhcCCCCCCEEEcccCcCCcccc
Q 035878 443 EIPAQLEKLTSLQSMNLSHNNLSGEIP 469 (496)
Q Consensus 443 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p 469 (496)
.+|..++.++. ++..|...|..+
T Consensus 180 ~ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 180 VVRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp TBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred eeeccCccccC----CccccccCCCcc
Confidence 66666655443 344444444333
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=2.2e-21 Score=192.23 Aligned_cols=239 Identities=21% Similarity=0.222 Sum_probs=161.2
Q ss_pred ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccc-ccCCCCCcEEecCCCcccCCCC-cccCCCCCCcE-EEcc
Q 035878 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ-VCKGGKLINFTASFNHFSGPIP-TSLKSCSSLYR-VRLE 267 (496)
Q Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L~L~ 267 (496)
++++.++++++ .+|..+ .+++++|++++|+++.+|+. +..+++|++|++++|++.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888887 677665 36788888888888888764 5678888888888888766555 35677777665 5556
Q ss_pred CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccC-CcccccCCcccCCCC-CCCEEEccCCcCcc
Q 035878 268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG-NSIGGKIPAEIGSLS-QLVVLDLSSNQLSG 345 (496)
Q Consensus 268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~ 345 (496)
.|+++...|..|..+++|++|++++|.+.+..+..+....++..+++.+ +++....+..|..+. .+++|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 6777777677778888888888888888766665566666777777755 455554455555553 5777888888877
Q ss_pred ccchhhcCCCCCCEEeccC-CcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhcc
Q 035878 346 EIPAQIGNLTELSTLSLNG-NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIG 424 (496)
Q Consensus 346 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 424 (496)
.++.......+|+++++++ |.++...+..|..+++|++||+++|+++...+.. +.+|+.|.+.++.--..+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 4444444556777777764 4555333345677777888888888777433332 4455555555543333566 366
Q ss_pred CCccccccccccCC
Q 035878 425 NLVGLQDLLDLSYN 438 (496)
Q Consensus 425 ~l~~L~~LL~Ls~N 438 (496)
.+++|+.+ +++++
T Consensus 244 ~l~~L~~l-~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEA-SLTYP 256 (350)
T ss_dssp TCCSCCEE-ECSCH
T ss_pred hCcChhhC-cCCCC
Confidence 67777777 77654
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.4e-21 Score=176.19 Aligned_cols=175 Identities=25% Similarity=0.215 Sum_probs=102.8
Q ss_pred CCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878 260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339 (496)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 339 (496)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444444433444455555555555555554444445555566666666666655444455666666666666
Q ss_pred CCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccC
Q 035878 340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI 419 (496)
Q Consensus 340 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 419 (496)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .++.|++|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 666665545556666677777777776665555556667777777777776654 3456777777777777777
Q ss_pred ChhccCCccccccccccCCcCCccchh
Q 035878 420 PFQIGNLVGLQDLLDLSYNSLTGEIPA 446 (496)
Q Consensus 420 p~~~~~l~~L~~LL~Ls~N~l~~~~p~ 446 (496)
|..++.++. +...|...|..+.
T Consensus 182 p~~~~~l~~-----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 182 RNSAGSVAP-----DSAKCSGSGKPVR 203 (208)
T ss_dssp BCTTSSBCT-----TCSBBTTTCCBGG
T ss_pred eccCccccC-----CccccccCCCcce
Confidence 777665543 4444544444333
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.8e-21 Score=203.32 Aligned_cols=183 Identities=23% Similarity=0.352 Sum_probs=158.4
Q ss_pred CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878 283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL 362 (496)
Q Consensus 283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 362 (496)
.+++.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999999987 66655 378999999999999 566 567899999999999997 676 654 9999999
Q ss_pred cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878 363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442 (496)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~ 442 (496)
++|++++ +|. .+++|++|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.| +|++|+|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L-~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL-DVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE-ECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE-ECcCCCCC-
Confidence 9999997 666 68999999999999996 665 57899999999999996 777 65 899999 99999999
Q ss_pred cchhhhcCCCCC-------CEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 443 EIPAQLEKLTSL-------QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 443 ~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
.+|. +.. +| ++|+|++|+++ .+|..+..+++|++|+|++|+++|.+|.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 6777 654 77 99999999999 6888888899999999999999998773
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2e-21 Score=192.46 Aligned_cols=241 Identities=19% Similarity=0.171 Sum_probs=187.2
Q ss_pred CEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccE-EEccc
Q 035878 215 TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTY-IDLSY 292 (496)
Q Consensus 215 ~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~ls~ 292 (496)
++++.++++++.+|..+ .+++++|++++|+++...+..|.++++|++|+|++|++.+.++ ..|..++++++ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67888999999999877 3689999999999986656678999999999999999877665 46788888776 56677
Q ss_pred CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccC-CcCccccchhhcCCC-CCCEEeccCCcCccc
Q 035878 293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS-NQLSGEIPAQIGNLT-ELSTLSLNGNDISGP 370 (496)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~ 370 (496)
|+++...|..|..+++|++|++++|++++..+..+....++..+++.+ +.+....+..|..+. .+++|++++|+++ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 899988888899999999999999999877776777777888999876 456644445566654 6889999999998 4
Q ss_pred cchhhcCCCCCCEEEccC-CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhc
Q 035878 371 IPEEIGALLNLDSLDLSM-NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE 449 (496)
Q Consensus 371 ~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~ 449 (496)
++.......+|+++++++ |.++...+..|..+++|++|++++|+++...+..+.+++.|+.+ ++ +.+. .+|. +.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l-~~--~~l~-~lP~-l~ 243 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR-ST--YNLK-KLPT-LE 243 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT-TC--TTCC-CCCC-TT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc-cC--CCcC-cCCC-ch
Confidence 555555667899999985 56664444578899999999999999985444456556655544 33 3444 6663 78
Q ss_pred CCCCCCEEEcccCc
Q 035878 450 KLTSLQSMNLSHNN 463 (496)
Q Consensus 450 ~l~~L~~L~Ls~N~ 463 (496)
++++|+.++++++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 89999999997654
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=9.8e-20 Score=169.09 Aligned_cols=135 Identities=24% Similarity=0.238 Sum_probs=94.1
Q ss_pred CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219 (496)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (496)
++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45667777777777666667777777777777777776555555677777777777777777655566677777777777
Q ss_pred CCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCc
Q 035878 220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274 (496)
Q Consensus 220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 274 (496)
++|+++.+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 7777777776666667777777777777655555666677777777777766644
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.83 E-value=3.5e-22 Score=215.89 Aligned_cols=262 Identities=21% Similarity=0.192 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhcCCC--CCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCce
Q 035878 29 TETEALLKWKETLVN--QSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLR 106 (496)
Q Consensus 29 ~~~~~ll~~k~~~~~--~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~ 106 (496)
.++++|+++..+... ...-..|.... +..+.|.++++. .++++.++|.++.+... +. .+.....|..
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~-~~l~~l~Ls~ 200 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTGDS--------TPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ-ALLQHKKLSQ 200 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcCCC--------CccccCCCceec-CCccceEEeeCCCCCcc-hh-hHhhcCccCc
Confidence 678999999988742 33334454322 456789998885 47899999999888753 33 4555556666
Q ss_pred eccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccC
Q 035878 107 FDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGN 186 (496)
Q Consensus 107 L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 186 (496)
+.+..++++.|.+. ..|.. +..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|++
T Consensus 201 ~~i~~~~~~~n~~~-~~~~~---------~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 201 YSIDEDDDIENRMV-MPKDS---------KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred ccccCcccccccee-cChhh---------hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 66667777777765 22332 678889999999999988 67777778999999999999998 78888999
Q ss_pred CCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCC-CcEEE
Q 035878 187 LSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSS-LYRVR 265 (496)
Q Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~ 265 (496)
+++|++|+|++|.++ .+|..|+++++|++|+|++|.++.+|..+..+++|+.|++++|.+++.+|..+..+.. +..++
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 999999999999998 7788889999999999999999889988888999999999999998888877654322 22467
Q ss_pred ccCCCCCCccccccCCCCCccEEEcccC--------cccccCCcCcCCCCCCCEEEccCCccc
Q 035878 266 LESNELTGDLEQDFGIYPNLTYIDLSYN--------RLQGEVSPKWGKCQKLTLLGLAGNSIG 320 (496)
Q Consensus 266 L~~n~l~~~~~~~~~~l~~L~~L~ls~n--------~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (496)
+.+|.+++.+|. .|+.|+++.| .+.+..+..+..+..++...++.|-+.
