Query 035887
Match_columns 886
No_of_seqs 474 out of 4080
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.5E-49 1.9E-53 455.8 20.1 306 157-485 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.1E-39 3.7E-44 379.4 19.7 280 155-478 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-37 9.7E-42 397.1 28.0 306 153-485 123-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-34 3.8E-39 341.6 27.3 300 153-482 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 2.6E-23 8.9E-28 227.7 21.1 303 506-861 40-343 (347)
6 1o6v_A Internalin A; bacterial 99.9 1.5E-22 5E-27 230.8 21.9 309 509-861 45-385 (466)
7 3vq2_A TLR4, TOLL-like recepto 99.9 3.5E-22 1.2E-26 236.1 21.6 145 495-642 18-167 (606)
8 1o6v_A Internalin A; bacterial 99.9 8.2E-22 2.8E-26 224.7 23.8 305 500-847 58-393 (466)
9 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7E-27 220.5 17.8 281 528-862 40-322 (347)
10 3o6n_A APL1; leucine-rich repe 99.9 6.3E-22 2.1E-26 220.3 20.8 302 508-861 43-349 (390)
11 2id5_A Lingo-1, leucine rich r 99.9 1E-21 3.4E-26 225.0 23.0 277 532-846 32-313 (477)
12 3v47_A TOLL-like receptor 5B a 99.9 9.9E-22 3.4E-26 223.7 20.8 344 496-861 18-405 (455)
13 4ecn_A Leucine-rich repeat pro 99.9 7.2E-22 2.5E-26 237.3 20.4 327 504-862 442-838 (876)
14 4eco_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 234.9 16.7 326 505-861 201-597 (636)
15 2z81_A CD282 antigen, TOLL-lik 99.9 3.5E-21 1.2E-25 224.7 23.8 133 510-643 26-163 (549)
16 3oja_B Anopheles plasmodium-re 99.9 1.3E-21 4.6E-26 229.9 19.9 302 508-861 49-355 (597)
17 2id5_A Lingo-1, leucine rich r 99.9 4.5E-21 1.5E-25 219.5 23.7 294 509-839 31-331 (477)
18 3o6n_A APL1; leucine-rich repe 99.9 1.7E-21 5.7E-26 216.9 18.7 281 506-839 65-350 (390)
19 2z63_A TOLL-like receptor 4, v 99.9 9.3E-21 3.2E-25 222.3 25.2 130 510-641 28-162 (570)
20 2z7x_B TOLL-like receptor 1, v 99.9 7.9E-21 2.7E-25 220.1 24.2 124 510-640 21-150 (520)
21 4eco_A Uncharacterized protein 99.9 1.6E-21 5.5E-26 230.5 17.8 184 521-726 194-412 (636)
22 3vq2_A TLR4, TOLL-like recepto 99.9 5.2E-21 1.8E-25 226.1 20.4 122 505-628 51-177 (606)
23 4ecn_A Leucine-rich repeat pro 99.9 3.4E-21 1.2E-25 231.5 18.7 187 519-727 434-655 (876)
24 3oja_B Anopheles plasmodium-re 99.9 3.6E-21 1.2E-25 226.3 18.1 280 507-839 72-356 (597)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.9E-20 1.7E-24 215.4 26.7 124 510-640 52-181 (562)
26 2ft3_A Biglycan; proteoglycan, 99.9 6.4E-21 2.2E-25 207.1 17.2 293 511-839 34-331 (332)
27 3j0a_A TOLL-like receptor 5; m 99.8 3.7E-20 1.2E-24 226.5 25.6 321 491-845 7-378 (844)
28 3t6q_A CD180 antigen; protein- 99.8 2E-20 7E-25 221.0 22.7 130 510-641 33-166 (606)
29 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-20 7.1E-25 216.6 22.3 124 513-641 3-128 (520)
30 3rgz_A Protein brassinosteroid 99.8 3.6E-21 1.2E-25 232.9 15.7 132 507-641 197-331 (768)
31 3t6q_A CD180 antigen; protein- 99.8 1.1E-20 3.7E-25 223.4 19.3 261 576-861 274-557 (606)
32 1xku_A Decorin; proteoglycan, 99.8 3.3E-20 1.1E-24 201.3 21.2 293 511-838 32-329 (330)
33 3bz5_A Internalin-J, INLJ; leu 99.8 8.1E-21 2.8E-25 214.7 16.6 225 505-779 37-261 (457)
34 3j0a_A TOLL-like receptor 5; m 99.8 9.3E-20 3.2E-24 223.0 25.7 311 504-847 42-399 (844)
35 2z63_A TOLL-like receptor 4, v 99.8 1.2E-20 4.1E-25 221.4 16.7 344 506-861 48-528 (570)
36 2z81_A CD282 antigen, TOLL-lik 99.8 4E-20 1.4E-24 215.8 20.6 133 505-639 45-183 (549)
37 3v47_A TOLL-like receptor 5B a 99.8 3.3E-20 1.1E-24 211.1 18.9 310 505-845 49-412 (455)
38 4fcg_A Uncharacterized protein 99.8 2.8E-20 9.5E-25 201.1 16.6 106 531-639 80-194 (328)
39 3rgz_A Protein brassinosteroid 99.8 2.8E-20 9.5E-25 225.2 18.2 110 747-864 630-740 (768)
40 3bz5_A Internalin-J, INLJ; leu 99.8 7.1E-20 2.4E-24 207.0 18.5 299 497-838 51-349 (457)
41 4fcg_A Uncharacterized protein 99.8 5.9E-20 2E-24 198.5 16.4 89 554-645 79-167 (328)
42 1ziw_A TOLL-like receptor 3; i 99.8 2.6E-19 8.9E-24 214.5 22.9 146 494-642 10-159 (680)
43 1ziw_A TOLL-like receptor 3; i 99.8 3.9E-19 1.4E-23 213.0 22.5 275 514-813 8-305 (680)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.6E-18 5.6E-23 202.4 26.3 332 511-861 32-507 (562)
45 1ogq_A PGIP-2, polygalacturona 99.8 1E-19 3.5E-24 195.5 13.1 253 532-845 50-308 (313)
46 1xku_A Decorin; proteoglycan, 99.8 4.7E-18 1.6E-22 184.3 22.9 263 533-839 32-304 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-18 5.4E-23 188.2 18.8 284 533-861 34-330 (332)
48 4g8a_A TOLL-like receptor 4; l 99.8 3.4E-18 1.2E-22 203.2 21.5 130 510-642 52-187 (635)
49 1ogq_A PGIP-2, polygalacturona 99.8 7.7E-19 2.6E-23 188.6 12.8 249 510-820 50-307 (313)
50 2z66_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 183.4 16.5 243 514-815 11-259 (306)
51 2z80_A TOLL-like receptor 2, v 99.8 3.9E-18 1.3E-22 186.7 16.1 269 515-815 36-312 (353)
52 3zyj_A Leucine-rich repeat-con 99.8 5.8E-18 2E-22 191.2 17.5 239 514-782 47-289 (440)
53 3zyi_A Leucine-rich repeat-con 99.8 5.8E-18 2E-22 192.0 17.5 126 514-642 58-185 (452)
54 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-17 4.5E-22 194.0 20.5 255 511-839 41-295 (622)
55 2z80_A TOLL-like receptor 2, v 99.8 6.4E-18 2.2E-22 185.0 17.0 272 529-839 28-312 (353)
56 1jl5_A Outer protein YOPM; leu 99.8 2.2E-17 7.5E-22 186.4 21.4 271 510-843 91-371 (454)
57 1jl5_A Outer protein YOPM; leu 99.7 1.4E-17 4.7E-22 188.1 18.6 279 510-847 111-417 (454)
58 3zyj_A Leucine-rich repeat-con 99.7 7.4E-17 2.5E-21 182.2 20.5 223 510-760 64-290 (440)
59 3g06_A SSPH2 (leucine-rich rep 99.7 5.3E-17 1.8E-21 188.8 19.8 254 532-861 40-294 (622)
60 3zyi_A Leucine-rich repeat-con 99.7 6E-17 2.1E-21 183.6 18.7 221 510-783 75-301 (452)
61 3o53_A Protein LRIM1, AGAP0063 99.7 6.2E-18 2.1E-22 182.0 9.4 245 530-844 32-278 (317)
62 3o53_A Protein LRIM1, AGAP0063 99.7 4E-18 1.4E-22 183.5 7.9 263 532-864 10-275 (317)
63 4g8a_A TOLL-like receptor 4; l 99.7 1.6E-16 5.3E-21 188.9 21.3 342 505-860 71-576 (635)
64 2z66_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 170.1 17.3 224 510-783 28-259 (306)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-16 5.1E-21 168.5 15.7 217 514-783 15-236 (285)
66 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.4E-21 181.9 16.2 243 529-841 31-275 (487)
67 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-15 3.7E-20 161.9 18.0 220 535-815 14-236 (285)
68 1wwl_A Monocyte differentiatio 99.7 5.5E-17 1.9E-21 174.1 6.4 245 509-813 42-305 (312)
69 2xwt_C Thyrotropin receptor; s 99.6 7.7E-16 2.6E-20 158.3 14.1 82 557-639 32-116 (239)
70 1h6u_A Internalin H; cell adhe 99.6 7.7E-16 2.6E-20 164.6 13.3 208 512-783 21-228 (308)
71 3oja_A Leucine-rich immune mol 99.6 2.2E-16 7.6E-21 180.0 8.8 239 509-817 33-275 (487)
72 2qen_A Walker-type ATPase; unk 99.6 1.6E-14 5.4E-19 157.9 23.0 287 153-479 11-349 (350)
73 3ogk_B Coronatine-insensitive 99.6 1.3E-16 4.4E-21 187.9 5.3 309 509-843 163-527 (592)
74 1p9a_G Platelet glycoprotein I 99.6 3.7E-15 1.3E-19 157.7 16.0 128 509-640 9-136 (290)
75 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.6E-20 154.9 13.7 113 521-638 22-140 (239)
76 1w5s_A Origin recognition comp 99.6 5.8E-15 2E-19 165.3 17.8 304 154-474 22-387 (412)
77 3rfs_A Internalin B, repeat mo 99.6 2.1E-15 7.1E-20 158.3 12.7 125 511-640 20-145 (272)
78 2o6q_A Variable lymphocyte rec 99.6 9.2E-15 3.2E-19 153.2 17.5 101 534-639 18-120 (270)
79 3ogk_B Coronatine-insensitive 99.6 3.5E-16 1.2E-20 184.1 6.6 314 508-838 190-548 (592)
80 4ay9_X Follicle-stimulating ho 99.6 5.6E-15 1.9E-19 161.2 15.6 238 535-837 12-255 (350)
81 2o6q_A Variable lymphocyte rec 99.6 9.7E-15 3.3E-19 153.1 16.7 127 511-640 17-145 (270)
82 2fna_A Conserved hypothetical 99.6 3E-14 1E-18 156.0 21.3 285 154-477 13-355 (357)
83 2ast_B S-phase kinase-associat 99.6 1.4E-15 4.7E-20 165.3 8.8 250 533-844 48-308 (336)
84 2z62_A TOLL-like receptor 4, v 99.6 1.2E-14 4E-19 153.1 15.3 200 532-783 28-235 (276)
85 1h6u_A Internalin H; cell adhe 99.6 8E-15 2.7E-19 156.7 13.6 192 506-760 37-228 (308)
86 1wwl_A Monocyte differentiatio 99.6 7.8E-16 2.7E-20 165.1 4.8 248 530-839 41-307 (312)
87 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.6E-19 159.0 13.6 241 513-782 12-256 (350)
88 2z62_A TOLL-like receptor 4, v 99.6 1.6E-14 5.5E-19 152.0 14.4 203 510-761 28-236 (276)
89 1p9a_G Platelet glycoprotein I 99.6 3.6E-14 1.2E-18 150.1 17.0 198 529-783 7-206 (290)
90 1z7x_W Ribonuclease inhibitor; 99.6 4.7E-16 1.6E-20 177.0 2.0 311 510-839 56-409 (461)
91 3rfs_A Internalin B, repeat mo 99.6 7.5E-15 2.6E-19 154.1 10.7 132 506-641 37-170 (272)
92 2p1m_B Transport inhibitor res 99.5 1.3E-15 4.6E-20 179.2 3.1 86 747-840 430-518 (594)
93 1h6t_A Internalin B; cell adhe 99.5 4.2E-14 1.4E-18 149.7 13.0 120 512-639 26-145 (291)
94 2ast_B S-phase kinase-associat 99.5 1E-14 3.5E-19 158.3 7.6 104 532-638 70-178 (336)
95 1z7x_W Ribonuclease inhibitor; 99.5 2.9E-15 9.8E-20 170.5 3.2 257 510-782 3-294 (461)
96 1m9s_A Internalin B; cell inva 99.5 4.7E-14 1.6E-18 163.9 12.5 122 511-640 22-143 (605)
97 2ca6_A RAN GTPase-activating p 99.5 1.2E-14 4E-19 161.1 4.0 84 530-614 30-133 (386)
98 2ca6_A RAN GTPase-activating p 99.5 3.4E-14 1.2E-18 157.4 7.2 234 552-815 28-314 (386)
