BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035879
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 178/348 (51%), Gaps = 19/348 (5%)
Query: 8 LSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
++V V+ LAK+ + +P YIRP ++ +I +D + ++P ID++
Sbjct: 1 VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 58
Query: 61 XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYW--QSP 116
+L A +WG ++NHG+ + +E+VKK EFF+LS+EEK+KY Q+
Sbjct: 59 EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 118
Query: 117 EDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVXXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
++G+G + +L+W D FF P + Y+ L+ L
Sbjct: 119 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 178
Query: 177 AMNLILKMGKVLNIKDEEMKN---FFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALT 233
A + + L ++ + ++ E L M++NYYP CPQPE +G+ H+D ALT
Sbjct: 179 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 238
Query: 234 ILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQER 293
+L N V GLQ+ +G W+ +P++ +++IGD +EI++NGKY+SI HR VN + R
Sbjct: 239 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 297
Query: 294 LSVGTFYYTRYDGEVY-PASSLISEKAPALFRRLTVEEYLSGR-FARE 339
+S F D V P ++S ++PA F T +++ + F +E
Sbjct: 298 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 345
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 178/348 (51%), Gaps = 19/348 (5%)
Query: 8 LSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
++V V+ LAK+ + +P YIRP ++ +I +D + ++P ID++
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 59
Query: 61 XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYW--QSP 116
+L A +WG ++NHG+ + +E+VKK EFF+LS+EEK+KY Q+
Sbjct: 60 EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 119
Query: 117 EDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVXXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
++G+G + +L+W D FF P + Y+ L+ L
Sbjct: 120 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 179
Query: 177 AMNLILKMGKVLNIKDEEMKN---FFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALT 233
A + + L ++ + ++ E L M++NYYP CPQPE +G+ H+D ALT
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 234 ILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQER 293
+L N V GLQ+ +G W+ +P++ +++IGD +EI++NGKY+SI HR VN + R
Sbjct: 240 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 294 LSVGTFYYTRYDGEVY-PASSLISEKAPALFRRLTVEEYLSGR-FARE 339
+S F D V P ++S ++PA F T +++ + F +E
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 174/348 (50%), Gaps = 19/348 (5%)
Query: 8 LSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
++V V+ LAK+ + +P YIRP ++ +I +D + ++P ID++
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 59
Query: 61 XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYW--QSP 116
+L A +WG ++NHG+ + E+VKK EFF+LS+EEK+KY Q+
Sbjct: 60 EKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQAT 119
Query: 117 EDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVXXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
++G+G + +L+W D FF P + Y+ L+ L
Sbjct: 120 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 179
Query: 177 AMNLILKMGKVLNIKDEEMKN---FFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALT 233
A + + L ++ + ++ E L ++NYYP CPQPE +G+ H+D ALT
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 234 ILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQER 293
+L N V GLQ+ +G W+ +P++ + +IGD +EI++NGKY+SI HR VN + R
Sbjct: 240 FILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 294 LSVGTFYYTRYDGEVY-PASSLISEKAPALFRRLTVEEYLSGR-FARE 339
+S F D V P +S ++PA F T +++ + F +E
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 134/254 (52%), Gaps = 10/254 (3%)
Query: 69 LDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVV 128
+ AC+ WGFF++VNHG+ + V+K + E++ K + + LEG V
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG-----VQ 78
Query: 129 SEEQKLDWGDLFFMTTLPVXXXXXXXXXXXXXXXXDTLEVYSMELKSLAMNLILKMGKVL 188
+E DW FF+ LP+ + ++ L+ LA L+ + + L
Sbjct: 79 AEVTDXDWESTFFLKHLPISNISEVPDLDEEYR--EVXRDFAKRLEKLAEELLDLLCENL 136
Query: 189 NIKDEEMKNFF--ENGLQV-MRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQ 245
++ +KN F G +++ YPPCP+P+ + GL H+D + +L Q ++V GLQ
Sbjct: 137 GLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ 196
Query: 246 IKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYD 305
+ KDG WI V P ++ +VN+GD +E+ITNGKY+S+ HRV R S+ +FY D
Sbjct: 197 LLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSD 256
Query: 306 GEVYPASSLISEKA 319
+YPA +L+ ++A
Sbjct: 257 AVIYPAPALVEKEA 270
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 20/290 (6%)
Query: 68 KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFV 127
+L ++ + +GF + ++ + A ++ FF L +E KK+Y G+ F
Sbjct: 25 ELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPFG 83
Query: 128 VSEEQKLDWGDL--FFMTTLPVXXXXXXXXXXXXXXXXDTLEVYSMELKSLAMNLILKMG 185
V + D DL F+ + + + ++ L +L G
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 186 KVLNIKDEEMK---NFF----ENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQI 238
KVL +K +FF ++G V+R+ +YPP P+ V H D +T+LL
Sbjct: 144 KVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGA 203
Query: 239 NEVEGLQI-KKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVG 297
E GL++ +DG W+P+ P P ++NIGD +E +TN S HRV VN ER V
Sbjct: 204 EE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRV-VNPPPERRGVP 261
Query: 298 T-----FYYTRYDGEVYPASSLISEKAPALF-RRLTVEEYLSGRFARELR 341
F + D E+ + ++ + P + +T +E+L R RE++