T Consensus 348 l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 888888877764 3455666665 233333333444555555666666554
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=171.66 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=129.8
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccc-hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIP-AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM 388 (496)
Q Consensus 310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 388 (496)
+.+++++|.++. +|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 588899988874 565543 457899999999986644 4578889999999999999877777888889999999999
Q ss_pred CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878 389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI 468 (496)
Q Consensus 389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 468 (496)
|++++..+..|..+++|++|+|++|++++..|..+..+++|++| +|++|++++..|..|..+++|++|++++|++++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL-SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE-ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE-ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99988878888888999999999999988888888888888888 89999988877888888888999999998887654
Q ss_pred c
Q 035878 469 P 469 (496)
Q Consensus 469 p 469 (496)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1e-19 Score=175.28 Aligned_cols=187 Identities=25% Similarity=0.336 Sum_probs=152.6
Q ss_pred EEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 035878 264 VRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL 343 (496)
Q Consensus 264 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 343 (496)
+.+..+.+++.. .+..+++|++|++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 344555555432 234578899999999998754 3 47888999999999999987544 88999999999999999
Q ss_pred ccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhc
Q 035878 344 SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI 423 (496)
Q Consensus 344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 423 (496)
++ ++ .+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..| +
T Consensus 103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 85 33 488999999999999999854 4688899999999999999865 568889999999999999986554 8
Q ss_pred cCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878 424 GNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 424 ~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
..+++|++| ++++|++++ +|. +..+++|++|++++|+++..
T Consensus 175 ~~l~~L~~L-~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 175 AGLTKLQNL-YLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TTCTTCCEE-ECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred cCCCccCEE-ECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 889999999 999999985 453 88899999999999998754
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=8.3e-20 Score=168.46 Aligned_cols=153 Identities=23% Similarity=0.298 Sum_probs=125.2
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC
Q 035878 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN 389 (496)
Q Consensus 310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 389 (496)
+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 4555443 68888999999888766667888888889999888888777888888888888888888
Q ss_pred cCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 390 RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 390 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
++++..+..|..+++|++|+|++|++++..|..|..+++|++| +|++|++++..+..|..+++|++|+|++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL-SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE-ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8886666667888888888888888887778888888888888 888888887777778888888888888888764
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=8.6e-20 Score=181.46 Aligned_cols=176 Identities=25% Similarity=0.193 Sum_probs=113.1
Q ss_pred cEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccC
Q 035878 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIG-SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG 364 (496)
Q Consensus 286 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 364 (496)
+.++++++.++. +|..+. +.++.|++++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 567777777763 454432 3467777777777766666665 677777777777777765556677777777777777
Q ss_pred CcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhc---cCCccccccccccCCcCC
Q 035878 365 NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI---GNLVGLQDLLDLSYNSLT 441 (496)
Q Consensus 365 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~LL~Ls~N~l~ 441 (496)
|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.| +|++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L-~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL-DLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE-ECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE-ECCCCCCC
Confidence 77776555566667777777777777766666666677777777777777664322223 346666666 66666666
Q ss_pred ccchhhhcCCCC--CCEEEcccCcCC
Q 035878 442 GEIPAQLEKLTS--LQSMNLSHNNLS 465 (496)
Q Consensus 442 ~~~p~~l~~l~~--L~~L~Ls~N~l~ 465 (496)
+..+..+..++. ++.|+|++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 544455555555 356666666664
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.7e-19 Score=167.41 Aligned_cols=157 Identities=25% Similarity=0.286 Sum_probs=127.4
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEcc
Q 035878 308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS 387 (496)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 387 (496)
.-+.++.++++++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3567888888876 4555443 788899999999888778888888889999999998876666667888888889998
Q ss_pred CCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878 388 MNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 388 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
+|++++..+..|..+++|++|++++|+++ .+|..+..+++|++| +|++|++++..+..+..+++|++|++++|++.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL-ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE-ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE-ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 88888777777788888888888888887 778888888888888 8888888866667788888888888888888765
Q ss_pred cc
Q 035878 468 IP 469 (496)
Q Consensus 468 ~p 469 (496)
.+
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 43
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=8.9e-20 Score=175.74 Aligned_cols=187 Identities=22% Similarity=0.307 Sum_probs=156.9
Q ss_pred EecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcc
Q 035878 240 FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSI 319 (496)
Q Consensus 240 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 319 (496)
+.+..+.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 344455544332 245678999999999999865 3 47889999999999999987654 88999999999999999
Q ss_pred cccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhh
Q 035878 320 GGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI 399 (496)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 399 (496)
++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+ +
T Consensus 103 ~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 863 3489999999999999999864 4688999999999999999865 578899999999999999997655 8
Q ss_pred hCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCcc
Q 035878 400 GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE 443 (496)
Q Consensus 400 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~ 443 (496)
..+++|++|++++|.+++ ++ .+..+++|+.| ++++|+++..
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L-~l~~n~i~~~ 215 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVL-ELFSQECLNK 215 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEE-EEEEEEEECC
T ss_pred cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEE-ECcCCcccCC
Confidence 899999999999999985 45 48899999999 9999999853
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=164.98 Aligned_cols=157 Identities=21% Similarity=0.200 Sum_probs=137.1
Q ss_pred ccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEecc
Q 035878 285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLN 363 (496)
Q Consensus 285 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 363 (496)
-+.+++++|.++. +|..+. ..+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3589999999874 565543 457899999999997754 457889999999999999997777789999999999999
Q ss_pred CCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCcc
Q 035878 364 GNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE 443 (496)
Q Consensus 364 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~ 443 (496)
+|++++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.+ ++++|.+++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL-NLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE-ECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE-EecCcCCcCC
Confidence 999998888889999999999999999998888889999999999999999998889999999999999 9999999865
Q ss_pred ch
Q 035878 444 IP 445 (496)
Q Consensus 444 ~p 445 (496)
.+
T Consensus 169 c~ 170 (220)
T 2v70_A 169 CY 170 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 44
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=6.3e-20 Score=193.69 Aligned_cols=192 Identities=22% Similarity=0.272 Sum_probs=138.3
Q ss_pred CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878 164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS 243 (496)
Q Consensus 164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~ 243 (496)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|++++++. +..+++|+.|+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 345556666666664433 4567888888888888874 33 47788888888888888888766 7778888888888
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccC
Q 035878 244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI 323 (496)
Q Consensus 244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 323 (496)
+|.+++. +.+..+++|++|+|++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 8887752 3577778888888888887753 3466777777888877777754 45677777777777777777655
Q ss_pred CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc
Q 035878 324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP 370 (496)
Q Consensus 324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 370 (496)
| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 4 67777777777777777653 3466777777777777777643
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.4e-19 Score=191.02 Aligned_cols=188 Identities=21% Similarity=0.252 Sum_probs=147.6
Q ss_pred eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL 190 (496)
Q Consensus 111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 190 (496)
.++++.+.+.+.++ +..+++|++|++++|.+... + .+..+++|++|+|++|.+++..| +..+++|
T Consensus 25 ~l~l~~~~i~~~~~-----------~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 89 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT-----------QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNL 89 (605)
T ss_dssp HHHTTCSCTTSEEC-----------HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTC
T ss_pred HHhccCCCcccccc-----------hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCC
Confidence 45566666653332 45678899999999988743 3 58889999999999999886544 8888999
Q ss_pred ceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC
Q 035878 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE 270 (496)
Q Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 270 (496)
++|+|++|.+++ +| .+..+++|++|+|++|.+.+++ .+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.
T Consensus 90 ~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 90 GWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp CEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred CEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence 999999998875 33 6888899999999999888874 477788888888888888865 567888888888888888
Q ss_pred CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccccc
Q 035878 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK 322 (496)
Q Consensus 271 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 322 (496)
+.+..| +..+++|+.|++++|.+++. +.+..+++|+.|++++|.+.+.