99 1h6t_A Internalin B; cell adhe 99.5 2.1E-13 7.3E-18 144.2 12.4 169 506-701 42-210 (291)
100 3qfl_A MLA10; coiled-coil, (CC 99.4 1.9E-13 6.6E-18 120.4 8.5 82 9-97 1-83 (115)
101 1m9s_A Internalin B; cell inva 99.4 2.8E-13 9.6E-18 157.4 12.0 170 506-702 39-208 (605)
102 3goz_A Leucine-rich repeat-con 99.4 2E-13 6.9E-18 149.6 10.2 116 692-815 168-295 (362)
103 4ezg_A Putative uncharacterize 99.4 2.7E-13 9.2E-18 134.6 9.9 150 507-676 41-192 (197)
104 3m19_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 137.1 12.8 128 511-641 15-144 (251)
105 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4.3E-17 133.1 12.9 129 510-640 40-171 (229)
106 4glp_A Monocyte differentiatio 99.4 8.3E-13 2.8E-17 141.3 11.4 108 533-641 65-182 (310)
107 2p1m_B Transport inhibitor res 99.4 9.5E-14 3.2E-18 163.4 4.1 129 508-639 154-300 (594)
108 2qby_B CDC6 homolog 3, cell di 99.4 2.2E-11 7.5E-16 134.6 22.6 285 154-464 20-339 (384)
109 3m19_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 132.3 13.9 153 510-677 35-191 (251)
110 2v1u_A Cell division control p 99.4 1.4E-11 4.8E-16 136.3 19.8 288 154-464 19-351 (387)
111 1xeu_A Internalin C; cellular 99.4 7.7E-13 2.6E-17 137.6 8.3 123 509-640 18-140 (263)
112 2o6s_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 129.3 11.2 123 515-640 12-136 (208)
113 2v9t_B SLIT homolog 2 protein 99.4 3.5E-12 1.2E-16 128.8 12.7 148 514-677 15-164 (220)
114 1xeu_A Internalin C; cellular 99.3 2.8E-12 9.5E-17 133.4 11.7 149 505-677 36-184 (263)
115 2v9t_B SLIT homolog 2 protein 99.3 2.2E-12 7.5E-17 130.3 10.6 130 510-641 32-165 (220)
116 1fnn_A CDC6P, cell division co 99.3 7.4E-11 2.5E-15 130.6 23.4 286 154-463 17-350 (389)
117 2o6s_A Variable lymphocyte rec 99.3 4.2E-12 1.4E-16 127.2 11.6 131 509-641 27-161 (208)
118 4glp_A Monocyte differentiatio 99.3 1.3E-12 4.4E-17 139.8 8.2 56 691-761 251-306 (310)
119 4ezg_A Putative uncharacterize 99.3 3.8E-12 1.3E-16 126.2 10.6 142 494-640 50-193 (197)
120 2qby_A CDC6 homolog 1, cell di 99.3 2E-11 6.9E-16 135.0 16.9 289 154-463 20-347 (386)
121 2v70_A SLIT-2, SLIT homolog 2 99.3 4.5E-12 1.5E-16 128.0 10.3 149 513-677 14-165 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 5.2E-12 1.8E-16 127.6 10.7 130 510-641 32-166 (220)
123 3cvr_A Invasion plasmid antige 99.3 1.8E-11 6.1E-16 140.6 16.0 92 533-639 60-151 (571)
124 2je0_A Acidic leucine-rich nuc 99.3 2.6E-12 8.8E-17 121.1 7.4 121 511-635 18-147 (149)
125 2ell_A Acidic leucine-rich nuc 99.3 2.5E-12 8.7E-17 123.9 7.4 125 511-639 25-158 (168)
126 3e6j_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 127.3 10.7 148 512-676 21-170 (229)
127 2xot_A Amphoterin-induced prot 99.3 5.2E-12 1.8E-16 138.1 9.6 127 511-639 40-174 (361)
128 1a9n_A U2A', U2A'; complex (nu 99.3 2.7E-12 9.1E-17 124.8 6.2 135 529-677 16-152 (176)
129 3goz_A Leucine-rich repeat-con 99.3 2.2E-12 7.6E-17 141.3 6.2 236 531-783 21-295 (362)
130 3cvr_A Invasion plasmid antige 99.3 1.4E-11 4.8E-16 141.4 12.5 114 511-641 60-173 (571)
131 2ell_A Acidic leucine-rich nuc 99.2 2E-11 6.8E-16 117.6 10.0 133 530-676 22-158 (168)
132 2xot_A Amphoterin-induced prot 99.2 2.3E-11 8E-16 133.0 11.8 176 512-702 20-200 (361)
133 2o6r_A Variable lymphocyte rec 99.2 3E-11 1E-15 117.5 10.9 128 512-642 9-138 (177)
134 2wfh_A SLIT homolog 2 protein 99.2 4.4E-11 1.5E-15 117.9 11.2 125 513-641 13-139 (193)
135 1w8a_A SLIT protein; signaling 99.2 3E-11 1E-15 119.1 10.0 127 513-642 11-140 (192)
136 2je0_A Acidic leucine-rich nuc 99.2 2.1E-11 7.2E-16 114.8 8.4 109 530-642 15-127 (149)
137 1dce_A Protein (RAB geranylger 99.2 1.2E-11 4.2E-16 142.7 7.9 122 511-642 424-547 (567)
138 1a9n_A U2A', U2A'; complex (nu 99.2 4.8E-11 1.6E-15 115.9 10.8 130 507-640 16-152 (176)
139 1njg_A DNA polymerase III subu 99.2 2.3E-10 7.7E-15 117.6 16.4 179 154-357 23-230 (250)
140 4b8c_D Glucose-repressible alc 99.2 3.3E-11 1.1E-15 143.7 9.2 113 529-645 221-333 (727)
141 2chg_A Replication factor C sm 99.1 4.2E-10 1.4E-14 113.8 15.1 183 154-354 17-203 (226)
142 1dce_A Protein (RAB geranylger 99.1 1.3E-10 4.6E-15 134.0 9.0 121 511-635 442-567 (567)
143 4b8c_D Glucose-repressible alc 99.1 1.4E-10 4.8E-15 138.3 9.1 151 510-678 173-329 (727)
144 2wfh_A SLIT homolog 2 protein 99.1 3.6E-10 1.2E-14 111.3 10.4 124 535-676 13-137 (193)
145 1w8a_A SLIT protein; signaling 99.1 3.2E-10 1.1E-14 111.7 9.8 125 534-676 10-137 (192)
146 2r9u_A Variable lymphocyte rec 99.0 7.1E-10 2.4E-14 107.1 9.9 102 535-641 15-118 (174)
147 3g39_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 106.5 9.7 104 533-641 10-115 (170)
148 1hqc_A RUVB; extended AAA-ATPa 99.0 6.1E-09 2.1E-13 111.9 17.5 273 154-463 12-324 (324)
149 1sxj_B Activator 1 37 kDa subu 99.0 3.2E-09 1.1E-13 114.1 13.3 185 154-356 21-211 (323)
150 1ds9_A Outer arm dynein; leuci 99.0 4.7E-11 1.6E-15 118.4 -1.1 107 530-641 46-153 (198)
151 2r9u_A Variable lymphocyte rec 98.9 1.2E-09 4E-14 105.5 8.4 106 513-621 15-122 (174)
152 2o6r_A Variable lymphocyte rec 98.9 2.3E-09 7.7E-14 104.0 10.0 108 509-617 27-138 (177)
153 3g39_A Variable lymphocyte rec 98.9 1.6E-09 5.6E-14 104.1 8.5 103 511-615 10-114 (170)
154 1ds9_A Outer arm dynein; leuci 98.9 7.3E-11 2.5E-15 117.0 -1.1 127 533-677 24-152 (198)
155 3sb4_A Hypothetical leucine ri 98.9 5.1E-09 1.8E-13 112.7 12.0 220 579-834 100-327 (329)
156 3sb4_A Hypothetical leucine ri 98.9 1.2E-08 4.2E-13 109.8 13.1 228 546-811 83-328 (329)
157 1iqp_A RFCS; clamp loader, ext 98.8 1.8E-08 6.3E-13 108.3 11.8 182 154-357 25-214 (327)
158 3te6_A Regulatory protein SIR3 98.8 3.3E-08 1.1E-12 103.6 12.1 167 155-323 21-212 (318)
159 4fdw_A Leucine rich hypothetic 98.7 7.9E-07 2.7E-11 97.8 20.4 218 533-820 136-360 (401)
160 2ifg_A High affinity nerve gro 98.7 5.9E-08 2E-12 105.3 10.4 101 536-641 12-116 (347)
161 2chq_A Replication factor C sm 98.6 2.9E-07 9.9E-12 98.4 14.6 179 154-354 17-203 (319)
162 1jr3_A DNA polymerase III subu 98.6 4.3E-07 1.5E-11 99.5 16.0 181 154-355 16-221 (373)
163 4fdw_A Leucine rich hypothetic 98.6 1.5E-06 5.1E-11 95.6 20.0 242 531-846 112-362 (401)
164 2ifg_A High affinity nerve gro 98.5 1.1E-07 3.7E-12 103.2 8.2 99 515-614 13-114 (347)
165 3bos_A Putative DNA replicatio 98.5 1.8E-07 6.3E-12 95.4 7.6 171 155-354 29-216 (242)
166 1jbk_A CLPB protein; beta barr 98.5 1E-07 3.5E-12 93.5 5.2 147 154-318 22-194 (195)
167 1sxj_D Activator 1 41 kDa subu 98.4 1.6E-06 5.4E-11 94.2 12.6 192 154-354 37-234 (353)
168 2z4s_A Chromosomal replication 98.3 1.9E-06 6.6E-11 95.8 12.4 179 157-352 109-303 (440)
169 4fs7_A Uncharacterized protein 98.3 7.2E-06 2.5E-10 90.4 16.9 103 529-636 68-193 (394)
170 1sxj_A Activator 1 95 kDa subu 98.3 2.6E-06 8.9E-11 97.1 12.9 187 154-355 39-253 (516)
171 3pvs_A Replication-associated 98.3 1E-05 3.6E-10 89.7 16.9 173 154-352 26-212 (447)
172 3h4m_A Proteasome-activating n 98.3 3.8E-06 1.3E-10 88.0 12.7 175 154-352 17-228 (285)
173 1d2n_A N-ethylmaleimide-sensit 98.3 2.4E-05 8.2E-10 81.2 18.4 197 154-377 33-264 (272)
174 3un9_A NLR family member X1; l 98.2 2.7E-07 9.4E-12 100.4 2.2 14 580-593 126-139 (372)
175 3syl_A Protein CBBX; photosynt 98.2 6.3E-06 2.2E-10 87.5 11.8 152 155-323 32-218 (309)
176 1sxj_E Activator 1 40 kDa subu 98.2 2.7E-06 9.2E-11 92.3 9.0 195 154-355 14-237 (354)
177 3pfi_A Holliday junction ATP-d 98.2 0.0001 3.5E-09 79.1 21.2 171 154-354 29-226 (338)
178 3u61_B DNA polymerase accessor 98.2 1.5E-05 5.1E-10 85.2 14.2 170 154-352 26-213 (324)
179 3uk6_A RUVB-like 2; hexameric 98.2 1.4E-05 4.7E-10 87.2 13.9 191 154-353 44-301 (368)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.9E-05 6.6E-10 81.4 14.1 180 154-354 6-221 (262)
181 3e4g_A ATP synthase subunit S, 98.1 8.8E-07 3E-11 83.8 3.4 86 750-843 62-154 (176)
182 3un9_A NLR family member X1; l 98.1 2.3E-07 7.9E-12 101.1 -0.9 35 580-614 155-194 (372)
183 1sxj_C Activator 1 40 kDa subu 98.1 2.1E-05 7E-10 84.7 14.6 172 155-351 26-208 (340)
184 3d8b_A Fidgetin-like protein 1 98.1 0.00011 3.6E-09 79.5 19.3 180 154-356 84-296 (357)
185 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00022 7.5E-09 75.7 21.2 182 154-356 12-224 (322)
186 3eie_A Vacuolar protein sortin 98.1 8.8E-05 3E-09 78.9 17.4 179 154-355 18-228 (322)
187 3cf0_A Transitional endoplasmi 98.1 0.00012 4E-09 77.1 18.0 174 154-350 15-223 (301)
188 1a5t_A Delta prime, HOLB; zinc 98.0 7.3E-05 2.5E-09 80.0 16.3 170 160-354 8-204 (334)
189 1l8q_A Chromosomal replication 98.0 2.2E-05 7.4E-10 83.9 12.2 167 163-351 23-204 (324)
190 2qp9_X Vacuolar protein sortin 98.0 0.00013 4.4E-09 78.7 17.5 178 154-355 51-261 (355)
191 2p65_A Hypothetical protein PF 98.0 5.4E-06 1.8E-10 80.5 6.0 46 154-199 22-67 (187)
192 3b9p_A CG5977-PA, isoform A; A 98.0 0.00023 7.8E-09 74.8 19.0 177 154-355 21-233 (297)
193 2ra8_A Uncharacterized protein 98.0 1.6E-05 5.3E-10 85.8 9.1 89 550-641 166-265 (362)
194 3e4g_A ATP synthase subunit S, 97.9 5.1E-06 1.7E-10 78.6 4.5 88 717-820 62-155 (176)
195 3vfd_A Spastin; ATPase, microt 97.9 0.0003 1E-08 77.0 19.4 180 154-355 115-326 (389)
196 2zan_A Vacuolar protein sortin 97.9 0.00036 1.2E-08 77.6 18.9 181 154-355 134-345 (444)
