Query 035887
Match_columns 886
No_of_seqs 474 out of 4080
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-103 4E-108 921.7 50.0 840 12-879 6-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.7E-66 1.7E-70 639.5 52.2 641 154-847 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.5E-45 1.2E-49 389.5 18.8 277 159-438 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.8 2.6E-23 5.7E-28 220.5 -4.4 324 491-845 35-379 (1255)
5 PLN00113 leucine-rich repeat r 99.8 7E-21 1.5E-25 238.1 15.9 327 508-861 116-462 (968)
6 PLN03210 Resistant to P. syrin 99.8 4.4E-20 9.4E-25 230.8 18.1 306 529-865 555-907 (1153)
7 PLN00113 leucine-rich repeat r 99.8 4.5E-20 9.8E-25 230.9 17.7 340 509-861 139-509 (968)
8 KOG0444 Cytoskeletal regulator 99.8 9.6E-21 2.1E-25 201.3 -3.3 301 508-834 76-392 (1255)
9 KOG4194 Membrane glycoprotein 99.8 5.8E-20 1.3E-24 194.5 1.2 327 507-859 99-447 (873)
10 KOG4194 Membrane glycoprotein 99.7 1.3E-17 2.8E-22 176.9 0.8 278 508-821 147-432 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 5.9E-17 1.3E-21 164.8 -3.4 320 503-839 199-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 3.7E-17 7.9E-22 166.3 -10.2 261 533-860 46-306 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 1.4E-13 3E-18 159.9 14.5 265 478-814 191-455 (788)
14 KOG0618 Serine/threonine phosp 99.5 4.7E-16 1E-20 174.2 -5.6 65 507-573 65-130 (1081)
15 KOG4658 Apoptotic ATPase [Sign 99.5 1.3E-14 2.8E-19 172.3 5.5 305 508-847 543-866 (889)
16 PRK15387 E3 ubiquitin-protein 99.4 7.6E-13 1.7E-17 153.8 12.6 254 512-839 203-456 (788)
17 KOG0617 Ras suppressor protein 99.4 2.6E-14 5.7E-19 128.9 -2.8 160 502-679 25-187 (264)
18 KOG0618 Serine/threonine phosp 99.4 1.8E-13 3.9E-18 153.9 1.7 296 512-846 23-327 (1081)
19 PRK04841 transcriptional regul 99.3 1.3E-10 2.9E-15 145.0 26.8 287 152-482 12-332 (903)
20 PRK00411 cdc6 cell division co 99.3 3.6E-10 7.7E-15 126.5 26.4 290 153-463 29-357 (394)
21 PRK15370 E3 ubiquitin-protein 99.3 3.7E-12 7.9E-17 149.3 9.2 242 515-814 183-425 (754)
22 PRK15370 E3 ubiquitin-protein 99.3 3.6E-12 7.8E-17 149.4 8.3 223 510-783 199-426 (754)
23 KOG0617 Ras suppressor protein 99.3 1.2E-13 2.7E-18 124.6 -5.2 139 523-678 24-163 (264)
24 TIGR03015 pepcterm_ATPase puta 99.2 2.6E-09 5.7E-14 112.8 23.8 181 173-358 41-242 (269)
25 TIGR02928 orc1/cdc6 family rep 99.2 8.3E-09 1.8E-13 114.2 27.9 294 154-464 15-350 (365)
26 PF01637 Arch_ATPase: Archaeal 99.2 1.2E-10 2.6E-15 120.4 11.4 193 156-353 1-233 (234)
27 KOG4237 Extracellular matrix p 99.1 5.7E-12 1.2E-16 128.9 -3.3 106 533-640 68-176 (498)
28 PRK00080 ruvB Holliday junctio 99.1 5.3E-09 1.1E-13 113.2 18.4 269 154-464 25-310 (328)
29 TIGR00635 ruvB Holliday juncti 99.0 6.2E-08 1.4E-12 104.2 23.8 270 154-464 4-289 (305)
30 cd00116 LRR_RI Leucine-rich re 99.0 9.6E-11 2.1E-15 127.4 1.3 35 747-782 219-260 (319)
31 PF05729 NACHT: NACHT domain 99.0 2.8E-09 6.1E-14 103.5 10.7 142 176-322 1-163 (166)
32 PF14580 LRR_9: Leucine-rich r 99.0 6.9E-10 1.5E-14 106.0 5.9 118 520-642 7-127 (175)
33 COG3899 Predicted ATPase [Gene 98.9 1.6E-08 3.4E-13 121.4 17.8 303 156-481 2-385 (849)
34 COG2909 MalT ATP-dependent tra 98.9 1E-07 2.2E-12 108.2 22.1 284 155-481 20-337 (894)
35 COG2256 MGS1 ATPase related to 98.9 1E-07 2.2E-12 99.3 19.4 218 153-401 29-265 (436)
36 PRK06893 DNA replication initi 98.9 2.8E-08 6.1E-13 101.3 13.3 151 174-353 38-202 (229)
37 cd00116 LRR_RI Leucine-rich re 98.8 8.6E-10 1.9E-14 119.9 1.8 237 531-783 22-289 (319)
38 PF14580 LRR_9: Leucine-rich r 98.8 3.3E-09 7.1E-14 101.4 4.5 126 509-638 18-150 (175)
39 PTZ00112 origin recognition co 98.8 4.6E-07 1E-11 103.6 21.3 205 153-358 754-986 (1164)
40 KOG4341 F-box protein containi 98.8 4.2E-10 9.1E-15 116.5 -3.3 293 532-846 138-444 (483)
41 KOG4237 Extracellular matrix p 98.8 8.4E-10 1.8E-14 113.3 -1.5 128 511-639 68-199 (498)
42 TIGR03420 DnaA_homol_Hda DnaA 98.7 1E-07 2.2E-12 97.7 12.8 168 159-355 22-202 (226)
43 PRK13342 recombination factor 98.7 5.7E-07 1.2E-11 100.5 19.3 175 154-355 12-197 (413)
44 KOG0532 Leucine-rich repeat (L 98.7 7.7E-10 1.7E-14 118.6 -4.3 151 508-678 96-247 (722)
45 KOG3207 Beta-tubulin folding c 98.6 8.5E-09 1.8E-13 107.6 1.7 89 691-782 246-336 (505)
46 KOG2028 ATPase related to the 98.6 6.3E-07 1.4E-11 91.4 14.3 163 166-350 153-332 (554)
47 COG1474 CDC6 Cdc6-related prot 98.6 3.2E-06 6.9E-11 91.5 19.3 197 154-353 17-237 (366)
48 PF13173 AAA_14: AAA domain 98.6 1.3E-07 2.8E-12 87.0 7.3 120 175-314 2-127 (128)
49 KOG0532 Leucine-rich repeat (L 98.6 9.3E-09 2E-13 110.5 -0.5 131 506-641 117-247 (722)
50 PRK08727 hypothetical protein; 98.6 1.1E-06 2.4E-11 89.8 14.7 169 154-351 20-201 (233)
51 TIGR02903 spore_lon_C ATP-depe 98.6 1.6E-05 3.4E-10 92.7 25.5 199 154-357 154-398 (615)
52 KOG4341 F-box protein containi 98.5 3.7E-09 8E-14 109.7 -4.7 89 748-843 319-416 (483)
53 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.3E-13 100.3 -0.3 132 505-642 279-413 (490)
54 PRK07003 DNA polymerase III su 98.5 4.7E-06 1E-10 95.3 19.3 182 154-355 16-222 (830)
55 PRK05564 DNA polymerase III su 98.5 4.2E-06 9E-11 90.1 17.2 175 155-352 5-188 (313)
56 PRK12402 replication factor C 98.5 2.6E-06 5.7E-11 93.2 15.9 193 154-352 15-224 (337)
57 PRK08084 DNA replication initi 98.5 2.2E-06 4.8E-11 87.7 13.9 171 153-352 22-207 (235)
58 cd00009 AAA The AAA+ (ATPases 98.5 1.5E-06 3.2E-11 82.3 11.7 124 157-293 1-131 (151)
59 PRK04195 replication factor C 98.5 8.7E-06 1.9E-10 92.9 19.7 243 154-438 14-272 (482)
60 cd01128 rho_factor Transcripti 98.5 3.5E-07 7.5E-12 93.4 7.4 90 173-264 14-114 (249)
61 PRK14949 DNA polymerase III su 98.4 5.7E-06 1.2E-10 96.6 17.4 180 154-354 16-220 (944)
62 PLN03025 replication factor C 98.4 5.6E-06 1.2E-10 89.2 16.0 180 154-351 13-197 (319)
63 PRK09087 hypothetical protein; 98.4 6.8E-06 1.5E-10 83.2 15.2 139 174-353 43-194 (226)
64 PTZ00202 tuzin; Provisional 98.4 1E-05 2.2E-10 86.2 16.7 159 153-322 261-434 (550)
65 KOG3207 Beta-tubulin folding c 98.4 7.2E-08 1.6E-12 100.8 0.7 179 508-702 119-312 (505)
66 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6E-12 72.2 3.8 58 533-591 2-60 (61)
67 PRK00440 rfc replication facto 98.4 1.1E-05 2.4E-10 87.6 17.7 179 154-351 17-200 (319)
68 PRK14960 DNA polymerase III su 98.4 7.8E-06 1.7E-10 92.6 16.6 179 154-352 15-217 (702)
69 PRK14961 DNA polymerase III su 98.4 1.4E-05 3.1E-10 87.5 18.1 178 154-351 16-217 (363)
70 PF13401 AAA_22: AAA domain; P 98.4 7.2E-07 1.6E-11 82.7 6.8 115 174-291 3-125 (131)
71 PRK14963 DNA polymerase III su 98.4 1.3E-05 2.7E-10 90.8 17.7 191 154-351 14-214 (504)
72 PRK12323 DNA polymerase III su 98.4 8E-06 1.7E-10 92.2 15.8 178 154-354 16-225 (700)
73 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4.2E-13 99.6 -4.6 62 747-815 311-374 (419)
74 PRK06645 DNA polymerase III su 98.3 1.9E-05 4.2E-10 88.9 18.5 177 154-351 21-226 (507)
75 PLN03150 hypothetical protein; 98.3 1.2E-06 2.6E-11 102.9 9.2 109 533-642 419-529 (623)
76 COG4886 Leucine-rich repeat (L 98.3 2.9E-07 6.2E-12 103.2 3.7 107 529-639 113-220 (394)
77 PF05496 RuvB_N: Holliday junc 98.3 1.1E-05 2.4E-10 78.9 14.0 175 154-358 24-225 (233)
78 PRK13341 recombination factor 98.3 7.6E-06 1.6E-10 96.2 15.4 170 154-350 28-213 (725)
79 PRK05642 DNA replication initi 98.3 1.2E-05 2.6E-10 82.2 14.8 150 175-353 45-207 (234)
80 PRK14962 DNA polymerase III su 98.3 2.6E-05 5.6E-10 87.6 17.8 185 154-357 14-222 (472)
81 PRK14956 DNA polymerase III su 98.3 1.3E-05 2.9E-10 88.3 14.9 190 154-351 18-219 (484)
82 PF13855 LRR_8: Leucine rich r 98.3 9.2E-07 2E-11 69.3 4.0 56 557-613 2-59 (61)
83 PRK09376 rho transcription ter 98.3 1.5E-06 3.2E-11 92.3 6.7 98 165-264 158-267 (416)
84 PF00308 Bac_DnaA: Bacterial d 98.3 7.4E-06 1.6E-10 82.7 11.5 181 153-351 8-205 (219)
85 PRK08903 DnaA regulatory inact 98.2 1.1E-05 2.3E-10 82.7 12.7 171 155-358 20-203 (227)
86 TIGR01242 26Sp45 26S proteasom 98.2 1.3E-05 2.7E-10 88.3 14.0 171 154-348 122-328 (364)
87 PRK14957 DNA polymerase III su 98.2 3.5E-05 7.5E-10 87.4 17.6 182 154-355 16-222 (546)
88 PRK08691 DNA polymerase III su 98.2 1.6E-05 3.5E-10 90.9 14.7 180 154-353 16-219 (709)
89 PRK14964 DNA polymerase III su 98.2 3.9E-05 8.6E-10 85.6 17.3 179 154-351 13-214 (491)
90 TIGR00678 holB DNA polymerase 98.2 4.3E-05 9.3E-10 75.6 16.0 160 165-350 3-187 (188)
91 TIGR02397 dnaX_nterm DNA polym 98.2 5.7E-05 1.2E-09 83.3 18.6 181 154-354 14-218 (355)
92 COG4886 Leucine-rich repeat (L 98.2 7.2E-07 1.6E-11 100.0 3.4 126 510-639 116-243 (394)
93 PF13191 AAA_16: AAA ATPase do 98.2 2.4E-06 5.1E-11 84.6 6.6 44 156-199 2-48 (185)
94 PRK07940 DNA polymerase III su 98.2 5.3E-05 1.2E-09 83.0 17.5 172 154-354 5-213 (394)
95 PRK14087 dnaA chromosomal repl 98.2 2.7E-05 5.8E-10 87.3 15.4 189 153-355 115-320 (450)
96 PRK05896 DNA polymerase III su 98.2 4.4E-05 9.5E-10 86.6 17.0 180 154-355 16-222 (605)
97 PRK07471 DNA polymerase III su 98.2 7.2E-05 1.6E-09 81.3 18.2 187 154-355 19-239 (365)
98 PRK07994 DNA polymerase III su 98.2 3.6E-05 7.8E-10 88.6 16.5 189 154-354 16-220 (647)
99 KOG1259 Nischarin, modulator o 98.2 2.5E-07 5.4E-12 91.8 -1.1 106 529-640 281-386 (490)
100 PRK14951 DNA polymerase III su 98.2 5.2E-05 1.1E-09 87.2 17.1 192 154-353 16-224 (618)
101 PRK14955 DNA polymerase III su 98.1 4.9E-05 1.1E-09 84.3 15.1 192 154-351 16-225 (397)
102 PRK14958 DNA polymerase III su 98.1 5.9E-05 1.3E-09 85.7 15.8 180 154-352 16-218 (509)
103 PRK09112 DNA polymerase III su 98.1 0.00013 2.9E-09 78.7 17.2 192 154-355 23-241 (351)
104 PRK14970 DNA polymerase III su 98.0 0.00015 3.1E-09 80.2 17.5 179 154-351 17-206 (367)
105 PRK06620 hypothetical protein; 98.0 4.9E-05 1.1E-09 76.3 12.4 158 153-351 16-186 (214)
106 PRK09111 DNA polymerase III su 98.0 0.00013 2.7E-09 84.3 17.1 191 154-353 24-232 (598)
107 PRK03992 proteasome-activating 98.0 5.8E-05 1.3E-09 83.4 14.0 171 154-348 131-337 (389)
108 PF05621 TniB: Bacterial TniB 98.0 0.00042 9.1E-09 71.4 18.8 187 163-352 46-259 (302)
109 KOG0989 Replication factor C, 98.0 3.7E-05 8E-10 77.6 10.7 184 154-351 36-227 (346)
110 KOG2227 Pre-initiation complex 98.0 0.0004 8.7E-09 74.3 18.9 191 153-346 149-360 (529)
111 PRK14959 DNA polymerase III su 98.0 0.00012 2.5E-09 83.7 16.0 184 154-358 16-225 (624)
112 PRK14969 DNA polymerase III su 98.0 0.00011 2.4E-09 84.1 15.8 179 154-351 16-217 (527)
113 CHL00181 cbbX CbbX; Provisiona 98.0 0.00015 3.3E-09 76.3 15.6 154 155-324 24-211 (287)
114 COG3903 Predicted ATPase [Gene 98.0 1.5E-05 3.3E-10 84.1 7.6 291 174-484 13-316 (414)
115 TIGR00767 rho transcription te 98.0 1.7E-05 3.6E-10 84.9 8.0 90 173-264 166-266 (415)
116 TIGR02881 spore_V_K stage V sp 98.0 8.2E-05 1.8E-09 77.8 13.2 154 155-324 7-193 (261)
117 PF14516 AAA_35: AAA-like doma 98.0 0.00071 1.5E-08 73.1 20.7 195 153-361 10-246 (331)
118 PRK14954 DNA polymerase III su 98.0 0.00022 4.8E-09 82.4 17.7 192 154-350 16-224 (620)
119 PRK14952 DNA polymerase III su 98.0 0.00023 5E-09 81.6 17.6 184 154-358 13-224 (584)
120 PRK08451 DNA polymerase III su 98.0 0.00024 5.2E-09 80.2 17.4 178 154-354 14-218 (535)
121 PRK14971 DNA polymerase III su 98.0 0.00023 5E-09 82.8 17.7 178 154-351 17-219 (614)
122 TIGR00362 DnaA chromosomal rep 98.0 0.00018 3.8E-09 80.6 16.3 159 175-351 136-307 (405)
123 TIGR02880 cbbX_cfxQ probable R 97.9 0.00017 3.6E-09 76.0 14.8 154 155-324 23-210 (284)
124 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 57.9 3.7 34 581-614 2-35 (44)
125 PRK07764 DNA polymerase III su 97.9 0.00026 5.7E-09 84.5 17.7 177 154-351 15-218 (824)
126 TIGR03345 VI_ClpV1 type VI sec 97.9 9.3E-05 2E-09 89.4 14.0 180 154-347 187-389 (852)
127 PLN03150 hypothetical protein; 97.9 1.5E-05 3.2E-10 93.9 6.9 88 557-645 419-507 (623)
128 PRK06305 DNA polymerase III su 97.9 0.00049 1.1E-08 77.3 18.6 178 154-351 17-219 (451)
129 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 57.4 3.9 41 556-597 1-41 (44)
130 PRK00149 dnaA chromosomal repl 97.9 0.00021 4.6E-09 80.9 15.8 181 153-351 122-319 (450)
131 PRK11331 5-methylcytosine-spec 97.9 5.9E-05 1.3E-09 82.2 10.5 107 154-264 175-283 (459)
132 PRK14088 dnaA chromosomal repl 97.9 0.00011 2.4E-09 82.4 12.7 181 153-351 105-302 (440)
133 PRK12422 chromosomal replicati 97.9 0.00031 6.6E-09 78.6 16.2 153 175-347 141-306 (445)
134 PRK15386 type III secretion pr 97.9 5.3E-05 1.1E-09 81.6 9.6 72 552-636 48-120 (426)
135 PRK07133 DNA polymerase III su 97.9 0.00044 9.6E-09 80.3 17.7 177 154-351 18-216 (725)
136 PRK14086 dnaA chromosomal repl 97.9 0.00038 8.2E-09 79.2 16.6 159 175-351 314-485 (617)
137 KOG1909 Ran GTPase-activating 97.9 4.7E-06 1E-10 85.2 1.4 163 529-701 27-223 (382)
138 PRK14950 DNA polymerase III su 97.8 0.00056 1.2E-08 79.8 18.3 188 154-353 16-220 (585)
139 PRK14953 DNA polymerase III su 97.8 0.00066 1.4E-08 76.8 18.2 180 154-353 16-219 (486)
140 KOG2982 Uncharacterized conser 97.8 5.7E-06 1.2E-10 82.5 1.1 35 746-780 246-287 (418)
141 PRK14948 DNA polymerase III su 97.8 0.0007 1.5E-08 78.8 18.3 191 154-354 16-222 (620)
142 KOG0531 Protein phosphatase 1, 97.8 2.5E-06 5.4E-11 95.7 -1.8 127 509-641 71-199 (414)
143 PRK06647 DNA polymerase III su 97.8 0.00078 1.7E-08 77.5 18.2 175 154-352 16-218 (563)
144 PTZ00361 26 proteosome regulat 97.8 0.00017 3.8E-09 79.7 12.3 171 155-348 184-389 (438)
145 KOG1859 Leucine-rich repeat pr 97.8 9.1E-07 2E-11 98.0 -5.5 128 507-641 161-292 (1096)
146 PRK15386 type III secretion pr 97.8 4.4E-05 9.6E-10 82.2 7.1 61 531-597 51-112 (426)
147 PHA02544 44 clamp loader, smal 97.8 0.00018 3.8E-09 77.9 11.6 145 154-320 21-171 (316)
148 PTZ00454 26S protease regulato 97.8 0.00068 1.5E-08 74.6 16.0 173 154-349 145-352 (398)
149 TIGR02639 ClpA ATP-dependent C 97.7 0.00021 4.6E-09 85.8 13.0 154 155-322 183-358 (731)
150 KOG2120 SCF ubiquitin ligase, 97.7 3.4E-06 7.4E-11 84.1 -2.8 61 691-759 313-373 (419)
151 COG2255 RuvB Holliday junction 97.7 0.0067 1.5E-07 61.1 19.8 172 154-355 26-224 (332)
152 CHL00095 clpC Clp protease ATP 97.7 0.00032 6.9E-09 85.3 12.9 154 155-321 180-353 (821)
153 TIGR03689 pup_AAA proteasome A 97.7 0.0006 1.3E-08 76.7 14.0 162 154-324 182-380 (512)
154 COG1373 Predicted ATPase (AAA+ 97.7 0.00051 1.1E-08 75.9 13.3 135 159-318 22-163 (398)
155 PRK10865 protein disaggregatio 97.6 0.0004 8.7E-09 84.3 13.4 154 155-322 179-354 (857)
156 PRK05563 DNA polymerase III su 97.6 0.0018 3.9E-08 74.8 18.1 186 154-351 16-217 (559)
157 COG0593 DnaA ATPase involved i 97.6 0.0005 1.1E-08 74.4 12.2 156 153-326 87-261 (408)
158 KOG2543 Origin recognition com 97.6 0.00036 7.8E-09 72.7 10.5 159 153-321 5-192 (438)
159 COG0466 Lon ATP-dependent Lon 97.6 0.0016 3.4E-08 73.7 16.3 154 155-322 324-508 (782)
160 PRK07399 DNA polymerase III su 97.6 0.0041 9E-08 66.3 19.0 190 155-354 5-221 (314)
161 PRK14965 DNA polymerase III su 97.6 0.001 2.2E-08 77.2 15.6 181 154-355 16-222 (576)
162 TIGR00763 lon ATP-dependent pr 97.6 0.0021 4.5E-08 77.8 18.6 46 154-199 320-371 (775)
163 KOG0531 Protein phosphatase 1, 97.6 1.1E-05 2.3E-10 90.7 -0.9 106 530-641 70-175 (414)
164 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00074 1.6E-08 82.4 14.9 153 155-322 174-349 (852)
165 PRK11034 clpA ATP-dependent Cl 97.6 0.00045 9.8E-09 81.9 12.1 155 155-322 187-362 (758)
166 KOG4579 Leucine-rich repeat (L 97.6 9.1E-06 2E-10 71.8 -1.6 92 529-622 50-141 (177)
167 PRK10787 DNA-binding ATP-depen 97.5 0.0032 6.9E-08 75.5 18.6 158 153-322 321-506 (784)
168 KOG1514 Origin recognition com 97.5 0.0031 6.8E-08 71.0 17.1 201 154-357 396-624 (767)
169 PF05673 DUF815: Protein of un 97.5 0.003 6.5E-08 63.1 15.3 46 154-199 27-76 (249)
170 PRK08116 hypothetical protein; 97.5 0.00015 3.2E-09 75.6 6.3 103 176-292 115-221 (268)
171 PRK05707 DNA polymerase III su 97.5 0.0029 6.2E-08 67.9 16.0 94 253-354 106-203 (328)
172 KOG1859 Leucine-rich repeat pr 97.5 4.1E-06 8.8E-11 93.0 -5.9 101 533-640 165-266 (1096)
173 TIGR01241 FtsH_fam ATP-depende 97.5 0.0027 5.8E-08 73.0 16.4 172 154-348 55-260 (495)
174 PF10443 RNA12: RNA12 protein; 97.4 0.013 2.7E-07 63.4 19.4 194 159-364 1-288 (431)
175 KOG3665 ZYG-1-like serine/thre 97.4 4.4E-05 9.6E-10 89.5 1.0 136 532-677 122-262 (699)
176 KOG3665 ZYG-1-like serine/thre 97.4 9.3E-05 2E-09 86.8 3.5 129 510-640 122-262 (699)
177 COG3267 ExeA Type II secretory 97.4 0.023 4.9E-07 56.7 19.3 179 173-356 49-247 (269)
178 PF00004 AAA: ATPase family as 97.3 0.00076 1.6E-08 62.3 8.2 22 178-199 1-22 (132)
179 KOG1644 U2-associated snRNP A' 97.3 0.00024 5.3E-09 67.4 4.4 99 535-637 45-149 (233)
180 PRK08058 DNA polymerase III su 97.3 0.0062 1.3E-07 65.8 15.9 146 155-320 6-180 (329)
181 PRK08118 topology modulation p 97.3 0.00013 2.9E-09 70.2 2.7 37 176-212 2-38 (167)
182 PF04665 Pox_A32: Poxvirus A32 97.3 0.00065 1.4E-08 68.3 7.4 36 176-214 14-49 (241)
183 smart00382 AAA ATPases associa 97.3 0.001 2.2E-08 62.1 8.4 87 175-265 2-90 (148)
184 CHL00176 ftsH cell division pr 97.3 0.0098 2.1E-07 69.5 17.8 171 154-347 183-387 (638)
185 KOG2004 Mitochondrial ATP-depe 97.3 0.0079 1.7E-07 67.9 15.9 153 155-322 412-596 (906)
186 PHA00729 NTP-binding motif con 97.2 0.0016 3.4E-08 64.8 9.3 35 165-199 7-41 (226)
187 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0058 1.3E-07 67.6 14.3 90 155-263 191-292 (802)
188 PRK12377 putative replication 97.2 0.00079 1.7E-08 68.8 7.3 74 174-263 100-173 (248)
189 PRK08769 DNA polymerase III su 97.2 0.018 4E-07 61.2 17.3 172 161-355 11-209 (319)
190 PRK10536 hypothetical protein; 97.2 0.0036 7.7E-08 63.4 11.2 55 155-212 56-110 (262)
191 TIGR00602 rad24 checkpoint pro 97.2 0.0029 6.4E-08 73.2 12.1 194 154-353 84-322 (637)
192 KOG2982 Uncharacterized conser 97.1 0.00045 9.7E-09 69.4 4.5 85 529-614 68-157 (418)
193 COG1222 RPT1 ATP-dependent 26S 97.1 0.015 3.2E-07 60.6 15.3 181 155-359 152-372 (406)
194 KOG1947 Leucine rich repeat pr 97.1 8.5E-05 1.8E-09 85.8 -1.0 38 806-843 403-442 (482)
195 KOG0991 Replication factor C, 97.1 0.0018 3.9E-08 62.8 8.0 92 154-265 27-125 (333)
196 KOG4579 Leucine-rich repeat (L 97.1 6.1E-05 1.3E-09 66.7 -1.8 105 533-640 28-135 (177)
197 PRK08181 transposase; Validate 97.1 0.00065 1.4E-08 70.3 4.9 77 168-263 101-177 (269)
198 PRK07261 topology modulation p 97.0 0.0018 4E-08 62.6 7.7 67 177-264 2-68 (171)
199 KOG0741 AAA+-type ATPase [Post 97.0 0.0072 1.6E-07 65.7 12.6 156 174-358 537-716 (744)
200 KOG2228 Origin recognition com 97.0 0.0072 1.6E-07 62.2 11.8 167 154-323 24-220 (408)
201 KOG0730 AAA+-type ATPase [Post 97.0 0.028 6E-07 63.3 17.2 164 155-338 435-631 (693)
202 KOG1909 Ran GTPase-activating 97.0 0.00026 5.7E-09 72.8 1.5 194 552-761 88-310 (382)
203 TIGR01243 CDC48 AAA family ATP 97.0 0.0085 1.8E-07 72.4 14.4 173 155-350 179-383 (733)
204 PRK06921 hypothetical protein; 97.0 0.0018 3.8E-08 67.4 7.4 39 174-214 116-154 (266)
205 PF13177 DNA_pol3_delta2: DNA 97.0 0.0086 1.9E-07 57.3 11.6 137 158-310 1-162 (162)
206 PRK06871 DNA polymerase III su 97.0 0.044 9.5E-07 58.5 17.7 174 162-351 10-200 (325)
207 PF00448 SRP54: SRP54-type pro 96.9 0.0033 7.1E-08 62.1 8.6 85 175-262 1-92 (196)
208 PRK06835 DNA replication prote 96.9 0.028 6.1E-07 60.2 16.2 102 175-291 183-288 (329)
209 PRK12608 transcription termina 96.9 0.0053 1.1E-07 65.7 10.5 100 162-263 119-230 (380)
210 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0069 1.5E-07 74.1 13.0 60 154-216 565-633 (852)
211 PRK07952 DNA replication prote 96.9 0.0037 8.1E-08 63.8 8.8 87 163-264 85-173 (244)
212 CHL00195 ycf46 Ycf46; Provisio 96.9 0.011 2.4E-07 66.7 13.1 175 154-350 228-431 (489)
213 TIGR02639 ClpA ATP-dependent C 96.9 0.011 2.3E-07 71.3 13.9 102 153-264 453-564 (731)
214 PRK09183 transposase/IS protei 96.9 0.004 8.6E-08 64.7 8.7 73 175-263 102-174 (259)
215 PRK10865 protein disaggregatio 96.8 0.0099 2.2E-07 72.5 13.3 47 153-199 567-622 (857)
216 PRK06090 DNA polymerase III su 96.8 0.063 1.4E-06 57.1 17.6 163 162-354 11-201 (319)
217 COG0542 clpA ATP-binding subun 96.8 0.046 9.9E-07 64.0 17.5 104 154-264 491-604 (786)
218 COG2812 DnaX DNA polymerase II 96.8 0.0069 1.5E-07 67.8 10.5 184 154-349 16-215 (515)
219 PF01695 IstB_IS21: IstB-like 96.8 0.00054 1.2E-08 66.6 1.6 74 174-264 46-119 (178)
220 KOG0744 AAA+-type ATPase [Post 96.8 0.016 3.5E-07 59.3 11.8 82 175-264 177-261 (423)
221 cd01120 RecA-like_NTPases RecA 96.7 0.0051 1.1E-07 59.1 8.1 40 177-219 1-40 (165)
222 TIGR01243 CDC48 AAA family ATP 96.7 0.022 4.8E-07 68.8 15.2 171 155-348 454-657 (733)
223 KOG1644 U2-associated snRNP A' 96.7 0.0026 5.7E-08 60.6 5.6 100 512-612 44-149 (233)
224 PRK06526 transposase; Provisio 96.7 0.0028 6.1E-08 65.3 5.9 74 174-264 97-170 (254)
225 TIGR02640 gas_vesic_GvpN gas v 96.7 0.027 5.8E-07 58.8 13.3 55 162-224 10-64 (262)
226 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0022 4.9E-08 68.2 5.1 45 155-199 52-102 (361)
227 KOG2739 Leucine-rich acidic nu 96.6 0.00098 2.1E-08 66.3 2.2 61 578-640 63-128 (260)
228 cd01393 recA_like RecA is a b 96.6 0.017 3.8E-07 58.9 11.6 86 174-263 18-124 (226)
229 PRK07993 DNA polymerase III su 96.6 0.09 2E-06 56.7 17.2 164 162-352 10-202 (334)
230 TIGR02012 tigrfam_recA protein 96.6 0.0058 1.3E-07 64.7 7.9 82 174-263 54-143 (321)
231 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0046 9.9E-08 75.1 8.1 47 153-199 565-620 (852)
232 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.5E-08 59.1 3.3 23 177-199 1-23 (121)
233 PRK08939 primosomal protein Dn 96.6 0.0054 1.2E-07 65.1 7.7 117 158-291 135-260 (306)
234 cd00983 recA RecA is a bacter 96.6 0.0057 1.2E-07 64.8 7.8 82 174-263 54-143 (325)
235 TIGR02237 recomb_radB DNA repa 96.6 0.0082 1.8E-07 60.5 8.7 48 174-225 11-58 (209)
236 PRK09361 radB DNA repair and r 96.6 0.007 1.5E-07 61.8 8.2 46 174-223 22-67 (225)
237 PF02562 PhoH: PhoH-like prote 96.6 0.0047 1E-07 60.8 6.5 128 158-292 4-156 (205)
238 PRK04296 thymidine kinase; Pro 96.6 0.0032 7E-08 62.1 5.4 109 176-293 3-117 (190)
239 PRK06964 DNA polymerase III su 96.6 0.11 2.4E-06 55.8 17.4 92 252-355 131-226 (342)
240 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0097 2.1E-07 61.2 9.1 56 174-231 18-77 (235)
241 KOG0733 Nuclear AAA ATPase (VC 96.6 0.051 1.1E-06 60.5 14.6 154 174-348 544-718 (802)
242 PF08423 Rad51: Rad51; InterP 96.5 0.013 2.8E-07 60.7 9.8 59 174-233 37-98 (256)
243 KOG0731 AAA+-type ATPase conta 96.5 0.047 1E-06 63.5 14.9 174 155-351 312-521 (774)
244 PRK04132 replication factor C 96.5 0.051 1.1E-06 65.0 15.7 151 183-353 574-730 (846)
245 CHL00095 clpC Clp protease ATP 96.5 0.0079 1.7E-07 73.4 9.2 102 153-264 508-622 (821)
246 PRK09354 recA recombinase A; P 96.5 0.0079 1.7E-07 64.2 8.0 82 174-263 59-148 (349)
247 cd01133 F1-ATPase_beta F1 ATP 96.5 0.011 2.3E-07 61.0 8.6 89 173-264 67-174 (274)
248 COG1223 Predicted ATPase (AAA+ 96.4 0.099 2.2E-06 52.0 14.4 170 154-347 121-318 (368)
249 PRK06762 hypothetical protein; 96.4 0.041 8.9E-07 53.0 11.9 24 176-199 3-26 (166)
250 PF07693 KAP_NTPase: KAP famil 96.4 0.13 2.9E-06 55.7 17.1 40 160-199 2-44 (325)
251 COG1484 DnaC DNA replication p 96.3 0.012 2.6E-07 60.7 8.0 75 174-264 104-178 (254)
252 KOG2123 Uncharacterized conser 96.3 0.00031 6.8E-09 69.8 -3.6 100 531-634 18-123 (388)
253 PF14532 Sigma54_activ_2: Sigm 96.3 0.0064 1.4E-07 56.6 5.3 43 157-199 1-45 (138)
254 COG0542 clpA ATP-binding subun 96.3 0.027 5.8E-07 65.9 11.3 153 155-322 171-346 (786)
255 cd01394 radB RadB. The archaea 96.3 0.027 5.9E-07 57.1 10.3 43 174-219 18-60 (218)
256 PRK11034 clpA ATP-dependent Cl 96.3 0.013 2.9E-07 69.7 9.0 46 154-199 458-512 (758)
257 TIGR02238 recomb_DMC1 meiotic 96.2 0.026 5.7E-07 60.1 10.2 59 174-233 95-156 (313)
258 cd03238 ABC_UvrA The excision 96.2 0.018 3.8E-07 55.9 8.1 121 174-306 20-161 (176)
259 KOG0728 26S proteasome regulat 96.2 0.14 3.1E-06 50.4 14.1 165 156-340 148-349 (404)
260 KOG0736 Peroxisome assembly fa 96.2 0.17 3.8E-06 58.0 16.7 168 154-345 672-876 (953)
261 KOG1947 Leucine rich repeat pr 96.2 0.00069 1.5E-08 78.2 -2.1 88 552-639 184-280 (482)
262 PRK06696 uridine kinase; Valid 96.2 0.0064 1.4E-07 61.9 5.2 42 158-199 2-46 (223)
263 KOG1969 DNA replication checkp 96.2 0.01 2.2E-07 67.2 7.0 72 174-264 325-398 (877)
264 cd01131 PilT Pilus retraction 96.2 0.0082 1.8E-07 59.7 5.8 109 176-294 2-111 (198)
265 KOG2739 Leucine-rich acidic nu 96.1 0.0021 4.6E-08 64.0 1.3 106 531-639 42-154 (260)
266 COG0470 HolB ATPase involved i 96.1 0.044 9.5E-07 59.5 11.8 142 155-311 2-170 (325)
267 cd03214 ABC_Iron-Siderophores_ 96.1 0.018 4E-07 56.3 7.9 117 174-295 24-161 (180)
268 PLN00020 ribulose bisphosphate 96.1 0.0083 1.8E-07 63.5 5.6 26 174-199 147-172 (413)
269 COG2884 FtsE Predicted ATPase 96.1 0.047 1E-06 51.9 9.6 121 174-299 27-204 (223)
270 COG2607 Predicted ATPase (AAA+ 96.1 0.031 6.6E-07 55.0 8.7 96 154-275 60-164 (287)
271 PRK15455 PrkA family serine pr 96.0 0.0068 1.5E-07 68.0 4.8 45 155-199 77-127 (644)
272 PRK05541 adenylylsulfate kinas 96.0 0.013 2.9E-07 57.1 6.4 37 174-213 6-42 (176)
273 PF13604 AAA_30: AAA domain; P 96.0 0.034 7.3E-07 55.2 9.3 116 163-290 6-129 (196)
274 PRK04301 radA DNA repair and r 96.0 0.029 6.3E-07 60.4 9.5 57 174-232 101-161 (317)
275 PF00154 RecA: recA bacterial 96.0 0.086 1.9E-06 55.8 12.6 83 174-264 52-142 (322)
276 TIGR03499 FlhF flagellar biosy 96.0 0.029 6.2E-07 59.2 9.2 86 174-262 193-281 (282)
277 PLN03187 meiotic recombination 96.0 0.028 6.1E-07 60.3 9.1 60 174-234 125-187 (344)
278 PRK08233 hypothetical protein; 96.0 0.022 4.8E-07 55.9 7.6 25 175-199 3-27 (182)
279 cd03115 SRP The signal recogni 95.9 0.026 5.7E-07 54.8 8.0 85 177-264 2-93 (173)
280 PRK11889 flhF flagellar biosyn 95.9 0.037 8.1E-07 59.5 9.5 87 174-263 240-330 (436)
281 cd03247 ABCC_cytochrome_bd The 95.9 0.023 4.9E-07 55.6 7.6 26 174-199 27-52 (178)
282 PRK00771 signal recognition pa 95.9 0.045 9.8E-07 60.9 10.6 86 174-263 94-185 (437)
283 TIGR02239 recomb_RAD51 DNA rep 95.9 0.042 9E-07 58.8 10.0 59 174-233 95-156 (316)
284 KOG0735 AAA+-type ATPase [Post 95.9 0.026 5.6E-07 63.8 8.4 73 174-263 430-504 (952)
285 PRK10733 hflB ATP-dependent me 95.9 0.15 3.2E-06 60.5 15.4 170 155-347 153-356 (644)
286 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.5E-08 37.3 0.9 19 582-600 2-20 (22)
287 COG1102 Cmk Cytidylate kinase 95.9 0.024 5.2E-07 52.3 6.6 44 177-234 2-45 (179)
288 PRK08699 DNA polymerase III su 95.9 0.13 2.9E-06 55.2 13.5 25 175-199 21-45 (325)
289 COG1618 Predicted nucleotide k 95.8 0.01 2.2E-07 54.6 4.0 24 176-199 6-29 (179)
290 KOG0734 AAA+-type ATPase conta 95.8 0.16 3.6E-06 55.7 13.5 45 155-199 305-361 (752)
291 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.05 1.1E-06 53.4 9.2 23 177-199 1-23 (183)
292 PRK14974 cell division protein 95.7 0.063 1.4E-06 57.6 10.4 86 174-263 139-232 (336)
293 COG1875 NYN ribonuclease and A 95.7 0.039 8.5E-07 57.7 8.1 131 158-293 228-389 (436)
294 PRK10463 hydrogenase nickel in 95.7 0.21 4.4E-06 52.1 13.4 90 168-264 97-195 (290)
295 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.081 1.8E-06 49.8 9.5 113 176-293 3-139 (159)
296 PRK06547 hypothetical protein; 95.6 0.016 3.4E-07 55.9 5.0 34 166-199 6-39 (172)
297 PLN03186 DNA repair protein RA 95.6 0.088 1.9E-06 56.7 11.0 59 174-233 122-183 (342)
298 PF00006 ATP-synt_ab: ATP synt 95.6 0.043 9.3E-07 54.8 8.0 93 166-263 5-115 (215)
299 TIGR00959 ffh signal recogniti 95.6 0.051 1.1E-06 60.2 9.4 87 174-263 98-192 (428)
300 PRK10867 signal recognition pa 95.6 0.046 1E-06 60.6 9.0 26 174-199 99-124 (433)
301 PRK14722 flhF flagellar biosyn 95.6 0.049 1.1E-06 59.1 8.9 87 174-263 136-225 (374)
302 COG4608 AppF ABC-type oligopep 95.6 0.053 1.2E-06 55.0 8.5 121 174-300 38-178 (268)
303 PRK12723 flagellar biosynthesi 95.6 0.061 1.3E-06 58.8 9.7 88 174-263 173-264 (388)
304 TIGR02236 recomb_radA DNA repa 95.6 0.059 1.3E-06 57.9 9.6 58 174-233 94-155 (310)
305 TIGR00064 ftsY signal recognit 95.5 0.059 1.3E-06 56.3 9.2 86 174-263 71-164 (272)
306 KOG1051 Chaperone HSP104 and r 95.5 0.062 1.3E-06 63.9 10.1 101 154-264 562-671 (898)
307 cd03216 ABC_Carb_Monos_I This 95.5 0.021 4.5E-07 54.9 5.3 115 174-295 25-145 (163)
308 cd01121 Sms Sms (bacterial rad 95.5 0.091 2E-06 57.4 10.8 81 174-263 81-168 (372)
309 PRK09270 nucleoside triphospha 95.5 0.057 1.2E-06 55.2 8.7 27 173-199 31-57 (229)
310 PTZ00035 Rad51 protein; Provis 95.5 0.14 3.1E-06 55.3 12.0 58 174-233 117-178 (337)
311 cd03246 ABCC_Protease_Secretio 95.5 0.047 1E-06 53.0 7.7 26 174-199 27-52 (173)
312 COG0468 RecA RecA/RadA recombi 95.5 0.06 1.3E-06 55.8 8.8 86 174-263 59-151 (279)
313 cd03222 ABC_RNaseL_inhibitor T 95.5 0.056 1.2E-06 52.4 8.1 104 173-296 23-136 (177)
314 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.11 2.5E-06 53.3 10.9 48 174-226 20-67 (237)
315 TIGR02858 spore_III_AA stage I 95.5 0.1 2.3E-06 54.2 10.5 124 163-295 98-232 (270)
316 KOG2035 Replication factor C, 95.5 0.11 2.3E-06 52.4 9.9 209 155-377 14-261 (351)
317 PRK07667 uridine kinase; Provi 95.4 0.03 6.5E-07 55.4 6.2 37 163-199 3-41 (193)
318 COG0396 sufC Cysteine desulfur 95.4 0.067 1.4E-06 52.6 8.2 64 243-306 152-218 (251)
319 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.6E-07 53.9 3.1 21 178-198 1-21 (129)
320 KOG0743 AAA+-type ATPase [Post 95.4 0.68 1.5E-05 50.4 16.4 151 176-361 236-417 (457)
321 PF00485 PRK: Phosphoribulokin 95.4 0.012 2.7E-07 58.4 3.3 78 177-257 1-87 (194)
322 PRK06002 fliI flagellum-specif 95.4 0.043 9.3E-07 60.6 7.7 87 174-264 164-265 (450)
323 TIGR01069 mutS2 MutS2 family p 95.3 0.01 2.2E-07 71.1 3.0 183 174-377 321-523 (771)
324 COG0464 SpoVK ATPases of the A 95.3 0.18 3.9E-06 58.2 13.3 152 155-325 243-426 (494)
325 PRK12727 flagellar biosynthesi 95.3 0.1 2.2E-06 58.6 10.5 87 174-263 349-438 (559)
326 PRK12726 flagellar biosynthesi 95.3 0.092 2E-06 56.4 9.7 87 174-263 205-295 (407)
327 cd02025 PanK Pantothenate kina 95.3 0.072 1.6E-06 53.8 8.6 23 177-199 1-23 (220)
328 cd03228 ABCC_MRP_Like The MRP 95.3 0.08 1.7E-06 51.3 8.5 26 174-199 27-52 (171)
329 PRK14721 flhF flagellar biosyn 95.2 0.19 4.2E-06 55.4 12.2 60 174-234 190-250 (420)
330 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.084 1.8E-06 54.9 9.1 40 174-216 35-74 (259)
331 cd03223 ABCD_peroxisomal_ALDP 95.2 0.073 1.6E-06 51.3 8.1 125 174-306 26-160 (166)
332 COG0572 Udk Uridine kinase [Nu 95.2 0.038 8.2E-07 54.5 6.0 26 174-199 7-32 (218)
333 PRK09519 recA DNA recombinatio 95.2 0.056 1.2E-06 63.8 8.5 82 174-263 59-148 (790)
334 cd03230 ABC_DR_subfamily_A Thi 95.2 0.056 1.2E-06 52.5 7.3 111 174-296 25-159 (173)
335 PRK13531 regulatory ATPase Rav 95.2 0.026 5.7E-07 62.6 5.4 44 154-199 20-63 (498)
336 TIGR00554 panK_bact pantothena 95.2 0.067 1.5E-06 56.0 8.2 80 173-253 60-141 (290)
337 PRK13539 cytochrome c biogenes 95.2 0.11 2.5E-06 52.1 9.6 26 174-199 27-52 (207)
338 cd03269 ABC_putative_ATPase Th 95.2 0.12 2.6E-06 52.0 9.9 26 174-199 25-50 (210)
339 cd02019 NK Nucleoside/nucleoti 95.2 0.016 3.5E-07 46.4 2.7 23 177-199 1-23 (69)
340 TIGR01425 SRP54_euk signal rec 95.2 0.076 1.6E-06 58.6 8.8 26 174-199 99-124 (429)
341 COG1066 Sms Predicted ATP-depe 95.2 0.15 3.3E-06 54.5 10.6 90 164-263 80-178 (456)
342 cd01135 V_A-ATPase_B V/A-type 95.2 0.1 2.2E-06 53.7 9.1 91 173-264 67-177 (276)
343 KOG2123 Uncharacterized conser 95.1 0.0015 3.3E-08 65.0 -3.9 109 555-672 18-127 (388)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.086 1.9E-06 49.4 8.0 100 174-296 25-131 (144)
345 KOG1532 GTPase XAB1, interacts 95.1 0.1 2.2E-06 52.3 8.5 26 174-199 18-43 (366)
346 TIGR00390 hslU ATP-dependent p 95.1 0.056 1.2E-06 58.7 7.3 46 154-199 12-71 (441)
347 PTZ00301 uridine kinase; Provi 95.0 0.027 5.8E-07 56.2 4.5 25 175-199 3-27 (210)
348 PRK08972 fliI flagellum-specif 95.0 0.052 1.1E-06 59.7 7.1 86 174-264 161-263 (444)
349 COG0541 Ffh Signal recognition 95.0 1.7 3.6E-05 47.4 17.8 58 174-235 99-158 (451)
350 KOG0735 AAA+-type ATPase [Post 95.0 0.9 1.9E-05 52.0 16.4 172 156-350 669-872 (952)
351 PF13671 AAA_33: AAA domain; P 95.0 0.02 4.4E-07 53.5 3.3 23 177-199 1-23 (143)
352 PRK05480 uridine/cytidine kina 95.0 0.021 4.5E-07 57.5 3.6 26 174-199 5-30 (209)
353 PRK08927 fliI flagellum-specif 95.0 0.081 1.8E-06 58.4 8.3 87 173-264 156-259 (442)
354 KOG0652 26S proteasome regulat 94.9 0.85 1.8E-05 45.5 14.2 173 147-339 162-372 (424)
355 COG1419 FlhF Flagellar GTP-bin 94.9 0.23 4.9E-06 53.6 11.3 86 174-262 202-290 (407)
356 TIGR00382 clpX endopeptidase C 94.9 0.07 1.5E-06 58.7 7.7 47 153-199 76-140 (413)
357 PRK05922 type III secretion sy 94.9 0.098 2.1E-06 57.7 8.8 87 173-264 155-258 (434)
358 PRK12724 flagellar biosynthesi 94.9 0.086 1.9E-06 57.6 8.2 83 175-262 223-308 (432)
359 TIGR01817 nifA Nif-specific re 94.9 0.23 4.9E-06 57.9 12.4 47 153-199 195-243 (534)
360 PRK05342 clpX ATP-dependent pr 94.9 0.077 1.7E-06 58.8 8.0 47 153-199 70-132 (412)
361 PRK13538 cytochrome c biogenes 94.9 0.11 2.4E-06 52.0 8.6 26 174-199 26-51 (204)
362 COG0563 Adk Adenylate kinase a 94.9 0.042 9.1E-07 53.3 5.3 23 177-199 2-24 (178)
363 PRK06067 flagellar accessory p 94.9 0.12 2.6E-06 53.0 9.0 84 174-263 24-130 (234)
364 cd01136 ATPase_flagellum-secre 94.9 0.094 2E-06 55.8 8.3 87 173-264 67-170 (326)
365 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.23 5.1E-06 50.7 11.1 40 174-216 19-58 (229)
366 COG1136 SalX ABC-type antimicr 94.9 0.15 3.3E-06 50.9 9.1 125 174-306 30-215 (226)
367 PF07728 AAA_5: AAA domain (dy 94.8 0.062 1.3E-06 50.0 6.2 75 178-264 2-76 (139)
368 PRK12597 F0F1 ATP synthase sub 94.8 0.083 1.8E-06 58.8 8.0 89 173-263 141-247 (461)
369 COG1126 GlnQ ABC-type polar am 94.8 0.2 4.4E-06 48.9 9.5 26 174-199 27-52 (240)
370 PF07726 AAA_3: ATPase family 94.8 0.02 4.3E-07 51.2 2.6 28 178-208 2-29 (131)
371 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.045 9.7E-07 52.2 5.3 116 174-297 24-145 (157)
372 TIGR01650 PD_CobS cobaltochela 94.8 1.1 2.5E-05 47.5 16.0 55 161-223 52-106 (327)
373 PRK04328 hypothetical protein; 94.8 0.11 2.5E-06 53.6 8.6 41 174-217 22-62 (249)
374 TIGR00235 udk uridine kinase. 94.8 0.025 5.3E-07 56.9 3.5 26 174-199 5-30 (207)
375 cd01129 PulE-GspE PulE/GspE Th 94.8 0.054 1.2E-06 56.4 6.2 105 157-270 62-166 (264)
376 PRK08149 ATP synthase SpaL; Va 94.8 0.12 2.6E-06 57.0 9.0 87 173-264 149-252 (428)
377 PRK08533 flagellar accessory p 94.8 0.11 2.4E-06 52.9 8.3 49 174-227 23-71 (230)
378 cd01132 F1_ATPase_alpha F1 ATP 94.8 0.085 1.8E-06 54.3 7.3 94 173-271 67-180 (274)
379 cd03283 ABC_MutS-like MutS-lik 94.7 0.11 2.4E-06 51.6 8.0 24 176-199 26-49 (199)
380 TIGR01360 aden_kin_iso1 adenyl 94.7 0.025 5.4E-07 55.8 3.4 26 174-199 2-27 (188)
381 PF13481 AAA_25: AAA domain; P 94.7 0.11 2.4E-06 51.4 8.1 43 175-217 32-81 (193)
382 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.12 2.5E-06 52.5 8.0 119 174-295 29-202 (254)
383 COG0488 Uup ATPase components 94.7 0.23 5.1E-06 56.7 11.4 130 174-307 347-510 (530)
384 PF00560 LRR_1: Leucine Rich R 94.7 0.016 3.4E-07 34.4 1.1 22 557-579 1-22 (22)
385 PRK09280 F0F1 ATP synthase sub 94.7 0.11 2.4E-06 57.7 8.4 90 173-264 142-249 (463)
386 PF06745 KaiC: KaiC; InterPro 94.7 0.064 1.4E-06 54.7 6.4 84 174-263 18-125 (226)
387 PRK00279 adk adenylate kinase; 94.7 0.15 3.2E-06 51.6 8.9 23 177-199 2-24 (215)
388 TIGR00150 HI0065_YjeE ATPase, 94.7 0.053 1.1E-06 49.4 5.0 38 162-199 7-46 (133)
389 COG2401 ABC-type ATPase fused 94.7 0.044 9.4E-07 58.2 5.0 145 156-304 373-580 (593)
390 PRK05703 flhF flagellar biosyn 94.7 0.1 2.3E-06 58.1 8.4 85 175-262 221-308 (424)
391 PF03029 ATP_bind_1: Conserved 94.7 0.065 1.4E-06 54.8 6.2 32 180-214 1-32 (238)
392 TIGR03740 galliderm_ABC gallid 94.6 0.19 4.1E-06 51.1 9.7 26 174-199 25-50 (223)
393 PRK05439 pantothenate kinase; 94.6 0.16 3.5E-06 53.6 9.3 81 173-254 84-166 (311)
394 PRK03839 putative kinase; Prov 94.6 0.026 5.7E-07 55.2 3.3 23 177-199 2-24 (180)
395 PF00910 RNA_helicase: RNA hel 94.6 0.023 5E-07 50.1 2.5 22 178-199 1-22 (107)
396 KOG0727 26S proteasome regulat 94.6 1.7 3.7E-05 43.2 15.3 45 155-199 156-213 (408)
397 cd03266 ABC_NatA_sodium_export 94.6 0.19 4.1E-06 50.9 9.5 26 174-199 30-55 (218)
398 PRK13543 cytochrome c biogenes 94.5 0.16 3.6E-06 51.2 8.9 26 174-199 36-61 (214)
399 PRK11823 DNA repair protein Ra 94.5 0.18 3.9E-06 56.8 9.9 41 174-217 79-119 (446)
400 KOG0739 AAA+-type ATPase [Post 94.5 0.96 2.1E-05 46.2 13.6 171 154-348 133-335 (439)
401 TIGR03498 FliI_clade3 flagella 94.5 0.093 2E-06 57.9 7.4 88 173-264 138-241 (418)
402 KOG3864 Uncharacterized conser 94.5 0.0055 1.2E-07 58.6 -1.8 66 747-819 123-191 (221)
403 PF13306 LRR_5: Leucine rich r 94.5 0.095 2E-06 47.9 6.4 102 529-637 9-112 (129)
404 PF06309 Torsin: Torsin; Inte 94.5 0.17 3.7E-06 45.2 7.5 45 155-199 26-77 (127)
405 TIGR00708 cobA cob(I)alamin ad 94.5 0.11 2.4E-06 49.5 6.9 112 175-292 5-140 (173)
406 PF12775 AAA_7: P-loop contain 94.5 0.057 1.2E-06 56.4 5.5 88 164-263 23-110 (272)
407 TIGR00416 sms DNA repair prote 94.4 0.25 5.5E-06 55.7 10.9 50 164-216 81-132 (454)
408 TIGR03575 selen_PSTK_euk L-ser 94.4 0.26 5.6E-06 52.9 10.4 22 178-199 2-23 (340)
409 PF01583 APS_kinase: Adenylyls 94.4 0.044 9.5E-07 51.4 4.0 36 175-213 2-37 (156)
410 PTZ00185 ATPase alpha subunit; 94.4 0.19 4E-06 56.0 9.3 91 173-264 187-300 (574)
411 PTZ00088 adenylate kinase 1; P 94.4 0.034 7.5E-07 56.3 3.5 23 177-199 8-30 (229)
412 PRK12678 transcription termina 94.4 0.051 1.1E-06 60.9 5.0 97 165-263 405-513 (672)
413 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.4 0.17 3.7E-06 51.5 8.6 26 174-199 47-72 (224)
414 PF00158 Sigma54_activat: Sigm 94.4 0.063 1.4E-06 51.6 5.0 44 156-199 1-46 (168)
415 PRK13765 ATP-dependent proteas 94.3 0.073 1.6E-06 62.1 6.5 75 154-233 31-105 (637)
416 TIGR02974 phageshock_pspF psp 94.3 0.19 4.2E-06 54.2 9.4 44 156-199 1-46 (329)
417 cd03229 ABC_Class3 This class 94.3 0.054 1.2E-06 52.9 4.7 26 174-199 25-50 (178)
418 COG0465 HflB ATP-dependent Zn 94.3 0.46 1E-05 54.3 12.5 174 154-350 150-357 (596)
419 PRK06936 type III secretion sy 94.3 0.13 2.8E-06 56.8 7.9 87 173-264 160-263 (439)
420 PF03205 MobB: Molybdopterin g 94.3 0.06 1.3E-06 50.0 4.6 39 176-216 1-39 (140)
421 TIGR03771 anch_rpt_ABC anchore 94.3 0.21 4.6E-06 50.7 9.1 25 175-199 6-30 (223)
422 PRK04040 adenylate kinase; Pro 94.3 0.038 8.2E-07 54.3 3.4 24 176-199 3-26 (188)
423 PRK14723 flhF flagellar biosyn 94.3 0.18 3.9E-06 59.5 9.3 85 175-263 185-273 (767)
424 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.13 2.8E-06 51.4 7.2 25 174-198 25-49 (200)
425 PRK05201 hslU ATP-dependent pr 94.2 0.12 2.7E-06 56.2 7.4 46 154-199 15-74 (443)
426 PF08433 KTI12: Chromatin asso 94.2 0.075 1.6E-06 55.3 5.7 24 176-199 2-25 (270)
427 PRK09544 znuC high-affinity zi 94.2 0.17 3.8E-06 52.4 8.4 26 174-199 29-54 (251)
428 PRK00625 shikimate kinase; Pro 94.2 0.035 7.7E-07 53.6 3.0 23 177-199 2-24 (173)
429 COG3640 CooC CO dehydrogenase 94.2 0.084 1.8E-06 52.0 5.5 43 177-221 2-44 (255)
430 PRK06217 hypothetical protein; 94.2 0.073 1.6E-06 52.2 5.3 34 177-212 3-38 (183)
431 PRK10416 signal recognition pa 94.2 0.24 5.2E-06 53.0 9.5 86 174-263 113-206 (318)
432 cd03231 ABC_CcmA_heme_exporter 94.2 0.18 3.8E-06 50.4 8.1 26 174-199 25-50 (201)
433 KOG2170 ATPase of the AAA+ sup 94.2 0.13 2.8E-06 52.6 6.8 95 155-264 83-189 (344)
434 PRK05973 replicative DNA helic 94.1 0.29 6.2E-06 49.7 9.5 49 174-227 63-111 (237)
435 COG1428 Deoxynucleoside kinase 94.1 0.041 8.8E-07 53.5 3.2 25 175-199 4-28 (216)
436 cd02023 UMPK Uridine monophosp 94.1 0.032 7E-07 55.6 2.7 23 177-199 1-23 (198)
437 COG1120 FepC ABC-type cobalami 94.1 0.18 4E-06 51.4 8.0 26 174-199 27-52 (258)
438 PRK07132 DNA polymerase III su 94.1 2.6 5.7E-05 44.6 16.9 167 163-353 5-184 (299)
439 cd03213 ABCG_EPDR ABCG transpo 94.1 0.17 3.7E-06 50.1 7.8 26 174-199 34-59 (194)
440 PRK15429 formate hydrogenlyase 94.1 0.19 4E-06 60.5 9.5 46 154-199 376-423 (686)
441 TIGR02655 circ_KaiC circadian 94.1 0.31 6.6E-06 55.8 10.8 63 164-232 250-314 (484)
442 PTZ00494 tuzin-like protein; P 94.0 1.1 2.5E-05 48.6 13.8 159 153-322 370-544 (664)
443 PRK06995 flhF flagellar biosyn 94.0 0.22 4.9E-06 55.9 9.2 85 175-263 256-344 (484)
444 PF00625 Guanylate_kin: Guanyl 94.0 0.068 1.5E-06 52.4 4.7 37 175-214 2-38 (183)
445 PRK05688 fliI flagellum-specif 94.0 0.15 3.2E-06 56.6 7.6 87 173-264 166-269 (451)
446 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.19 4.1E-06 55.7 8.5 90 173-264 136-243 (449)
447 cd02024 NRK1 Nicotinamide ribo 94.0 0.037 8E-07 54.0 2.7 23 177-199 1-23 (187)
448 cd01125 repA Hexameric Replica 94.0 0.35 7.7E-06 49.7 10.1 23 177-199 3-25 (239)
449 cd02027 APSK Adenosine 5'-phos 94.0 0.25 5.5E-06 46.5 8.3 23 177-199 1-23 (149)
450 cd03215 ABC_Carb_Monos_II This 94.0 0.23 4.9E-06 48.7 8.3 26 174-199 25-50 (182)
451 TIGR01040 V-ATPase_V1_B V-type 94.0 0.2 4.3E-06 55.3 8.5 90 173-263 139-257 (466)
452 TIGR02902 spore_lonB ATP-depen 94.0 0.085 1.8E-06 60.9 6.0 45 155-199 66-110 (531)
453 PRK07721 fliI flagellum-specif 94.0 0.19 4E-06 56.1 8.4 87 173-263 156-258 (438)
454 PF10236 DAP3: Mitochondrial r 93.9 1.5 3.2E-05 46.9 15.0 49 303-351 258-306 (309)
455 TIGR01188 drrA daunorubicin re 93.9 0.38 8.3E-06 51.4 10.6 26 174-199 18-43 (302)
456 KOG3347 Predicted nucleotide k 93.9 0.086 1.9E-06 47.9 4.5 25 175-199 7-31 (176)
457 PRK09099 type III secretion sy 93.9 0.14 3.1E-06 56.7 7.4 88 173-264 161-264 (441)
458 TIGR00764 lon_rel lon-related 93.9 0.16 3.4E-06 59.5 8.1 75 154-233 18-92 (608)
459 TIGR01420 pilT_fam pilus retra 93.9 0.1 2.3E-06 56.7 6.3 111 174-294 121-232 (343)
460 TIGR03574 selen_PSTK L-seryl-t 93.9 0.15 3.2E-06 52.9 7.2 22 178-199 2-23 (249)
461 PRK06793 fliI flagellum-specif 93.9 0.3 6.6E-06 54.0 9.7 88 173-264 154-257 (432)
462 cd02028 UMPK_like Uridine mono 93.9 0.059 1.3E-06 52.6 3.8 23 177-199 1-23 (179)
463 cd02029 PRK_like Phosphoribulo 93.9 0.77 1.7E-05 47.1 11.8 75 177-254 1-85 (277)
464 COG4618 ArpD ABC-type protease 93.9 0.12 2.5E-06 56.8 6.2 26 174-199 361-386 (580)
465 cd03232 ABC_PDR_domain2 The pl 93.9 0.15 3.3E-06 50.4 6.9 25 174-198 32-56 (192)
466 PRK00409 recombination and DNA 93.8 0.03 6.6E-07 67.3 2.2 184 174-376 326-527 (782)
467 KOG0737 AAA+-type ATPase [Post 93.8 0.64 1.4E-05 49.2 11.4 31 174-207 126-156 (386)
468 COG0467 RAD55 RecA-superfamily 93.8 0.073 1.6E-06 55.6 4.7 41 174-217 22-62 (260)
469 cd01428 ADK Adenylate kinase ( 93.8 0.31 6.8E-06 48.2 9.1 22 178-199 2-23 (194)
470 TIGR02322 phosphon_PhnN phosph 93.8 0.049 1.1E-06 53.3 3.2 24 176-199 2-25 (179)
471 PRK07196 fliI flagellum-specif 93.8 0.19 4.2E-06 55.6 8.0 87 173-264 153-256 (434)
472 cd01122 GP4d_helicase GP4d_hel 93.8 0.41 9E-06 50.3 10.5 53 174-230 29-81 (271)
473 cd03236 ABC_RNaseL_inhibitor_d 93.8 0.3 6.4E-06 50.7 9.0 26 174-199 25-50 (255)
474 COG0003 ArsA Predicted ATPase 93.7 0.098 2.1E-06 55.6 5.5 49 175-226 2-50 (322)
475 CHL00081 chlI Mg-protoporyphyr 93.7 0.068 1.5E-06 57.4 4.4 46 154-199 17-62 (350)
476 TIGR01041 ATP_syn_B_arch ATP s 93.7 0.19 4.2E-06 56.0 8.0 91 173-264 139-249 (458)
477 PRK10751 molybdopterin-guanine 93.7 0.063 1.4E-06 51.5 3.6 26 174-199 5-30 (173)
478 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.093 2E-06 55.6 5.1 46 154-199 61-112 (358)
479 PRK00131 aroK shikimate kinase 93.7 0.057 1.2E-06 52.5 3.4 25 175-199 4-28 (175)
480 PF12061 DUF3542: Protein of u 93.7 0.098 2.1E-06 53.3 5.0 75 11-92 298-372 (402)
481 PRK13647 cbiO cobalt transport 93.7 0.28 6E-06 51.7 8.8 26 174-199 30-55 (274)
482 cd01134 V_A-ATPase_A V/A-type 93.7 0.33 7.1E-06 51.6 9.0 58 166-228 147-206 (369)
483 TIGR03496 FliI_clade1 flagella 93.6 0.17 3.7E-06 55.9 7.3 87 173-264 135-238 (411)
484 PF03308 ArgK: ArgK protein; 93.6 0.13 2.8E-06 51.9 5.8 64 162-226 14-79 (266)
485 cd00071 GMPK Guanosine monopho 93.6 0.054 1.2E-06 50.2 3.0 23 177-199 1-23 (137)
486 KOG0927 Predicted transporter 93.6 3.7 8E-05 45.9 17.1 232 8-288 279-563 (614)
487 cd03281 ABC_MSH5_euk MutS5 hom 93.6 0.077 1.7E-06 53.4 4.3 24 175-198 29-52 (213)
488 TIGR02030 BchI-ChlI magnesium 93.6 0.088 1.9E-06 56.6 4.9 46 154-199 4-49 (337)
489 PF13504 LRR_7: Leucine rich r 93.6 0.045 9.7E-07 30.1 1.4 16 581-596 2-17 (17)
490 KOG0924 mRNA splicing factor A 93.6 0.37 8E-06 54.4 9.6 134 163-306 361-527 (1042)
491 TIGR00073 hypB hydrogenase acc 93.6 0.073 1.6E-06 53.4 4.0 31 169-199 16-46 (207)
492 PRK14531 adenylate kinase; Pro 93.5 0.18 4E-06 49.4 6.7 24 176-199 3-26 (183)
493 cd02020 CMPK Cytidine monophos 93.5 0.051 1.1E-06 51.0 2.7 23 177-199 1-23 (147)
494 PF05970 PIF1: PIF1-like helic 93.5 0.14 3E-06 56.3 6.5 38 162-199 9-46 (364)
495 PF13245 AAA_19: Part of AAA d 93.5 0.16 3.5E-06 41.3 5.2 26 174-199 9-34 (76)
496 PF08477 Miro: Miro-like prote 93.5 0.059 1.3E-06 48.5 3.0 22 178-199 2-23 (119)
497 cd02021 GntK Gluconate kinase 93.5 0.051 1.1E-06 51.3 2.7 23 177-199 1-23 (150)
498 TIGR03522 GldA_ABC_ATP gliding 93.5 0.43 9.4E-06 51.0 10.0 26 174-199 27-52 (301)
499 COG1124 DppF ABC-type dipeptid 93.5 0.086 1.9E-06 52.4 4.2 26 174-199 32-57 (252)
500 PRK00889 adenylylsulfate kinas 93.5 0.071 1.5E-06 51.9 3.7 26 174-199 3-28 (175)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-103 Score=921.72 Aligned_cols=840 Identities=43% Similarity=0.693 Sum_probs=707.2
Q ss_pred hhHHhhhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHh
Q 035887 12 DALFNGCTNCTRRNAAYVSQLEDNLANLKTQLQKLIEAKDDVMTRVANAEQHQMRRLNKVQGWLSRVESVEAEVGELIRH 91 (886)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~l~~~~~~~ed~ld~ 91 (886)
+..++++.+.+.+++..+.++++.+..+++++..|+.++.| |+.++.+ ...+..|.+.+++++|+++|+++.
