BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035887
(886 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL 572
R ++L NK+ +S L L L N+L ++ + FD + +LK L L +N+ L L
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSL 124
Query: 573 PSGV-SKLVSLQYLNLSETSIKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCSFSGL 630
P GV KL +L YLNL+ ++ LP + LT L L+L Y + LQ +P + + L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQL 183
Query: 631 EVLRM 635
+ LR+
Sbjct: 184 KDLRL 188
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 469 KMHDVIRDMALWIACEVEKENENFLVSAGVELTKPPE--VRKWEDRRKISLMRNKIVILS 526
K+HD I+ E N +L+ G +L P K + +++ L+ N++ L
Sbjct: 74 KLHD--------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 527 KP--PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQ 583
L L L N+L ++ FD + +L L+LS N+ L LP GV KL L+
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLK 184
Query: 584 YLNLSETSIKELP 596
L L + +K +P
Sbjct: 185 DLRLYQNQLKSVP 197
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYL 585
L L L N+L ++ FD + LK L L +N+ L +P GV +L SLQY+
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 210
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 511 DRRKISLMRNKIVILSKPP--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRS 568
D +K+ L NK+ L +L L+L N+L T+ + F + +L+ L ++ N+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK- 96
Query: 569 LSQLPSGV-SKLVSLQYLNLSETSIKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCS 626
L LP GV +LV+L L L +K LP + +LTKL L+L Y LQ +P+ +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDK 155
Query: 627 FSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVE-ELITLEHLNVLSVTLKSFGALQRL 683
+ L+ LR+ + R V G + L E + + L++ + V +F +L++L
Sbjct: 156 LTSLKELRLYNNQLKR------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 515 ISLMRNKIVILSKPP----ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLS 570
+ L RN++ L PP + +L L LG N L ++ FD + SLK L L N+ L
Sbjct: 114 LRLDRNQLKSL--PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LK 170
Query: 571 QLPSGV-SKLVSLQYLNLSETSIKELPH-ELKALTKLKCLNLE 611
++P G KL L+ L L +K +P +L KLK L L+
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 526 SKPPACPRLLT-LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQ 583
S P P T L L N L ++ + FD + SL L L N+ L LP+GV +KL SL
Sbjct: 21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLT 79
Query: 584 YLNLSETSIKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRM 635
YLNLS ++ LP+ + LT+LK L L T LQ +P + + L+ LR+
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDLRL 131
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 534 LLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSI 592
L L+LG N+L ++ + F+ + SL LNLS N+ L LP+GV KL L+ L L+ +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL 112
Query: 593 KELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLD 637
+ LP + LT+LK L L Y L+ +P + + L+ + + D
Sbjct: 113 QSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYIWLHD 157
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYL 585
+L L L N+L ++ FD + LK L L +N+ L +P GV +L SLQY+
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 153
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 511 DRRKISLMRNKIVILSKPP--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRS 568
D K+ L + LS +L L L N+L T+S+ FD + L L L+ N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ- 94
Query: 569 LSQLPSGV-SKLVSLQYLNLSETSIKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCS 626
L+ LP GV L L L L +K LP + LTKLK L L T LQ IP
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDK 153
Query: 627 FSGLEVLRM 635
+ L+ L +
Sbjct: 154 LTNLQTLSL 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIKEL 595
L+LG N+L ++ S FD + LK L L+ N+ L +P+G KL +LQ L+LS ++ +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 596 PH-ELKALTKLKCLNL 610
PH L KL+ + L
Sbjct: 171 PHGAFDRLGKLQTITL 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 511 DRRKISLMRNKIVILSKPP--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRS 568
D K+ L + LS +L L L N+L T+S+ FD + L L L+ N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ- 94
Query: 569 LSQLPSGV-SKLVSLQYLNLSETSIKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCS 626
L+ LP GV L L L L +K LP + LTKLK L L T LQ IP
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDK 153
Query: 627 FSGLEVLRM 635
+ L+ L +
Sbjct: 154 LTNLQTLSL 162
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIKEL 595
L+LG N+L ++ S FD + LK L L+ N+ L +P+G KL +LQ L+LS ++ +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 596 PH-ELKALTKLKCLNL 610
PH L KL+ + L
Sbjct: 171 PHGAFDRLGKLQTITL 186
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETS 591
+L L+L N +++I S F+ +PSL L+L + + L + G L +L+YLNL +
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207
Query: 592 IKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQF 651
IK++P L L L+ L + + + P SF GL L+ L S+ + F
Sbjct: 208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERNAF 262