197 4gt6_A Cell surface protein; l 97.8 0.00048 1.7E-08 75.6 19.0 100 533-636 65-168 (394)
198 3rw6_A Nuclear RNA export fact 97.8 8.7E-06 3E-10 83.1 3.0 106 529-636 138-259 (267)
199 3pxg_A Negative regulator of g 97.8 0.00015 5.1E-09 81.3 13.3 149 154-323 180-339 (468)
200 4b4t_J 26S protease regulatory 97.8 0.00075 2.6E-08 72.4 17.9 173 154-350 148-356 (405)
201 1qvr_A CLPB protein; coiled co 97.7 8.9E-05 3.1E-09 89.9 11.1 154 154-322 170-345 (854)
202 3n70_A Transport activator; si 97.7 6E-05 2.1E-09 69.7 7.4 45 155-199 2-48 (145)
203 2gno_A DNA polymerase III, gam 97.7 0.00021 7.2E-09 74.8 12.4 147 158-322 1-152 (305)
204 1lv7_A FTSH; alpha/beta domain 97.7 0.0011 3.6E-08 68.0 17.2 176 154-352 12-222 (257)
205 3ec2_A DNA replication protein 97.6 2.7E-05 9.2E-10 75.2 4.3 118 159-292 19-143 (180)
206 4b4t_L 26S protease subunit RP 97.6 0.00099 3.4E-08 72.7 16.9 172 154-349 181-388 (437)
207 4fs7_A Uncharacterized protein 97.6 0.00055 1.9E-08 75.1 15.1 85 546-636 152-238 (394)
208 3hu3_A Transitional endoplasmi 97.6 0.00054 1.8E-08 76.7 14.9 176 154-352 204-412 (489)
209 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00047 1.6E-08 82.6 14.9 154 154-322 186-362 (758)
210 2kjq_A DNAA-related protein; s 97.6 2.7E-05 9.2E-10 72.3 2.8 57 154-216 18-74 (149)
211 4b4t_H 26S protease regulatory 97.6 0.00074 2.5E-08 73.4 14.3 170 155-348 210-415 (467)
212 4b4t_M 26S protease regulatory 97.5 0.00044 1.5E-08 75.4 12.2 171 154-348 181-387 (434)
213 4b4t_I 26S protease regulatory 97.5 0.00075 2.6E-08 72.6 13.8 171 154-348 182-388 (437)
214 1in4_A RUVB, holliday junction 97.5 0.0021 7.2E-08 68.5 17.3 170 155-354 26-222 (334)
215 4gt6_A Cell surface protein; l 97.5 0.0019 6.6E-08 70.7 17.4 119 512-637 66-191 (394)
216 1io0_A Tropomodulin; LRR prote 97.5 8.3E-05 2.9E-09 72.0 5.4 109 529-639 33-162 (185)
217 2ra8_A Uncharacterized protein 97.5 6.6E-05 2.3E-09 80.9 4.9 39 601-639 250-290 (362)
218 4b4t_K 26S protease regulatory 97.5 0.0023 7.7E-08 69.8 17.0 171 154-348 172-379 (428)
219 3rw6_A Nuclear RNA export fact 97.5 0.00016 5.4E-09 73.8 7.0 79 530-610 168-258 (267)
220 3pxi_A Negative regulator of g 97.4 0.00085 2.9E-08 80.3 14.5 151 154-323 180-339 (758)
221 3co5_A Putative two-component 97.4 6.8E-05 2.3E-09 69.2 3.5 45 155-199 5-51 (143)
222 2r62_A Cell division protease 97.4 0.00014 4.8E-09 75.2 6.3 152 154-324 11-198 (268)
223 4h09_A Hypothetical leucine ri 97.4 0.0084 2.9E-07 65.2 20.4 120 510-637 46-167 (379)
224 2w58_A DNAI, primosome compone 97.4 0.00036 1.2E-08 68.5 8.4 113 162-291 37-158 (202)
225 4fcw_A Chaperone protein CLPB; 97.4 0.00037 1.2E-08 73.8 8.9 59 155-216 18-85 (311)
226 1ofh_A ATP-dependent HSL prote 97.3 0.0012 4E-08 69.8 12.6 46 154-199 15-74 (310)
227 2bjv_A PSP operon transcriptio 97.3 0.00074 2.5E-08 69.5 10.7 59 155-216 7-67 (265)
228 2ce7_A Cell division protein F 97.3 0.0036 1.2E-07 69.4 16.4 172 154-348 16-221 (476)
229 1io0_A Tropomodulin; LRR prote 97.3 0.00017 5.8E-09 69.8 5.0 118 550-678 30-164 (185)
230 2c9o_A RUVB-like 1; hexameric 97.3 0.0016 5.6E-08 72.7 13.6 46 154-199 37-87 (456)
231 3cf2_A TER ATPase, transitiona 97.1 0.0038 1.3E-07 73.5 14.1 173 155-350 205-409 (806)
232 3pxi_A Negative regulator of g 97.0 0.00073 2.5E-08 80.9 7.7 148 154-322 491-675 (758)
233 1ojl_A Transcriptional regulat 97.0 0.0012 4E-08 69.4 8.3 46 154-199 2-49 (304)
234 4h09_A Hypothetical leucine ri 97.0 0.042 1.4E-06 59.5 20.8 100 529-636 43-143 (379)
235 1ypw_A Transitional endoplasmi 96.9 0.0069 2.3E-07 72.4 14.1 171 154-348 204-407 (806)
236 1iy2_A ATP-dependent metallopr 96.8 0.027 9.1E-07 58.1 16.6 170 154-348 40-245 (278)
237 2x8a_A Nuclear valosin-contain 96.8 0.033 1.1E-06 57.2 16.6 150 154-323 10-192 (274)
238 1ixz_A ATP-dependent metallopr 96.8 0.037 1.3E-06 56.1 16.9 171 154-348 16-221 (254)
239 3m6a_A ATP-dependent protease 96.7 0.008 2.7E-07 68.4 12.0 46 154-199 81-132 (543)
240 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0011 3.6E-08 68.7 4.2 69 175-264 123-193 (331)
241 3hr8_A Protein RECA; alpha and 96.6 0.005 1.7E-07 65.5 9.1 83 174-264 60-150 (356)
242 2dhr_A FTSH; AAA+ protein, hex 96.6 0.024 8.2E-07 63.2 14.7 168 154-348 31-236 (499)
243 2cvh_A DNA repair and recombin 96.4 0.0062 2.1E-07 60.4 7.9 83 174-263 19-115 (220)
244 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0073 2.5E-07 72.3 9.4 46 154-199 458-512 (758)
245 3io5_A Recombination and repai 96.3 0.014 4.7E-07 60.2 9.5 82 176-263 29-121 (333)
246 1u94_A RECA protein, recombina 96.2 0.011 3.7E-07 63.1 8.9 82 174-263 62-151 (356)
247 1xp8_A RECA protein, recombina 96.2 0.012 4.1E-07 62.9 9.2 82 174-263 73-162 (366)
248 2z43_A DNA repair and recombin 96.2 0.023 8E-07 60.0 11.4 89 174-263 106-213 (324)
249 1qvr_A CLPB protein; coiled co 96.1 0.0081 2.8E-07 72.7 8.4 45 155-199 559-612 (854)
250 2zr9_A Protein RECA, recombina 96.1 0.014 4.6E-07 62.3 9.1 82 174-263 60-149 (349)
251 1n0w_A DNA repair protein RAD5 96.1 0.027 9.4E-07 56.6 11.0 88 174-263 23-129 (243)
252 3t15_A Ribulose bisphosphate c 95.9 0.0096 3.3E-07 62.0 6.9 26 174-199 35-60 (293)
253 1v5w_A DMC1, meiotic recombina 95.9 0.03 1E-06 59.6 10.8 58 174-233 121-182 (343)
254 1jr3_D DNA polymerase III, del 95.9 0.072 2.5E-06 56.7 13.5 163 166-353 9-183 (343)
255 2qgz_A Helicase loader, putati 95.8 0.0087 3E-07 62.7 5.9 53 160-214 134-189 (308)
256 1g5t_A COB(I)alamin adenosyltr 95.5 0.0073 2.5E-07 57.8 3.6 110 175-292 28-163 (196)
257 1rz3_A Hypothetical protein rb 95.5 0.012 4.3E-07 57.3 5.2 41 159-199 3-46 (201)
258 3ice_A Transcription terminati 95.5 0.05 1.7E-06 57.5 9.9 95 165-264 163-272 (422)
259 2i1q_A DNA repair and recombin 95.4 0.044 1.5E-06 57.8 9.8 59 174-233 97-168 (322)
260 2b8t_A Thymidine kinase; deoxy 95.4 0.0053 1.8E-07 60.6 2.3 110 174-293 11-127 (223)
261 3lda_A DNA repair protein RAD5 95.4 0.073 2.5E-06 57.6 11.3 59 174-233 177-238 (400)
262 3rfe_A Platelet glycoprotein I 95.4 0.021 7.1E-07 51.1 5.9 33 581-613 32-65 (130)
263 4a74_A DNA repair and recombin 95.2 0.062 2.1E-06 53.4 9.6 58 174-232 24-84 (231)
264 2px0_A Flagellar biosynthesis 95.2 0.055 1.9E-06 56.1 9.2 85 174-262 104-191 (296)
265 1pzn_A RAD51, DNA repair and r 95.1 0.044 1.5E-06 58.4 8.5 89 174-264 130-242 (349)
266 3dm5_A SRP54, signal recogniti 95.1 0.082 2.8E-06 57.6 10.6 26 174-199 99-124 (443)
267 3c8u_A Fructokinase; YP_612366 95.0 0.017 5.8E-07 56.7 4.6 38 162-199 7-46 (208)
268 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.055 1.9E-06 53.8 8.4 84 174-263 22-133 (235)
269 3cf2_A TER ATPase, transitiona 95.0 0.061 2.1E-06 63.3 9.7 171 154-347 477-682 (806)
270 2ffh_A Protein (FFH); SRP54, s 94.9 0.092 3.1E-06 57.1 10.4 83 175-261 98-188 (425)
271 1j8m_F SRP54, signal recogniti 94.9 0.06 2.1E-06 55.8 8.5 85 175-262 98-189 (297)
272 2r44_A Uncharacterized protein 94.9 0.019 6.6E-07 60.9 4.9 44 154-199 27-70 (331)
273 2ck3_D ATP synthase subunit be 94.8 0.1 3.4E-06 56.9 10.0 97 165-263 142-263 (482)
274 1vma_A Cell division protein F 94.6 0.07 2.4E-06 55.5 8.3 86 174-263 103-196 (306)
275 3bh0_A DNAB-like replicative h 94.6 0.16 5.5E-06 53.2 11.0 53 174-231 67-119 (315)
276 3lw7_A Adenylate kinase relate 94.5 0.018 6E-07 54.6 3.2 23 176-199 2-24 (179)
277 3kb2_A SPBC2 prophage-derived 94.5 0.019 6.4E-07 54.2 3.4 24 176-199 2-25 (173)
278 1qhx_A CPT, protein (chloramph 94.5 0.019 6.5E-07 54.6 3.3 24 176-199 4-27 (178)
279 3rfe_A Platelet glycoprotein I 94.4 0.042 1.4E-06 49.1 5.2 56 583-641 11-68 (130)
280 2xxa_A Signal recognition part 94.4 0.12 4.2E-06 56.5 9.9 87 174-262 99-192 (433)
281 1fx0_B ATP synthase beta chain 94.4 0.12 4.2E-06 56.5 9.7 96 166-263 155-276 (498)
282 2hf9_A Probable hydrogenase ni 94.4 0.036 1.2E-06 55.0 5.2 38 162-199 25-62 (226)
283 1kgd_A CASK, peripheral plasma 94.3 0.022 7.6E-07 54.3 3.3 25 175-199 5-29 (180)
284 2dr3_A UPF0273 protein PH0284; 94.3 0.11 3.9E-06 52.0 8.9 40 174-216 22-61 (247)
285 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.029 1E-06 62.6 4.7 43 155-199 23-65 (500)
286 3vaa_A Shikimate kinase, SK; s 94.3 0.024 8.3E-07 55.1 3.6 26 174-199 24-49 (199)
287 2ga8_A Hypothetical 39.9 kDa p 94.2 0.044 1.5E-06 57.6 5.4 43 157-199 2-48 (359)
288 1zp6_A Hypothetical protein AT 94.2 0.023 7.8E-07 54.8 3.1 26 174-199 8-33 (191)
289 3tqc_A Pantothenate kinase; bi 94.2 0.16 5.6E-06 52.9 9.7 78 174-253 91-171 (321)
290 1g8p_A Magnesium-chelatase 38 94.1 0.023 7.9E-07 60.8 3.3 46 154-199 24-69 (350)
291 3trf_A Shikimate kinase, SK; a 94.1 0.027 9.1E-07 54.0 3.4 25 175-199 5-29 (185)
292 1sky_E F1-ATPase, F1-ATP synth 94.1 0.14 4.8E-06 55.9 9.4 96 166-263 141-255 (473)
293 1ly1_A Polynucleotide kinase; 94.1 0.027 9.3E-07 53.6 3.4 22 176-197 3-24 (181)
294 3hws_A ATP-dependent CLP prote 94.1 0.039 1.3E-06 59.4 5.0 45 155-199 16-75 (363)
295 4a1f_A DNAB helicase, replicat 94.0 0.37 1.3E-05 50.6 12.2 53 174-231 45-97 (338)
296 1odf_A YGR205W, hypothetical 3 94.0 0.046 1.6E-06 56.5 5.2 27 173-199 29-55 (290)
297 1kag_A SKI, shikimate kinase I 94.0 0.023 7.8E-07 53.8 2.7 24 176-199 5-28 (173)
298 1um8_A ATP-dependent CLP prote 94.0 0.042 1.4E-06 59.5 5.1 46 154-199 21-96 (376)