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888889999999999999999999999999888 4444332 366789999999999999999998
Q ss_pred hHHhhhc----------------ccccCcccCCcccccchHHHHHHHHHHHHHHHhcCCcccccc-cCCCCCcccCCCCC
Q 035887 92 STQEIDK----------------LCLGGYCSKNCQSSYNFGKKVSKKLQLMDTLMGEGAFDVVAE-KVPQPAVDERPLEP 154 (886)
Q Consensus 92 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 154 (886)
|..+... .|..++|.......+.+++++.+++++++.+..++.|..++. ..++.....+|..+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 8654321 233455666777778889999999999999988876766654 22333344455544
Q ss_pred cc-ccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 155 TI-VGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 155 ~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.. ||.+..++++++.|.+++..+++|+||||+||||||+.++|+...++.+|+.++||+||+.|+...++.+|++.++.
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 44 99999999999999998889999999999999999999999993389999999999999999999999999999987
Q ss_pred CC----CCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhc-cCccceEEccC
Q 035887 234 LE----NRSLEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGL-METQKKFKVEC 308 (886)
Q Consensus 234 ~~----~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~-~~~~~~~~l~~ 308 (886)
.. ..+.++++..|.+.|++|||+|||||||+..+|+.++.++| ...+||||++|||+++||.. |++...++++.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 44 33457899999999999999999999999999999999999 77889999999999999998 88889999999
Q ss_pred CChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhc-ccCCCCChhh
Q 035887 309 LGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRS-ASEFPGMEKE 387 (886)
Q Consensus 309 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~ 387 (886)
|+++|||.||++.++......+++++++|++|+++|+|+|||++++|++|+.+.+.++|+++.+.+.+. ..+.+++.+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999999886566777999999999999999999999999999999999999999999888 5666677789
Q ss_pred hhhhHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhhHHHHHHHHhcccccCC--
Q 035887 388 VYPLLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGYYIIGVLVQACLLEVGS-- 465 (886)
Q Consensus 388 i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~-- 465 (886)
++++|++||++||+ ++|.||+|||+||+||+|+++.||.+||||||+++.++...+++.|+.|+.+|+++||++...
T Consensus 397 i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 99999999999996 999999999999999999999999999999999997777899999999999999999999864
Q ss_pred -c--eEEeehhHHHHHHHHHhhhccccccEEEEcCcccCCCcccccccchhhhhccccceEEcCCCCCCCcceeeeecCc
Q 035887 466 -D--YVKMHDVIRDMALWIACEVEKENENFLVSAGVELTKPPEVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGIN 542 (886)
Q Consensus 466 -~--~~~mHdlv~d~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~ 542 (886)
+ +|+|||+|||+|.++|++.+..++++++..+.+....+....|...|++++++|.+..++....+++|++|.+.+|
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 3 9999999999999999998888888888887777777788888999999999999999998999999999999999
Q ss_pred c--ccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeeccccccccccc
Q 035887 543 R--LDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIP 620 (886)
Q Consensus 543 ~--l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp 620 (886)
. +..++..||..|+.|+||||++|..+..+|++|++|.|||||++++|.|+.||.++++|.+|.+||+..+..+..+|
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 5 78899999999999999999999899999999999999999999999999999999999999999999998777775
Q ss_pred cccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEee
Q 035887 621 RQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRR 700 (886)
Q Consensus 621 ~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 700 (886)
+++..|++||+|.+...... .+...+.++.+|++|+.+.++..+...+..+.....+.+..+.+.+.+
T Consensus 636 -~i~~~L~~Lr~L~l~~s~~~-----------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 636 -GILLELQSLRVLRLPRSALS-----------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred -chhhhcccccEEEeeccccc-----------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 44677999999999865411 445678889999999999988666533444444444444555555544
Q ss_pred cCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCC-CCCCccEEEeccCCccccCcccccCCCCcEEEE
Q 035887 701 CEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPY-GFNSLQRVTIACCSRLREVTWLVFAPNLKIVHI 779 (886)
Q Consensus 701 ~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~-~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L 779 (886)
+... ....++..+.+|+.|.|.+|...+. ...|... .... .|+++.++.+.+|.....+.|....|+|+.|.+
T Consensus 704 ~~~~--~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 704 CSKR--TLISSLGSLGNLEELSILDCGISEI-VIEWEES---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL 777 (889)
T ss_pred cccc--eeecccccccCcceEEEEcCCCchh-hcccccc---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEE
Confidence 3221 1223678899999999999977642 2233221 1111 378999999999999999999999999999999
Q ss_pred ecCccchhhccccccCCC--CCCCCCCcccEE-eccccccccccccCcCCCCCccEEeeccCCCCCCCCCCCCCCC--C-
Q 035887 780 ESCYDMDEIISAWKLGEV--PGLNPFAKLQYL-RLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLDINSAK--E- 853 (886)
Q Consensus 780 ~~~~~l~~i~~~~~~~~~--~~~~~fp~L~~L-~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~--l- 853 (886)
..|+.++++++....... .....|+++..+ .+.+.+.+..+......+|+|+.+.+..||++..+|....... .
T Consensus 778 ~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~ 857 (889)
T KOG4658|consen 778 VSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCE 857 (889)
T ss_pred ecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccc
Confidence 999999998764322111 124567777777 5888888888888888899999999999999999999755443 2
Q ss_pred CceEEEccccccccceeccccccccc
Q 035887 854 GKTVIRGDQHWWNELKWEDEATLNAF 879 (886)
Q Consensus 854 ~~l~i~~~~~~~~~l~~~~~~~~~~~ 879 (886)
..+....+.+|-+.+.|++++.+..|
T Consensus 858 ~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 858 EKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cceeecCCccceeeEEehhhhhhhhc
Confidence 23444466678899999999988776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.7e-66 Score=639.53 Aligned_cols=641 Identities=21% Similarity=0.305 Sum_probs=455.6
Q ss_pred CccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe---CCC-----------
Q 035887 154 PTIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV---SKD----------- 217 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---s~~----------- 217 (886)
+.+|||++.++++..+|.- +++++|+||||||+||||||+++|++. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 4689999999999988853 578999999999999999999999987 678998888742 111
Q ss_pred CC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhh
Q 035887 218 MQ-LESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCG 296 (886)
Q Consensus 218 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~ 296 (886)
++ ...++.+++.++.......... ...+++.++++|+||||||||+..+|+.+..... +.+.||+||||||++.++.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcHHHHH
Confidence 11 2245555555553322111111 2457788999999999999999999998876655 6688999999999999998
Q ss_pred ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 035887 297 LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRR 376 (886)
Q Consensus 297 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 376 (886)
.++..+.|+++.|++++||+||+++||... .+++++.+++++|+++|+|+|||++++|+.|++ ++..+|+.+++.++.
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRN 416 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 878889999999999999999999999765 344568899999999999999999999999998 578999999999876
Q ss_pred cccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhhHHHHHHH
Q 035887 377 SASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGYYIIGVLV 456 (886)
Q Consensus 377 ~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~ 456 (886)
.. +.+|..+|++||+.|+++..|.||+++|+||.++.++ .+..|++.+.+... ..++.|+
T Consensus 417 ~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~-----------~~l~~L~ 476 (1153)
T PLN03210 417 GL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN-----------IGLKNLV 476 (1153)
T ss_pred Cc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch-----------hChHHHH
Confidence 43 3479999999999998745899999999999887654 47788887655432 2288999
Q ss_pred HhcccccCCceEEeehhHHHHHHHHHhhhccc--cccEEEEcC---------ccc----------CCC-------ccccc
Q 035887 457 QACLLEVGSDYVKMHDVIRDMALWIACEVEKE--NENFLVSAG---------VEL----------TKP-------PEVRK 508 (886)
Q Consensus 457 ~~sll~~~~~~~~mHdlv~d~a~~i~~~~~~~--~~~~~~~~~---------~~~----------~~~-------~~~~~ 508 (886)
++||++..++.++|||++|+||+++++++..+ +..++.... .+. ... .....
T Consensus 477 ~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~ 556 (1153)
T PLN03210 477 DKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG 556 (1153)
T ss_pred hcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence 99999887669999999999999999775321 122222110 000 000 00111
Q ss_pred cc-------------------------------chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCC
Q 035887 509 WE-------------------------------DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPS 557 (886)
Q Consensus 509 ~~-------------------------------~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~ 557 (886)
+. ++|.|.+.++.+..+|....+.+|+.|++.++.+..++.. +..+++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~ 635 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTG 635 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCC
Confidence 22 2444444444444455545556777777777766666554 466777
Q ss_pred CcEEEccCCCcccccCccccCccCCCEEeccCC-CccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEec
Q 035887 558 LKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET-SIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRML 636 (886)
Q Consensus 558 Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 636 (886)
|++|+|+++..+..+| .++.+.+|++|+|++| .+.++|.++++|++|++|++++|..+..+|.+ + ++++|++|++.
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Ls 712 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLS 712 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCC
Confidence 8888887775667777 4777788888888776 56778888888888888888887777778875 3 67888888888
Q ss_pred cCCCccccccccccc---CCccchHHHh---cCCcCCceEEEEeccchhh----hhh-hcccccccccceEEEeecCCCC
Q 035887 637 DCGYSRKIAEDSVQF---GGSEILVEEL---ITLEHLNVLSVTLKSFGAL----QRL-LSCQQLHSSTRALELRRCEDSK 705 (886)
Q Consensus 637 ~~~~~~~~~~~~~~~---~~~~~~~~~l---~~L~~L~~L~~~~~~~~~~----~~l-~~~~~~~~~L~~L~l~~~~~~~ 705 (886)
+|.....+|...... .-....+..+ ..+++|..|.+.......+ ..+ +......++|+.|++++|+...
T Consensus 713 gc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 713 GCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred CCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence 776554433210000 0000001111 1223333333321100000 000 0011123578888888877666
Q ss_pred ccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccc
Q 035887 706 SWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDM 785 (886)
Q Consensus 706 ~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l 785 (886)
.+|. ++.++++|+.|++++|..++.++.. ..+++|+.|+|++|..+..+|.+ .++|+.|+|+++ .+
T Consensus 793 ~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~----------~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i 858 (1153)
T PLN03210 793 ELPS-SIQNLHKLEHLEIENCINLETLPTG----------INLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GI 858 (1153)
T ss_pred ccCh-hhhCCCCCCEEECCCCCCcCeeCCC----------CCccccCEEECCCCCcccccccc--ccccCEeECCCC-CC
Confidence 6664 5777888888888888877765322 24778888888888877766643 467888888876 56
Q ss_pred hhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCC
Q 035887 786 DEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLD 847 (886)
Q Consensus 786 ~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 847 (886)
+.++. .+..+++|+.|.|++|++|+.++.....+++|+.|++.+|++|+.++..
T Consensus 859 ~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 859 EEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred ccChH--------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 66653 5678999999999999999999888888899999999999999887664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.5e-45 Score=389.54 Aligned_cols=277 Identities=37% Similarity=0.639 Sum_probs=230.9
Q ss_pred chhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-
Q 035887 159 LDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE- 235 (886)
Q Consensus 159 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~- 235 (886)
||.++++|.+.|.+ ++.++|+|+||||+||||||+.++++. ..+.+|+.++|+.++...+...++.+|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 789999999999999999999999996 46899999999999999999999999999998773
Q ss_pred ----CCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhccCc-cceEEccCCC
Q 035887 236 ----NRSLEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGLMET-QKKFKVECLG 310 (886)
Q Consensus 236 ----~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~~-~~~~~l~~L~ 310 (886)
..+..+....+++.|+++++||||||||+...|+.+...++ ....|++||||||+..++..+.. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 45788899999999999999999999999999999888877 66779999999999999877654 6789999999
Q ss_pred hHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhcccCCCCChhhhhh
Q 035887 311 DNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRSASEFPGMEKEVYP 390 (886)
Q Consensus 311 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~ 390 (886)
.+||++||++.++.......+.+.+.+++|+++|+|+|||++++|++|+.+.+..+|+.+++.+........+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999976542344566788999999999999999999999976667789999999888876544444568999
Q ss_pred hHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCc
Q 035887 391 LLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGY 438 (886)
Q Consensus 391 ~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 438 (886)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|||...
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999 899999999999999999999999999999999875
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.6e-23 Score=220.54 Aligned_cols=324 Identities=21% Similarity=0.311 Sum_probs=216.2
Q ss_pred cEEEEcCcccCCCc-ccccccchhhhhccccceEEcC-CCCCCCcceeeeecCcccc--ccChhhhcCCCCCcEEEccCC
Q 035887 491 NFLVSAGVELTKPP-EVRKWEDRRKISLMRNKIVILS-KPPACPRLLTLFLGINRLD--TISSDFFDFMPSLKVLNLSKN 566 (886)
Q Consensus 491 ~~~~~~~~~~~~~~-~~~~~~~~r~l~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~--~~~~~~~~~l~~Lr~L~Ls~~ 566 (886)
.|+......+..+| ....+.++.||++..|++..+. ....++.||++.+..|+++ ++|++ +-.+.-|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence 55555555555444 5677889999999999886543 3478899999999999665 67887 456899999999999
Q ss_pred CcccccCccccCccCCCEEeccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCccccc
Q 035887 567 RSLSQLPSGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIA 645 (886)
Q Consensus 567 ~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 645 (886)
.+...|..+..-+++-.|+||+|+|..+|.. +-+|+.|-+|||++|+ +..+|+. +..|..|++|.+++|+...
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~h--- 187 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNH--- 187 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhH---
Confidence 8999999999999999999999999999988 6789999999999986 8999998 8999999999999887542
Q ss_pred ccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeecc
Q 035887 646 EDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAY 725 (886)
Q Consensus 646 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~ 725 (886)
..+..|.++++|+.|+.+... ..+..++.....+.+|+.++++.+. +..+|. -+-++.+|+.|++++
T Consensus 188 ----------fQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPe-cly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 188 ----------FQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN-LPIVPE-CLYKLRNLRRLNLSG 254 (1255)
T ss_pred ----------HHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC-CCcchH-HHhhhhhhheeccCc
Confidence 245556667777777766332 2233333333344566666776543 333332 345667777777776
Q ss_pred CCCcceEEeccc-------------cccCccC-CCCCCCccEEEeccCC-ccccCc-ccccCCCCcEEEEecCccchhhc
Q 035887 726 CTSLEVLRVNYA-------------EVRTTRE-PYGFNSLQRVTIACCS-RLREVT-WLVFAPNLKIVHIESCYDMDEII 789 (886)
Q Consensus 726 ~~~l~~l~~~~~-------------~~~~~~~-~~~~~~L~~L~L~~c~-~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~ 789 (886)
. .++.+..... .....|. .-.+++|++|++.+|. ....+| .+|++-+|++++..++ .++-++
T Consensus 255 N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVP 332 (1255)
T KOG0444|consen 255 N-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVP 332 (1255)
T ss_pred C-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCc
Confidence 3 3443332211 0000010 0134455555555442 112233 3555555555555554 444443
Q ss_pred cccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCC
Q 035887 790 SAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLP 845 (886)
Q Consensus 790 ~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 845 (886)
. ++..+++|+.|.|+. ..|-.+|..+.-+|-|+.|++.+.|+|.--|
T Consensus 333 E--------glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 333 E--------GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred h--------hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 2 566777777777744 6677777666667777777777777776443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=7e-21 Score=238.13 Aligned_cols=327 Identities=19% Similarity=0.163 Sum_probs=195.0
Q ss_pred cccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEec
Q 035887 508 KWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNL 587 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 587 (886)
.++++++|++.+|.+........+++|++|++++|.+....+..+..+++|++|+|++|.....+|..++++.+|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45677777777777653222345777888888887766444444777888888888887434567777888888888888
Q ss_pred cCCCcc-ccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcC
Q 035887 588 SETSIK-ELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEH 666 (886)
Q Consensus 588 ~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 666 (886)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|...+. ....+.++++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~ 261 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP-------------IPSSLGNLKN 261 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccc-------------cChhHhCCCC
Confidence 887765 56777888888888888887755567765 77888888888877765432 2234566677
Q ss_pred CceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCC
Q 035887 667 LNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPY 746 (886)
Q Consensus 667 L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~ 746 (886)
|+.|.+..+.+.. .++......++|+.|++++|......+. .+..+++|+.|+++++.-...+ +... .
T Consensus 262 L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~-~~~~--------~ 329 (968)
T PLN00113 262 LQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKI-PVAL--------T 329 (968)
T ss_pred CCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcC-ChhH--------h
Confidence 7777766544321 1111112235677777776653333332 4556677777777665322211 1111 2
Q ss_pred CCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhcccccc----------------CCC-CCCCCCCcccE
Q 035887 747 GFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKL----------------GEV-PGLNPFAKLQY 808 (886)
Q Consensus 747 ~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~----------------~~~-~~~~~fp~L~~ 808 (886)
.+++|+.|+|++|.....+| .++.+++|+.|++++|..-..++. ... +.. ..+..+++|+.
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 45666667766665444444 456666666666666532222111 000 000 13445677777
Q ss_pred EeccccccccccccCcCCCCCccEEeeccCCCCCCCCCCCCCCC-CCceEEEcc
Q 035887 809 LRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLDINSAK-EGKTVIRGD 861 (886)
Q Consensus 809 L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~-l~~l~i~~~ 861 (886)
|.|+++.-...++.....+++|+.|++++|.--..+|......+ |+.+.+.++
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 77777654444444455677788888877643334444322222 666666654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=4.4e-20 Score=230.79 Aligned_cols=306 Identities=22% Similarity=0.262 Sum_probs=153.9
Q ss_pred CCCCcceeeeecCccc-------cccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhc
Q 035887 529 PACPRLLTLFLGINRL-------DTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKA 601 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l-------~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~ 601 (886)
..+++|+.|.+..+.. ..+|..+..-..+||+|++.++ .+..+|..+ .+.+|+.|+++++++..+|.++..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 4566666666644321 1233332222234666666665 556666555 345666666666666666666666
Q ss_pred cCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhh
Q 035887 602 LTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQ 681 (886)
Q Consensus 602 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~ 681 (886)
+++|+.|++++|..+..+|. ++.+++|++|++.+|.....+| ..+.+|++|+.|.+..+. .+.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp-------------~si~~L~~L~~L~L~~c~--~L~ 695 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP-------------SSIQYLNKLEDLDMSRCE--NLE 695 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc-------------hhhhccCCCCEEeCCCCC--CcC
Confidence 66666666665555555554 5556666666666555443222 123344444444443211 111
Q ss_pred hhhcccccccccceEEEeecCCCCccccc------------------cccccCccceEeeccCCCcceEEeccccccCcc
Q 035887 682 RLLSCQQLHSSTRALELRRCEDSKSWNIL------------------SIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTR 743 (886)
Q Consensus 682 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~ 743 (886)
.++... ..++|+.|.+++|..+..++.. ....+++|.+|.+.++...+ +....... ...
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~-l~~~~~~l-~~~ 772 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK-LWERVQPL-TPL 772 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhh-cccccccc-chh
Confidence 221111 1234444555444333222210 00012233333332211100 00000000 000
Q ss_pred CCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccc------
Q 035887 744 EPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTK------ 816 (886)
Q Consensus 744 ~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~------ 816 (886)
....+++|+.|+|++|+.+..+| .++.+++|+.|+|++|..++.++. . ..+++|+.|.|++|..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--------~-~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--------G-INLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC--------C-CCccccCEEECCCCCccccccc
Confidence 01123456666666665555544 355566666666666655555432 1 1344455555554444
Q ss_pred --------------ccccccCcCCCCCccEEeeccCCCCCCCCCCCCCCC-CCceEEEcccccc
Q 035887 817 --------------LKIIFRNALPFPNLLELFVSECPNLKKLPLDINSAK-EGKTVIRGDQHWW 865 (886)
Q Consensus 817 --------------L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~-l~~l~i~~~~~~~ 865 (886)
++.+|.....+++|+.|++.+|++|+.+|....... |+.+.+.+|..+.
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 444555556689999999999999999999876666 8888999998764
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=4.5e-20 Score=230.88 Aligned_cols=340 Identities=19% Similarity=0.174 Sum_probs=173.6
Q ss_pred ccchhhhhccccceE-EcCC-CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEe
Q 035887 509 WEDRRKISLMRNKIV-ILSK-PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLN 586 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~-~l~~-~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 586 (886)
+.++++|++.+|.+. .+|. ..++++|++|++++|.+....+..+.++++|++|+|++|.....+|..++++.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 456777777777664 2332 35667777777777765543344466777777777777743445677777777777777
Q ss_pred ccCCCcc-ccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCccccccccccc-----------CCc
Q 035887 587 LSETSIK-ELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQF-----------GGS 654 (886)
Q Consensus 587 L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~ 654 (886)
|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.....+|..+... .-.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 7777665 56777777777777777777644456654 6677777777777665443222111000 000
Q ss_pred cchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCc-----
Q 035887 655 EILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSL----- 729 (886)
Q Consensus 655 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l----- 729 (886)
......+.++++|+.|++..+..... .+......++|+.|++++|......+. .+..+++|+.|+++++.-.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCCh
Confidence 01122234455555555544332210 111112234566666666543333332 4455666666666654211
Q ss_pred --------ceEEeccccccCc-c-CCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCC
Q 035887 730 --------EVLRVNYAEVRTT-R-EPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVP 798 (886)
Q Consensus 730 --------~~l~~~~~~~~~~-~-~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 798 (886)
+.+....+..... + ....+++|+.|++.+|.....+| .+..+++|+.|++++|. +...+. .
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-------~ 446 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN-------S 446 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-------h
Confidence 1111111110000 0 01234455555555554333333 34455555555555553 222111 1
Q ss_pred CCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCCCCCCC-CCceEEEcc
Q 035887 799 GLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLDINSAK-EGKTVIRGD 861 (886)
Q Consensus 799 ~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~-l~~l~i~~~ 861 (886)
....+++|+.|+|++|.-...++... ..++|+.|++++|.--..+|....... |+.+.++++
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 23456666777766655444443322 246677777777654445554433333 555555543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=9.6e-21 Score=201.25 Aligned_cols=301 Identities=19% Similarity=0.206 Sum_probs=173.0
Q ss_pred cccchhhhhccccceEE--c-CCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccc-cCccCCC
Q 035887 508 KWEDRRKISLMRNKIVI--L-SKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQ 583 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~--l-~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i-~~L~~L~ 583 (886)
.++.+|.+.+..|+++. + +++.++..|.+|+++.|.++.+|.. +..-+++-+|+||+| .|+.+|.++ -+|..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHh
Confidence 34566777777666643 2 2346777778888888777777766 666777778888877 777777654 3577777
Q ss_pred EEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcc-ccccccccc----------C
Q 035887 584 YLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSR-KIAEDSVQF----------G 652 (886)
Q Consensus 584 ~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~----------~ 652 (886)
+||||+|++..||..+..|.+|++|+|++|+. ....-.-+..+++|++|++++...+- .+|..+.+. +
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 78888888888887777788888888877752 21110002345666667666554321 222210000 0
Q ss_pred CccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceE
Q 035887 653 GSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVL 732 (886)
Q Consensus 653 ~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l 732 (886)
........+-++.+|+.|+++.+.+..+.. ......+|++|+++.+. ++.+|. .+.+++.|+.|.+.+. .+.
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLNlSrNQ-Lt~LP~-avcKL~kL~kLy~n~N-kL~-- 304 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKITELNM---TEGEWENLETLNLSRNQ-LTVLPD-AVCKLTKLTKLYANNN-KLT-- 304 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCceeeeec---cHHHHhhhhhhccccch-hccchH-HHhhhHHHHHHHhccC-ccc--
Confidence 001122223333344444433332221110 01112244444444432 233332 3444555555554331 221
Q ss_pred EeccccccCccCCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEec
Q 035887 733 RVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRL 811 (886)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L 811 (886)
.+.. .+..+.+.+|+.+...+| .+.-+| .+..++.|+.|.|+.+..++ ++. .+.-+|-|+.|++
T Consensus 305 -FeGi----PSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-LPe--------aIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 305 -FEGI----PSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-LPE--------AIHLLPDLKVLDL 369 (1255)
T ss_pred -ccCC----ccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-chh--------hhhhcCCcceeec
Confidence 1111 123356888999988887 677666 68999999999999886554 443 6778999999999
Q ss_pred cccccccccccCcCCCCCccEEe
Q 035887 812 QVLTKLKIIFRNALPFPNLLELF 834 (886)
Q Consensus 812 ~~~~~L~~i~~~~~~~p~L~~L~ 834 (886)
...|+|.--|....+-.+|+.-+
T Consensus 370 reNpnLVMPPKP~da~~~lefYN 392 (1255)
T KOG0444|consen 370 RENPNLVMPPKPNDARKKLEFYN 392 (1255)
T ss_pred cCCcCccCCCCcchhhhcceeee
Confidence 99999987654333333444433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=5.8e-20 Score=194.51 Aligned_cols=327 Identities=19% Similarity=0.229 Sum_probs=197.2
Q ss_pred ccccchhhhhccccceEEcCCCCCC-CcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCE
Q 035887 507 RKWEDRRKISLMRNKIVILSKPPAC-PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQY 584 (886)
Q Consensus 507 ~~~~~~r~l~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~ 584 (886)
.++.+++.+++..|.+..+|..... .+|+.|+|..|.+.++....++.++.||+||||.| .|..+|. ++..=.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 3455777777777777777766443 45888888888887777777778888888888888 7777763 4555568888
Q ss_pred EeccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcC
Q 035887 585 LNLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELIT 663 (886)
Q Consensus 585 L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (886)
|+|++|.|+.+-.+ +..|.+|.+|.|+.|+ ++.+|...+.+|++|+.|++..|.+-. . ..-.++.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iri----------v---e~ltFqg 243 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRI----------V---EGLTFQG 243 (873)
T ss_pred EeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceee----------e---hhhhhcC
Confidence 88888888877543 7778888888888886 678888777778888888887765421 0 1122455
Q ss_pred CcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeecc-------------CCCcc
Q 035887 664 LEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAY-------------CTSLE 730 (886)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~-------------~~~l~ 730 (886)
|++|+.|.+.-+++..++. ..+..+..++.|+|+.+. +..+....+-+++.|+.|+++. |+.|+
T Consensus 244 L~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred chhhhhhhhhhcCcccccC--cceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 5555555555444443332 122233466666666553 3333333455566666666653 22233
Q ss_pred eEEeccccccCccC--CCCCCCccEEEeccCCccccCc--ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcc
Q 035887 731 VLRVNYAEVRTTRE--PYGFNSLQRVTIACCSRLREVT--WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKL 806 (886)
Q Consensus 731 ~l~~~~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L 806 (886)
.++++.+.....+. ...++.|+.|.|+.| .+..+. .+..+.+|+.|+|+++. +.-.+.. ....+.++|+|
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IED----aa~~f~gl~~L 394 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED----AAVAFNGLPSL 394 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec----chhhhccchhh
Confidence 33222222211110 123455555555555 233322 24455667777766652 2222211 11345678999
Q ss_pred cEEeccccccccccccC-cCCCCCccEEeeccCCCCCCCCCC-CCCCCCCceEEE
Q 035887 807 QYLRLQVLTKLKIIFRN-ALPFPNLLELFVSECPNLKKLPLD-INSAKEGKTVIR 859 (886)
Q Consensus 807 ~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~-~~~~~l~~l~i~ 859 (886)
+.|.|.| .+++.|+.. ...++.||+|++.+. -+.++... .....|+++.+.
T Consensus 395 rkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 395 RKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hheeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence 9999988 788888753 335888999998875 45555332 222225555444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-17 Score=176.94 Aligned_cols=278 Identities=21% Similarity=0.276 Sum_probs=174.2
Q ss_pred cccchhhhhccccceEEcCCC--CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCE
Q 035887 508 KWEDRRKISLMRNKIVILSKP--PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQY 584 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~ 584 (886)
.+..+|.++++.|.+..++.. +.-.+++.|+|.+|.++.+..+.|.++..|-+|.|+.| .++.+|. .|.+|++|+.
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 345788888888888776544 55568888888888888887777888888888888888 7777774 4556888888
Q ss_pred EeccCCCcccc-chhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcC
Q 035887 585 LNLSETSIKEL-PHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELIT 663 (886)
Q Consensus 585 L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (886)
|+|..|.|+.. ...+..|.+|+.|.+..|. +..+.+|++..|.++++|++..|.... . .-+-+-+
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~----------v---n~g~lfg 291 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQA----------V---NEGWLFG 291 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhh----------h---hcccccc
Confidence 88888888766 4567888888888888775 677888888888888888888776532 0 1122455
Q ss_pred CcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCcc
Q 035887 664 LEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTR 743 (886)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~ 743 (886)
|+.|+.|+++.+.+..+.. ..-.+...|+.|+|+.+. ++.++..++..+..|+.|.++.. .+..+.-..
T Consensus 292 Lt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~a------- 360 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGA------- 360 (873)
T ss_pred cchhhhhccchhhhheeec--chhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHhhH-------
Confidence 6667777777665544321 222344577777777664 45555445666667777776652 222221111
Q ss_pred CCCCCCCccEEEeccCCccccC----cccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccc
Q 035887 744 EPYGFNSLQRVTIACCSRLREV----TWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKI 819 (886)
Q Consensus 744 ~~~~~~~L~~L~L~~c~~l~~l----~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~ 819 (886)
...+++|+.|+|+.|...-.+ -.+..+|+|+.|.+.++ .++.+.. ..+.+|++|++|+|-+ .-+.+
T Consensus 361 -f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k-------rAfsgl~~LE~LdL~~-NaiaS 430 (873)
T KOG4194|consen 361 -FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK-------RAFSGLEALEHLDLGD-NAIAS 430 (873)
T ss_pred -HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecch-------hhhccCcccceecCCC-Cccee
Confidence 113555666655554221111 12334566666666555 4555543 2344556666666654 23444
Q ss_pred cc
Q 035887 820 IF 821 (886)
Q Consensus 820 i~ 821 (886)
|.
T Consensus 431 Iq 432 (873)
T KOG4194|consen 431 IQ 432 (873)
T ss_pred ec
Confidence 43
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=5.9e-17 Score=164.79 Aligned_cols=320 Identities=22% Similarity=0.272 Sum_probs=182.6
Q ss_pred CcccccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCC
Q 035887 503 PPEVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSL 582 (886)
Q Consensus 503 ~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L 582 (886)
++....+.++..+.++.|++..+|..+.|+.|..|.+..|.++.+|....+++.+|.+|||.+| .+++.|..++.|.+|
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 4556667778888888888888888888888888888888888888877778888888888888 888888888888888
Q ss_pred CEEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCC--CCEEEec-cCC-CcccccccccccCCccchH
Q 035887 583 QYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSG--LEVLRML-DCG-YSRKIAEDSVQFGGSEILV 658 (886)
Q Consensus 583 ~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~--L~~L~l~-~~~-~~~~~~~~~~~~~~~~~~~ 658 (886)
.+||+++|.|+.+|-++++| +|+.|-+.||+ +..+-.+++.+-+. |++|+-. .|. .+..-..............
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 88888888888888888888 88888888886 56665554433221 3333210 000 0000000000000001112
Q ss_pred HHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEecccc
Q 035887 659 EELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAE 738 (886)
Q Consensus 659 ~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~ 738 (886)
.....+-+.+.|.++......++.-..-..-..-....+++.+. +.++|. .+..+..+.+.-+.....+ +|..
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk-~L~~lkelvT~l~lsnn~i-----sfv~ 428 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPK-RLVELKELVTDLVLSNNKI-----SFVP 428 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-Hhhhhh-hhHHHHHHHHHHHhhcCcc-----ccch
Confidence 22223334445554433322222110000000123444555442 122221 1222222222112111111 1111
Q ss_pred ccCccCCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhcc-------------c-cccCCC--CCCC
Q 035887 739 VRTTREPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIIS-------------A-WKLGEV--PGLN 801 (886)
Q Consensus 739 ~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~-------------~-~~~~~~--~~~~ 801 (886)
.....+++|..|+|++| .+.++| .++.+-.|+.|+|+.++ ...++. . ...+.+ .+++
T Consensus 429 ----~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 429 ----LELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ----HHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 01125677777777776 444555 46666667777777662 222221 0 001111 3467
Q ss_pred CCCcccEEeccccccccccccCcCCCCCccEEeeccCC
Q 035887 802 PFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECP 839 (886)
Q Consensus 802 ~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 839 (886)
...+|..|+|.+ ..+..+|...+.|.+|++|++.|.|
T Consensus 503 nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 888999999977 7799999888999999999999865
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=3.7e-17 Score=166.29 Aligned_cols=261 Identities=25% Similarity=0.340 Sum_probs=144.3
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeeccc
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEY 612 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~ 612 (886)
.+..|.++.|.+..+.++ ..++..|.+|+++++ .+..+|+.|+.+..++.|+.+.+++.++|+.++.+.+|.+|+.++
T Consensus 46 ~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRED-LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHh-hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 455556666655554444 556666777777777 666677777777777777777777777777777777777777766
Q ss_pred cccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccc
Q 035887 613 TRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSS 692 (886)
Q Consensus 613 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~ 692 (886)
|. +..+|++ ++.+..|..|+..+|.... ..+...++.+|..+.+..+.
T Consensus 124 n~-~~el~~~-i~~~~~l~dl~~~~N~i~s--------------lp~~~~~~~~l~~l~~~~n~---------------- 171 (565)
T KOG0472|consen 124 NE-LKELPDS-IGRLLDLEDLDATNNQISS--------------LPEDMVNLSKLSKLDLEGNK---------------- 171 (565)
T ss_pred cc-eeecCch-HHHHhhhhhhhcccccccc--------------CchHHHHHHHHHHhhccccc----------------
Confidence 65 4556665 6666666666666554432 11222222222222222111
Q ss_pred cceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcccccCC
Q 035887 693 TRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVFAP 772 (886)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~ 772 (886)
....+. ..-+++.|++|+... .-++.++++. ..+.+|..|+|+.+ ++..+|.++.+.
T Consensus 172 -----------l~~l~~-~~i~m~~L~~ld~~~-N~L~tlP~~l---------g~l~~L~~LyL~~N-ki~~lPef~gcs 228 (565)
T KOG0472|consen 172 -----------LKALPE-NHIAMKRLKHLDCNS-NLLETLPPEL---------GGLESLELLYLRRN-KIRFLPEFPGCS 228 (565)
T ss_pred -----------hhhCCH-HHHHHHHHHhcccch-hhhhcCChhh---------cchhhhHHHHhhhc-ccccCCCCCccH
Confidence 111111 111245555555422 2233333222 24566666666665 555566666666
Q ss_pred CCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCCCCCCC
Q 035887 773 NLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLDINSAK 852 (886)
Q Consensus 773 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~ 852 (886)
.|++|++..+ .++.++. .....+++|..|+|++ .++++.|.+..-+.+|++|++++ ..+..+|....+.+
T Consensus 229 ~L~Elh~g~N-~i~~lpa-------e~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlh 298 (565)
T KOG0472|consen 229 LLKELHVGEN-QIEMLPA-------EHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLH 298 (565)
T ss_pred HHHHHHhccc-HHHhhHH-------HHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccce
Confidence 6666666555 4555543 2344666666666666 56666666666666666666666 35666666555444
Q ss_pred CCceEEEc
Q 035887 853 EGKTVIRG 860 (886)
Q Consensus 853 l~~l~i~~ 860 (886)
|..+.+.|
T Consensus 299 L~~L~leG 306 (565)
T KOG0472|consen 299 LKFLALEG 306 (565)
T ss_pred eeehhhcC
Confidence 44444443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.4e-13 Score=159.94 Aligned_cols=265 Identities=19% Similarity=0.145 Sum_probs=134.7
Q ss_pred HHHHHhhhccccccEEEEcCcccCCCcccccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCC
Q 035887 478 ALWIACEVEKENENFLVSAGVELTKPPEVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPS 557 (886)
Q Consensus 478 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~ 557 (886)
|....+++..++...+......+...|. ....+++.|.+..|++..+|.. .++|++|++++|.++.+|.. .++
T Consensus 191 a~~r~~~Cl~~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~s 263 (788)
T PRK15387 191 VVQKMRACLNNGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPG 263 (788)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccc
Confidence 3333333333333444444434433332 1123566677777766666542 46677777777766666542 346
Q ss_pred CcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEecc
Q 035887 558 LKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLD 637 (886)
Q Consensus 558 Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 637 (886)
|+.|++++| .+..+|.. ..+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++.+
T Consensus 264 L~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSN-PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYN 331 (788)
T ss_pred cceeeccCC-chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----ccccccccccc
Confidence 677777776 56666642 24566677777777777652 3567777777664 4555541 23455666665
Q ss_pred CCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCc
Q 035887 638 CGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKY 717 (886)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 717 (886)
|.... +|. + ..+|+.|+++.+.+..++.+ ..+|+.|+++++. +..++. + +.+
T Consensus 332 N~L~~-LP~--------------l--p~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~-L~~LP~--l--~~~ 383 (788)
T PRK15387 332 NQLTS-LPT--------------L--PSGLQELSVSDNQLASLPTL------PSELYKLWAYNNR-LTSLPA--L--PSG 383 (788)
T ss_pred Ccccc-ccc--------------c--ccccceEecCCCccCCCCCC------Ccccceehhhccc-cccCcc--c--ccc
Confidence 54321 110 0 12455555555444433321 2345555555442 222221 1 234
Q ss_pred cceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccchhhccccccCCC
Q 035887 718 LNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEIISAWKLGEV 797 (886)
Q Consensus 718 L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 797 (886)
|+.|+++++ .++.+ |. .+++|+.|++++| .+..+|.+ +.+|+.|++++| .++.++.
T Consensus 384 L~~LdLs~N-~Lt~L----------P~--l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~------- 439 (788)
T PRK15387 384 LKELIVSGN-RLTSL----------PV--LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE------- 439 (788)
T ss_pred cceEEecCC-cccCC----------CC--cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh-------
Confidence 555665543 22211 11 2345666666666 34444422 245666666665 3555543
Q ss_pred CCCCCCCcccEEecccc
Q 035887 798 PGLNPFAKLQYLRLQVL 814 (886)
Q Consensus 798 ~~~~~fp~L~~L~L~~~ 814 (886)
.+..+++|+.|+|+++
T Consensus 440 -sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 440 -SLIHLSSETTVNLEGN 455 (788)
T ss_pred -HHhhccCCCeEECCCC
Confidence 3455666666666664
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=4.7e-16 Score=174.18 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=41.2
Q ss_pred ccccchhhhhccccceEEcCCC-CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC
Q 035887 507 RKWEDRRKISLMRNKIVILSKP-PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP 573 (886)
Q Consensus 507 ~~~~~~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp 573 (886)
....+++.+.++.|.+...|.. .++.+|.+|.|.+|.+..+|.+ +..+++|.+||+|+| .+...|
T Consensus 65 t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N-~f~~~P 130 (1081)
T KOG0618|consen 65 TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFN-HFGPIP 130 (1081)
T ss_pred hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh-HHhhhcccccccchh-ccCCCc
Confidence 3445677777777766655532 5666777777777766666655 566777777777766 444333
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=1.3e-14 Score=172.32 Aligned_cols=305 Identities=25% Similarity=0.313 Sum_probs=202.4
Q ss_pred cccchhhhhccccc--eEEcCC--CCCCCcceeeeecCc-cccccChhhhcCCCCCcEEEccCCCcccccCccccCccCC
Q 035887 508 KWEDRRKISLMRNK--IVILSK--PPACPRLLTLFLGIN-RLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSL 582 (886)
Q Consensus 508 ~~~~~r~l~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~-~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L 582 (886)
..++++.|-+..|. +..++. ...++.||+|++++| .+..+|.. ++.+-+||||+|+++ .+..+|.++++|..|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHHhh
Confidence 34468888888775 444444 467999999999988 56677765 899999999999999 899999999999999
Q ss_pred CEEeccCC-CccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHh
Q 035887 583 QYLNLSET-SIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEEL 661 (886)
Q Consensus 583 ~~L~L~~~-~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 661 (886)
.|||+..+ .+..+|..+..|++|++|.+.... .......++.+.+|++|....+.... ...+..+
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s------------~~~~e~l 686 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS------------VLLLEDL 686 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch------------hHhHhhh
Confidence 99999998 455666667779999999998764 11111225555666666555443221 1233334
Q ss_pred cCCcCCceEEEEec-cchhhhhhhcccccccccceEEEeecCCCCcccc--cc--ccc-cCccceEeeccCCCcceEEec
Q 035887 662 ITLEHLNVLSVTLK-SFGALQRLLSCQQLHSSTRALELRRCEDSKSWNI--LS--IAD-LKYLNKLDFAYCTSLEVLRVN 735 (886)
Q Consensus 662 ~~L~~L~~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~--l~~-l~~L~~L~i~~~~~l~~l~~~ 735 (886)
..+..|..+..... ................+|+.|.+.+|...+.... .+ ... ++++..+.+.+|..++ .+.
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r--~l~ 764 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR--DLT 764 (889)
T ss_pred hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc--ccc
Confidence 44444432221111 0022223333344557899999999875432110 01 111 4467777777787777 444
Q ss_pred cccccCccCCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhh-ccccccCCCCCCCCCCcccEEeccc
Q 035887 736 YAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEI-ISAWKLGEVPGLNPFAKLQYLRLQV 813 (886)
Q Consensus 736 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i-~~~~~~~~~~~~~~fp~L~~L~L~~ 813 (886)
|.. .+++|+.|.+..|+....+. ....+..++.+.+..+ ..... .. ...+.||++..+.+.+
T Consensus 765 ~~~--------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~-------~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 765 WLL--------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRML-------CSLGGLPQLYWLPLSF 828 (889)
T ss_pred hhh--------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceee-------ecCCCCceeEecccCc
Confidence 443 58999999999999888764 4556666665444433 22222 11 3566788888887777
Q ss_pred cccccccccCc----CCCCCccEEeeccC-CCCCCCCCC
Q 035887 814 LTKLKIIFRNA----LPFPNLLELFVSEC-PNLKKLPLD 847 (886)
Q Consensus 814 ~~~L~~i~~~~----~~~p~L~~L~i~~C-~~L~~lp~~ 847 (886)
+.|+.|..+. ..+|.+.++.+.+| +++..+|..
T Consensus 829 -~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 829 -LKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred -cchhheehhcCcccccCccccccceeccccceeecCCc
Confidence 3477776655 66899999999997 999999986
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=7.6e-13 Score=153.82 Aligned_cols=254 Identities=19% Similarity=0.170 Sum_probs=180.0
Q ss_pred hhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCC
Q 035887 512 RRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETS 591 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~ 591 (886)
-..|++..+.+..+|... .++|+.|++.+|.++.+|.. +++|++|++++| .++.+|.. ..+|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCCc
Confidence 345677777777776532 35899999999988888753 578999999999 88888853 4688999999999
Q ss_pred ccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEE
Q 035887 592 IKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLS 671 (886)
Q Consensus 592 i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (886)
++.+|.. +.+|+.|++++|. +..+|.. +++|+.|++++|.... +|. . ..+|..|.
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~-Lp~----------l------p~~L~~L~ 328 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS-LPA----------L------PSELCKLW 328 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCc-ccccccc----ccccceeECCCCcccc-CCC----------C------cccccccc
Confidence 9988863 3678889999986 6788862 4789999999886543 211 0 12344555
Q ss_pred EEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCc
Q 035887 672 VTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSL 751 (886)
Q Consensus 672 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L 751 (886)
+..+.+..++. +..+|+.|+|+++. +..+|. + ..+|+.|+++++ .+..+ |. .+++|
T Consensus 329 Ls~N~L~~LP~------lp~~Lq~LdLS~N~-Ls~LP~--l--p~~L~~L~Ls~N-~L~~L----------P~--l~~~L 384 (788)
T PRK15387 329 AYNNQLTSLPT------LPSGLQELSVSDNQ-LASLPT--L--PSELYKLWAYNN-RLTSL----------PA--LPSGL 384 (788)
T ss_pred cccCccccccc------cccccceEecCCCc-cCCCCC--C--Ccccceehhhcc-ccccC----------cc--ccccc
Confidence 55555444332 23578999998864 444432 1 256777777653 34322 11 24689
Q ss_pred cEEEeccCCccccCcccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCcc
Q 035887 752 QRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLL 831 (886)
Q Consensus 752 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~ 831 (886)
+.|+|++| .+..+|.+ .++|+.|++++| .+..++. .+.+|+.|++++ ..++.+|.....+++|+
T Consensus 385 ~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP~-----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 385 KELIVSGN-RLTSLPVL--PSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYR-NQLTRLPESLIHLSSET 448 (788)
T ss_pred ceEEecCC-cccCCCCc--ccCCCEEEccCC-cCCCCCc-----------chhhhhhhhhcc-CcccccChHHhhccCCC
Confidence 99999998 45566643 478999999998 4665532 245789999988 66888888777899999
Q ss_pred EEeeccCC
Q 035887 832 ELFVSECP 839 (886)
Q Consensus 832 ~L~i~~C~ 839 (886)
.|++++++
T Consensus 449 ~LdLs~N~ 456 (788)
T PRK15387 449 TVNLEGNP 456 (788)
T ss_pred eEECCCCC
Confidence 99999985
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=2.6e-14 Score=128.95 Aligned_cols=160 Identities=22% Similarity=0.392 Sum_probs=130.1
Q ss_pred CCcccccccchhhhhccccceEEcC-CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCcc
Q 035887 502 KPPEVRKWEDRRKISLMRNKIVILS-KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLV 580 (886)
Q Consensus 502 ~~~~~~~~~~~r~l~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~ 580 (886)
+.+.....+++.+|.++.|.+..+| ....+.+|++|.+++|.++.+|.. ++++++||.|+++-| .+..+|..||.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCc
Confidence 3455566778889999999887754 447888999999999999888887 788999999999988 7888999999999
Q ss_pred CCCEEeccCCCcc--ccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchH
Q 035887 581 SLQYLNLSETSIK--ELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILV 658 (886)
Q Consensus 581 ~L~~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 658 (886)
-|+.|||.+|++. .+|..+-.|+.|+-|++++|. .+.+|.. ++++++||.|.+.+|.... ..
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~--------------lp 166 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLS--------------LP 166 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhh--------------Cc
Confidence 9999999998776 788888888999999999886 5888887 8999999999998776543 55
Q ss_pred HHhcCCcCCceEEEEeccchh
Q 035887 659 EELITLEHLNVLSVTLKSFGA 679 (886)
Q Consensus 659 ~~l~~L~~L~~L~~~~~~~~~ 679 (886)
.+++.|+.|+.|++..+....
T Consensus 167 keig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHHHHHhcccceeee
Confidence 667777777777777555433
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-13 Score=153.87 Aligned_cols=296 Identities=21% Similarity=0.275 Sum_probs=149.5
Q ss_pred hhhhhccccceEEcC--CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccC
Q 035887 512 RRKISLMRNKIVILS--KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSE 589 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 589 (886)
+..|++..|.+-..| ...++-+|.+|+++.|.+..+|.. +..+.+|+.|+++.| .+...|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchh-hHhhCchhhhhhhcchhheecc
Confidence 455555555443322 223444577777777766666654 556667777777777 6777777777777777777777
Q ss_pred CCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCccccccccc------ccCCccchHHHhcC
Q 035887 590 TSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSV------QFGGSEILVEELIT 663 (886)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~~~l~~ 663 (886)
|.+..+|.++..+.+|++|++++|. ...+|.- +..++.+..+..++|.....++.... ........+.++.+
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh
Confidence 7777777777777777777777775 4556653 55666666666665521110000000 00000111112222
Q ss_pred CcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCcc
Q 035887 664 LEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTR 743 (886)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~ 743 (886)
+++ .+++..+... .++++.+..++.+. .....|..+.+++ ++++.+..+.+......
T Consensus 179 l~~--~ldLr~N~~~----------------~~dls~~~~l~~l~----c~rn~ls~l~~~g-~~l~~L~a~~n~l~~~~ 235 (1081)
T KOG0618|consen 179 LTH--QLDLRYNEME----------------VLDLSNLANLEVLH----CERNQLSELEISG-PSLTALYADHNPLTTLD 235 (1081)
T ss_pred hhe--eeecccchhh----------------hhhhhhccchhhhh----hhhcccceEEecC-cchheeeeccCcceeec
Confidence 222 1222211111 11111111111110 0112233333333 23333333332222112
Q ss_pred CCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccccc
Q 035887 744 EPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFR 822 (886)
Q Consensus 744 ~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~ 822 (886)
....+.+|++++++.+ .+..+| |++.+++|+.|.+.++. +..++. .+....+|+.|.+.. ..++.++.
T Consensus 236 ~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~--------ri~~~~~L~~l~~~~-nel~yip~ 304 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNR-LVALPL--------RISRITSLVSLSAAY-NELEYIPP 304 (1081)
T ss_pred cccccccceeeecchh-hhhcchHHHHhcccceEecccchh-HHhhHH--------HHhhhhhHHHHHhhh-hhhhhCCC
Confidence 2335789999999987 444554 89999999999998774 444443 222334555555544 23555554
Q ss_pred CcCCCCCccEEeeccCCCCCCCCC
Q 035887 823 NALPFPNLLELFVSECPNLKKLPL 846 (886)
Q Consensus 823 ~~~~~p~L~~L~i~~C~~L~~lp~ 846 (886)
....+.+|++|++.. .+|..+|.
T Consensus 305 ~le~~~sL~tLdL~~-N~L~~lp~ 327 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQS-NNLPSLPD 327 (1081)
T ss_pred cccccceeeeeeehh-ccccccch
Confidence 444455555555554 24444444
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=1.3e-10 Score=144.99 Aligned_cols=287 Identities=16% Similarity=0.174 Sum_probs=179.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHH
Q 035887 152 LEPTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGER 230 (886)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~ 230 (886)
..+.+|-|++-.+++-+ ....+++.|.|++|.||||++..+.... . .++|+++.. +.+...+...++..
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHH
Confidence 34567888765554432 1367899999999999999999988543 2 599999864 44666666777776
Q ss_pred hCCCC---------------CCCHHHHHHHHHHHhc--cCcEEEEEccccch--hh-hhhccCCCCCCCCCCcEEEEEcC
Q 035887 231 IGFLE---------------NRSLEEKASGIFKILS--KKKFLLLLDDIWER--VD-LAKLGVPFPAISKNASKIVFTTR 290 (886)
Q Consensus 231 l~~~~---------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~-~~~l~~~~~~~~~~gs~iiiTtR 290 (886)
+.... ..+.......+...+. +.+++|||||+... .. .+.+...+. ....+.++|||||
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR 160 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSR 160 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeC
Confidence 63111 0122233333333333 68999999999642 12 222322233 3445678889999
Q ss_pred Chhh---hhccCccceEEcc----CCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCC
Q 035887 291 LENV---CGLMETQKKFKVE----CLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKT 363 (886)
Q Consensus 291 ~~~v---~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~ 363 (886)
...- ...........+. +|+.+|+.++|....+..- -.+....|.+.|+|.|+++..++..+.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 8421 1111122345555 9999999999987765321 2345788999999999999988877754321
Q ss_pred HHHHHHHHHHHhhcccCCCCC-hhhhhhhHHh-hhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCc
Q 035887 364 PEEWNYAIEMLRRSASEFPGM-EKEVYPLLKF-SYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGI 441 (886)
Q Consensus 364 ~~~w~~~~~~l~~~~~~~~~~-~~~i~~~l~~-sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 441 (886)
.. ......+ .+. ...+...+.- .++.||+ ..+..++..|+++ .++.+ +.. .+..
T Consensus 235 ~~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~~----- 290 (903)
T PRK04841 235 SL--HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVTG----- 290 (903)
T ss_pred ch--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHcC-----
Confidence 00 0001111 110 1235444433 3789999 8999999999997 33322 222 1111
Q ss_pred chhhhhhhHHHHHHHHhccccc-C--Cc-eEEeehhHHHHHHHHH
Q 035887 442 NGVHNKGYYIIGVLVQACLLEV-G--SD-YVKMHDVIRDMALWIA 482 (886)
Q Consensus 442 ~~~~~~~~~~~~~L~~~sll~~-~--~~-~~~mHdlv~d~a~~i~ 482 (886)
.+.+...+++|.+++++.. . +. .|+.|++++++.+.-.
T Consensus 291 ---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2334677999999999753 2 23 7889999999988764
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=3.6e-10 Score=126.49 Aligned_cols=290 Identities=15% Similarity=0.105 Sum_probs=172.7
Q ss_pred CCccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
++.++||++++++|...+.. .....+.|+|++|+|||++++.++++. ......-.++++++....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46789999999999998854 345668899999999999999999987 3222234567777777778889999999
Q ss_pred HHhCCCC----CCCHHHHHHHHHHHhc--cCcEEEEEccccchh------hhhhccCCCCCCCCCCcE--EEEEcCChhh
Q 035887 229 ERIGFLE----NRSLEEKASGIFKILS--KKKFLLLLDDIWERV------DLAKLGVPFPAISKNASK--IVFTTRLENV 294 (886)
Q Consensus 229 ~~l~~~~----~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~~gs~--iiiTtR~~~v 294 (886)
+++.... ..+.++....+.+.+. +++.+||+|+++... .+..+..... ...+++ +|.++....+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~--~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE--EYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh--ccCCCeEEEEEEECCcch
Confidence 9997521 3456777777777776 356899999997532 2333322221 112333 5556555443
Q ss_pred hhccC-------ccceEEccCCChHHHHHHHHHHhcCC---cCCCCCChHHHHHHHHHHcCCchhHHHHHHHHh--c--C
Q 035887 295 CGLME-------TQKKFKVECLGDNEAWELFLQKVGEE---TLGSHPDIPELAKTVAKECCGLPLALITTGRAM--S--G 360 (886)
Q Consensus 295 ~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l--~--~ 360 (886)
..... ....+.+++++.++..+++...+... ..-.+..++.+++......|..+.|+..+-.+. + .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22211 12468999999999999999876321 111112223333333333455777776654322 1 1
Q ss_pred -C--CCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhc-CCCC-CcccCHHHHHHHH--HhcC
Q 035887 361 -K--KTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCS-LFPE-DYHIGKIELIECW--IGEG 433 (886)
Q Consensus 361 -~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp~-~~~i~~~~li~~w--~a~g 433 (886)
. -+.+..+.+.+.+.. ....-.+..||. +.|..+..++ .... ...+....+.... +++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 245555555544311 223445788998 5554443333 2221 1345555554332 2211
Q ss_pred CcCCccCcchhhhhhhHHHHHHHHhccccc
Q 035887 434 FLNGYEGINGVHNKGYYIIGVLVQACLLEV 463 (886)
Q Consensus 434 ~i~~~~~~~~~~~~~~~~~~~L~~~sll~~ 463 (886)
+ .. .+-.......|+++|...+++..