Query: 652 GGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHS 691
G LVE + L H N+ S+ F L+ L+ H+
Sbjct: 263 DGLASLVE--LNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSI 592
+L L LG N+L + S FD + LK L + N+ L++LP G+ +L L +L L + +
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL 147
Query: 593 KELPHELKALTKLKCLNLEY 612
K +PH A +L L Y
Sbjct: 148 KSIPH--GAFDRLSSLTHAY 165
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIKEL 595
L+LG N+L + FD + L VL+L N+ L+ LPS V +LV L+ L + + EL
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 596 PHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGL 630
P ++ LT L L L+ + L+ IP S L
Sbjct: 128 PRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSL 161
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLS 570
D R ++ V LSK L L+L N +++I S F+ +PSL+ L+L + + LS
Sbjct: 121 DNRLTTIPNGAFVYLSK------LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 571 QLPSGV-SKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSG 629
+ G L +L+YLNL+ +++E+P+ L L KL L+L P SF G
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPG----SFQG 229
Query: 630 LEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRL 683
L L+ L S+ + F + LVE I L H N+ + F L L
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVE--INLAHNNLTLLPHDLFTPLHHL 281
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 532 PRLLTLFLGINRLDTISSDFFDFM------------------------PSLKVLNLSKNR 567
P L TL L NRL T+ + F+++ PSL+ L+L + +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 568 SLSQLP-SGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCS 626
L + + LV+L+YLNL ++K++P+ L AL +L+ L L R P S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPG----S 197
Query: 627 FSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRL 683
F GL LR L +++ + F + L E + L H N++S+ F L RL
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE--LNLSHNNLMSLPHDLFTPLHRL 252
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 532 PRLLTLFLGINRLDTISSDFFDFM------------------------PSLKVLNLSKNR 567
P L TL L NRL T+ + F+++ PSL+ L+L + +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 568 SLSQLP-SGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCS 626
L + + LV+L+YLNL ++K++P+ L AL +L+ L L R P S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPG----S 197
Query: 627 FSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRL 683
F GL LR L +++ + F + L E + L H N++S+ F L RL
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE--LNLSHNNLMSLPHDLFTPLHRL 252
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSI 592
RL L L NRLD I F + SL+ L L + + + L SL+ LNLS ++
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 593 KELPHEL-KALTKLKCLNLEY 612
LPH+L L +L+ ++L +
Sbjct: 239 MSLPHDLFTPLHRLERVHLNH 259
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL 572
R ++L NK+ +S L L L N+L ++ + FD + +LK L L +N+ L L
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSL 124
Query: 573 PSGV-SKLVSLQYLNLSETSIKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCSFSGL 630
P GV KL +L YL L ++ LP + LT L L+L+ + LQ +P + + L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQL 183
Query: 631 EVLRMLD 637
+ L + D
Sbjct: 184 KQLSLND 190
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 469 KMHDVIRDMALWIACEVEKENENFLVSAGVELTKPPE--VRKWEDRRKISLMRNKIVILS 526
K+HD I+ E N +L+ G +L P K + +++ L+ N++ L
Sbjct: 74 KLHD--------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 527 KP--PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQ 583
L L+L N+L ++ FD + +L L+L N+ L LP GV KL L+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQLK 184
Query: 584 YLNLSETSIKELP----HELKALTKLKCLN 609
L+L++ +K +P L +LT + LN
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 513 RKISLMRNKIVILSKPP--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLS 570
+ + L NKI + AC L L L +R++TI D F + SL+ L+LS N S
Sbjct: 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88
Query: 571 QLPSGVSKLVSLQYLNL-----SETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLC 625
S L SL+YLNL + L L L L+ N+E +++I L
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148
Query: 626 SFSGLEV 632
S + LE+
Sbjct: 149 SLNELEI 155
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 513 RKISLMRNKIVILSKPP--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLS 570
+ + L NKI + AC L L L +R++TI D F + SL+ L+LS N S
Sbjct: 55 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 114
Query: 571 QLPSGVSKLVSLQYLNL-----SETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLC 625
S L SL+YLNL + L L L L+ N+E +++I L
Sbjct: 115 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 174
Query: 626 SFSGLEV 632
S + LE+
Sbjct: 175 SLNELEI 181
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIKEL 595
L+L NR+ + FD + L L+L N+ L+ LP+GV KL L L+L++ +K +
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 596 PH----ELKALTKLKCLN 609
P L++LT + LN
Sbjct: 94 PRGAFDNLRSLTHIWLLN 111