299 3l0o_A Transcription terminati 94.0 0.23 7.8E-06 52.5 10.3 36 164-199 163-199 (427)
300 2wsm_A Hydrogenase expression/ 93.9 0.038 1.3E-06 54.6 4.1 42 158-199 13-54 (221)
301 3uie_A Adenylyl-sulfate kinase 93.8 0.038 1.3E-06 53.7 4.0 27 173-199 23-49 (200)
302 1ls1_A Signal recognition part 93.8 0.17 5.8E-06 52.4 9.1 84 175-262 98-189 (295)
303 3cmu_A Protein RECA, recombina 93.8 0.11 3.7E-06 66.8 8.9 82 174-263 1426-1515(2050)
304 3kl4_A SRP54, signal recogniti 93.7 0.19 6.4E-06 54.8 9.6 26 174-199 96-121 (433)
305 1nks_A Adenylate kinase; therm 93.7 0.034 1.2E-06 53.6 3.4 24 176-199 2-25 (194)
306 3t61_A Gluconokinase; PSI-biol 93.7 0.027 9.4E-07 54.8 2.7 25 175-199 18-42 (202)
307 2yvu_A Probable adenylyl-sulfa 93.7 0.036 1.2E-06 53.1 3.5 26 174-199 12-37 (186)
308 3tr0_A Guanylate kinase, GMP k 93.7 0.033 1.1E-06 54.3 3.2 25 175-199 7-31 (205)
309 1ypw_A Transitional endoplasmi 93.7 0.0073 2.5E-07 72.2 -1.9 46 154-199 477-535 (806)
310 3iij_A Coilin-interacting nucl 93.6 0.032 1.1E-06 53.1 3.0 25 175-199 11-35 (180)
311 3e70_C DPA, signal recognition 93.6 0.23 8E-06 52.1 9.8 58 173-233 127-185 (328)
312 1kht_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 53.3 3.3 24 176-199 4-27 (192)
313 4eun_A Thermoresistant glucoki 93.6 0.039 1.3E-06 53.6 3.6 27 173-199 27-53 (200)
314 1knq_A Gluconate kinase; ALFA/ 93.6 0.038 1.3E-06 52.3 3.4 25 175-199 8-32 (175)
315 2rhm_A Putative kinase; P-loop 93.6 0.041 1.4E-06 53.0 3.7 25 175-199 5-29 (193)
316 3a00_A Guanylate kinase, GMP k 93.5 0.031 1.1E-06 53.7 2.7 24 176-199 2-25 (186)
317 3tau_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 54.1 3.5 26 174-199 7-32 (208)
318 1ye8_A Protein THEP1, hypothet 93.5 0.038 1.3E-06 52.5 3.3 23 177-199 2-24 (178)
319 1ex7_A Guanylate kinase; subst 93.5 0.026 9E-07 53.9 2.1 24 176-199 2-25 (186)
320 1zuh_A Shikimate kinase; alpha 93.5 0.04 1.4E-06 51.8 3.4 26 174-199 6-31 (168)
321 2ze6_A Isopentenyl transferase 93.5 0.039 1.3E-06 55.9 3.5 24 176-199 2-25 (253)
322 2bdt_A BH3686; alpha-beta prot 93.5 0.04 1.4E-06 52.9 3.4 23 176-198 3-25 (189)
323 2qor_A Guanylate kinase; phosp 93.4 0.035 1.2E-06 54.2 2.9 26 174-199 11-36 (204)
324 1via_A Shikimate kinase; struc 93.4 0.034 1.2E-06 52.7 2.8 24 176-199 5-28 (175)
325 3jvv_A Twitching mobility prot 93.4 0.13 4.5E-06 54.7 7.6 114 173-295 121-234 (356)
326 3umf_A Adenylate kinase; rossm 93.4 0.045 1.5E-06 53.7 3.6 26 174-199 28-53 (217)
327 2bbw_A Adenylate kinase 4, AK4 93.4 0.043 1.5E-06 55.3 3.6 26 174-199 26-51 (246)
328 3asz_A Uridine kinase; cytidin 93.3 0.046 1.6E-06 53.6 3.6 26 174-199 5-30 (211)
329 2c95_A Adenylate kinase 1; tra 93.3 0.046 1.6E-06 52.8 3.5 26 174-199 8-33 (196)
330 2jaq_A Deoxyguanosine kinase; 93.3 0.042 1.5E-06 53.4 3.3 23 177-199 2-24 (205)
331 1y63_A LMAJ004144AAA protein; 93.3 0.048 1.6E-06 52.2 3.5 25 174-198 9-33 (184)
332 4gp7_A Metallophosphoesterase; 93.2 0.035 1.2E-06 52.4 2.5 23 174-196 8-30 (171)
333 2j41_A Guanylate kinase; GMP, 93.2 0.047 1.6E-06 53.3 3.5 25 175-199 6-30 (207)
334 2yhs_A FTSY, cell division pro 93.2 0.31 1.1E-05 53.6 10.3 26 174-199 292-317 (503)
335 1gvn_B Zeta; postsegregational 93.2 0.076 2.6E-06 54.8 5.2 26 174-199 32-57 (287)
336 1cke_A CK, MSSA, protein (cyti 93.2 0.044 1.5E-06 54.4 3.3 24 176-199 6-29 (227)
337 1lvg_A Guanylate kinase, GMP k 93.2 0.037 1.3E-06 53.7 2.7 25 175-199 4-28 (198)
338 1tev_A UMP-CMP kinase; ploop, 93.2 0.049 1.7E-06 52.5 3.5 25 175-199 3-27 (196)
339 2iyv_A Shikimate kinase, SK; t 93.2 0.037 1.3E-06 52.9 2.6 24 176-199 3-26 (184)
340 1g41_A Heat shock protein HSLU 93.1 0.059 2E-06 58.8 4.4 46 154-199 15-74 (444)
341 2if2_A Dephospho-COA kinase; a 93.1 0.045 1.6E-06 53.3 3.2 22 176-197 2-23 (204)
342 1ukz_A Uridylate kinase; trans 93.1 0.054 1.9E-06 52.7 3.8 26 174-199 14-39 (203)
343 3fwy_A Light-independent proto 93.1 0.072 2.5E-06 55.7 4.9 41 173-216 46-86 (314)
344 3hjn_A DTMP kinase, thymidylat 93.1 0.18 6E-06 48.8 7.3 49 177-228 2-50 (197)
345 3ney_A 55 kDa erythrocyte memb 93.1 0.053 1.8E-06 52.2 3.5 26 174-199 18-43 (197)
346 3oaa_A ATP synthase subunit al 93.0 0.23 7.9E-06 54.3 8.7 95 166-264 152-265 (513)
347 2bwj_A Adenylate kinase 5; pho 93.0 0.052 1.8E-06 52.6 3.4 25 175-199 12-36 (199)
348 3cm0_A Adenylate kinase; ATP-b 93.0 0.054 1.8E-06 51.8 3.4 25 175-199 4-28 (186)
349 1xjc_A MOBB protein homolog; s 93.0 0.058 2E-06 50.5 3.4 26 174-199 3-28 (169)
350 2qt1_A Nicotinamide riboside k 92.9 0.056 1.9E-06 52.8 3.5 26 174-199 20-45 (207)
351 1uf9_A TT1252 protein; P-loop, 92.9 0.061 2.1E-06 52.3 3.7 26 173-198 6-31 (203)
352 2vli_A Antibiotic resistance p 92.9 0.045 1.5E-06 52.2 2.7 25 175-199 5-29 (183)
353 2p5t_B PEZT; postsegregational 92.9 0.083 2.8E-06 53.5 4.8 26 174-199 31-56 (253)
354 1e6c_A Shikimate kinase; phosp 92.8 0.047 1.6E-06 51.5 2.8 24 176-199 3-26 (173)
355 1jjv_A Dephospho-COA kinase; P 92.8 0.05 1.7E-06 53.1 3.0 22 176-197 3-24 (206)
356 2qe7_A ATP synthase subunit al 92.8 0.11 3.8E-06 56.9 5.9 94 166-264 152-265 (502)
357 2j37_W Signal recognition part 92.8 0.43 1.5E-05 53.0 10.9 38 174-214 100-137 (504)
358 2plr_A DTMP kinase, probable t 92.8 0.063 2.2E-06 52.5 3.7 24 176-199 5-28 (213)
359 1tue_A Replication protein E1; 92.7 0.088 3E-06 50.5 4.4 37 163-199 45-82 (212)
360 1znw_A Guanylate kinase, GMP k 92.7 0.058 2E-06 52.8 3.3 26 174-199 19-44 (207)
361 1qf9_A UMP/CMP kinase, protein 92.7 0.061 2.1E-06 51.7 3.5 25 175-199 6-30 (194)
362 3vr4_D V-type sodium ATPase su 92.7 0.11 3.9E-06 56.1 5.8 97 166-263 141-258 (465)
363 1uj2_A Uridine-cytidine kinase 92.7 0.064 2.2E-06 54.3 3.7 27 173-199 20-46 (252)
364 1htw_A HI0065; nucleotide-bind 92.7 0.065 2.2E-06 49.7 3.4 27 173-199 31-57 (158)
365 2cdn_A Adenylate kinase; phosp 92.7 0.06 2E-06 52.3 3.3 25 175-199 20-44 (201)
366 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.064 2.2E-06 54.6 3.7 25 175-199 4-28 (260)
367 3aez_A Pantothenate kinase; tr 92.6 0.065 2.2E-06 56.0 3.7 27 173-199 88-114 (312)
368 2pt5_A Shikimate kinase, SK; a 92.6 0.063 2.1E-06 50.3 3.3 23 177-199 2-24 (168)
369 2z0h_A DTMP kinase, thymidylat 92.6 0.12 4.2E-06 49.7 5.4 23 177-199 2-24 (197)
370 1z6g_A Guanylate kinase; struc 92.5 0.052 1.8E-06 53.6 2.7 26 174-199 22-47 (218)
371 2r9v_A ATP synthase subunit al 92.5 0.099 3.4E-06 57.3 5.0 94 166-264 165-278 (515)
372 2grj_A Dephospho-COA kinase; T 92.5 0.066 2.3E-06 51.5 3.3 26 174-199 11-36 (192)
373 2pbr_A DTMP kinase, thymidylat 92.5 0.066 2.2E-06 51.5 3.3 23 177-199 2-24 (195)
374 3tlx_A Adenylate kinase 2; str 92.5 0.12 4E-06 52.0 5.3 27 173-199 27-53 (243)
375 2jeo_A Uridine-cytidine kinase 92.4 0.076 2.6E-06 53.5 3.8 26 174-199 24-49 (245)
376 2f1r_A Molybdopterin-guanine d 92.4 0.056 1.9E-06 50.9 2.5 24 176-199 3-26 (171)
377 4e22_A Cytidylate kinase; P-lo 92.3 0.069 2.4E-06 54.0 3.4 26 174-199 26-51 (252)
378 3fb4_A Adenylate kinase; psych 92.3 0.071 2.4E-06 52.4 3.4 23 177-199 2-24 (216)
379 1zd8_A GTP:AMP phosphotransfer 92.3 0.072 2.5E-06 52.9 3.4 25 175-199 7-31 (227)
380 2wwf_A Thymidilate kinase, put 92.2 0.079 2.7E-06 51.9 3.6 25 175-199 10-34 (212)
381 1s96_A Guanylate kinase, GMP k 92.2 0.072 2.5E-06 52.5 3.2 26 174-199 15-40 (219)
382 1q57_A DNA primase/helicase; d 92.2 0.55 1.9E-05 52.8 11.0 54 174-231 241-294 (503)
383 1nn5_A Similar to deoxythymidy 92.2 0.08 2.7E-06 51.9 3.6 26 174-199 8-33 (215)
384 1rj9_A FTSY, signal recognitio 92.1 0.079 2.7E-06 55.1 3.6 26 174-199 101-126 (304)
385 2r6a_A DNAB helicase, replicat 92.1 2.3 8E-05 46.8 15.8 51 174-228 202-252 (454)
386 3dl0_A Adenylate kinase; phosp 92.1 0.077 2.6E-06 52.2 3.3 23 177-199 2-24 (216)
387 1gtv_A TMK, thymidylate kinase 92.1 0.048 1.6E-06 53.5 1.8 23 177-199 2-24 (214)
388 2i3b_A HCR-ntpase, human cance 92.1 0.066 2.3E-06 51.3 2.7 24 176-199 2-25 (189)
389 1aky_A Adenylate kinase; ATP:A 92.1 0.084 2.9E-06 52.1 3.6 25 175-199 4-28 (220)
390 2c61_A A-type ATP synthase non 91.9 0.13 4.5E-06 56.1 5.1 97 166-263 142-259 (469)
391 3cmu_A Protein RECA, recombina 91.9 0.3 1E-05 62.8 9.1 82 174-263 382-471 (2050)
392 3j16_B RLI1P; ribosome recycli 91.9 0.42 1.5E-05 54.6 9.5 26 174-199 102-127 (608)
393 3sr0_A Adenylate kinase; phosp 91.9 0.088 3E-06 51.3 3.4 23 177-199 2-24 (206)
394 2v54_A DTMP kinase, thymidylat 91.8 0.094 3.2E-06 50.9 3.5 25 175-199 4-28 (204)
395 2q6t_A DNAB replication FORK h 91.8 0.53 1.8E-05 51.9 10.0 54 174-231 199-252 (444)
396 1zak_A Adenylate kinase; ATP:A 91.8 0.08 2.7E-06 52.3 3.0 25 175-199 5-29 (222)
397 3end_A Light-independent proto 91.7 0.13 4.6E-06 53.7 4.9 44 173-219 39-82 (307)
398 3gqb_B V-type ATP synthase bet 91.7 0.11 3.9E-06 56.2 4.2 96 166-263 137-261 (464)
399 3cmw_A Protein RECA, recombina 91.6 0.28 9.7E-06 62.2 8.3 82 174-263 382-471 (1706)
400 2pez_A Bifunctional 3'-phospho 91.6 0.1 3.4E-06 49.6 3.4 25 175-199 5-29 (179)
401 4edh_A DTMP kinase, thymidylat 91.5 0.34 1.2E-05 47.3 7.2 25 175-199 6-30 (213)
402 1m7g_A Adenylylsulfate kinase; 91.5 0.1 3.5E-06 51.1 3.5 27 173-199 23-49 (211)
403 3d3q_A TRNA delta(2)-isopenten 91.5 0.1 3.4E-06 54.7 3.5 24 176-199 8-31 (340)
404 1np6_A Molybdopterin-guanine d 91.5 0.11 3.6E-06 49.1 3.4 25 175-199 6-30 (174)