T Consensus 332 ~-~~---~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 L-GY---EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred c-CC---CcCcHHHHHHHHHHHHhcCCeEE
Confidence 1 00 01123456678999999999975
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=3.7e-12 Score=149.29 Aligned_cols=242 Identities=19% Similarity=0.225 Sum_probs=124.9
Q ss_pred hhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccc
Q 035887 515 ISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKE 594 (886)
Q Consensus 515 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~ 594 (886)
|.+.++.+..+|.. -.++|+.|++++|.++.+|..++ .+|++|++++| .++.+|..+. .+|+.|+|++|.+.+
T Consensus 183 L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 183 LRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITE 255 (754)
T ss_pred EEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCc
Confidence 44444444444432 12456677777776666665533 36677777766 5666665443 356777777777767
Q ss_pred cchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEe
Q 035887 595 LPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTL 674 (886)
Q Consensus 595 LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~ 674 (886)
+|..+. .+|+.|++++|+ +..+|.. + .++|++|++++|.... +|.. +. ++|+.|++..
T Consensus 256 LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~-------------lp--~sL~~L~Ls~ 313 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSIRT-LPAH-------------LP--SGITHLNVQS 313 (754)
T ss_pred CChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCcccc-Cccc-------------ch--hhHHHHHhcC
Confidence 666554 466777776654 5566654 2 2466777776664332 2110 00 1233333333
Q ss_pred ccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEE
Q 035887 675 KSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRV 754 (886)
Q Consensus 675 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L 754 (886)
+.+..++. ...++|+.|.+++|. +..++. .+ .++|+.|+++++. ++.++. ..+++|+.|
T Consensus 314 N~Lt~LP~-----~l~~sL~~L~Ls~N~-Lt~LP~-~l--~~sL~~L~Ls~N~-L~~LP~-----------~lp~~L~~L 372 (754)
T PRK15370 314 NSLTALPE-----TLPPGLKTLEAGENA-LTSLPA-SL--PPELQVLDVSKNQ-ITVLPE-----------TLPPTITTL 372 (754)
T ss_pred CccccCCc-----cccccceeccccCCc-cccCCh-hh--cCcccEEECCCCC-CCcCCh-----------hhcCCcCEE
Confidence 33322211 112466667766653 333332 22 2567777777652 332211 123567777
Q ss_pred EeccCCccccCcc-cccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccc
Q 035887 755 TIACCSRLREVTW-LVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVL 814 (886)
Q Consensus 755 ~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~ 814 (886)
+|++|. +..+|. +. ++|+.|++++| .+..++..- ......+|++..|.|.+.
T Consensus 373 dLs~N~-Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl----~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 373 DVSRNA-LTNLPENLP--AALQIMQASRN-NLVRLPESL----PHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred ECCCCc-CCCCCHhHH--HHHHHHhhccC-CcccCchhH----HHHhhcCCCccEEEeeCC
Confidence 777773 444442 22 35777777776 344443200 012233466777777663
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=3.6e-12 Score=149.36 Aligned_cols=223 Identities=21% Similarity=0.257 Sum_probs=148.8
Q ss_pred cchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccC
Q 035887 510 EDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSE 589 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 589 (886)
..++.|++.+|.+..+|.. .+++|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 4688888888888777653 24688888888888888876543 46888889888 7788887664 4788899988
Q ss_pred CCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 590 TSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
|+++.+|..+. .+|++|++++|. +..+|.. + .++|++|++++|.... +|.. + .++|+.
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~-LP~~-------------l--~~sL~~ 329 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTA-LPET-------------L--PPGLKT 329 (754)
T ss_pred CccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCcccc-CCcc-------------c--ccccee
Confidence 88888887664 578888888885 6777764 2 2468888888776542 2110 1 135666
Q ss_pred EEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCC
Q 035887 670 LSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFN 749 (886)
Q Consensus 670 L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (886)
|.+..+.+..++. .+.++|+.|++++|. +..++. .+ .++|+.|++++| .+..++.. .+.
T Consensus 330 L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~-L~~LP~-~l--p~~L~~LdLs~N-~Lt~LP~~-----------l~~ 388 (754)
T PRK15370 330 LEAGENALTSLPA-----SLPPELQVLDVSKNQ-ITVLPE-TL--PPTITTLDVSRN-ALTNLPEN-----------LPA 388 (754)
T ss_pred ccccCCccccCCh-----hhcCcccEEECCCCC-CCcCCh-hh--cCCcCEEECCCC-cCCCCCHh-----------HHH
Confidence 6666555443332 123578888888874 334432 22 257888888876 34433221 234
Q ss_pred CccEEEeccCCccccCc-c----cccCCCCcEEEEecCc
Q 035887 750 SLQRVTIACCSRLREVT-W----LVFAPNLKIVHIESCY 783 (886)
Q Consensus 750 ~L~~L~L~~c~~l~~l~-~----l~~l~~L~~L~L~~~~ 783 (886)
+|+.|++++|. +..+| . .+.+|++..|+|.+++
T Consensus 389 sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 68888888874 44544 2 3345888888888774
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1.2e-13 Score=124.64 Aligned_cols=139 Identities=25% Similarity=0.397 Sum_probs=113.4
Q ss_pred EEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhcc
Q 035887 523 VILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKAL 602 (886)
Q Consensus 523 ~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L 602 (886)
..++...++++...|.++.|.+..+|+. +..+.+|.+|++++| .++.+|.+++.|++|+.|++.-|++..+|.++|.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 4456667888899999999999888887 778999999999999 89999999999999999999999999999999999
Q ss_pred CCCcEeecccccccc-ccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccch
Q 035887 603 TKLKCLNLEYTRYLQ-KIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFG 678 (886)
Q Consensus 603 ~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~ 678 (886)
+-|+.||+.+|+.-+ .+|.+ +-.++.|+.|++.+|..- ....+.++|++|+.|++.-++.-
T Consensus 102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe--------------~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE--------------ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc--------------cCChhhhhhcceeEEeeccCchh
Confidence 999999999886433 36665 667788999998877542 24556778888888887755543
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=2.6e-09 Score=112.80 Aligned_cols=181 Identities=16% Similarity=0.175 Sum_probs=115.6
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHh-
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-NRSLEEKASGIFKIL- 250 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l- 250 (886)
...+++.|+|++|+||||+++.+++.. .. ..+ ..+|+ +....+..+++..|+..++.+. ..+.......+...+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999987 21 111 22333 3344577889999999988754 223333334444332
Q ss_pred ----ccCcEEEEEccccch--hhhhhccCCCCC--CCCCCcEEEEEcCChhhhhcc----------CccceEEccCCChH
Q 035887 251 ----SKKKFLLLLDDIWER--VDLAKLGVPFPA--ISKNASKIVFTTRLENVCGLM----------ETQKKFKVECLGDN 312 (886)
Q Consensus 251 ----~~k~~LlVlDdv~~~--~~~~~l~~~~~~--~~~~gs~iiiTtR~~~v~~~~----------~~~~~~~l~~L~~~ 312 (886)
.+++.++|+||++.. ..++.+...... .......|++|.... ....+ .....+.+++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 568899999999863 344544322110 122223445555432 21111 11346789999999
Q ss_pred HHHHHHHHHhcCCcCCC-CCChHHHHHHHHHHcCCchhHHHHHHHHh
Q 035887 313 EAWELFLQKVGEETLGS-HPDIPELAKTVAKECCGLPLALITTGRAM 358 (886)
Q Consensus 313 e~~~lf~~~~~~~~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~~l 358 (886)
|..+++...+....... ..-..+..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999988764322111 12235788999999999999998888765
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=8.3e-09 Score=114.24 Aligned_cols=294 Identities=14% Similarity=0.086 Sum_probs=172.0
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC---CeEEEEEeCCCCCHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF---EVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~ 226 (886)
+.++||++++++|..+|.. .....+.|+|++|+|||++++.+++......... -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999999874 3456789999999999999999998752111111 24678888777788899999
Q ss_pred HHHHhC---CCC---CCCHHHHHHHHHHHhc--cCcEEEEEccccchh-----hhhhccCC--CCCCCCCCcEEEEEcCC
Q 035887 227 IGERIG---FLE---NRSLEEKASGIFKILS--KKKFLLLLDDIWERV-----DLAKLGVP--FPAISKNASKIVFTTRL 291 (886)
Q Consensus 227 i~~~l~---~~~---~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-----~~~~l~~~--~~~~~~~gs~iiiTtR~ 291 (886)
|++++. ... ..+..+....+.+.+. +++++||||+++... .+..+... ........-.+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999983 221 2344556666666664 567899999998541 12222211 01011122344555544
Q ss_pred hhhhhccC-------ccceEEccCCChHHHHHHHHHHhcC--CcCCCCCChHHHHHHHHHHcCCchhHHHH-HHHHh---
Q 035887 292 ENVCGLME-------TQKKFKVECLGDNEAWELFLQKVGE--ETLGSHPDIPELAKTVAKECCGLPLALIT-TGRAM--- 358 (886)
Q Consensus 292 ~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPlai~~-~~~~l--- 358 (886)
......+. ....+.+++++.+|..+++..++.. ......++..+....++..+.|.|..+.. +-.+.
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33211111 1246899999999999999988742 11112233334555667777788855432 22211
Q ss_pred -cC---CCCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCC--CCCcccCHHHHHHHHHhc
Q 035887 359 -SG---KKTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLF--PEDYHIGKIELIECWIGE 432 (886)
Q Consensus 359 -~~---~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~w~a~ 432 (886)
.. .-+.+..+.+.+.+.. ....-++..||. +.+..+..++.. ..+..+....+...+-..
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 11 1244444444443311 223345678887 666444443311 134456666666533211
Q ss_pred -CCcCCccCcchhhhhhhHHHHHHHHhcccccC
Q 035887 433 -GFLNGYEGINGVHNKGYYIIGVLVQACLLEVG 464 (886)
Q Consensus 433 -g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 464 (886)
..+.. .+........++..|...|++...
T Consensus 321 ~~~~~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11111 123346677889999999998753
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.2e-10 Score=120.40 Aligned_cols=193 Identities=19% Similarity=0.210 Sum_probs=103.7
Q ss_pred cccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHH---------
Q 035887 156 IVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEK--------- 226 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~--------- 226 (886)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. . ..-..++|+...+.........-
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K--EKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T----EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h--hcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999988778999999999999999999999986 2 21124455544444322221111
Q ss_pred ----HHHHhCCCC--------CCCHHHHHHHHHHHhc--cCcEEEEEccccchh-h-------hhhccCCCCC-CCCCCc
Q 035887 227 ----IGERIGFLE--------NRSLEEKASGIFKILS--KKKFLLLLDDIWERV-D-------LAKLGVPFPA-ISKNAS 283 (886)
Q Consensus 227 ----i~~~l~~~~--------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~-------~~~l~~~~~~-~~~~gs 283 (886)
+...+.... ..........+.+.+. +++++||+||+.... . ...+...+.. .....-
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111111110 1122223333334443 356999999997544 1 1122222220 122333
Q ss_pred EEEEEcCChhhhhc--------cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 284 KIVFTTRLENVCGL--------METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 284 ~iiiTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
.+|+++.+...... .+....+.+++|+.+++++++...+... ... +.-.+..++|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44555554444322 2334469999999999999999976443 111 22355669999999999998864
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=5.7e-12 Score=128.89 Aligned_cols=106 Identities=27% Similarity=0.390 Sum_probs=75.6
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc-cCccccCccCCCEEeccC-CCccccchh-hhccCCCcEee
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ-LPSGVSKLVSLQYLNLSE-TSIKELPHE-LKALTKLKCLN 609 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~~L~~L~~L~L~~-~~i~~LP~~-i~~L~~L~~L~ 609 (886)
.-..+.|..|.++.+|+..|+.+++||.||||+| .|+. -|..|..|..|-.|-+-+ |+|+.+|+. +++|..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4566777777777888777888888888888887 5554 366777777776666655 678888776 77777777777
Q ss_pred ccccccccccccccccCCCCCCEEEeccCCC
Q 035887 610 LEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 610 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
+.-|+ +..++.+++..|++|..|.++++..
T Consensus 147 lNan~-i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 147 LNANH-INCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred cChhh-hcchhHHHHHHhhhcchhcccchhh
Confidence 76664 5666666677777777777776543
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=5.3e-09 Score=113.23 Aligned_cols=269 Identities=13% Similarity=0.072 Sum_probs=146.5
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
..|+|+++.++.+..++.. .....+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 4689999999998877753 345678899999999999999999987 2 222 1222211 11122222333
Q ss_pred HHhCCCC---CCCH----HHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhccC--
Q 035887 229 ERIGFLE---NRSL----EEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGLME-- 299 (886)
Q Consensus 229 ~~l~~~~---~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~-- 299 (886)
..+.... -++. ....+.+...+.+.+..+|+|+..+..... ..+ .+.+-|..||+...+.....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l----~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL----PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee---ecC----CCceEEeecCCcccCCHHHHHh
Confidence 3332111 0000 111222334444445555555443322111 011 12345566776544432211
Q ss_pred ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 035887 300 TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRSAS 379 (886)
Q Consensus 300 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 379 (886)
-...+++++++.++..+++.+.+....... -.+....|++.|+|.|-.+..+...+. .|... ... .
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~----~~~-~ 236 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQV----KGD-G 236 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHH----cCC-C
Confidence 134689999999999999999886543222 245689999999999976654443321 12110 000 0
Q ss_pred CCC-CChhhhhhhHHhhhcCCCcchHHHHHh-hhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhhHHHH-HHH
Q 035887 380 EFP-GMEKEVYPLLKFSYDSLSSDVLRFCLL-YCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGYYIIG-VLV 456 (886)
Q Consensus 380 ~~~-~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~ 456 (886)
... ..-......+...|..|++ ..+..+. ....|+.+ .+..+.+.... . .....++..++ .|+
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g------~~~~~~~~~~e~~Li 302 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------G------EERDTIEDVYEPYLI 302 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------C------CCcchHHHHhhHHHH
Confidence 000 0001334445666778887 4555553 66667655 46555553332 1 12234444556 789
Q ss_pred HhcccccC
Q 035887 457 QACLLEVG 464 (886)
Q Consensus 457 ~~sll~~~ 464 (886)
+.+|++..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99998754
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=6.2e-08 Score=104.24 Aligned_cols=270 Identities=14% Similarity=0.090 Sum_probs=148.5
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
..|+|+++.++++..++.. .....+.++|++|+|||+||+.+.+.. . ..+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchh-HHHHH
Confidence 3689999999999888863 345678899999999999999999887 2 222 1222221111122 22222
Q ss_pred HHhCCCC---CCC----HHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhcc-C-
Q 035887 229 ERIGFLE---NRS----LEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGLM-E- 299 (886)
Q Consensus 229 ~~l~~~~---~~~----~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~-~- 299 (886)
..++... -++ .....+.+...+.+.+..+|+|+..+...+.. .+ .+.+-|..||+...+.... .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~----~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL----PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---cC----CCeEEEEecCCccccCHHHHhh
Confidence 3332211 000 01123344555555556666665544333321 11 1245566677765443221 1
Q ss_pred ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 035887 300 TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRSAS 379 (886)
Q Consensus 300 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 379 (886)
-...+++++++.+|..+++.+.+...... --.+....|++.|+|.|-.+..++..+ |..+. ......-
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCc
Confidence 13467999999999999999888643321 224567889999999997765554432 11100 0000000
Q ss_pred CCCCChhhhhhhHHhhhcCCCcchHHHHHh-hhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhhHHHH-HHHH
Q 035887 380 EFPGMEKEVYPLLKFSYDSLSSDVLRFCLL-YCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGYYIIG-VLVQ 457 (886)
Q Consensus 380 ~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~ 457 (886)
. .+.-......+...|..++. +.+..+. ..+.++.+ .+..+.+.... ......+...++ .|++
T Consensus 218 t-~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l------------g~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 218 N-RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL------------GEDADTIEDVYEPYLLQ 282 (305)
T ss_pred C-HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh------------CCCcchHHHhhhHHHHH
Confidence 0 00001223335567788887 5555554 55666533 45544443322 122345566677 6999
Q ss_pred hcccccC
Q 035887 458 ACLLEVG 464 (886)
Q Consensus 458 ~sll~~~ 464 (886)
++|++..
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999765
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=9.6e-11 Score=127.38 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=17.3
Q ss_pred CCCCccEEEeccCCcccc--Ccccc-----cCCCCcEEEEecC
Q 035887 747 GFNSLQRVTIACCSRLRE--VTWLV-----FAPNLKIVHIESC 782 (886)
Q Consensus 747 ~~~~L~~L~L~~c~~l~~--l~~l~-----~l~~L~~L~L~~~ 782 (886)
.+++|+.|++++|. +.+ +..+. ..+.|+.|++++|
T Consensus 219 ~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 219 SLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred ccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC
Confidence 34566666666653 221 11111 1356666666666
No 31
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=2.8e-09 Score=103.51 Aligned_cols=142 Identities=17% Similarity=0.261 Sum_probs=90.8
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNN----FEVVIWVVVSKDMQLE---SVQEKIGERIGFLENRSLEEKASGIFK 248 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~l~~ 248 (886)
+++.|+|.+|+||||+++.++.+. ..... +...+|+......... .+...|..+..... ..... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-APIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-hhhHH---HHHH
Confidence 578999999999999999999887 32222 4567777765543322 34444444443221 11111 2222
Q ss_pred H-hccCcEEEEEccccchhh---------hhh-ccCCCCCCCCCCcEEEEEcCChhh---hhccCccceEEccCCChHHH
Q 035887 249 I-LSKKKFLLLLDDIWERVD---------LAK-LGVPFPAISKNASKIVFTTRLENV---CGLMETQKKFKVECLGDNEA 314 (886)
Q Consensus 249 ~-l~~k~~LlVlDdv~~~~~---------~~~-l~~~~~~~~~~gs~iiiTtR~~~v---~~~~~~~~~~~l~~L~~~e~ 314 (886)
. -+.++++||+|++++... +.. +...+......+.++|||+|.... .........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2 246899999999975321 112 222222123468999999998766 33344556899999999999
Q ss_pred HHHHHHHh
Q 035887 315 WELFLQKV 322 (886)
Q Consensus 315 ~~lf~~~~ 322 (886)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998775
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=6.9e-10 Score=106.03 Aligned_cols=118 Identities=28% Similarity=0.378 Sum_probs=39.0
Q ss_pred cceEEcCCCCCCCcceeeeecCccccccChhhhc-CCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchh
Q 035887 520 NKIVILSKPPACPRLLTLFLGINRLDTISSDFFD-FMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHE 598 (886)
Q Consensus 520 ~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~-~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~ 598 (886)
+.++..+...++.+++.|++.+|.+..+.. +. .+.+|++|+|++| .++.++ .+..+.+|++|++++|.|+.++..
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 344455555667778888888887765532 33 4678888888888 787776 577788888888888888888765
Q ss_pred h-hccCCCcEeecccccccccccc-ccccCCCCCCEEEeccCCCcc
Q 035887 599 L-KALTKLKCLNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 599 i-~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~ 642 (886)
+ ..+++|++|++++|+ +..+.. ..+..+++|++|++.+|+...
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc
Confidence 5 468888888888875 444322 125677888888888887654
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.95 E-value=1.6e-08 Score=121.44 Aligned_cols=303 Identities=12% Similarity=0.178 Sum_probs=178.8
Q ss_pred cccchhhHHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC---CHHHHHHHHHH
Q 035887 156 IVGLDSTFDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM---QLESVQEKIGE 229 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~---~~~~~~~~i~~ 229 (886)
++||+.+++.|...+.+ +...++.+.|..|||||++++.|.....+.+..|-...+-...... ...+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998875 5677999999999999999999999873332333222222222221 23344455555
Q ss_pred HhCCCC---------------------------------C----------CCHHHH-----HHHHHHHh-ccCcEEEEEc
Q 035887 230 RIGFLE---------------------------------N----------RSLEEK-----ASGIFKIL-SKKKFLLLLD 260 (886)
Q Consensus 230 ~l~~~~---------------------------------~----------~~~~~~-----~~~l~~~l-~~k~~LlVlD 260 (886)
++.... . ...... ...+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 441111 0 000111 11122222 3469999999
Q ss_pred cc-c-chhhhhhccCCCCCC---CCCCcEEEEEc--CCh--hhhhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCC
Q 035887 261 DI-W-ERVDLAKLGVPFPAI---SKNASKIVFTT--RLE--NVCGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHP 331 (886)
Q Consensus 261 dv-~-~~~~~~~l~~~~~~~---~~~gs~iiiTt--R~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 331 (886)
|+ | |...++-+....... .-.-..|..+. +.. .+.....+...|.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 4 333222221111100 00012233322 222 1222223446899999999999999999887533 2
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHhcCC------CCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHH
Q 035887 332 DIPELAKTVAKECCGLPLALITTGRAMSGK------KTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLR 405 (886)
Q Consensus 332 ~~~~~~~~i~~~c~glPlai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 405 (886)
...+..+.|+++..|+|+.+..+-..+... .+...|..-...+. ..+.. +++...+..-.+.||+ ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----Cchhh-HHHHHHHHHHHhcCCH-HHH
Confidence 335678999999999999999988888763 34455554322221 11122 2466678889999999 899
Q ss_pred HHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhhHHHHHHHHhcccccC-----C--c-eE---EeehhH
Q 035887 406 FCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGYYIIGVLVQACLLEVG-----S--D-YV---KMHDVI 474 (886)
Q Consensus 406 ~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~-----~--~-~~---~mHdlv 474 (886)
..+-..|++-. .|+.+.|-..|- .....++....+.|....++-.+ + . .. .-||.+
T Consensus 312 ~Vl~~AA~iG~--~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGN--RFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCc--cCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 99999999964 455666655542 12234455555555555444321 1 1 22 578888
Q ss_pred HHHHHHH
Q 035887 475 RDMALWI 481 (886)
Q Consensus 475 ~d~a~~i 481 (886)
++.|-..
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8877643
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.93 E-value=1e-07 Score=108.21 Aligned_cols=284 Identities=18% Similarity=0.159 Sum_probs=183.9
Q ss_pred ccccchhhHHHHHHHHhcC-CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhC
Q 035887 155 TIVGLDSTFDKVWRCLIQE-QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIG 232 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~ 232 (886)
..|-|. ++++.|... +.+.+.|..|+|.||||++-+..... ..-..+.|.+.... .+...+...++..++
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 445554 456666654 78999999999999999999998733 44567999998764 578888888888886
Q ss_pred CC--C-------------CCCHHHHHHHHHHHhc--cCcEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCCh
Q 035887 233 FL--E-------------NRSLEEKASGIFKILS--KKKFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRLE 292 (886)
Q Consensus 233 ~~--~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~~ 292 (886)
.. . ..+...+.+.+..-+. .++..+||||..- ..--..+...+. ....+-.+|||||+.
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~-~~P~~l~lvv~SR~r 170 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK-HAPENLTLVVTSRSR 170 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH-hCCCCeEEEEEeccC
Confidence 22 1 2233344444555444 3689999999852 221222222222 445677899999986
Q ss_pred hhhhc--cC-ccceEE----ccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHH
Q 035887 293 NVCGL--ME-TQKKFK----VECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPE 365 (886)
Q Consensus 293 ~v~~~--~~-~~~~~~----l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~ 365 (886)
.-... +. .+..++ .=.++.+|+-++|....+..- -+...+.+.+..+|-+-|+..++=.++.+.+.+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 53211 11 112222 235789999999988764322 244578899999999999988887777433332
Q ss_pred HHHHHHHHHhhcccCCCCChhhhhhhH-HhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchh
Q 035887 366 EWNYAIEMLRRSASEFPGMEKEVYPLL-KFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGV 444 (886)
Q Consensus 366 ~w~~~~~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 444 (886)
.--.. +++..+.+..-| .--++.||+ .++..++-||+++.= -..|+..- ..
T Consensus 245 q~~~~----------LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~L-------------tg 296 (894)
T COG2909 245 QSLRG----------LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNAL-------------TG 296 (894)
T ss_pred HHhhh----------ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHH-------------hc
Confidence 21111 111112233322 234789999 899999999998532 12333322 23
Q ss_pred hhhhhHHHHHHHHhcccccC---Cc-eEEeehhHHHHHHHH
Q 035887 445 HNKGYYIIGVLVQACLLEVG---SD-YVKMHDVIRDMALWI 481 (886)
Q Consensus 445 ~~~~~~~~~~L~~~sll~~~---~~-~~~mHdlv~d~a~~i 481 (886)
++.+...+++|.+++|+-.. .+ .|+.|.+..|+.+.=
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 45667789999999988643 23 999999999997743
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.91 E-value=1e-07 Score=99.33 Aligned_cols=218 Identities=17% Similarity=0.183 Sum_probs=126.0
Q ss_pred CCccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHh
Q 035887 153 EPTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERI 231 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l 231 (886)
..+++|.+.. |.+++..+.+.-.-+||++|+||||||+.+.... ...|. .+|-.. ++.++ +
T Consensus 29 Q~HLlg~~~~---lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdl-r------ 90 (436)
T COG2256 29 QEHLLGEGKP---LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDL-R------ 90 (436)
T ss_pred hHhhhCCCch---HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHH-H------
Confidence 3445555444 4455667788888899999999999999999876 44553 222222 22222 2
Q ss_pred CCCCCCCHHHHHHHH-HHHhccCcEEEEEcccc--chhhhhhccCCCCCCCCCCcEEEE--EcCChhh---hhccCccce
Q 035887 232 GFLENRSLEEKASGI-FKILSKKKFLLLLDDIW--ERVDLAKLGVPFPAISKNASKIVF--TTRLENV---CGLMETQKK 303 (886)
Q Consensus 232 ~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~~gs~iii--TtR~~~v---~~~~~~~~~ 303 (886)
+..+.- +....+++.+|++|.|. +..+.+.+ +| ....|.-|+| ||.++.. ....+...+
T Consensus 91 ---------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp-~vE~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 91 ---------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LP-HVENGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred ---------HHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hh-hhcCCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 222222 22344899999999996 34444443 34 4567888887 6666543 333456789
Q ss_pred EEccCCChHHHHHHHHHHhcCCcC---CCCCCh-HHHHHHHHHHcCCchhHHHH---HHHHhcCCC---CHHHHHHHHHH
Q 035887 304 FKVECLGDNEAWELFLQKVGEETL---GSHPDI-PELAKTVAKECCGLPLALIT---TGRAMSGKK---TPEEWNYAIEM 373 (886)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~~~~~~~---~~~~~~-~~~~~~i~~~c~glPlai~~---~~~~l~~~~---~~~~w~~~~~~ 373 (886)
+.+++|+.+|-.+++.+.+..... .....+ ++.-..+++.++|--.++-. ++..+.... ..+..+.++..
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh
Confidence 999999999999999995532211 111112 44667789999987655422 222222212 22333333222
Q ss_pred HhhcccCCCCChhhhhhhHHhhhcCCCc
Q 035887 374 LRRSASEFPGMEKEVYPLLKFSYDSLSS 401 (886)
Q Consensus 374 l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 401 (886)
-.....+..+..-++..++..|...=++
T Consensus 238 ~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 238 RSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred hhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 1111122112223677777777766655
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=2.8e-08 Score=101.32 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=94.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
..+.+.|+|++|+|||+|++.+++... .....+.|++++... .... .+.+.++ +
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-------------------~~~~~~~-~ 91 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-------------------AVLENLE-Q 91 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-------------------HHHhhcc-c
Confidence 446789999999999999999999872 223456777763210 0000 1111222 3
Q ss_pred cEEEEEccccch---hhhhh-ccCCCCCCCCCCcEEEE-EcCC---------hhhhhccCccceEEccCCChHHHHHHHH
Q 035887 254 KFLLLLDDIWER---VDLAK-LGVPFPAISKNASKIVF-TTRL---------ENVCGLMETQKKFKVECLGDNEAWELFL 319 (886)
Q Consensus 254 ~~LlVlDdv~~~---~~~~~-l~~~~~~~~~~gs~iii-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 319 (886)
.-+||+||+|.. ..|+. +...+......|+.+|| |++. +++...+.....++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 358999999852 34442 22222212234556655 4443 3455555666789999999999999999
Q ss_pred HHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 320 QKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
+.+....... -++...-|++.+.|..-++..
T Consensus 172 ~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 172 RNAYQRGIEL---SDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhccCCHHHHHH
Confidence 9886443222 256678888888877666543
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.84 E-value=8.6e-10 Score=119.90 Aligned_cols=237 Identities=21% Similarity=0.172 Sum_probs=131.8
Q ss_pred CCcceeeeecCcccccc----ChhhhcCCCCCcEEEccCCCccc-------ccCccccCccCCCEEeccCCCcc-ccchh
Q 035887 531 CPRLLTLFLGINRLDTI----SSDFFDFMPSLKVLNLSKNRSLS-------QLPSGVSKLVSLQYLNLSETSIK-ELPHE 598 (886)
Q Consensus 531 ~~~Lr~L~l~~~~l~~~----~~~~~~~l~~Lr~L~Ls~~~~i~-------~lp~~i~~L~~L~~L~L~~~~i~-~LP~~ 598 (886)
+.+|+.|.+.++.+... ....+...+.|+.|+++++ .+. .++..+..+.+|++|++++|.+. ..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 44577777777755321 1222455666777777776 333 23345566777888888777665 34444
Q ss_pred hhccCC---CcEeecccccccc----ccccccccCC-CCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceE
Q 035887 599 LKALTK---LKCLNLEYTRYLQ----KIPRQLLCSF-SGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVL 670 (886)
Q Consensus 599 i~~L~~---L~~L~l~~~~~l~----~lp~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 670 (886)
+..+.+ |++|++++|+... .+... +..+ ++|+.|++.+|..... ........+..+++|+.|
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~---------~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA---------SCEALAKALRANRDLKEL 170 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch---------HHHHHHHHHHhCCCcCEE
Confidence 555554 8888887775321 12222 4455 7778888877765421 011233445566677777
Q ss_pred EEEeccchh--hhhhhcccccccccceEEEeecCCCCcccc----ccccccCccceEeeccCCCcceEEeccccccCccC
Q 035887 671 SVTLKSFGA--LQRLLSCQQLHSSTRALELRRCEDSKSWNI----LSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTRE 744 (886)
Q Consensus 671 ~~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~ 744 (886)
++..+.+.. +..+.......++|+.|++++|.. ..... ..+..+++|++|++++|. +....+..... ...
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~--~~~ 246 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALAS--ALL 246 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-ChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHH--HHh
Confidence 776555432 222222222225788888887742 21111 134567889999998864 33111111000 000
Q ss_pred CCCCCCccEEEeccCCccc----cC-cccccCCCCcEEEEecCc
Q 035887 745 PYGFNSLQRVTIACCSRLR----EV-TWLVFAPNLKIVHIESCY 783 (886)
Q Consensus 745 ~~~~~~L~~L~L~~c~~l~----~l-~~l~~l~~L~~L~L~~~~ 783 (886)
...++|++|++.+|.... .+ ..+..+++|+.|++++|.
T Consensus 247 -~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 247 -SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred -ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 134799999999984321 11 234556888888888874
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=3.3e-09 Score=101.44 Aligned_cols=126 Identities=29% Similarity=0.363 Sum_probs=55.2
Q ss_pred ccchhhhhccccceEEcCCCC-CCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccc-cCccCCCEEe
Q 035887 509 WEDRRKISLMRNKIVILSKPP-ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLN 586 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i-~~L~~L~~L~ 586 (886)
..+.|.|++.+|.+..+.... .+.+|++|++++|.+..+.. +..++.|++|++++| .++.+++.+ ..+++|+.|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence 347899999999998887665 57899999999999988764 788999999999999 898887655 3689999999
Q ss_pred ccCCCccccc--hhhhccCCCcEeeccccccccccc---cccccCCCCCCEEEeccC
Q 035887 587 LSETSIKELP--HELKALTKLKCLNLEYTRYLQKIP---RQLLCSFSGLEVLRMLDC 638 (886)
Q Consensus 587 L~~~~i~~LP--~~i~~L~~L~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 638 (886)
+++|+|.++- ..+..+++|++|++.+|+. ...+ .-++..+++|+.|+-...
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 9999988653 3477899999999999974 3333 234778899999986643
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.79 E-value=4.6e-07 Score=103.61 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=121.5
Q ss_pred CCccccchhhHHHHHHHHhc----C-CceEEEEEcCCCchhHHHHHHHHHhhccC--CCCCC--eEEEEEeCCCCCHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ----E-QVGIIGLHGMGGVGKTTLLTQINNKFLDA--PNNFE--VVIWVVVSKDMQLESV 223 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~~s~~~~~~~~ 223 (886)
++.+.|||+++++|..+|.. . ...++.|+|++|.|||++++.|.+..... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46789999999999998865 2 23578899999999999999998876211 11221 3678888777788899
Q ss_pred HHHHHHHhCCCC---CCCHHHHHHHHHHHhc---cCcEEEEEccccchh--hhhhccCCCCCCCCCCcEEEE--EcCChh
Q 035887 224 QEKIGERIGFLE---NRSLEEKASGIFKILS---KKKFLLLLDDIWERV--DLAKLGVPFPAISKNASKIVF--TTRLEN 293 (886)
Q Consensus 224 ~~~i~~~l~~~~---~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~iii--TtR~~~ 293 (886)
+..|.+++.... .....+....+...+. +...+||||+++... .-+.+...+.+....+++|+| +|...+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999999985433 2233344555555442 234589999997421 111111111111223555544 333222
Q ss_pred h--------hhccCccceEEccCCChHHHHHHHHHHhcCCc-CCCCCChHHHHHHHHHHcCCchhHHHHHHHHh
Q 035887 294 V--------CGLMETQKKFKVECLGDNEAWELFLQKVGEET-LGSHPDIPELAKTVAKECCGLPLALITTGRAM 358 (886)
Q Consensus 294 v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 358 (886)
. ...++ ...+...|++.++-.+++..++.... .-.+.-++-+|+.++...|-.-.|+.++-.+.
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 11222 23467799999999999999885321 11122233334444444444455655544443
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.77 E-value=4.2e-10 Score=116.49 Aligned_cols=293 Identities=16% Similarity=0.143 Sum_probs=164.0
Q ss_pred CcceeeeecCccc-c-ccChhhhcCCCCCcEEEccCCCccccc-Cccc-cCccCCCEEeccCC-Ccccc--chhhhccCC
Q 035887 532 PRLLTLFLGINRL-D-TISSDFFDFMPSLKVLNLSKNRSLSQL-PSGV-SKLVSLQYLNLSET-SIKEL--PHELKALTK 604 (886)
Q Consensus 532 ~~Lr~L~l~~~~l-~-~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i-~~L~~L~~L~L~~~-~i~~L--P~~i~~L~~ 604 (886)
..|+.|.+.++.- . .-...+...++++..|.+.+|..++.- -.++ ..+.+|++|+|..| .|+.. -.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4677788877721 1 112344577888888888888655421 1122 24678888888886 66632 223456788
Q ss_pred CcEeeccccccccc--cccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhh
Q 035887 605 LKCLNLEYTRYLQK--IPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQR 682 (886)
Q Consensus 605 L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~ 682 (886)
|.+|++++|..+.. +-. ...++.+|+.+...+|.... .......-.....+-.+++..++.-+-..
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~-----------le~l~~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELE-----------LEALLKAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred HHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccccc-----------HHHHHHHhccChHhhccchhhhccccchH
Confidence 88999988865443 111 13445556666555554322 00000000111111122211111001111
Q ss_pred hhcccccccccceEEEeecCCCCcccccccc-ccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCc
Q 035887 683 LLSCQQLHSSTRALELRRCEDSKSWNILSIA-DLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSR 761 (886)
Q Consensus 683 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 761 (886)
+.........|+.|..++|....+..+..++ +..+|+.|.+++|..+...-.. .-....+.|+.+++.+|..
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft-------~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT-------MLGRNCPHLERLDLEECGL 358 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh-------hhhcCChhhhhhcccccce
Confidence 2222233456788888888766655444433 4578888888888765432111 1123567888888888865
Q ss_pred cccC--cc-cccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccC-cCCCCCccEEeecc
Q 035887 762 LREV--TW-LVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRN-ALPFPNLLELFVSE 837 (886)
Q Consensus 762 l~~l--~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~ 837 (886)
..+- .. -.++|.|++|.|++|..+++.....+. .+......|..|.|++||.+++-..+ ...+++|+++++.+
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~---~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS---SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh---hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 5433 12 235688888888888777765221110 13345677888888888877654332 23477888888888
Q ss_pred CCCCCCCCC
Q 035887 838 CPNLKKLPL 846 (886)
Q Consensus 838 C~~L~~lp~ 846 (886)
|....+=|.
T Consensus 436 ~q~vtk~~i 444 (483)
T KOG4341|consen 436 CQDVTKEAI 444 (483)
T ss_pred hhhhhhhhh
Confidence 877766433
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=8.4e-10 Score=113.29 Aligned_cols=128 Identities=27% Similarity=0.335 Sum_probs=110.3
Q ss_pred chhhhhccccceEEcCCC--CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEec
Q 035887 511 DRRKISLMRNKIVILSKP--PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNL 587 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L 587 (886)
....+.+..|.+..+|.. ..+++||.|+|+.|.+..+.+..|.+++.|-.|-+-+++.|+.+|+ .|++|..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 555677888999988865 6789999999999999999888899999988887777449999996 5788999999999
Q ss_pred cCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCC
Q 035887 588 SETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 588 ~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
.-|++..++.. +..|++|..|.+.+|. +..++.+.+..+..++++++..+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 99999977665 8999999999999986 688998778899999999887766
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=1e-07 Score=97.72 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=102.5
Q ss_pred chhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 035887 159 LDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRS 238 (886)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 238 (886)
.+..++.+.+++.......+.|+|+.|+|||++|+.+++.. .......++++++.-.+. .
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHHh------H-----------
Confidence 34566777777665667789999999999999999999886 223445667765432110 0
Q ss_pred HHHHHHHHHHHhccCcEEEEEccccchh---hh-hhccCCCCCCCCCCcEEEEEcCChh---------hhhccCccceEE
Q 035887 239 LEEKASGIFKILSKKKFLLLLDDIWERV---DL-AKLGVPFPAISKNASKIVFTTRLEN---------VCGLMETQKKFK 305 (886)
Q Consensus 239 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~~~~~~~~gs~iiiTtR~~~---------v~~~~~~~~~~~ 305 (886)
..+.+.+++. -+||+||++... .| +.+...+......+.++|+||+... +...+.....++
T Consensus 82 -----~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 82 -----PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred -----HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 0111222232 389999997432 22 2333222211223457888888532 122222346799
Q ss_pred ccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 306 VECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 306 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
+.+++.++...++...+..... +--.+..+.+++.+.|.|..+..+.
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 9999999999998876532221 1124556778888888887775544
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=5.7e-07 Score=100.47 Aligned_cols=175 Identities=16% Similarity=0.151 Sum_probs=106.8
Q ss_pred CccccchhhHHH---HHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDK---VWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
..+||.+..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...| +.++....-..-.++++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH--
Confidence 357888877665 7788877777888999999999999999999876 2333 22222111111112222
Q ss_pred hCCCCCCCHHHHHHHHHHH-hccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEE--EcCChhh---hhccCccc
Q 035887 231 IGFLENRSLEEKASGIFKI-LSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVF--TTRLENV---CGLMETQK 302 (886)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iii--TtR~~~v---~~~~~~~~ 302 (886)
+..... ..+++.+|++|+++.. ...+.+...+. .|..++| ||.+... ........
T Consensus 82 -------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 82 -------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred -------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhccce
Confidence 111111 2457889999999853 33444433222 2455555 3444321 12223346
Q ss_pred eEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 303 KFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 303 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
.+.+.+++.++.+.++.+.+.........-..+..+.|++.|+|.+..+..+.
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 88999999999999999876432100002225567889999999997764443
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=7.7e-10 Score=118.65 Aligned_cols=151 Identities=29% Similarity=0.399 Sum_probs=92.7
Q ss_pred cccchhhhhccccceEEcCCC-CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEe
Q 035887 508 KWEDRRKISLMRNKIVILSKP-PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLN 586 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 586 (886)
.+..+..+.+..|.+..++.. .++..|.+|+++.|.+..+|.. ++.++ |++|-+++| .++.+|+.++.+.+|..||
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccccCCcccccchhHHHhh
Confidence 344555556666666555443 5566666667776666666655 33333 677777776 6677777777666777777
Q ss_pred ccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcC
Q 035887 587 LSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEH 666 (886)
Q Consensus 587 L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 666 (886)
.+.|.|..+|..++.|.+|+.|+++.|+ +..+|.. +..| .|..|+++.|.... ...++.+|++
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis~--------------iPv~fr~m~~ 235 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKISY--------------LPVDFRKMRH 235 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCceee--------------cchhhhhhhh
Confidence 7777777777777777777777776665 4566665 4433 36666666554432 3344566666
Q ss_pred CceEEEEeccch
Q 035887 667 LNVLSVTLKSFG 678 (886)
Q Consensus 667 L~~L~~~~~~~~ 678 (886)
|+.|-+..+...
T Consensus 236 Lq~l~LenNPLq 247 (722)
T KOG0532|consen 236 LQVLQLENNPLQ 247 (722)
T ss_pred heeeeeccCCCC
Confidence 666666655543
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.5e-09 Score=107.59 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=49.4
Q ss_pred cccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCc--cccCccc
Q 035887 691 SSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSR--LREVTWL 768 (886)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--l~~l~~l 768 (886)
..|+.|+|+++..+..........++.|..|.++.| ++.++. .......-....|++|++|.+..|+. ...+..+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~--~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIA--EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhcccc-Ccchhc--CCCccchhhhcccccceeeecccCccccccccchh
Confidence 356666676665444332234556677777777654 233221 11000001124688899998888855 3444455
Q ss_pred ccCCCCcEEEEecC
Q 035887 769 VFAPNLKIVHIESC 782 (886)
Q Consensus 769 ~~l~~L~~L~L~~~ 782 (886)
..+++|+.|.+..+
T Consensus 323 ~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 323 RTLENLKHLRITLN 336 (505)
T ss_pred hccchhhhhhcccc
Confidence 66778887776544
No 46
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.62 E-value=6.3e-07 Score=91.42 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=106.7
Q ss_pred HHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 035887 166 VWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASG 245 (886)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (886)
|.+++.++..+-+.+||++|+||||||+.+.+.. +... ..||..|-...-..-.++|+++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 4556667888999999999999999999999886 3222 5577776654444444444443321
Q ss_pred HHHHhccCcEEEEEcccc--chhhhhhccCCCCCCCCCCcEEEE--EcCChhh---hhccCccceEEccCCChHHHHHHH
Q 035887 246 IFKILSKKKFLLLLDDIW--ERVDLAKLGVPFPAISKNASKIVF--TTRLENV---CGLMETQKKFKVECLGDNEAWELF 318 (886)
Q Consensus 246 l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~~gs~iii--TtR~~~v---~~~~~~~~~~~l~~L~~~e~~~lf 318 (886)
...+.++|.+|++|.|. +..+.+. .+| .-.+|+-++| ||.+... +.......++.|++|..++...++
T Consensus 216 -~~~l~krkTilFiDEiHRFNksQQD~---fLP-~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 216 -EKSLTKRKTILFIDEIHRFNKSQQDT---FLP-HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred -HHhhhcceeEEEeHHhhhhhhhhhhc---ccc-eeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 12355789999999995 3333333 245 5567887777 7776653 344556678999999999999999
Q ss_pred HHHhc---CCcC----CCCCC---hHHHHHHHHHHcCCchhH
Q 035887 319 LQKVG---EETL----GSHPD---IPELAKTVAKECCGLPLA 350 (886)
Q Consensus 319 ~~~~~---~~~~----~~~~~---~~~~~~~i~~~c~glPla 350 (886)
.+... .... -+++. ...+..-++..|+|-..+
T Consensus 291 ~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 291 MRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred HHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 88542 2111 11111 233556677778887644
No 47
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.2e-06 Score=91.51 Aligned_cols=197 Identities=18% Similarity=0.203 Sum_probs=128.8
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
+.+.+||.+++++...|.. +...-+.|+|..|.|||+.++.|.+.........+ +++|++-......+++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4589999999999988864 33444899999999999999999999832222233 899999999999999999999
Q ss_pred HhCCCC--CCCHHHHHHHHHHHhcc--CcEEEEEccccchhhh--hhccCCCCCCCCCCcEEEE--EcCChhhh------
Q 035887 230 RIGFLE--NRSLEEKASGIFKILSK--KKFLLLLDDIWERVDL--AKLGVPFPAISKNASKIVF--TTRLENVC------ 295 (886)
Q Consensus 230 ~l~~~~--~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~--~~l~~~~~~~~~~gs~iii--TtR~~~v~------ 295 (886)
+++... .....+....+.+.+.. +.+++|||+++....- +-+-..+.......++|++ .+-+....
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 996333 45667777777777764 7899999999743211 1111111111222455443 33333322
Q ss_pred --hccCccceEEccCCChHHHHHHHHHHhc---CCcCCCCCChHHHHHHHHHHcCC-chhHHHH
Q 035887 296 --GLMETQKKFKVECLGDNEAWELFLQKVG---EETLGSHPDIPELAKTVAKECCG-LPLALIT 353 (886)
Q Consensus 296 --~~~~~~~~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~ 353 (886)
..++. ..+...|.+.+|-...+..++. ... ..+++.-++...++..-+| .-.|+..
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 22222 3488999999999999998873 223 2334444444444444444 4445443
No 48
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=1.3e-07 Score=86.99 Aligned_cols=120 Identities=19% Similarity=0.150 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
.+++.|.|+.|+||||++++++.+. . ....+++++..+........ .+ ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLAD--------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhh--------------hh-hHHHHHHhhccCC
Confidence 4689999999999999999999887 2 45667788765542211100 00 2233344444478
Q ss_pred EEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhc------cCccceEEccCCChHHH
Q 035887 255 FLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGL------METQKKFKVECLGDNEA 314 (886)
Q Consensus 255 ~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 314 (886)
.++++|++....+|......+. +.....+|++|+.+...... .+....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999988878877655554 34456899999998765422 22335789999998874
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=9.3e-09 Score=110.54 Aligned_cols=131 Identities=25% Similarity=0.409 Sum_probs=96.4
Q ss_pred cccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEE
Q 035887 506 VRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYL 585 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 585 (886)
...+..+..+++..|.+..+|...-.--|++|.+++|+++.+|.. ++....|..||.+.| .+..+|.-++.|..|+.|
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHH
Confidence 344556677777777777766554444677888888877777776 557777888888888 777788788888888888
Q ss_pred eccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 586 NLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 586 ~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
+++.|++..+|..++.| .|..||++.|+ +..+|-. +.+|+.|++|.+.+|+.-
T Consensus 195 ~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeeeeccCCCC
Confidence 88888888888877744 57788887665 6778876 778888888888777653
No 50
>PRK08727 hypothetical protein; Validated
Probab=98.57 E-value=1.1e-06 Score=89.76 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=99.2
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
+.++|-......+.....+.....+.|+|+.|+|||+|++.+++.. . .....+.|+++.+ ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~--~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-E--QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEeHHH------hhhhHH-----
Confidence 3444444444444444333344579999999999999999999886 2 2334667776432 111110
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEccccch---hhhhh-ccCCCCCCCCCCcEEEEEcCChh---------hhhccCc
Q 035887 234 LENRSLEEKASGIFKILSKKKFLLLLDDIWER---VDLAK-LGVPFPAISKNASKIVFTTRLEN---------VCGLMET 300 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~~~~~~~~gs~iiiTtR~~~---------v~~~~~~ 300 (886)
. ..+.+ .+.-+||+||+... ..|.. +...+......|..||+|++... +...+..
T Consensus 86 ----------~-~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~ 153 (233)
T PRK08727 86 ----------D-ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ 153 (233)
T ss_pred ----------H-HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc
Confidence 0 11111 23358999999632 22322 21111111234667999998522 2233334
Q ss_pred cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 301 QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 301 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
...+++++++.++-.+++.+++....... -++...-|++.+.|..-.+
T Consensus 154 ~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 154 CIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 56899999999999999998775332122 2456778888888766554
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.55 E-value=1.6e-05 Score=92.71 Aligned_cols=199 Identities=16% Similarity=0.044 Sum_probs=117.1
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC---CeEEEEEeCC---CCCHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF---EVVIWVVVSK---DMQLESVQEKI 227 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~---~~~~~~~~~~i 227 (886)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+.. ..+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4689999999999888876667789999999999999999998875 322222 1234554432 11222221111
Q ss_pred ---------------HHHhCCCC-------------------CCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhc
Q 035887 228 ---------------GERIGFLE-------------------NRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKL 271 (886)
Q Consensus 228 ---------------~~~l~~~~-------------------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l 271 (886)
+...+... ..-....+..+.+.++++++.++-|+.|.. ..|+.+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11111100 111233567788888888888887766643 456666
Q ss_pred cCCCCCCCCCCcEEEE--EcCChhh-hhc-cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc
Q 035887 272 GVPFPAISKNASKIVF--TTRLENV-CGL-METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL 347 (886)
Q Consensus 272 ~~~~~~~~~~gs~iii--TtR~~~v-~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 347 (886)
...+. ...+...|+| ||++... ... ......+.+.+++.+|.+.++.+.+....... -.+..+.|.+.+..-
T Consensus 313 k~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~g 388 (615)
T TIGR02903 313 KKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEG 388 (615)
T ss_pred hhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcH
Confidence 65555 3444444555 5664432 111 12234678999999999999999875322111 134445555555444
Q ss_pred hhHHHHHHHH
Q 035887 348 PLALITTGRA 357 (886)
Q Consensus 348 Plai~~~~~~ 357 (886)
+-|+..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=3.7e-09 Score=109.65 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCCccEEEeccCCccccC--cccc-cCCCCcEEEEecCccchhh-ccccccCCCCCCCCCCcccEEecccccccccc---
Q 035887 748 FNSLQRVTIACCSRLREV--TWLV-FAPNLKIVHIESCYDMDEI-ISAWKLGEVPGLNPFAKLQYLRLQVLTKLKII--- 820 (886)
Q Consensus 748 ~~~L~~L~L~~c~~l~~l--~~l~-~l~~L~~L~L~~~~~l~~i-~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i--- 820 (886)
.++|+.|.+++|..+++. ..++ +.+.|+.+++.+|..+.+- .. ....++|.|+.|.|++|...+.-
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-------sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-------SLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-------hhccCCchhccCChhhhhhhhhhhhh
Confidence 355555555555444332 1222 2355555555555433332 00 12234555555555555443332
Q ss_pred --ccCcCCCCCccEEeeccCCCCCC
Q 035887 821 --FRNALPFPNLLELFVSECPNLKK 843 (886)
Q Consensus 821 --~~~~~~~p~L~~L~i~~C~~L~~ 843 (886)
.....++..|+.+++.+||.++.
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhhhccccccccceeeecCCCCchH
Confidence 11223344455555555555443
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1.5e-08 Score=100.26 Aligned_cols=132 Identities=25% Similarity=0.416 Sum_probs=109.5
Q ss_pred ccccccchhhhhccccceEEcCCC-CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCC
Q 035887 505 EVRKWEDRRKISLMRNKIVILSKP-PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQ 583 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~ 583 (886)
....|+.+..+++++|.+..+... .-.+++|.|+++.|.+..+.. +..+++|..||||+| .++++-..=.+|-|.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 345688999999999998877665 346899999999998877655 778999999999999 7776655445688999
Q ss_pred EEeccCCCccccchhhhccCCCcEeeccccccccccc--cccccCCCCCCEEEeccCCCcc
Q 035887 584 YLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIP--RQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 584 ~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
+|.|++|.|+.| +++++|.+|..||+++|+ +.++. .+ ||+|+.|++|.+.+|+...
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~-IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNH-IGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcc-cccccHHHHHhhcCCCccc
Confidence 999999999999 589999999999999996 45443 23 8999999999999998754
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=4.7e-06 Score=95.30 Aligned_cols=182 Identities=14% Similarity=0.150 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC------------------CCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP------------------NNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 214 (886)
+++||.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+...-.. +.|.-++++..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 3689999999999999987764 4567999999999999998888761000 11112333332
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCC
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRL 291 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~ 291 (886)
+....+.++ ++++ +.+.. -..++.-++|||+++.. ..+..+...+. ......++|+||++
T Consensus 96 as~rgVDdI-ReLI---------------e~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILaTtd 158 (830)
T PRK07003 96 ASNRGVDEM-AALL---------------ERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILATTD 158 (830)
T ss_pred cccccHHHH-HHHH---------------HHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEEECC
Confidence 222111111 1111 11111 11234558889999743 34555544443 33446777777776
Q ss_pred hh-hh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHHH
Q 035887 292 EN-VC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITTG 355 (886)
Q Consensus 292 ~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 355 (886)
.. +. ...+....++++.++.++..+.+.+.+..+... --.+..+.|++.++|... |+..+-
T Consensus 159 ~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 43 32 222345689999999999999998887544322 124567889999998664 444433
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=4.2e-06 Score=90.06 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=114.3
Q ss_pred ccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhc---cCCCCCCeEEEEEe-CCCCCHHHHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFL---DAPNNFEVVIWVVV-SKDMQLESVQEKIGE 229 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~ 229 (886)
.++|-+..++.+.+.+..++. ..+.++|+.|+||||+|+.++.... ....|+|...|... +......++ +++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHH
Confidence 578999999999999987665 5668999999999999999998641 12356676666552 222333332 22222
Q ss_pred HhCCCCCCCHHHHHHHHHHHhccCcEEEEEcccc--chhhhhhccCCCCCCCCCCcEEEEEcCChhhh--hccCccceEE
Q 035887 230 RIGFLENRSLEEKASGIFKILSKKKFLLLLDDIW--ERVDLAKLGVPFPAISKNASKIVFTTRLENVC--GLMETQKKFK 305 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~--~~~~~~~~~~ 305 (886)
.+... -..+++=++|+|+++ +...+..+...+. ....++.+|++|.+.+.. ...+....+.
T Consensus 84 ~~~~~--------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SRc~~~~ 148 (313)
T PRK05564 84 EVNKK--------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSRCQIYK 148 (313)
T ss_pred HHhcC--------------cccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhhceeee
Confidence 22211 112344456666654 5566777766665 556788888888765421 1123356899
Q ss_pred ccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 306 VECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 306 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
+.++++++....+.+..... -.+.++.++..++|.|.-+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 149 LNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 99999999988887654211 13346788999999987654
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=2.6e-06 Score=93.23 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC-eEEEEEeCCCCCH--HHHHH--HHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE-VVIWVVVSKDMQL--ESVQE--KIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~--~~~~~--~i~ 228 (886)
..++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+.+.. . ...+. ..+.+++++-.+. ..+.. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhhcchhhhhcCcchh
Confidence 4679999999999999988776778899999999999999999876 2 12222 2345544332100 00000 000
Q ss_pred HHhCCC--CCC-CHHHHHHHHHHHh-----ccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCChh-hhh-
Q 035887 229 ERIGFL--ENR-SLEEKASGIFKIL-----SKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRLEN-VCG- 296 (886)
Q Consensus 229 ~~l~~~--~~~-~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~~-v~~- 296 (886)
..++.. ... ..+.....++... .+.+-+||+||+... .....+...+. .....+++|+||.... +..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhhCchh
Confidence 000000 000 1111111111111 133458999999643 22333332222 2234567777775432 211
Q ss_pred ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 297 LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 297 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
.-.....+.+.+++.++...++.+.+...... --.+..+.+++.++|.+-.+.
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 12234578999999999999998876543322 124567888999988765553
No 57
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.47 E-value=2.2e-06 Score=87.75 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=101.7
Q ss_pred CCccccchh-hHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 153 EPTIVGLDS-TFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 153 ~~~~vGr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
++.++|... .+..+.++......+.+.|+|+.|+|||+|++.+++.. . .....+.++++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHHHhh------------
Confidence 345567433 33334444444455789999999999999999999886 2 2234667776643100
Q ss_pred CCCCCCCHHHHHHHHHHHhccCcEEEEEccccch---hhhhhc-cCCCCCCCCCC-cEEEEEcCCh---------hhhhc
Q 035887 232 GFLENRSLEEKASGIFKILSKKKFLLLLDDIWER---VDLAKL-GVPFPAISKNA-SKIVFTTRLE---------NVCGL 297 (886)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l-~~~~~~~~~~g-s~iiiTtR~~---------~v~~~ 297 (886)
...+ +.+.+.. --+|++||+... ..|+.. ...+......| .++|+||+.. ++...
T Consensus 87 ------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 87 ------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred ------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 0011 1111211 247899999642 334322 12221111233 4799999854 23344
Q ss_pred cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 298 METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 298 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
+....+++++++++++-.+++.+++...... --+++..-|++.+.|..-++.
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHH
Confidence 5556789999999999999998867433211 225667788888887665553
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=1.5e-06 Score=82.33 Aligned_cols=124 Identities=19% Similarity=0.121 Sum_probs=75.6
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 035887 157 VGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLEN 236 (886)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 236 (886)
+|++..+..+...+.....+.+.|+|++|+||||+|+.+++.. . ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788889999998877667889999999999999999999987 2 223456777665543322222111100
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEccccch-----hhhhhccCCCCCC--CCCCcEEEEEcCChh
Q 035887 237 RSLEEKASGIFKILSKKKFLLLLDDIWER-----VDLAKLGVPFPAI--SKNASKIVFTTRLEN 293 (886)
Q Consensus 237 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~--~~~gs~iiiTtR~~~ 293 (886)
............++.++|+||++.. ..+..+....... ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223457789999999842 2222222222101 135778888888653
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=8.7e-06 Score=92.87 Aligned_cols=243 Identities=17% Similarity=0.175 Sum_probs=136.3
Q ss_pred CccccchhhHHHHHHHHhcC----CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQE----QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
+.++|.++.++++.+|+..- ..+.+.|+|++|+||||+|+.++++. .|+ ++-++.++..+... ...++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~-i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADV-IERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHH-HHHHHH
Confidence 46899999999999998742 26789999999999999999999986 133 33445554333322 222222
Q ss_pred HhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh------hhhhccCCCCCCCCCCcEEEEEcCChh-hh--hccCc
Q 035887 230 RIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV------DLAKLGVPFPAISKNASKIVFTTRLEN-VC--GLMET 300 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~~gs~iiiTtR~~~-v~--~~~~~ 300 (886)
..... ...+..++-+||+|+++... .+..+...+. ..+..||+|+.+.. .. ..-..
T Consensus 87 ~~~~~------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 87 EAATS------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred Hhhcc------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhhHhcc
Confidence 22110 00111367899999997532 2333332222 22344666664422 21 11123
Q ss_pred cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCC---CHHHHHHHHHHHhhc
Q 035887 301 QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKK---TPEEWNYAIEMLRRS 377 (886)
Q Consensus 301 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~---~~~~w~~~~~~l~~~ 377 (886)
...+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+.... +.+.-..+. .
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~----~- 223 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG----R- 223 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh----c-
Confidence 467899999999999988887754332222 46688999999998776644333333321 222222111 0
Q ss_pred ccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCc
Q 035887 378 ASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGY 438 (886)
Q Consensus 378 ~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 438 (886)
.....+++.++..-+..=..+.+...+.. ..++- ..+-.|+.+.+....
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhcccccc
Confidence 11123566666644432111123332222 12222 356789999997654
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=3.5e-07 Score=93.35 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=64.4
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCC---CHHHH
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD--MQLESVQEKI-----GERIGFLENR---SLEEK 242 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~---~~~~~ 242 (886)
+....++|+|++|+|||||++.++++. .. .+|+.++|+.+++. ++..++++++ +.+++.+... .....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 456789999999999999999999997 33 38999999998777 7999999999 4444432200 01111
Q ss_pred HHHHHHH-hccCcEEEEEccccc
Q 035887 243 ASGIFKI-LSKKKFLLLLDDIWE 264 (886)
Q Consensus 243 ~~~l~~~-l~~k~~LlVlDdv~~ 264 (886)
....... -+++++++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 2222222 247999999999964
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.7e-06 Score=96.58 Aligned_cols=180 Identities=17% Similarity=0.206 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCceE-EEEEcCCCchhHHHHHHHHHhhccCCCC-------------------CCeEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGI-IGLHGMGGVGKTTLLTQINNKFLDAPNN-------------------FEVVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 213 (886)
..+||-+..++.|.+++..+++.- +.++|+.|+||||+|+.+++... -... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999999998877654 57999999999999999998762 1111 11122222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcC
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIF-KILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTR 290 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR 290 (886)
.+....+.. .++|.+. +. .-..+++-++|+|++.. ......+...+- ......++|++|.