T Consensus 165 l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 165 ISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 887665 77888888888888888764 3577888888888888887754
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=5e-19 Score=175.97 Aligned_cols=127 Identities=24% Similarity=0.195 Sum_probs=58.4
Q ss_pred ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccccc--CCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccC
Q 035878 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVC--KGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLES 268 (496)
Q Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 268 (496)
++++++++.++ .+|..+. +.+++|++++|++++++...+ .+++|++|++++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35555555555 3444332 235555555555555433322 444444444444444444444444444444444444
Q ss_pred CCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc
Q 035878 269 NELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320 (496)
Q Consensus 269 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (496)
|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 4444333334444444444444444444443444444444444444444444
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1e-18 Score=161.16 Aligned_cols=114 Identities=25% Similarity=0.281 Sum_probs=52.3
Q ss_pred cCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCC
Q 035878 279 FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELS 358 (496)
Q Consensus 279 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 358 (496)
|..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|..|..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 33334444444444444433344444444444444444444433333344444444444444444444444444455555
Q ss_pred EEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878 359 TLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS 392 (496)
Q Consensus 359 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 392 (496)
+|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555554444444444555555555555543
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.8e-19 Score=162.01 Aligned_cols=152 Identities=20% Similarity=0.339 Sum_probs=84.0
Q ss_pred CCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEe
Q 035878 330 LSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLS 409 (496)
Q Consensus 330 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 409 (496)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555555554 333 3445555555555555443 122455555555555555555544455555556666666
Q ss_pred ccCccCCccCChhccCCccccccccccCCc-CCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCC
Q 035878 410 LSQNNLNGTIPFQIGNLVGLQDLLDLSYNS-LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488 (496)
Q Consensus 410 Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 488 (496)
+++|++++..|..+..+++|++| ++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L-~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSI-DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEE-ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEE-EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 66666655555556666666666 666665 33 344 46666677777777777664 33 566667777777777766
Q ss_pred cc
Q 035878 489 EG 490 (496)
Q Consensus 489 ~g 490 (496)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 43
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=7.8e-20 Score=197.55 Aligned_cols=190 Identities=24% Similarity=0.260 Sum_probs=119.5
Q ss_pred cCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcccc
Q 035878 292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPI 371 (496)
Q Consensus 292 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 371 (496)
.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+
T Consensus 210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 210 ENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred cccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence 34443 44667788888889999888887 56666778889999999999988 78888888999999999999988 77
Q ss_pred chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL 451 (496)
Q Consensus 372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l 451 (496)
|..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..+......++|++|.++|.+|.
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~----- 359 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH----- 359 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-----
Confidence 888888999999999999887 67777889999999999999999888887766543332238999999988876
Q ss_pred CCCCEEEcccC--------cCCcccchhhhcCCCCCEEeCcCCCCcccC
Q 035878 452 TSLQSMNLSHN--------NLSGEIPASLSSMLSLVAVNLSYNNLEGPL 492 (496)
Q Consensus 452 ~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 492 (496)
.|+.|++++| .+.+..+..+..+..+....+++|-+.+..
T Consensus 360 -~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 360 -ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp -C-----------------------------------------CCCGGG
T ss_pred -ccceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 3456677776 455555556667777788888888886543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.4e-18 Score=157.44 Aligned_cols=152 Identities=20% Similarity=0.304 Sum_probs=85.9
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEE
Q 035878 306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLD 385 (496)
Q Consensus 306 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (496)
+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555555554 223 34455555555555554431 22455556666666666666555555556666666666
Q ss_pred ccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878 386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465 (496)
Q Consensus 386 Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 465 (496)
+++|++++..|..+..+++|++|++++|.+.+.+| .+..+++|++| ++++|++++ ++ .+..+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L-~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL-NIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE-ECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE-ECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 66666665555566666666666666665222444 45666666666 666666664 33 5667777777777777765
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=1.1e-21 Score=205.77 Aligned_cols=122 Identities=30% Similarity=0.354 Sum_probs=98.7
Q ss_pred CCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccc
Q 035878 356 ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435 (496)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L 435 (496)
.|+.|++++|.+++ +|. ++.+++|++|++++|+++ .+|..++.+++|++|+|++|++++ +| .++.+++|+.| +|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L-~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL-LL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE-EC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE-EC
Confidence 47888888888885 565 888888888888888888 678888888888888888888885 66 78888888888 88
Q ss_pred cCCcCCccc-hhhhcCCCCCCEEEcccCcCCcccch---hhhcCCCCCEEeC
Q 035878 436 SYNSLTGEI-PAQLEKLTSLQSMNLSHNNLSGEIPA---SLSSMLSLVAVNL 483 (496)
Q Consensus 436 s~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~l 483 (496)
++|++++.+ |..++++++|++|+|++|++++.+|. .+..+++|+.||+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888776 88888888888888888888876542 3455788888874
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=7.8e-19 Score=166.50 Aligned_cols=170 Identities=25% Similarity=0.300 Sum_probs=139.3
Q ss_pred CCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEe
Q 035878 282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS 361 (496)
Q Consensus 282 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 361 (496)
+.+++.++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455777788888887543 57788999999999999884 44 67888999999999999986544 88999999999
Q ss_pred ccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC
Q 035878 362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT 441 (496)
Q Consensus 362 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~ 441 (496)
+++|++++ +|.. .. ++|++|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|++| ++++|+++
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L-~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL-DLHGNEIT 163 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE-ECTTSCCC
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE-ECCCCcCc
Confidence 99999985 4432 33 889999999999985 34 588899999999999999854 4 68888999999 99999998
Q ss_pred ccchhhhcCCCCCCEEEcccCcCCcc
Q 035878 442 GEIPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 442 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
+. ..+..+++|++|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 6688899999999999998865
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-18 Score=165.48 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=86.3
Q ss_pred CCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEE
Q 035878 139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLH 218 (496)
Q Consensus 139 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (496)
+.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555556666655332 3555666666666666665 233 45666666666666666664333 66666666666
Q ss_pred CCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc
Q 035878 219 LFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE 298 (496)
Q Consensus 219 L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 298 (496)
+++|+++++|.... ++|++|++++|++++. +.+..+++|++|++++|++++. + .+..+++|++|++++|.+++.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 66666666543222 4555555555555432 2344445555555555544432 1 334444444444444444433
Q ss_pred CCcCcCCCCCCCEEEccCCccc
Q 035878 299 VSPKWGKCQKLTLLGLAGNSIG 320 (496)
Q Consensus 299 ~~~~~~~~~~L~~L~L~~n~l~ 320 (496)
..+..+++|+.|++++|.++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 23334444444444444433
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=3.7e-19 Score=174.55 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=144.5
Q ss_pred CCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc----ccccCCcccCCCCCC
Q 035878 258 CSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS----IGGKIPAEIGSLSQL 333 (496)
Q Consensus 258 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~----l~~~~~~~l~~l~~L 333 (496)
+++|+.+++.. .++...+.+|..+++|+.+++++|.+....+..|..+.++..+....+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 6665555667777777777777777766666667666666666554422 122223345555666
Q ss_pred C-EEEccCCcCccccchhh----cCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEE
Q 035878 334 V-VLDLSSNQLSGEIPAQI----GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSL 408 (496)
Q Consensus 334 ~-~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 408 (496)
+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++|++|
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 6 44443322 222211 134566667666553221111111237888888888888886666678888888888
Q ss_pred eccCccCCccCChhccCCcccc-ccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeC
Q 035878 409 SLSQNNLNGTIPFQIGNLVGLQ-DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNL 483 (496)
Q Consensus 409 ~Ls~n~l~~~~p~~~~~l~~L~-~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 483 (496)
++++| ++...+..|.++.+|+ .+ ++.+ .++..-+..|.+|++|+++++++|+++...+..|.++++|+.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l-~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTL-ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEE-EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEE-EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88887 6655667788888888 88 8887 676555678888999999999888888777778888888888763
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.9e-20 Score=196.41 Aligned_cols=195 Identities=19% Similarity=0.180 Sum_probs=140.5
Q ss_pred CCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEE
Q 035878 281 IYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL 360 (496)
Q Consensus 281 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 360 (496)
.++.|+.|++++|.++ .+|..++.+++|+.|++++|......|.. +..+...+..|..++.+++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccC
Confidence 4455555555555554 44555555555555555443210000000 00111445566667777777777
Q ss_pred e-ccCCcCccccch------hhcC--CCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccc
Q 035878 361 S-LNGNDISGPIPE------EIGA--LLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD 431 (496)
Q Consensus 361 ~-Ls~n~l~~~~~~------~~~~--l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 431 (496)
+ ++.|.+.. ++. .+.. ...|+.|++++|.+++ +|. +..+++|++|+|++|.++ .+|..++.+++|+.
T Consensus 415 ~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 415 DPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490 (567)
T ss_dssp CGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred cchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence 7 55554321 110 0111 1369999999999996 676 999999999999999999 89999999999999
Q ss_pred cccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc-chhhhcCCCCCEEeCcCCCCcccCCC
Q 035878 432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI-PASLSSMLSLVAVNLSYNNLEGPLPD 494 (496)
Q Consensus 432 LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~ 494 (496)
| +|++|++++ +| .++++++|++|+|++|++++.+ |..|..+++|+.|++++|+++|.+|.