405 3k1j_A LON protease, ATP-depen 91.5 0.12 4.3E-06 59.5 4.7 43 155-199 42-84 (604)
406 3mfy_A V-type ATP synthase alp 91.5 0.31 1E-05 53.9 7.3 58 165-227 216-275 (588)
407 2ck3_A ATP synthase subunit al 91.5 0.18 6E-06 55.5 5.5 98 166-264 152-273 (510)
408 2ehv_A Hypothetical protein PH 91.5 0.092 3.1E-06 52.9 3.1 24 174-197 29-52 (251)
409 3vr4_A V-type sodium ATPase ca 91.4 0.21 7.2E-06 55.4 6.0 94 165-263 221-339 (600)
410 3lnc_A Guanylate kinase, GMP k 91.4 0.07 2.4E-06 53.2 2.1 25 175-199 27-52 (231)
411 3r20_A Cytidylate kinase; stru 91.4 0.11 3.6E-06 51.6 3.3 25 175-199 9-33 (233)
412 2onk_A Molybdate/tungstate ABC 91.4 0.1 3.6E-06 52.1 3.3 26 173-199 23-48 (240)
413 3p32_A Probable GTPase RV1496/ 91.4 0.27 9.2E-06 52.5 6.8 37 163-199 65-103 (355)
414 3b9q_A Chloroplast SRP recepto 91.3 0.11 3.8E-06 54.0 3.6 26 174-199 99-124 (302)
415 3nwj_A ATSK2; P loop, shikimat 91.3 0.088 3E-06 53.0 2.7 25 175-199 48-72 (250)
416 3b85_A Phosphate starvation-in 91.2 0.093 3.2E-06 51.2 2.7 24 175-198 22-45 (208)
417 3ake_A Cytidylate kinase; CMP 91.2 0.11 3.8E-06 50.5 3.4 23 177-199 4-26 (208)
418 3cmw_A Protein RECA, recombina 91.2 0.33 1.1E-05 61.6 8.2 82 174-263 1430-1519(1706)
419 1vht_A Dephospho-COA kinase; s 91.2 0.12 4.1E-06 50.9 3.6 23 175-197 4-26 (218)
420 1sq5_A Pantothenate kinase; P- 91.2 0.12 4.1E-06 54.0 3.7 26 174-199 79-104 (308)
421 3v9p_A DTMP kinase, thymidylat 91.1 0.23 7.7E-06 49.1 5.4 26 174-199 24-49 (227)
422 3be4_A Adenylate kinase; malar 91.1 0.12 4E-06 51.0 3.3 24 176-199 6-29 (217)
423 2f6r_A COA synthase, bifunctio 91.0 0.12 4.1E-06 53.2 3.5 23 174-196 74-96 (281)
424 1e4v_A Adenylate kinase; trans 91.0 0.12 4E-06 50.8 3.3 23 177-199 2-24 (214)
425 2pcj_A ABC transporter, lipopr 91.0 0.095 3.3E-06 51.9 2.6 26 174-199 29-54 (224)
426 4eaq_A DTMP kinase, thymidylat 91.0 0.22 7.4E-06 49.4 5.2 26 174-199 25-50 (229)
427 3tif_A Uncharacterized ABC tra 91.0 0.11 3.7E-06 51.9 3.0 26 174-199 30-55 (235)
428 2xb4_A Adenylate kinase; ATP-b 91.0 0.12 4.1E-06 51.1 3.3 23 177-199 2-24 (223)
429 1cr0_A DNA primase/helicase; R 90.9 0.26 9E-06 51.1 6.1 52 174-229 34-85 (296)
430 3exa_A TRNA delta(2)-isopenten 90.9 0.14 4.7E-06 52.8 3.7 25 175-199 3-27 (322)
431 3crm_A TRNA delta(2)-isopenten 90.9 0.12 4.2E-06 53.7 3.4 24 176-199 6-29 (323)
432 1fx0_A ATP synthase alpha chai 90.8 0.13 4.6E-06 56.3 3.7 86 174-264 162-266 (507)
433 1oix_A RAS-related protein RAB 90.8 0.13 4.3E-06 49.5 3.2 25 175-199 29-53 (191)
434 1zu4_A FTSY; GTPase, signal re 90.7 0.16 5.5E-06 53.2 4.1 38 174-214 104-141 (320)
435 4tmk_A Protein (thymidylate ki 90.7 0.4 1.4E-05 46.8 6.7 52 176-229 4-55 (213)
436 3a8t_A Adenylate isopentenyltr 90.6 0.13 4.4E-06 53.7 3.2 25 175-199 40-64 (339)
437 1ak2_A Adenylate kinase isoenz 90.6 0.15 5E-06 50.9 3.6 25 175-199 16-40 (233)
438 2cbz_A Multidrug resistance-as 90.6 0.11 3.8E-06 51.9 2.6 26 174-199 30-55 (237)
439 2d2e_A SUFC protein; ABC-ATPas 90.4 0.14 4.7E-06 51.7 3.2 25 174-198 28-52 (250)
440 2og2_A Putative signal recogni 90.4 0.15 5.2E-06 54.1 3.6 26 174-199 156-181 (359)
441 3iqw_A Tail-anchored protein t 90.3 0.35 1.2E-05 50.9 6.4 49 170-221 11-59 (334)
442 3io3_A DEHA2D07832P; chaperone 90.3 0.29 9.8E-06 51.9 5.7 49 170-219 13-61 (348)
443 1b0u_A Histidine permease; ABC 90.3 0.12 4.1E-06 52.5 2.6 26 174-199 31-56 (262)
444 3gfo_A Cobalt import ATP-bindi 90.3 0.13 4.5E-06 52.5 2.9 26 174-199 33-58 (275)
445 1a7j_A Phosphoribulokinase; tr 90.2 0.1 3.4E-06 54.0 2.1 26 174-199 4-29 (290)
446 2dyk_A GTP-binding protein; GT 90.2 0.16 5.5E-06 46.8 3.3 24 176-199 2-25 (161)
447 1ji0_A ABC transporter; ATP bi 90.2 0.12 4.2E-06 51.6 2.6 26 174-199 31-56 (240)
448 1sgw_A Putative ABC transporte 90.1 0.11 3.6E-06 51.0 2.0 26 174-199 34-59 (214)
449 2zu0_C Probable ATP-dependent 90.1 0.15 5E-06 52.0 3.1 25 174-198 45-69 (267)
450 2pze_A Cystic fibrosis transme 90.1 0.13 4.4E-06 51.1 2.6 26 174-199 33-58 (229)
451 2eyu_A Twitching motility prot 90.1 0.16 5.5E-06 51.5 3.4 110 173-294 23-135 (261)
452 2olj_A Amino acid ABC transpor 90.1 0.13 4.4E-06 52.2 2.6 26 174-199 49-74 (263)
453 1g6h_A High-affinity branched- 90.0 0.13 4.4E-06 52.1 2.6 26 174-199 32-57 (257)
454 2f9l_A RAB11B, member RAS onco 90.0 0.16 5.5E-06 49.0 3.3 24 176-199 6-29 (199)
455 3foz_A TRNA delta(2)-isopenten 90.0 0.17 5.7E-06 52.1 3.4 25 175-199 10-34 (316)
456 2v9p_A Replication protein E1; 90.0 0.16 5.4E-06 52.6 3.3 27 173-199 124-150 (305)
457 1mv5_A LMRA, multidrug resista 89.9 0.14 4.7E-06 51.4 2.7 26 174-199 27-52 (243)
458 4g1u_C Hemin import ATP-bindin 89.9 0.15 5E-06 52.0 2.9 26 174-199 36-61 (266)
459 2ff7_A Alpha-hemolysin translo 89.9 0.14 4.6E-06 51.6 2.6 26 174-199 34-59 (247)
460 2wji_A Ferrous iron transport 89.9 0.15 5.2E-06 47.5 2.9 23 176-198 4-26 (165)
461 1yrb_A ATP(GTP)binding protein 89.9 0.3 1E-05 49.4 5.4 26 174-199 13-38 (262)
462 2r8r_A Sensor protein; KDPD, P 89.8 0.28 9.5E-06 48.0 4.7 37 177-216 8-44 (228)
463 1vpl_A ABC transporter, ATP-bi 89.8 0.14 4.7E-06 51.8 2.6 26 174-199 40-65 (256)
464 2ghi_A Transport protein; mult 89.6 0.14 4.9E-06 51.8 2.6 26 174-199 45-70 (260)
465 2ixe_A Antigen peptide transpo 89.6 0.15 5E-06 52.1 2.6 26 174-199 44-69 (271)
466 2ged_A SR-beta, signal recogni 89.5 0.31 1.1E-05 46.5 4.9 26 174-199 47-72 (193)
467 2qi9_C Vitamin B12 import ATP- 89.5 0.15 5.1E-06 51.3 2.6 26 174-199 25-50 (249)
468 1cp2_A CP2, nitrogenase iron p 89.5 0.3 1E-05 49.8 5.0 39 176-217 2-40 (269)
469 2zej_A Dardarin, leucine-rich 89.5 0.13 4.5E-06 48.9 2.1 22 177-198 4-25 (184)
470 1ltq_A Polynucleotide kinase; 89.4 0.18 6.3E-06 52.4 3.4 23 176-198 3-25 (301)
471 2ce2_X GTPase HRAS; signaling 89.4 0.18 6.1E-06 46.6 3.0 23 177-199 5-27 (166)
472 3sop_A Neuronal-specific septi 89.4 0.19 6.3E-06 51.3 3.3 23 177-199 4-26 (270)
473 2yz2_A Putative ABC transporte 89.4 0.15 5.3E-06 51.8 2.6 26 174-199 32-57 (266)
474 2nq2_C Hypothetical ABC transp 89.4 0.15 5.3E-06 51.3 2.6 26 174-199 30-55 (253)
475 2qmh_A HPR kinase/phosphorylas 89.4 0.2 6.7E-06 47.8 3.1 25 175-199 34-58 (205)
476 3f9v_A Minichromosome maintena 89.4 0.096 3.3E-06 60.1 1.2 46 154-199 295-351 (595)
477 2ihy_A ABC transporter, ATP-bi 89.2 0.16 5.4E-06 52.1 2.6 26 174-199 46-71 (279)
478 3gqb_A V-type ATP synthase alp 89.2 0.21 7.2E-06 55.2 3.6 57 166-227 211-269 (578)
479 1p9r_A General secretion pathw 89.2 0.56 1.9E-05 50.9 7.0 86 172-266 164-249 (418)
480 1nlf_A Regulatory protein REPA 89.1 0.19 6.4E-06 51.7 3.1 26 174-199 29-54 (279)
481 1z2a_A RAS-related protein RAB 89.1 0.19 6.6E-06 46.6 2.9 24 176-199 6-29 (168)
482 4hlc_A DTMP kinase, thymidylat 89.1 0.88 3E-05 44.0 7.7 24 176-199 3-26 (205)
483 2wjg_A FEOB, ferrous iron tran 89.1 0.2 6.9E-06 47.7 3.1 23 176-198 8-30 (188)
484 1q3t_A Cytidylate kinase; nucl 89.0 0.23 7.7E-06 49.6 3.6 26 174-199 15-40 (236)
485 3lv8_A DTMP kinase, thymidylat 88.9 0.51 1.7E-05 46.8 6.0 37 175-213 27-63 (236)
486 3bgw_A DNAB-like replicative h 88.9 0.76 2.6E-05 50.5 8.0 52 174-230 196-247 (444)
487 3kjh_A CO dehydrogenase/acetyl 88.8 0.49 1.7E-05 47.4 6.0 42 178-222 3-44 (254)
488 1zj6_A ADP-ribosylation factor 88.8 0.36 1.2E-05 45.8 4.8 34 164-198 6-39 (187)
489 1tq4_A IIGP1, interferon-induc 88.8 0.28 9.6E-06 53.1 4.3 25 174-198 68-92 (413)
490 3con_A GTPase NRAS; structural 88.8 0.21 7.1E-06 47.7 3.0 24 176-199 22-45 (190)
491 3zvl_A Bifunctional polynucleo 88.7 0.2 7E-06 54.7 3.2 27 173-199 256-282 (416)
492 1svm_A Large T antigen; AAA+ f 88.7 0.22 7.5E-06 53.3 3.3 27 173-199 167-193 (377)
493 2orw_A Thymidine kinase; TMTK, 88.6 0.33 1.1E-05 46.2 4.3 24 176-199 4-27 (184)
494 3nh6_A ATP-binding cassette SU 88.6 0.19 6.6E-06 52.1 2.7 26 174-199 79-104 (306)
495 3eph_A TRNA isopentenyltransfe 88.6 0.24 8.1E-06 53.0 3.4 24 176-199 3-26 (409)
496 1u8z_A RAS-related protein RAL 88.5 0.23 7.8E-06 46.0 3.0 24 176-199 5-28 (168)
497 2ocp_A DGK, deoxyguanosine kin 88.4 0.27 9.2E-06 49.2 3.6 25 175-199 2-26 (241)
498 2nzj_A GTP-binding protein REM 88.3 0.2 6.9E-06 46.9 2.5 24 176-199 5-28 (175)
499 2afh_E Nitrogenase iron protei 88.3 0.35 1.2E-05 49.9 4.5 40 175-217 2-41 (289)
500 2pjz_A Hypothetical protein ST 88.3 0.2 6.9E-06 50.8 2.6 24 175-198 30-53 (263)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.5e-49 Score=455.85 Aligned_cols=306 Identities=16% Similarity=0.141 Sum_probs=251.1
Q ss_pred ccchhhHHHHHHHHhcC---CceEEEEEcCCCchhHHHHHHHHH--hhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHH
Q 035887 157 VGLDSTFDKVWRCLIQE---QVGIIGLHGMGGVGKTTLLTQINN--KFLDAPNNFEVVIWVVVSKDM--QLESVQEKIGE 229 (886)
Q Consensus 157 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~ 229 (886)
|||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +. +++.+|+.++||++++.+ +...++.+|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 69999999999999754 689999999999999999999998 45 668899999999999985 89999999999
Q ss_pred HhCCCC---------CCCHHHHHHHHHHHhccC-cEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhccC
Q 035887 230 RIGFLE---------NRSLEEKASGIFKILSKK-KFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGLME 299 (886)