T Consensus 95 Aas~~kVDd-IReLie~---------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFILaTT 157 (944)
T PRK14949 95 AASRTKVDD-TRELLDN---------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFLLATT 157 (944)
T ss_pred cccccCHHH-HHHHHHH---------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEEEECC
Confidence 211111111 1222211 11 11246677999999974 344555443333 2334455655554
Q ss_pred C-hhhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 291 L-ENVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 291 ~-~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
+ ..+. ........|++++|+.++..+.+.+.+..... ..-.+....|++.++|.|.-+..+
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 4442 22234578999999999999999887744321 122456788999999988654433
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.41 E-value=5.6e-06 Score=89.24 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE-VVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..++|.++.++.|..++..++.+-+.++|++|+||||+|+.+++... ...|. .++-+..++..+...+ +++++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVV-RNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHH-HHHHHHHH
Confidence 35789998888888888877777788999999999999999998861 12232 2223333333332222 22221111
Q ss_pred CCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCCh-hhh-hccCccceEEccC
Q 035887 233 FLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRLE-NVC-GLMETQKKFKVEC 308 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v~-~~~~~~~~~~l~~ 308 (886)
.... ..-.++.-++++|+++.. .....+...+. .....+++|++|... .+. ...+....+++.+
T Consensus 90 ~~~~-----------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 90 QKKV-----------TLPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred hccc-----------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 0000 000134668999999743 22233322222 223456777766542 221 1112345789999
Q ss_pred CChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 309 LGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 309 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+++++....+...+......-+ .+....|++.++|..-.+
T Consensus 158 l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 158 LSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 9999999999888754432222 456788999998876544
No 63
>PRK09087 hypothetical protein; Validated
Probab=98.40 E-value=6.8e-06 Score=83.25 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
..+.+.|+|+.|+|||+|++.++... . ..+++.. .+..+++. .+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-------------------~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-------------------AAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-------------------hhhc-
Confidence 34678999999999999999988765 1 1144321 11111111 1111
Q ss_pred cEEEEEccccc----hhhhhhccCCCCCCCCCCcEEEEEcCC---------hhhhhccCccceEEccCCChHHHHHHHHH
Q 035887 254 KFLLLLDDIWE----RVDLAKLGVPFPAISKNASKIVFTTRL---------ENVCGLMETQKKFKVECLGDNEAWELFLQ 320 (886)
Q Consensus 254 ~~LlVlDdv~~----~~~~~~l~~~~~~~~~~gs~iiiTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~ 320 (886)
-+|++||+.. ...+-.+... ....|..||+|++. ++....+.....+++++++.++-.+++++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~---~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINS---VRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHH---HHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 2788899953 2222222222 22346779998874 23344455668899999999999999999
Q ss_pred HhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 321 KVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
++....... -+++..-|++.+.|..-++..
T Consensus 165 ~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 165 LFADRQLYV---DPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHcCCCC---CHHHHHHHHHHhhhhHHHHHH
Confidence 885433222 256678888888877766643
No 64
>PTZ00202 tuzin; Provisional
Probab=98.39 E-value=1e-05 Score=86.19 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=104.6
Q ss_pred CCccccchhhHHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
.+.|+||+.+...+...|.+ +..+++.|.|++|+|||||++.+.... . + ...+++.. +..+++..|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHHHHH
Confidence 46899999999999999865 234689999999999999999999765 1 1 12233222 77999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHh-----c-cCcEEEEEc--cccchh-hhhhccCCCCCCCCCCcEEEEEcCChhhhhc---
Q 035887 230 RIGFLENRSLEEKASGIFKIL-----S-KKKFLLLLD--DIWERV-DLAKLGVPFPAISKNASKIVFTTRLENVCGL--- 297 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlD--dv~~~~-~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~--- 297 (886)
+|+.+......++...|.+.+ . +++.+||+- +-.+.. ...+. ..+. ....-|.|++----+.+...
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la-~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALA-CDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHH-ccchhheeeeeehHhhcchhccc
Confidence 999865444455555555544 2 566666653 222211 11111 1111 34556778876665544221
Q ss_pred cCccceEEccCCChHHHHHHHHHHh
Q 035887 298 METQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 298 ~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
...-..|.+++++.++|.++..+..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 1233578999999999999877654
No 65
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7.2e-08 Score=100.82 Aligned_cols=179 Identities=20% Similarity=0.173 Sum_probs=115.5
Q ss_pred cccchhhhhccccceEEcC---CCCCCCcceeeeecCccccccC--hhhhcCCCCCcEEEccCCCcccccCcc--ccCcc
Q 035887 508 KWEDRRKISLMRNKIVILS---KPPACPRLLTLFLGINRLDTIS--SDFFDFMPSLKVLNLSKNRSLSQLPSG--VSKLV 580 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~l~---~~~~~~~Lr~L~l~~~~l~~~~--~~~~~~l~~Lr~L~Ls~~~~i~~lp~~--i~~L~ 580 (886)
.++++|.+++.++.....+ ....|++++.|+++.|-+..+- ..+...+++|+.|+|+.| .+...-++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhh
Confidence 4568888888888776655 3478999999999999544332 345678999999999998 33322211 23578
Q ss_pred CCCEEeccCCCcc--ccchhhhccCCCcEeeccccccc--cccccccccCCCCCCEEEeccCCCcccccccccccCCccc
Q 035887 581 SLQYLNLSETSIK--ELPHELKALTKLKCLNLEYTRYL--QKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEI 656 (886)
Q Consensus 581 ~L~~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l--~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 656 (886)
+|+.|.|++|.++ ++-.....+++|..|+|.+|..+ ...+ ..-+..|+.|++++|.... ..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~------------~~ 262 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLID------------FD 262 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccc------------cc
Confidence 9999999999887 34344556789999999988422 2222 2356779999999887653 11
Q ss_pred hHHHhcCCcCCceEEEEeccchhhhhhhc----ccccccccceEEEeecC
Q 035887 657 LVEELITLEHLNVLSVTLKSFGALQRLLS----CQQLHSSTRALELRRCE 702 (886)
Q Consensus 657 ~~~~l~~L~~L~~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~ 702 (886)
.......|+.|+.|++..+.+..+..... .....+.|+.|.+..++
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 22335566666666666555544332211 11223456666665543
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.8e-07 Score=72.23 Aligned_cols=58 Identities=40% Similarity=0.640 Sum_probs=27.8
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCC
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETS 591 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 591 (886)
+|++|++.+|.+..+|+..|.++++|++|++++| .++.+| ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555555555444555555555555544 343333 234444455555554443
No 67
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.39 E-value=1.1e-05 Score=87.58 Aligned_cols=179 Identities=11% Similarity=0.140 Sum_probs=106.0
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEV-VIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
.+++|+++.++.+.+++..+..+.+.|+|+.|+||||+|+.+.+... ...+.. .+-+..+.......+...+ ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i-~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKI-KEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHH-HHHH
Confidence 35799999999999999887777789999999999999999998862 122211 1222222222222111111 1110
Q ss_pred CCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCCh-hhhh-ccCccceEEccC
Q 035887 233 FLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRLE-NVCG-LMETQKKFKVEC 308 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v~~-~~~~~~~~~l~~ 308 (886)
... ......+-++++|+++.. .....+...+. .....+++|+++... .+.. .......+++.+
T Consensus 94 ~~~------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 94 RTA------------PVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred hcC------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 000 000123568999998642 22333333332 223346677766432 2211 112345789999
Q ss_pred CChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 309 LGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 309 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
++.++....+...+...... --.+....+++.++|.+.-+
T Consensus 161 l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 99999999988877543321 12456788999999987664
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=7.8e-06 Score=92.55 Aligned_cols=179 Identities=14% Similarity=0.132 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccC------------------CCCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDA------------------PNNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~F~~~~wv~~ 214 (886)
..+||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+...-. .+.|.-++.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 3689999999999999988764 577899999999999999998876100 001111222222
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCC
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIF-KILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRL 291 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~ 291 (886)
+....+.++ ++++ ..+. .-..++.-++|+|++.. ......+...+. ....+.++|++|.+
T Consensus 95 As~~~VddI-Reli---------------~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd 157 (702)
T PRK14960 95 ASRTKVEDT-RELL---------------DNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTD 157 (702)
T ss_pred cccCCHHHH-HHHH---------------HHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECC
Confidence 211111111 1111 1111 11235666899999974 334444444443 33345677777665
Q ss_pred hh-hh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 292 EN-VC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 292 ~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
.. +. ...+....+++.+++.++....+.+.+...... --.+....|++.++|.+..+.
T Consensus 158 ~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 158 PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 32 32 222445789999999999999998877543311 224557889999999875553
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.4e-05 Score=87.55 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=106.2
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCC-------------------CCeEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNN-------------------FEVVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 213 (886)
+.++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+.+.. ..... +....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 4689999999999999987665 467899999999999999999876 11000 11112222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCC
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRL 291 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~ 291 (886)
.+....... .+++.+.+... -..+++-++|+|++... ..++.+...+. ......++|++|.+
T Consensus 95 ~~~~~~v~~-ir~i~~~~~~~--------------p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~ 158 (363)
T PRK14961 95 AASRTKVEE-MREILDNIYYS--------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTD 158 (363)
T ss_pred ccccCCHHH-HHHHHHHHhcC--------------cccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCC
Confidence 111111111 11111111100 01234569999999743 33444444443 33445667776654
Q ss_pred h-hhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 292 E-NVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 292 ~-~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
. .+.. ..+....+++.+++.++..+.+.+.+..... .--.+.+..|++.++|.|..+
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 3 3322 1233468999999999999988887643321 112456788999999988654
No 70
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=7.2e-07 Score=82.65 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccC--CCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDA--PNNFEVVIWVVVSKDMQLESVQEKIGERIGFLEN--RSLEEKASGIFKI 249 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~l~~~ 249 (886)
+-+++.|+|.+|+|||++++.+.++.... ...-..++|+.+....+...+...|+++++.... .+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34688999999999999999999986210 0014467799998888999999999999998763 4778888888888
Q ss_pred hccCcE-EEEEccccch---hhhhhccCCCCCCCCCCcEEEEEcCC
Q 035887 250 LSKKKF-LLLLDDIWER---VDLAKLGVPFPAISKNASKIVFTTRL 291 (886)
Q Consensus 250 l~~k~~-LlVlDdv~~~---~~~~~l~~~~~~~~~~gs~iiiTtR~ 291 (886)
+...+. +||+||++.. ..++.+.... ...+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~---~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL---NESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT---CSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH---hCCCCeEEEEECh
Confidence 887665 9999999754 2233332221 2556677776654
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.3e-05 Score=90.81 Aligned_cols=191 Identities=17% Similarity=0.123 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
.+++|-+..++.|.+++..++.. .+.++|++|+||||+|+.+++.. .-.+.+...+|.|.+... +....+..+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 35899999999999999887654 56899999999999999998876 211222223333221100 0000000000000
Q ss_pred CCCCCCHHHHHHHHHHH-----hccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcC-Chhhhh-ccCccce
Q 035887 233 FLENRSLEEKASGIFKI-----LSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTR-LENVCG-LMETQKK 303 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR-~~~v~~-~~~~~~~ 303 (886)
.......+... .+.+. +.+++-++|+|+++.. ..+..+...+. .......+|++|. ...+.. .......
T Consensus 92 ~~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~SRc~~ 169 (504)
T PRK14963 92 AASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILSRTQH 169 (504)
T ss_pred ccccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhcceEE
Confidence 00011111111 12222 2345668999999743 44555544443 2333455555554 333322 2233568
Q ss_pred EEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 304 FKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+++.+++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 99999999999999998875433111 2456788999999988654
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8e-06 Score=92.21 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC-----------------------CCCCeE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP-----------------------NNFEVV 209 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------------~~F~~~ 209 (886)
.++||-+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+...-.. +.|.-+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 36899999999999999887654 568999999999999999988762100 001112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCc
Q 035887 210 IWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI----LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNAS 283 (886)
Q Consensus 210 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs 283 (886)
+++..+.. ...+++.+.+... ..++.-++|+|+++. ...+..+...+. ......
T Consensus 96 iEIdAas~-------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v 155 (700)
T PRK12323 96 IEMDAASN-------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHV 155 (700)
T ss_pred eEeccccc-------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCc
Confidence 22222211 1222222222211 234566899999974 344555544443 233445
Q ss_pred EEEE-EcCChhhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 284 KIVF-TTRLENVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 284 ~iii-TtR~~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
++|+ ||....+. ...+....+.+..++.++..+.+.+.+...... .-.+..+.|++.++|.|..+..+
T Consensus 156 ~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 156 KFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5555 55444443 223345789999999999999988877543311 11345688999999999755433
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.9e-08 Score=99.63 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCCccEEEeccCCcccc--CcccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccc
Q 035887 747 GFNSLQRVTIACCSRLRE--VTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLT 815 (886)
Q Consensus 747 ~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~ 815 (886)
.+|+|..|+|++|..+++ +..+-+++.|++|+++.|+.+.--. +-.+..-|+|.+|++.||-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~-------~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET-------LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH-------eeeeccCcceEEEEecccc
Confidence 467888888888776664 2235678888888888887543211 1245667888888888864
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.9e-05 Score=88.87 Aligned_cols=177 Identities=16% Similarity=0.200 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCCC-----------------------CeE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNNF-----------------------EVV 209 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-----------------------~~~ 209 (886)
.+++|-+..+..+...+..++. ..+.++|+.|+||||+|+.+++... -.... .-+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 3579999999999888877654 5788999999999999999998762 11100 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEE
Q 035887 210 IWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIF-KILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIV 286 (886)
Q Consensus 210 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~ii 286 (886)
+.+.......+.++ .++.+... .-+.+++-++|+|+++. ...+..+...+. .....+.+|
T Consensus 100 ~eidaas~~~vd~I----------------r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI 162 (507)
T PRK06645 100 IEIDAASKTSVDDI----------------RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFI 162 (507)
T ss_pred EEeeccCCCCHHHH----------------HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEE
Confidence 11221111111111 11111111 11345677899999985 345666654444 334455655
Q ss_pred E-EcCChhhhhc-cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 287 F-TTRLENVCGL-METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 287 i-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+ ||+...+... ......+++.+++.++....+.+.+....... -.+....|++.++|.+.-+
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 4 5555555332 23446799999999999999998885443111 2345677999999987554
No 75
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=1.2e-06 Score=102.91 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=87.0
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCcc-ccchhhhccCCCcEeecc
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK-ELPHELKALTKLKCLNLE 611 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~l~ 611 (886)
.++.|+|.+|.+....+..+..+++|+.|+|++|.....+|..++.+.+|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788889888887555555888999999999998333488888999999999999999887 788889999999999999
Q ss_pred ccccccccccccccC-CCCCCEEEeccCCCcc
Q 035887 612 YTRYLQKIPRQLLCS-FSGLEVLRMLDCGYSR 642 (886)
Q Consensus 612 ~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~~~ 642 (886)
+|.....+|.. ++. +.++..+++.+|....
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcccc
Confidence 99876788876 444 3567778887776543
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=2.9e-07 Score=103.19 Aligned_cols=107 Identities=29% Similarity=0.430 Sum_probs=65.8
Q ss_pred CCCCcceeeeecCccccccChhhhcCCC-CCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcE
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMP-SLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKC 607 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~-~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~ 607 (886)
...+.+..|++.++.+..+++. ...+. +|+.|+++++ .+..+|..++.+++|+.|+++.|++.++|...+.+.+|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3445566666666666666553 23332 6666666666 6666666666666666666666666666666666666666
Q ss_pred eeccccccccccccccccCCCCCCEEEeccCC
Q 035887 608 LNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 608 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
|++++|. +..+|.. +..+..|++|.+.++.
T Consensus 191 L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 191 LDLSGNK-ISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred eeccCCc-cccCchh-hhhhhhhhhhhhcCCc
Confidence 6666664 5666653 3445556666666553
No 77
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.33 E-value=1.1e-05 Score=78.91 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=94.0
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
.+|||-++-++.+.-++.. +...-+.+||++|+||||||..+.+.. ...|. +++.+.-...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SC--------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhH--------
Confidence 4689999888776554432 356778899999999999999999987 34442 3332111111
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhh-------hhhccCCCCCCCC-----------CCcEEEEE
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVD-------LAKLGVPFPAISK-----------NASKIVFT 288 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~-------~~~l~~~~~~~~~-----------~gs~iiiT 288 (886)
.+++..+.. + +++-+|++|++.. ..+ .++....+.-..+ +=+-|=-|
T Consensus 90 -----------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 90 -----------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -----------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred -----------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 111111111 2 2455788899863 211 1211111100111 12234458
Q ss_pred cCChhhhhccCcc-c-eEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHh
Q 035887 289 TRLENVCGLMETQ-K-KFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAM 358 (886)
Q Consensus 289 tR~~~v~~~~~~~-~-~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 358 (886)
||..-+...+... . ..+++..+.+|-.++.++.+..-.. +--++.+.+|+++|.|-|--+.-+-+-+
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 8876665444432 2 3589999999999999988754331 1225679999999999997765444433
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=7.6e-06 Score=96.16 Aligned_cols=170 Identities=21% Similarity=0.268 Sum_probs=99.8
Q ss_pred CccccchhhHH---HHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035887 154 PTIVGLDSTFD---KVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 154 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
++++|.+..+. .+.+.+..++...+.++|++|+||||+|+.+++.. ...|. .+..+. ....+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d-------- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD-------- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH--------
Confidence 35789888774 56667777777788999999999999999999876 34442 111110 01111
Q ss_pred hCCCCCCCHHHHHHHHHHHh--ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEE--cCChh--h-hhccCcc
Q 035887 231 IGFLENRSLEEKASGIFKIL--SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFT--TRLEN--V-CGLMETQ 301 (886)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiT--tR~~~--v-~~~~~~~ 301 (886)
..+......+.+ .+++.+||+||++. ...++.+...+ ..|+.++|+ |.+.. + ....+..
T Consensus 93 --------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 93 --------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred --------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHhhccc
Confidence 111122222222 24678999999963 34444443222 335556653 44431 2 1122234
Q ss_pred ceEEccCCChHHHHHHHHHHhcCCc----CCCCCChHHHHHHHHHHcCCchhH
Q 035887 302 KKFKVECLGDNEAWELFLQKVGEET----LGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 302 ~~~~l~~L~~~e~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~glPla 350 (886)
..+.+++|+.++...++.+.+.... .....--.+....|++.+.|..-.
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 6799999999999999988764110 001111245567788888876543
No 79
>PRK05642 DNA replication initiation factor; Validated
Probab=98.31 E-value=1.2e-05 Score=82.19 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
...+.|+|..|+|||.|++.+++.. . ..-..++|++..+ +... ...+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~------~~~~----------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAE------LLDR----------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHH------HHhh----------------hHHHHHhhhhCC
Confidence 3678999999999999999999876 2 2234577886532 1110 012233333333
Q ss_pred EEEEEccccch---hhhhh-ccCCCCCCCCCCcEEEEEcCChhh---------hhccCccceEEccCCChHHHHHHHHHH
Q 035887 255 FLLLLDDIWER---VDLAK-LGVPFPAISKNASKIVFTTRLENV---------CGLMETQKKFKVECLGDNEAWELFLQK 321 (886)
Q Consensus 255 ~LlVlDdv~~~---~~~~~-l~~~~~~~~~~gs~iiiTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (886)
+||+||+... ..|.. +...+......|..+|+|++...- ...+.....+++++++.++-.+.++++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6788999632 33432 333332122356778888875331 222334467899999999999999976
Q ss_pred hcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 322 VGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
+......-+ +++..-|++.+.|..-.+..
T Consensus 179 a~~~~~~l~---~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 179 ASRRGLHLT---DEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 643221111 46677888888777655533
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.6e-05 Score=87.58 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=107.5
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCC------------------CCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPN------------------NFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~F~~~~wv~~ 214 (886)
++++|.+...+.|.+.+..++. +.+.++|++|+||||+|+.+.+....... .+..+..+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4689999988888888887766 46789999999999999999887511000 0111223333
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCC-
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRL- 291 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~- 291 (886)
+...+...+ ++|.+.... .-..+++-++|+|+++.. ...+.+...+. .......+|++|.+
T Consensus 94 a~~~gid~i-R~i~~~~~~--------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Ilattn~ 157 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY--------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVLATTNL 157 (472)
T ss_pred cccCCHHHH-HHHHHHHhh--------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEEEeCCh
Confidence 222222222 122211110 012345679999999743 33444433333 22233444444443
Q ss_pred hhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc-hhHHHHHHHH
Q 035887 292 ENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL-PLALITTGRA 357 (886)
Q Consensus 292 ~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~~ 357 (886)
..+.. .......+++.+++.++....+.+.+......- -.+....|++.++|. +.|+..+-.+
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33422 223456899999999999999888774332111 245567788888654 5666655543
No 81
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.3e-05 Score=88.26 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH--
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER-- 230 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-- 230 (886)
.+++|-+..+..|..++..++.. .+.++|+.|+||||+|+.+++... - ..... ...+.....-..+...+...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-c-e~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-C-ENPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-c-ccccC--ccccCCCcHHHHHHccCCccce
Confidence 36899999999999999887764 578999999999999999998761 1 11100 00010000111111100000
Q ss_pred -hCCCCCCCH---HHHHHHHHHH-hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEE-EcCChhhh-hccCcc
Q 035887 231 -IGFLENRSL---EEKASGIFKI-LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF-TTRLENVC-GLMETQ 301 (886)
Q Consensus 231 -l~~~~~~~~---~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii-TtR~~~v~-~~~~~~ 301 (886)
+........ .++.+.+... ..++.-++|+|++.. ...+..+...+- .......+|. ||....+. ......
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHHHhhh
Confidence 000001111 2222222211 235666999999974 445665544443 2223444444 44444442 223445
Q ss_pred ceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 302 KKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 302 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+.|.+.+++.++..+.+.+.+...... --.+....|++.++|.+.-+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHHHH
Confidence 679999999999999888876543311 12456788999999988544
No 82
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=9.2e-07 Score=69.26 Aligned_cols=56 Identities=32% Similarity=0.596 Sum_probs=29.0
Q ss_pred CCcEEEccCCCcccccCc-cccCccCCCEEeccCCCccccch-hhhccCCCcEeecccc
Q 035887 557 SLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETSIKELPH-ELKALTKLKCLNLEYT 613 (886)
Q Consensus 557 ~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~ 613 (886)
+|++|++++| .++.+|. .+..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 4555442 44455555555555555555543 2455555555555554
No 83
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.25 E-value=1.5e-06 Score=92.26 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=67.0
Q ss_pred HHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCC-CCCHH
Q 035887 165 KVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM--QLESVQEKIGERIGFLE-NRSLE 240 (886)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~-~~~~~ 240 (886)
++++.+.. +.-...+|+|++|+||||||+++|+.. .. .+|+.++||.+++.. ++.+++++|...+-... .....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 34455443 456778999999999999999999998 33 389999999999988 78888888863221111 11111
Q ss_pred HH------HHHHHHH--hccCcEEEEEccccc
Q 035887 241 EK------ASGIFKI--LSKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ~~------~~~l~~~--l~~k~~LlVlDdv~~ 264 (886)
.. +-...++ -.++.++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11 1111122 257999999999953
No 84
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=7.4e-06 Score=82.67 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=100.6
Q ss_pred CCccccc-hhhHHHHHHHHhcC---CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 153 EPTIVGL-DSTFDKVWRCLIQE---QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 153 ~~~~vGr-~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
++.++|. .+..-.....+.++ ....+.|+|..|+|||.|.+++++... ....-..++|++. .+....+.
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~-~~~~~~~v~y~~~------~~f~~~~~ 80 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQ-KQHPGKRVVYLSA------EEFIREFA 80 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHH-HHCTTS-EEEEEH------HHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHH-hccccccceeecH------HHHHHHHH
Confidence 3455675 33333344444332 345789999999999999999999872 2222335777753 44555555
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch---hhhh-hccCCCCCCCCCCcEEEEEcCChh---------hh
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER---VDLA-KLGVPFPAISKNASKIVFTTRLEN---------VC 295 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~-~l~~~~~~~~~~gs~iiiTtR~~~---------v~ 295 (886)
..+... .. ..+++.++ .-=+|++||++.. ..|. .+...+......|.+||+|++... +.
T Consensus 81 ~~~~~~---~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 81 DALRDG---EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HHHHTT---SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred HHHHcc---cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 444321 11 22334444 3448889999743 2232 222222212245778999996532 23
Q ss_pred hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 296 GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 296 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
..+...-.++++++++++-.+++.+.+...... --+++..-|++.+.+..-.+
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHH
Confidence 334556689999999999999999988543322 22556677777776555444
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.24 E-value=1.1e-05 Score=82.68 Aligned_cols=171 Identities=11% Similarity=0.062 Sum_probs=95.9
Q ss_pred ccccchhhHHH-HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 155 TIVGLDSTFDK-VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 155 ~~vGr~~~~~~-l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
.+.|.+..... +.++... .....+.|+|..|+|||+||+.+++... ..-....+++...... . +
T Consensus 20 f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~~~~~i~~~~~~~------~----~- 85 (227)
T PRK08903 20 FVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGRNARYLDAASPLL------A----F- 85 (227)
T ss_pred cccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEehHHhHH------H----H-
Confidence 34465444433 3333332 3456788999999999999999998762 1122345555432110 0 0
Q ss_pred CCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCc-EEEEEcCChhhhh--------ccCcc
Q 035887 233 FLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNAS-KIVFTTRLENVCG--------LMETQ 301 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs-~iiiTtR~~~v~~--------~~~~~ 301 (886)
... ...-+||+||+... .....+...+......+. .||+|++...... .+...
T Consensus 86 ---------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~ 149 (227)
T PRK08903 86 ---------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG 149 (227)
T ss_pred ---------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC
Confidence 111 23347889999643 222223222221112344 4667766533221 22224
Q ss_pred ceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHh
Q 035887 302 KKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAM 358 (886)
Q Consensus 302 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 358 (886)
..+++.++++++-..++.+.+...... --++....+++.+.|.+..+..+...+
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAAAERGLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 688999999988777777654322211 224567788888889888876655544
No 86
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.24 E-value=1.3e-05 Score=88.31 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=99.8
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
..+.|++..+++|.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~----~ 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVV----G 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecc----h
Confidence 4679999999999887642 124568899999999999999999987 3333 2221 1
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCC
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~g 282 (886)
..+..... + ........+.+.. ...+.+|++||++... .+..+...+.. ....+
T Consensus 190 ~~l~~~~~---g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 SELVRKYI---G-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHHhh---h-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 11111111 0 1111122222222 2467899999986421 11122111110 12346
Q ss_pred cEEEEEcCChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 283 SKIVFTTRLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 283 s~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
.+||.||..... .+...-...+.+...+.++..++|..++........-+ ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 678888875432 22112245789999999999999998875443222122 456777787764
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.5e-05 Score=87.38 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccC------------------CCCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDA------------------PNNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~F~~~~wv~~ 214 (886)
..++|-+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++..... ...|.-.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3579999999999999987655 457899999999999999998865110 011222333333
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEE-EcC
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF-TTR 290 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii-TtR 290 (886)
.....+.++ .++.+.+.. -..+++-++|+|++.. ...++.+...+. .....+.+|+ ||.
T Consensus 96 as~~gvd~i----------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL~Ttd 158 (546)
T PRK14957 96 ASRTGVEET----------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFILATTD 158 (546)
T ss_pred ccccCHHHH----------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEEEECC
Confidence 222222211 122222221 1235667999999974 344555544443 3334555554 554
Q ss_pred Chhhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHHH
Q 035887 291 LENVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITTG 355 (886)
Q Consensus 291 ~~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 355 (886)
...+. ...+....+++.+++.++....+.+.+..... .--.+....|++.++|.+- |+..+-
T Consensus 159 ~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 159 YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44443 22334578999999999988888876643321 1224556789999999664 444443
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.6e-05 Score=90.94 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC------------------CCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP------------------NNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 214 (886)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+...-.. +.|.-++.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 3689999999999999988765 4678999999999999999888641000 00111122222
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCC
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRL 291 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~ 291 (886)
+....+.. .+++++ .... -..+++-++|+|++... .....+...+. ......++|++|.+
T Consensus 96 As~~gVd~-IRelle---------------~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fILaTtd 158 (709)
T PRK08691 96 ASNTGIDN-IREVLE---------------NAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTD 158 (709)
T ss_pred cccCCHHH-HHHHHH---------------HHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEEEEeCC
Confidence 22222111 111111 1110 12356678999999743 22333333332 22334566666654
Q ss_pred h-hhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 292 E-NVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 292 ~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
. .+. ...+....+.+.+++.++....+.+.+...... --.+....|++.++|.+.-+..
T Consensus 159 ~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 159 PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred ccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHHH
Confidence 3 221 112334568899999999999998877544321 1245678899999998865533
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.9e-05 Score=85.63 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhcc---C---------------CCCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLD---A---------------PNNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---~---------------~~~F~~~~wv~~ 214 (886)
.++||-+..++.+.+.+..++.. .+.++|+.|+||||+|+.+.....- . ...+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999999998888877765 7889999999999999998874310 0 011222344444
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcC-C
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTR-L 291 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR-~ 291 (886)
+...++.++- +|++..... -+.+++=++|+|++.. ......+...+. .....+++|++|. .
T Consensus 93 as~~~vddIR-~Iie~~~~~--------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIlatte~ 156 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYL--------------PISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILATTEV 156 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhc--------------cccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEEeCCh
Confidence 3333333321 222221100 0234566899999964 334444444443 3334566665554 3
Q ss_pred hhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 292 ENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 292 ~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
..+.. .......+.+.+++.++....+.+.+...... --.+....|++.++|.+..+
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 44432 23345789999999999999998887544321 12455678999999887544
No 90
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.22 E-value=4.3e-05 Score=75.65 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=93.6
Q ss_pred HHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC-------------------CCCCeEEEEEeC-CCCCHHHH
Q 035887 165 KVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP-------------------NNFEVVIWVVVS-KDMQLESV 223 (886)
Q Consensus 165 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~s-~~~~~~~~ 223 (886)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+...... .+.+. .++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45666666666 5788999999999999999988762110 12222 222211 1112111
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCCh-hhhh-ccC
Q 035887 224 QEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLE-NVCG-LME 299 (886)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v~~-~~~ 299 (886)
.+++++.+... -..+.+-++|+||+.. ....+.+...+. .....+.+|++|++. .+.. ...
T Consensus 81 i~~i~~~~~~~--------------~~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 81 VRELVEFLSRT--------------PQESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHHccC--------------cccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChHHHHh
Confidence 11222222110 0124566899999864 334455544444 333456666666543 2221 122
Q ss_pred ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 300 TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 300 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
....+.+.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g--i---~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G--I---S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C--C---C---HHHHHHHHHHcCCCccc
Confidence 3468999999999998888776 1 1 1 35688999999998853
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=5.7e-05 Score=83.31 Aligned_cols=181 Identities=11% Similarity=0.149 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccC-C------------------CCCCeEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDA-P------------------NNFEVVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~F~~~~wv~ 213 (886)
..++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3579999999999999987665 467899999999999999988775110 0 12332 3333
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCC
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRL 291 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~ 291 (886)
.+...... -.+++.+.+... -..+++-++|+|++... .....+...+. .....+.+|++|.+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~--------------p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA--------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFILATTE 156 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC--------------cccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEEEeCC
Confidence 22111111 112222222110 02245558889998642 33444433333 33345666666655
Q ss_pred hh-hh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 292 EN-VC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 292 ~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
.. +. ........+++.+++.++....+...+....... -.+.+..+++.++|.|..+...
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHH
Confidence 43 22 2223346789999999999999988774332111 1466788999999998766443
No 92
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.21 E-value=7.2e-07 Score=99.97 Aligned_cols=126 Identities=29% Similarity=0.380 Sum_probs=104.9
Q ss_pred cchhhhhccccceEEcCCCCCCC--cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEec
Q 035887 510 EDRRKISLMRNKIVILSKPPACP--RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNL 587 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 587 (886)
+.+..+.+.++.+..++...... +|+.|++..|.+..+|.. ...++.|+.|++++| .+..+|...+.+.+|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence 56788888889888887765554 899999999988887633 788999999999999 89999988889999999999
Q ss_pred cCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCC
Q 035887 588 SETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 588 ~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
++|++..+|..+..+..|++|.+++|.. ..++.. +.++.++..|.+.++.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNK 243 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCce
Confidence 9999999999888888899999999853 344443 7788888888866554
No 93
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.20 E-value=2.4e-06 Score=84.55 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHHh---cCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 156 IVGLDSTFDKVWRCLI---QEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|+||+++++++...+. ....+.+.|+|++|+|||+|++.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2467899999999999999999999988
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=5.3e-05 Score=82.97 Aligned_cols=172 Identities=11% Similarity=0.079 Sum_probs=102.8
Q ss_pred CccccchhhHHHHHHHHhcCC----------ceEEEEEcCCCchhHHHHHHHHHhhccC------------------CCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQ----------VGIIGLHGMGGVGKTTLLTQINNKFLDA------------------PNN 205 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~ 205 (886)
++++|-+..++.|.+++..+. ...+.++|+.|+||||+|+.+.....-. ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 368999999999999998753 4568899999999999999988764100 011
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHh-----ccCcEEEEEccccc--hhhhhhccCCCCCC
Q 035887 206 FEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKIL-----SKKKFLLLLDDIWE--RVDLAKLGVPFPAI 278 (886)
Q Consensus 206 F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~ 278 (886)
.| +.++..... ....+++. .+.+.+ .+++-++++|+++. ......+...+. .
T Consensus 85 pD-~~~i~~~~~------------------~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE-e 143 (394)
T PRK07940 85 PD-VRVVAPEGL------------------SIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE-E 143 (394)
T ss_pred CC-EEEeccccc------------------cCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh-c
Confidence 11 112211100 11112211 122222 24555888899974 233333333333 2
Q ss_pred CCCCcEEEEEcCCh-hhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 279 SKNASKIVFTTRLE-NVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 279 ~~~gs~iiiTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
...+..+|++|.+. .+. ...+....+.+.+++.++..+.+.+..+. ..+.+..++..++|.|..+..+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 33456666666553 333 22234578999999999999888754321 1345788999999999766443
No 95
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=2.7e-05 Score=87.34 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=112.5
Q ss_pred CCccccchhh--HHHHHHHHhcC--CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 153 EPTIVGLDST--FDKVWRCLIQE--QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 153 ~~~~vGr~~~--~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
++.++|.... ......+.... ...-+.|+|..|+|||+|++.+.+.. .....-..+++++. .++...+.
T Consensus 115 dnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~~------~~f~~~~~ 187 (450)
T PRK14087 115 ENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMSG------DEFARKAV 187 (450)
T ss_pred hcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEH------HHHHHHHH
Confidence 4456776432 22222333222 23568899999999999999999965 22222235566643 45666666
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch----hhhhhccCCCCCCCCCCcEEEEEcCCh---------hhh
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER----VDLAKLGVPFPAISKNASKIVFTTRLE---------NVC 295 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~~~~~~~~gs~iiiTtR~~---------~v~ 295 (886)
..++.. ......+++.++ +.-+||+||+... ...+.+...+......|..||+|+... .+.
T Consensus 188 ~~l~~~-----~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 188 DILQKT-----HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHHHHh-----hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 665421 112233444443 3448889999632 222333333321223455788886643 223
Q ss_pred hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 296 GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 296 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
..+...-.+.+++++.++-.+++.+++...... ..--++...-|++.++|.|-.+.-+.
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 334456678999999999999999988543211 12236778899999999998775443
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=4.4e-05 Score=86.62 Aligned_cols=180 Identities=13% Similarity=0.179 Sum_probs=105.4
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCC--------------------CCCeEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPN--------------------NFEVVIWV 212 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------------------~F~~~~wv 212 (886)
..++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+.+... -.. +.+ ++++
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~~~~~~~Cg~C~sCr~i~~~~h~D-iieI 93 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLNPKDGDCCNSCSVCESINTNQSVD-IVEL 93 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHcCCCCc-eEEe
Confidence 4689999999999999987654 4688999999999999999988762 111 111 1222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEc
Q 035887 213 VVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI-LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTT 289 (886)
Q Consensus 213 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTt 289 (886)
..+....+.++ +.+. ..+... ..+++=++|+|+++. ...+..+...+. .......+|++|
T Consensus 94 daas~igVd~I-ReIi---------------~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~T 156 (605)
T PRK05896 94 DAASNNGVDEI-RNII---------------DNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFAT 156 (605)
T ss_pred ccccccCHHHH-HHHH---------------HHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEEC
Confidence 21111111111 1111 111110 123344699999974 344444444333 223345555544
Q ss_pred -CChhhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHHH
Q 035887 290 -RLENVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITTG 355 (886)
Q Consensus 290 -R~~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 355 (886)
....+. ........+++.+++.++....+...+......- -.+.+..+++.++|.+. |+..+-
T Consensus 157 t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred CChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 433442 2233456899999999999998888774332111 14457889999999765 444333
No 97
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=7.2e-05 Score=81.26 Aligned_cols=187 Identities=11% Similarity=0.098 Sum_probs=108.9
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC-CCCC------eEEEEEeCCCCCHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP-NNFE------VVIWVVVSKDMQLESVQE 225 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~------~~~wv~~s~~~~~~~~~~ 225 (886)
..++|.++.++.+.+.+..++.+ .+.++|+.|+||||+|..+.....-.. .... ...-++ ... ...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c---~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDH---PVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCC---hHHH
Confidence 46899999999999999887754 688999999999999998887662110 0000 000000 000 0111
Q ss_pred HHHHHhCCCC-----------------CCCHHHHHHHHHHHhc-----cCcEEEEEccccc--hhhhhhccCCCCCCCCC
Q 035887 226 KIGERIGFLE-----------------NRSLEEKASGIFKILS-----KKKFLLLLDDIWE--RVDLAKLGVPFPAISKN 281 (886)
Q Consensus 226 ~i~~~l~~~~-----------------~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~ 281 (886)
.|. .-..++ ....++ +..+.+.+. +++-++|+||++. ......+...+. ....
T Consensus 94 ~i~-~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~ 170 (365)
T PRK07471 94 RIA-AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPA 170 (365)
T ss_pred HHH-ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCC
Confidence 111 000000 111222 222333332 4667899999973 344444443333 3334
Q ss_pred CcEEEEEcCChh-hh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 282 ASKIVFTTRLEN-VC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 282 gs~iiiTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
++.+|++|.+.+ +. ...+....+.+.+++.++..+++.+...... ......+++.++|.|..+..+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 566666666653 32 2223456899999999999999987642211 1222678999999998775543
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3.6e-05 Score=88.62 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH--
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER-- 230 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-- 230 (886)
.++||-+..++.|.+.+..+++. .+.++|+.|+||||+|+.+.+...- ...+. +..++.....+.|...
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 46899999999999999887664 4679999999999999999887621 00000 0011111111111100
Q ss_pred -----hCCCCCCCHHHH---HHHHHH-HhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCC-hhhh-hc
Q 035887 231 -----IGFLENRSLEEK---ASGIFK-ILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRL-ENVC-GL 297 (886)
Q Consensus 231 -----l~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~-~~v~-~~ 297 (886)
+........++. .+.+.. -..+++-++|+|+++. ......+...+- ......++|++|.+ ..+. ..
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchHH
Confidence 000000111221 111111 1245667999999974 344444433333 22334555554444 4442 22
Q ss_pred cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 298 METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 298 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
.+....|.+.+++.++....+.+.+..... ..-......|++.++|.+..+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 334578999999999999999887643221 112455678999999988755433
No 99
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=2.5e-07 Score=91.84 Aligned_cols=106 Identities=24% Similarity=0.278 Sum_probs=77.9
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEe
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCL 608 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L 608 (886)
..+..|.+|++++|.++.+..+ ..-.+.+|+|++|.| .+...- ++..|++|+.|||++|.+.++--.-.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3456788888888877766554 566788888888888 665554 3677888888888888877775555677788888
Q ss_pred eccccccccccccccccCCCCCCEEEeccCCC
Q 035887 609 NLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 609 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
.|.+|. ++.+.. +++|=+|..|++.+|.+
T Consensus 358 ~La~N~-iE~LSG--L~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 358 KLAQNK-IETLSG--LRKLYSLVNLDLSSNQI 386 (490)
T ss_pred ehhhhh-Hhhhhh--hHhhhhheeccccccch
Confidence 888875 566654 67777888888877654
No 100
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.2e-05 Score=87.16 Aligned_cols=192 Identities=14% Similarity=0.179 Sum_probs=107.4
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC-CCCCeEEEEEeCCCCCHHHHHHHHHHH-
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP-NNFEVVIWVVVSKDMQLESVQEKIGER- 230 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~- 230 (886)
+++||-+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+...-.. ......-. ..++.....+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 3679999999999999988766 5668999999999999999977651000 00000000 011111111111000
Q ss_pred ------hCCCCCCCHHHHHHHHHHH----hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEc-CChhhh-h
Q 035887 231 ------IGFLENRSLEEKASGIFKI----LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTT-RLENVC-G 296 (886)
Q Consensus 231 ------l~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTt-R~~~v~-~ 296 (886)
+........++..+.+... ..++.-++|+|+++. ...+..+...+. ......++|++| ....+. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhhHH
Confidence 0000011122222211110 123445889999974 344555544443 333445565554 434442 2
Q ss_pred ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 297 LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 297 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
..+....+++++++.++....+.+.+....... -.+....|++.++|.+.-+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 234457899999999999999988775433211 245678899999998755533
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.9e-05 Score=84.34 Aligned_cols=192 Identities=11% Similarity=0.110 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE-eCCCCCHHHHHHHHHHHh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV-VSKDMQLESVQEKIGERI 231 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 231 (886)
.+++|.+..++.|.+++..++++ .+.++|+.|+||||+|+.+.+... -........|.. +...++....-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999999887665 488999999999999999988762 111010000000 000111111111111100
Q ss_pred -------CCCCCCCHHHHHHHHHHHh-----ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEc-CChhhhh
Q 035887 232 -------GFLENRSLEEKASGIFKIL-----SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTT-RLENVCG 296 (886)
Q Consensus 232 -------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTt-R~~~v~~ 296 (886)
........+++.+ +.+.+ .+.+-++|+|++.. ...+..+...+. .....+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHH
Confidence 0000111222222 22222 34556889999974 345555544444 334456665555 4344432
Q ss_pred c-cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 297 L-METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 297 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
. ......+++.+++.++....+...+..... .--.+.+..|++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 1 223457899999999998888887643221 112456889999999977544
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5.9e-05 Score=85.69 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccC------------------CCCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDA------------------PNNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~F~~~~wv~~ 214 (886)
.++||-+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+...-. .+.|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 36899999999999999887665 57899999999999999998866110 011112333333
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCC-
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRL- 291 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~- 291 (886)
+....+.++ +++++.+.. .-..++.-++|+|+++. ......+...+. .....+++|++|.+
T Consensus 96 as~~~v~~i-R~l~~~~~~--------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIlattd~ 159 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPY--------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFILATTDH 159 (509)
T ss_pred cccCCHHHH-HHHHHHHhh--------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEEEECCh
Confidence 222222222 122222111 01124556889999974 334444433333 23345666665543
Q ss_pred hhhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 292 ENVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 292 ~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
..+. ...+....+++.+++.++....+.+.+...... --.+....|++.++|.+.-+.
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 160 HKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHH
Confidence 3332 222334678999999999888777766433211 123456788999999886553
No 103
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00013 Score=78.74 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=110.1
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC-CCCCeEEEEEeCCCCCHHHHHHHHHHH-
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP-NNFEVVIWVVVSKDMQLESVQEKIGER- 230 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~- 230 (886)
..++|-++....+...+..++. ..+.|+|+.|+||||+|..+........ ..+... .....++.....+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4689999999999999988765 4688999999999999999988762100 001111 001111111122222211
Q ss_pred ------hCCC---------CCCCHHHHHHHHHHHhc-----cCcEEEEEccccc--hhhhhhccCCCCCCCCCCcE-EEE
Q 035887 231 ------IGFL---------ENRSLEEKASGIFKILS-----KKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASK-IVF 287 (886)
Q Consensus 231 ------l~~~---------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~-iii 287 (886)
+..+ .....++.. .+.+++. +++-++|+|+++. ......+...+. ....... |++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE-Epp~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE-EPPARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh-cCCCCceEEEE
Confidence 1000 011223322 3444433 4667899999974 333333433333 2223344 455
Q ss_pred EcCChhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 288 TTRLENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 288 TtR~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
|++...+.. ..+....+++.+++.++...++.+...... --.+....+++.++|.|..+..+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544433321 122346899999999999999987432111 113456789999999998775443
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00015 Score=80.23 Aligned_cols=179 Identities=11% Similarity=0.157 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccC-----CCCCCe-EEEEEeCCCCCHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDA-----PNNFEV-VIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~F~~-~~wv~~s~~~~~~~~~~~ 226 (886)
.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|.. ++-+......+...+ .+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 3579999999999999987665 488899999999999999998765210 111221 111111111111111 12
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEc-CChhhh-hccCccc
Q 035887 227 IGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTT-RLENVC-GLMETQK 302 (886)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTt-R~~~v~-~~~~~~~ 302 (886)
+++++... -..+++-++++|++... ..+..+...+. .....+.+|++| ....+. ...+...
T Consensus 96 l~~~~~~~--------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 96 LIDQVRIP--------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTILSRCQ 160 (367)
T ss_pred HHHHHhhc--------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHHhcce
Confidence 22211100 01245558999998642 33444433332 223344555554 333332 2223345
Q ss_pred eEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 303 KFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 303 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
.++..+++.++....+...+......- -.+....+++.++|.+-.+
T Consensus 161 ~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 161 IFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred eEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 789999999999998888775433211 1456788888999866543
No 105
>PRK06620 hypothetical protein; Validated
Probab=98.05 E-value=4.9e-05 Score=76.31 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=89.8
Q ss_pred CCccccc-hh-hHHHHHHHHhcC--Cc--eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 035887 153 EPTIVGL-DS-TFDKVWRCLIQE--QV--GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 153 ~~~~vGr-~~-~~~~l~~~L~~~--~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (886)
++.++|. .. ....+.++-... +. +.+.|+|++|+|||+|++.+++.. .. .++. ..+.
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~------- 78 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF------- 78 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh-------
Confidence 4567776 33 333344433221 12 568999999999999999987765 11 1211 0000
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhh-------hhccC
Q 035887 227 IGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENV-------CGLME 299 (886)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v-------~~~~~ 299 (886)
. + +.. +..-++++||+....+ ..+...+......|..||+|++...- ...+.
T Consensus 79 -----------~-~-------~~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~ 137 (214)
T PRK06620 79 -----------N-E-------EIL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIK 137 (214)
T ss_pred -----------c-h-------hHH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHh
Confidence 0 0 011 2335788999963221 11211111122456789999885332 23334
Q ss_pred ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 300 TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 300 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
..-.++++++++++-..++++.+....... -+++..-|++.+.|.--.+
T Consensus 138 ~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l---~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 138 SVLSILLNSPDDELIKILIFKHFSISSVTI---SRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCceEeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHH
Confidence 455899999999998888888775322111 2566777777777655444
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00013 Score=84.26 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCCCCCC--eEEEEEeCCCCCHHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAPNNFE--VVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
.+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+... -..... ...+- .++...--+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccc----cCcccHHHHHHhcC
Confidence 46899999999999999887654 688999999999999999988761 110000 00000 00000111111111
Q ss_pred hCC-------CCCCCHHHHH---HHHHH-HhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEc-CChhhhh
Q 035887 231 IGF-------LENRSLEEKA---SGIFK-ILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTT-RLENVCG 296 (886)
Q Consensus 231 l~~-------~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTt-R~~~v~~ 296 (886)
-.. ......+++. +.++. -+.+++-++|+|++.. ......+...+. .....+.+|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhhH
Confidence 000 0011122221 11111 0223455789999964 233444444443 333456665544 4444322
Q ss_pred c-cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 297 L-METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 297 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
. .+....+.+.+++.++....+.+.+....... -.+....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2 23446899999999999999988775433111 135678899999998866543
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.03 E-value=5.8e-05 Score=83.36 Aligned_cols=171 Identities=17% Similarity=0.211 Sum_probs=97.8
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
+.+.|++..++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4678999999999887642 234668899999999999999999886 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccchh------------h----hhhccCCCCC-CCCCC
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWERV------------D----LAKLGVPFPA-ISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~-~~~~g 282 (886)
..+... .. ... ......+.+.. ...+.+|++||++... . +..+...+.. ....+
T Consensus 199 ~~l~~~----~~---g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 199 SELVQK----FI---GEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHHhHh----hc---cch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 111111 10 011 12222222222 3467899999997421 1 1111111110 12235
Q ss_pred cEEEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 283 SKIVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 283 s~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
..||.||........ . .-+..+.+++.+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 667777776443211 1 1235789999999999999998875433222223 355667776654
No 108
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.03 E-value=0.00042 Score=71.40 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=115.9
Q ss_pred HHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC----CeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 035887 163 FDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF----EVVIWVVVSKDMQLESVQEKIGERIGFLE 235 (886)
Q Consensus 163 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 235 (886)
++++.+++.. ...+-+.|||.+|.|||++++++...+. ....- -.++.|......+...+...|+.+++.+.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 3444444443 3456789999999999999999998772 21111 25788888899999999999999999876
Q ss_pred --CCCHHHHHHHHHHHhcc-CcEEEEEccccch---------hhhhhccCCCCCCCCCCcEEEEEcCChhhhhcc-----
Q 035887 236 --NRSLEEKASGIFKILSK-KKFLLLLDDIWER---------VDLAKLGVPFPAISKNASKIVFTTRLENVCGLM----- 298 (886)
Q Consensus 236 --~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---------~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~----- 298 (886)
..+...+...+.+.++. +-=+||+|++.+. ..+..++ .+. ..-.-+-|.+-|+...-+-..
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~-NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLG-NELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHh-hccCCCeEEeccHHHHHHhccCHHHH
Confidence 44555666666677765 4458999999762 1111111 111 122345566666653322111
Q ss_pred CccceEEccCCChHHH-HHHHHHHhc--CCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 299 ETQKKFKVECLGDNEA-WELFLQKVG--EETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 299 ~~~~~~~l~~L~~~e~-~~lf~~~~~--~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
....++.+.....++- ..|+..... .-.....-...++++.|...++|+.--+.
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1235667777765544 444433221 11112223447789999999999875553
No 109
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.02 E-value=3.7e-05 Score=77.61 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEV-VIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
.+++|-+..+..+.+.+.....++...+|++|.|||+-|..+.... --.+-|.+ ++=.++|...+..-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-----
Confidence 4679999999999999988788999999999999999999988876 33345544 3445666554433111111
Q ss_pred CCCCCCHHHHHHHHHHHhc--cCc-EEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCC-hhhhhc-cCccceEE
Q 035887 233 FLENRSLEEKASGIFKILS--KKK-FLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRL-ENVCGL-METQKKFK 305 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~--~k~-~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~-~~v~~~-~~~~~~~~ 305 (886)
.+...+......... .++ =.+|||+++. .+.|..+...+. .....++.|..|.. ..+... ......|+
T Consensus 110 ----k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 110 ----KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred ----cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 111111111110000 134 3778999985 467887766655 34455665554443 333222 12345789
Q ss_pred ccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 306 VECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 306 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
.++|.+++...-++..+..+....+ .+.-+.|++.++|.-.-+
T Consensus 185 Fk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~A 227 (346)
T KOG0989|consen 185 FKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRA 227 (346)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHH
Confidence 9999999999988888865543322 455788999998864433
No 110
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.0004 Score=74.28 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=119.1
Q ss_pred CCccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
+..++||+.+++.+.+|+.. ...+-+.|.|.+|.|||.+...++.+.. ....--.++++.+..-....+++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~-~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS-KSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh-hhcccceeEEEeeccccchHHHHHHHH
Confidence 45689999999999999875 4678899999999999999999999872 111112567787766667788888888
Q ss_pred HHh--CCCCCCCHHHHHHHHHHHhccC--cEEEEEccccchh--hhhhccCCCCCCCCCCcEEEEEcC--Chhhh-----
Q 035887 229 ERI--GFLENRSLEEKASGIFKILSKK--KFLLLLDDIWERV--DLAKLGVPFPAISKNASKIVFTTR--LENVC----- 295 (886)
Q Consensus 229 ~~l--~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~iiiTtR--~~~v~----- 295 (886)
..+ ......+..+....+.+...+. .+|+|+|..+... .-..+...|.+.--.++|+|+.-- .-+..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 777 2221223355556666666553 5899999987432 111222222212334566554322 11111
Q ss_pred hc----cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCC
Q 035887 296 GL----METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCG 346 (886)
Q Consensus 296 ~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 346 (886)
+. .-....+..+|.+.++-.++|..+..... ....+....+-++++|.|
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAA 360 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhcc
Confidence 11 11235788899999999999999885433 112223344445555543
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00012 Score=83.74 Aligned_cols=184 Identities=13% Similarity=0.151 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCC-ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC-------------------eEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQ-VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE-------------------VVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-------------------~~~wv~ 213 (886)
.+++|-+..++.|.+.+..++ ...+.++|+.|+||||+|+.+.+... -....+ -++++.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 367999998899999888765 46788899999999999999988762 110000 022222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcC
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTR 290 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR 290 (886)
.+....+.++ ..+.+.+.. -..+++-++|+|++.. ......+...+. .......+|++|.
T Consensus 95 ~a~~~~Id~i----------------R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt 157 (624)
T PRK14959 95 GASNRGIDDA----------------KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATT 157 (624)
T ss_pred cccccCHHHH----------------HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecC
Confidence 2111111111 111111110 1235667899999974 344455544443 2223455555554
Q ss_pred C-hhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch-hHHHHHHHHh
Q 035887 291 L-ENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP-LALITTGRAM 358 (886)
Q Consensus 291 ~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 358 (886)
. ..+.. .......+++.+++.++....+...+...... --.+..+.|++.++|.+ .|+..+..++
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 44432 22334678999999999999888876543211 12456788999999965 5666666544
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00011 Score=84.10 Aligned_cols=179 Identities=13% Similarity=0.168 Sum_probs=105.2
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC------------------CCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP------------------NNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 214 (886)
.+++|-+..++.+.+++..++.. .+.++|+.|+||||+|+.+.....-.. +.|.-++++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 46899999999999999887664 567999999999999999987751000 01112223322
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCC-
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRL- 291 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~- 291 (886)
+....+.. .+++++.+.. .-..+++-++|+|+++.. .....+...+. .....+.+|++|.+
T Consensus 96 ~~~~~vd~-ir~l~~~~~~--------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL~t~d~ 159 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQY--------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTDP 159 (527)
T ss_pred cccCCHHH-HHHHHHHHhh--------------CcccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEEEeCCh
Confidence 21111111 1122221110 011355668999999743 33444433333 23345556655544
Q ss_pred hhhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 292 ENVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 292 ~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
..+. ...+....+++.+++.++....+.+.+..... ..-.+....|++.++|.+--+
T Consensus 160 ~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 160 QKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred hhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 3332 11223467899999999999888877643321 112455688999999987543
No 113
>CHL00181 cbbX CbbX; Provisional
Probab=98.00 E-value=0.00015 Score=76.25 Aligned_cols=154 Identities=11% Similarity=0.098 Sum_probs=83.5
Q ss_pred ccccchhhHHHHHHHHh--------c-------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 155 TIVGLDSTFDKVWRCLI--------Q-------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~--------~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
.++|.+..+++|.++.. . .....+.++|++|+||||+|+.+++.. ...+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH---
Confidence 46887777766554431 0 122347899999999999999998865 2112212222454441
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch-----------hhhhhccCCCCCCCCCCcEEEEE
Q 035887 220 LESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER-----------VDLAKLGVPFPAISKNASKIVFT 288 (886)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~gs~iiiT 288 (886)
.++. ...-+. ........+.+ . ..-+|++|++... +....+...+. ......+||.+
T Consensus 100 -~~l~----~~~~g~---~~~~~~~~l~~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~vI~a 167 (287)
T CHL00181 100 -DDLV----GQYIGH---TAPKTKEVLKK-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLVVIFA 167 (287)
T ss_pred -HHHH----HHHhcc---chHHHHHHHHH-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEe
Confidence 2222 222111 11111112222 1 2348999998631 12223333332 33345667777
Q ss_pred cCChhhhhcc--------CccceEEccCCChHHHHHHHHHHhcC
Q 035887 289 TRLENVCGLM--------ETQKKFKVECLGDNEAWELFLQKVGE 324 (886)
Q Consensus 289 tR~~~v~~~~--------~~~~~~~l~~L~~~e~~~lf~~~~~~ 324 (886)
+........+ .-...+.+++++.+|..+++...+..
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 7654432111 12357899999999999999888754
No 114
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=1.5e-05 Score=84.11 Aligned_cols=291 Identities=19% Similarity=0.201 Sum_probs=183.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcc
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF-EVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSK 252 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 252 (886)
..+-+.++|.|||||||++-.+.. . ...| +.+.++....-.+...+.-.+...++... .+.+.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-QPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-ccchHHHHHHHHHHhh
Confidence 457899999999999999999988 4 3345 56778888777788888887777777663 3334455567778889
Q ss_pred CcEEEEEccccchhh-hhhccCCCCCCCCCCcEEEEEcCChhhhhccCccceEEccCCChH-HHHHHHHHHhcCCc--CC
Q 035887 253 KKFLLLLDDIWERVD-LAKLGVPFPAISKNASKIVFTTRLENVCGLMETQKKFKVECLGDN-EAWELFLQKVGEET--LG 328 (886)
Q Consensus 253 k~~LlVlDdv~~~~~-~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~--~~ 328 (886)
+|.++|+||..+..+ -..+...+. .+...-.|+.|+|..-. ........+.+|+.. ++.++|...+.... ..