T Consensus 491 L-~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 491 L-QASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp E-ECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred E-ECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9 999999996 77 8999999999999999999887 99999999999999999999998774
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=5.8e-18 Score=152.60 Aligned_cols=132 Identities=27% Similarity=0.387 Sum_probs=113.0
Q ss_pred CEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccch-hhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccC
Q 035878 334 VVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE-EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQ 412 (496)
Q Consensus 334 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~ 412 (496)
+++++++|.++ .+|..+. +++++|++++|++++..+. .+..+++|++|++++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78899999986 6676554 3899999999999866554 488899999999999999988888899999999999999
Q ss_pred ccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc
Q 035878 413 NNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469 (496)
Q Consensus 413 n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 469 (496)
|++++..+..+..+++|++| +|++|++++.+|..+..+++|++|++++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTL-NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEE-ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEE-ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888888889999998 999999998888889899999999999999987655
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=3.1e-18 Score=167.95 Aligned_cols=222 Identities=10% Similarity=0.014 Sum_probs=141.1
Q ss_pred CCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc----cccCCcCcCCCCCC
Q 035878 234 GGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL----QGEVSPKWGKCQKL 309 (496)
Q Consensus 234 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l----~~~~~~~~~~~~~L 309 (496)
+++|+.+++.. .++..-+.+|.+|++|+.+++..|.+....+..|..+.++..+....+.. .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 34444444444 34333344566666666666666666655555666666665555544221 11223344555556
Q ss_pred C-EEEccCCc-ccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEcc
Q 035878 310 T-LLGLAGNS-IGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS 387 (496)
Q Consensus 310 ~-~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 387 (496)
+ .+.+.... +.......-....+++.+.+.++-...........+++|+++++++|+++...+..|..+++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 5 44443321 110111111234566777776653322222222347889999999988886666778889999999998
Q ss_pred CCcCCCCChhhhhCCCCCC-EEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878 388 MNRLSGPIPKQIGELRDLR-SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL 459 (496)
Q Consensus 388 ~n~l~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L 459 (496)
+| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+ ++++|+++..-+..|.++++|+.+..
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l-~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV-LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE-EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE-EeCCCccCccchhhhcCCcchhhhcc
Confidence 87 7756667889999999 999988 7775667889999999999 99999998666778999999998864
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.6e-17 Score=144.88 Aligned_cols=132 Identities=23% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCCCEEeccCCcCc-cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccc
Q 035878 355 TELSTLSLNGNDIS-GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433 (496)
Q Consensus 355 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL 433 (496)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L- 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL- 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE-
Confidence 44555555555554 34444445555555555555555533 345555555555555555554455555555555555
Q ss_pred cccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcccc---hhhhcCCCCCEEeCcCCCCc
Q 035878 434 DLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGEIP---ASLSSMLSLVAVNLSYNNLE 489 (496)
Q Consensus 434 ~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~ 489 (496)
++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555532 11455666666666666666664443 35666666666666666654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=5.5e-17 Score=146.13 Aligned_cols=173 Identities=21% Similarity=0.302 Sum_probs=138.7
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch-hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA-QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM 388 (496)
Q Consensus 310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 388 (496)
+.+++++|.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999996 56765543 899999999999976654 489999999999999999998899999999999999999
Q ss_pred CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchh-hhcCCCCCCEEEcccCcCCcc
Q 035878 389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPA-QLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
|++++..+..|..+++|++|++++|++++..|..+..+++|+++ ++++|.+++..+. ++.. .++...+..+.....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL-NLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG 164 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE-ECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE-EeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence 99998888889999999999999999999999999999999999 9999999986552 2211 122223444555545
Q ss_pred cchhhhcCCCCCEEeCcCCCCccc
Q 035878 468 IPASLSSMLSLVAVNLSYNNLEGP 491 (496)
Q Consensus 468 ~p~~l~~l~~L~~L~ls~N~l~g~ 491 (496)
.|..+. .....++..+.+.-.
T Consensus 165 ~P~~l~---~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 165 APSKVR---DVQIKDLPHSEFKCS 185 (192)
T ss_dssp SSTTTT---TSBGGGSCTTTCCCC
T ss_pred CChHHc---CCChhhCcHhhcCcC
Confidence 565544 345556777776533
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=3.2e-17 Score=141.29 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=86.2
Q ss_pred CCCCEEeccCCcCc-cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccc
Q 035878 355 TELSTLSLNGNDIS-GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433 (496)
Q Consensus 355 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL 433 (496)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L- 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL- 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE-
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE-
Confidence 45666666666665 45555556666666666666666644 456666667777777777666566666666777777
Q ss_pred cccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcccc---hhhhcCCCCCEEeCcC
Q 035878 434 DLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGEIP---ASLSSMLSLVAVNLSY 485 (496)
Q Consensus 434 ~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~ 485 (496)
++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777652 34667778888888888888876655 4677788888887764
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1.7e-15 Score=152.12 Aligned_cols=265 Identities=12% Similarity=0.120 Sum_probs=173.7
Q ss_pred CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL 217 (496)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (496)
.+..++.+.+.++ ++.....+|.++ +|+.+++..+ ++.....+|.++ +|+.+.+.. .++...+.+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3456777777653 555666777776 7999998776 665556667774 689998886 6665666788889999999
Q ss_pred ECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc
Q 035878 218 HLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG 297 (496)
Q Consensus 218 ~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 297 (496)
++..|+++.++...+...+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++......|.. .+|+.+.+ .+.++.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~ 261 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN 261 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE
Confidence 9998888888888777888888888744 55455567778888888888764 44344455655 67777777 344555
Q ss_pred cCCcCcCCCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc
Q 035878 298 EVSPKWGKCQKLTLLGLAGNSIG-----GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372 (496)
Q Consensus 298 ~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (496)
.....|.+|++|+.+++.+|.+. ...+..|.+|++|+.+++.+ .++..-...|.+|++|+.+.+..+ ++..-.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 55666777777777777766554 23445566666666666663 354344455666666666666443 443444
Q ss_pred hhhcCCCCCCEEEccCCcCCCCChhhhhCCC-CCCEEeccCcc
Q 035878 373 EEIGALLNLDSLDLSMNRLSGPIPKQIGELR-DLRSLSLSQNN 414 (496)
Q Consensus 373 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~-~L~~L~Ls~n~ 414 (496)
..|..+ +|+.+++++|.+....+..|..++ .++.|.+..+.
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 555566 666666666655544444454442 45555555543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1.2e-16 Score=140.59 Aligned_cols=132 Identities=21% Similarity=0.224 Sum_probs=72.0
Q ss_pred CCccEEEcccCccc-ccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEe
Q 035878 283 PNLTYIDLSYNRLQ-GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS 361 (496)
Q Consensus 283 ~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 361 (496)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 44455555555555566655555543 4455555566666666665554555555555666666
Q ss_pred ccCCcCcccc-chhhcCCCCCCEEEccCCcCCCCCh---hhhhCCCCCCEEeccCccCC
Q 035878 362 LNGNDISGPI-PEEIGALLNLDSLDLSMNRLSGPIP---KQIGELRDLRSLSLSQNNLN 416 (496)
Q Consensus 362 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~---~~l~~~~~L~~L~Ls~n~l~ 416 (496)
+++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666555321 1445555555555555555554333 24555555555555555554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=1.9e-16 Score=140.66 Aligned_cols=134 Identities=25% Similarity=0.282 Sum_probs=106.6
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEecc
Q 035878 332 QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS 411 (496)
Q Consensus 332 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls 411 (496)
..+.++++++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567888888887 455443 3688899999888887666677888888889998888887666677888888888888
Q ss_pred CccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc
Q 035878 412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469 (496)
Q Consensus 412 ~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 469 (496)
+|++++..+..+..+++|++| ++++|++++..+..+..+++|++|++++|++++..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKEL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEE-ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888887666667888888888 888888886655667788888888888888887655
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=7.5e-17 Score=138.91 Aligned_cols=126 Identities=23% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCCEEEccCCcCc-cccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEec
Q 035878 332 QLVVLDLSSNQLS-GEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSL 410 (496)
Q Consensus 332 ~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L 410 (496)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4445555555544 34444444555555555555555433 34455555555555555555445555555555555555
Q ss_pred cCccCCcc-CChhccCCccccccccccCCcCCccch---hhhcCCCCCCEEEcc
Q 035878 411 SQNNLNGT-IPFQIGNLVGLQDLLDLSYNSLTGEIP---AQLEKLTSLQSMNLS 460 (496)
Q Consensus 411 s~n~l~~~-~p~~~~~l~~L~~LL~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls 460 (496)
++|++++. .+..+..+++|+++ ++++|++++..+ ..+..+++|++||++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSL-DLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEE-ECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEE-eCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555542 23455555666666 666666654433 356666666666665
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=141.26 Aligned_cols=128 Identities=27% Similarity=0.369 Sum_probs=98.6
Q ss_pred CEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCc
Q 035878 334 VVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQN 413 (496)