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 544 LDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIKELP--HELK 600
L+ I +D F +P L + + K +L + P L +LQYL +S T IK LP H++
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Query: 601 ALTKLKCLNLEYTRYLQKIPRQLLCSFSGL 630
+L K+ L+++ + I R SF GL
Sbjct: 127 SLQKV-LLDIQDNINIHTIERN---SFVGL 152
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 25/176 (14%)
Query: 462 EVGSDYVKMHDVIRDMA---LWIACEVEKE--NENFLVSAGVELTKPPEVRKWEDRRKI- 515
+V S+ K+H++ + A L+I E + N +L+ + + P+V K +K+
Sbjct: 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132
Query: 516 ----------SLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSK 565
++ RN V LS + L+L N + I + F+ L LNLS
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFES-----VILWLNKNGIQEIHNCAFNGT-QLDELNLSD 186
Query: 566 NRSLSQLPSGVSKLVSLQY-LNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIP 620
N +L +LP+ V S L++S T I LP L LK L T L+K+P
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLP 240
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 544 LDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIKELP--HELK 600
L+ I +D F +P L + + K +L + P L +LQYL +S T IK LP H++
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Query: 601 ALTKLKCLNLEYTRYLQKIPRQLLCSFSGL 630
+L K+ L+++ + I R SF GL
Sbjct: 127 SLQKV-LLDIQDNINIHTIERN---SFVGL 152
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 25/176 (14%)
Query: 462 EVGSDYVKMHDVIRDMA---LWIACEVEKE--NENFLVSAGVELTKPPEVRKWEDRRKI- 515
+V S+ K+H++ + A L+I E + N +L+ + + P+V K +K+
Sbjct: 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132
Query: 516 ----------SLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSK 565
++ RN V LS + L+L N + I + F+ L LNLS
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFES-----VILWLNKNGIQEIHNSAFNGT-QLDELNLSD 186
Query: 566 NRSLSQLPSGVSKLVSLQY-LNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIP 620
N +L +LP+ V S L++S T I LP L LK L T L+K+P
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLP 240
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIKEL 595
L+L N++ + FD + L L+L N+ L+ LP+GV KL L L+L++ +K +
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 596 PH----ELKALTKLKCLN 609
P LK+LT + LN
Sbjct: 102 PRGAFDNLKSLTHIWLLN 119
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIKEL 595
L+L N++ + FD + L L+L N+ L+ LP+GV KL L L+L++ +K +
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 596 PH----ELKALTKLKCLN 609
P LK+LT + LN
Sbjct: 94 PRGAFDNLKSLTHIWLLN 111
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 520 NKIVILSKPPACPRLLT-LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-S 577
N + S P P T L L N+L ++ FD + L L+LS+N+ + LP GV
Sbjct: 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFD 73
Query: 578 KLVSLQYLNLSETSIKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCSFSGLE 631
KL L L L E ++ LP+ + LT+LK L L+ T L+ +P + + L+
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQ 127
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNL 587
P ++L L+ IN++ + FD + L LNL+ N+ L+ LP GV KL L +L L
Sbjct: 39 PTTTQVLHLY--INQITKLEPGVFDSLTQLTYLNLAVNQ-LTALPVGVFDKLTKLTHLAL 95
Query: 588 SETSIKELP----HELKALTKLKCLN 609
+K +P LK+LT + N
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFN 121
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 481 IACEVEKENENFLVSAGVELTKPPEVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLG 540
+ + E E+ LV AG ++ + + ++L N+I +S +L L++G
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG 96
Query: 541 INRLDTISS---------------DFFDFMPSLKV-----LNLSKNRSLSQLPSGVSKLV 580
N++ IS+ + D P + LNL N +LS L S +S
Sbjct: 97 TNKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDL-SPLSNXT 155
Query: 581 SLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSF 627
L YL ++E+ +K++ + LT L L+L Y + P L S
Sbjct: 156 GLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISPLASLTSL 201
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 534 LLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK 593
L TL L NRL I F + +L L++S+N+ + L L +L+ L + + +
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 594 ELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRM 635
+ H L L+ L LE L IP + L GL VLR+
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRL 183
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 75/200 (37%), Gaps = 32/200 (16%)
Query: 569 LSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFS 628
L Q P +L LQ+ + + ELP + L+ L L R L S +
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPL-----RALPASIA 147
Query: 629 GLEVLRMLDCGYSRKIAEDSVQFGGSEILVEE--LITLEHLNVLSVTLKSFGA----LQR 682
L LR L ++ E ++ E L+ L+ L + ++S A LQ
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN 207
Query: 683 LLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTT 742
L S + +S AL +I L L +LD CT+L NY +
Sbjct: 208 LKSLKIRNSPLSALG------------PAIHHLPKLEELDLRGCTALR----NYPPIFGG 251
Query: 743 REPYGFNSLQRVTIACCSRL 762
R P L+R+ + CS L
Sbjct: 252 RAP-----LKRLILKDCSNL 266