T Consensus 88 rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 999999999865422 111111111 23334567788886432 234566778888865 78999887763211 11
Q ss_pred CCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHH----HHHHhhcccCCCCChhhhhhhHHhhhcCCCcchH
Q 035887 329 SHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYA----IEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVL 404 (886)
Q Consensus 329 ~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~----~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 404 (886)
-...-.....+|.++.+|.|++|.-.++..++- ...+--+. ...+........--+......+.+||.-|.. -.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we 241 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WE 241 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HH
Confidence 223345678899999999999998888877763 22222111 1112111111111123577889999999988 78
Q ss_pred HHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhhHHHHHHHHhcccccC---Cc-eEEeehhHHHHHHH
Q 035887 405 RFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGYYIIGVLVQACLLEVG---SD-YVKMHDVIRDMALW 480 (886)
Q Consensus 405 k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~---~~-~~~mHdlv~d~a~~ 480 (886)
+.-|--++.|...+... ...|.+.|-... .....+...+..+++++++... +. .++.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 88899999998776554 233444332210 0112333346677888887653 33 66666666666665
Q ss_pred HHhh
Q 035887 481 IACE 484 (886)
Q Consensus 481 i~~~ 484 (886)
+-.+
T Consensus 313 eL~r 316 (414)
T COG3903 313 ELHR 316 (414)
T ss_pred HHHh
Confidence 5544
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.98 E-value=1.7e-05 Score=84.92 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCC-CCCHH---HH----
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD--MQLESVQEKIGERIGFLE-NRSLE---EK---- 242 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~-~~~~~---~~---- 242 (886)
+.-..++|+|++|.|||||++.+++.. . ..+|+..+|+.+.+. .++.++++.+...+-... ..... .+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 456789999999999999999999987 3 348999999999876 789999999954332221 11111 11
Q ss_pred HHHHHHH-hccCcEEEEEccccc
Q 035887 243 ASGIFKI-LSKKKFLLLLDDIWE 264 (886)
Q Consensus 243 ~~~l~~~-l~~k~~LlVlDdv~~ 264 (886)
.+..... -++++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 1111121 357999999999963
No 116
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.98 E-value=8.2e-05 Score=77.77 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=79.6
Q ss_pred ccccchhhHHHHHHHHhc---------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 155 TIVGLDSTFDKVWRCLIQ---------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
.++|.+..+++|.+.... ....-+.++|++|+||||+|+.+++.... ...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHH--
Confidence 478988777666543211 13456789999999999999999886511 111111123333221
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch----------hhhhhccCCCCCCCCCCcEEEEEc
Q 035887 220 LESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER----------VDLAKLGVPFPAISKNASKIVFTT 289 (886)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~~gs~iiiTt 289 (886)
++... .- ..........+... ..-+|++|++... ...+.+...+. .......+|+++
T Consensus 84 --~l~~~----~~---g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~vila~ 150 (261)
T TIGR02881 84 --DLVGE----YI---GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVLILAG 150 (261)
T ss_pred --Hhhhh----hc---cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEEEecC
Confidence 11111 10 11111112222211 2348899999641 22333322222 222233455555
Q ss_pred CChhhh-------hccCc-cceEEccCCChHHHHHHHHHHhcC
Q 035887 290 RLENVC-------GLMET-QKKFKVECLGDNEAWELFLQKVGE 324 (886)
Q Consensus 290 R~~~v~-------~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~ 324 (886)
...+.. ..... ...+.+++++.+|..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 443321 11111 346899999999999999888754
No 117
>PF14516 AAA_35: AAA-like domain
Probab=97.98 E-value=0.00071 Score=73.09 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=119.1
Q ss_pred CCccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-----CCHHHHHHH-
Q 035887 153 EPTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-----MQLESVQEK- 226 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~- 226 (886)
.+..|.|...-+++.+.|.+. -..+.|.|+-.+|||||...+.+.. +. .. ..++++++... .+....++.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~-~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QG-YRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CC-CEEEEEEeecCCCcccCCHHHHHHHH
Confidence 345688986777777777652 4688999999999999999999887 22 23 34567776542 245544444
Q ss_pred ---HHHHhCCCC---------CCCHHHHHHHHHHHh-c--cCcEEEEEccccchh--------------hhhhccCCCCC
Q 035887 227 ---IGERIGFLE---------NRSLEEKASGIFKIL-S--KKKFLLLLDDIWERV--------------DLAKLGVPFPA 277 (886)
Q Consensus 227 ---i~~~l~~~~---------~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~--------------~~~~l~~~~~~ 277 (886)
|.++++... ..........+.+.+ . +++.+|++|+++... .|..-....+
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~- 164 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP- 164 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc-
Confidence 445554432 112223333444432 2 589999999997421 1211111111
Q ss_pred CCCCCcEEEEEcCChhh---hh----ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 278 ISKNASKIVFTTRLENV---CG----LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 278 ~~~~gs~iiiTtR~~~v---~~----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
.-.+-.+|...+.+. .. .+.....++|++++.+|...|..++-..-. ....+.|...+||+|.-
T Consensus 165 --~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 165 --IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred --ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHH
Confidence 011112222222111 11 122245789999999999999887643211 22388999999999999
Q ss_pred HHHHHHHhcCC
Q 035887 351 LITTGRAMSGK 361 (886)
Q Consensus 351 i~~~~~~l~~~ 361 (886)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999999763
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00022 Score=82.36 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=105.7
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE-eCCCCCHHHHHHHHHHHh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV-VSKDMQLESVQEKIGERI 231 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 231 (886)
.+++|-+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+... -....+.-.|.. +...++.....+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 46899999999999999877664 588999999999999999888762 111110000110 001111111111111100
Q ss_pred -------CCCCCCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEE-EcCChhhhh-
Q 035887 232 -------GFLENRSLEEKASGIFKI----LSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVF-TTRLENVCG- 296 (886)
Q Consensus 232 -------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iii-TtR~~~v~~- 296 (886)
........+++.+.+... ..+.+-++|+|+++.. ...+.+...+. .....+.+|+ |++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhHH
Confidence 000011123332221111 2345557899998643 33444444443 2233455554 444444432
Q ss_pred ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 297 LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 297 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
.......+++.+++.++....+.+.+...... --.+.+..|++.++|..--
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMRD 224 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHH
Confidence 23446789999999999888888766432211 1245678899999996553
No 119
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00023 Score=81.64 Aligned_cols=184 Identities=14% Similarity=0.139 Sum_probs=108.8
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC---------------------CCCCeEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP---------------------NNFEVVIW 211 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~~F~~~~w 211 (886)
.+++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+...-.. .+. -++.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~-dvie 91 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI-DVVE 91 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc-eEEE
Confidence 46899999999999999887665 468999999999999999988752000 001 1222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEE-
Q 035887 212 VVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI-LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF- 287 (886)
Q Consensus 212 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii- 287 (886)
+..+...++..+ .++.+.+... ..+++-++|+|++.. ......+...+. .......+|+
T Consensus 92 idaas~~gvd~i----------------Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~ 154 (584)
T PRK14952 92 LDAASHGGVDDT----------------RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFA 154 (584)
T ss_pred eccccccCHHHH----------------HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEE
Confidence 222111111111 1111111111 234556889999973 344444444443 2333455554
Q ss_pred EcCChhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHHHHHh
Q 035887 288 TTRLENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITTGRAM 358 (886)
Q Consensus 288 TtR~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l 358 (886)
||....+.. ..+....+++.+++.++..+.+.+.+....... -.+....|++.++|.+- |+..+-.++
T Consensus 155 tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred eCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 544444432 233457899999999999988887765433111 13456788999999775 444444443
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00024 Score=80.25 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC-CC----------------CC-eEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP-NN----------------FE-VVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~----------------F~-~~~wv~~ 214 (886)
..++|-+..++.+...+..++.. ++.++|+.|+||||+|+.+.+...... .. +. -++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 36899999999999999887665 568999999999999998887651100 00 10 1222222
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEE
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI----LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFT 288 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiT 288 (886)
+....+ +++.+.+... ..+++-++|+|++.. ......+...+- .....+++|++
T Consensus 94 as~~gI-------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~FIL~ 153 (535)
T PRK08451 94 ASNRGI-------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKFILA 153 (535)
T ss_pred ccccCH-------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEEEEE
Confidence 111112 2222222110 114556889999974 333444433333 23345666666
Q ss_pred cCCh-hhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 289 TRLE-NVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 289 tR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
|.+. .+. ........+++.+++.++....+.+.+...... --.+.+..|++.++|.+.-+..+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 6553 221 122335689999999999999888776543311 12456789999999988655443
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00023 Score=82.77 Aligned_cols=178 Identities=11% Similarity=0.166 Sum_probs=108.9
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhc--------------------cCCCCCCeEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFL--------------------DAPNNFEVVIWV 212 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~--------------------~~~~~F~~~~wv 212 (886)
.+++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+..... ....+|+ +..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEe
Confidence 36899999999999999887664 578999999999999998887651 0112343 2233
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEE-Ec
Q 035887 213 VVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF-TT 289 (886)
Q Consensus 213 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii-Tt 289 (886)
..+......++. ++++++... -+.+++=++|+|++.. ...+..+...+. .....+.+|+ ||
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~--------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifIL~tt 159 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP--------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFILATT 159 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC--------------cccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEEEEeC
Confidence 333222222222 222222111 0123455889999874 344555544443 3334555555 54
Q ss_pred CChhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 290 RLENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 290 R~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+...+.. .......+++.+++.++....+.+.+....... -.+.+..|++.++|..--+
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 5444432 234457899999999999999988775433211 1346788999999976544
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.96 E-value=0.00018 Score=80.60 Aligned_cols=159 Identities=23% Similarity=0.184 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
...+.|+|+.|+|||+|++.+++.. .....-..++++++ .++...+...+... ..+ .+.+.+++ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---~~~----~~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSS------EKFTNDFVNALRNN---KME----EFKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEH------HHHHHHHHHHHHcC---CHH----HHHHHHHh-C
Confidence 3568899999999999999999987 22211235667753 33444455444321 222 23333333 3
Q ss_pred EEEEEccccchh----hhhhccCCCCCCCCCCcEEEEEcCCh-h--------hhhccCccceEEccCCChHHHHHHHHHH
Q 035887 255 FLLLLDDIWERV----DLAKLGVPFPAISKNASKIVFTTRLE-N--------VCGLMETQKKFKVECLGDNEAWELFLQK 321 (886)
Q Consensus 255 ~LlVlDdv~~~~----~~~~l~~~~~~~~~~gs~iiiTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (886)
-+||+||+.... ..+.+...+......+..+|+|+... . +...+.....+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 488899997421 11222222211112355678877642 1 2222333457899999999999999998
Q ss_pred hcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 322 VGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+......- -+++...|++.+.|..-.+
T Consensus 281 ~~~~~~~l---~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 281 AEEEGLEL---PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHcCCCC---CHHHHHHHHHhcCCCHHHH
Confidence 86433222 2566788888888876544
No 123
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.95 E-value=0.00017 Score=76.03 Aligned_cols=154 Identities=10% Similarity=0.080 Sum_probs=82.7
Q ss_pred ccccchhhHHHHHHHHh---c-------C-----CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 155 TIVGLDSTFDKVWRCLI---Q-------E-----QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---~-------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
.++|.+..+++|.++.. - + ...-+.++|++|+||||+|+.++... ..........++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH---
Confidence 46787777766655322 1 0 11257899999999999998887765 2122222223444442
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch-----------hhhhhccCCCCCCCCCCcEEEEE
Q 035887 220 LESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER-----------VDLAKLGVPFPAISKNASKIVFT 288 (886)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~gs~iiiT 288 (886)
.++ +..+.+. +.......+.+ . ..-+|++|++... ..+..+...+. ....+-+||.+
T Consensus 99 -~~l----~~~~~g~---~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a 166 (284)
T TIGR02880 99 -DDL----VGQYIGH---TAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILA 166 (284)
T ss_pred -HHH----hHhhccc---chHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEe
Confidence 122 2222111 11111122222 1 3468899998621 12233333333 33345566666
Q ss_pred cCChhhhhcc--------CccceEEccCCChHHHHHHHHHHhcC
Q 035887 289 TRLENVCGLM--------ETQKKFKVECLGDNEAWELFLQKVGE 324 (886)
Q Consensus 289 tR~~~v~~~~--------~~~~~~~l~~L~~~e~~~lf~~~~~~ 324 (886)
+......... .-...+++++++.+|-..++...+..
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 6543221111 11357899999999999999887744
No 124
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1e-05 Score=57.93 Aligned_cols=34 Identities=41% Similarity=0.612 Sum_probs=16.7
Q ss_pred CCCEEeccCCCccccchhhhccCCCcEeeccccc
Q 035887 581 SLQYLNLSETSIKELPHELKALTKLKCLNLEYTR 614 (886)
Q Consensus 581 ~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~ 614 (886)
+|++|++++|+|+++|..+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555445555555555555553
No 125
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00026 Score=84.51 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=106.2
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC---------------------CCCCeEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP---------------------NNFEVVIW 211 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~~F~~~~w 211 (886)
.++||.+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+...-.. .+++ +++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEE
Confidence 36899999999999999887664 578999999999999999988762100 0111 122
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEE
Q 035887 212 VVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIF-KILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFT 288 (886)
Q Consensus 212 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiT 288 (886)
+.......+.++ .++.+.+. .-..++.-++|||+++. ......|...+. .....+.+|++
T Consensus 94 idaas~~~Vd~i----------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fIl~ 156 (824)
T PRK07764 94 IDAASHGGVDDA----------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFIFA 156 (824)
T ss_pred ecccccCCHHHH----------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEEEE
Confidence 222111111111 11111111 11234555788999974 344455544443 33345555555
Q ss_pred c-CChhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 289 T-RLENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 289 t-R~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
| ....+.. .....+.|++..++.++...++.+.+...... .-.+....|++.++|.+..+
T Consensus 157 tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 157 TTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 5 4444432 23345789999999999998888776433211 12345678999999988443
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=9.3e-05 Score=89.43 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=98.1
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccC--CC-CCCeEEE-EEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDA--PN-NFEVVIW-VVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~F~~~~w-v~~s~~~~~~~~~~~i~~ 229 (886)
..++||+.++.++++.|......-+.++|++|+||||+|+.+..+.... .. -.+..+| +..+.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a---------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA---------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc----------
Confidence 3579999999999999987666677799999999999999999876211 11 1123333 32221000
Q ss_pred HhCCCCCCCHHHHHHHHHHHh--ccCcEEEEEccccchh---------hhhhccCCCCCCCCCCcEEEEEcCChhhh---
Q 035887 230 RIGFLENRSLEEKASGIFKIL--SKKKFLLLLDDIWERV---------DLAKLGVPFPAISKNASKIVFTTRLENVC--- 295 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~gs~iiiTtR~~~v~--- 295 (886)
+.......++....+.+.+ .+++.+|++|++.... +...+..+.. ....-++|-||...+..
T Consensus 257 --g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 257 --GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEYKKYF 332 (852)
T ss_pred --ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHHhhhh
Confidence 0000001111111122212 2478999999986431 1111222221 22234566666653321
Q ss_pred ----hccCccceEEccCCChHHHHHHHHHHhcCCcC-CCCCChHHHHHHHHHHcCCc
Q 035887 296 ----GLMETQKKFKVECLGDNEAWELFLQKVGEETL-GSHPDIPELAKTVAKECCGL 347 (886)
Q Consensus 296 ----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~gl 347 (886)
......+.+.+++++.+++.+++......-.. ..-.-..+....+++.+.+.
T Consensus 333 ~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 333 EKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 12234468999999999999997554421110 01111234456666666554
No 127
>PLN03150 hypothetical protein; Provisional
Probab=97.92 E-value=1.5e-05 Score=93.85 Aligned_cols=88 Identities=30% Similarity=0.488 Sum_probs=76.6
Q ss_pred CCcEEEccCCCcccccCccccCccCCCEEeccCCCcc-ccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEe
Q 035887 557 SLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIK-ELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRM 635 (886)
Q Consensus 557 ~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 635 (886)
.+..|+|+++.....+|..+++|.+|++|+|++|.+. .+|..++.|++|+.|+|++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999444588999999999999999999997 89999999999999999999866678876 899999999999
Q ss_pred ccCCCccccc
Q 035887 636 LDCGYSRKIA 645 (886)
Q Consensus 636 ~~~~~~~~~~ 645 (886)
.+|...+.+|
T Consensus 498 s~N~l~g~iP 507 (623)
T PLN03150 498 NGNSLSGRVP 507 (623)
T ss_pred cCCcccccCC
Confidence 9988765443
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00049 Score=77.31 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=104.4
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccC--------------------CCCCCeEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDA--------------------PNNFEVVIWV 212 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~~F~~~~wv 212 (886)
.+++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+.+..... ..+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987765 567899999999999999998875210 00122 1122
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcC
Q 035887 213 VVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTR 290 (886)
Q Consensus 213 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR 290 (886)
.........++. ++.+.+. ..-..+.+-++|+|++... ...+.+...+. .......+|++|.
T Consensus 96 ~g~~~~gid~ir-~i~~~l~--------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~Il~t~ 159 (451)
T PRK06305 96 DGASHRGIEDIR-QINETVL--------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKFFLATT 159 (451)
T ss_pred eccccCCHHHHH-HHHHHHH--------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceEEEEeC
Confidence 211111111111 1111110 0012256678899998632 33444433333 2233556666554
Q ss_pred C-hhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 291 L-ENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 291 ~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
. ..+.. .......+++.++++++....+.+.+...... --.+.+..|++.++|.+--+
T Consensus 160 ~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 160 EIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLRDA 219 (451)
T ss_pred ChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 3 33322 22345679999999999998888776433211 12456788999999976433
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.3e-05 Score=57.36 Aligned_cols=41 Identities=37% Similarity=0.599 Sum_probs=35.1
Q ss_pred CCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccch
Q 035887 556 PSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPH 597 (886)
Q Consensus 556 ~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~ 597 (886)
++|++|++++| .++.+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999 899999889999999999999999988763
No 130
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.90 E-value=0.00021 Score=80.94 Aligned_cols=181 Identities=18% Similarity=0.140 Sum_probs=103.9
Q ss_pred CCccccchhh--HHHHHHHHhcC--CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 153 EPTIVGLDST--FDKVWRCLIQE--QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 153 ~~~~vGr~~~--~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
++.++|.... ...+..+.... ...-+.|+|+.|+|||+|++.+++.. .....-..+++++.. .+...+.
T Consensus 122 d~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~------~~~~~~~ 194 (450)
T PRK00149 122 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSE------KFTNDFV 194 (450)
T ss_pred cccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHH------HHHHHHH
Confidence 3445675432 23333333321 23568999999999999999999987 222112346677543 3334444
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch---h-hhhhccCCCCCCCCCCcEEEEEcCChh---------hh
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER---V-DLAKLGVPFPAISKNASKIVFTTRLEN---------VC 295 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~-~~~~l~~~~~~~~~~gs~iiiTtR~~~---------v~ 295 (886)
..+... .. ..+.+.++ +.-+||+||+... . ..+.+...+......|..||+|+.... +.
T Consensus 195 ~~~~~~---~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 195 NALRNN---TM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HHHHcC---cH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 444221 12 22333333 3448999999632 1 112222222111123456788776431 22
Q ss_pred hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 296 GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 296 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
..+.....+++++++.++-..++.+.+...... --+++..-|++.+.|..-.+
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~---l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGID---LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHcCcCCCHHHH
Confidence 334445689999999999999999988543211 22567888888888876654
No 131
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=5.9e-05 Score=82.21 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=71.9
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
+++++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++.++..++...+.-. +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 3578889999999998875 3577789999999999999999987 445678899999999988877665432100 00
Q ss_pred CCCCCHHHHHHHHHHHhc--cCcEEEEEccccc
Q 035887 234 LENRSLEEKASGIFKILS--KKKFLLLLDDIWE 264 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~ 264 (886)
.......-..+.+....+ ++++++|+|++..
T Consensus 251 gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 251 GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 000000011111222222 4789999999963
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00011 Score=82.42 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=105.4
Q ss_pred CCccccchhhH--HHHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC-CeEEEEEeCCCCCHHHHHHHHH
Q 035887 153 EPTIVGLDSTF--DKVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF-EVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 153 ~~~~vGr~~~~--~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
++.++|-.... ....++... +...-+.|+|+.|+|||+|++.+++.. . ..+. ..++|++. .++..++.
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~~------~~f~~~~~ 176 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEEH------HHHHHHHH
Confidence 34456754322 233333332 224468999999999999999999987 2 2222 35677764 34555665
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch---hhh-hhccCCCCCCCCCCcEEEEEcC-Chhh--------h
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER---VDL-AKLGVPFPAISKNASKIVFTTR-LENV--------C 295 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~-~~l~~~~~~~~~~gs~iiiTtR-~~~v--------~ 295 (886)
..+... ..+ .+++.+..+.-+|++||+... ..+ +.+...+......|..||+||. ...- .
T Consensus 177 ~~~~~~---~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~ 249 (440)
T PRK14088 177 DSMKEG---KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_pred HHHhcc---cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh
Confidence 555321 222 233334445668999999732 111 2222222111223457888875 3221 2
Q ss_pred hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 296 GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 296 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
..+.....+.+++.+.+.-.+++++.+......- -.++..-|++.+.|..-.+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCHHHH
Confidence 2233455789999999999999998885432222 2566888888888765444
No 133
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00031 Score=78.60 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
..-+.|+|+.|+|||+|++.+++... .....+++++. ..+...+...+... . ...+++.++ +.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~~---~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRSG---E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhcc---h----HHHHHHHcc-cC
Confidence 35688999999999999999999872 22344566653 33444555554321 1 122333333 34
Q ss_pred EEEEEccccchh----hhhhccCCCCCCCCCCcEEEEEcCCh---------hhhhccCccceEEccCCChHHHHHHHHHH
Q 035887 255 FLLLLDDIWERV----DLAKLGVPFPAISKNASKIVFTTRLE---------NVCGLMETQKKFKVECLGDNEAWELFLQK 321 (886)
Q Consensus 255 ~LlVlDdv~~~~----~~~~l~~~~~~~~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (886)
-+|++||+.... ..+.+...+......|..||+||... .+...+.....+.+.+++.++-..++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 588889986421 11222222211112355788888542 12333444568899999999999999988
Q ss_pred hcCCcCCCCCChHHHHHHHHHHcCCc
Q 035887 322 VGEETLGSHPDIPELAKTVAKECCGL 347 (886)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~c~gl 347 (886)
+......- -+++..-|+..+.|.
T Consensus 284 ~~~~~~~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALSIRI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHcCCCC---CHHHHHHHHHhcCCC
Confidence 85432111 144555566666544
No 134
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=5.3e-05 Score=81.63 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=51.6
Q ss_pred hcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC-CccccchhhhccCCCcEeeccccccccccccccccCCCCC
Q 035887 552 FDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET-SIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGL 630 (886)
Q Consensus 552 ~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 630 (886)
+..+++++.|++++| .++.+|. + ..+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-------cc
Confidence 345688889999988 8888882 2 346888888886 6777876553 5788888888865666664 35
Q ss_pred CEEEec
Q 035887 631 EVLRML 636 (886)
Q Consensus 631 ~~L~l~ 636 (886)
++|.+.
T Consensus 115 e~L~L~ 120 (426)
T PRK15386 115 RSLEIK 120 (426)
T ss_pred ceEEeC
Confidence 666654
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00044 Score=80.32 Aligned_cols=177 Identities=14% Similarity=0.184 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCC----------------CCCeEEEEEeCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPN----------------NFEVVIWVVVSK 216 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~F~~~~wv~~s~ 216 (886)
..++|.+..++.+.+++..+++ ..+.++|+.|+||||+|+.++....-... +++ ++++....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaas 96 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAAS 96 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccc
Confidence 3579999999999999988765 45679999999999999999876511000 000 11111110
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEE-EEcCCh
Q 035887 217 DMQLESVQEKIGERIGFLENRSLEEKASGIFKI-LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIV-FTTRLE 292 (886)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~ii-iTtR~~ 292 (886)
...+.. ..++.+.+... ..+++-++|+|++.. ...+..+...+- .......+| +||+..
T Consensus 97 n~~vd~----------------IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~ 159 (725)
T PRK07133 97 NNGVDE----------------IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVH 159 (725)
T ss_pred cCCHHH----------------HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChh
Confidence 011111 11122221111 235666899999963 344554443333 222344444 455444
Q ss_pred hhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 293 NVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 293 ~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
.+.. .......+++.+++.++....+...+...... --.+.+..|++.++|.+.-+
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 4432 23445689999999999998888766433211 11345788999999976544
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.00038 Score=79.23 Aligned_cols=159 Identities=18% Similarity=0.121 Sum_probs=95.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
...+.|+|..|+|||.|++.+++.. .....-..++|++. .++..++...+... . ...+++.++. -
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yita------eef~~el~~al~~~---~----~~~f~~~y~~-~ 378 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVSS------EEFTNEFINSIRDG---K----GDSFRRRYRE-M 378 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeH------HHHHHHHHHHHHhc---c----HHHHHHHhhc-C
Confidence 3458999999999999999999987 21112235667754 33444444433211 1 1223333333 3
Q ss_pred EEEEEccccch---hhh-hhccCCCCCCCCCCcEEEEEcCCh---------hhhhccCccceEEccCCChHHHHHHHHHH
Q 035887 255 FLLLLDDIWER---VDL-AKLGVPFPAISKNASKIVFTTRLE---------NVCGLMETQKKFKVECLGDNEAWELFLQK 321 (886)
Q Consensus 255 ~LlVlDdv~~~---~~~-~~l~~~~~~~~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (886)
=+|+|||+... ..| +.+...+......|..|||||... .+...+...-.+.+++.+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 47889999632 222 222222221223456688888752 23344555678999999999999999998
Q ss_pred hcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 322 VGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+.......+ +++..-|++.+.+..-.+
T Consensus 459 a~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 459 AVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 854432222 566777777776654433
No 137
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=4.7e-06 Score=85.22 Aligned_cols=163 Identities=21% Similarity=0.188 Sum_probs=84.3
Q ss_pred CCCCcceeeeecCccccc----cChhhhcCCCCCcEEEccCC---CcccccCcc-------ccCccCCCEEeccCCCcc-
Q 035887 529 PACPRLLTLFLGINRLDT----ISSDFFDFMPSLKVLNLSKN---RSLSQLPSG-------VSKLVSLQYLNLSETSIK- 593 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~----~~~~~~~~l~~Lr~L~Ls~~---~~i~~lp~~-------i~~L~~L~~L~L~~~~i~- 593 (886)
..+..+..+++++|.+.. .....+.+-+.|+.-++|+- +....+|+. +-.+++|++||||.|-+-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 345667777788774421 11222455667777777764 011233332 223457888888877443
Q ss_pred ----ccchhhhccCCCcEeeccccccccccccc-------------cccCCCCCCEEEeccCCCcccccccccccCCccc
Q 035887 594 ----ELPHELKALTKLKCLNLEYTRYLQKIPRQ-------------LLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEI 656 (886)
Q Consensus 594 ----~LP~~i~~L~~L~~L~l~~~~~l~~lp~~-------------~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 656 (886)
.+-.-+.+++.|++|+|.+|. +...-.+ .++.-++|+++....|..-.. +-..
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---------ga~~ 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---------GATA 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---------cHHH
Confidence 222335667788888887774 2221111 134456677777666543220 1222
Q ss_pred hHHHhcCCcCCceEEEEeccchh--hhhhhcccccccccceEEEeec
Q 035887 657 LVEELITLEHLNVLSVTLKSFGA--LQRLLSCQQLHSSTRALELRRC 701 (886)
Q Consensus 657 ~~~~l~~L~~L~~L~~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~ 701 (886)
....++..+.|+.+.+..+.+.. ...+......+++|+.|+|.++
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 34445666666666666554421 2222233334445555555544
No 138
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00056 Score=79.81 Aligned_cols=188 Identities=12% Similarity=0.155 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
.+++|-+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+.. ....... ....++.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999999887665 456899999999999999998876 1100000 0001111122222221111
Q ss_pred CC-------CCCCHHHHHHHHHHHh-----ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCC-hhhhh-
Q 035887 233 FL-------ENRSLEEKASGIFKIL-----SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRL-ENVCG- 296 (886)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~-~~v~~- 296 (886)
.. .....++..+ +.+.+ .+++-++|+|++.. ....+.+...+. .....+.+|++|.+ ..+..
T Consensus 89 ~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHH
Confidence 00 0111222211 11211 24566899999863 344454543343 22345566665543 33322
Q ss_pred ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 297 LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 297 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
.......+.+..++.++....+...+....... -.+....|++.++|.+..+..
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 223346788999999999988888775433111 245678999999998865543
No 139
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00066 Score=76.79 Aligned_cols=180 Identities=11% Similarity=0.128 Sum_probs=103.8
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhcc--CC----------------CCCCeEEEEEe
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLD--AP----------------NNFEVVIWVVV 214 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--~~----------------~~F~~~~wv~~ 214 (886)
..++|-+..++.+.+++..++.+ .+.++|+.|+||||+|+.+...... .. +.|.-++++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 35799999999999999876654 5678999999999999998876510 00 01111222322
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEE-cC
Q 035887 215 SKDMQLESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFT-TR 290 (886)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiT-tR 290 (886)
+.......+ .++.+.+.. -..+++-++|+|+++. ......+...+. .......+|++ |+
T Consensus 96 as~~gvd~i----------------r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v~Il~tt~ 158 (486)
T PRK14953 96 ASNRGIDDI----------------RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTIFILCTTE 158 (486)
T ss_pred ccCCCHHHH----------------HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEECC
Confidence 111111111 111111111 1234566999999973 233444433333 22234445544 44
Q ss_pred Chhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 291 LENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 291 ~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
...+.. .......+.+.+++.++....+.+.+...... --.+....|++.++|.+..+..
T Consensus 159 ~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 159 YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 333322 22334678999999999998888876433211 1235567888999997765533
No 140
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=5.7e-06 Score=82.49 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=25.5
Q ss_pred CCCCCccEEEeccCCccccCc-------ccccCCCCcEEEEe
Q 035887 746 YGFNSLQRVTIACCSRLREVT-------WLVFAPNLKIVHIE 780 (886)
Q Consensus 746 ~~~~~L~~L~L~~c~~l~~l~-------~l~~l~~L~~L~L~ 780 (886)
..|+.|+.|.+.+++.+..+. .++.+++++.|+=+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 368888888888887776543 25678888888644
No 141
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0007 Score=78.81 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.++.... ....+.. ....++.....+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 3579999999999999987654 6778999999999999999998862 1111100 0011111122222211111
Q ss_pred CC-------CCCCHHHHHHHHHHH----hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCC-hhhh-hc
Q 035887 233 FL-------ENRSLEEKASGIFKI----LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRL-ENVC-GL 297 (886)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~-~~v~-~~ 297 (886)
.. .....++..+.+... ..+++-++|+|+++. ...+..+...+. .......+|++|.+ ..+. ..
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHHH
Confidence 00 011122222211111 124556889999974 344555544443 22234455544443 3332 22
Q ss_pred cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 298 METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 298 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
......+++..++.++....+...+....... -.+....|++.++|.+..+...
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 23346788899999998888877665432111 1355788999999987655433
No 142
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=2.5e-06 Score=95.74 Aligned_cols=127 Identities=30% Similarity=0.396 Sum_probs=95.7
Q ss_pred ccchhhhhccccceEE-cCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEec
Q 035887 509 WEDRRKISLMRNKIVI-LSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNL 587 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 587 (886)
+..+..+++..|.+.. ......+++|..|++.+|.+..+... +..|++|++|++++| .|+.+. .+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 3455556666666655 33357788999999999988776553 567889999999999 888776 5777888999999
Q ss_pred cCCCccccchhhhccCCCcEeecccccccccccc-ccccCCCCCCEEEeccCCCc
Q 035887 588 SETSIKELPHELKALTKLKCLNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 588 ~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 641 (886)
++|.|+.++ .+..+.+|+.+++++|. +..++. . ...+.+|+.+.+.++...
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 999888874 46668999999999986 455554 2 367788888888877653
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00078 Score=77.47 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=106.7
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC-------------------CCCCeEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP-------------------NNFEVVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~ 213 (886)
..++|-+..++.+..++..++.+ .+.++|+.|+||||+|+.+.+...-.. .+++ ++++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~id 94 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEID 94 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEec
Confidence 36899999999999999886654 578999999999999999988762100 0122 11221
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHH---HH-HhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEE
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGI---FK-ILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF 287 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii 287 (886)
.... ...++..+.. .. -..+++-++|+|++.. ...+..+...+. .......+|.
T Consensus 95 gas~-------------------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~ 154 (563)
T PRK06647 95 GASN-------------------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIF 154 (563)
T ss_pred Cccc-------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEE
Confidence 1111 1122222111 11 1235666899999964 344555544444 3334556665
Q ss_pred EcCC-hhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 288 TTRL-ENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 288 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
+|.. ..+.. .......+++.+++.++....+.+.+...... --.+.+..|++.++|.+..+.
T Consensus 155 ~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred ecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 5543 33322 22334678999999999988888876433211 224567789999999886543
No 144
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.80 E-value=0.00017 Score=79.72 Aligned_cols=171 Identities=16% Similarity=0.135 Sum_probs=96.5
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.+.|.+..+++|.+.+.- ....-+.++|++|.|||++|+.+++.. ...|- .+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi---~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFL---RVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEE---EEecch-----
Confidence 568899988888877641 134568899999999999999999986 33442 222111
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCCcE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~gs~ 284 (886)
+.. ... ......+...+.....+.+.+|+||+++... .+..+...+.. ....+.+
T Consensus 253 -L~~----k~~---Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 253 -LIQ----KYL---GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred -hhh----hhc---chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 111 111 1111112222222234578899999985311 01111111110 1233567
Q ss_pred EEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 285 IVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 285 iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
||.||...+.... . .-+..+.+...+.++..++|..+..........++ ..++..+.|+-
T Consensus 325 VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 325 VIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred EEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 8888876554322 1 22457899999999999999987754432222333 44555665543
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=9.1e-07 Score=97.99 Aligned_cols=128 Identities=28% Similarity=0.411 Sum_probs=98.2
Q ss_pred ccccchhhhhccccceEEcCCC-CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccC-ccCCCE
Q 035887 507 RKWEDRRKISLMRNKIVILSKP-PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSK-LVSLQY 584 (886)
Q Consensus 507 ~~~~~~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~-L~~L~~ 584 (886)
..|.++...++..|.+..+... .-++.|+.|+|+.|.+.++. ++..+++|+.|||++| .+..+|. ++. -.+|+.
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~-l~~~gc~L~~ 236 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQ-LSMVGCKLQL 236 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccc-cchhhhhhee
Confidence 4577888888888877655443 34678999999999887765 5888999999999999 7887773 221 124999
Q ss_pred EeccCCCccccchhhhccCCCcEeeccccccc--cccccccccCCCCCCEEEeccCCCc
Q 035887 585 LNLSETSIKELPHELKALTKLKCLNLEYTRYL--QKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 585 L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l--~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
|+|++|.+++| .+|.+|.+|+.||+++|-.. .++.. ++.|..|+.|.+.+|+..
T Consensus 237 L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccc
Confidence 99999999998 68999999999999988421 22333 677888999999888764
No 146
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=4.4e-05 Score=82.18 Aligned_cols=61 Identities=16% Similarity=0.325 Sum_probs=34.0
Q ss_pred CCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC-Cccccch
Q 035887 531 CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET-SIKELPH 597 (886)
Q Consensus 531 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~LP~ 597 (886)
|.+++.|++++|.++.+|. + ..+|+.|.+++|..++.+|..+. .+|++|++++| .+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 4555666666665555551 1 23466666666555555665442 45666666665 5555654
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00018 Score=77.89 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=84.5
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...++.+. .....+...+.+...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4679999999999999987654 566679999999999999998875 222 23444443 222211111111000
Q ss_pred CCCCCCHHHHHHHHHHHhccCcEEEEEccccch---hhhhhccCCCCCCCCCCcEEEEEcCChhh--hhccCccceEEcc
Q 035887 233 FLENRSLEEKASGIFKILSKKKFLLLLDDIWER---VDLAKLGVPFPAISKNASKIVFTTRLENV--CGLMETQKKFKVE 307 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~~gs~iiiTtR~~~v--~~~~~~~~~~~l~ 307 (886)
. ..+.+.+-++|+||+... .....+...+. ....++++|+||....- ....+....+.++
T Consensus 94 ------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~ 158 (316)
T PHA02544 94 ------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRVIDFG 158 (316)
T ss_pred ------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceEEEeC
Confidence 0 001234567899999743 22222322222 33456788888875431 1111223467777
Q ss_pred CCChHHHHHHHHH
Q 035887 308 CLGDNEAWELFLQ 320 (886)
Q Consensus 308 ~L~~~e~~~lf~~ 320 (886)
..+.++..+++..
T Consensus 159 ~p~~~~~~~il~~ 171 (316)
T PHA02544 159 VPTKEEQIEMMKQ 171 (316)
T ss_pred CCCHHHHHHHHHH
Confidence 7888887766544
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.75 E-value=0.00068 Score=74.57 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
..+.|.+..+++|.+.+.- ...+-|.++|++|.|||++|+.+++.. ...|- .+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi---~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFI---RVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEE---EEeh------
Confidence 3578999888888776641 135678899999999999999999876 33331 2211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCCc
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNAS 283 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~gs 283 (886)
..+... .. ......+.+.+.......+.+|++|+++... .+..+...+.. ....+.
T Consensus 213 s~l~~k----~~---ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 213 SEFVQK----YL---GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHHHHH----hc---chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 111111 11 1111222222223334578999999976310 01111111110 123456
Q ss_pred EEEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh
Q 035887 284 KIVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL 349 (886)
Q Consensus 284 ~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 349 (886)
.||.||...+.... . .-+..+.+...+.++...+|..+.........-+ ...+++.+.|.--
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sg 352 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISA 352 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCH
Confidence 78888876543221 1 2245689999999998888887765433222223 3455666766543
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00021 Score=85.80 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=88.8
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccC--CCCC-CeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDA--PNNF-EVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.++||+++++++++.|......-+.++|++|+|||++|+.++.+.... ...+ +..+|. + +...+.. ..
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a----~~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA----GT 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh----hc
Confidence 579999999999999987666667799999999999999999886211 1111 333432 1 1111111 00
Q ss_pred CCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccchh----------hhhhccCCCCCCCCCC-cEEEEEcCChhh-----
Q 035887 232 GFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWERV----------DLAKLGVPFPAISKNA-SKIVFTTRLENV----- 294 (886)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~g-s~iiiTtR~~~v----- 294 (886)
....+.++....+.+.+ +.++.+|++|++.... +...+..+. ...| -++|-+|...+.
T Consensus 254 --~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~---l~~g~i~~IgaTt~~e~~~~~~ 328 (731)
T TIGR02639 254 --KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA---LSSGKLRCIGSTTYEEYKNHFE 328 (731)
T ss_pred --cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH---HhCCCeEEEEecCHHHHHHHhh
Confidence 00112223333333333 2468999999997321 112222221 1223 344555553221
Q ss_pred --hhccCccceEEccCCChHHHHHHHHHHh
Q 035887 295 --CGLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 295 --~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
.........+.+++++.++..+++....
T Consensus 329 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 329 KDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1111234679999999999999998765
No 150
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=3.4e-06 Score=84.06 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=27.2
Q ss_pred cccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccC
Q 035887 691 SSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACC 759 (886)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c 759 (886)
++|..|+|++|-.+..-.+..+.+++.|++|.++.|..+- +... ......|.|.+|++.||
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~~-----~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PETL-----LELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHHe-----eeeccCcceEEEEeccc
Confidence 3445555555433332212234445555666665554431 1110 11123456666666665
No 151
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.0067 Score=61.08 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=100.9
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
.+++|-++.++++-=++.. +.+--+.++|++|.||||||.-+.+.. .+ .+. ++.........-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE----ecccccccChhhHHHHH
Confidence 3689999988888766653 456789999999999999999999987 22 221 11111111111111222
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch-----h----hhhhccCCCCCCCCCCcE-----------EEEE
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER-----V----DLAKLGVPFPAISKNASK-----------IVFT 288 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~----~~~~l~~~~~~~~~~gs~-----------iiiT 288 (886)
..+ + ..=++++|.+... + ..+++..-..-..+.++| |=-|
T Consensus 99 t~L-------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 99 TNL-------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred hcC-------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 211 1 2335556766521 1 112211111001122233 3348
Q ss_pred cCChhhhhccCc--cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 289 TRLENVCGLMET--QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 289 tR~~~v~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
||...+...+.. ..+.+++..+.+|-.+...+.+..-..... ++-+.+|+++..|-|--+.-+-
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHH
Confidence 887665444332 246789999999999999998853332222 4568999999999997654333
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.66 E-value=0.00032 Score=85.33 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=88.5
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhcc--CCCCC-CeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLD--APNNF-EVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.++||+++++++++.|......-+.++|++|+|||++|+.++.+... +.... +..+|. + +...++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a------ 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA------ 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc------
Confidence 57999999999999998765556679999999999999999887621 11111 234442 1 2222111
Q ss_pred CCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccchh---------hhhhccCCCCCCCCCCcEEEEEcCChhhhh-----
Q 035887 232 GFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWERV---------DLAKLGVPFPAISKNASKIVFTTRLENVCG----- 296 (886)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~----- 296 (886)
+.....+.++....+.+.+ ..++.+|++|++.... +...+..+.. ....-++|.+|...+...
T Consensus 249 g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 249 GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHHHHhcC
Confidence 1111112233333333322 3468999999996321 1112222211 122345566666544311
Q ss_pred --ccCccceEEccCCChHHHHHHHHHH
Q 035887 297 --LMETQKKFKVECLGDNEAWELFLQK 321 (886)
Q Consensus 297 --~~~~~~~~~l~~L~~~e~~~lf~~~ 321 (886)
.......+.+...+.++...++...
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1223457889999999988887654
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.66 E-value=0.0006 Score=76.65 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=88.9
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCC---CCCCeEEEEEeCCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAP---NNFEVVIWVVVSKD 217 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~ 217 (886)
..+.|.+..++++.+.+.- ...+-+.++|++|.|||++|+.+++.. ... ..+....|+.++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch
Confidence 3467899999988887642 134568899999999999999999987 211 01223445554332
Q ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccchh---------h-----hhhccCCCCCC-CCC
Q 035887 218 MQLESVQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWERV---------D-----LAKLGVPFPAI-SKN 281 (886)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~-----~~~l~~~~~~~-~~~ 281 (886)
.++ .............+.+..++.. .+++++|++|+++... + ...+...+... ...
T Consensus 261 ----eLl----~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 261 ----ELL----NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred ----hhc----ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC
Confidence 111 1110000001111112222211 2478999999997321 1 11222222201 112
Q ss_pred CcEEEEEcCChhhhh--cc---CccceEEccCCChHHHHHHHHHHhcC
Q 035887 282 ASKIVFTTRLENVCG--LM---ETQKKFKVECLGDNEAWELFLQKVGE 324 (886)
Q Consensus 282 gs~iiiTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 324 (886)
+..||.||...+... .. .-+..|+++..+.++..++|+.+...
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 344555665544321 11 22456899999999999999998743
No 154
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00051 Score=75.89 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=84.4
Q ss_pred chhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCC
Q 035887 159 LDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLENR 237 (886)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 237 (886)
|..-..++.+.+..... ++.|.|+-++||||+++.+.... ... .+++..-+.. +...+ .+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~d~---------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-LDL---------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-HHH----------
Confidence 33445555555544333 99999999999999997777665 122 5555533221 11111 111
Q ss_pred CHHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhh-----h-ccCccceEEccCCCh
Q 035887 238 SLEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVC-----G-LMETQKKFKVECLGD 311 (886)
Q Consensus 238 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~-----~-~~~~~~~~~l~~L~~ 311 (886)
...+...-..++..++||.|....+|+.....+. +.+.. +|+||+-+.... . ..+....+.+.|||.
T Consensus 84 -----~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 84 -----LRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -----HHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 1111111112778999999999999988766665 44444 899998876542 1 123456789999999
Q ss_pred HHHHHHH
Q 035887 312 NEAWELF 318 (886)
Q Consensus 312 ~e~~~lf 318 (886)
.|...+-
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9987653
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.65 E-value=0.0004 Score=84.34 Aligned_cols=154 Identities=18% Similarity=0.256 Sum_probs=87.6
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccC--CCC-CC-eEEEEEeCCCCCHHHHHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDA--PNN-FE-VVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-F~-~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
.++||+.++.++++.|......-+.++|++|+||||+|+.+....... ... .. .++++..+. +..
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a----- 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA----- 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh-----
Confidence 579999999999999987666677799999999999999999886210 001 12 233333221 110
Q ss_pred hCCCCCCCHHHHHHHHHHHh--ccCcEEEEEccccchh---------hhhhccCCCCCCCCCCcEEEEEcCChhhh----
Q 035887 231 IGFLENRSLEEKASGIFKIL--SKKKFLLLLDDIWERV---------DLAKLGVPFPAISKNASKIVFTTRLENVC---- 295 (886)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~gs~iiiTtR~~~v~---- 295 (886)
+.......++....+.+.+ .+++.+|++|++.... +...+..+.. ....-++|-+|...+..
T Consensus 248 -g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r~~~~ 324 (857)
T PRK10865 248 -GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQYIE 324 (857)
T ss_pred -ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHHHHhh
Confidence 0000111222222222222 2478999999996431 1222222322 12234555555554421
Q ss_pred ---hccCccceEEccCCChHHHHHHHHHHh
Q 035887 296 ---GLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 296 ---~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
......+.+.+...+.++..+++....
T Consensus 325 ~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 325 KDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 112233467787779999999886654
No 156
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0018 Score=74.82 Aligned_cols=186 Identities=12% Similarity=0.102 Sum_probs=103.0
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+..... -...-+ ...++.....+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 4689999999999999987654 4567899999999999999987651 111000 000111111111111000
Q ss_pred -------CCCCCCHHH---HHHHHHHH-hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEE-EcCChhhhh-c
Q 035887 233 -------FLENRSLEE---KASGIFKI-LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF-TTRLENVCG-L 297 (886)
Q Consensus 233 -------~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii-TtR~~~v~~-~ 297 (886)
.......++ +.+.+... ..+++-++|+|++.. ...+..+...+. .......+|+ ||....+.. .
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHHH
Confidence 000111111 11111110 234566888999974 334544443333 2223444454 444433322 2
Q ss_pred cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 298 METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 298 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
.+....+.+.+++.++....+...+....... -.+....|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 23456789999999999888888774333111 1455778899999887654
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.0005 Score=74.38 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=94.8
Q ss_pred CCccccchhhH-HHHHHHHhcC---CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC--eEEEEEeCCCCCHHHHHHH
Q 035887 153 EPTIVGLDSTF-DKVWRCLIQE---QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE--VVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 153 ~~~~vGr~~~~-~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~ 226 (886)
++.++|-.-.. -.+...+.+. ....+.|||..|.|||.|++++.+.. ..... .+++++. +....+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~s------e~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTS------EDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccH------HHHHHH
Confidence 44556654322 2233333332 37899999999999999999999998 33343 4555532 333333
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch----hhhhhccCCCCCCCCCCcEEEEEcCCh---------h
Q 035887 227 IGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER----VDLAKLGVPFPAISKNASKIVFTTRLE---------N 293 (886)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~~~~~~~~gs~iiiTtR~~---------~ 293 (886)
.+..+.. .-.+.+++.. .-=++++||++-. ..-+.+...|......|..||+|++.. .
T Consensus 158 ~v~a~~~-------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~r 228 (408)
T COG0593 158 FVKALRD-------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDR 228 (408)
T ss_pred HHHHHHh-------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHH
Confidence 3333321 2233445554 3448889999742 112233333332334455899999642 3
Q ss_pred hhhccCccceEEccCCChHHHHHHHHHHhcCCc
Q 035887 294 VCGLMETQKKFKVECLGDNEAWELFLQKVGEET 326 (886)
Q Consensus 294 v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 326 (886)
+...+...-.+.+++++.+....++.+++....
T Consensus 229 L~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 229 LRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 345556677899999999999999999875444
No 158
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00036 Score=72.73 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=104.5
Q ss_pred CCccccchhhHHHHHHHHhcCC---ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQEQ---VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
++.+.+|+..+..+..++.+.. .+.|.|+|..|.|||.+.+++++.. .. ..+|+++-+.+..+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999987642 3566899999999999999999876 22 3589999999999999999999
Q ss_pred HhCCCC------CC---CHHHHHHHHHH--Hhc--cCcEEEEEccccchhhhhh--------ccCCCCCCCCCCcEEEEE
Q 035887 230 RIGFLE------NR---SLEEKASGIFK--ILS--KKKFLLLLDDIWERVDLAK--------LGVPFPAISKNASKIVFT 288 (886)
Q Consensus 230 ~l~~~~------~~---~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~--------l~~~~~~~~~~gs~iiiT 288 (886)
+.+..+ .. +.......+.+ ..+ ++.++||||+++...+.+. +....+ .. .-+|++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~---~~-~i~iil 154 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN---EP-TIVIIL 154 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC---CC-ceEEEE
Confidence 996222 11 11122222333 122 3689999999976443332 112222 12 233333
Q ss_pred cCC--hhh-hhccCccc--eEEccCCChHHHHHHHHHH
Q 035887 289 TRL--ENV-CGLMETQK--KFKVECLGDNEAWELFLQK 321 (886)
Q Consensus 289 tR~--~~v-~~~~~~~~--~~~l~~L~~~e~~~lf~~~ 321 (886)
+-. +.. ...+++.. ++..+..+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 332 222 22245443 5677889999999888664
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0016 Score=73.68 Aligned_cols=154 Identities=20% Similarity=0.265 Sum_probs=88.6
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHH---H
Q 035887 155 TIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQ---E 225 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~---~ 225 (886)
+-+|.++.+++|+++|.- -+-+++.+||++|+|||+|++.++... ...|-. ++++.-.|..++- +
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHhccccc
Confidence 449999999999999863 245899999999999999999999987 444532 3333333333221 1
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch---------hhhhhccCC-----CC----CCCCCCcEEEE
Q 035887 226 KIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER---------VDLAKLGVP-----FP----AISKNASKIVF 287 (886)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~l~~~-----~~----~~~~~gs~iii 287 (886)
..+.+ -+..+.+.+++ .+.+.=+++||.++.. ..+-++..| |. ...-.=|+|+.
T Consensus 398 TYIGa-------mPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 398 TYIGA-------MPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccc-------CChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 11111 11111222221 2346678999998631 111111111 00 01112245544
Q ss_pred -EcCC-hh-h-hhccCccceEEccCCChHHHHHHHHHHh
Q 035887 288 -TTRL-EN-V-CGLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 288 -TtR~-~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
||-+ -+ + +..+....+|++.+.+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4433 22 2 3334556789999999999888877765
No 160
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0041 Score=66.31 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=107.6
Q ss_pred ccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccC-------------CCCCCeEEEEEeCCCCCH
Q 035887 155 TIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDA-------------PNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~~F~~~~wv~~s~~~~~ 220 (886)
.++|.+..++.+.+.+..+++ ....++|+.|+||+++|..+.....-. ..|-| ..|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 579999999999999988775 789999999999999999887765211 11222 233321100000
Q ss_pred HHHHHHHHHHhCCCC----CCCHHHHHHHHHHHhc-----cCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEc
Q 035887 221 ESVQEKIGERIGFLE----NRSLEEKASGIFKILS-----KKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTT 289 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~----~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTt 289 (886)
..+-.+-++..+... ....++. ..+.+.+. +++=++|+|+++. ......+...+- ...++ .+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp~~-~fILi~ 160 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE-EPGNG-TLILIA 160 (314)
T ss_pred cccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh-CCCCC-eEEEEE
Confidence 000001111111000 1112222 23333333 4566889999864 333444433333 22233 455555
Q ss_pred CCh-hh-hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 290 RLE-NV-CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 290 R~~-~v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
.+. .+ ....+....+++.+++.++..+.+.+...... .......++..++|.|..+...
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 443 33 22334467899999999999999988653211 1111367899999999776543
No 161
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.001 Score=77.24 Aligned_cols=181 Identities=13% Similarity=0.139 Sum_probs=104.3
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCC-------------------CCCeEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPN-------------------NFEVVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~F~~~~wv~ 213 (886)
.+++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+...-... +++ ++.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~eid 94 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFEID 94 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eeeee
Confidence 4689999999999999988766 45689999999999999998887511000 111 11111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEE-Ec
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI-LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF-TT 289 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii-Tt 289 (886)
......+.+ ..++.+.+... ..+++=++|+|+++. ......+...+. .......+|+ ||
T Consensus 95 ~~s~~~v~~----------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~ 157 (576)
T PRK14965 95 GASNTGVDD----------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATT 157 (576)
T ss_pred ccCccCHHH----------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeC
Confidence 111111111 11111111111 123455788999964 333444443333 2233455554 54
Q ss_pred CChhhhh-ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHHH
Q 035887 290 RLENVCG-LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITTG 355 (886)
Q Consensus 290 R~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 355 (886)
....+.. ..+....+++.+++.++....+...+...... --.+....|++.++|..- |+..+-
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444432 23345678999999999888887766433211 124557789999998664 444443
No 162
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.60 E-value=0.0021 Score=77.81 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.+..+++|.+++.. .+..++.++|++|+|||++|+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999887642 234589999999999999999999987
No 163
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=1.1e-05 Score=90.70 Aligned_cols=106 Identities=31% Similarity=0.341 Sum_probs=82.1
Q ss_pred CCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEee
Q 035887 530 ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLN 609 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~ 609 (886)
.+..+..+.+..|.+..+... +..++.|.+|++.+| .+..+...+..+.+|++|++++|.|+.+ .++..|..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheeccccccccc-cchhhccchhhhe
Confidence 456666666777765542222 567888999999999 7887775588899999999999999988 4678888899999
Q ss_pred ccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 610 LEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 610 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
+.+|. +..++. +..+.+|+.+++.+|...
T Consensus 147 l~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNL-ISDISG--LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCc-chhccC--CccchhhhcccCCcchhh
Confidence 99986 677775 667888888888887654
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.60 E-value=0.00074 Score=82.44 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=88.3
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCC----CCeEEE-EEeCCCCCHHHHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNN----FEVVIW-VVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~w-v~~s~~~~~~~~~~~i~~ 229 (886)
.++||+.++.+++..|......-+.++|++|+|||++|+.+..+.. .... ....+| +.+ ..+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l~~------~~l~a---- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLALDM------GALIA---- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEeeH------HHHhh----
Confidence 4799999999999999876666677999999999999999988762 1111 122233 221 11110
Q ss_pred HhCCCCCCCHHHHHHHHHHHhc--cCcEEEEEccccchh---------hhhhccCCCCCCCCCCcEEEEEcCChhhh---
Q 035887 230 RIGFLENRSLEEKASGIFKILS--KKKFLLLLDDIWERV---------DLAKLGVPFPAISKNASKIVFTTRLENVC--- 295 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~gs~iiiTtR~~~v~--- 295 (886)
+.....+.+.....+.+.+. +++.+|++|++.... +...+..+.. ....-++|-+|...+..
T Consensus 243 --~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~ 318 (852)
T TIGR03346 243 --GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYI 318 (852)
T ss_pred --cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHh
Confidence 00001122222233333332 468999999997431 1122222221 12223455555544331
Q ss_pred ----hccCccceEEccCCChHHHHHHHHHHh
Q 035887 296 ----GLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 296 ----~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
........+.++..+.++..+++....
T Consensus 319 ~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 319 EKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 112234578899999999999887654
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00045 Score=81.89 Aligned_cols=155 Identities=18% Similarity=0.273 Sum_probs=90.1
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCC---CCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNN---FEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.++||+.++.++++.|......-+.++|++|+|||++|+.++......... .++.+|.. +...++ .
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll----a-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL----A-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh----c--
Confidence 579999999999999987545556789999999999999999875221111 23444421 111111 0
Q ss_pred CCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccch----------hhhhhccCCCCCCCCCCcEEEEEcCChhhh-----
Q 035887 232 GFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWER----------VDLAKLGVPFPAISKNASKIVFTTRLENVC----- 295 (886)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~----- 295 (886)
+.....+.++....+.+.+ +.++.+|++|++... .+...+..++. ....-+||-+|...+..
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHHHhhc
Confidence 1111112233333333333 346789999999632 12222222222 12234455555544321
Q ss_pred --hccCccceEEccCCChHHHHHHHHHHh
Q 035887 296 --GLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 296 --~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
......+.+.+++++.+++.+++....
T Consensus 334 D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 334 DRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112234689999999999999998764
No 166
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=9.1e-06 Score=71.76 Aligned_cols=92 Identities=23% Similarity=0.307 Sum_probs=74.3
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEe
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCL 608 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L 608 (886)
....+|...++++|.++++|+.|-..++.+..|+|++| .+..+|..+..++.|+.|+++.|.+...|.-|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 44567778888888888888887777888888888888 88888888888888888888888888888888888888888
Q ss_pred eccccccccccccc
Q 035887 609 NLEYTRYLQKIPRQ 622 (886)
Q Consensus 609 ~l~~~~~l~~lp~~ 622 (886)
+..++. ...+|-.
T Consensus 129 ds~~na-~~eid~d 141 (177)
T KOG4579|consen 129 DSPENA-RAEIDVD 141 (177)
T ss_pred cCCCCc-cccCcHH
Confidence 887775 4556543
No 167
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.54 E-value=0.0032 Score=75.50 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=85.9
Q ss_pred CCccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (886)
+...+|.++.+++|++++.. ....++.++|++|+||||+|+.+.... ...|-. +..+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccc
Confidence 44579999999999988863 245689999999999999999999876 233322 333333333222211
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch---------hhhhhccCC------------CCCCCCCCcEE
Q 035887 227 IGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER---------VDLAKLGVP------------FPAISKNASKI 285 (886)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~l~~~------------~~~~~~~gs~i 285 (886)
-....+ .....+...+... ....-+++||.++.. ..+-++..+ .+ ..-...-+
T Consensus 395 ~~~~~g----~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~-~dls~v~~ 468 (784)
T PRK10787 395 RRTYIG----SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVD-YDLSDVMF 468 (784)
T ss_pred hhccCC----CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccccc-ccCCceEE
Confidence 100111 1111222222221 123347889998632 111111111 01 11123334
Q ss_pred EEEcCChhhh-hccCccceEEccCCChHHHHHHHHHHh
Q 035887 286 VFTTRLENVC-GLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 286 iiTtR~~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
|.|+.+..+. ...+....+++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4455443331 112334578999999999888877765
No 168
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.53 E-value=0.0031 Score=71.01 Aligned_cols=201 Identities=15% Similarity=0.108 Sum_probs=126.0
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhc-----cCCCCCCeEEEEEeCCCCCHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFL-----DAPNNFEVVIWVVVSKDMQLESV 223 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~F~~~~wv~~s~~~~~~~~ 223 (886)
..+-+||.+..+|.+++.. +..+.+.|.|-+|.|||..+..|.+... .....|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4567899999999988864 3345899999999999999999999652 1123443 345555555679999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhc-----cCcEEEEEccccchhh--hhhccCCCCCCCCCCcEEEEEcCChh---
Q 035887 224 QEKIGERIGFLENRSLEEKASGIFKILS-----KKKFLLLLDDIWERVD--LAKLGVPFPAISKNASKIVFTTRLEN--- 293 (886)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~gs~iiiTtR~~~--- 293 (886)
+..|..++.+. ........+.|..++. .+..++++|+++..-. .+-+...|.+...++||++|.+=...
T Consensus 475 Y~~I~~~lsg~-~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 475 YEKIWEALSGE-RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHHhcccC-cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 99999999887 3455555666666664 3678888898864311 12222233334567888776543211
Q ss_pred --------hhhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHH
Q 035887 294 --------VCGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRA 357 (886)
Q Consensus 294 --------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 357 (886)
++..+ ....+..+|.+.++-.++......+...-...-.+-+++.|+.-.|..-.|+.+.-++
T Consensus 554 PEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 554 PERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11111 1346788888888888887776643321222333445555655555555555444443
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.53 E-value=0.003 Score=63.09 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHH----hcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCL----IQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++|.|..++.|++-. ......-+.+||..|.|||++++.+.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 57899999988887643 33455677889999999999999999988
No 170
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=0.00015 Score=75.64 Aligned_cols=103 Identities=25% Similarity=0.261 Sum_probs=60.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcE
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKF 255 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 255 (886)
..+.++|..|+|||.||..+++... .....+++++ ..+++..+..........+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~~~~~~~----~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSGKEDENE----IIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccccccHHH----HHHHhcCCC-
Confidence 4588999999999999999999972 2234567775 3445555555443221122222 333344444
Q ss_pred EEEEccccc--hhhhh--hccCCCCCCCCCCcEEEEEcCCh
Q 035887 256 LLLLDDIWE--RVDLA--KLGVPFPAISKNASKIVFTTRLE 292 (886)
Q Consensus 256 LlVlDdv~~--~~~~~--~l~~~~~~~~~~gs~iiiTtR~~ 292 (886)
||||||+.. ..+|. .+...+......+..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999942 23332 22222221123456789988753
No 171
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0029 Score=67.90 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=59.3
Q ss_pred CcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChh-hh-hccCccceEEccCCChHHHHHHHHHHhcCCcCC
Q 035887 253 KKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLEN-VC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLG 328 (886)
Q Consensus 253 k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 328 (886)
++=++|+|+++. ......+...+- ....++.+|+||.+.+ +. ...+....+.+.+++.+++.+.+.......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 344556799974 344444433333 3334667777777654 32 223445679999999999999887754211
Q ss_pred CCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 329 SHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 329 ~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
..+.+..++..++|.|+.+..+
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567889999999866544
No 172
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=4.1e-06 Score=93.03 Aligned_cols=101 Identities=26% Similarity=0.387 Sum_probs=56.5
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchh-hhccCCCcEeecc
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLNLE 611 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~ 611 (886)
.|.+-++++|.+..+..+ +.-++.|+.|+|++| .+++.- .+..|.+|++|||+.|.+..+|.- ...+ .|+.|+++
T Consensus 165 ~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 344444444444333222 444566666777766 555444 555666677777777666666542 2222 26666666
Q ss_pred ccccccccccccccCCCCCCEEEeccCCC
Q 035887 612 YTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 612 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
+|. ++.+-. |.+|.+|+.|++++|-.
T Consensus 241 nN~-l~tL~g--ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 241 NNA-LTTLRG--IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ccH-HHhhhh--HHhhhhhhccchhHhhh
Confidence 664 455543 66677777777766544
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.47 E-value=0.0027 Score=72.98 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=93.4
Q ss_pred CccccchhhHHHHHHHHh---c---------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLI---Q---------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.+++|.+..++++.+++. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 357888877766655443 1 123458899999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh------------hh----hhccCCCCC-CCCCCcE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV------------DL----AKLGVPFPA-ISKNASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~~----~~l~~~~~~-~~~~gs~ 284 (886)
++.. ... ......+...+.......+.+|++||++... .. ..+...+.. ....+-.
T Consensus 123 ~~~~----~~~---g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 123 DFVE----MFV---GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HHHH----HHh---cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 1111 110 1122223333333344577899999995421 01 111111110 1223445
Q ss_pred EEEEcCChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 285 IVFTTRLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 285 iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
||.||..... .+...-+..+.+...+.++-.++|+.+......... .....+++.+.|.-
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 5666665432 111122457889999998889999887754321111 12457888888743
No 174
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.42 E-value=0.013 Score=63.44 Aligned_cols=194 Identities=14% Similarity=0.212 Sum_probs=125.1
Q ss_pred chhhHHHHHHHHhcCCceEEEEEcCCCchhHHHH-HHHHHhhccCCCCCCeEEEEEeCCC---CCHHHHHHHHHHHhCCC
Q 035887 159 LDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLL-TQINNKFLDAPNNFEVVIWVVVSKD---MQLESVQEKIGERIGFL 234 (886)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l~~~ 234 (886)
|.+.+++|-.||.+..-.+|.|.||-|+||+.|+ .++..+. + .++.+.|.+- .+-..+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999887889999999999999999 7777665 1 2777776543 34556666666666532
Q ss_pred C--------------------------CCCHH-HHHH-------HHHHH-------------------hc---cCcEEEE
Q 035887 235 E--------------------------NRSLE-EKAS-------GIFKI-------------------LS---KKKFLLL 258 (886)
Q Consensus 235 ~--------------------------~~~~~-~~~~-------~l~~~-------------------l~---~k~~LlV 258 (886)
. ..+.+ ++.. .|++. |+ ..+=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 12222 2211 12210 11 1256899
Q ss_pred Eccccch-----------hhhhhccCCCCCCCCCCcEEEEEcCChhhhh----cc--CccceEEccCCChHHHHHHHHHH
Q 035887 259 LDDIWER-----------VDLAKLGVPFPAISKNASKIVFTTRLENVCG----LM--ETQKKFKVECLGDNEAWELFLQK 321 (886)
Q Consensus 259 lDdv~~~-----------~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~----~~--~~~~~~~l~~L~~~e~~~lf~~~ 321 (886)
+|+.-.. .+|... + ...+-.+||++|-+..... .+ ...+.+.|...+++-|.++...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---L--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---H--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998532 234332 2 2344567999888755432 33 23467899999999999999998
Q ss_pred hcCCcCC------------CC-----CChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCH
Q 035887 322 VGEETLG------------SH-----PDIPELAKTVAKECCGLPLALITTGRAMSGKKTP 364 (886)
Q Consensus 322 ~~~~~~~------------~~-----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~ 364 (886)
....... .. .....-....++..||--.-+..+++-++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 7543100 00 1233445667888899999999999888775443
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=4.4e-05 Score=89.47 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=91.2
Q ss_pred CcceeeeecCcc--ccccChhhhcCCCCCcEEEccCCCcc-cccCccccCccCCCEEeccCCCccccchhhhccCCCcEe
Q 035887 532 PRLLTLFLGINR--LDTISSDFFDFMPSLKVLNLSKNRSL-SQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCL 608 (886)
Q Consensus 532 ~~Lr~L~l~~~~--l~~~~~~~~~~l~~Lr~L~Ls~~~~i-~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L 608 (886)
.+|+.|++.|.. ....|.....-+|.|+.|.+++-... ..+-.-..++++|..||+|+|+++.+ .++++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 588999998863 23444454566899999999986221 22333445688999999999999999 789999999999
Q ss_pred ecccccccc--ccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccc
Q 035887 609 NLEYTRYLQ--KIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSF 677 (886)
Q Consensus 609 ~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~ 677 (886)
.+++-.... .+-. +-+|++|++|+++.......- . . ....++.-..|++|+.|+.+..+.