Q Consensus 334 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n 413 (496)
+++++++|.++ .+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57788888877 5565442 57888888888887 66777888888888888888888777777888888888888888
Q ss_pred cCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 414 NLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
++++..|..|..+++|++| +|++|++++..+..|..+++|++|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLL-SLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEE-ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEE-ECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8887777777788888888 888888886555567778888888888887754
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=8.1e-15 Score=147.09 Aligned_cols=262 Identities=11% Similarity=0.113 Sum_probs=116.0
Q ss_pred CCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEcc
Q 035878 188 SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE 267 (496)
Q Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 267 (496)
..++.+.+.+ .++.....+|.++ +|+.+++..+ ++.|+...+...+|+.+.+.. .+...-+.+|.+|++|+.+++.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 4444444443 2332333444443 4555555443 444444333333455554443 3333333455556666666666
Q ss_pred CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc
Q 035878 268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI 347 (496)
Q Consensus 268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 347 (496)
.|.++......|. +.+|+.+.+..+ +.......|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++..-
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA 263 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC
Confidence 5555544334444 355555555532 44444445555555555555543 33333344444 455555552 2233233
Q ss_pred chhhcCCCCCCEEeccCCcCc-----cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChh
Q 035878 348 PAQIGNLTELSTLSLNGNDIS-----GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ 422 (496)
Q Consensus 348 ~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 422 (496)
...|.+|++|+.+++.+|.+. ...+..|..|++|+.+++.+ .++..-..+|.+|++|+.+.+..+ ++..-+..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 444555555555555554443 12233344444444444442 233223334444444444444332 33222333
Q ss_pred ccCCccccccccccCCcCCccchhhhcCCC-CCCEEEcccC
Q 035878 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLT-SLQSMNLSHN 462 (496)
Q Consensus 423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N 462 (496)
|.++ +|+.+ ++++|.+....+..|.+++ +++.|.+..+
T Consensus 342 F~~~-~L~~l-~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 342 FNNT-GIKEV-KVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSSS-CCCEE-EECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCC-CCCEE-EEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 4444 44444 4444444332233333332 3344444433
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.5e-15 Score=134.70 Aligned_cols=133 Identities=26% Similarity=0.273 Sum_probs=104.8
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM 388 (496)
Q Consensus 309 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 388 (496)
.+.+++++++++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4678888888774 44333 36888888888888866666678888888888888888876666678888888888888
Q ss_pred CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccch
Q 035878 389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIP 445 (496)
Q Consensus 389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p 445 (496)
|++++..+..+..+++|++|++++|++++..+..+..+++|+++ ++++|.+++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI-WLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE-ECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE-EecCCCeeccCc
Confidence 88887777777888888888888888886555556778888888 888888887654
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=2.3e-14 Score=143.90 Aligned_cols=326 Identities=9% Similarity=0.005 Sum_probs=183.3
Q ss_pred CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (496)
|.++.+|+.+.+..+ ++.....+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++..++
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 555666666666532 44444555666666666666543 33333445556666666555433 2223334444443222
Q ss_pred EEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCc
Q 035878 216 DLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNR 294 (496)
Q Consensus 216 ~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 294 (496)
...... ...+. ..+..+.+|+.+.+..+. ...-...|.++.+|+.+.+..+ ++......|..+..|+.+.+..+.
T Consensus 144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 144 ITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 222111 11111 223344555555554432 2122345566666666666554 333334456666666666665443
Q ss_pred ccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchh
Q 035878 295 LQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374 (496)
Q Consensus 295 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 374 (496)
.. +.........|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+....+.+. ...
T Consensus 220 ~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~ 292 (394)
T 4fs7_A 220 YY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKT 292 (394)
T ss_dssp CE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTT
T ss_pred eE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccc
Confidence 22 2223334456777766543 33334455667777777777666443 44455677777777776655432 235
Q ss_pred hcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCC
Q 035878 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL 454 (496)
Q Consensus 375 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L 454 (496)
|..+.+|+.+.+.++ ++..-..+|.++.+|+.+++.++ ++..-...|.+|.+|+.+ ++..+ ++..-..+|.+|++|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i-~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI-NFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE-CCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE-EECcc-ccEehHHHhhCCCCC
Confidence 667777888877654 44344566777888888888644 554445677788888888 78766 554445678888888
Q ss_pred CEEEcccCcCCcccchhhhcCCCCCEE
Q 035878 455 QSMNLSHNNLSGEIPASLSSMLSLVAV 481 (496)
Q Consensus 455 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L 481 (496)
+.+++..+ ++ .+...|.++++|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 88888754 33 345667777777764
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=136.68 Aligned_cols=128 Identities=27% Similarity=0.360 Sum_probs=110.6
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC
Q 035878 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN 389 (496)
Q Consensus 310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 389 (496)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67889999888 4565443 58999999999998 67788999999999999999999887888999999999999999
Q ss_pred cCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878 390 RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442 (496)
Q Consensus 390 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~ 442 (496)
++++..+..|..+++|++|+|++|++++..+..|..+++|+.+ ++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL-AIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE-ECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE-EeCCCCeec
Confidence 9998888889999999999999999986666678889999999 999998875
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=2.3e-14 Score=143.93 Aligned_cols=318 Identities=14% Similarity=0.080 Sum_probs=235.3
Q ss_pred CcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccc
Q 035878 152 LSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV 231 (496)
Q Consensus 152 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l 231 (496)
++.+...+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++......|.++++|+.+.+..+ +..+....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45555678999999999999854 66566778999999999999865 55455678889999998877644 44444444
Q ss_pred cCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCE
Q 035878 232 CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311 (496)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 311 (496)
+....+........ ....-..+|.++++|+.+.+..+. .......|..+++|+.+++..+ ++......|..+..|+.
T Consensus 136 F~~~~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCDFKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTCCCSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred eecccccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 33333333333222 222234678899999999997654 3344567888999999999776 55455677889999999
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcC
Q 035878 312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRL 391 (496)
Q Consensus 312 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 391 (496)
+.+..+... +........+|+.+.+.... +......+..+..++.+.+..+... .....|..+..++.+....+.+
T Consensus 213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred eecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence 888766433 23344456789999887543 3344556889999999999887554 5566788899999998887664
Q ss_pred CCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh
Q 035878 392 SGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471 (496)
Q Consensus 392 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 471 (496)
. ...|..+.+|+.+.+.++ ++......|.++.+|+.+ ++..+ ++..-..+|.+|++|+.+++..+ ++..-..+
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i-~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI-DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE-CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred c---cccccccccccccccccc-cceechhhhcCCCCCCEE-EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 4 246888999999999865 654556778999999999 99754 66444678999999999999877 77566778
Q ss_pred hhcCCCCCEEeCcCC
Q 035878 472 LSSMLSLVAVNLSYN 486 (496)
Q Consensus 472 l~~l~~L~~L~ls~N 486 (496)
|.+|.+|+.+++..+
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 999999999998765
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=6.1e-18 Score=153.23 Aligned_cols=150 Identities=24% Similarity=0.311 Sum_probs=107.2
Q ss_pred CCCEEEccCCcCccccch------hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCC
Q 035878 332 QLVVLDLSSNQLSGEIPA------QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDL 405 (496)
Q Consensus 332 ~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 405 (496)
.++.++++.+.++|.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 444444444444444443 67777888888888888775 55 6777788888888888887 566667677788
Q ss_pred CEEeccCccCCccCChhccCCccccccccccCCcCCccch-hhhcCCCCCCEEEcccCcCCcccch----------hhhc
Q 035878 406 RSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIP-AQLEKLTSLQSMNLSHNNLSGEIPA----------SLSS 474 (496)
Q Consensus 406 ~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~ 474 (496)
++|++++|++++ +| .+..+++|++| ++++|++++..+ ..+..+++|++|++++|++++.+|. .+..
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L-~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVL-YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEE-EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEE-ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 888888888875 44 57777888888 888888874322 4677888888888888888776654 2778
Q ss_pred CCCCCEEeCcCCCCc
Q 035878 475 MLSLVAVNLSYNNLE 489 (496)
Q Consensus 475 l~~L~~L~ls~N~l~ 489 (496)
+++|++|| +|.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 88888887 56554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.2e-15 Score=135.29 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=64.2
Q ss_pred cCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCC
Q 035878 327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR 406 (496)
Q Consensus 327 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 406 (496)
+.++++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3345556666666665552 333222223555555555555533 3445555555555555555533333335555555
Q ss_pred EEeccCccCCccCCh--hccCCccccccccccCCcCCccchhh----hcCCCCCCEEEcccCcC
Q 035878 407 SLSLSQNNLNGTIPF--QIGNLVGLQDLLDLSYNSLTGEIPAQ----LEKLTSLQSMNLSHNNL 464 (496)
Q Consensus 407 ~L~Ls~n~l~~~~p~--~~~~l~~L~~LL~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l 464 (496)
+|++++|+++ .+|. .+..+++|+.+ ++++|.++ .+|.. +..+++|++||+++|..