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 711 SIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVF 770
SIA L L +L C L L A + E G +LQ + + +
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204
Query: 771 APNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLK---IIFRNALPF 827
NLK + I + +SA LG P ++ KL+ L L+ T L+ IF P
Sbjct: 205 LQNLKSLKIR-----NSPLSA--LG--PAIHHLPKLEELDLRGCTALRNYPPIFGGRAP- 254
Query: 828 PNLLELFVSECPNLKKLPLDIN 849
L L + +C NL LPLDI+
Sbjct: 255 --LKRLILKDCSNLLTLPLDIH 274
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 547 ISSDFF--DFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTK 604
IS++ F DF+ L + SL++LP+ + L +L+ L+LS + LP EL +
Sbjct: 239 ISANIFKYDFLTRLYL----NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS--- 291
Query: 605 LKCLNLEYTRYLQKIPRQLLCSFSGLEVLRML 636
C L+Y + + L F L L+ L
Sbjct: 292 --CFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 534 LLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK 593
L L+L N L + ++ + + +L+VL+LS NR L+ LP+ + L+Y + +
Sbjct: 249 LTRLYLNGNSLTELPAEIKN-LSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVT 306
Query: 594 ELPHELKALTKLKCLNLE 611
LP E L L+ L +E
Sbjct: 307 TLPWEFGNLCNLQFLGVE 324
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 555 MPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTR 614
+ +L++ N+S N + K L L L+ S+ ELP E+K L+ L+ L+L + R
Sbjct: 231 LSNLQIFNISAN---------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR 281
Query: 615 YLQKIPRQLLCSF 627
L +P +L F
Sbjct: 282 -LTSLPAELGSCF 293
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETS 591
P L L N++ I F + +L L L N+ P + LV L+ L LS+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 592 IKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639
+KELP ++ K L +L+ E T+ + + F+GL + +++ G
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSV-------FNGLNQMIVVELG 153
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETS 591
P L L N++ I F + +L L L N+ P + LV L+ L LS+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 592 IKELPHEL-KALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639
+KELP ++ K L +L+ E T+ + + F+GL + +++ G
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSV-------FNGLNQMIVVELG 153
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 332 DIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLR 375
D+PE A ++ KEC G PL + G + + P W Y ++ L+
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 346
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 470 MHDVIRDMALWIACEVEKENENFLVSAGVELTKPPEVRKWEDRRKISLMRNKIVILSKPP 529
+ ++ RD+ L + +NE +S+ + P + K E L RN++ + +P
Sbjct: 20 LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLE------LKRNQLTGI-EPN 72
Query: 530 A---CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLN 586
A + L LG N++ IS+ F + LK LNL N+ +P L SL LN
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 587 LS 588
L+
Sbjct: 133 LA 134
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 332 DIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLR 375
D+PE A ++ KEC G PL + G + + P W Y ++ L+
Sbjct: 311 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 352
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 22/174 (12%)
Query: 513 RKISLMRNKIVILSKPPAC----PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRS 568
+ +SL N+++ S+ L L L N L + + F ++PSL+ L+L N
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 569 LSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQ-------KIPR 621
P L +L+YL+L K+ L + + + ++ +YL+ IP
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKRAFTKQ-SVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPS 343
Query: 622 QLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEE-LITLEHLNVLSVTL 674
+F+GL L+ L S F + L E ++L H +L++ L
Sbjct: 344 TKSNTFTGLVSLKYLSL---------SKTFTSLQTLTNETFVSLAHSPLLTLNL 388
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETS 591
P+L +L+LG N++ I+ + L L+L N+ +P +++L LQ L LS+
Sbjct: 132 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNH 187
Query: 592 IKELPHELKALTKLKCLNLEYTRYLQK 618
I +L L+ L L L L L K
Sbjct: 188 ISDL-RALRGLKNLDVLELFSQEALNK 213
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 531 CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNR----SLSQLPSGVSKLVSLQYL 585
P+L TL + N L+ I D F SL+ L LS NR LS +PS VS L
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 534 LLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQ 583
L ++ G N+L + F MP LK LNL+ N+ L +P G+ +L SLQ
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ-LKSVPDGIFDRLTSLQ 221
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 544 LDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIKELP 596
++ + S FD + +L+ + N+ L Q+P G+ K+ L+ LNL+ +K +P
Sbjct: 158 IEEMPSHLFDDLENLESIEFGSNK-LRQMPRGIFGKMPKLKQLNLASNQLKSVP 210
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 507 RKWEDRRKISLMRNKIVILSKPP--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLS 564
+K RKI+ NKI + + + + L NRL+ + F + SLK L L