T Consensus 201 ~mrnLe~e~~~~l~~--LF~L~~L~vLDIS~~~~~~~~-~-i-----i~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLID--LFNLKKLRVLDISRDKNNDDT-K-I-----IEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHH--HhcccCCCeeeccccccccch-H-H-----HHHHHHhcccCccccEEecCCcch
Confidence 887654321 1112 668899999999866544310 0 0 111233345578888888885554
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=9.3e-05 Score=86.79 Aligned_cols=129 Identities=20% Similarity=0.299 Sum_probs=91.8
Q ss_pred cchhhhhccccceEE--cC--CCCCCCcceeeeecCcccccc-ChhhhcCCCCCcEEEccCCCcccccCccccCccCCCE
Q 035887 510 EDRRKISLMRNKIVI--LS--KPPACPRLLTLFLGINRLDTI-SSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQY 584 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~--l~--~~~~~~~Lr~L~l~~~~l~~~-~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 584 (886)
.++++|++.+...-. -+ -...+|.|++|.+.+-.+..- -.....++++|+.||+|++ +++.+ ..+++|+||+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 489999998754311 00 115689999999988654321 1234578999999999999 88888 58999999999
Q ss_pred EeccCCCccccc--hhhhccCCCcEeecccccccccc--cccc---ccCCCCCCEEEeccCCC
Q 035887 585 LNLSETSIKELP--HELKALTKLKCLNLEYTRYLQKI--PRQL---LCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 585 L~L~~~~i~~LP--~~i~~L~~L~~L~l~~~~~l~~l--p~~~---i~~l~~L~~L~l~~~~~ 640 (886)
|.+++-.+..-+ ..+.+|++|++||++........ .... -..|++||.|+.++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999997776432 45788999999999987542221 1100 13478899998886543
No 177
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.023 Score=56.71 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=103.5
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCHHHHHHH----HH
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVS-KDMQLESVQEKIGERIGFLENRSLEEKASG----IF 247 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----l~ 247 (886)
++-+++.++|.-|.|||.+++...... . -+.++-+.+. +......+...|+..+..+........... +.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 456799999999999999999555544 1 1122223333 445777888889888887543343433333 33
Q ss_pred HHh-ccCc-EEEEEccccch--hhhhhccCCCCC--CCCCCcEEEEEcC--------ChhhhhccCccce-EEccCCChH
Q 035887 248 KIL-SKKK-FLLLLDDIWER--VDLAKLGVPFPA--ISKNASKIVFTTR--------LENVCGLMETQKK-FKVECLGDN 312 (886)
Q Consensus 248 ~~l-~~k~-~LlVlDdv~~~--~~~~~l~~~~~~--~~~~gs~iiiTtR--------~~~v~~~~~~~~~-~~l~~L~~~ 312 (886)
... ++++ ..+++||..+. ..++.++..... .....-+|+..-. .......-..... |.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 3566 89999998753 233333211110 1111112332221 1111111112233 899999999
Q ss_pred HHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHH
Q 035887 313 EAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGR 356 (886)
Q Consensus 313 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 356 (886)
+...++..+........+---.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99888888775443111111244567889999999999976654
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.34 E-value=0.00076 Score=62.27 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEcCCCchhHHHHHHHHHhh
Q 035887 178 IGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 179
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00024 Score=67.44 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=43.8
Q ss_pred eeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccC-ccCCCEEeccCCCccccch--hhhccCCCcEeecc
Q 035887 535 LTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSK-LVSLQYLNLSETSIKELPH--ELKALTKLKCLNLE 611 (886)
Q Consensus 535 r~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~-L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~L~l~ 611 (886)
..+++.+|.+..++. |..++.|..|.|++| .|+.+-+.+.. +++|..|.|.+|+|.+|-. -+..+++|++|.+-
T Consensus 45 d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 344444444433322 444455555555555 44444333332 3345555555554444321 13344455555554
Q ss_pred cccccccc---ccccccCCCCCCEEEecc
Q 035887 612 YTRYLQKI---PRQLLCSFSGLEVLRMLD 637 (886)
Q Consensus 612 ~~~~l~~l---p~~~i~~l~~L~~L~l~~ 637 (886)
+|+. ..- -.-++.++++|++|++..
T Consensus 122 ~Npv-~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPV-EHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCch-hcccCceeEEEEecCcceEeehhh
Confidence 4432 111 112355666666666553
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0062 Score=65.78 Aligned_cols=146 Identities=7% Similarity=0.045 Sum_probs=85.4
Q ss_pred cccc-chhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC-------------------CCCCeEEEEE
Q 035887 155 TIVG-LDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP-------------------NNFEVVIWVV 213 (886)
Q Consensus 155 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~ 213 (886)
.++| -+..++.+.+.+..+++ ....++|+.|+||||+|+.+.....-.. .|.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4667 67778888888877765 4568999999999999999877752100 0222211111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEE
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI----LSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVF 287 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iii 287 (886)
-+.. ...++..+.+... ..+.+=++|+|+++.. .....+...+. ....++.+|+
T Consensus 86 ~~~~-------------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~~~Il 145 (329)
T PRK08058 86 DGQS-------------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGGTTAIL 145 (329)
T ss_pred cccc-------------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCceEEE
Confidence 1111 1122222221111 2345557889998642 33444444443 3345666777
Q ss_pred EcCChh-hh-hccCccceEEccCCChHHHHHHHHH
Q 035887 288 TTRLEN-VC-GLMETQKKFKVECLGDNEAWELFLQ 320 (886)
Q Consensus 288 TtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~ 320 (886)
+|.+.. +. ...+....+++.+++.++..+.+.+
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 776543 32 2234457899999999999887765
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.00013 Score=70.19 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=29.3
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEE
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWV 212 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 212 (886)
+.|.|+|++|+||||||+.+++...-..-+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3588999999999999999999872223567777763
No 182
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00065 Score=68.32 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.3
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV 214 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 214 (886)
-.++|+|..|+||||++..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467899999999999999999887 678888877754
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.27 E-value=0.001 Score=62.12 Aligned_cols=87 Identities=23% Similarity=0.102 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhccC
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-NRSLEEKASGIFKILSKK 253 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l~~k 253 (886)
...+.|+|++|+||||+|+.+.... ......++++..+........... ........ ..........+.+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999887 222234666665544332222211 00111111 222333333444444444
Q ss_pred c-EEEEEccccch
Q 035887 254 K-FLLLLDDIWER 265 (886)
Q Consensus 254 ~-~LlVlDdv~~~ 265 (886)
+ .++++|+++..
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 4 99999999854
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=97.26 E-value=0.0098 Score=69.48 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHH---HhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRC---LIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.++.|.++.++++.+. +... ..+-|.++|++|.|||++|+.+++.. ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 3578887766665544 3321 23468899999999999999998876 222 2332211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch----------------hhhhhccCCCCC-CCCCCcE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER----------------VDLAKLGVPFPA-ISKNASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~-~~~~gs~ 284 (886)
++.. ... ......+...+.......+.+|++||++.. ..+..+...+.. ....+-.
T Consensus 251 ~f~~----~~~---g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 251 EFVE----MFV---GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHH----Hhh---hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1110 000 011122333344445568899999999532 112222222210 1233556
Q ss_pred EEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc
Q 035887 285 IVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL 347 (886)
Q Consensus 285 iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 347 (886)
||.||...+.... . .-...+.+...+.++-.++++.++..... ........+++.+.|.
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCC
Confidence 6667766443221 1 12357889999999999999988754221 1123356788888773
No 185
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0079 Score=67.88 Aligned_cols=153 Identities=16% Similarity=0.243 Sum_probs=88.7
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
.-+|.++.+++|++++.- -+-+++..+|++|||||++|+.++... ...|. -++|+.-.|..+|-..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeIkGH-- 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEIKGH-- 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhhccc--
Confidence 449999999999999863 256899999999999999999999987 33442 2445554454443211
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhc---cCcEEEEEccccch---------hhhhhccCC----------CCCCCCCCcEEE
Q 035887 229 ERIGFLENRSLEEKASGIFKILS---KKKFLLLLDDIWER---------VDLAKLGVP----------FPAISKNASKIV 286 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~---------~~~~~l~~~----------~~~~~~~gs~ii 286 (886)
...-...+.-++.+.|+ ...-|+.+|.|+.. ..+-++..| +. ..-.=|||+
T Consensus 484 ------RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLd-Vp~DLSkVL 556 (906)
T KOG2004|consen 484 ------RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLD-VPVDLSKVL 556 (906)
T ss_pred ------ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccc-cccchhheE
Confidence 00001111122333333 34558888988631 111111111 11 122347776
Q ss_pred EEcCChhhh----hccCccceEEccCCChHHHHHHHHHHh
Q 035887 287 FTTRLENVC----GLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 287 iTtR~~~v~----~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
....-..+. ........|++.+...+|-.++-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 644432222 112334678999988888777665554
No 186
>PHA00729 NTP-binding motif containing protein
Probab=97.23 E-value=0.0016 Score=64.79 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 165 KVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++++.+.+.+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999999875
No 187
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0058 Score=67.59 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=61.2
Q ss_pred ccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLES 222 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (886)
++=|.++.+.++.+++.. ...+-|.++|++|.|||.||+.+.+.. .-. ++.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVP-----FLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCc-----eEeecch-----
Confidence 456788888888887653 245668899999999999999999987 222 3333322
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEcccc
Q 035887 223 VQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 263 (886)
+|+.... ..+++.+.+...+.-+.-++++++|+++
T Consensus 258 ---eivSGvS---GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGVS---GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhcccC---cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 2333333 2344444444555556789999999996
No 188
>PRK12377 putative replication protein; Provisional
Probab=97.21 E-value=0.00079 Score=68.81 Aligned_cols=74 Identities=31% Similarity=0.314 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
+...+.++|.+|+|||+||..+++... .....++++++. +++..+-...... ....+ +.+.+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~~--~~~~~----~l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDNG--QSGEK----FLQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhcc--chHHH----HHHHh-cC
Confidence 346789999999999999999999982 334456777653 3444443333211 11111 22222 35
Q ss_pred cEEEEEcccc
Q 035887 254 KFLLLLDDIW 263 (886)
Q Consensus 254 ~~LlVlDdv~ 263 (886)
-=||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 6699999994
No 189
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.018 Score=61.17 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=95.2
Q ss_pred hhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccC----------------CCCCCeEEEEEeCCC-CCHHH
Q 035887 161 STFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDA----------------PNNFEVVIWVVVSKD-MQLES 222 (886)
Q Consensus 161 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~----------------~~~F~~~~wv~~s~~-~~~~~ 222 (886)
...+++...+..++++ .+.++|+.|+||+++|..+.....-. ..|-| ..|+..... .+..
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~k- 88 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGDK- 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCccccc-
Confidence 3466777777776654 68899999999999999888765210 01111 122210000 0000
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCCh-hh
Q 035887 223 VQEKIGERIGFLENRSLEEKASGIFKIL-----SKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRLE-NV 294 (886)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v 294 (886)
.......+++. .+.+.+ .+++=++|+|+++.. ..-..+...+- ....++.+|++|.+. .+
T Consensus 89 ----------~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 89 ----------LRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQPARL 156 (319)
T ss_pred ----------ccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECChhhC
Confidence 00000112211 122222 245568999999743 22233322332 333466677666654 33
Q ss_pred h-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 295 C-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 295 ~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
. ...+....+.+.+++.+++.+.+... +. + ...+..++..++|.|+.+..+.
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 2 33344568899999999998888653 11 1 2236678999999998775443
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.17 E-value=0.0036 Score=63.38 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=41.6
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEE
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWV 212 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 212 (886)
.+.++......++.++.+. .+|.+.|++|.|||+||..+..+.. ..+.|+.++-+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~ 110 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVT 110 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEe
Confidence 4577888888899988763 5999999999999999999888641 12345544443
No 191
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.17 E-value=0.0029 Score=73.17 Aligned_cols=194 Identities=12% Similarity=0.125 Sum_probs=100.0
Q ss_pred CccccchhhHHHHHHHHhcC-----CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeC---CCCCHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQE-----QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVS---KDMQLESVQE 225 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s---~~~~~~~~~~ 225 (886)
.+++|-++.++++..++... ...++.|+|++|+||||+++.++... .++..-|+.-. ...+...+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l-----~~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL-----GIQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh-----hhHHHHHhhhhhhcccccccccch
Confidence 46899999999999998752 33579999999999999999999876 12223332210 0001111112
Q ss_pred HHHHHhCCCC--CCCHHHHHHHHHH---H----hccCcEEEEEccccch-----hhhhhccC-CCCCCCCCCcEEEEEcC
Q 035887 226 KIGERIGFLE--NRSLEEKASGIFK---I----LSKKKFLLLLDDIWER-----VDLAKLGV-PFPAISKNASKIVFTTR 290 (886)
Q Consensus 226 ~i~~~l~~~~--~~~~~~~~~~l~~---~----l~~k~~LlVlDdv~~~-----~~~~~l~~-~~~~~~~~gs~iiiTtR 290 (886)
.+.+++.... ............. . ..+++.+|++|++.+. ..+..+.. ... ..+.-.-|+|||-
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~-e~~~~pLI~I~TE 237 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV-SIGRCPLVFIITE 237 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh-cCCCceEEEEecC
Confidence 2222222110 0111111111111 1 1356789999999432 12333322 222 2222344556663
Q ss_pred Chh---------hh-------hcc--CccceEEccCCChHHHHHHHHHHhcCCcCCCCCC----hHHHHHHHHHHcCCch
Q 035887 291 LEN---------VC-------GLM--ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPD----IPELAKTVAKECCGLP 348 (886)
Q Consensus 291 ~~~---------v~-------~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~----~~~~~~~i~~~c~glP 348 (886)
+.. .. ... .....|.+.+++..+-.+.+.+.+.........+ -.+....|+..++|--
T Consensus 238 ~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 238 SLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred CccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 211 00 011 1224589999999997777776664321111011 1345667777777765
Q ss_pred hHHHH
Q 035887 349 LALIT 353 (886)
Q Consensus 349 lai~~ 353 (886)
..+..
T Consensus 318 RsAIn 322 (637)
T TIGR00602 318 RSAIN 322 (637)
T ss_pred HHHHH
Confidence 44433
No 192
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00045 Score=69.36 Aligned_cols=85 Identities=27% Similarity=0.294 Sum_probs=60.1
Q ss_pred CCCCcceeeeecCccccccC--hhhhcCCCCCcEEEccCCCcccccCccc-cCccCCCEEeccCCCcc--ccchhhhccC
Q 035887 529 PACPRLLTLFLGINRLDTIS--SDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQYLNLSETSIK--ELPHELKALT 603 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~--~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i-~~L~~L~~L~L~~~~i~--~LP~~i~~L~ 603 (886)
..+..++.|++.+|.+.... .....+|+.|++|++++| .+..--.+. -.+.+|++|-|.|+.+. .+...+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 46788889999988765443 344678999999999988 433211112 24678999999988554 5666677888
Q ss_pred CCcEeeccccc
Q 035887 604 KLKCLNLEYTR 614 (886)
Q Consensus 604 ~L~~L~l~~~~ 614 (886)
.++.|.++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 88888887773
No 193
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.015 Score=60.65 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=105.8
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.+=|-++.+++|.+.+.- +..+-|.+||++|.|||-||++|++.. ...| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 345678888888777642 256778899999999999999999987 3444 333221
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-cCcEEEEEccccch-------------h---hhhhccCCCCC-CCCCCc
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILS-KKKFLLLLDDIWER-------------V---DLAKLGVPFPA-ISKNAS 283 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-------------~---~~~~l~~~~~~-~~~~gs 283 (886)
++.++.+ | ....++..+.+.-+ ..+..|++|.++.. + ..-++...+.. +....-
T Consensus 220 ElVqKYi---G-----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 220 ELVQKYI---G-----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred HHHHHHh---c-----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 1221111 1 22334444555444 46899999998631 1 11122222210 234457
Q ss_pred EEEEEcCChhhhh-----ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh----HHHHH
Q 035887 284 KIVFTTRLENVCG-----LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL----ALITT 354 (886)
Q Consensus 284 ~iiiTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl----ai~~~ 354 (886)
|||..|...++.+ .-.-+..|+++.-+.+.-.++|+-++..-....+-++ +.+++.|.|.-= |+.+=
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHH
Confidence 8999888766632 2223567888865666666788877765543344444 456667776653 34444
Q ss_pred HHHhc
Q 035887 355 GRAMS 359 (886)
Q Consensus 355 ~~~l~ 359 (886)
|++++
T Consensus 368 AGm~A 372 (406)
T COG1222 368 AGMFA 372 (406)
T ss_pred HhHHH
Confidence 55443
No 194
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=8.5e-05 Score=85.80 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=16.8
Q ss_pred ccEEeccccccccccccCcC--CCCCccEEeeccCCCCCC
Q 035887 806 LQYLRLQVLTKLKIIFRNAL--PFPNLLELFVSECPNLKK 843 (886)
Q Consensus 806 L~~L~L~~~~~L~~i~~~~~--~~p~L~~L~i~~C~~L~~ 843 (886)
|+.|.+..|...+.-..... .+.++..+.+.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 55555555544443221111 134455555555555443
No 195
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.11 E-value=0.0018 Score=62.77 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=64.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.++||-++.++++--...+++.+-+.|.||+|+||||-+..+++... ...+-+.+.-..+|++.++
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGI------------- 92 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGI------------- 92 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCcccccc-------------
Confidence 36899999999998888889999999999999999999999888872 2223344555555554433
Q ss_pred CCCCCHHHHHHHHHHHhc-------cCcEEEEEccccch
Q 035887 234 LENRSLEEKASGIFKILS-------KKKFLLLLDDIWER 265 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~-------~k~~LlVlDdv~~~ 265 (886)
+-+..+++.+-+ ++-=.++||..++.
T Consensus 93 ------DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 93 ------DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred ------HHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 333344444333 23347889998764
No 196
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=6.1e-05 Score=66.69 Aligned_cols=105 Identities=26% Similarity=0.363 Sum_probs=81.0
Q ss_pred cceeeeecCccccccChh--hhcCCCCCcEEEccCCCcccccCccccCc-cCCCEEeccCCCccccchhhhccCCCcEee
Q 035887 533 RLLTLFLGINRLDTISSD--FFDFMPSLKVLNLSKNRSLSQLPSGVSKL-VSLQYLNLSETSIKELPHELKALTKLKCLN 609 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~--~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L-~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~ 609 (886)
.+..++++.|.+-.++.. ....-.+|...+|++| .+.++|+.+... +.+.+|++++|.|.++|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 345566666655444432 2455678888999999 899999888654 489999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCEEEeccCCC
Q 035887 610 LEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 610 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
++.|+ +...|.- +..|.+|-.|+..++..
T Consensus 107 l~~N~-l~~~p~v-i~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRFNP-LNAEPRV-IAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccCc-cccchHH-HHHHHhHHHhcCCCCcc
Confidence 99997 5667764 66688888887766544
No 197
>PRK08181 transposase; Validated
Probab=97.05 E-value=0.00065 Score=70.34 Aligned_cols=77 Identities=26% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 035887 168 RCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIF 247 (886)
Q Consensus 168 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~ 247 (886)
+|+. ...-+.++|++|+|||.||..+.+.. ......+.|+++ .++...+..... ..+.....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~~------~~L~~~l~~a~~---~~~~~~~l---- 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTRT------TDLVQKLQVARR---ELQLESAI---- 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeeeH------HHHHHHHHHHHh---CCcHHHHH----
Confidence 4554 33558999999999999999999876 223445667653 445555433321 11222222
Q ss_pred HHhccCcEEEEEcccc
Q 035887 248 KILSKKKFLLLLDDIW 263 (886)
Q Consensus 248 ~~l~~k~~LlVlDdv~ 263 (886)
+.+ .+.=|||+||+.
T Consensus 163 ~~l-~~~dLLIIDDlg 177 (269)
T PRK08181 163 AKL-DKFDLLILDDLA 177 (269)
T ss_pred HHH-hcCCEEEEeccc
Confidence 222 234599999995
No 198
>PRK07261 topology modulation protein; Provisional
Probab=97.05 E-value=0.0018 Score=62.63 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=43.3
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEE
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFL 256 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~L 256 (886)
.|.|+|++|+||||||+.+.....-..-+.|...|-.... ..+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ-------------------ERDDDDMIADISNFLLKHD-- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc-------------------cCCHHHHHHHHHHHHhCCC--
Confidence 4889999999999999999876511122445555532111 2334556666667777666
Q ss_pred EEEccccc
Q 035887 257 LLLDDIWE 264 (886)
Q Consensus 257 lVlDdv~~ 264 (886)
.|+|+...
T Consensus 61 wIidg~~~ 68 (171)
T PRK07261 61 WIIDGNYS 68 (171)
T ss_pred EEEcCcch
Confidence 67787743
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0072 Score=65.66 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc--
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILS-- 251 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-- 251 (886)
....+.+.|++|+|||+||..++..- .|..+--++-.+ . + ..++.+....+++.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~------m-------i----G~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPED------M-------I----GLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHH------c-------c----CccHHHHHHHHHHHHHHh
Confidence 45667899999999999999998663 676554443111 0 1 3345555556666554
Q ss_pred --cCcEEEEEccccchhhhhhccCCC------------CCCCCCCcEEEE--EcCChhhhhccCc----cceEEccCCCh
Q 035887 252 --KKKFLLLLDDIWERVDLAKLGVPF------------PAISKNASKIVF--TTRLENVCGLMET----QKKFKVECLGD 311 (886)
Q Consensus 252 --~k~~LlVlDdv~~~~~~~~l~~~~------------~~~~~~gs~iii--TtR~~~v~~~~~~----~~~~~l~~L~~ 311 (886)
..=-.||+||+....+|-.++..+ .....+|-|.+| ||....+...|+- ...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 355789999998766665443322 212345556544 6667778777764 34788999887
Q ss_pred -HHHHHHHHHHh-cCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHh
Q 035887 312 -NEAWELFLQKV-GEETLGSHPDIPELAKTVAKECCGLPLALITTGRAM 358 (886)
Q Consensus 312 -~e~~~lf~~~~-~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 358 (886)
++..+.++..- |. +.+...++++...+| +-..|+.+-.++
T Consensus 675 ~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHccCCC-----cchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 77777776643 22 234556667766666 333444444443
No 200
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.02 E-value=0.0072 Score=62.22 Aligned_cols=167 Identities=20% Similarity=0.183 Sum_probs=100.2
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH-HHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL-ESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~~i~ 228 (886)
..++|-.++..++-.++.. ++..-+.|+|+.|.|||+|...+..+. +..-+..+-|........ .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4579999999999888875 566677799999999999999888874 222233444444443322 22344555
Q ss_pred HHhCCC----C--CCCHHHHHHHHHHHhcc------CcEEEEEccccch-----h-hhhhccCCCCCCCCCCcEEEEEcC
Q 035887 229 ERIGFL----E--NRSLEEKASGIFKILSK------KKFLLLLDDIWER-----V-DLAKLGVPFPAISKNASKIVFTTR 290 (886)
Q Consensus 229 ~~l~~~----~--~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~-----~-~~~~l~~~~~~~~~~gs~iiiTtR 290 (886)
+|+... . ..+..+....+-..|+. -++++|+|.++-- . -+..+...-.....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 554321 1 33344444455555542 4688888887521 1 111111111112345567778998
Q ss_pred Ch-------hhhhccCccceEEccCCChHHHHHHHHHHhc
Q 035887 291 LE-------NVCGLMETQKKFKVECLGDNEAWELFLQKVG 323 (886)
Q Consensus 291 ~~-------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 323 (886)
-. .|-..+....++-++.++.++...++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 53 2333344445667788888998888888764
No 201
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.028 Score=63.32 Aligned_cols=164 Identities=18% Similarity=0.147 Sum_probs=88.3
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
++=|.|+-+.+|-+.+.- ...+-|..+|++|.|||++|+.+.+.. ...| +.++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 434466666665554432 256778899999999999999999987 3444 233221
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-------------hhhhccCCCCCCCCCCcEE-EE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------DLAKLGVPFPAISKNASKI-VF 287 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~gs~i-ii 287 (886)
++ +...- ..++..+.+..++.=+--+.+|+||.++... .+.++..-+. .......| ||
T Consensus 503 EL----~sk~v---GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD-G~e~~k~V~Vi 574 (693)
T KOG0730|consen 503 EL----FSKYV---GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD-GLEALKNVLVI 574 (693)
T ss_pred HH----HHHhc---CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc-cccccCcEEEE
Confidence 11 11111 2233333333333334467999999986321 1222222222 11122233 33
Q ss_pred -EcCChh-h-hhccC---ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHH
Q 035887 288 -TTRLEN-V-CGLME---TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAK 338 (886)
Q Consensus 288 -TtR~~~-v-~~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 338 (886)
.|-.++ + ...+. -++.+.++.-+.+--.++|+.++.+......-++.++++
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 232222 2 22233 356777777777777889999986654344445555443
No 202
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.01 E-value=0.00026 Score=72.80 Aligned_cols=194 Identities=20% Similarity=0.167 Sum_probs=114.7
Q ss_pred hcCCCCCcEEEccCCCccc-ccC----ccccCccCCCEEeccCCCcccc--------------chhhhccCCCcEeeccc
Q 035887 552 FDFMPSLKVLNLSKNRSLS-QLP----SGVSKLVSLQYLNLSETSIKEL--------------PHELKALTKLKCLNLEY 612 (886)
Q Consensus 552 ~~~l~~Lr~L~Ls~~~~i~-~lp----~~i~~L~~L~~L~L~~~~i~~L--------------P~~i~~L~~L~~L~l~~ 612 (886)
+..+++|++||||+| -+. ..+ .-+..+..|+.|.|.+|.+... -+-++.-++|+++....
T Consensus 88 L~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 345667888888877 332 222 2344567788888888866522 11234557888888887
Q ss_pred cccccccccc----cccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhh--hhhcc
Q 035887 613 TRYLQKIPRQ----LLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQ--RLLSC 686 (886)
Q Consensus 613 ~~~l~~lp~~----~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~--~l~~~ 686 (886)
|+ +..-+.. .+...+.|+.+.+..|.+... +.......+..+++|+.|++.-+.+..-. .+...
T Consensus 167 Nr-len~ga~~~A~~~~~~~~leevr~~qN~I~~e---------G~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 167 NR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPE---------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cc-cccccHHHHHHHHHhccccceEEEecccccCc---------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 75 4554432 245567888888887765421 22345667888899999998876664322 23333
Q ss_pred cccccccceEEEeecCCCCcccc--c-c-ccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCc
Q 035887 687 QQLHSSTRALELRRCEDSKSWNI--L-S-IADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSR 761 (886)
Q Consensus 687 ~~~~~~L~~L~l~~~~~~~~~~~--~-~-l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 761 (886)
...+++|+.|++.+|-..+.-.. . . -...++|+.|.+.++.-...--.... ......+.|..|.|++|..
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la-----~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA-----ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH-----HHHhcchhhHHhcCCcccc
Confidence 34456899999998853221111 0 1 12357889988877632221000000 0111368999999999954
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0085 Score=72.43 Aligned_cols=173 Identities=17% Similarity=0.130 Sum_probs=93.4
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.+.|.+..++++.+++.- ...+.|.++|++|+||||+|+.+++.. ...| +.+..+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999999988877642 134568899999999999999999876 2222 223221
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-------------hhhhccCCCCCCCCCCcEEEE-
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------DLAKLGVPFPAISKNASKIVF- 287 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~gs~iii- 287 (886)
.+. .... ......+...+.......+.+|++||++... ....+...+......+..++|
T Consensus 247 ~i~----~~~~---g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 247 EIM----SKYY---GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred HHh----cccc---cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 111 0000 1112222223333344567899999985310 111222222111123344454
Q ss_pred EcCChh-hhhcc----CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 288 TTRLEN-VCGLM----ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 288 TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
||.... +...+ .-...+.+...+.++-.++++..........+. ....+++.+.|.--+
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ga 383 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVGA 383 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCHH
Confidence 454432 11111 113467888888888888888655332211111 246677888886543
No 204
>PRK06921 hypothetical protein; Provisional
Probab=96.98 E-value=0.0018 Score=67.45 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV 214 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 214 (886)
....+.++|..|+|||+||..+++... ......++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456789999999999999999999872 221455677764
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.98 E-value=0.0086 Score=57.33 Aligned_cols=137 Identities=14% Similarity=0.171 Sum_probs=74.5
Q ss_pred cchhhHHHHHHHHhcCCce-EEEEEcCCCchhHHHHHHHHHhhccCC-----------------CCCCeEEEEEeCCC--
Q 035887 158 GLDSTFDKVWRCLIQEQVG-IIGLHGMGGVGKTTLLTQINNKFLDAP-----------------NNFEVVIWVVVSKD-- 217 (886)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~F~~~~wv~~s~~-- 217 (886)
|-+...+.+.+.+..++.+ .+.++|+.|+||+|+|..+.+...-.. ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777888888777654 689999999999999999888652111 11222334433222
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChhh
Q 035887 218 -MQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLENV 294 (886)
Q Consensus 218 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v 294 (886)
..++++. ++.+.+.... ..+++=++|+||++. ......+...+- .....+.+|++|++..-
T Consensus 81 ~i~i~~ir-~i~~~~~~~~--------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP--------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITNNPSK 144 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS---------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES-GGG
T ss_pred hhhHHHHH-HHHHHHHHHH--------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEECChHH
Confidence 2232222 3333332210 123566889999975 344444444443 44567888888887652
Q ss_pred --hhccCccceEEccCCC
Q 035887 295 --CGLMETQKKFKVECLG 310 (886)
Q Consensus 295 --~~~~~~~~~~~l~~L~ 310 (886)
....+....+.+.++|
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 2333344566776654
No 206
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.044 Score=58.46 Aligned_cols=174 Identities=8% Similarity=0.093 Sum_probs=93.6
Q ss_pred hHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC-CCC-C---e--EEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 162 TFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP-NNF-E---V--VIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F-~---~--~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
..+.+.+.+..+++ ..+.+.|+.|+||+++|+.+.....-.. ..- . | +-++..+..+|+..+... ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~-----~~ 84 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI-----DN 84 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc-----cC
Confidence 45567777776654 5777999999999999999887652100 000 0 0 000000011111000000 00
Q ss_pred CCCCCHHHHHHHHHHHh-----ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCCh-hhh-hccCccceE
Q 035887 234 LENRSLEEKASGIFKIL-----SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLE-NVC-GLMETQKKF 304 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v~-~~~~~~~~~ 304 (886)
.....++..+ +.+.+ .+++=++|+|+++. ......+...+- ....++.+|++|.+. .+. ...+....+
T Consensus 85 -~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 85 -KDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred -CCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0112222221 22222 24556888999974 333444433333 334456666666654 333 323445789
Q ss_pred EccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 305 KVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 305 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
.+.+++.++..+.+....... ...+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 999999999998888764211 113566788999999644
No 207
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.95 E-value=0.0033 Score=62.14 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHH
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE-----NRSLEEKASGIFK 248 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~~ 248 (886)
++||.++|+.|+||||.+.+++... ..+ -..+..++.... ....+-++..++.++.+. ..+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999998887 322 556777776432 356667788888888663 2234444443333
Q ss_pred HhccCc-EEEEEccc
Q 035887 249 ILSKKK-FLLLLDDI 262 (886)
Q Consensus 249 ~l~~k~-~LlVlDdv 262 (886)
.++.++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 344444 47777765
No 208
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.028 Score=60.19 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
...+.++|..|+|||+||..+++... ..-..++|+++. +++..+...-. ....+.. .. .+.+. .-
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~------~l~~~l~~~~~-~~~~~~~---~~-~~~l~-~~ 247 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTAD------ELIEILREIRF-NNDKELE---EV-YDLLI-NC 247 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHH------HHHHHHHHHHh-ccchhHH---HH-HHHhc-cC
Confidence 37799999999999999999999872 223467777653 23333322111 1011111 11 22222 22
Q ss_pred EEEEEccccch--hhh--hhccCCCCCCCCCCcEEEEEcCC
Q 035887 255 FLLLLDDIWER--VDL--AKLGVPFPAISKNASKIVFTTRL 291 (886)
Q Consensus 255 ~LlVlDdv~~~--~~~--~~l~~~~~~~~~~gs~iiiTtR~ 291 (886)
=|||+||+... .+| ..+...+......+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999532 222 22322222112234568888875
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.93 E-value=0.0053 Score=65.71 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=65.7
Q ss_pred hHHHHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCe-EEEEEeCCC-CCHHHHHHHHHHHhCCCC-CC
Q 035887 162 TFDKVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEV-VIWVVVSKD-MQLESVQEKIGERIGFLE-NR 237 (886)
Q Consensus 162 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~-~~ 237 (886)
...++++.+.. +.-.-+.|+|..|+|||||++.+.+... ..+-+. ++|+.+.+. ..+.++.+.+...+.... ..
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34557777764 4556779999999999999999988762 223344 467666654 578888888888776543 11
Q ss_pred CHHH------HHHHHHHHh--ccCcEEEEEcccc
Q 035887 238 SLEE------KASGIFKIL--SKKKFLLLLDDIW 263 (886)
Q Consensus 238 ~~~~------~~~~l~~~l--~~k~~LlVlDdv~ 263 (886)
.... ....+.+++ +++.++||+|++-
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1111 111222333 4799999999985
No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.93 E-value=0.0069 Score=74.14 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=44.6
Q ss_pred CccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+.... ...-...+.+.++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 46899999999999888641 14578899999999999999999876 22223445555554
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.0037 Score=63.76 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=51.1
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHH
Q 035887 163 FDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLE 240 (886)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (886)
+..+.++..+ .....+.++|.+|+|||+||..+++... ..-..++++++ .++...+-.... ....+..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~------~~l~~~l~~~~~-~~~~~~~ 154 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITV------ADIMSAMKDTFS-NSETSEE 154 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEH------HHHHHHHHHHHh-hccccHH
Confidence 4444444433 2345788999999999999999999872 23345666643 444444443332 1111222
Q ss_pred HHHHHHHHHhccCcEEEEEccccc
Q 035887 241 EKASGIFKILSKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ~~~~~l~~~l~~k~~LlVlDdv~~ 264 (886)
.+.+.+. +.=+||+||+..
T Consensus 155 ----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 155 ----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred ----HHHHHhc-cCCEEEEeCCCC
Confidence 2333344 345888899963
No 212
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.88 E-value=0.011 Score=66.69 Aligned_cols=175 Identities=18% Similarity=0.072 Sum_probs=91.3
Q ss_pred CccccchhhHHHHHHHHh---c-------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLI---Q-------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESV 223 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (886)
+++.|.+..++.+.+... . ...+-|.++|++|.|||.+|+.+.+.. ...| +-+.++ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 356787766665554221 1 234668899999999999999999986 2222 122211 11
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchhh--------------hhhccCCCCCCCCCCcEEEEEc
Q 035887 224 QEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERVD--------------LAKLGVPFPAISKNASKIVFTT 289 (886)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~~gs~iiiTt 289 (886)
.. ... ..+...+...+...-...+++|++|+++.... ...+...+. ....+--||.||
T Consensus 296 ~~----~~v---Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~vIaTT 367 (489)
T CHL00195 296 FG----GIV---GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVFVVATA 367 (489)
T ss_pred cc----ccc---ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceEEEEec
Confidence 11 000 11222222222222235789999999963210 001111111 112233355566
Q ss_pred CChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 290 RLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 290 R~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
.+... .+.-.-+..+.++..+.++-.++|+.+.......... ......+++.+.|.--|
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFSGA 431 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCCHH
Confidence 65432 1211224578899889999999999887543211101 11245677777766433
No 213
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.87 E-value=0.011 Score=71.31 Aligned_cols=102 Identities=25% Similarity=0.273 Sum_probs=59.6
Q ss_pred CCccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESV 223 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (886)
...++|-+..++.+.+.+... ...++.++|+.|+|||+||+.++... +...+.++.++-.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~-- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKH-- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcc--
Confidence 345789998888888887631 23468899999999999999998876 2234555554422211
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhccCc-EEEEEccccc
Q 035887 224 QEKIGERIGFLENRSLEEKASGIFKILSKKK-FLLLLDDIWE 264 (886)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~ 264 (886)
.+...++.+...-..+....+.+.++.++ -+++||+++.
T Consensus 525 --~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 525 --TVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred --cHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhh
Confidence 12222222211000001122334444444 4999999973
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=96.85 E-value=0.004 Score=64.65 Aligned_cols=73 Identities=19% Similarity=0.114 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
...+.|+|++|+|||+||..+.... . .....+.++++ .++...+...... .. ....+.+. ..+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a-~--~~G~~v~~~~~------~~l~~~l~~a~~~---~~---~~~~~~~~-~~~~ 165 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA-V--RAGIKVRFTTA------ADLLLQLSTAQRQ---GR---YKTTLQRG-VMAP 165 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH-H--HcCCeEEEEeH------HHHHHHHHHHHHC---Cc---HHHHHHHH-hcCC
Confidence 4567899999999999999998775 2 12234445542 2333333222111 01 11222222 2345
Q ss_pred EEEEEcccc
Q 035887 255 FLLLLDDIW 263 (886)
Q Consensus 255 ~LlVlDdv~ 263 (886)
-++|+||+.
T Consensus 166 dlLiiDdlg 174 (259)
T PRK09183 166 RLLIIDEIG 174 (259)
T ss_pred CEEEEcccc
Confidence 699999996
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.84 E-value=0.0099 Score=72.46 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=38.0
Q ss_pred CCccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 153 EPTIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999988887631 12478899999999999999998765
No 216
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.063 Score=57.12 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=94.3
Q ss_pred hHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccC------------------CCCCCeEEEEEeCCCCCHHH
Q 035887 162 TFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDA------------------PNNFEVVIWVVVSKDMQLES 222 (886)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~F~~~~wv~~s~~~~~~~ 222 (886)
..+++.+.+..+++ ..+.+.|+.|+||+++|+.+.....-. ..|.|. .|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC-----
Confidence 45667777766654 578899999999999999987765210 112221 12211000
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHh-----ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCCh-hh
Q 035887 223 VQEKIGERIGFLENRSLEEKASGIFKIL-----SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLE-NV 294 (886)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v 294 (886)
......++.. .+.+.+ .+++=++|+|+++. ......+...+- ....++.+|++|.+. .+
T Consensus 85 -----------~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 85 -----------GKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred -----------CCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhC
Confidence 0011222222 122222 23445888899874 334444433333 334456666666654 33
Q ss_pred -hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 295 -CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 295 -~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
....+....+.+.+++.+++.+.+.... . + .+..++..++|.|+.+..+
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHHcC---C----c----hHHHHHHHcCCCHHHHHHH
Confidence 3334456789999999999998886531 1 1 1457789999999987544
No 217
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.046 Score=64.04 Aligned_cols=104 Identities=21% Similarity=0.329 Sum_probs=64.4
Q ss_pred CccccchhhHHHHHHHHhc---------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ---------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQ 224 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (886)
..++|-+..++.+.+.+.. ....+....|+.|||||.||+.+.... -+.=+..+-+..|.-. --
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~----Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYM----EK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHH----HH
Confidence 4679999999999998863 135677889999999999999998876 1111334444333321 12
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhccCcE-EEEEccccc
Q 035887 225 EKIGERIGFLENRSLEEKASGIFKILSKKKF-LLLLDDIWE 264 (886)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 264 (886)
+++.+-+|.+...-.-+---.|-+..++++| +|.||++..
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhh
Confidence 2344445554411000012235556677888 777899973
No 218
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0069 Score=67.79 Aligned_cols=184 Identities=14% Similarity=0.149 Sum_probs=106.3
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
+++||-+.....|.+.+..++. .-....|+-|+||||+|+.+....--.. + .....++.-..-++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhhhcCCc
Confidence 3579999999999999987653 4566899999999999999887651001 0 11122222222233322200
Q ss_pred CCC---CCCHHHHHHHHHHHh--------ccCcEEEEEcccc--chhhhhhccCCCCCCCCCCcEEEE-EcCChhh-hhc
Q 035887 233 FLE---NRSLEEKASGIFKIL--------SKKKFLLLLDDIW--ERVDLAKLGVPFPAISKNASKIVF-TTRLENV-CGL 297 (886)
Q Consensus 233 ~~~---~~~~~~~~~~l~~~l--------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~~gs~iii-TtR~~~v-~~~ 297 (886)
... +.--...++.+++.. +++.=+.++|+|. +...|..+...+- .....-+.|. ||-...+ ...
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCchhh
Confidence 000 000011222333332 2344488899997 3456666655554 2233444444 4444444 344
Q ss_pred cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh
Q 035887 298 METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL 349 (886)
Q Consensus 298 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 349 (886)
.+..+.|.++.++.++-...+...+..+..... .+....|++..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 556688999999999999999888865543222 3445566666666443
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.79 E-value=0.00054 Score=66.61 Aligned_cols=74 Identities=27% Similarity=0.340 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
+..-+.++|..|+|||.||..+.+... ..-..+.|+++ .+++..+-..-. .....+ +.+.+. +
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~~v~f~~~------~~L~~~l~~~~~---~~~~~~----~~~~l~-~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI---RKGYSVLFITA------SDLLDELKQSRS---DGSYEE----LLKRLK-R 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEH------HHHHHHHHCCHC---CTTHCH----HHHHHH-T
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc---cCCcceeEeec------Cceecccccccc---ccchhh----hcCccc-c
Confidence 446789999999999999999998872 23345677754 344444432211 112222 222333 3
Q ss_pred cEEEEEccccc
Q 035887 254 KFLLLLDDIWE 264 (886)
Q Consensus 254 ~~LlVlDdv~~ 264 (886)
-=||||||+..
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 45788999963
No 220
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.016 Score=59.26 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhc-cCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFL-DAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
-++|.++||+|.|||+|++.++.... +..+.+....-+.++ -..++.+.... ..+....+-++|.+.++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsE----SgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSE----SGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhh----hhhHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999872 223344434444332 22333333222 2344455666677777765
Q ss_pred cEE--EEEccccc
Q 035887 254 KFL--LLLDDIWE 264 (886)
Q Consensus 254 ~~L--lVlDdv~~ 264 (886)
..| +.+|.|..
T Consensus 249 ~~lVfvLIDEVES 261 (423)
T KOG0744|consen 249 GNLVFVLIDEVES 261 (423)
T ss_pred CcEEEEEeHHHHH
Confidence 543 34688864
No 221
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.74 E-value=0.0051 Score=59.06 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=31.4
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
++.|+|++|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999998887 23456788888765543
No 222
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.73 E-value=0.022 Score=68.84 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=94.0
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.+.|.+..+++|.+.+.- ...+-|.++|++|.|||++|+.+++.. ...| +.++..
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 467888888777776531 134558899999999999999999986 2233 222211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh--------------hhhhccCCCCC-CCCCCcEEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV--------------DLAKLGVPFPA-ISKNASKIV 286 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~-~~~~gs~ii 286 (886)
++ +...- ..+...+...+...-+..+.+|++|+++... ....+...+.. ....+--||
T Consensus 522 ~l----~~~~v---Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 522 EI----LSKWV---GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred HH----hhccc---CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 11 11111 1122222222233334578999999985320 01112111110 112334455
Q ss_pred EEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 287 FTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 287 iTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
.||...+.... . .-+..+.++..+.++-.++|+.+..+......-+ ...+++.+.|.-
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 56765543221 1 2346788999999999999987664332222222 355677787764
No 223
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.73 E-value=0.0026 Score=60.60 Aligned_cols=100 Identities=32% Similarity=0.476 Sum_probs=50.1
Q ss_pred hhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc--cccCccCCCEEeccC
Q 035887 512 RRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS--GVSKLVSLQYLNLSE 589 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~--~i~~L~~L~~L~L~~ 589 (886)
...+++.+|.+..++..+.++.|.+|.+..|.+..+.+..-.-+++|..|.|.+| .+..+-+ .+..++.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecC
Confidence 3344555555555555555555555555555555555444444455555555555 4433321 123345555555555
Q ss_pred CCccccchh----hhccCCCcEeeccc
Q 035887 590 TSIKELPHE----LKALTKLKCLNLEY 612 (886)
Q Consensus 590 ~~i~~LP~~----i~~L~~L~~L~l~~ 612 (886)
|.++..+.- +.++++|++||+..
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 555544322 44555555555544
No 224
>PRK06526 transposase; Provisional
Probab=96.66 E-value=0.0028 Score=65.31 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
+...+.|+|++|+|||+||..+..... ..-..+.|++ ..++...+..... ... ....+.+ + .+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~---~~g~~v~f~t------~~~l~~~l~~~~~---~~~---~~~~l~~-l-~~ 159 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC---QAGHRVLFAT------AAQWVARLAAAHH---AGR---LQAELVK-L-GR 159 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH---HCCCchhhhh------HHHHHHHHHHHHh---cCc---HHHHHHH-h-cc
Confidence 345688999999999999999988762 1222344433 3344444433221 111 1122222 2 23
Q ss_pred cEEEEEccccc
Q 035887 254 KFLLLLDDIWE 264 (886)
Q Consensus 254 ~~LlVlDdv~~ 264 (886)
.-+||+||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 45899999963
No 225
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.66 E-value=0.027 Score=58.78 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=35.7
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHH
Q 035887 162 TFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQ 224 (886)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (886)
-++++..++..+ .-|.+.|++|+|||++|+.+.... . ...+.++++...+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---D---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---C---CCEEEEeCCccCCHHHHh
Confidence 344455555432 355689999999999999998754 2 234566666665555554
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.65 E-value=0.0022 Score=68.22 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=40.4
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999875 245889999999999999999999987
No 227
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.00098 Score=66.32 Aligned_cols=61 Identities=28% Similarity=0.417 Sum_probs=26.7
Q ss_pred CccCCCEEeccCC--Ccc-ccchhhhccCCCcEeecccccc--ccccccccccCCCCCCEEEeccCCC
Q 035887 578 KLVSLQYLNLSET--SIK-ELPHELKALTKLKCLNLEYTRY--LQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 578 ~L~~L~~L~L~~~--~i~-~LP~~i~~L~~L~~L~l~~~~~--l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
.|++|++|.++.| .+. .++.-..++++|++|++++|+. ++++++ +..+.+|..|++++|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCCc
Confidence 3445555555554 222 3333334445555555555531 122332 34444455555555443
No 228
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.63 E-value=0.017 Score=58.92 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCC------CeEEEEEeCCCCCHHHHHHHHHHHhCCC-----------CC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF------EVVIWVVVSKDMQLESVQEKIGERIGFL-----------EN 236 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----------~~ 236 (886)
.-.++.|+|++|+|||++|.++.... .... ..++|++....++...+. ++++..... ..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999988765 1223 578999988777765544 333332211 13
Q ss_pred CCHHHHHHHHHHHhc---c-CcEEEEEcccc
Q 035887 237 RSLEEKASGIFKILS---K-KKFLLLLDDIW 263 (886)
Q Consensus 237 ~~~~~~~~~l~~~l~---~-k~~LlVlDdv~ 263 (886)
.+.+++...+.+... . +.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 345555555555443 3 44588888874
No 229
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.09 Score=56.65 Aligned_cols=164 Identities=9% Similarity=0.059 Sum_probs=94.6
Q ss_pred hHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhcc---C----------------CCCCCeEEEEEeCCCCCHH
Q 035887 162 TFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLD---A----------------PNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---~----------------~~~F~~~~wv~~s~~~~~~ 221 (886)
.-+++.+.+..+++ ..+.+.|+.|+||+|+|..+.....- . ..|-|. .++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc----
Confidence 45667777776654 57779999999999999997776520 0 112221 11210000
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHh-----ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChh-
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKIL-----SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLEN- 293 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~- 293 (886)
......++..+ +.+.+ .+++=++|+|+++. ...-..+...+- ....++.+|++|.+.+
T Consensus 85 ------------~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 85 ------------KSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPAR 150 (334)
T ss_pred ------------cccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhh
Confidence 00112222222 22222 24566889999874 333333433333 3344666666666543
Q ss_pred hh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 294 VC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 294 v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
+. ...+..+.+.+.+++.+++.+.+....+. + .+.+..++..++|.|..+.
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 43 33344567899999999998887654221 1 2336788999999997554
No 230
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.62 E-value=0.0058 Score=64.67 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++-|+|++|+||||||.++.... ...-..++|++..+.++.. .+++++... ..+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999988776 2334678899877666553 345554332 44556666666
Q ss_pred HHHhc-cCcEEEEEcccc
Q 035887 247 FKILS-KKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~-~k~~LlVlDdv~ 263 (886)
...++ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 356689999885
No 231
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.61 E-value=0.0046 Score=75.09 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHHhc---------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ---------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...++|-+..++.+.+.+.. ....++.++|+.|+|||.+|+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888753 124578999999999999999988776
No 232
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.61 E-value=0.0016 Score=59.06 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.7
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.61 E-value=0.0054 Score=65.13 Aligned_cols=117 Identities=22% Similarity=0.171 Sum_probs=66.6
Q ss_pred cchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 158 GLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 158 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
+|........+++.. ....-+.++|..|+|||.||..+++... ..-..+.+++++ .++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEHH------HHHHHHHHHHhc
Confidence 455555555566653 1346789999999999999999999982 333446677653 455555444422
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhh--hccC-CCCCCCCCCcEEEEEcCC
Q 035887 234 LENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLA--KLGV-PFPAISKNASKIVFTTRL 291 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~-~~~~~~~~gs~iiiTtR~ 291 (886)
. +..+. + +.+ .+-=||||||+.- ..+|. ++.. .+...-..+..+|+||--
T Consensus 206 ~---~~~~~---l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 G---SVKEK---I-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred C---cHHHH---H-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 22222 2 122 2456899999963 23443 2322 222011244567777764
No 234
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.61 E-value=0.0057 Score=64.80 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++... ..+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999988776 2345678899887776653 344444322 44556666666
Q ss_pred HHHhcc-CcEEEEEcccc
Q 035887 247 FKILSK-KKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~-k~~LlVlDdv~ 263 (886)
...++. ..-++|+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 555543 56689999874
No 235
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.60 E-value=0.0082 Score=60.49 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQE 225 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 225 (886)
.-+++.|+|++|+|||++|.++.... ......++|++... +....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 35799999999999999999988876 23457899999876 66555544
No 236
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.59 E-value=0.007 Score=61.76 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESV 223 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (886)
.-.++.|+|.+|+|||++|.+++... ......++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHH
Confidence 45799999999999999999998876 2335778999987 5555444
No 237
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.58 E-value=0.0047 Score=60.79 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=64.7
Q ss_pred cchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeC----CC--CCHHH-------HH
Q 035887 158 GLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVS----KD--MQLES-------VQ 224 (886)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s----~~--~~~~~-------~~ 224 (886)
.+..+....++.|. +..++.+.|++|.|||.||....-+. -..+.|+.++++.-. +. |-..+ .+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34556667777777 56799999999999999999988776 334889988887521 11 11111 11
Q ss_pred HHHHHHhCCCC-CCCHHHHHHH------HHHHhccC---cEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCCh
Q 035887 225 EKIGERIGFLE-NRSLEEKASG------IFKILSKK---KFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLE 292 (886)
Q Consensus 225 ~~i~~~l~~~~-~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~ 292 (886)
..+...+..-. ....+.+.+. --.+++|+ ..++++|++.+ ..++..+.. ..+.+||||++--..
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT----R~g~~skii~~GD~~ 156 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT----RIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT----TB-TT-EEEEEE---
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc----ccCCCcEEEEecCce
Confidence 11222221110 1122222210 01233443 46999999975 355665533 456899999986543
No 238
>PRK04296 thymidine kinase; Provisional
Probab=96.57 E-value=0.0032 Score=62.10 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=63.3
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHhc
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE----NRSLEEKASGIFKILS 251 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~l~~~l~ 251 (886)
.++.|+|+.|.||||+|..+..+. ..+...++.+. ..++.......++.+++... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 478899999999999999998887 22334444442 11222222334555555322 1234455555555 33
Q ss_pred cCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChh
Q 035887 252 KKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLEN 293 (886)
Q Consensus 252 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~ 293 (886)
++.-+||+|.+.- .++..++... ....|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~---l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEV---LDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHH---HHHcCCeEEEEecCcc
Confidence 3455899999853 2223333222 1346788999999854
No 239
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.11 Score=55.79 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=56.9
Q ss_pred cCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCC-hhhh-hccCccceEEccCCChHHHHHHHHHHhcCCcC
Q 035887 252 KKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRL-ENVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETL 327 (886)
Q Consensus 252 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 327 (886)
+++=++|+|+++. ......+...+- ....++.+|++|.+ ..+. ...+....+.+.+++.++..+.+...- .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-
Confidence 3445888899974 344444444443 34456666665555 4443 333445789999999999998887641 1
Q ss_pred CCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 328 GSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 328 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
+. ...++..++|.|..+..+.
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHHH
Confidence 11 2335778899997665443
No 240
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.56 E-value=0.0097 Score=61.24 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPN----NFEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.-.++.|+|.+|+|||++|.+++... .... ....++|++....++...+. ++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 45799999999999999999987554 1111 13689999988877765443 344443
No 241
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.051 Score=60.49 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=88.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
...-|.+||++|.|||-||++|+|.. ...| ++|... +++.... ..++..+....++.=..-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV-------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV-------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh-------hhHHHHHHHHHHHhhcCC
Confidence 35568899999999999999999987 3344 444332 1222111 223333333333333457
Q ss_pred cEEEEEccccch-------h------hhhhccCCCCC-CCCCCcEEEEEcCChhhhhc--c---CccceEEccCCChHHH
Q 035887 254 KFLLLLDDIWER-------V------DLAKLGVPFPA-ISKNASKIVFTTRLENVCGL--M---ETQKKFKVECLGDNEA 314 (886)
Q Consensus 254 ~~LlVlDdv~~~-------~------~~~~l~~~~~~-~~~~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~ 314 (886)
+++|+||.++.. . ...++..-+.. ....|--||-.|...++-+. + .-++..-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998631 1 12222222210 23345566777776665221 2 2245677888889999
Q ss_pred HHHHHHHhcC--CcCCCCCChHHHHHHHHHHcCCch
Q 035887 315 WELFLQKVGE--ETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 315 ~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
..+++..... .....+-++.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9999888863 222334456665553 3455654
No 242
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.55 E-value=0.013 Score=60.75 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhc-c--CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFL-D--APNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.-.+.=|+|.+|+|||.|+.+++-... . ..+.-..++|++....|...++. +|++..+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 346889999999999999988765541 1 11223579999999999988775 56766543
No 243
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.047 Score=63.45 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=99.9
Q ss_pred ccccchhhH---HHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHH
Q 035887 155 TIVGLDSTF---DKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLES 222 (886)
Q Consensus 155 ~~vGr~~~~---~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (886)
++.|-|+.+ ++++++|.+. -++=+.++|++|.|||-||++++... . +-|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH-----
Confidence 467877654 5556666652 24567899999999999999999887 2 234444432
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccch-----------------hhhhhccCCCCCCCCCCcE
Q 035887 223 VQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWER-----------------VDLAKLGVPFPAISKNASK 284 (886)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~~~gs~ 284 (886)
+.++.+.... ...+..+...- ...+.++.+|+++.. ..+.++..-.......+.-
T Consensus 379 ---EFvE~~~g~~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 ---EFVEMFVGVG----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred ---HHHHHhcccc----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 1222221110 12222222222 246789998887531 1233333222211112222
Q ss_pred EEE-EcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 285 IVF-TTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 285 iii-TtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
|++ +|...++.+. + .-+..+.++.-+...-.++|+.++..-.. ..+..++++ |+...-|.+=|.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHH
Confidence 333 5555555221 2 22467888888999999999999865432 134566677 888888887664
No 244
>PRK04132 replication factor C small subunit; Provisional
Probab=96.52 E-value=0.051 Score=64.99 Aligned_cols=151 Identities=12% Similarity=0.091 Sum_probs=92.0
Q ss_pred CCCchhHHHHHHHHHhhccCCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-cCcEEEEEc
Q 035887 183 MGGVGKTTLLTQINNKFLDAPNNF-EVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILS-KKKFLLLLD 260 (886)
Q Consensus 183 ~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlD 260 (886)
|.++||||+|..++++.. . ..+ ..++-+++|+..+...+...+-+...... +. .+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g-~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-G-ENWRHNFLELNASDERGINVIREKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-c-ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 779999999999999861 1 222 35777888876555544332222111110 11 245799999
Q ss_pred cccch--hhhhhccCCCCCCCCCCcEEEEEcCCh-hhh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHH
Q 035887 261 DIWER--VDLAKLGVPFPAISKNASKIVFTTRLE-NVC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPEL 336 (886)
Q Consensus 261 dv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 336 (886)
+++.. .....+...+- ......++|.+|.+. .+. ...+....+++.+++.++....+...+....... -.+.
T Consensus 638 EaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHHH
Confidence 99853 34444443333 223455666655543 332 2223457899999999999888877664332111 1456
Q ss_pred HHHHHHHcCCchhHHHH
Q 035887 337 AKTVAKECCGLPLALIT 353 (886)
Q Consensus 337 ~~~i~~~c~glPlai~~ 353 (886)
...|++.++|.+..+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 78999999998865543
No 245
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.50 E-value=0.0079 Score=73.38 Aligned_cols=102 Identities=22% Similarity=0.341 Sum_probs=59.7
Q ss_pred CCccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESV 223 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (886)
...++|-+..++.+.+.+... ...++.++|+.|+|||+||+.+.+... ..-...+-+..+.-.+...
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~---~~~~~~~~~d~s~~~~~~~- 583 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF---GSEDAMIRLDMSEYMEKHT- 583 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCccceEEEEchhcccccc-
Confidence 356899999999998887531 134677999999999999999988761 1122344444443222111
Q ss_pred HHHHHHHhCCCC---CCCHHHHHHHHHHHhccCcE-EEEEccccc
Q 035887 224 QEKIGERIGFLE---NRSLEEKASGIFKILSKKKF-LLLLDDIWE 264 (886)
Q Consensus 224 ~~~i~~~l~~~~---~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 264 (886)
+..-++.+. ..+. ...+.+.++.+++ +++||+++.
T Consensus 584 ---~~~l~g~~~gyvg~~~---~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 584 ---VSKLIGSPPGYVGYNE---GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ---HHHhcCCCCcccCcCc---cchHHHHHHhCCCeEEEECChhh
Confidence 111122221 1111 1124455555654 888999973
No 246
>PRK09354 recA recombinase A; Provisional
Probab=96.50 E-value=0.0079 Score=64.22 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++-|+|++|+||||||.++.... ...-..++||.....++.. .+++++... ..+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999988776 2345678999988777753 455555432 44556666666
Q ss_pred HHHhcc-CcEEEEEcccc
Q 035887 247 FKILSK-KKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~-k~~LlVlDdv~ 263 (886)
...++. ..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 555543 55689999875
No 247
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.48 E-value=0.011 Score=60.96 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC-CeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHH--
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF-EVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLE-- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~-- 240 (886)
.+-.-++|.|..|+|||||++.+++.. +.+| +.++++-+.+.. ...++.+++.+.=.... +....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 355789999999999999999999987 2334 456666666554 45555555544311111 11111
Q ss_pred ----HHHHHHHHHh--c-cCcEEEEEccccc
Q 035887 241 ----EKASGIFKIL--S-KKKFLLLLDDIWE 264 (886)
Q Consensus 241 ----~~~~~l~~~l--~-~k~~LlVlDdv~~ 264 (886)
...-.+.+++ + ++.+|+++||+-.