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L-~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYL-CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEE-ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEE-EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555555553 3333 44444455554 55555544 23332 44445555555554444
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=3.6e-15 Score=132.23 Aligned_cols=132 Identities=24% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCE
Q 035878 304 GKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDS 383 (496)
Q Consensus 304 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (496)
..+.+|++|++++|.++. +|......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344555555555555552 232222222555555555555533 34555555555555555555433333355555555
Q ss_pred EEccCCcCCCCChh--hhhCCCCCCEEeccCccCCccCChh----ccCCccccccccccCCcCC
Q 035878 384 LDLSMNRLSGPIPK--QIGELRDLRSLSLSQNNLNGTIPFQ----IGNLVGLQDLLDLSYNSLT 441 (496)
Q Consensus 384 L~Ls~n~l~~~~~~--~l~~~~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~LL~Ls~N~l~ 441 (496)
|++++|+++ .+|. .+..+++|++|++++|+++ .+|.. +..+++|+.+ |+++|.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~L-d~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL-DFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEE-TTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcccee-CCCcCCHH
Confidence 555555554 3333 4555555555555555554 33332 4555555555 55555443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=2.6e-17 Score=149.11 Aligned_cols=133 Identities=25% Similarity=0.309 Sum_probs=92.4
Q ss_pred ccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCC
Q 035878 326 EIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDL 405 (496)
Q Consensus 326 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L 405 (496)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 56666777777777777764 45 6666777777777777776 556666666777777777777774 44 46677777
Q ss_pred CEEeccCccCCccCC-hhccCCccccccccccCCcCCccchh----------hhcCCCCCCEEEcccCcCCc
Q 035878 406 RSLSLSQNNLNGTIP-FQIGNLVGLQDLLDLSYNSLTGEIPA----------QLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 406 ~~L~Ls~n~l~~~~p-~~~~~l~~L~~LL~Ls~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~~ 466 (496)
++|++++|++++..+ ..+..+++|+++ ++++|.+++.+|. .+..+++|++|| +|.++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDL-LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEE-EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEE-EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777777764322 356777777777 7777777765554 377888999887 666653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=3.6e-14 Score=124.95 Aligned_cols=109 Identities=23% Similarity=0.257 Sum_probs=90.7
Q ss_pred CCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccc
Q 035878 356 ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435 (496)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L 435 (496)
..+++++++|.++ .+|..+. ++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++| +|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L-~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL-SL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE-EC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE-EC
Confidence 3578899999988 4666553 788999999999998878888889999999999999987666677888999988 99
Q ss_pred cCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878 436 SYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI 468 (496)
Q Consensus 436 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 468 (496)
++|++++..+..|.++++|++|+|++|+++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999998766667888999999999999887653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=1.2e-13 Score=122.10 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=89.1
Q ss_pred CCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccccccc
Q 035878 357 LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436 (496)
Q Consensus 357 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls 436 (496)
-+.+++++|+++ .+|..+. ++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++| +|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L-~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL-DLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE-ECC
Confidence 368899999986 6676554 789999999999998888888899999999999999986655667888999998 999
Q ss_pred CCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878 437 YNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 437 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
+|++++..+..|.++++|++|+|++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999866666688899999999999988754
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.4e-13 Score=119.65 Aligned_cols=109 Identities=28% Similarity=0.275 Sum_probs=95.0
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEecc
Q 035878 332 QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS 411 (496)
Q Consensus 332 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls 411 (496)
..+++++++|.++ .+|..+ .++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999998 466655 3889999999999998888889999999999999999998777778899999999999
Q ss_pred CccCCccCChhccCCccccccccccCCcCCccc
Q 035878 412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI 444 (496)
Q Consensus 412 ~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~ 444 (496)
+|++++..+..+..+++|++| +|++|.++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L-~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHI-WLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEE-ECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEE-EeCCCCCCCCc
Confidence 999997777778999999999 99999998653
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=2.1e-11 Score=122.34 Aligned_cols=305 Identities=11% Similarity=0.127 Sum_probs=152.9
Q ss_pred CCCCCCCcEEEccCCc---CcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCC
Q 035878 136 MTGLLGLKNFLLQDNM---LSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212 (496)
Q Consensus 136 l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (496)
|.++++|+.+.+..|. ++..-..+|.+|.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence 6677777777776653 44444556777777777666544 33344455667777777777543 3324445666677
Q ss_pred CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878 213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY 292 (496)
Q Consensus 213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 292 (496)
+|+.+.+..+ ++.+....+...+|+.+.+..+-. ......+.++.+++................+........-.
T Consensus 161 ~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 235 (394)
T 4gt6_A 161 SLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL--- 235 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE---
T ss_pred ccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccccccc---
Confidence 7777777543 444555555556666666654321 12234455666666665544433211000000000000000
Q ss_pred CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc
Q 035878 293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372 (496)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (496)
..+.....+..+.+.. .++......|.++..|+.+.+.++... .....|.++++|+.+.+. +.++....
T Consensus 236 --------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~ 304 (394)
T 4gt6_A 236 --------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE 304 (394)
T ss_dssp --------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT
T ss_pred --------cccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc
Confidence 0011122233333321 222233345566666666666544332 333455666666666664 23433344
Q ss_pred hhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCC
Q 035878 373 EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT 452 (496)
Q Consensus 373 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~ 452 (496)
..|..+.+|+.+++..+ ++..-..+|.+|.+|+.+.+..+ ++..-...|.+|++|+.+ ++.++... ...+..+.
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i-~~~~~~~~---~~~~~~~~ 378 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI-EYSGSRSQ---WNAISTDS 378 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE-EESSCHHH---HHTCBCCC
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE-EECCceee---hhhhhccC
Confidence 45666666666666543 43333456666777777777543 443334566667777776 66665432 13455666
Q ss_pred CCCEEEcccCcC
Q 035878 453 SLQSMNLSHNNL 464 (496)
Q Consensus 453 ~L~~L~Ls~N~l 464 (496)
.|+.+.+..+.+
T Consensus 379 ~L~~i~i~~~~~ 390 (394)
T 4gt6_A 379 GLQNLPVAPGSI 390 (394)
T ss_dssp CC----------
T ss_pred CCCEEEeCCCCE
Confidence 777776665544
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=5.9e-13 Score=117.55 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL 219 (496)
Q Consensus 140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (496)
++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 56778888888888777777888888888888888888655555678888888888888887655556778888888888
Q ss_pred CCCCCccccc
Q 035878 220 FINKLSGLPP 229 (496)
Q Consensus 220 ~~n~l~~lp~ 229 (496)
++|.+...+.