Sbjct: 262 RYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRL-REIK 310
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 118/289 (40%), Gaps = 52/289 (17%)
Query: 72 ACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEE 131
+ +E GF + NH + +E++ E FFN E K ++ + E +GF A +SE
Sbjct: 21 SLRETGFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRETHDGFFPA-SISET 77
Query: 132 QKLDWGDLFFMTTLPVXXXXXXXXXXXXXXXXDTLEV----YSMELKSLAMNLILKMGKV 187
K V D+L Y + +LA L + +
Sbjct: 78 AK----------GHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASEL---LEWI 124
Query: 188 LNIKDEEMKNFFENGL---------QVMRMNYYPPCPQPEK--VVGLTPHSDGPALTILL 236
+E+K F L ++R+ +YPP E+ + H D +T+L
Sbjct: 125 ETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLP 184
Query: 237 QINEVEGLQIK-KDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVT----VNSVQ 291
NE GLQ+K KDG W+ V I+NIGD ++ ++G + S HRV + +
Sbjct: 185 TANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTK 243
Query: 292 ERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFAREL 340
R+S+ F ++P S++ L R T + YL R REL
Sbjct: 244 SRISLPLF--------LHPHPSVV------LSERYTADSYLXERL-REL 277
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 41/275 (14%)
Query: 68 KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEK-----KKYWQSPEDLEGF 122
++D+A ++ GFF VNHG++ L + KE H +++ EEK + Y + +D
Sbjct: 31 QIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEEKWDLAIRAYNKEHQDQVRA 88
Query: 123 GQAFVVSEEQKLDWGDLF----------FMTTLPVXXXXXXXXXXXXXXXXDTLEVYSME 172
G + ++ ++ P D E Y +
Sbjct: 89 GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWD 148
Query: 173 LKSLAMNLILKMGKVLNIKDEEMKNFF------ENGLQVMRMNYYPPC-PQPEKVVGLTP 225
+ L+ L+ G L + EE NFF ++ L + + YP P PE +
Sbjct: 149 VFGLSSALL--KGYALALGKEE--NFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAA 204
Query: 226 ---------HSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNG 276
H D +T+L Q N V+ LQ++ + + +++N G M +TN
Sbjct: 205 DGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNN 263
Query: 277 KYRSIEHRVT-VNSVQERLSVGTFYYTRYDGEVYP 310
Y++ HRV VN+ ER S+ F YD + P
Sbjct: 264 YYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 41/275 (14%)
Query: 68 KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEK-----KKYWQSPEDLEGF 122
++D+A ++ GFF VNHG++ L + KE H +++ EEK + Y + +D
Sbjct: 31 QIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSITPEEKWDLAIRAYNKEHQDQVRA 88
Query: 123 GQAFVVSEEQKLDWGDLF----------FMTTLPVXXXXXXXXXXXXXXXXDTLEVYSME 172
G + ++ ++ P D E Y +
Sbjct: 89 GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWD 148
Query: 173 LKSLAMNLILKMGKVLNIKDEEMKNFF------ENGLQVMRMNYYPPC-PQPEKVVGLTP 225
+ L+ L+ G L + EE NFF ++ L + + YP P PE +
Sbjct: 149 VFGLSSALL--KGYALALGKEE--NFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAA 204
Query: 226 ---------HSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNG 276
H D +T+L Q N V+ LQ++ + + +++N G M +TN
Sbjct: 205 DGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNN 263
Query: 277 KYRSIEHRVT-VNSVQERLSVGTFYYTRYDGEVYP 310
Y++ HRV VN+ ER S+ F YD + P
Sbjct: 264 YYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGPALTILLQINEVEG---LQIKKDGVWIPVTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFIVNIGDIMEIITNGKYRSIEHRVTV 287
P+A +V G I ++T G+ ++ H V
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGPALTILLQINEVEG---LQIKKDGVWIPVTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFIVNIGDIMEIITNGKYRSIEHRVTV 287
P+A +V G I ++T G+ ++ H V
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGPALTILLQINEVEG---LQIKKDGVWIPVTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFIVNIGDIMEIITNGKYRSIEHRVTV 287
P+A +V G I ++T G+ ++ H V
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGPALTILLQINEVEG---LQIKKDGVWIPVTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFIVNIGDIMEIITNGKYRSIEHRVTV 287
P+A +V G I ++T G+ ++ H V
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGPALTILLQINEVEG---LQIKKDGVWIPVTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + G + +
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 237
Query: 258 LPNAFIVNIGDIMEIITNGKYRSIEHRVTV 287
P+A +V G I ++T G+ ++ H V
Sbjct: 238 RPDAVLVFCGAIATLVTGGQVKAPRHHVAA 267
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In Complex
With Galnac
Length = 444
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 235 LLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEI--ITNGKYRSIEHRVTVN 288
++ NE L + W +TPL I G + EI TNGK+++ ++ +N
Sbjct: 386 CIKRNEAFPLDVYDLATWYSITPLSEKSIAENGAVQEIPDFTNGKWKNAKNTFAIN 441
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From
Archaeoglobus Fulgidus
Length = 256
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 218 EKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGK 277
E + + P G A++ L V + ++DG WI V +P+ ++ D++ + G+
Sbjct: 187 EIAIKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGE 246
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome
Protein Orthologue From Archaeoglobus Fulgidus
Length = 240
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 216 QPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITN 275
+ E + + P G A++ L V + ++DG WI V +P+ ++ D++ +
Sbjct: 169 EXEIAIKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVXRIPSGXYGDLXDLLGKVAK 228
Query: 276 GK 277
G+
Sbjct: 229 GE 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,845,305
Number of Sequences: 62578
Number of extensions: 384569
Number of successful extensions: 1005
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 26
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)