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122355665 3 7899999999853
No 248
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.44 E-value=0.099 Score=52.01 Aligned_cols=170 Identities=14% Similarity=0.197 Sum_probs=96.7
Q ss_pred CccccchhhHHH---HHHHHhcC------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHH
Q 035887 154 PTIVGLDSTFDK---VWRCLIQE------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQ 224 (886)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (886)
+++||.+..+.+ |++.|.+. ..+-|..+|++|.|||-+|+++.+.. +-.| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk----at~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK----ATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec----hHHH-
Confidence 357898876654 66777652 57889999999999999999999987 2223 1111 1111
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhc-cCcEEEEEccccch--------------hhhhhccCCCCC-CCCCCcEEEEE
Q 035887 225 EKIGERIGFLENRSLEEKASGIFKILS-KKKFLLLLDDIWER--------------VDLAKLGVPFPA-ISKNASKIVFT 288 (886)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~--------------~~~~~l~~~~~~-~~~~gs~iiiT 288 (886)
|.+..| +....+..+.+.-+ .-++++++|.++-. +....+..-+.. ..+.|-..|-.
T Consensus 188 --iGehVG-----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 --IGEHVG-----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred --HHHHhh-----hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 222221 22333334444333 46899999988621 111111111110 23445556666
Q ss_pred cCChhhhhcc---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc
Q 035887 289 TRLENVCGLM---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL 347 (886)
Q Consensus 289 tR~~~v~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 347 (886)
|.+.+..+.. .-...|+..--+++|-.+++...+..-....... .+.++++.+|.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 7666653321 1124677777789999999988884332122222 45566666664
No 249
>PRK06762 hypothetical protein; Provisional
Probab=96.39 E-value=0.041 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 250
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.37 E-value=0.13 Score=55.71 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 160 DSTFDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456677777775 467899999999999999999999988
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.012 Score=60.74 Aligned_cols=75 Identities=27% Similarity=0.271 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKK 253 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 253 (886)
+..-+.++|.+|+|||.||.++.++. ...--.+.++++ .++..++....... .....|.+.+ .+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l---~~~g~sv~f~~~------~el~~~Lk~~~~~~------~~~~~l~~~l-~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL---LKAGISVLFITA------PDLLSKLKAAFDEG------RLEEKLLREL-KK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH---HHcCCeEEEEEH------HHHHHHHHHHHhcC------chHHHHHHHh-hc
Confidence 66778899999999999999999998 233455777754 34555554444321 1111222212 13
Q ss_pred cEEEEEccccc
Q 035887 254 KFLLLLDDIWE 264 (886)
Q Consensus 254 ~~LlVlDdv~~ 264 (886)
-=||||||+..
T Consensus 168 ~dlLIiDDlG~ 178 (254)
T COG1484 168 VDLLIIDDIGY 178 (254)
T ss_pred CCEEEEecccC
Confidence 34899999963
No 252
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00031 Score=69.75 Aligned_cols=100 Identities=29% Similarity=0.313 Sum_probs=67.6
Q ss_pred CCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccch--hhhccCCCcEe
Q 035887 531 CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPH--ELKALTKLKCL 608 (886)
Q Consensus 531 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~--~i~~L~~L~~L 608 (886)
+.+.+.|++.++.++.+. ...+|+.|.||.||-| .|+++. .+..|.+|+.|.|+.|.|..+-+ -+.+|++|++|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445667777777666553 3577888888888888 777775 47778888888888887776533 36677778887
Q ss_pred ecccccccccccc----ccccCCCCCCEEE
Q 035887 609 NLEYTRYLQKIPR----QLLCSFSGLEVLR 634 (886)
Q Consensus 609 ~l~~~~~l~~lp~----~~i~~l~~L~~L~ 634 (886)
-|..|+....-+. .++.-|++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776654333332 2355666676665
No 253
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.29 E-value=0.0064 Score=56.59 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=32.7
Q ss_pred ccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 157 VGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 157 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
||....++++.+.+.. ....-|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777777777777764 445667899999999999999998876
No 254
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.027 Score=65.91 Aligned_cols=153 Identities=19% Similarity=0.267 Sum_probs=88.4
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhcc--CCC--CCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLD--APN--NFEVVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~--~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
.++||++++.++++.|....-.--.++|.+|||||++|.-++.+... +-. ....++-.. +..-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~g~L 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------LGSL 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------HHHH
Confidence 46999999999999997643233347899999999999888877511 111 111111111 1111
Q ss_pred hCCCC-CCCHHHHHHHHHHHhc-cCcEEEEEccccchh----------hhhhccCCCCCCCCCCcEEEEEcCChhh----
Q 035887 231 IGFLE-NRSLEEKASGIFKILS-KKKFLLLLDDIWERV----------DLAKLGVPFPAISKNASKIVFTTRLENV---- 294 (886)
Q Consensus 231 l~~~~-~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~gs~iiiTtR~~~v---- 294 (886)
+.+.. .-+.++....+-+.++ .++..|++|.+.... +-..+..|-. ..+ .-+.|-.|...+.
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARG-eL~~IGATT~~EYRk~i 315 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARG-ELRCIGATTLDEYRKYI 315 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcC-CeEEEEeccHHHHHHHh
Confidence 11111 3455555555555444 458999999987421 1122222211 122 2344544443332
Q ss_pred ---hhccCccceEEccCCChHHHHHHHHHHh
Q 035887 295 ---CGLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 295 ---~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
+......+.+.+...+.+++...+....
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2333456789999999999999887654
No 255
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.27 E-value=0.027 Score=57.09 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45789999999999999999998876 23345788888765554
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.26 E-value=0.013 Score=69.73 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhc--------C-CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ--------E-QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|-+..++.|.+.+.. + ....+.++|+.|+|||++|+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998888763 1 24578899999999999999998876
No 257
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.24 E-value=0.026 Score=60.09 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDA---PNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.-+++-|+|++|+|||+|+.+++-..... ...-..++|++....|+..++. +++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 45788999999999999999876543111 1123479999999989888875 45666654
No 258
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.22 E-value=0.018 Score=55.85 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=64.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccC--C---CCCC--eEEEEEeCCCCCHHHHHHHHHHHhCCCC--------CCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDA--P---NNFE--VVIWVVVSKDMQLESVQEKIGERIGFLE--------NRS 238 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~---~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~ 238 (886)
.-.+++|+|+.|+|||||.+.+..+.-.+ . ..|. .+.|+ .+ .+.++.++... ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45789999999999999999986432011 1 1111 13332 22 34556665431 111
Q ss_pred H-HHHHHHHHHHhccC--cEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCChhhhhccCccceEEc
Q 035887 239 L-EEKASGIFKILSKK--KFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRLENVCGLMETQKKFKV 306 (886)
Q Consensus 239 ~-~~~~~~l~~~l~~k--~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 306 (886)
. +...-.+...+-.+ +=++++|+.-. ....+.+...+......|..||++|.+.+.... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 12222344555566 77888898743 222222222222111246678888888776542 4445554
No 259
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.14 Score=50.37 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=90.9
Q ss_pred ccc-chhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 156 IVG-LDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 156 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
++| .+..+++|.+.+.- .+.+-+.++|++|.|||-||+.|++.. .+.|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 455 46666666665531 256778899999999999999999875 2445666643 2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccch-------------hh---hhhccCCCC-CCCCCCc
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWER-------------VD---LAKLGVPFP-AISKNAS 283 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------------~~---~~~l~~~~~-~~~~~gs 283 (886)
-+++-|.+ ...+...+.-.- ..-+.+|++|.+++. +. .-++...+. -...+.-
T Consensus 217 lvqk~ige---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYIGE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHhhh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 22222211 111122221111 346788888988631 10 111112221 0234567
Q ss_pred EEEEEcCChhhhhc-----cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHH
Q 035887 284 KIVFTTRLENVCGL-----METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTV 340 (886)
Q Consensus 284 ~iiiTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i 340 (886)
|||.+|..-++.+. -..+..|+..+-+.+.-.++++-+...-+...--++..+|+++
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 88888876665332 2235678888888777777777665443322223444444433
No 260
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.17 Score=58.02 Aligned_cols=168 Identities=18% Similarity=0.136 Sum_probs=94.5
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
+++=|.++.+++|.+-+.- .+.+-|.++|++|.|||-+|++|+.+. . .-|++|...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 4556788888998887753 135678899999999999999999887 1 345665443
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-------------------hhhhccCCCCCCCCCC
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------------DLAKLGVPFPAISKNA 282 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------------~~~~l~~~~~~~~~~g 282 (886)
+++..-- ..+++.+.+...+.=+.++++|++|.+++.. -+.++-..-. ....+
T Consensus 740 ----ELLNMYV---GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~-~~s~~ 811 (953)
T KOG0736|consen 740 ----ELLNMYV---GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD-SSSQD 811 (953)
T ss_pred ----HHHHHHh---cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC-CCCCc
Confidence 1121111 2344444444444445689999999987520 1222211111 12333
Q ss_pred cEEEEEcCChhhhhc--cCc---cceEEccCCChHHHHHHHHHHhc-CCcCCCCCChHHHHHHHHHHcC
Q 035887 283 SKIVFTTRLENVCGL--MET---QKKFKVECLGDNEAWELFLQKVG-EETLGSHPDIPELAKTVAKECC 345 (886)
Q Consensus 283 s~iiiTtR~~~v~~~--~~~---~~~~~l~~L~~~e~~~lf~~~~~-~~~~~~~~~~~~~~~~i~~~c~ 345 (886)
-=||=.|..++..+. +.. ++-+.+++=+.+++..=..+..- +-....+-+ ..+|+++|.
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp 876 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCP 876 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCC
Confidence 345556666665322 222 35667777777776553333221 111112223 456777775
No 261
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.20 E-value=0.00069 Score=78.22 Aligned_cols=88 Identities=28% Similarity=0.283 Sum_probs=47.2
Q ss_pred hcCCCCCcEEEccCCCcccc--cCccccCccCCCEEeccCC--Ccccc----chhhhccCCCcEeecccccccccccccc
Q 035887 552 FDFMPSLKVLNLSKNRSLSQ--LPSGVSKLVSLQYLNLSET--SIKEL----PHELKALTKLKCLNLEYTRYLQKIPRQL 623 (886)
Q Consensus 552 ~~~l~~Lr~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~--~i~~L----P~~i~~L~~L~~L~l~~~~~l~~lp~~~ 623 (886)
...++.|+.|.+.++..+.. +-.....+.+|+.|+++++ .+... +.....+++|+.|++++|..+...--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467788888877765554 3344556777888887763 11111 1223445666777776665322221111
Q ss_pred c-cCCCCCCEEEeccCC
Q 035887 624 L-CSFSGLEVLRMLDCG 639 (886)
Q Consensus 624 i-~~l~~L~~L~l~~~~ 639 (886)
+ ..+++|++|.+.+|.
T Consensus 264 l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCS 280 (482)
T ss_pred HHhhCCCcceEccCCCC
Confidence 1 225566666655554
No 262
>PRK06696 uridine kinase; Validated
Probab=96.19 E-value=0.0064 Score=61.86 Aligned_cols=42 Identities=12% Similarity=0.265 Sum_probs=35.2
Q ss_pred cchhhHHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 158 GLDSTFDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 158 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|++-+++|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466677778777753 467899999999999999999999887
No 263
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.19 E-value=0.01 Score=67.17 Aligned_cols=72 Identities=28% Similarity=0.290 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc--
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILS-- 251 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-- 251 (886)
.-++..++|++|+||||||..+++.. -..++=|.+|+.-....+-..|...+... ..+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~-------------s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNH-------------SVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhc-------------cccccC
Confidence 45789999999999999999998765 23578888999888777777776665433 2232
Q ss_pred cCcEEEEEccccc
Q 035887 252 KKKFLLLLDDIWE 264 (886)
Q Consensus 252 ~k~~LlVlDdv~~ 264 (886)
+++.-||+|.++.
T Consensus 386 srP~CLViDEIDG 398 (877)
T KOG1969|consen 386 SRPVCLVIDEIDG 398 (877)
T ss_pred CCcceEEEecccC
Confidence 5788899999874
No 264
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.18 E-value=0.0082 Score=59.70 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=61.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCc
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKK 254 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 254 (886)
.+|.|+|+.|.||||++..+.... .......+++--.. .+.... ...++.+-.. ..+.....+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~v--g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPIEFVHES-KRSLINQREV--GLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcCCccccccC-ccceeeeccc--CCCccCHHHHHHHHhcCCc
Confidence 478999999999999999887766 22333333332111 110000 0011111110 1122345566777787778
Q ss_pred EEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhh
Q 035887 255 FLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENV 294 (886)
Q Consensus 255 ~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v 294 (886)
=.+++|++.+.+....+... ...|..|+.|+-...+
T Consensus 76 d~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcH
Confidence 89999999877665543222 1235557777765544
No 265
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0021 Score=64.02 Aligned_cols=106 Identities=31% Similarity=0.338 Sum_probs=61.2
Q ss_pred CCcceeeeecCccccccChhhhcCCCCCcEEEccCC--CcccccCccccCccCCCEEeccCCCccccc--hhhhccCCCc
Q 035887 531 CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKN--RSLSQLPSGVSKLVSLQYLNLSETSIKELP--HELKALTKLK 606 (886)
Q Consensus 531 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~--~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP--~~i~~L~~L~ 606 (886)
+..|..|.+.+..++.+.. |..|++|+.|++|.| .....++-..-++++|++|++++|+|+-+- ..+.++.||.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3344444444443333222 455677777777777 333445444555678888888888766421 2356677788
Q ss_pred Eeeccccccccccc---cccccCCCCCCEEEeccCC
Q 035887 607 CLNLEYTRYLQKIP---RQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 607 ~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~ 639 (886)
.|++.+|.. ..+- ..++.-+++|.+|+-.++.
T Consensus 120 ~Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSV-TNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCc-cccccHHHHHHHHhhhhccccccccC
Confidence 888888753 2221 2234556777777766543
No 266
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.044 Score=59.52 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=80.5
Q ss_pred ccccchhhHHHHHHHHhc-CCceE-EEEEcCCCchhHHHHHHHHHhhccCCC------------------CCCeEEEEEe
Q 035887 155 TIVGLDSTFDKVWRCLIQ-EQVGI-IGLHGMGGVGKTTLLTQINNKFLDAPN------------------NFEVVIWVVV 214 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~F~~~~wv~~ 214 (886)
.++|-+....++..+..+ ++.+- +.++|+.|+||||+|..+.+...-... ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777778888888774 44555 999999999999999999988721000 1234455555
Q ss_pred CCCCC---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh--hhhhccCCCCCCCCCCcEEEEEc
Q 035887 215 SKDMQ---LESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV--DLAKLGVPFPAISKNASKIVFTT 289 (886)
Q Consensus 215 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~gs~iiiTt 289 (886)
+.... ..+..+++.+...... ..++.-++++|+++... .-..+...+. .....+.+|++|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~--------------~~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~il~~ 146 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP--------------LEGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRFILIT 146 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC--------------CCCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEEEEEc
Confidence 54433 2333333333332211 03567789999997532 2223322222 344567777777
Q ss_pred CCh-hhhh-ccCccceEEccCCCh
Q 035887 290 RLE-NVCG-LMETQKKFKVECLGD 311 (886)
Q Consensus 290 R~~-~v~~-~~~~~~~~~l~~L~~ 311 (886)
... .+.. .-.....+++.+.+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred CChhhccchhhhcceeeecCCchH
Confidence 743 3322 122345667766333
No 267
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.13 E-value=0.018 Score=56.30 Aligned_cols=117 Identities=19% Similarity=0.232 Sum_probs=64.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE---eCCCCCHHHHH------HHHHHHhCCCC-------CC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV---VSKDMQLESVQ------EKIGERIGFLE-------NR 237 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~-------~~ 237 (886)
.-.+++|+|+.|.|||||++.++... ......+++. +.. .+..... .++++.++... ..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45689999999999999999998865 2233344432 221 1222211 12445554332 11
Q ss_pred C-HHHHHHHHHHHhccCcEEEEEccccc---hhhhhhccCCCCCCCCC-CcEEEEEcCChhhh
Q 035887 238 S-LEEKASGIFKILSKKKFLLLLDDIWE---RVDLAKLGVPFPAISKN-ASKIVFTTRLENVC 295 (886)
Q Consensus 238 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~-gs~iiiTtR~~~v~ 295 (886)
+ -+...-.+.+.+-..+-++++|+.-. ....+.+...+...... +..||++|.+.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 12223345666777888999998753 22223332222211122 66788888876654
No 268
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.12 E-value=0.0083 Score=63.50 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-...++|||++|.|||.+|+.+++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999997
No 269
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.07 E-value=0.047 Score=51.87 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE---------------------eCCCC--------------
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV---------------------VSKDM-------------- 218 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---------------------~s~~~-------------- 218 (886)
.-..+.++|+.|.||||+.+.+|... +. =...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45789999999999999999999987 21 12334431 11111
Q ss_pred -------CHHHHHHHHH---HHhCCCC--------CCCHHHHHHHHHHHhccCcEEEEEccc----cchhhhhhccCCCC
Q 035887 219 -------QLESVQEKIG---ERIGFLE--------NRSLEEKASGIFKILSKKKFLLLLDDI----WERVDLAKLGVPFP 276 (886)
Q Consensus 219 -------~~~~~~~~i~---~~l~~~~--------~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~l~~~~~ 276 (886)
...++.+... +..+... -..-++..-.|.+.+-+++-+|+-|.- +-...|+-+. .|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 1222222222 2222211 111222233455666678888888864 3333444332 222
Q ss_pred CCCCCCcEEEEEcCChhhhhccC
Q 035887 277 AISKNASKIVFTTRLENVCGLME 299 (886)
Q Consensus 277 ~~~~~gs~iiiTtR~~~v~~~~~ 299 (886)
..+..|+.|+++|-+.++...+.
T Consensus 182 einr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhcc
Confidence 24577999999999998876653
No 270
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.06 E-value=0.031 Score=55.03 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=60.6
Q ss_pred CccccchhhHHHHHHHHh----cCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLI----QEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
..++|.|..++.+++--. .....-|.+||.-|.||++|++++.+.. ....-. -|.|+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glr--LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY---ADEGLR--LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH---HhcCCe--EEEEcHH------------
Confidence 357999988888776433 3345678899999999999999999988 333333 3333221
Q ss_pred HhCCCCCCCHHHHHHHHHHHhc--cCcEEEEEcccc---chhhhhhccCCC
Q 035887 230 RIGFLENRSLEEKASGIFKILS--KKKFLLLLDDIW---ERVDLAKLGVPF 275 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~---~~~~~~~l~~~~ 275 (886)
+...+ ..|.+.|+ .+||+|+.||+. +......++..+
T Consensus 123 --------dl~~L-p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 123 --------DLATL-PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred --------HHhhH-HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 11111 12333333 589999999995 233455555444
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.05 E-value=0.0068 Score=67.96 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+++|.++.+++|++.|.. ..-+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 469999999999999942 466899999999999999999999877
No 272
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.04 E-value=0.013 Score=57.08 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV 213 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 213 (886)
...+|.+.|+.|+||||+|+.+++.. ...+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 45699999999999999999999987 34555555653
No 273
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.03 E-value=0.034 Score=55.19 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHH
Q 035887 163 FDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEK 242 (886)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 242 (886)
-.+.+..+...+-++..|.|++|.||||+++.+.... ... . ..++++. ....... .+.+..+... .+....
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~-~~~-g-~~v~~~a-pT~~Aa~----~L~~~~~~~a-~Ti~~~ 76 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL-EAA-G-KRVIGLA-PTNKAAK----ELREKTGIEA-QTIHSF 76 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH-HHT-T---EEEEE-SSHHHHH----HHHHHHTS-E-EEHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH-HhC-C-CeEEEEC-CcHHHHH----HHHHhhCcch-hhHHHH
Confidence 3444555544556788999999999999999988876 222 1 3344443 2222222 2333333221 111110
Q ss_pred HHHHHHH-h-----ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcC
Q 035887 243 ASGIFKI-L-----SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTR 290 (886)
Q Consensus 243 ~~~l~~~-l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR 290 (886)
....... . ..++-+||+|++.- ...+..+..... ..|.|+|+.-=
T Consensus 77 l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~---~~~~klilvGD 129 (196)
T PF13604_consen 77 LYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK---KSGAKLILVGD 129 (196)
T ss_dssp TTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS----T-T-EEEEEE-
T ss_pred HhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH---hcCCEEEEECC
Confidence 0000000 0 12345999999973 445655544433 35777777544
No 274
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.02 E-value=0.029 Score=60.43 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPN----NFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
.-.++-|+|++|+|||+++.+++... .... .-..++||+....|+...+. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 45788999999999999999988764 1111 11489999999888877765 3445554
No 275
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.02 E-value=0.086 Score=55.76 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++-|+|+.|+||||||..+.... ...-..++|+.....++.. .+++++... ..+.++..+.+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 35799999999999999999998876 2335678999988776654 344555433 44556666666
Q ss_pred HHHhccC-cEEEEEccccc
Q 035887 247 FKILSKK-KFLLLLDDIWE 264 (886)
Q Consensus 247 ~~~l~~k-~~LlVlDdv~~ 264 (886)
...++.. --++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 6666544 34888898864
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.01 E-value=0.029 Score=59.16 Aligned_cols=86 Identities=26% Similarity=0.310 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
...+|+|+|++|+||||++..+.... .....-..+..|+..... .....+....+.++.+. ..+..++...+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 45799999999999999999998876 222112356666653321 22333344444455443 3344444444443 2
Q ss_pred ccCcEEEEEccc
Q 035887 251 SKKKFLLLLDDI 262 (886)
Q Consensus 251 ~~k~~LlVlDdv 262 (886)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 346777753
No 277
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.01 E-value=0.028 Score=60.34 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=43.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhcc---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLD---APNNFEVVIWVVVSKDMQLESVQEKIGERIGFL 234 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 234 (886)
.-+++-|+|.+|+|||+|+.+++-.... ....-..++|++....|...++.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4578889999999999999988644311 012235789999999999888754 56666543
No 278
>PRK08233 hypothetical protein; Provisional
Probab=95.95 E-value=0.022 Score=55.87 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 279
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.94 E-value=0.026 Score=54.81 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=45.9
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCHHHHHH-HHHHH
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE-----NRSLEEKAS-GIFKI 249 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~-~l~~~ 249 (886)
++.++|++|+||||++..+.... . ..-..++.+...... ...+.+...++..+.+. ..+..+... .+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~-~--~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL-K--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-H--HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876 2 222244455543211 22333444444444321 234444332 33333
Q ss_pred hccCcEEEEEccccc
Q 035887 250 LSKKKFLLLLDDIWE 264 (886)
Q Consensus 250 l~~k~~LlVlDdv~~ 264 (886)
..+..-++|+|....
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 343443566776643
No 280
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.037 Score=59.53 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
+.++|+++|++|+||||++..++... . ..-..+..++.... ....+-++..++.++.+. ..+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998876 2 22234555554322 123333444555555443 345566665554433
Q ss_pred cc-CcEEEEEcccc
Q 035887 251 SK-KKFLLLLDDIW 263 (886)
Q Consensus 251 ~~-k~~LlVlDdv~ 263 (886)
.. +.=++++|-..
T Consensus 317 ~~~~~DvVLIDTaG 330 (436)
T PRK11889 317 EEARVDYILIDTAG 330 (436)
T ss_pred hccCCCEEEEeCcc
Confidence 22 23467778664
No 281
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.94 E-value=0.023 Score=55.55 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|.|+.|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998875
No 282
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.93 E-value=0.045 Score=60.85 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC-----CCCHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE-----NRSLEEKASGIF 247 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~ 247 (886)
...+|.++|.+|+||||+|..++... ... . ..+..|++... ....+.++.++++++.+. ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~~-g-~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KKK-G-LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HHc-C-CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999999877 322 2 24555554321 123455666777766543 123333333333
Q ss_pred HHhccCcEEEEEcccc
Q 035887 248 KILSKKKFLLLLDDIW 263 (886)
Q Consensus 248 ~~l~~k~~LlVlDdv~ 263 (886)
+.+.+. -++|+|...
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 567777763
No 283
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.92 E-value=0.042 Score=58.76 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhcc---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLD---APNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
...++.|+|.+|+|||||+..++..... ....-..++|++....+...++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4679999999999999999998764310 1112246799998888887764 445555543
No 284
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.026 Score=63.78 Aligned_cols=73 Identities=26% Similarity=0.271 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM--QLESVQEKIGERIGFLENRSLEEKASGIFKILS 251 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 251 (886)
..+-|.|.|+.|+|||+||+.+++.. . +.+...+.+|+++.-. ..+.+++.+- ..+.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~---------------~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSSLEKIQKFLN---------------NVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchhHHHHHHHHH---------------HHHHHHHh
Confidence 34678899999999999999999998 3 5666677888876532 2333333322 22334456
Q ss_pred cCcEEEEEcccc
Q 035887 252 KKKFLLLLDDIW 263 (886)
Q Consensus 252 ~k~~LlVlDdv~ 263 (886)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 789999999996
No 285
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.90 E-value=0.15 Score=60.49 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=89.8
Q ss_pred ccccchhhHHHHHHHH---hc---------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHH
Q 035887 155 TIVGLDSTFDKVWRCL---IQ---------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLES 222 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (886)
++.|.+..++++.+.+ .+ .-.+-|.++|++|.||||+|+.+.+.. ...| +.++.++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 4567666655554433 22 112348899999999999999998876 2233 2222221
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCCcEE
Q 035887 223 VQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNASKI 285 (886)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~gs~i 285 (886)
+.. ... ......+...+...-...+.+|++|+++... ....+...+.. ....+.-|
T Consensus 221 ~~~----~~~---g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 221 FVE----MFV---GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred hHH----hhh---cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 110 110 1112222333333334578999999986421 11111111110 12234445
Q ss_pred EEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc
Q 035887 286 VFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL 347 (886)
Q Consensus 286 iiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 347 (886)
|.||...+.... . .-+..+.+...+.++-.++++.+..........+ ...+++.+.|.
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 557776654221 1 2246788888888888888888775432222222 23466666664
No 286
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.87 E-value=0.0035 Score=37.26 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=9.3
Q ss_pred CCEEeccCCCccccchhhh
Q 035887 582 LQYLNLSETSIKELPHELK 600 (886)
Q Consensus 582 L~~L~L~~~~i~~LP~~i~ 600 (886)
|++|+|++|+++++|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555555554443
No 287
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.024 Score=52.26 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=35.0
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFL 234 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 234 (886)
+|.|-|++|+||||+|+.+.++. .-.| .+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999987 1111 13457899999998765
No 288
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.13 Score=55.16 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+.++|+.|+||||+|+.+....
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999988875
No 289
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.01 Score=54.63 Aligned_cols=24 Identities=46% Similarity=0.551 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
--|+|.||+|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458999999999999999999987
No 290
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.16 Score=55.66 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.9
Q ss_pred ccccchh---hHHHHHHHHhcC--------C-ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDS---TFDKVWRCLIQE--------Q-VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++-|-|+ |+++|+++|.+. + .+-|.++|++|.|||-||++|+...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567765 667788888762 2 4568899999999999999999887
No 291
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.75 E-value=0.05 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=95.75 E-value=0.063 Score=57.58 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCC-----CCCHHHHH-HH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ--LESVQEKIGERIGFLE-----NRSLEEKA-SG 245 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~-----~~~~~~~~-~~ 245 (886)
+..+|.++|+.|+||||++..++... .. ..+ .++.+.. +.+. ...-++..++.++.+. ..+..... +.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~~-~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-KK-NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HH-cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46899999999999999999888776 22 223 3444443 3332 3334556677776543 22333322 22
Q ss_pred HHHHhccCcEEEEEcccc
Q 035887 246 IFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 246 l~~~l~~k~~LlVlDdv~ 263 (886)
+...-....=++++|-..
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222223388888875
No 293
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.69 E-value=0.039 Score=57.70 Aligned_cols=131 Identities=15% Similarity=0.233 Sum_probs=73.2
Q ss_pred cchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEE----EeCCCCC---------HHHHH
Q 035887 158 GLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWV----VVSKDMQ---------LESVQ 224 (886)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv----~~s~~~~---------~~~~~ 224 (886)
+|..+..--+++|.++++..|.+.|.+|.|||.||-+..=...-.++.|..++-. .+.++.+ +.-.+
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 4667777778899999999999999999999999987544331234455544332 2333211 11122
Q ss_pred HHHHHH---hCCCCCCCHHHHHHHHH----------HHhccC---cEEEEEccccch--hhhhhccCCCCCCCCCCcEEE
Q 035887 225 EKIGER---IGFLENRSLEEKASGIF----------KILSKK---KFLLLLDDIWER--VDLAKLGVPFPAISKNASKIV 286 (886)
Q Consensus 225 ~~i~~~---l~~~~~~~~~~~~~~l~----------~~l~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~ii 286 (886)
+.|..- +....... ....+.+- .+++|+ +-++++|...+. .+...+ +. ..+.||||+
T Consensus 308 q~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---lt-R~G~GsKIV 382 (436)
T COG1875 308 QAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LT-RAGEGSKIV 382 (436)
T ss_pred HHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HH-hccCCCEEE
Confidence 222222 21111111 22222221 122343 458999998753 344433 33 567899999
Q ss_pred EEcCChh
Q 035887 287 FTTRLEN 293 (886)
Q Consensus 287 iTtR~~~ 293 (886)
.|---..
T Consensus 383 l~gd~aQ 389 (436)
T COG1875 383 LTGDPAQ 389 (436)
T ss_pred EcCCHHH
Confidence 9865443
No 294
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.67 E-value=0.21 Score=52.06 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred HHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCC
Q 035887 168 RCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE---------NRS 238 (886)
Q Consensus 168 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~ 238 (886)
.++...+..+|.|.|.+|.|||||+..+.+.. .... .++.+.. +..+..+ .+.++..+.+. -.+
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l---~~~~-~~~VI~g-D~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL---KDSV-PCAVIEG-DQQTVND--AARIRATGTPAIQVNTGKGCHLD 169 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh---ccCC-CEEEECC-CcCcHHH--HHHHHhcCCcEEEecCCCCCcCc
Confidence 33444678999999999999999999999986 2222 3333321 1112221 22334443322 122
Q ss_pred HHHHHHHHHHHhccCcEEEEEccccc
Q 035887 239 LEEKASGIFKILSKKKFLLLLDDIWE 264 (886)
Q Consensus 239 ~~~~~~~l~~~l~~k~~LlVlDdv~~ 264 (886)
...+...+...-....-++|++++.+
T Consensus 170 a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 170 AQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 33344444444344456778898864
No 295
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.64 E-value=0.081 Score=49.85 Aligned_cols=113 Identities=20% Similarity=0.102 Sum_probs=61.9
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC---CCCHHHHHHHHHHHh-----CCCC---CCCHHH---
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK---DMQLESVQEKIGERI-----GFLE---NRSLEE--- 241 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~~---~~~~~~--- 241 (886)
..|-|++..|.||||.|....-+. ..+-..+.++..-. ..+...+++.+ ..+ +... ..+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 467888999999999999988776 34444566654332 33444444433 001 0000 111111
Q ss_pred ----HHHHHHHHhccCc-EEEEEccccch-----hhhhhccCCCCCCCCCCcEEEEEcCChh
Q 035887 242 ----KASGIFKILSKKK-FLLLLDDIWER-----VDLAKLGVPFPAISKNASKIVFTTRLEN 293 (886)
Q Consensus 242 ----~~~~l~~~l~~k~-~LlVlDdv~~~-----~~~~~l~~~~~~~~~~gs~iiiTtR~~~ 293 (886)
..+..++.+.... =|+|||++-.. .+.+++...+. ....+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 1223344444444 49999998543 12233333333 3445678999999843
No 296
>PRK06547 hypothetical protein; Provisional
Probab=95.64 E-value=0.016 Score=55.95 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 166 VWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+...+......+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555678899999999999999999998875
No 297
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.63 E-value=0.088 Score=56.66 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhcc---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLD---APNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
...++-|+|.+|+|||+++..++-.... ....-..++|++....|...++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 4578889999999999999987755310 01122379999999999888764 56666654
No 298
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.62 E-value=0.043 Score=54.84 Aligned_cols=93 Identities=24% Similarity=0.359 Sum_probs=56.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC--------
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE-------- 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------- 235 (886)
.++.+.. .+-.-++|.|.+|+|||+|+..+.+.. .-+.++++-+.+. ....++.+++...-....
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3444433 345788999999999999999999986 2344477777655 345556655533211111
Q ss_pred CCCHHH------HHHHHHHHh--ccCcEEEEEcccc
Q 035887 236 NRSLEE------KASGIFKIL--SKKKFLLLLDDIW 263 (886)
Q Consensus 236 ~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~ 263 (886)
...... ..-.+.+++ +++.+|+++||+-
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 111111 111233333 5899999999984
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.60 E-value=0.051 Score=60.24 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCC-----CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ--LESVQEKIGERIGFLE-----NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~-----~~~~~~~~~~l 246 (886)
...++.++|++|+||||.|..++... .. ..-..++-|++.. +. ..+-++..++..+.+. ..+..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~-~~g~kV~lV~~D~-~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KK-KQGKKVLLVACDL-YRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HH-hCCCeEEEEeccc-cchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 46799999999999999999988775 21 1122445554432 22 2333444555555443 23444444444
Q ss_pred HHHhccCcE-EEEEcccc
Q 035887 247 FKILSKKKF-LLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~k~~-LlVlDdv~ 263 (886)
.+.+..+.+ ++|+|-..
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444444 66777654
No 300
>PRK10867 signal recognition particle protein; Provisional
Probab=95.59 E-value=0.046 Score=60.63 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|.++|++|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999988888766
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.049 Score=59.05 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
+-.++.++|+.|+||||++.++.... ........+..++... .....+-++...+.++.+. ..+..++...+. .+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-EL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hh
Confidence 34799999999999999999999876 1111224566665332 2234555666666776654 223333333333 34
Q ss_pred ccCcEEEEEcccc
Q 035887 251 SKKKFLLLLDDIW 263 (886)
Q Consensus 251 ~~k~~LlVlDdv~ 263 (886)
.++ =++++|...
T Consensus 214 ~~~-DlVLIDTaG 225 (374)
T PRK14722 214 RNK-HMVLIDTIG 225 (374)
T ss_pred cCC-CEEEEcCCC
Confidence 444 455689875
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.58 E-value=0.053 Score=54.99 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCC--------CCCHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-----DMQLESVQEKIGERIGFLE--------NRSLE 240 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~--------~~~~~ 240 (886)
+-.+++|+|..|.||||+++.+..=. ..-...+++...+ .....+-..++++.++... .-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 55789999999999999999998765 2222333333221 2223344556666666443 11222
Q ss_pred HHH-HHHHHHhccCcEEEEEccccchh------hhhhccCCCCCCCCCCcEEEEEcCChhhhhccCc
Q 035887 241 EKA-SGIFKILSKKKFLLLLDDIWERV------DLAKLGVPFPAISKNASKIVFTTRLENVCGLMET 300 (886)
Q Consensus 241 ~~~-~~l~~~l~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~~ 300 (886)
+.+ -.+.+.|.-++-++|.|..-+.. +.-.+...+ ....|-..+..|-+-.++..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl--q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL--QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH--HHHhCCeEEEEEEEHHhhhhhcc
Confidence 222 24677788899999999864321 111111111 12345567778888777766544
No 303
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.061 Score=58.82 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCC-CCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAP-NNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE--NRSLEEKASGIFKI 249 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~ 249 (886)
..++|.++|+.|+||||.+..+........ ..-..+..+++... .....-++..++.++.+. ..+.+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457999999999999999999988762111 12345666665432 122333666666666653 34455555545443
Q ss_pred hccCcEEEEEcccc
Q 035887 250 LSKKKFLLLLDDIW 263 (886)
Q Consensus 250 l~~k~~LlVlDdv~ 263 (886)
.+.-++++|...
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 345688889874
No 304
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.56 E-value=0.059 Score=57.93 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAP----NNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.-+++-|+|.+|+||||++.+++... ... ..-..++||+....|+...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45788999999999999999998765 211 011379999999888877654 44555543
No 305
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.54 E-value=0.059 Score=56.30 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCC-----CCCHHHH-HHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE--SVQEKIGERIGFLE-----NRSLEEK-ASG 245 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~-----~~~~~~~-~~~ 245 (886)
+.++|.++|++|+||||++..++... . ..-..+.++++. .+... .-+...++..+.+. ..+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999998877 2 233456666653 23322 33344555555332 1223222 233
Q ss_pred HHHHhccCcEEEEEcccc
Q 035887 246 IFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 246 l~~~l~~k~~LlVlDdv~ 263 (886)
+.....+..=++++|-..
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444334445577888764
No 306
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.062 Score=63.90 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=68.4
Q ss_pred CccccchhhHHHHHHHHhc------C--CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------E--QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQE 225 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 225 (886)
..++|-++.+..|.+.+.. + ....+.+.|+.|+|||-||+++..-. -+..+..+-++.|. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh
Confidence 3467888888888887764 1 35678899999999999999998876 34455555554443 222
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhccCcEE-EEEccccc
Q 035887 226 KIGERIGFLENRSLEEKASGIFKILSKKKFL-LLLDDIWE 264 (886)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~L-lVlDdv~~ 264 (886)
+.+.++.+...-..+....|.+.++.++|- |+||||+.
T Consensus 633 -vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred -hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 444445544333344455778888888885 45799974
No 307
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.51 E-value=0.021 Score=54.86 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=61.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD--MQLESVQEKIGERIGFLENRS-LEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l 250 (886)
.-.+++|+|+.|.|||||.+.+.... ......+++.-... .+..+..+ +.++.....+ .+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDARR---AGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHHh---cCeEEEEecCHHHHHHHHHHHHH
Confidence 45689999999999999999998765 23344455432111 11111111 1111100112 222233455666
Q ss_pred ccCcEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCChhhh
Q 035887 251 SKKKFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRLENVC 295 (886)
Q Consensus 251 ~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~ 295 (886)
-.++-++++|+.-. ......+...+......|..||++|.+.+..
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 67788889998753 2222333222221223366788888886643
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.50 E-value=0.091 Score=57.39 Aligned_cols=81 Identities=26% Similarity=0.371 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-.++.|.|.+|+|||||+.+++... ......++|++..+. ..++ ..-++.++... ..+.+++.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 45799999999999999999998876 223357888876543 2332 22234454322 22333333333
Q ss_pred HHHhccCcEEEEEcccc
Q 035887 247 FKILSKKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~k~~LlVlDdv~ 263 (886)
. +.+.-++|+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2356678888763
No 309
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.49 E-value=0.057 Score=55.18 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+...+|+|.|+.|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999877
No 310
>PTZ00035 Rad51 protein; Provisional
Probab=95.48 E-value=0.14 Score=55.25 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccC----CCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDA----PNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.-.++.|+|..|+|||||+..++-.. .. ...-..++|++....|+..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45789999999999999999887654 21 112346789998888877764 445665543
No 311
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.48 E-value=0.047 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998865
No 312
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.06 Score=55.76 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH-hC---CCCCCCHHH---HHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER-IG---FLENRSLEE---KASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~---~~~~~~~~~---~~~~l 246 (886)
.-+++=|+|+.|.||||+|.+++-.. ...-..++|++.-+.++...+.. ++.. +. .....+.++ .++.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45788899999999999999988776 34455899999999998877643 3333 22 111333333 33344
Q ss_pred HHHhccCcEEEEEcccc
Q 035887 247 FKILSKKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~k~~LlVlDdv~ 263 (886)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44444445688899874
No 313
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.47 E-value=0.056 Score=52.41 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=56.0
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE------eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV------VSKDMQLESVQEKIGERIGFLENRSLEEKASGI 246 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l 246 (886)
..-.+++|+|+.|.|||||++.+..-. . .....+++. +.+... + + .-+...-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~---p~~G~i~~~g~~i~~~~q~~~-----------L----S-gGq~qrv~l 82 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL-I---PNGDNDEWDGITPVYKPQYID-----------L----S-GGELQRVAI 82 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC-C---CCCcEEEECCEEEEEEcccCC-----------C----C-HHHHHHHHH
Confidence 345799999999999999999998765 1 122222221 122211 1 0 112222345
Q ss_pred HHHhccCcEEEEEccccc---hhhhhhccCCCCCCC-CCCcEEEEEcCChhhhh
Q 035887 247 FKILSKKKFLLLLDDIWE---RVDLAKLGVPFPAIS-KNASKIVFTTRLENVCG 296 (886)
Q Consensus 247 ~~~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~-~~gs~iiiTtR~~~v~~ 296 (886)
...+..++=++++|+--. ......+...+.... ..+..||++|.+.....
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 566667788899998743 222222222221011 12356777777765543
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.47 E-value=0.11 Score=53.25 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (886)
.-+++.|.|.+|.|||++|.++.... ...-..++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHH
Confidence 56899999999999999999976654 13456788988754 44455444
No 315
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.46 E-value=0.1 Score=54.18 Aligned_cols=124 Identities=18% Similarity=0.138 Sum_probs=67.6
Q ss_pred HHHHHHHHh-cCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC-CC-----
Q 035887 163 FDKVWRCLI-QEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF-LE----- 235 (886)
Q Consensus 163 ~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~----- 235 (886)
.+.++..+. .++..-++|+|+.|.|||||.+.+.... ......+++.-.+- ...+-..+++..... ++
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEEe-ecchhHHHHHHHhcccccccccc
Confidence 344444444 3456789999999999999999999876 22233334321110 000111233322211 11
Q ss_pred CCC---HHHHHHHHHHHhc-cCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhh
Q 035887 236 NRS---LEEKASGIFKILS-KKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVC 295 (886)
Q Consensus 236 ~~~---~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~ 295 (886)
..+ .......+...+. ..+=++++|.+...+.+..+...+ ..|..||+||-+..+.
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHHH
Confidence 000 0111222333333 578899999998766665554333 2477899999876653
No 316
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.46 E-value=0.11 Score=52.38 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=114.9
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhcc---CCCCCCeEEEEEeCCC--------------
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLD---APNNFEVVIWVVVSKD-------------- 217 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~-------------- 217 (886)
.+.++++....+.....+++.+-..++|+.|.||-|.+..+.+...- .+-.-+..-|.+-|..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35677777777777776677899999999999999988877766521 0112234444433222
Q ss_pred -------CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcE-EEEEccccc--hhhhhhccCCCCCCCCCCcEEEE
Q 035887 218 -------MQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKF-LLLLDDIWE--RVDLAKLGVPFPAISKNASKIVF 287 (886)
Q Consensus 218 -------~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iii 287 (886)
+.-+.+.++|+++..-... + +.-..+.| ++|+-.+++ .+....++.... .-...+|+|+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q---------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~RlIl 162 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ---------I-ETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNCRLIL 162 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc---------h-hhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCceEEE
Confidence 1122333344433321110 0 00012344 455555543 122222221111 1234566666
Q ss_pred EcCCh--hhhhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch-hHHHHHHHHhcCC---
Q 035887 288 TTRLE--NVCGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP-LALITTGRAMSGK--- 361 (886)
Q Consensus 288 TtR~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l~~~--- 361 (886)
..-+- -+...-+..-.+++...+++|....+++.+..+....+ .+++++|+++++|.- .|+-++-..-..+
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 44432 12222223346899999999999999998866553333 678999999999864 3433322211111
Q ss_pred ------CCHHHHHHHHHHHhhc
Q 035887 362 ------KTPEEWNYAIEMLRRS 377 (886)
Q Consensus 362 ------~~~~~w~~~~~~l~~~ 377 (886)
-...+|+-++..+...
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccCCCCCCccHHHHHHHHHHH
Confidence 1356899887766554
No 317
>PRK07667 uridine kinase; Provisional
Probab=95.41 E-value=0.03 Score=55.44 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=29.9
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 163 FDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+.|.+.+.. ++..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666654 345799999999999999999999876
No 318
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.067 Score=52.58 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHHHHHhccCcEEEEEccccchhhhhh---ccCCCCCCCCCCcEEEEEcCChhhhhccCccceEEc
Q 035887 243 ASGIFKILSKKKFLLLLDDIWERVDLAK---LGVPFPAISKNASKIVFTTRLENVCGLMETQKKFKV 306 (886)
Q Consensus 243 ~~~l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 306 (886)
...+.+.+--++=+.|||..++--+.+. +...+......|+-++|.|..+.++....++.++-+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 3445555556788999999875433332 222222123457778888888888887766655543
No 319
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.40 E-value=0.012 Score=53.90 Aligned_cols=21 Identities=38% Similarity=0.803 Sum_probs=19.8
Q ss_pred EEEEcCCCchhHHHHHHHHHh
Q 035887 178 IGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~ 198 (886)
|+|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999887
No 320
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.68 Score=50.40 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=80.6
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc--cC
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILS--KK 253 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~--~k 253 (886)
+--.++||+|.||||++.++++.. .|+.. =+..+...+-.+ |++.|. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n~d-----------------------Lr~LL~~t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLDSD-----------------------LRHLLLATPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCcHH-----------------------HHHHHHhCCC
Confidence 446789999999999999999987 35422 222222111111 233332 35
Q ss_pred cEEEEEccccchhh-----------hh---------hccCCCC-CCCCC-CcEEEE-EcCChhh-----hhccCccceEE
Q 035887 254 KFLLLLDDIWERVD-----------LA---------KLGVPFP-AISKN-ASKIVF-TTRLENV-----CGLMETQKKFK 305 (886)
Q Consensus 254 ~~LlVlDdv~~~~~-----------~~---------~l~~~~~-~~~~~-gs~iii-TtR~~~v-----~~~~~~~~~~~ 305 (886)
+-+||+.|++-..+ .. .+...+. .+... +-|||| ||-..+- .+.-.-+..+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 66777777763211 00 1111111 01112 235555 6665443 22212345788
Q ss_pred ccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH-HHHhcCC
Q 035887 306 VECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT-GRAMSGK 361 (886)
Q Consensus 306 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~-~~~l~~~ 361 (886)
+..=+.+....||....+.+. ++ .+..+|.+...|.-+.=..+ +.+|..+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 999999999999999886543 22 23455555555554443334 4445543
No 321
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.37 E-value=0.012 Score=58.36 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=44.3
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCC---eEEEEEeCCCCCHHHHHHHHHHHh------CCCCCCCHHHHHHHHH
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFE---VVIWVVVSKDMQLESVQEKIGERI------GFLENRSLEEKASGIF 247 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l------~~~~~~~~~~~~~~l~ 247 (886)
||+|.|++|+||||+|+.+.... .. .... ....+....-........ .-... ..+...+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~~-~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-NK-RGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TT-CTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-Cc-cCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHH
Confidence 79999999999999999999987 21 2222 233333322222222221 11111 1111456677777777
Q ss_pred HHhccCcEEE
Q 035887 248 KILSKKKFLL 257 (886)
Q Consensus 248 ~~l~~k~~Ll 257 (886)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666444
No 322
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.36 E-value=0.043 Score=60.60 Aligned_cols=87 Identities=23% Similarity=0.191 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHH------
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLE------ 240 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~------ 240 (886)
.-..++|+|..|+|||||++.+.... .....+++.......++..+....+....... +....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 45689999999999999999887654 22334555544344455555444443331111 11111
Q ss_pred HHHHHHHHHh--ccCcEEEEEccccc
Q 035887 241 EKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
...-.+.+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1122344444 47899999999853
No 323
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.35 E-value=0.01 Score=71.14 Aligned_cols=183 Identities=20% Similarity=0.282 Sum_probs=88.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhcc-CCC------------CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLD-APN------------NFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLE 240 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~------------~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (886)
+..++.|.|+.|.||||+.+.+...... ..+ .|+.+ +...... ..+.+.+. +..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~-------~si~~~LS-----tfS 387 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDE-------QSIEQNLS-----TFS 387 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChH-------hHHhhhhh-----HHH
Confidence 4479999999999999999998766200 011 11111 1111111 11111110 111
Q ss_pred HHHHHHHHHhc--cCcEEEEEccccc---hhhhhhccC-CCCCCCCCCcEEEEEcCChhhhhccCccceEEccCCChH-H
Q 035887 241 EKASGIFKILS--KKKFLLLLDDIWE---RVDLAKLGV-PFPAISKNASKIVFTTRLENVCGLMETQKKFKVECLGDN-E 313 (886)
Q Consensus 241 ~~~~~l~~~l~--~k~~LlVlDdv~~---~~~~~~l~~-~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~-e 313 (886)
.-...+...+. ..+-|+++|.... ..+-..+.. .+......|+.+|+||...++.........+.-..+..+ +
T Consensus 388 ~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~ 467 (771)
T TIGR01069 388 GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEE 467 (771)
T ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC
Confidence 11112222333 4789999999864 222222211 111012357899999999887543222211111111111 1
Q ss_pred HHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 035887 314 AWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRS 377 (886)
Q Consensus 314 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~ 377 (886)
... |..+.-... +. ...|-.|++++ |+|-.+.--|..+.. ....+...+++.|...
T Consensus 468 ~l~-p~Ykl~~G~----~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 468 TLS-PTYKLLKGI----PG-ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred CCc-eEEEECCCC----CC-CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 000 011110111 11 23578888887 788888777776655 2344566666665543
No 324
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.18 Score=58.15 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=85.1
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.+.|.+..++.+.+.+.- ...+.+-++|++|.|||.||+++++.. ...|-.+.+-.
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~-------- 311 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSE-------- 311 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHH--------
Confidence 345666665555544321 245688999999999999999999965 34443322211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-------------hhhhccCCCCC-CCCCCcEEEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------DLAKLGVPFPA-ISKNASKIVF 287 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~-~~~~gs~iii 287 (886)
+. ...- ..+...+........+..+..|++|+++... ...++...+.. ....+-.||-
T Consensus 312 -l~----sk~v---Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 312 -LL----SKWV---GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred -Hh----cccc---chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 11 1000 1223333333444445789999999996421 12222222220 1122323444
Q ss_pred EcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCC
Q 035887 288 TTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEE 325 (886)
Q Consensus 288 TtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~ 325 (886)
||-....... . .-...+.+.+-+.++..+.|+.+....
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 5544433221 1 224578999999999999999998643
No 325
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.1 Score=58.58 Aligned_cols=87 Identities=24% Similarity=0.296 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
...+|+|+|++|+||||++.++.... ........+..++... .......+....+.++... ..+..++...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 45799999999999999999988775 2222234455665422 1112223333334444322 2333444444433 3
Q ss_pred ccCcEEEEEcccc
Q 035887 251 SKKKFLLLLDDIW 263 (886)
Q Consensus 251 ~~k~~LlVlDdv~ 263 (886)
. ..=+|++|...
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 34578888874
No 326
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.092 Score=56.41 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
+.+++.|+|+.|+||||++..+.... .. .-..+.++++.... ....-++..++.++.+. ..+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 46799999999999999999998776 22 22456777664322 23445666666666543 345666655554332
Q ss_pred c-cCcEEEEEcccc
Q 035887 251 S-KKKFLLLLDDIW 263 (886)
Q Consensus 251 ~-~k~~LlVlDdv~ 263 (886)
. +..=++++|-..
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 344577778764
No 327
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.31 E-value=0.072 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=21.4
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 328
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.08 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999998875
No 329
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.19 Score=55.44 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFL 234 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 234 (886)
...+|+++|+.|+||||++..+.... ......+.+..+..... ....+-+....+.++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 34799999999999999999887764 11122234444443221 12223344455555544
No 330
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.24 E-value=0.084 Score=54.92 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
.-+++.|.|++|.||||+|.++.... ...-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecC
Confidence 45799999999999999999987665 12345788888764
No 331
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.24 E-value=0.073 Score=51.27 Aligned_cols=125 Identities=11% Similarity=0.098 Sum_probs=62.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCC--C---CeEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNN--F---EVVIWVVVSKDMQ--LESVQEKIGERIGFLENRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F---~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~l 246 (886)
.-.+++|+|+.|.|||||++.+........+. + ..+.+ +.+... ...+...+.-. ....-..-+...-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~-~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP-WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc-CCCCCCHHHHHHHHH
Confidence 45689999999999999999998875111111 1 11222 233221 11233332210 111111222233345
Q ss_pred HHHhccCcEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCChhhhhccCccceEEc
Q 035887 247 FKILSKKKFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRLENVCGLMETQKKFKV 306 (886)
Q Consensus 247 ~~~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 306 (886)
.+.+-.++=++++|+--. ......+...+. .. +..||++|.+.+... ..++.+.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 556666777888888643 222222322222 11 356888888766543 23344444
No 332
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.038 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.659 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++-+|||.|.+|+||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999988
No 333
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.23 E-value=0.056 Score=63.84 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++-|+|++|+||||||.+++... ...-..++|+.....++. ..+++++... ..+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46788999999999999998876655 233467899998877774 3667776543 44555566666
Q ss_pred HHHhcc-CcEEEEEcccc
Q 035887 247 FKILSK-KKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~-k~~LlVlDdv~ 263 (886)
...++. +.-|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 666654 56689999985
No 334
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.056 Score=52.49 Aligned_cols=111 Identities=21% Similarity=0.188 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe-----------------CCCCC---HHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV-----------------SKDMQ---LESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-----------------s~~~~---~~~~~~~i~~~l~~ 233 (886)
.-.+++|+|+.|.|||||++.+.... . .....+++.- .+... -..+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----- 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL-K---PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----- 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-C---CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----
Confidence 45689999999999999999998865 1 2233333321 11100 001111111
Q ss_pred CCCCCH-HHHHHHHHHHhccCcEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCChhhhh
Q 035887 234 LENRSL-EEKASGIFKILSKKKFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRLENVCG 296 (886)
Q Consensus 234 ~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~ 296 (886)
.+. +...-.+...+..++=++++|+.-. ......+...+......|..||++|.+.....
T Consensus 96 ---LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 96 ---LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred ---cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 111 2222346666777888999998753 22222222222211123677888888876544
No 335
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.21 E-value=0.026 Score=62.58 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35799999999998888653 456799999999999999999876
No 336
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.19 E-value=0.067 Score=56.04 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=43.4
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHH--HHHhCCCCCCCHHHHHHHHHHHh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKI--GERIGFLENRSLEEKASGIFKIL 250 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~l~~~l 250 (886)
...-+|+|.|..|+||||+|+.+..-. .....-..+..++...-.......... ....+.+...+.+.+...+...-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll-~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL-SRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-hhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 356799999999999999998876654 111111234444443332222222221 11112233556666666666655
Q ss_pred ccC
Q 035887 251 SKK 253 (886)
Q Consensus 251 ~~k 253 (886)
.++
T Consensus 139 ~g~ 141 (290)
T TIGR00554 139 SGK 141 (290)
T ss_pred CCC
Confidence 554
No 337
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.18 E-value=0.11 Score=52.06 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998864
No 338
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.12 Score=52.02 Aligned_cols=26 Identities=38% Similarity=0.485 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.17 E-value=0.016 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 340
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.16 E-value=0.076 Score=58.56 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|.++|+.|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988766
No 341
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.15 Score=54.46 Aligned_cols=90 Identities=24% Similarity=0.338 Sum_probs=57.5
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------
Q 035887 164 DKVWRCLIQE--QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE------ 235 (886)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------ 235 (886)
.++-+.|-.+ .-++|.|-|-+|||||||.-++..+. . ..- .++||+..+...-.+ --++.++...
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l-A--~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL-A--KRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHH-H--hcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEEe
Confidence 3444445443 45799999999999999999999998 2 222 788887655432222 2345555432
Q ss_pred -CCCHHHHHHHHHHHhccCcEEEEEcccc
Q 035887 236 -NRSLEEKASGIFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 236 -~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 263 (886)
..+.+.....+.+ .++-++|+|-+.
T Consensus 153 aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 3344444433333 678899999874
No 342
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.15 E-value=0.1 Score=53.73 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhcc--CCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHH-
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLD--APNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLE- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~- 240 (886)
.+-..++|.|..|+|||+|+..+.++. . .+.+-+.++++-+.+.. ...++.+++.+.=.... +...-
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 355788999999999999999988775 2 12335678888887764 45566666554321111 11111
Q ss_pred -----HHHHHHHHHhc---cCcEEEEEccccc
Q 035887 241 -----EKASGIFKILS---KKKFLLLLDDIWE 264 (886)
Q Consensus 241 -----~~~~~l~~~l~---~k~~LlVlDdv~~ 264 (886)
-..-.+.++++ ++.+|+++||+-.
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11224556653 6899999999854
No 343
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.0015 Score=65.03 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=77.2
Q ss_pred CCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeecccccccccccc-ccccCCCCCCEE
Q 035887 555 MPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPR-QLLCSFSGLEVL 633 (886)
Q Consensus 555 l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L 633 (886)
+.+.+.|++.+| .++.+. .+.+++.|+.|.|+-|+|+.| ..+..+++|+.|+|+.|. +..+.+ ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 557788999999 787764 345799999999999999999 468899999999999885 454433 125788999999
Q ss_pred EeccCCCcccccccccccCCccchHHHhcCCcCCceEEE
Q 035887 634 RMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSV 672 (886)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 672 (886)
-+..|+..+.-+.. .-...+..|.+|++|....+
T Consensus 94 WL~ENPCc~~ag~n-----YR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQN-----YRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchh-----HHHHHHHHcccchhccCccc
Confidence 99988876532221 11124445555555543333
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.12 E-value=0.086 Score=49.37 Aligned_cols=100 Identities=22% Similarity=0.213 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeC----CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVS----KDMQLESVQEKIGERIGFLENRSLEEKASGIFKI 249 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s----~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~ 249 (886)
.-.+++|+|..|.|||||++.+..-. . .....+|+.-. -.+. + + ..+...-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~~~i~~~~~-----------l----S-~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGSTVKIGYFEQ-----------L----S-GGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCeEEEEEEcc-----------C----C-HHHHHHHHHHHH
Confidence 45789999999999999999998865 1 22333333210 0000 1 1 112222235556
Q ss_pred hccCcEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCChhhhh
Q 035887 250 LSKKKFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRLENVCG 296 (886)
Q Consensus 250 l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~ 296 (886)
+..++=++++|+.-. ......+...+. .. +..||++|.+.+...
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHHH
Confidence 666778899998753 333333322232 11 246888887766543
No 345
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.10 E-value=0.1 Score=52.26 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+...|.++||+|.||||..|.++...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688899999999999999999887
No 346
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.09 E-value=0.056 Score=58.74 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcC--------------CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQE--------------QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899988888887665531 23678899999999999999999886
No 347
>PTZ00301 uridine kinase; Provisional
Probab=95.05 E-value=0.027 Score=56.25 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988775
No 348
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.04 E-value=0.052 Score=59.65 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHHH---
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLEE--- 241 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~--- 241 (886)
.-..++|+|..|+|||||++.+.... ..+.++.+-+.+.. ...++.++++..-+... +.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 55789999999999999999998654 22455556665543 34556666544422211 111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccccc
Q 035887 242 ---KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 242 ---~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
.+-.+.+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 122344555 57999999999953
No 349
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.00 E-value=1.7 Score=47.36 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD--MQLESVQEKIGERIGFLE 235 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~ 235 (886)
...||-.+|.-|.||||.|-++++.. + .+-..+.-|++ +. +...+-++.++++++.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-k--k~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-K--KKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-H--HcCCceEEEec-ccCChHHHHHHHHHHHHcCCce
Confidence 46799999999999999999999988 2 22223333333 33 344556777888877554
No 350
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.9 Score=52.01 Aligned_cols=172 Identities=17% Similarity=0.078 Sum_probs=94.0
Q ss_pred cccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHH
Q 035887 156 IVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLES 222 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (886)
+-|..+.++-+.+.+.- ....-|.++|++|.|||-||.++.... . .-+++|..+ +
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-N-------LRFISVKGP----E 736 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-C-------eeEEEecCH----H
Confidence 44555666666665542 123458899999999999999998775 1 235566443 2
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch-------------hhhhhccCCCC-CCCCCCcEEEEE
Q 035887 223 VQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER-------------VDLAKLGVPFP-AISKNASKIVFT 288 (886)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~-~~~~~gs~iiiT 288 (886)
++.+.+ ..+++...+...+.-.-+++++++|..++. ....++...+. ..+-.|--|+-.
T Consensus 737 lL~KyI-------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 737 LLSKYI-------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred HHHHHh-------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEe
Confidence 322222 233444444444445569999999998742 11223322221 022345555554
Q ss_pred cCChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 289 TRLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 289 tR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
|...+. .+.-.-++.+.-+.-++.|-.++|+..+..-....+-+ .+.++.+.+|..-|
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 444443 22212234455555667777788877664322122223 45667777776544
No 351
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.97 E-value=0.02 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998776
No 352
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.96 E-value=0.021 Score=57.51 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+..+|+|.|.+|+||||||+.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 353
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.95 E-value=0.081 Score=58.43 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHH---
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLE--- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~--- 240 (886)
..-..++|+|..|+|||||++.+++.. ..+.++++-+.+.. ...++..+.+..-+... +....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 356789999999999999999998765 12445556565543 34455544444322211 11111
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEccccc
Q 035887 241 ---EKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
..+-.+.+++ +++.+|+++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122345555 47999999999953
No 354
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.85 Score=45.47 Aligned_cols=173 Identities=16% Similarity=0.206 Sum_probs=92.4
Q ss_pred cccCCCC--CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEE
Q 035887 147 VDERPLE--PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIW 211 (886)
Q Consensus 147 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 211 (886)
.++.|++ +.+=|-+..++++++.+.- ...+-+..+|++|.|||-+|++..... ...|-..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLKLA- 237 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFLKLA- 237 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHHhc-
Confidence 4455553 3567889999999988742 135668899999999999999988765 33441100
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-cCcEEEEEccccc-------------hhh---hhhccCC
Q 035887 212 VVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILS-KKKFLLLLDDIWE-------------RVD---LAKLGVP 274 (886)
Q Consensus 212 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~-------------~~~---~~~l~~~ 274 (886)
--++.+.+ ..+...+.......-+ ..+.+|++|.++- .+. .-++...