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 8887776543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=7.9e-15 Score=145.75 Aligned_cols=182 Identities=21% Similarity=0.216 Sum_probs=101.6
Q ss_pred CCCCEEEccCCcccccCCccc----C-CCCCCCEEEccCCcCccccchh-hcCCCCCCEEeccCCcCccccchhh-----
Q 035878 307 QKLTLLGLAGNSIGGKIPAEI----G-SLSQLVVLDLSSNQLSGEIPAQ-IGNLTELSTLSLNGNDISGPIPEEI----- 375 (496)
Q Consensus 307 ~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~----- 375 (496)
+.|+.|++++|.++......+ . ..++|++|+|++|.++...... ...+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345556666655553222221 1 2246666666666665432222 2234566777777776654433333
Q ss_pred cCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccCccCCcc----CChhccCCccccccccccCCcCCcc----
Q 035878 376 GALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQNNLNGT----IPFQIGNLVGLQDLLDLSYNSLTGE---- 443 (496)
Q Consensus 376 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~LL~Ls~N~l~~~---- 443 (496)
...++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+...+.|++| +|++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L-~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL-NVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE-ECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE-ECCCCCCCHHHHHH
Confidence 2345677777777776532 333445667777777777776543 23445556677777 7777777642
Q ss_pred chhhhcCCCCCCEEEcccCcCCcccchhhhcCCC-----CCEEe--CcCCCCc
Q 035878 444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS-----LVAVN--LSYNNLE 489 (496)
Q Consensus 444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-----L~~L~--ls~N~l~ 489 (496)
+...+...++|++|+|++|.+++.....+..+.. |+.+. +..|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3444556677888888888887655555544321 55555 5555554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=1.9e-14 Score=143.08 Aligned_cols=160 Identities=21% Similarity=0.276 Sum_probs=125.6
Q ss_pred CCCCCEEEccCCcCccccchhhc-----CCCCCCEEeccCCcCccccchhh-cCCCCCCEEEccCCcCCCCChhhh----
Q 035878 330 LSQLVVLDLSSNQLSGEIPAQIG-----NLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQI---- 399 (496)
Q Consensus 330 l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l---- 399 (496)
.+.|++|++++|.++......+. ..++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45799999999999865433333 23799999999999975433333 346789999999999986544444
Q ss_pred -hCCCCCCEEeccCccCCcc----CChhccCCccccccccccCCcCCcc----chhhhcCCCCCCEEEcccCcCCcc---
Q 035878 400 -GELRDLRSLSLSQNNLNGT----IPFQIGNLVGLQDLLDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGE--- 467 (496)
Q Consensus 400 -~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~LL~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~--- 467 (496)
...++|++|+|++|.+++. ++..+..+++|++| +|++|++++. ++..+...++|++|+|++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L-~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL-SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE-ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE-eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2468899999999999753 44455778999999 9999999863 466778889999999999999864
Q ss_pred -cchhhhcCCCCCEEeCcCCCCcc
Q 035878 468 -IPASLSSMLSLVAVNLSYNNLEG 490 (496)
Q Consensus 468 -~p~~l~~l~~L~~L~ls~N~l~g 490 (496)
++..+...++|++|||++|+|++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 44556678999999999999864
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=2.2e-11 Score=122.15 Aligned_cols=327 Identities=9% Similarity=0.066 Sum_probs=192.7
Q ss_pred CCCCC-CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC---CcccCCccccCCCCCceEecccCcCCcccCccCCCC
Q 035878 136 MTGLL-GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF---LSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTL 211 (496)
Q Consensus 136 l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (496)
|.++. .|+.+.+..+ ++.+-..+|.+|.+|+.+.++.|. ++..-..+|..+.+|+.+.+..+ ++......|..+
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 56664 5888888754 666667788999999999987763 55445567888888888877654 443455667788
Q ss_pred CCCCEEECCCCCCccccc-cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEc
Q 035878 212 SKLTDLHLFINKLSGLPP-QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDL 290 (496)
Q Consensus 212 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 290 (496)
.+|+.+.+..+ +..++. .+..+..|+.+.+..+ ++..-..+|. ..+|+.+.+..+.. ......|..+.+++....
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEE
T ss_pred cccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceecc
Confidence 88888888543 333332 2333455555555433 1111112222 23455544433211 112233444444444433
Q ss_pred ccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc
Q 035878 291 SYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP 370 (496)
Q Consensus 291 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 370 (496)
........ ...+. ..+.........+.....+..+.+... ++..-...|.++..|+.+.+.++..+ .
T Consensus 213 ~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I 279 (394)
T 4gt6_A 213 DSESYPAI-DNVLY----------EKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-I 279 (394)
T ss_dssp CCSSSCBS-SSCEE----------EECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-E
T ss_pred cccccccc-cceee----------cccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-e
Confidence 32222110 00000 000000000011223344555555432 33234557889999999999876543 5
Q ss_pred cchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcC
Q 035878 371 IPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK 450 (496)
Q Consensus 371 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~ 450 (496)
....|..++.|+.+.+. +.++.....+|.+|.+|+.+++..+ ++..-...|.+|.+|+.+ .+..+ ++..-..+|.+
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i-~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI-AIPSS-VTKIPESAFSN 355 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE-EECTT-CCBCCGGGGTT
T ss_pred cCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE-EECcc-cCEEhHhHhhC
Confidence 55678889999999997 4455455678999999999999865 654556789999999999 99755 66445678999
Q ss_pred CCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCC
Q 035878 451 LTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488 (496)
Q Consensus 451 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 488 (496)
|++|+.+++.++... -..+..+..|+.+.+..|.+
T Consensus 356 C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999999999988653 25677888999998887765
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=7.4e-12 Score=123.29 Aligned_cols=106 Identities=24% Similarity=0.267 Sum_probs=88.6
Q ss_pred CEEeccCC-cCccccchhhcCCCCCCEEEccC-CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccc
Q 035878 358 STLSLNGN-DISGPIPEEIGALLNLDSLDLSM-NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435 (496)
Q Consensus 358 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L 435 (496)
..++++++ +++ .+|. +..+++|++|+|++ |++++..+..|.++++|++|+|++|+|++..|..|.++++|++| +|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL-NL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE-EC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE-eC
Confidence 35688887 887 5777 88888999999986 99987777888899999999999999998888888999999998 99
Q ss_pred cCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878 436 SYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467 (496)
Q Consensus 436 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 467 (496)
++|+|++..+..+..++ |++|+|.+|++...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999866666666665 99999999988743
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=2.2e-09 Score=106.88 Aligned_cols=287 Identities=9% Similarity=0.044 Sum_probs=134.7
Q ss_pred CCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCE
Q 035878 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTD 216 (496)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (496)
....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ ++.....+|..+ +|+.
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSE
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccc
Confidence 3445566666653 344455566777777777777543 443444555555 5666655433 332333344443 6777
Q ss_pred EECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCc------------cccccCCCCC
Q 035878 217 LHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD------------LEQDFGIYPN 284 (496)
Q Consensus 217 L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~ 284 (496)
+++..+ ++.+....+...+++.+.+..+ ++..-...+..+..++.+.+..+..... ....+.....
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred ccCCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence 777543 3334444444445555544332 2222334456666666666554432211 1112223333
Q ss_pred ccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccC
Q 035878 285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG 364 (496)
Q Consensus 285 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 364 (496)
+..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 196 ~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 196 GTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 4433332221 1122233444555555555432 22233344455555555555443 3323333455555555555543
Q ss_pred CcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccccccc
Q 035878 365 NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436 (496)
Q Consensus 365 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls 436 (496)
+ ++......|..+.+|+.+.+.++.++..-..+|.+|.+|+.+.+..+ ++..-...|.+|.+|+.+ .+.
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i-~ip 341 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI-SYP 341 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC-CCC
T ss_pred c-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE-EEC
Confidence 2 22223334455555555555555554333445555555555555432 332223345555555555 443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.4e-11 Score=119.59 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=68.2
Q ss_pred eEEccCC-cccccCCCCCCCCCCCCCCCCCCCCcEEEccC-CcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCC
Q 035878 111 ELDVSRN-NMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQD-NMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLS 188 (496)
Q Consensus 111 ~L~Ls~n-~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 188 (496)
.++.+++ .++ .||. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|++++..|..|.+++
T Consensus 12 ~v~~~~~n~l~-~ip~----------l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH----------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCT-TTTT----------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCC-ccCC----------CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 4566666 666 4654 24556677777774 777766666677777777777777777766666677777
Q ss_pred CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc
Q 035878 189 DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG 226 (496)
Q Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (496)
+|++|+|++|++++..+..+..++ |++|++.+|.+..
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777777777777654444454444 7777777776654
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.21 E-value=1.5e-09 Score=108.08 Aligned_cols=306 Identities=10% Similarity=0.049 Sum_probs=206.3
Q ss_pred CCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCc
Q 035878 159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLI 238 (496)
Q Consensus 159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 238 (496)
++....+|+.+.+... ++..-..+|.++.+|+.+.+..+ ++.....+|.++ +|+.+.+.. .++.++...+...+|+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLD 116 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCS
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcc
Confidence 4556678999999754 66556678999999999999754 665556778777 688887754 4666777777777899
Q ss_pred EEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc------------cCCcCcCCC
Q 035878 239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG------------EVSPKWGKC 306 (496)
Q Consensus 239 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~------------~~~~~~~~~ 306 (496)
.+.+..+- +..-...+.++ +++.+.+..+ ++......|..+.+++.+.+..+.... .....+..+
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 99887652 22223344444 5666665543 333344567777888887776543221 111233445
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEc
Q 035878 307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDL 386 (496)
Q Consensus 307 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 386 (496)
..+..+.+.... .......+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++......|..+.+|+.+.+
T Consensus 194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 566666654432 2234456677788888888665 33344556788899999998776 55455567788888999988
Q ss_pred cCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878 387 SMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466 (496)
Q Consensus 387 s~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 466 (496)
..+ +......+|.++.+|+.+.+.++.++..-...|.+|.+|+.+ ++..+ ++..-..+|.+|++|+.+.+..+ ++.