Q Consensus 230 ~l~~~~---------~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~~ 299 (886)
+++... ..+.+.+...+++.|+++ ||||||||||+..++ .+ + ...||+||||||++.++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--HHTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c--ccCCCEEEEEcCCHHHHHHcC
Confidence 998652 234567789999999996 999999999998755 11 1 127999999999999998876
Q ss_pred -ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 035887 300 -TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRSA 378 (886)
Q Consensus 300 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 378 (886)
...+|++++|+.+|||+||.++++... .++.+.+++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+.+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 446899999999999999999987643 246788899999999999999999999999774 2 5443 4454443
Q ss_pred cCCCCChhhhhhhHHhhhcCCCcchHHHHHh-----------hhcCCCCCcccCHHHHHHHHHhc--CCcCCccCcchhh
Q 035887 379 SEFPGMEKEVYPLLKFSYDSLSSDVLRFCLL-----------YCSLFPEDYHIGKIELIECWIGE--GFLNGYEGINGVH 445 (886)
Q Consensus 379 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~ 445 (886)
+... ..++..++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+.........+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3211 23689999999999999 8999999 999999999999 8999999 9998764334556
Q ss_pred hhhhHHHHHHHHhcccccCC---c-eEEeehhHHHHHHHHHhhh
Q 035887 446 NKGYYIIGVLVQACLLEVGS---D-YVKMHDVIRDMALWIACEV 485 (886)
Q Consensus 446 ~~~~~~~~~L~~~sll~~~~---~-~~~mHdlv~d~a~~i~~~~ 485 (886)
+.++ |+++|+++||++... . +|+|||+||++|+++++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 6666 999999999999762 2 8999999999999988663
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-39 Score=379.37 Aligned_cols=280 Identities=16% Similarity=0.237 Sum_probs=230.2
Q ss_pred ccccchhhHHHHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 155 TIVGLDSTFDKVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEV-VIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..|||++++++|.++|.+ ++.++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 459999999999999986 568999999999999999999999876 55778986 999999999999888888877542
Q ss_pred CC---C----------CCCHHHHHHHHHHHh---ccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhh
Q 035887 233 FL---E----------NRSLEEKASGIFKIL---SKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCG 296 (886)
Q Consensus 233 ~~---~----------~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~ 296 (886)
.. . ..+.+++...+++.| .++|+||||||||+...|+.+. .||+||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------CCeEEEEeccChHHHH
Confidence 11 0 112345566777766 6799999999999988888641 5899999999999886
Q ss_pred ccCccceEEcc------CCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCC-CHHHHHH
Q 035887 297 LMETQKKFKVE------CLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKK-TPEEWNY 369 (886)
Q Consensus 297 ~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~-~~~~w~~ 369 (886)
.+.....+.++ +|+.+|||+||.+..+.. ..++..+| |+|+||||+++|+.|+.+. +.++|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 55444566676 999999999999985432 12233443 9999999999999999863 6788875
Q ss_pred HHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchH-HHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhh
Q 035887 370 AIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVL-RFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKG 448 (886)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 448 (886)
. ....+..+|.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.+
T Consensus 350 ~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedA 404 (1221)
T 1vt4_I 350 V-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDV 404 (1221)
T ss_dssp C-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHH
T ss_pred C-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHH
Confidence 2 125799999999999999 78 99999999999999999999999999876 1357
Q ss_pred hHHHHHHHHhcccccCC-c-eEEeehhHHHHH
Q 035887 449 YYIIGVLVQACLLEVGS-D-YVKMHDVIRDMA 478 (886)
Q Consensus 449 ~~~~~~L~~~sll~~~~-~-~~~mHdlv~d~a 478 (886)
..++++|+++||++..+ . .|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 78999999999999874 3 999999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-37 Score=397.13 Aligned_cols=306 Identities=22% Similarity=0.275 Sum_probs=253.5
Q ss_pred CCccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccCCC-CCCeEEEEEeCCCCC--HHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPN-NFEVVIWVVVSKDMQ--LESVQEKI 227 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~F~~~~wv~~s~~~~--~~~~~~~i 227 (886)
.+.||||++++++|.++|.. ++.++|+|+||||+||||||+++|++...... .|+.++|+++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45689999999999999963 57899999999999999999999998522244 456888999998543 44456777
Q ss_pred HHHhCCCC------CCCHHHHHHHHHHHhccC--cEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhc-c
Q 035887 228 GERIGFLE------NRSLEEKASGIFKILSKK--KFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGL-M 298 (886)
Q Consensus 228 ~~~l~~~~------~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~-~ 298 (886)
+..+.... ..+.+++...++..+.++ |+||||||||+..+|..+ .+||+||||||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhc
Confidence 77776533 456788899999999887 999999999998887753 568999999999999854 4
Q ss_pred CccceEEccC-CChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 035887 299 ETQKKFKVEC-LGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRS 377 (886)
Q Consensus 299 ~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~ 377 (886)
+....+.+.+ |+++||++||...++... +.+.+++++|+++|+|+||||+++|+.|+.+. ..|+.+++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667899996 999999999999985433 44566799999999999999999999998754 4799999988776
Q ss_pred ccCC-----CCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhhHHH
Q 035887 378 ASEF-----PGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGYYII 452 (886)
Q Consensus 378 ~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 452 (886)
.+.. ....+.+..+|.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ ++.++.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l 415 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDIL 415 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHH
Confidence 4332 11124699999999999999 899999999999999999999999999653 36678899
Q ss_pred HHHHHhcccccC--Cc--eEEeehhHHHHHHHHHhhh
Q 035887 453 GVLVQACLLEVG--SD--YVKMHDVIRDMALWIACEV 485 (886)
Q Consensus 453 ~~L~~~sll~~~--~~--~~~mHdlv~d~a~~i~~~~ 485 (886)
++|+++||++.. ++ .|+|||+||++|+..+.++
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999999999876 22 6999999999999987653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=341.55 Aligned_cols=300 Identities=22% Similarity=0.311 Sum_probs=238.4
Q ss_pred CCccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccC-CCCC-CeEEEEEeCCCCCHHHHHHHH-
Q 035887 153 EPTIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDA-PNNF-EVVIWVVVSKDMQLESVQEKI- 227 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~i- 227 (886)
.+.+|||+.++++|.++|.. ++.++|+|+||||+||||||++++++. .+ ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35789999999999999974 467999999999999999999999875 33 5678 58999999875 333444443
Q ss_pred --HHHhCCC------CCCCHHHHHHHHHHHhcc--CcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhhhc
Q 035887 228 --GERIGFL------ENRSLEEKASGIFKILSK--KKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVCGL 297 (886)
Q Consensus 228 --~~~l~~~------~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~ 297 (886)
+..++.. ...+.+.....++..+.+ +++||||||+|+...+..+ ..|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHh
Confidence 4455421 145677888888888887 7999999999987766532 458999999999988765
Q ss_pred cCccceEEc---cCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035887 298 METQKKFKV---ECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSGKKTPEEWNYAIEML 374 (886)
Q Consensus 298 ~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l 374 (886)
+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+|||+..+|+.++... .+|..+++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 43 334444 58999999999999987532 12245689999999999999999999998753 4799988888
Q ss_pred hhcccCC-----CCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCccCcchhhhhhh
Q 035887 375 RRSASEF-----PGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGYEGINGVHNKGY 449 (886)
Q Consensus 375 ~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 449 (886)
....... ......+..++..||+.||+ +.|.||++||+||+++.|+.+.++..|.++ .+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~ 412 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVE 412 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHH
Confidence 7653221 11224789999999999999 899999999999999999999999999542 23567
Q ss_pred HHHHHHHHhcccccC--C-c-eEEeehhHHHHHHHHH
Q 035887 450 YIIGVLVQACLLEVG--S-D-YVKMHDVIRDMALWIA 482 (886)
Q Consensus 450 ~~~~~L~~~sll~~~--~-~-~~~mHdlv~d~a~~i~ 482 (886)
.++++|+++||++.. + . .|+||+++|++++...
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 889999999999864 2 2 8999999999999773