T Consensus 238 ------------gPQLVQMf----IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 238 ------------GPQLVQMF----IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred ------------chHHHhhh----hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 00111111 1122222222222223 4688999998752 111 1111122
Q ss_pred CCC-CCCCCcEEEEEcCChhhh-----hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHH
Q 035887 275 FPA-ISKNASKIVFTTRLENVC-----GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKT 339 (886)
Q Consensus 275 ~~~-~~~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 339 (886)
+.. .....-|||-.|..-++. +.-.-++.|+..--+++.-.++++-+..+.....+-.++++++.
T Consensus 302 LDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 302 LDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred hcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 210 123456788877765553 22223456666555544444555555555444455566666553
No 355
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.94 E-value=0.23 Score=53.63 Aligned_cols=86 Identities=23% Similarity=0.233 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
+-+||.+||+.|+||||-..+++.++ .....=..+..++...- -+..+-++..++-++.+- ..+..++...+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 47999999999999998766666666 21233345677765332 244455666666677665 4556666555443 2
Q ss_pred ccCcEEEEEccc
Q 035887 251 SKKKFLLLLDDI 262 (886)
Q Consensus 251 ~~k~~LlVlDdv 262 (886)
++. =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34444544
No 356
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.92 E-value=0.07 Score=58.74 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=36.7
Q ss_pred CCccccchhhHHHHHHHHh-------c----C-------CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 153 EPTIVGLDSTFDKVWRCLI-------Q----E-------QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+..++|.++.++.+...+. . . ..+.|.++|++|+|||++|+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4568999999888876552 1 0 12578999999999999999998765
No 357
>PRK05922 type III secretion system ATPase; Validated
Probab=94.92 E-value=0.098 Score=57.73 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=51.3
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC--------CCCHH---
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGERIGFLE--------NRSLE--- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~~~~~--- 240 (886)
..-..++|+|..|+|||||++.+.+.. . .+...++-++. .......+.+......... +....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 355679999999999999999998764 1 23333333333 3334455545444332221 11111
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEccccc
Q 035887 241 ---EKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
..+-.+.+++ +++.+|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1222355555 47999999999953
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.086 Score=57.61 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ--LESVQEKIGERIGFLENRSLEEKASGIFKILSK 252 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 252 (886)
..++.++|++|+||||++.++.... ..... ..+..++. +.+. ....++..++.++.+. ..... ...+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~-~~~~G-~~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~-~~~~~-~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY-FLHMG-KSVSLYTT-DNYRIAAIEQLKRYADTMGMPF-YPVKD-IKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CeEEEecc-cchhhhHHHHHHHHHHhcCCCe-eehHH-HHHHHHHHHh
Confidence 4689999999999999999998754 11112 23444443 2222 2334444555555543 11111 2233334432
Q ss_pred -CcEEEEEccc
Q 035887 253 -KKFLLLLDDI 262 (886)
Q Consensus 253 -k~~LlVlDdv 262 (886)
..=++++|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 3345888843
No 359
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.90 E-value=0.23 Score=57.89 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...++|....+.++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35789999999998888764 334456799999999999999999875
No 360
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.89 E-value=0.077 Score=58.77 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=36.3
Q ss_pred CCccccchhhHHHHHHHHhc-------C---------CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ-------E---------QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+..++|.+..++.+...+.+ . ..+.|.++|++|+|||++|+.+....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999988887655421 0 12568899999999999999998765
No 361
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.89 E-value=0.11 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 362
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.042 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.|.|++|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.88 E-value=0.12 Score=52.99 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------------
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE------------------ 235 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 235 (886)
.-+++.|+|.+|+|||++|.++.... ...-..++|++..+. ..++.+++ ++++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 46899999999999999999986654 124567899988654 34454443 2332111
Q ss_pred ----CCCHHHHHHHHHHHhcc-CcEEEEEcccc
Q 035887 236 ----NRSLEEKASGIFKILSK-KKFLLLLDDIW 263 (886)
Q Consensus 236 ----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 263 (886)
....+++...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12234556666666654 55578888864
No 364
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.87 E-value=0.094 Score=55.79 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCC--------CCCHH---
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVS-KDMQLESVQEKIGERIGFLE--------NRSLE--- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~--------~~~~~--- 240 (886)
..-..++|+|..|.|||||++.+.+.. . -+..+..-+. +..+..++.......-+... +....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 345789999999999999999988765 2 2233334433 33455565555554432211 11111
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEccccc
Q 035887 241 ---EKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
...-.+.+++ +++.+|+++||+-.
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1122334444 47999999999853
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.86 E-value=0.23 Score=50.68 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
.-.++.|.|.+|.||||+|.++..... ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 457999999999999999998776541 2345788888644
No 366
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.86 E-value=0.15 Score=50.87 Aligned_cols=125 Identities=15% Similarity=0.212 Sum_probs=70.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE----------------------eCCCC-------------
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV----------------------VSKDM------------- 218 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~----------------------~s~~~------------- 218 (886)
.-.+++|+|+.|+|||||...+..-. + .-...+++. +-|.|
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld-~---pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD-K---PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc-C---CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 45689999999999999999987643 1 111222221 11111
Q ss_pred -----------CHHHHHHHHHHHhCCCC--------CCC-HHHHHHHHHHHhccCcEEEEEcccc---ch---hhhhhcc
Q 035887 219 -----------QLESVQEKIGERIGFLE--------NRS-LEEKASGIFKILSKKKFLLLLDDIW---ER---VDLAKLG 272 (886)
Q Consensus 219 -----------~~~~~~~~i~~~l~~~~--------~~~-~~~~~~~l~~~l~~k~~LlVlDdv~---~~---~~~~~l~ 272 (886)
...+....+++.++... ..+ -++..-.+.+.|-..+-+|+.|+-= |. ....++.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 12333444555555542 111 2223335667777888889988752 11 2222221
Q ss_pred CCCCCCCCCCcEEEEEcCChhhhhccCccceEEc
Q 035887 273 VPFPAISKNASKIVFTTRLENVCGLMETQKKFKV 306 (886)
Q Consensus 273 ~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 306 (886)
..+ ....|..||+.|-+..+|... ++.+.+
T Consensus 186 ~~~--~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 186 REL--NKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHH--HHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 111 234578899999999998853 344444
No 367
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.84 E-value=0.062 Score=50.01 Aligned_cols=75 Identities=24% Similarity=0.181 Sum_probs=44.9
Q ss_pred EEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEE
Q 035887 178 IGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLL 257 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~Ll 257 (886)
|.++|++|+|||+||+.++... -....-+.++...+..++....--. ..........+...+ .+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~-----~~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAM-----RKGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTH-----HEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeec-ccccccccccccccc-----cceeEE
Confidence 5699999999999999999886 1234456788877777776443221 110000000000000 178899
Q ss_pred EEccccc
Q 035887 258 LLDDIWE 264 (886)
Q Consensus 258 VlDdv~~ 264 (886)
|||++..
T Consensus 70 ~lDEin~ 76 (139)
T PF07728_consen 70 VLDEINR 76 (139)
T ss_dssp EESSCGG
T ss_pred EECCccc
Confidence 9999973
No 368
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.82 E-value=0.083 Score=58.84 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHH---
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLE--- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~--- 240 (886)
.+-..++|.|.+|+|||||+.++.... . +.+-+.++++-+.+.. ...++..++...=.... +.+..
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 456789999999999999999998887 2 2356777887776543 45556666554322111 11111
Q ss_pred ---HHHHHHHHHh---ccCcEEEEEcccc
Q 035887 241 ---EKASGIFKIL---SKKKFLLLLDDIW 263 (886)
Q Consensus 241 ---~~~~~l~~~l---~~k~~LlVlDdv~ 263 (886)
..+-.+.+++ +++.+|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1233455666 3789999999994
No 369
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.82 E-value=0.2 Score=48.86 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.|++|+|+.|+|||||.+.+..=.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 45799999999999999999886543
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.82 E-value=0.02 Score=51.18 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=19.6
Q ss_pred EEEEcCCCchhHHHHHHHHHhhccCCCCCCe
Q 035887 178 IGLHGMGGVGKTTLLTQINNKFLDAPNNFEV 208 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 208 (886)
|.|+|.+|+||||+|+.+.... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 5799999999999999999887 566754
No 371
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.045 Score=52.21 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM--QLESVQEKIGERIGFLE-NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l 250 (886)
.-.+++|+|..|.|||||++.+.... ......+++...... ...... ..+.... -..-+...-.+...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQLSGGQRQRVALARAL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHHH----hceEEEeeCCHHHHHHHHHHHHH
Confidence 34789999999999999999998875 234445554322111 111111 1111100 011222333455666
Q ss_pred ccCcEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCChhhhhc
Q 035887 251 SKKKFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRLENVCGL 297 (886)
Q Consensus 251 ~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~ 297 (886)
...+=++++|+.-. ......+...+......+..++++|.+.+....
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 66788999998853 222222222221011225678888887766543
No 372
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.82 E-value=1.1 Score=47.49 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHH
Q 035887 161 STFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESV 223 (886)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (886)
+....++..+.. .+-|.|.|++|+||||+|+.+.... ... .+.|.++...+..++
T Consensus 52 ~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 52 ATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred HHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhc
Confidence 344556666643 3468899999999999999999987 222 234555554444333
No 373
>PRK04328 hypothetical protein; Provisional
Probab=94.81 E-value=0.11 Score=53.64 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD 217 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 217 (886)
.-+++.|.|.+|.|||+||.++.... ...-+.++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 46799999999999999999977664 233567888887653
No 374
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.79 E-value=0.025 Score=56.86 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 375
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.78 E-value=0.054 Score=56.38 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=59.9
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 035887 157 VGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLEN 236 (886)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 236 (886)
.|...+..+.+..+......+|.|.|+.|.||||+++.+.+.. ...-..++.+.-..++....+ .++... .
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~~-----~q~~v~-~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPGI-----NQVQVN-E 132 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCCc-----eEEEeC-C
Confidence 4554444444444444456789999999999999999887765 111122333321111111100 111111 1
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEccccchhhhhh
Q 035887 237 RSLEEKASGIFKILSKKKFLLLLDDIWERVDLAK 270 (886)
Q Consensus 237 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 270 (886)
.......+.++..++..+=.++++++.+.+....
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 1112355667788888899999999998775443
No 376
>PRK08149 ATP synthase SpaL; Validated
Probab=94.78 E-value=0.12 Score=57.02 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC--------CCCH----
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGERIGFLE--------NRSL---- 239 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~~~~---- 239 (886)
.+-..++|+|..|+|||||++.++... .-+.++...+.. ..+...+..+......... +...
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 356789999999999999999988754 223334444433 3355566666655432211 1111
Q ss_pred --HHHHHHHHHHh--ccCcEEEEEccccc
Q 035887 240 --EEKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 240 --~~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
...+..+.+++ +++.+||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11223344554 47999999999953
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.76 E-value=0.11 Score=52.86 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKI 227 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (886)
.-.++.|.|..|.||||+|.++..... ..-..+++++... ...++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL---QNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEeCCC--CHHHHHHHH
Confidence 356999999999999999877665541 1224567776433 445555555
No 378
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.76 E-value=0.085 Score=54.28 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCceEEEEEcCCCchhHHHH-HHHHHhhccCCCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHHH
Q 035887 173 EQVGIIGLHGMGGVGKTTLL-TQINNKFLDAPNNFEVV-IWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLEE 241 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~ 241 (886)
.+-.-++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. ...++.+++.+.=.... +.....
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 35578999999999999996 5565543 22333 566665553 45566666554321111 111111
Q ss_pred ------HHHHHHHHh--ccCcEEEEEccccch-hhhhhc
Q 035887 242 ------KASGIFKIL--SKKKFLLLLDDIWER-VDLAKL 271 (886)
Q Consensus 242 ------~~~~l~~~l--~~k~~LlVlDdv~~~-~~~~~l 271 (886)
.+-.+.+++ +++.+|+++||+-.. ..+.++
T Consensus 142 r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 142 QYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 112333443 478999999999543 344444
No 379
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.74 E-value=0.11 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++++|.|+.|.|||||++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999987543
No 380
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.74 E-value=0.025 Score=55.81 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 381
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.74 E-value=0.11 Score=51.44 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCC-------CCeEEEEEeCCC
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNN-------FEVVIWVVVSKD 217 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------F~~~~wv~~s~~ 217 (886)
-.++.|+|++|+||||++..+.......... -..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3588899999999999999988887321111 236888876655
No 382
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.12 Score=52.54 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCC----------CCC---CeEEEEEe----CCCC--C---------------
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAP----------NNF---EVVIWVVV----SKDM--Q--------------- 219 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~~F---~~~~wv~~----s~~~--~--------------- 219 (886)
.-.+++|+|+.|.|||||.+.+..-....+ ..+ ..+.||.= ...| .
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 347999999999999999999988331000 011 34666631 1111 0
Q ss_pred -------HHHHHHHHHHHhCCCC-------CCCHHHH-HHHHHHHhccCcEEEEEccccc------hhhhhhccCCCCCC
Q 035887 220 -------LESVQEKIGERIGFLE-------NRSLEEK-ASGIFKILSKKKFLLLLDDIWE------RVDLAKLGVPFPAI 278 (886)
Q Consensus 220 -------~~~~~~~i~~~l~~~~-------~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~------~~~~~~l~~~~~~~ 278 (886)
-.+...+.++.++... ..+--+. .-.|.+.|..++=|++||.--. .....++...+.
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~-- 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR-- 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--
Confidence 1234444555555433 2222232 3356677888999999997542 233333333332
Q ss_pred CCCCcEEEEEcCChhhh
Q 035887 279 SKNASKIVFTTRLENVC 295 (886)
Q Consensus 279 ~~~gs~iiiTtR~~~v~ 295 (886)
..|.-|+++|-+-+..
T Consensus 187 -~eg~tIl~vtHDL~~v 202 (254)
T COG1121 187 -QEGKTVLMVTHDLGLV 202 (254)
T ss_pred -HCCCEEEEEeCCcHHh
Confidence 2388899999986543
No 383
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.70 E-value=0.23 Score=56.71 Aligned_cols=130 Identities=20% Similarity=0.181 Sum_probs=67.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCC-----CCCeEEEEEeCCC---------------C-C-HHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPN-----NFEVVIWVVVSKD---------------M-Q-LESVQEKIGERI 231 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~F~~~~wv~~s~~---------------~-~-~~~~~~~i~~~l 231 (886)
.-..|+|+|+.|+|||||.+.+........+ .--.+.|+.-... + + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4567999999999999999999765511111 1112333321110 0 0 123334444444
Q ss_pred CCCC--------CCCHHH-HHHHHHHHhccCcEEEEEccccch---hhhhhccCCCCCCCCCCcEEEEEcCChhhhhccC
Q 035887 232 GFLE--------NRSLEE-KASGIFKILSKKKFLLLLDDIWER---VDLAKLGVPFPAISKNASKIVFTTRLENVCGLME 299 (886)
Q Consensus 232 ~~~~--------~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~ 299 (886)
+.+. ..+.-+ ..-.+...+-.++=+||||.--+. +..+.+...+. .-...||+.|-++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~---~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL---DFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhc
Confidence 4332 111111 222344555678889999976543 22222222222 11235888888888766543
Q ss_pred ccceEEcc
Q 035887 300 TQKKFKVE 307 (886)
Q Consensus 300 ~~~~~~l~ 307 (886)
.+.+.+.
T Consensus 504 -~~i~~~~ 510 (530)
T COG0488 504 -TRIWLVE 510 (530)
T ss_pred -ceEEEEc
Confidence 3444444
No 384
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.70 E-value=0.016 Score=34.42 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=16.4
Q ss_pred CCcEEEccCCCcccccCccccCc
Q 035887 557 SLKVLNLSKNRSLSQLPSGVSKL 579 (886)
Q Consensus 557 ~Lr~L~Ls~~~~i~~lp~~i~~L 579 (886)
+|++||+++| .++.+|++|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 4788888888 777888776653
No 385
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.68 E-value=0.11 Score=57.72 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHH---
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLE--- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~--- 240 (886)
..-.-++|.|..|+|||||+.++.... .. .+-+.++++-+.+.. .+.++.+++...=.... +....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 456789999999999999999987776 21 222457777776543 45666666655322111 22111
Q ss_pred ---HHHHHHHHHh---ccCcEEEEEccccc
Q 035887 241 ---EKASGIFKIL---SKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ---~~~~~l~~~l---~~k~~LlVlDdv~~ 264 (886)
..+-.+.+++ +++.+||++||+-.
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1233466666 57999999999953
No 386
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.68 E-value=0.064 Score=54.70 Aligned_cols=84 Identities=26% Similarity=0.270 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCC-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----------------
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNN-FEVVIWVVVSKDMQLESVQEKIGERIGFLE----------------- 235 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------------- 235 (886)
.-+++.|.|.+|+|||++|.++.... ... -+.++|++.... ...+.+.+- +++...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 56899999999999999999966554 123 457888887554 344443322 332110
Q ss_pred -----CCCHHHHHHHHHHHhcc-CcEEEEEcccc
Q 035887 236 -----NRSLEEKASGIFKILSK-KKFLLLLDDIW 263 (886)
Q Consensus 236 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 263 (886)
..+.+++...+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 13566677777776665 55788888763
No 387
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.68 E-value=0.15 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998776
No 388
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.67 E-value=0.053 Score=49.39 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=29.0
Q ss_pred hHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 162 TFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.+++-+.|.. ..-.+|.+.|.-|.||||+++.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44444444443 245689999999999999999999886
No 389
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.67 E-value=0.044 Score=58.19 Aligned_cols=145 Identities=18% Similarity=0.264 Sum_probs=79.3
Q ss_pred cccchhhHHHHHHHHhc-----------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCC--C---CeEEEE-
Q 035887 156 IVGLDSTFDKVWRCLIQ-----------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNN--F---EVVIWV- 212 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F---~~~~wv- 212 (886)
+.|...+...|.+.... ..-.+++|+|..|.||||+.+++.... ..... + ...+-+
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~-~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-KGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh-hcccccccCCCCCceecc
Confidence 34556666666665532 134689999999999999999988765 11111 0 011111
Q ss_pred --------EeC--CCCCHHHHHHH-------------HHHHhCCCC----------CCCHHHHHHHHHHHhccCcEEEEE
Q 035887 213 --------VVS--KDMQLESVQEK-------------IGERIGFLE----------NRSLEEKASGIFKILSKKKFLLLL 259 (886)
Q Consensus 213 --------~~s--~~~~~~~~~~~-------------i~~~l~~~~----------~~~~~~~~~~l~~~l~~k~~LlVl 259 (886)
.-+ ..++-..++.+ |++..+..+ -.+.+.-..+|.+.+..+.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 111 11222233333 334444333 112222334677888888889999
Q ss_pred ccccch---hh----hhhccCCCCCCCCCCcEEEEEcCChhhhhccCccceE
Q 035887 260 DDIWER---VD----LAKLGVPFPAISKNASKIVFTTRLENVCGLMETQKKF 304 (886)
Q Consensus 260 Ddv~~~---~~----~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~ 304 (886)
|..... .. ..++... ....|+.+++.|+.+++.+.+..+..+
T Consensus 532 DEF~AhLD~~TA~rVArkisel---aRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISEL---AREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHH---HHHhCCeEEEEecCHHHHhccCCceeE
Confidence 987532 11 1111111 223567788888888887776655544
No 390
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.66 E-value=0.1 Score=58.15 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--NRSLEEKASGIFKILS 251 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l~ 251 (886)
.+++.++|++|+||||++..+.... ........+..|+..... ....-+....+.++.+. ..+..++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 3699999999999999999988776 201233467777653321 12223344445555443 3344455555543 22
Q ss_pred cCcEEEEEccc
Q 035887 252 KKKFLLLLDDI 262 (886)
Q Consensus 252 ~k~~LlVlDdv 262 (886)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888866
No 391
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.65 E-value=0.065 Score=54.77 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred EEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe
Q 035887 180 LHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV 214 (886)
Q Consensus 180 I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 214 (886)
|+||+|+||||+++.+.+.. . .....++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~-~--~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL-E--SNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH-T--TT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHH-H--hccCCceEEEc
Confidence 68999999999999999987 2 23334455543
No 392
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.65 E-value=0.19 Score=51.13 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 393
>PRK05439 pantothenate kinase; Provisional
Probab=94.63 E-value=0.16 Score=53.61 Aligned_cols=81 Identities=22% Similarity=0.171 Sum_probs=45.3
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHH--HHHHHhCCCCCCCHHHHHHHHHHHh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQE--KIGERIGFLENRSLEEKASGIFKIL 250 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~l~~~l 250 (886)
+..-+|+|.|.+|+||||+|+.+.... ........+.-++...-+-....+. .+...-+.+..-+.+.+...|....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHH
Confidence 456799999999999999999988765 2111122344444433322222221 1121222333446666666666666
Q ss_pred ccCc
Q 035887 251 SKKK 254 (886)
Q Consensus 251 ~~k~ 254 (886)
.++.
T Consensus 163 ~G~~ 166 (311)
T PRK05439 163 SGKP 166 (311)
T ss_pred cCCC
Confidence 5554
No 394
>PRK03839 putative kinase; Provisional
Probab=94.63 E-value=0.026 Score=55.23 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.5
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 395
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.61 E-value=0.023 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEcCCCchhHHHHHHHHHhh
Q 035887 178 IGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|-|+|++|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988877
No 396
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=1.7 Score=43.18 Aligned_cols=45 Identities=27% Similarity=0.283 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++=|.|-.++++.+...- +..+-|.++|++|.|||-||++|.++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 345667666666655431 356778899999999999999999987
No 397
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.56 E-value=0.19 Score=50.93 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44689999999999999999998764
No 398
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.54 E-value=0.16 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|..|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998864
No 399
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.51 E-value=0.18 Score=56.81 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD 217 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 217 (886)
.-+++.|.|.+|+|||||+.++..... ..-..++|++..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc
Confidence 457999999999999999999988762 23356888876543
No 400
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.96 Score=46.17 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHhc---------C---CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ---------E---QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
+++.|.+..++.|.+...- + ..+-|.++|++|.||+.||++|+... ...| ++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF-----FSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF-----FSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce-----EEeehH----
Confidence 4568888888888776431 1 35789999999999999999999886 2333 344432
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-cCcEEEEEccccch---------hhhhhc----cCCCCC--CCCCCcEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILS-KKKFLLLLDDIWER---------VDLAKL----GVPFPA--ISKNASKI 285 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---------~~~~~l----~~~~~~--~~~~gs~i 285 (886)
++....+ -..+.++..|.+.-+ .|+-+|++|.++.. +.-..+ ...... ....|--|
T Consensus 201 DLvSKWm--------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 201 DLVSKWM--------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHHHHh--------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 2222211 122444555555443 68899999999631 111111 111111 22334445
Q ss_pred EEEcCChhhhhcc---CccceEEccCCChHHHH-HHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 286 VFTTRLENVCGLM---ETQKKFKVECLGDNEAW-ELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 286 iiTtR~~~v~~~~---~~~~~~~l~~L~~~e~~-~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
+-.|...-+.... .-.+.|-+ ||.+..|. .+|+-+.+... +.--++.-+++.++..|..
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 5566654442211 11123333 34455554 46766666433 1222344566777776654
No 401
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.50 E-value=0.093 Score=57.89 Aligned_cols=88 Identities=26% Similarity=0.286 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------CCCHHH---
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE--------NRSLEE--- 241 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~~~~--- 241 (886)
..-..++|+|..|+|||||++.+.... + ....++.....+.....++.++.+..-+... +.....
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~-~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNT-D---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 345789999999999999999888765 1 2223333333334445555555444322211 111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccccc
Q 035887 242 ---KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 242 ---~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
.+-.+.+++ +++.+|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122345555 47899999999853
No 402
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.0055 Score=58.59 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=42.0
Q ss_pred CCCCccEEEeccCCccccC--cccc-cCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccc
Q 035887 747 GFNSLQRVTIACCSRLREV--TWLV-FAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKI 819 (886)
Q Consensus 747 ~~~~L~~L~L~~c~~l~~l--~~l~-~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~ 819 (886)
.++.|+.|.+.+|..+.+. .-++ -.|+|+.|+|++|+.|++-.- .++..|++|+.|.|.+++....
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-------~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-------ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------HHHHHhhhhHHHHhcCchhhhc
Confidence 4566667777777665542 2222 347777777777777776432 3566777777777777765554
No 403
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.48 E-value=0.095 Score=47.89 Aligned_cols=102 Identities=19% Similarity=0.336 Sum_probs=49.0
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCccccchh-hhccCCCc
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSIKELPHE-LKALTKLK 606 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~ 606 (886)
..|++|+.+.+.. .+..++...|.+++.|+.+.+.++ +..++ ..+.++.+|+++.+.+ .+..++.. +..+.+|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 3455666666654 355666666777767777777654 33333 2455565677777755 45555443 45567777
Q ss_pred EeeccccccccccccccccCCCCCCEEEecc
Q 035887 607 CLNLEYTRYLQKIPRQLLCSFSGLEVLRMLD 637 (886)
Q Consensus 607 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 637 (886)
.+++..+ +..++...+.+. +|+.+.+..
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 7776543 455666556665 677666553
No 404
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.48 E-value=0.17 Score=45.21 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=34.9
Q ss_pred ccccchhhHHHHHHHHhc-------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|-.-..+.+++.+.+ .+.=|++..|+.|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467766666666666653 356799999999999999999988884
No 405
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.48 E-value=0.11 Score=49.54 Aligned_cols=112 Identities=18% Similarity=0.109 Sum_probs=61.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE---eCCCCCHHHHHHHHHHHh-----CCC--C-CCC-----
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV---VSKDMQLESVQEKIGERI-----GFL--E-NRS----- 238 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l-----~~~--~-~~~----- 238 (886)
...|-|++..|.||||.|..+.-+. ..+-..++.+. .....+....+... .+ +.. . ..+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra---~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA---LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 3678889999999999999988776 23333444333 33233444444432 11 110 0 111
Q ss_pred --HHHHHHHHHHHhccCcE-EEEEccccchh-----hhhhccCCCCCCCCCCcEEEEEcCCh
Q 035887 239 --LEEKASGIFKILSKKKF-LLLLDDIWERV-----DLAKLGVPFPAISKNASKIVFTTRLE 292 (886)
Q Consensus 239 --~~~~~~~l~~~l~~k~~-LlVlDdv~~~~-----~~~~l~~~~~~~~~~gs~iiiTtR~~ 292 (886)
..+..+..++.+...+| |+|||.+-... +.+++...+. ....+..||+|-|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCC
Confidence 11222334455555444 99999985332 2223333333 344567899999985
No 406
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.47 E-value=0.057 Score=56.39 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHH
Q 035887 164 DKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKA 243 (886)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 243 (886)
..+++.+...+.+ +.++|+.|+|||++++...... .. ..| .+.-++.|.......+++.+-..+....
T Consensus 23 ~~ll~~l~~~~~p-vLl~G~~GtGKT~li~~~l~~l-~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~-------- 90 (272)
T PF12775_consen 23 SYLLDLLLSNGRP-VLLVGPSGTGKTSLIQNFLSSL-DS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRR-------- 90 (272)
T ss_dssp HHHHHHHHHCTEE-EEEESSTTSSHHHHHHHHHHCS-TT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECT--------
T ss_pred HHHHHHHHHcCCc-EEEECCCCCchhHHHHhhhccC-Cc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCC--------
Confidence 4455666555544 4799999999999999988765 21 221 2444555554333333322211111000
Q ss_pred HHHHHHhccCcEEEEEcccc
Q 035887 244 SGIFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 244 ~~l~~~l~~k~~LlVlDdv~ 263 (886)
.....--.+|+.++++||+.
T Consensus 91 ~~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 91 GRVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp TEEEEEESSSEEEEEEETTT
T ss_pred CCCCCCCCCcEEEEEecccC
Confidence 00000013588899999995
No 407
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.45 E-value=0.25 Score=55.67 Aligned_cols=50 Identities=28% Similarity=0.324 Sum_probs=35.1
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 164 DKVWRCLIQE--QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
..+-+.|..+ .-+++.|.|.+|+|||||+.++..... ..-..++|++..+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EE 132 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEE 132 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcC
Confidence 3444444332 457999999999999999999987762 2224688887654
No 408
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.44 E-value=0.26 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEcCCCchhHHHHHHHHHhh
Q 035887 178 IGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999886
No 409
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.43 E-value=0.044 Score=51.40 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV 213 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 213 (886)
..||-|.|.+|.||||||+.+.... ...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3689999999999999999999998 23345566665
No 410
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.42 E-value=0.19 Score=55.96 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCchhHHHH-HHHHHhhccC-----CCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC-CC--------CC
Q 035887 173 EQVGIIGLHGMGGVGKTTLL-TQINNKFLDA-----PNNFEVVIWVVVSKDMQLESVQEKIGERIGF-LE--------NR 237 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~--------~~ 237 (886)
++-.-++|.|..|+|||+|| -.+.+.. .+ .++-+.++++-+.+......-+.+.+++-+. .. +.
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 35577899999999999997 5566654 21 1244578888888776544334455554441 11 11
Q ss_pred CHHH------HHHHHHHHh--ccCcEEEEEccccc
Q 035887 238 SLEE------KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 238 ~~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
.... ..-.+.+++ +++.+|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 122344444 47899999999964
No 411
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.41 E-value=0.034 Score=56.31 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.|.|++|+||||+|+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 412
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.39 E-value=0.051 Score=60.92 Aligned_cols=97 Identities=25% Similarity=0.208 Sum_probs=52.9
Q ss_pred HHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEE-EEEeCCCC-CHHHHHHHHHHHhCCCC-CCCH-
Q 035887 165 KVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVI-WVVVSKDM-QLESVQEKIGERIGFLE-NRSL- 239 (886)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~s~~~-~~~~~~~~i~~~l~~~~-~~~~- 239 (886)
++++.+.. +.-.-..|+|++|+|||||++.+.+... ..+-+..+ .+-|.+.. .+.++.+.+-..+-... ....
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 34444443 4556789999999999999999998762 22334443 33344432 23333333200010000 1111
Q ss_pred -----HHHHHHHHHHh--ccCcEEEEEcccc
Q 035887 240 -----EEKASGIFKIL--SKKKFLLLLDDIW 263 (886)
Q Consensus 240 -----~~~~~~l~~~l--~~k~~LlVlDdv~ 263 (886)
..+.-.+.+++ +++.+||++|++-
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 12222344444 5799999999985
No 413
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.39 E-value=0.17 Score=51.48 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|.|+.|.|||||++.+....
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998865
No 414
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.35 E-value=0.063 Score=51.61 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=33.3
Q ss_pred cccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 156 IVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+||.+..+.++.+.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887764 233555699999999999999999865
No 415
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.35 E-value=0.073 Score=62.09 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=57.8
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
+.++|.++.++.+...+... +.+.++|++|+||||+|+.+.+.. . ..+++..+|..- ...+...+++.+..+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 46799999888888877655 468899999999999999999876 2 345678888765 344677778888776653
No 416
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.34 E-value=0.19 Score=54.15 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=34.3
Q ss_pred cccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 156 IVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++|....+.++.+.+.. ....-|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 46777777777777654 234456799999999999999998765
No 417
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.054 Score=52.88 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998764
No 418
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.46 Score=54.32 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=90.5
Q ss_pred CccccchhhHHH---HHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDK---VWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.++.|.|+.+++ ++++|.+. =++-+..+|++|.|||.||+++.... .+ .|- +.|.. +
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PFf-----~iSGS-~-- 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PFF-----SISGS-D-- 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cce-----eccch-h--
Confidence 456898876655 55566652 13567899999999999999999987 33 221 11111 0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch------------h----hhhhccCCCCCCCC-CCcE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER------------V----DLAKLGVPFPAISK-NASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~----~~~~l~~~~~~~~~-~gs~ 284 (886)
..+.+- ........+...+..+.-++++++|.++.. . .+.++..-...... .|-.
T Consensus 219 -----FVemfV---GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 219 -----FVEMFV---GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred -----hhhhhc---CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceE
Confidence 000000 111122223333444566899999987631 1 23333222220111 2333
Q ss_pred EEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 285 IVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 285 iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
|+-.|-..+|... + .-++.+.++..+-..-.+.++-++........-++. .|++.+-|.-.|
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcccc
Confidence 3444544555321 1 224466666666677777777666443322222332 277777776554
No 419
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.30 E-value=0.13 Score=56.78 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=54.5
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHHH--
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLEE-- 241 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~-- 241 (886)
.+-..++|.|..|+|||||.+.+++.. .-+.++++-+.+.. ...++.+..+..-+... +.....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 356789999999999999999998876 22566777676553 44454544333221111 111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEccccc
Q 035887 242 ----KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 242 ----~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
.+-.+.+++ +++.+|+++||+-.
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122344555 47999999999953
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.28 E-value=0.06 Score=49.98 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=28.4
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999982 24555555666555
No 421
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.27 E-value=0.21 Score=50.71 Aligned_cols=25 Identities=44% Similarity=0.590 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-.+++|+|..|.|||||++.+....
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999864
No 422
>PRK04040 adenylate kinase; Provisional
Probab=94.27 E-value=0.038 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999886
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.18 Score=59.54 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ--LESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
..||+++|+.|+||||.+.++.... ........+..++.. .+. ..+-++...+.++.+. ..+..++.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-h
Confidence 4699999999999999999988776 211222355555543 333 4455666666666544 3455555444443 3
Q ss_pred ccCcEEEEEcccc
Q 035887 251 SKKKFLLLLDDIW 263 (886)
Q Consensus 251 ~~k~~LlVlDdv~ 263 (886)
+++ =++++|=..
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 333 366666554
No 424
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.25 E-value=0.13 Score=51.35 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998886
No 425
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.24 E-value=0.12 Score=56.24 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcC--------------CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQE--------------QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.++.++.+..++... ....|.++|++|+||||+|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999888777430 13678999999999999999998876
No 426
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.23 E-value=0.075 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.|.|.|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999987
No 427
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.23 E-value=0.17 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999764
No 428
>PRK00625 shikimate kinase; Provisional
Probab=94.22 E-value=0.035 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 429
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.20 E-value=0.084 Score=52.03 Aligned_cols=43 Identities=33% Similarity=0.424 Sum_probs=31.6
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.|+|+|-||+||||+|..+..... ..+-..+.-|....++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCChH
Confidence 689999999999999999766662 2232457777777766644
No 430
>PRK06217 hypothetical protein; Validated
Probab=94.19 E-value=0.073 Score=52.22 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=26.1
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCC--CeEEEE
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNF--EVVIWV 212 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv 212 (886)
.|.|.|.+|+||||+|+++.... . ..+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~-~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-D-IPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-CcEEEcCceeec
Confidence 48999999999999999999886 2 2233 455664
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.17 E-value=0.24 Score=52.98 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHH--HHHHHHHHhCCCC-----CCCHHH-HHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLES--VQEKIGERIGFLE-----NRSLEE-KASG 245 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~-----~~~~~~-~~~~ 245 (886)
...+|+++|++|+||||++..++... . ..-..+..+.. +.+.... -+.......+.+. ..+... ..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l-~--~~g~~V~Li~~-D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY-K--AQGKKVLLAAG-DTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCeEEEEec-CccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 46899999999999999999999887 2 22234555543 3333221 1222333333322 122222 2233
Q ss_pred HHHHhccCcEEEEEcccc
Q 035887 246 IFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 246 l~~~l~~k~~LlVlDdv~ 263 (886)
+.....+..=++++|-..
T Consensus 189 l~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 189 IQAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHHhCCCCEEEEeCCC
Confidence 444444444577788764
No 432
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.16 E-value=0.18 Score=50.40 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999988764
No 433
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.15 E-value=0.13 Score=52.56 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=57.1
Q ss_pred ccccchhhHHHHHHHHhc-------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKI 227 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (886)
.++|-.-.++.|+..+.+ .+.=|++.+|..|.||.-+++.+.++..+..-.-+.+- ..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~---------------~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH---------------HF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH---------------Hh
Confidence 467766666667776654 25669999999999999999999998733221111111 11
Q ss_pred HHHhCCCCCCC----HHHHHHHHHHHhc-cCcEEEEEccccc
Q 035887 228 GERIGFLENRS----LEEKASGIFKILS-KKKFLLLLDDIWE 264 (886)
Q Consensus 228 ~~~l~~~~~~~----~~~~~~~l~~~l~-~k~~LlVlDdv~~ 264 (886)
...+.-+.... .+++...+++..+ -+|-|+|+|+++.
T Consensus 148 vat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DK 189 (344)
T KOG2170|consen 148 VATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDK 189 (344)
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhh
Confidence 11111111111 2334444444444 3899999999974
No 434
>PRK05973 replicative DNA helicase; Provisional
Probab=94.15 E-value=0.29 Score=49.67 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKI 227 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (886)
.-.++.|.|.+|+|||++|.++..... ..-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 457889999999999999999877651 23456778776544 44444443
No 435
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.041 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 436
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.12 E-value=0.032 Score=55.57 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|+.|+||||+|+.+..-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 437
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.11 E-value=0.18 Score=51.38 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998854
No 438
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.10 E-value=2.6 Score=44.56 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhc-------cCCCCCCeEEEEEe-CCCCCHHHHHHHHHHHhCC
Q 035887 163 FDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFL-------DAPNNFEVVIWVVV-SKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 163 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~-------~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 233 (886)
++.+.+.+..++. .+..++|..|.||+++|..+.+... ....+-+.+.++.. +......++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4455566666555 5666999999999999999887751 01112223333432 1222222222 22222211
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCC-hhhh-hccCccceEEccCC
Q 035887 234 LENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRL-ENVC-GLMETQKKFKVECL 309 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~-~~v~-~~~~~~~~~~l~~L 309 (886)
. ..-.+.+=++|+||+... .....+...+. .....+.+|++|.+ ..+. ...+....+++.++
T Consensus 84 ~-------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 84 S-------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred C-------------CcccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 1 001146678888888643 23334433443 33455666655544 3343 22345678999999
Q ss_pred ChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 310 GDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 310 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
++++..+.+... + . + .+.+..++...+|.--|+..
T Consensus 150 ~~~~l~~~l~~~-~--~---~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSK-N--K---E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHc-C--C---C---hhHHHHHHHHcCCHHHHHHH
Confidence 999998777654 1 1 1 23366667677763344443
No 439
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.09 E-value=0.17 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|.|+.|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998753
No 440
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.08 E-value=0.19 Score=60.52 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|+...+.++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3589999888888776653 334567899999999999999998865
No 441
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.07 E-value=0.31 Score=55.83 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=41.7
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 164 DKVWRCLIQE--QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..+-+.|..+ .-+++.|.|++|+|||||+.++.... ...-+.+++++..+. ..++...+ +.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eEs--~~~i~~~~-~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAYEES--RAQLLRNA-YSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCC--HHHHHHHH-HHcC
Confidence 3444445442 56899999999999999999998876 234467788776443 44444442 4444
No 442
>PTZ00494 tuzin-like protein; Provisional
Probab=94.04 E-value=1.1 Score=48.58 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=99.9
Q ss_pred CCccccchhhHHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
..++|.|+.+-..+-+.|.+ ...+++.+.|.-|.||++|.+...... . -..++|.+... ++-++.|++
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 35679998887777777765 478999999999999999999887765 2 23567776544 556788999
Q ss_pred HhCCCCCCCHHHHHHHHHH-------HhccCcEEEEE--ccccchh-hhhhccCCCCCCCCCCcEEEEEcCChhhhhc--
Q 035887 230 RIGFLENRSLEEKASGIFK-------ILSKKKFLLLL--DDIWERV-DLAKLGVPFPAISKNASKIVFTTRLENVCGL-- 297 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~-------~l~~k~~LlVl--Ddv~~~~-~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~-- 297 (886)
.++.+..+...++.+.+.+ ...++.-+||+ -+-.+.. ...+. ..+. ....-+.|++----+.+...
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLa-cDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLV-SDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHH-ccchhheeeeechHhhhchhhc
Confidence 9998763222223332222 23445555554 3332221 11111 1111 34456778776655544221
Q ss_pred -cCccceEEccCCChHHHHHHHHHHh
Q 035887 298 -METQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 298 -~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
...-..|.+++++.++|.++.++..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 1234578999999999999887754
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.04 E-value=0.22 Score=55.87 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM--QLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
..|++++|+.|+||||++.+++... ..+.....+..+... .+ ...+-++...+.++.+. ..+..+....+ ..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L 332 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SEL 332 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhc
Confidence 4799999999999999999999876 222222345555543 23 23333445555555443 12222222222 223
Q ss_pred ccCcEEEEEcccc
Q 035887 251 SKKKFLLLLDDIW 263 (886)
Q Consensus 251 ~~k~~LlVlDdv~ 263 (886)
+++ -.+++|-..
T Consensus 333 ~d~-d~VLIDTaG 344 (484)
T PRK06995 333 RNK-HIVLIDTIG 344 (484)
T ss_pred cCC-CeEEeCCCC
Confidence 333 366667654
No 444
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.03 E-value=0.068 Score=52.45 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV 214 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 214 (886)
.++|.|+|+.|+|||||++.+.... ...|..+++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567765555553
No 445
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.15 Score=56.63 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=51.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC--------CCCH-H--
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE--------NRSL-E-- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--------~~~~-~-- 240 (886)
..-..++|+|..|+|||||++.+.... ..+.++...+... .+...+...+...-+... +... .
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 355789999999999999999987654 2234444444433 245555555544432221 1111 1
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEccccc
Q 035887 241 ---EKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 241 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
..+..+.+++ +++.+|+++||+-.
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1122344555 47999999999954
No 446
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.01 E-value=0.19 Score=55.73 Aligned_cols=90 Identities=28% Similarity=0.366 Sum_probs=58.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHH---
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLE--- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~--- 240 (886)
..-..++|.|.+|+|||+|+.++.... . +.+-+.++++-+.+.. ...++.+++...=.... +...-
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 355789999999999999999988876 2 2234678888876654 45556666554321111 11111
Q ss_pred ---HHHHHHHHHhc---cCcEEEEEccccc
Q 035887 241 ---EKASGIFKILS---KKKFLLLLDDIWE 264 (886)
Q Consensus 241 ---~~~~~l~~~l~---~k~~LlVlDdv~~ 264 (886)
..+-.+.++++ ++.+|+++||+-.
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12234566665 5899999999954
No 447
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.00 E-value=0.037 Score=54.00 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 448
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.98 E-value=0.35 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999988764
No 449
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.98 E-value=0.25 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.1
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 450
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.98 E-value=0.23 Score=48.68 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998865
No 451
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.98 E-value=0.2 Score=55.34 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCC--CCCC---------eEEEEEeCCCCCHHHHHHHHHHHhC-CCC-----
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAP--NNFE---------VVIWVVVSKDMQLESVQEKIGERIG-FLE----- 235 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~----- 235 (886)
..-.-++|.|..|+|||||+.++.+.. ... ...| .++++-+.+.....+.+.+.+..-+ ...
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 456789999999999999999988876 210 0012 5677777877666666666666555 221
Q ss_pred ---CCCHHH------HHHHHHHHhc---cCcEEEEEcccc
Q 035887 236 ---NRSLEE------KASGIFKILS---KKKFLLLLDDIW 263 (886)
Q Consensus 236 ---~~~~~~------~~~~l~~~l~---~k~~LlVlDdv~ 263 (886)
+...-+ .+-.+.++++ ++.+|+++||+-
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 111111 2224666666 589999999994
No 452
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.97 E-value=0.085 Score=60.90 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=38.0
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+++|.+..++.+...+......-|.|+|+.|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999887766555667899999999999999998753
No 453
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.97 E-value=0.19 Score=56.07 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------CCCH-----
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE--------NRSL----- 239 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~~----- 239 (886)
..-.+++|+|..|+|||||++.+.... .. -..++++.--+..+..++..+.+..-.... +...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-SA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-CC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 466899999999999999999888765 21 223444433333344544433222111100 1111
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEcccc
Q 035887 240 -EEKASGIFKIL--SKKKFLLLLDDIW 263 (886)
Q Consensus 240 -~~~~~~l~~~l--~~k~~LlVlDdv~ 263 (886)
...+-.+.+++ +++.+|+++||+-
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 11222344555 4799999999984
No 454
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.95 E-value=1.5 Score=46.88 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=35.8
Q ss_pred eEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 303 KFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 303 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
++++++++.+|+..++..............-+...+++.--.+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988855442222344556677777779998644
No 455
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.94 E-value=0.38 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 456
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.086 Score=47.87 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+-|.|.|-+|+||||+|..+....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4568899999999999999998654
No 457
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.92 E-value=0.14 Score=56.74 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=53.2
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------CCCHH----
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE--------NRSLE---- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~~~---- 240 (886)
.+-..++|.|..|+|||||++.+.... .. -..+++..-.+.....++.+.+...-+... +....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 456789999999999999999998765 21 124444444444455555555544322111 11111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEccccc
Q 035887 241 --EKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 241 --~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
...-.+.+++ +++.+|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122344555 47899999999853
No 458
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.91 E-value=0.16 Score=59.54 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=52.5
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
+.++|.++.++.+...+.... .+.++|++|+||||+|+.+.+.. . ...|..++++.-+ ..+...+++.++.+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 467899988888877776643 55599999999999999999877 2 2344444444322 23455667777777664
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.90 E-value=0.1 Score=56.70 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcc
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE-SVQEKIGERIGFLENRSLEEKASGIFKILSK 252 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 252 (886)
....|.|.|+.|.||||+++.+.+.. .......++.- .+..... .-...+..+-.. ..........++..++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp~E~~~~~~~~~i~q~ev--g~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDPIEYVHRNKRSLINQREV--GLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCChhhhccCccceEEcccc--CCCCcCHHHHHHHhhcc
Confidence 45789999999999999999988765 23334444432 2221110 000001111110 11223456667888889
Q ss_pred CcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhh
Q 035887 253 KKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENV 294 (886)
Q Consensus 253 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v 294 (886)
.+=.|++|.+.+.+.+...... ...|..|+.|+-....
T Consensus 195 ~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCH
Confidence 9999999999887766542221 2235556666554433
No 460
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.89 E-value=0.15 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.6
Q ss_pred EEEEcCCCchhHHHHHHHHHhh
Q 035887 178 IGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|.++|++|+||||+|+.+....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 461
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.87 E-value=0.3 Score=54.00 Aligned_cols=88 Identities=24% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------CCCH-----
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE--------NRSL----- 239 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~~----- 239 (886)
..-..++|+|..|+|||||++.++... + ....++...-.+.....+...+.+..-+... +.+.
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA-K---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-C---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 355789999999999999999998875 2 1223333333334566667666555533221 1111
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEccccc
Q 035887 240 -EEKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 240 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
...+..+.+++ ++++.|+++||+-.
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 11222344444 47899999999954
No 462
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.86 E-value=0.059 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.771 Sum_probs=21.5
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 463
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.86 E-value=0.77 Score=47.07 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=42.9
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHh----C--C--CCCCCHHHHHHHH
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD--MQLESVQEKIGERI----G--F--LENRSLEEKASGI 246 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l----~--~--~~~~~~~~~~~~l 246 (886)
+|+|.|..|+||||+|+.+.... ...+ ..+..++...- ++....-..+..+. + . +...+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998876 2111 22344443221 22222222222221 1 1 2255667777777
Q ss_pred HHHhccCc
Q 035887 247 FKILSKKK 254 (886)
Q Consensus 247 ~~~l~~k~ 254 (886)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77776653
No 464
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.86 E-value=0.12 Score=56.78 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.||||||+.+..-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 44689999999999999999987654
No 465
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.15 Score=50.39 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.-.+++|+|+.|.|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 466
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.85 E-value=0.03 Score=67.34 Aligned_cols=184 Identities=20% Similarity=0.226 Sum_probs=90.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhc--------c-----CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFL--------D-----APNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLE 240 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~--------~-----~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (886)
+.+++.|.|+.+.||||+.+.+.-... . .-..|+. ++..++...++..-+..... ...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~--------~m~ 396 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSG--------HMT 396 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHH--------HHH
Confidence 567899999999999999998865420 0 0122232 23344333222222111111 111
Q ss_pred HHHHHHHHHhccCcEEEEEccccc---hhhhhhccCC-CCCCCCCCcEEEEEcCChhhhhccCccceEEccCCC-hHHHH
Q 035887 241 EKASGIFKILSKKKFLLLLDDIWE---RVDLAKLGVP-FPAISKNASKIVFTTRLENVCGLMETQKKFKVECLG-DNEAW 315 (886)
Q Consensus 241 ~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~-~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~-~~e~~ 315 (886)
+....+. .+ ..+-|+++|.... ..+-..+... +......|+.+|+||...+++........+.-..+. +++..
T Consensus 397 ~~~~Il~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l 474 (782)
T PRK00409 397 NIVRILE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFDEETL 474 (782)
T ss_pred HHHHHHH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcC
Confidence 1122122 22 4778999999863 2222222111 110123478999999998876543322211111111 11111
Q ss_pred HHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 035887 316 ELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRR 376 (886)
Q Consensus 316 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 376 (886)
. +........ + -...|-.|++++ |+|-.+..-|.-+... .......+++.|..
T Consensus 475 ~-~~Ykl~~G~--~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 475 R-PTYRLLIGI--P---GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred c-EEEEEeeCC--C---CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 0 000110000 1 133477888887 7888887777766552 44466666666554
No 467
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.64 Score=49.17 Aligned_cols=31 Identities=35% Similarity=0.292 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE 207 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~ 207 (886)
..+-|.++|++|.|||-||+.+..+. ...|-
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fI 156 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFI 156 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCcc
Confidence 45678899999999999999999987 45664
No 468
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.83 E-value=0.073 Score=55.62 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD 217 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 217 (886)
.-+++.|+|.+|+|||++|.++.... ...+..++||+....
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC
Confidence 56899999999999999999998887 455889999988654
No 469
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.80 E-value=0.31 Score=48.20 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEcCCCchhHHHHHHHHHhh
Q 035887 178 IGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998875
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.79 E-value=0.049 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 471
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.78 E-value=0.19 Score=55.56 Aligned_cols=87 Identities=22% Similarity=0.278 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC--------C------C
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGERIGFLE--------N------R 237 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~------~ 237 (886)
..-..++|+|..|+|||||++.+.... . .+..+...+.. ..+..++..+.+..-+... . .
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-Q----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-C----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 456789999999999999999987754 1 22322232322 2233333333333322111 1 1
Q ss_pred CHHHHHHHHHHHh--ccCcEEEEEccccc
Q 035887 238 SLEEKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 238 ~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
...+....+.+++ +++.+|+++||+-.
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 1122233344443 47899999999853
No 472
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.78 E-value=0.41 Score=50.30 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
.-.++.|.|.+|+||||++.++..... ..+-..++|++... ...++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 346888999999999999999887761 22245788988755 345555555544
No 473
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.76 E-value=0.3 Score=50.71 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45699999999999999999988765
No 474
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.74 E-value=0.098 Score=55.55 Aligned_cols=49 Identities=29% Similarity=0.350 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (886)
.+++.+.|.|||||||+|-+..-.. ......++-|++....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l---A~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL---AESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH---HHcCCcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999866555 223355888887777777766654
No 475
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.73 E-value=0.068 Score=57.43 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=40.1
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.+||-++.+..|...+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999888888888778878899999999999999997754
No 476
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.73 E-value=0.19 Score=56.04 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC--eEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCCHH-
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE--VVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRSLE- 240 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~- 240 (886)
..-.-++|.|..|+|||||+.++.+.. ...+.+. .++++-+.+.. ...++.+++...=.... +...-
T Consensus 139 g~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~ 217 (458)
T TIGR01041 139 VRGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVE 217 (458)
T ss_pred ccCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence 355779999999999999999988875 3221121 55666665543 45566666554322111 11111
Q ss_pred -----HHHHHHHHHhc---cCcEEEEEccccc
Q 035887 241 -----EKASGIFKILS---KKKFLLLLDDIWE 264 (886)
Q Consensus 241 -----~~~~~l~~~l~---~k~~LlVlDdv~~ 264 (886)
-.+-.+.++++ ++++|+++||+-.
T Consensus 218 R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 218 RIVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12234666665 6889999999953
No 477
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.71 E-value=0.063 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 478
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.68 E-value=0.093 Score=55.56 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=41.3
Q ss_pred CccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.++.++++++.+.. .+-+|+.++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999874 356899999999999999999998877
No 479
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.67 E-value=0.057 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...|.|+|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 480
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.67 E-value=0.098 Score=53.26 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=61.7
Q ss_pred hhhHHhhhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 035887 11 CDALFNGCTNCTRRNAAYVSQLEDNLANLKTQLQKLIEAKDDVMTRVANAEQHQMRRLNKVQGWLSRVESVEAEVGELIR 90 (886)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~l~~~~~~~ed~ld 90 (886)
++.+++.|-.+..+....+...+.+++-++.+++.+|.||+.+ ++..+.+. +..+....++...||++|+++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeeee
Confidence 5777888888877777788889999999999999999999986 44433333 3388999999999999999998
Q ss_pred hh
Q 035887 91 HS 92 (886)
Q Consensus 91 ~~ 92 (886)
.+
T Consensus 371 aC 372 (402)
T PF12061_consen 371 AC 372 (402)
T ss_pred hh
Confidence 75
No 481
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.66 E-value=0.28 Score=51.68 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999998754
No 482
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.65 E-value=0.33 Score=51.61 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=40.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHH
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIG 228 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~ 228 (886)
+++.+.. .+-..++|.|..|+|||+|++++.+.. +-+.++++-+.+. ..+.+++.++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 3444332 355789999999999999999998865 2356788877665 34555665543
No 483
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.65 E-value=0.17 Score=55.87 Aligned_cols=87 Identities=24% Similarity=0.312 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC--------CCCHHH--
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE--------NRSLEE-- 241 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--------~~~~~~-- 241 (886)
..-..++|+|..|+|||||++.+.+.. . .+..+...+... ....++..+....=.... +.....
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~-~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~ 209 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYT-E----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRL 209 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCC-C----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHH
Confidence 355689999999999999999888754 1 234444555443 334444444433311111 111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEccccc
Q 035887 242 ----KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 242 ----~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
.+-.+.+++ +++.+|+++||+-.
T Consensus 210 ~a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 210 RAAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 122344554 57899999999853
No 484
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.64 E-value=0.13 Score=51.92 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=37.8
Q ss_pred hHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 035887 162 TFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (886)
...++++.+.. ++..+|+|.|++|+||+||.-.+.... ..+++--.++-|.-|..++=..++.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCccccc
Confidence 34455555543 467899999999999999999999888 33333334555555555655555444
No 485
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.63 E-value=0.054 Score=50.18 Aligned_cols=23 Identities=48% Similarity=0.785 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 486
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.62 E-value=3.7 Score=45.86 Aligned_cols=232 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 035887 8 QISCDALFNGCTNCTRRNAAYVSQLEDNLANLKTQLQKLIEAKDDVMTRVANAEQHQMRRLNKVQGWLSRVESVEAEVGE 87 (886)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~~~Wl~~l~~~~~~~ed 87 (886)
+..+..+-..++.+-.+...+..|-.+.....+.|++. .+++.|.++=++++ -..|
T Consensus 279 QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~-----------------------~q~K~~~kqqk~i~-~~K~ 334 (614)
T KOG0927|consen 279 QDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEE-----------------------NQMKAYEKQQKQIA-HMKD 334 (614)
T ss_pred hhhhhhHhhhhheecccceeeecCCHHHHhhHHHHHhH-----------------------HHHHHHHHHHhHHH-HhhH
Q ss_pred HHHhhHHhhhcccccCcccCCcccccchHHHHHHHHHHHHHHHhcCCccccccc------------CCCCCcccCCCCCc
Q 035887 88 LIRHSTQEIDKLCLGGYCSKNCQSSYNFGKKVSKKLQLMDTLMGEGAFDVVAEK------------VPQPAVDERPLEPT 155 (886)
Q Consensus 88 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 155 (886)
++-.+-+... ..+++...+.+.+.....++-......+ .|+|...- .+.
T Consensus 335 ~ia~~g~g~a----------------~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~---~nv 395 (614)
T KOG0927|consen 335 LIARFGHGSA----------------KLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMV---QNV 395 (614)
T ss_pred HHHhhcccch----------------hhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEE---ecc
Q ss_pred cccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeC------------------
Q 035887 156 IVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVS------------------ 215 (886)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s------------------ 215 (886)
-+|-++.- .|..-|.- +--+.|++||+.|+|||||.+.++.+.....+.-.........
T Consensus 396 ~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le 474 (614)
T KOG0927|consen 396 SFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLE 474 (614)
T ss_pred ccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHH
Q ss_pred ------CCCCHHHHHHHHHHHhCCCC---------CCCHHHHHHHHHHHhccCcEEEEEc------cccchhhhhhccCC
Q 035887 216 ------KDMQLESVQEKIGERIGFLE---------NRSLEEKASGIFKILSKKKFLLLLD------DIWERVDLAKLGVP 274 (886)
Q Consensus 216 ------~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~l~~~l~~k~~LlVlD------dv~~~~~~~~l~~~ 274 (886)
.+-...+..+.|+...+... -.+.+...-......=..+-+|||| |+...+.+.+...-
T Consensus 475 ~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 475 FMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred HHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc
Q ss_pred CCCCCCCCcEEEEE
Q 035887 275 FPAISKNASKIVFT 288 (886)
Q Consensus 275 ~~~~~~~gs~iiiT 288 (886)
++ |..|+|+
T Consensus 555 ~~-----Ggvv~vS 563 (614)
T KOG0927|consen 555 FP-----GGVVLVS 563 (614)
T ss_pred cC-----Cceeeee
No 487
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.62 E-value=0.077 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 488
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.61 E-value=0.088 Score=56.61 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+||.+..+..++-.+.+....-+.|.|..|+||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999888777777666778899999999999999997654
No 489
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.59 E-value=0.045 Score=30.10 Aligned_cols=16 Identities=38% Similarity=0.683 Sum_probs=5.9
Q ss_pred CCCEEeccCCCccccc
Q 035887 581 SLQYLNLSETSIKELP 596 (886)
Q Consensus 581 ~L~~L~L~~~~i~~LP 596 (886)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555444443
No 490
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.57 E-value=0.37 Score=54.37 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCchhHHH-HHHHHHhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCC----
Q 035887 163 FDKVWRCLIQEQVGIIGLHGMGGVGKTTL-LTQINNKFLDAPNNFEVVIWVVVSKDM--QLESVQEKIGERIGFLE---- 235 (886)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtL-a~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~---- 235 (886)
.++|++.+.+ -.||.|+|..|.||||- ||-+|.+- +-+.. -|-+.|.- ....+.+.+.+.++...
T Consensus 361 R~~ll~~ir~--n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 361 RDQLLSVIRE--NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHHHhh--CcEEEEEecCCCCchhhhHHHHHhcc-----cccCC-eeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 3455555543 47999999999999985 45555543 11211 33444443 34456667777775332
Q ss_pred ------------------CCCHHHHHHHHHHHhccCcEEEEEccccchh----hhh-hccCCCCCCCCCCcEEEEEcCCh
Q 035887 236 ------------------NRSLEEKASGIFKILSKKKFLLLLDDIWERV----DLA-KLGVPFPAISKNASKIVFTTRLE 292 (886)
Q Consensus 236 ------------------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~-~l~~~~~~~~~~gs~iiiTtR~~ 292 (886)
..+.--+.+.|....-.|--.||+|.+.+.. .+- -++..+ .....-|+|||+-.-
T Consensus 433 GYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l--arRrdlKliVtSATm 510 (1042)
T KOG0924|consen 433 GYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL--ARRRDLKLIVTSATM 510 (1042)
T ss_pred ceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH--HhhccceEEEeeccc
Confidence 1111122233333333455688999997542 111 122222 234467999998865
Q ss_pred hh---hhccCccceEEc
Q 035887 293 NV---CGLMETQKKFKV 306 (886)
Q Consensus 293 ~v---~~~~~~~~~~~l 306 (886)
+. +..++....+.+
T Consensus 511 ~a~kf~nfFgn~p~f~I 527 (1042)
T KOG0924|consen 511 DAQKFSNFFGNCPQFTI 527 (1042)
T ss_pred cHHHHHHHhCCCceeee
Confidence 43 444553333333
No 491
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.56 E-value=0.073 Score=53.41 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=27.1
Q ss_pred HHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 169 CLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 169 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+...++++|+++|..|+|||||..++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998875
No 492
>PRK14531 adenylate kinase; Provisional
Probab=93.54 E-value=0.18 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..|.|.|++|+||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 493
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.54 E-value=0.051 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.2
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|.|.|+.|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 494
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.54 E-value=0.14 Score=56.25 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=31.3
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 162 TFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+.+++.+...+...+.|.|+||.|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34555666666677889999999999999999999987
No 495
>PF13245 AAA_19: Part of AAA domain
Probab=93.53 E-value=0.16 Score=41.35 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45778899999999995555544443
No 496
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.51 E-value=0.059 Score=48.49 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEcCCCchhHHHHHHHHHhh
Q 035887 178 IGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 497
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.50 E-value=0.051 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 498
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.49 E-value=0.43 Score=50.96 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||.+.+....
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 499
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.086 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45789999999999999999988754
No 500
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.47 E-value=0.071 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
Done!