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i-~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV-TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE-ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE-EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 654 443445678888999999998888875556778889999988 88754 55344567889999999988765 654
Q ss_pred ccchhhhcCCCC
Q 035878 467 EIPASLSSMLSL 478 (496)
Q Consensus 467 ~~p~~l~~l~~L 478 (496)
.-..+|.++..+
T Consensus 347 I~~~aF~~c~~~ 358 (379)
T 4h09_A 347 IESGAFEGSSIT 358 (379)
T ss_dssp ECTTTTTTSSCC
T ss_pred EchhHhhCCCCC
Confidence 445677776543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=1.1e-10 Score=114.95 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=49.7
Q ss_pred CCCCCCEEeccCccCCccCChhcc---CCccccccccccCCcCCcc----chhhhcCCCCCCEEEcccCcCCcccchhhh
Q 035878 401 ELRDLRSLSLSQNNLNGTIPFQIG---NLVGLQDLLDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLS 473 (496)
Q Consensus 401 ~~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~LL~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 473 (496)
.+++|++|+|.+|.+.+..+..+. .++.|++| +|+.|.+++. ++..+.++++|+.|+|++|.++...-..+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L-dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM-DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE-ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE-ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 356677777766666543332222 35667777 7777777653 333445567777777777777654444444
Q ss_pred c-CCCCCEEeCcCCC
Q 035878 474 S-MLSLVAVNLSYNN 487 (496)
Q Consensus 474 ~-l~~L~~L~ls~N~ 487 (496)
. + ...+++++++
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 3 2 3556777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=5.1e-10 Score=110.26 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=97.8
Q ss_pred cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhh--CCCCCCEEeccC--ccCCcc----
Q 035878 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG--ELRDLRSLSLSQ--NNLNGT---- 418 (496)
Q Consensus 347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~Ls~--n~l~~~---- 418 (496)
+...+..+|+|+.|++++|.-. .++. + .+++|++|++..|.+.......+. .+++|++|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455677888888888877311 2232 3 377899999988887654444444 688899998863 222111
Q ss_pred -CChhc--cCCccccccccccCCcCCccchhhhc---CCCCCCEEEcccCcCCcc----cchhhhcCCCCCEEeCcCCCC
Q 035878 419 -IPFQI--GNLVGLQDLLDLSYNSLTGEIPAQLE---KLTSLQSMNLSHNNLSGE----IPASLSSMLSLVAVNLSYNNL 488 (496)
Q Consensus 419 -~p~~~--~~l~~L~~LL~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l 488 (496)
+...+ ..+++|+.| +|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.+
T Consensus 241 ~l~~~l~~~~~p~Lr~L-~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWL-GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GTGGGSCTTTCTTCCEE-EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHhcCCCCCcCEE-eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11122 357899999 9999999865554444 578999999999999875 344556789999999999988
Q ss_pred cc
Q 035878 489 EG 490 (496)
Q Consensus 489 ~g 490 (496)
+.
T Consensus 320 ~d 321 (362)
T 2ra8_A 320 SD 321 (362)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.80 E-value=3.4e-11 Score=112.80 Aligned_cols=64 Identities=31% Similarity=0.317 Sum_probs=34.5
Q ss_pred CCCCCCEEEccCCCCcc--cCCccccCCCCCceEecccCcCCcc-cCccCCCCCCCCEEECCCCCCcc
Q 035878 162 NCKLLTLLALDGNFLSG--PIPSSLGNLSDLAVLAVASNQLSGE-IPANIGTLSKLTDLHLFINKLSG 226 (496)
Q Consensus 162 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~ 226 (496)
++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++. ....+..+ +|++|++++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 45666666666666665 3344555566666666666666543 01112222 56666666655543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=5.4e-09 Score=92.89 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=42.6
Q ss_pred cchhhcCCCCCCEEeccCC-cCccc----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccCccCCc
Q 035878 347 IPAQIGNLTELSTLSLNGN-DISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQNNLNG 417 (496)
Q Consensus 347 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~ 417 (496)
+...+...++|++|+|++| .+... +...+...++|++|+|++|++... +...+...++|++|+|++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445666777788888777 77532 233444556777777777776532 22334445566666666666653
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=9.8e-09 Score=91.22 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=50.7
Q ss_pred ccCCCCCCCEEEccCC-cCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC--
Q 035878 326 EIGSLSQLVVLDLSSN-QLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP-- 394 (496)
Q Consensus 326 ~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-- 394 (496)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4455666777777766 66532 333445566677777777766532 233344456677777777766543
Q ss_pred --ChhhhhCCCCCCEEec--cCccCC
Q 035878 395 --IPKQIGELRDLRSLSL--SQNNLN 416 (496)
Q Consensus 395 --~~~~l~~~~~L~~L~L--s~n~l~ 416 (496)
+...+...++|++|+| ++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2333444455555555 445544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=1.8e-08 Score=94.20 Aligned_cols=79 Identities=28% Similarity=0.363 Sum_probs=47.8
Q ss_pred CCCCCCEEeccCccCCc--cCChhccCCccccccccccCCcCCccchhhhcCCC--CCCEEEcccCcCCcccc-------
Q 035878 401 ELRDLRSLSLSQNNLNG--TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT--SLQSMNLSHNNLSGEIP------- 469 (496)
Q Consensus 401 ~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p------- 469 (496)
++++|++|+|++|++++ .+|..+..+++|+.| +|++|++++. ..+..++ +|++|+|++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L-~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL-NLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEE-ECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEE-ECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45556666666666655 334445556666666 6666666643 2233333 78888888888876554
Q ss_pred hhhhcCCCCCEEe
Q 035878 470 ASLSSMLSLVAVN 482 (496)
Q Consensus 470 ~~l~~l~~L~~L~ 482 (496)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2466778888776
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=2e-06 Score=74.75 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=15.8
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878 308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341 (496)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 341 (496)
.|+.||++++.++...-..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4455555555444433333444444444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=2.4e-06 Score=74.23 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=51.9
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCCEEeccCCc-CccccchhhcCC----CCCCEEEccCCc-CCCCChhhhhCCCC
Q 035878 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND-ISGPIPEEIGAL----LNLDSLDLSMNR-LSGPIPKQIGELRD 404 (496)
Q Consensus 331 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~~~~ 404 (496)
.+|+.||++++.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777665544556667777777777763 554444445443 357777777764 55444445566777
Q ss_pred CCEEeccCcc
Q 035878 405 LRSLSLSQNN 414 (496)
Q Consensus 405 L~~L~Ls~n~ 414 (496)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=7.3e-05 Score=66.07 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=43.0
Q ss_pred hhhcCCCCCCEEeccCC-cCccc----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccCccCCc
Q 035878 349 AQIGNLTELSTLSLNGN-DISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQNNLNG 417 (496)
Q Consensus 349 ~~l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~ 417 (496)
..+.+-+.|++|+|++| ++... +.+.+..-+.|+.|+|++|++.+. +.+.+..-+.|++|+|++|.|.+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 34455677888888775 66432 334455566777777777777632 33444455677777777777764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.34 E-value=0.00014 Score=64.22 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=51.7
Q ss_pred cCCCCCCCEEEccCC-cCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCCC--
Q 035878 327 IGSLSQLVVLDLSSN-QLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGPI-- 395 (496)
Q Consensus 327 l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-- 395 (496)
+.+-+.|++|+|++| .+... +.+.+..-..|+.|+|++|++... +...+..-+.|++|+|+.|.|.+.-
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567777777774 66532 344555666777777777777643 2333445567777777777776432
Q ss_pred --hhhhhCCCCCCEEeccCc
Q 035878 396 --PKQIGELRDLRSLSLSQN 413 (496)
Q Consensus 396 --~~~l~~~~~L~~L~Ls~n 413 (496)
-+.+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 223444455666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.73 E-value=0.0019 Score=53.15 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=37.6
Q ss_pred CEEeccCccCC-ccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878 406 RSLSLSQNNLN-GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465 (496)
Q Consensus 406 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 465 (496)
..++.+++.++ ..+|..+. .++++| +|++|+|+..-+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L-~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTEL-VLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEE-ECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEE-ECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 35554332 346666 77777777555566777777777777777764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.43 E-value=0.0052 Score=50.41 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=26.4
Q ss_pred EEEccCCCCc-ccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCC
Q 035878 168 LLALDGNFLS-GPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKL 224 (496)
Q Consensus 168 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (496)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444444443 23343222 2455555555555544444445555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.42 E-value=18 Score=27.35 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=16.5
Q ss_pred cCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecc
Q 035878 158 EEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196 (496)
Q Consensus 158 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 196 (496)
.+|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444445554444432 222233344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.61 E-value=33 Score=25.88 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=34.9
Q ss_pred CCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCC
Q 035878 175 FLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFIN 222 (496)
Q Consensus 175 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (496)
.++..-..+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 455555677888999999988864 44456677888899988888654
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=25.20 E-value=23 Score=17.97 Aligned_cols=10 Identities=30% Similarity=1.092 Sum_probs=7.4
Q ss_pred CCCcccccee
Q 035878 63 PSPCRWSGIV 72 (496)
Q Consensus 63 ~~~C~w~gv~ 72 (496)
...|+|.|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3569999864
Done!