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.6e-23 Score=227.65 Aligned_cols=303 Identities=20% Similarity=0.235 Sum_probs=233.8
Q ss_pred cccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEE
Q 035887 506 VRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYL 585 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 585 (886)
...+++++++++.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.+| .++.+.+|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 34567899999999998888877889999999999999888876 889999999999999 788876 69999999999
Q ss_pred eccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc
Q 035887 586 NLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE 665 (886)
Q Consensus 586 ~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 665 (886)
++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++.+|.... ...+..++
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------------~~~~~~l~ 177 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD---------------VTPIANLT 177 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGGCT
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC---------------chhhccCC
Confidence 999999999987 89999999999999976776665 8899999999999887542 11267888
Q ss_pred CCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCC
Q 035887 666 HLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREP 745 (886)
Q Consensus 666 ~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~ 745 (886)
+|+.|++..+....+..+ ...++|+.|+++++.. ...+ .+..+++|++|+++++. +..+.. .
T Consensus 178 ~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l-~~~~--~~~~~~~L~~L~l~~n~-l~~~~~----------~ 239 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQI-TDIT--PVANMTRLNSLKIGNNK-ITDLSP----------L 239 (347)
T ss_dssp TCSEEECTTSCCCCCGGG----GGCTTCCEEECCSSCC-CCCG--GGGGCTTCCEEECCSSC-CCCCGG----------G
T ss_pred CCCEEEccCCcccccccc----cCCCccceeecccCCC-CCCc--hhhcCCcCCEEEccCCc-cCCCcc----------h
Confidence 899998887666554432 3346889999988753 3332 26678899999998864 332211 2
Q ss_pred CCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccc-cCc
Q 035887 746 YGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIF-RNA 824 (886)
Q Consensus 746 ~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~-~~~ 824 (886)
..+++|+.|++++| .+..++.+..+++|+.|++++| .+..+. .+..+++|+.|++++|. +.... ...
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~~~l 307 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNNQ-LGNEDMEVI 307 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSSC-CCGGGHHHH
T ss_pred hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCCc-CCCcChhHh
Confidence 36889999999998 5666778889999999999988 455542 45678999999999875 44333 334
Q ss_pred CCCCCccEEeeccCCCCCCCCCCCCCCCCCceEEEcc
Q 035887 825 LPFPNLLELFVSECPNLKKLPLDINSAKEGKTVIRGD 861 (886)
Q Consensus 825 ~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~i~~~ 861 (886)
..+|+|+.|++++|+ ++.+|.......|+.+++.++
T Consensus 308 ~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp HTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC
T ss_pred hccccCCEEEccCCc-cccccChhhhhccceeehhhh
Confidence 568999999999986 666654322333777776654
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.5e-22 Score=230.84 Aligned_cols=309 Identities=18% Similarity=0.221 Sum_probs=178.2
Q ss_pred ccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEecc
Q 035887 509 WEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLS 588 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 588 (886)
+.+++.|++.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .+..+|. ++++.+|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 34566666666665555555556666666666666655554 566666666666666 5555554 6666666666666
Q ss_pred CCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEe---------------------ccCCCccccccc
Q 035887 589 ETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRM---------------------LDCGYSRKIAED 647 (886)
Q Consensus 589 ~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l---------------------~~~~~~~~~~~~ 647 (886)
+|.++.+|. +.++++|++|++++|. +..+|. ++.+++|++|++ .+|...
T Consensus 121 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~------ 190 (466)
T 1o6v_A 121 NNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS------ 190 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC------
T ss_pred CCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC------
Confidence 666666654 6666666666666664 444443 455555555554 433321
Q ss_pred ccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccC-
Q 035887 648 SVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYC- 726 (886)
Q Consensus 648 ~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~- 726 (886)
.+..+..+++|+.|.+..+....... ....++|+.|+++++. +..++ .+..+++|+.|+++++
T Consensus 191 ---------~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 191 ---------DISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDIG--TLASLTNLTDLDLANNQ 254 (466)
T ss_dssp ---------CCGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSC
T ss_pred ---------CChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccch--hhhcCCCCCEEECCCCc
Confidence 11235566666666666554433322 1224567777777664 22222 4556677777777653
Q ss_pred ----------CCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccchhhccccccCC
Q 035887 727 ----------TSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEIISAWKLGE 796 (886)
Q Consensus 727 ----------~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 796 (886)
++++.+.++.+.....+....+++|+.|++++| .+..++.++.+++|+.|+|++| .+..+.
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~------- 325 (466)
T 1o6v_A 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDIS------- 325 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCG-------
T ss_pred cccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCCch-------
Confidence 334444444433333333445667777777766 3445555667777777777776 333332
Q ss_pred CCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCCCCCCCCCceEEEcc
Q 035887 797 VPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLDINSAKEGKTVIRGD 861 (886)
Q Consensus 797 ~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~i~~~ 861 (886)
.+..+++|+.|+++++ .++.++ ....+++|+.|++.+|+ +..++.......|+.+.+.++
T Consensus 326 --~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 326 --PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp --GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCE
T ss_pred --hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCC
Confidence 2456788888888875 455553 34567888888888884 444332222223776766654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=3.5e-22 Score=236.15 Aligned_cols=145 Identities=23% Similarity=0.248 Sum_probs=121.5
Q ss_pred EcCcccCCCcccccccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc
Q 035887 495 SAGVELTKPPEVRKWEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL 572 (886)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l 572 (886)
..+.+....|. ...+++++|++++|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.+
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~ 95 (606)
T 3vq2_A 18 CMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSF 95 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCC
T ss_pred ccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccccc
Confidence 33444444443 123689999999999987765 478999999999999999998888999999999999999 67766
Q ss_pred -CccccCccCCCEEeccCCCccccc-hhhhccCCCcEeecccccccc-ccccccccCCCCCCEEEeccCCCcc
Q 035887 573 -PSGVSKLVSLQYLNLSETSIKELP-HELKALTKLKCLNLEYTRYLQ-KIPRQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 573 -p~~i~~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
|..|+++.+|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++.+|....
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 888999999999999999999887 669999999999999997433 46876 8999999999999987654
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=8.2e-22 Score=224.66 Aligned_cols=305 Identities=16% Similarity=0.256 Sum_probs=220.7
Q ss_pred cCCCcccccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCc
Q 035887 500 LTKPPEVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKL 579 (886)
Q Consensus 500 ~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L 579 (886)
....+....++++++|++.+|.+..++...++++|++|++.+|.+..+++ +..+++|++|++++| .++.+|. ++++
T Consensus 58 i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l 133 (466)
T 1o6v_A 58 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKNL 133 (466)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred CccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcCC
Confidence 33344455567788888888877766656777888888888887776665 677788888888887 6776664 7777
Q ss_pred cCCCEEeccCCCccccch--------------------hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCC
Q 035887 580 VSLQYLNLSETSIKELPH--------------------ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 580 ~~L~~L~L~~~~i~~LP~--------------------~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
.+|++|++++|.+..+|. .+.++++|++|++++|. +..++. +..+++|++|++.+|.