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113
Query: 565 KNRSLSQLPSGVSKLVSLQYLNLSETSIKEL-PHELKALTKLKCLNL 610
NR L S++ L+L + I + P L L LNL
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNR--SLSQLPSGVSKLVSLQYLNLSET 590
+L L + NR+ + F F L+ L+LS N+ +S P+ V+L++L+LS
Sbjct: 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT-----VNLKHLDLSFN 100
Query: 591 SIKELP--HELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDS 648
+ LP E +++LK L L T +L+K + + +VL +L Y K +
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLS-TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159
Query: 649 VQFGGSEILVEELITLEHLN-VLSVTLKSFGALQ 681
+Q +E L T + + +L V++K+ L+
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 510 EDRRKISLMRNKIVILSKPPACPRLLTLF-LGINRLDTISSDFFDFMPSLKVLNLSKNRS 568
D ++ L N+ ++ K + + LTL L NR+ T+S+ F M L L LS NR
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 569 LSQLPSGVSKLVSLQYLNLSETSIKELP----HELKALTKL 605
P L SL+ L+L I +P ++L AL+ L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 554 FMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK-ELPHELKALTKLKCLNLEY 612
++ +L+ L L N ++PSG+S +L +++LS + E+P + L L L L
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 613 TRYLQKIPRQL 623
+ IP +L
Sbjct: 521 NSFSGNIPAEL 531
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 558 LKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK-ELPHELK-ALTKLKCLNLEYTRY 615
LK+LN+S N+ + +P L SLQYL+L+E E+P L A L L+L +
Sbjct: 246 LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 616 LQKIP 620
+P
Sbjct: 304 YGAVP 308
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 554 FMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK-ELPHELKALTKLKCLNLEY 612
++ +L+ L L N ++PSG+S +L +++LS + E+P + L L L L
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 613 TRYLQKIPRQL 623
+ IP +L
Sbjct: 524 NSFSGNIPAEL 534
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 558 LKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK-ELPHELK-ALTKLKCLNLEYTRY 615
LK+LN+S N+ + +P L SLQYL+L+E E+P L A L L+L +
Sbjct: 249 LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 616 LQKIP 620
+P
Sbjct: 307 YGAVP 311
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 260 DDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVC-GLMETQKKFKVEC-LGDNEAWEL 317
DD+W+ L N +I+ TTR ++V +M + VE LG + E+
Sbjct: 243 DDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEI 294
Query: 318 FLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLR 375
V + D+P A ++ KEC G PL + G + + P W Y + L+
Sbjct: 295 LSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 346
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 531 CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNR----SLSQLPSGVSKLVSLQYL 585
P+L TL + N L+ I D F SL+ L LS NR LS +PS VS L
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 332 DIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLR 375
D+P A ++ KEC G PL + G + + P W Y + L+
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 353
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 651 FGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCE 702
FGG ++L E+L L HLN+ LK L+ L + L ++L+L CE
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL----KSLDLFNCE 131
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 528 PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKN--RSLSQL------------- 572
P L +L L N L+ ISS+ F +P+L+ L+LS N +L +
Sbjct: 60 PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119
Query: 573 ---------PSGVSKLVSLQYLNLSETSIKELPHEL----KALTKLKCLNLEYTRYLQKI 619
+ + LQ L LS+ I P EL L KL L+L + L+K+
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKL 178
Query: 620 P 620
P
Sbjct: 179 P 179
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETS 591
P+L +L+LG N++ I+ + L L+L N+ +P ++ L LQ L LS+
Sbjct: 131 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186
Query: 592 IKELPHELKALTKLKCLNL 610
I +L+AL LK L++
Sbjct: 187 IS----DLRALAGLKNLDV 201
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSETSIKEL 595
L+L N L T+ P L+ L+L+ N+ L++LP+G ++ L +L L L E S+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 596 P 596
P
Sbjct: 188 P 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 537 LFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSETSIKEL 595
L+L N L T+ P L+ L+L+ N+ L++LP+G ++ L +L L L E S+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 596 P 596
P
Sbjct: 188 P 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,734,959
Number of Sequences: 62578
Number of extensions: 986344
Number of successful extensions: 2325
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2190
Number of HSP's gapped (non-prelim): 163
length of query: 886
length of database: 14,973,337
effective HSP length: 107
effective length of query: 779
effective length of database: 8,277,491
effective search space: 6448165489
effective search space used: 6448165489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)