T Consensus 134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQ 210 (466)
T ss_dssp TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSC
T ss_pred CCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCc
Confidence 788888887776665542 26677888999999886 566765 8899999999999887
Q ss_pred CcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccc
Q 035887 640 YSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLN 719 (886)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 719 (886)
... ...+..+++|+.|++..+....++.+ ...++|+.|++++|... ..+ .+..+++|+
T Consensus 211 l~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~ 268 (466)
T 1o6v_A 211 ISD---------------ITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS-NLA--PLSGLTKLT 268 (466)
T ss_dssp CCC---------------CGGGGGCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCCC-CCG--GGTTCTTCS
T ss_pred ccc---------------cccccccCCCCEEECCCCCcccchhh----hcCCCCCEEECCCCccc-cch--hhhcCCCCC
Confidence 543 11166788999999987766554432 23468899999887532 222 256677788
Q ss_pred eEeeccC-----------CCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccchhh
Q 035887 720 KLDFAYC-----------TSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEI 788 (886)
Q Consensus 720 ~L~i~~~-----------~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i 788 (886)
.|+++++ +.++.+.++.+.....+....+++|+.|+|++| .+..+++++.+++|+.|++++| .+..+
T Consensus 269 ~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 269 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred EEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCc
Confidence 8877653 445555555544443344567899999999999 5566666899999999999999 55554
Q ss_pred ccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCC
Q 035887 789 ISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLD 847 (886)
Q Consensus 789 ~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 847 (886)
. .+..+++|+.|+++++. +..+.. ...+++|+.|++.+| .++.+|..
T Consensus 347 ~---------~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~~ 393 (466)
T 1o6v_A 347 S---------SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ-AWTNAPVN 393 (466)
T ss_dssp G---------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE-EEECCCBC
T ss_pred h---------hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC-cccCCchh
Confidence 2 46789999999999975 555543 567899999999998 45555544
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=2.1e-22 Score=220.50 Aligned_cols=281 Identities=17% Similarity=0.231 Sum_probs=219.9
Q ss_pred CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcE
Q 035887 528 PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKC 607 (886)
Q Consensus 528 ~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~ 607 (886)
...+++|++|++.++.+..++. +..+++|++|++++| .++.+|. +..+++|++|++++|.++.+| .+.++++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3567899999999998888765 788999999999999 8888886 999999999999999999986 6999999999
Q ss_pred eeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccc
Q 035887 608 LNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQ 687 (886)
Q Consensus 608 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~ 687 (886)
|++++|. +..+|. +..+++|++|++.+|.... .+..+..+++|+.|.+..+....... .
T Consensus 115 L~l~~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~--------------~~~~~~~l~~L~~L~l~~~~~~~~~~----~ 173 (347)
T 4fmz_A 115 LYLNEDN-ISDISP--LANLTKMYSLNLGANHNLS--------------DLSPLSNMTGLNYLTVTESKVKDVTP----I 173 (347)
T ss_dssp EECTTSC-CCCCGG--GTTCTTCCEEECTTCTTCC--------------CCGGGTTCTTCCEEECCSSCCCCCGG----G
T ss_pred EECcCCc-ccCchh--hccCCceeEEECCCCCCcc--------------cccchhhCCCCcEEEecCCCcCCchh----h
Confidence 9999996 677877 8899999999999986543 22337888999999988766555443 2
Q ss_pred ccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcc
Q 035887 688 QLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTW 767 (886)
Q Consensus 688 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~ 767 (886)
...++|+.|++++|. ...++ .+..+++|+.|+++++. +..+.. ...+++|+.|++++| .+..++.
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n~-l~~~~~----------~~~~~~L~~L~l~~n-~l~~~~~ 238 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQ-IEDIS--PLASLTSLHYFTAYVNQ-ITDITP----------VANMTRLNSLKIGNN-KITDLSP 238 (347)
T ss_dssp GGCTTCSEEECTTSC-CCCCG--GGGGCTTCCEEECCSSC-CCCCGG----------GGGCTTCCEEECCSS-CCCCCGG
T ss_pred ccCCCCCEEEccCCc-ccccc--cccCCCccceeecccCC-CCCCch----------hhcCCcCCEEEccCC-ccCCCcc
Confidence 334789999999885 33333 36778899999998763 332211 236899999999999 5666667
Q ss_pred cccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCC-C
Q 035887 768 LVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLP-L 846 (886)
Q Consensus 768 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp-~ 846 (886)
+..+++|+.|++++| .++.+ ..+..+++|+.|+++++ .++.++. ...+++|+.|++++|+ ++..+ .
T Consensus 239 ~~~l~~L~~L~l~~n-~l~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~ 305 (347)
T 4fmz_A 239 LANLSQLTWLEIGTN-QISDI---------NAVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLNNNQ-LGNEDME 305 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCC---------GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSSC-CCGGGHH
T ss_pred hhcCCCCCEEECCCC-ccCCC---------hhHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECcCCc-CCCcChh
Confidence 999999999999998 45554 24668999999999996 5776643 4568999999999994 54433 2
Q ss_pred CCCC-CCCCceEEEccc
Q 035887 847 DINS-AKEGKTVIRGDQ 862 (886)
Q Consensus 847 ~~~~-~~l~~l~i~~~~ 862 (886)
.... ..|+.+.++++.
T Consensus 306 ~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHTCTTCSEEECCSSS
T ss_pred HhhccccCCEEEccCCc
Confidence 2222 228888888764
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=6.3e-22 Score=220.28 Aligned_cols=302 Identities=15% Similarity=0.182 Sum_probs=229.4
Q ss_pred cccchhhhhccccceEEcCCC--CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCE
Q 035887 508 KWEDRRKISLMRNKIVILSKP--PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQY 584 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~ 584 (886)
.+.+++++++.++.+..+|.. ..+++|++|++.+|.+..+++..|..+++|++|++++| .++.+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 456888999999988888763 57889999999999888888877899999999999999 676664 55889999999
Q ss_pred EeccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcC
Q 035887 585 LNLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELIT 663 (886)
Q Consensus 585 L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (886)
|++++|.++.+|.. ++++++|++|++++|. +..++...++.+++|++|++.+|.... . .+..
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~------~~~~ 184 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------V------DLSL 184 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB----------C------CGGG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc----------c------cccc
Confidence 99999999999987 4889999999999986 566766668899999999999887543 1 2456
Q ss_pred CcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCcc
Q 035887 664 LEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTR 743 (886)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~ 743 (886)
+++|+.+++..+....+. ...+|+.|+++++. +...+. ...++|+.|+++++. +... .+.
T Consensus 185 l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~n~-l~~~--~~l------ 244 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLA-------IPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNN-LTDT--AWL------ 244 (390)
T ss_dssp CTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSC-CCEEEC---CCCSSCCEEECCSSC-CCCC--GGG------
T ss_pred ccccceeecccccccccC-------CCCcceEEECCCCe-eeeccc---cccccccEEECCCCC-Cccc--HHH------
Confidence 777888887765544322 23578889988875 333322 234788999988763 3322 222
Q ss_pred CCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccccc
Q 035887 744 EPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFR 822 (886)
Q Consensus 744 ~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~ 822 (886)
..+++|+.|+|++|......| .++.+++|+.|+|++| .++.++. ....+|+|+.|+|+++ .++.++.
T Consensus 245 --~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 245 --LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp --GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEEC--------SSSCCTTCCEEECCSS-CCCCCGG
T ss_pred --cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCc--------ccCCCCCCCEEECCCC-cceecCc
Confidence 368999999999985444333 6888999999999998 5665543 4567899999999996 6777776
Q ss_pred CcCCCCCccEEeeccCCCCCCCCCCCCCCCCCceEEEcc
Q 035887 823 NALPFPNLLELFVSECPNLKKLPLDINSAKEGKTVIRGD 861 (886)
Q Consensus 823 ~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~i~~~ 861 (886)
....+++|+.|++.+| .++.+|.... ..|+.+.+.++
T Consensus 313 ~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~L~~L~l~~N 349 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHN-SIVTLKLSTH-HTLKNLTLSHN 349 (390)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCCCCTT-CCCSEEECCSS
T ss_pred cccccCcCCEEECCCC-ccceeCchhh-ccCCEEEcCCC
Confidence 6667899999999998 5788875432 23888887754
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=224.98 Aligned_cols=277 Identities=21% Similarity=0.229 Sum_probs=140.3
Q ss_pred CcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCccccchh-hhccCCCcEee
Q 035887 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLN 609 (886)
Q Consensus 532 ~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~ 609 (886)
+++++|++++|.+..+++..|.++++|++|+|++| .++.+ |..++++.+|++|+|++|.++.+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45556666666555555545555666666666655 44433 44555566666666666655555543 45556666666
Q ss_pred ccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccccc
Q 035887 610 LEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQL 689 (886)
Q Consensus 610 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~ 689 (886)
+++|. +..++...+..+++|++|++.+|..... ....+.++++|+.|.+..+.+..+.. .....
T Consensus 111 Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~ 174 (477)
T 2id5_A 111 ISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYI-------------SHRAFSGLNSLEQLTLEKCNLTSIPT--EALSH 174 (477)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEE-------------CTTSSTTCTTCCEEEEESCCCSSCCH--HHHTT
T ss_pred CCCCc-cccCChhHccccccCCEEECCCCcccee-------------ChhhccCCCCCCEEECCCCcCcccCh--hHhcc
Confidence 66554 3333333355556666666655543220 11124445555555555444332221 01112
Q ss_pred ccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc--c
Q 035887 690 HSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT--W 767 (886)
Q Consensus 690 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~ 767 (886)
.++|+.|+++++. +..++...+..+++|+.|+++++..+..++.... ...+|+.|+|++| .+..+| .
T Consensus 175 l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~n-~l~~~~~~~ 243 (477)
T 2id5_A 175 LHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL---------YGLNLTSLSITHC-NLTAVPYLA 243 (477)
T ss_dssp CTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT---------TTCCCSEEEEESS-CCCSCCHHH
T ss_pred cCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccc---------cCccccEEECcCC-cccccCHHH
Confidence 2455666665553 2222222455566666666666555544322221 2336666666666 333444 3
Q ss_pred cccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccc-cCcCCCCCccEEeeccCCCCCCCCC
Q 035887 768 LVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIF-RNALPFPNLLELFVSECPNLKKLPL 846 (886)
Q Consensus 768 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~L~~lp~ 846 (886)
+..+++|+.|+|++|. ++.+.. ..+..+++|+.|+|+++ .++.+. .....+++|+.|++++| +++.+|.
T Consensus 244 ~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp HTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred hcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 5566666666666652 443332 23455666666666653 344432 23334566666666665 5555554
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=9.9e-22 Score=223.68 Aligned_cols=344 Identities=19% Similarity=0.165 Sum_probs=220.5
Q ss_pred cCcccCCCcccccccchhhhhccccceEEcC--CCCCCCcceeeeecCcccc-ccChhhhcCCCCCcEEEccCCCccccc
Q 035887 496 AGVELTKPPEVRKWEDRRKISLMRNKIVILS--KPPACPRLLTLFLGINRLD-TISSDFFDFMPSLKVLNLSKNRSLSQL 572 (886)
Q Consensus 496 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~-~~~~~~~~~l~~Lr~L~Ls~~~~i~~l 572 (886)
.+.+....+. ..+++++|++.+|.+..++ ...++++|++|++++|.+. .+++..|.++++|++|+|++| .++.+
T Consensus 18 ~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~ 94 (455)
T 3v47_A 18 INRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQL 94 (455)
T ss_dssp CSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEE
T ss_pred CCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCcc
Confidence 3334444444 3368999999999987753 3478999999999999775 667777999999999999999 66654
Q ss_pred -CccccCccCCCEEeccCCCccc-cchh--hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccc
Q 035887 573 -PSGVSKLVSLQYLNLSETSIKE-LPHE--LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDS 648 (886)
Q Consensus 573 -p~~i~~L~~L~~L~L~~~~i~~-LP~~--i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 648 (886)
|..++++.+|++|++++|.++. +|.. ++++++|++|++++|......|...++++++|++|++.+|......+..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 7889999999999999999985 4555 89999999999999974333465557899999999999987654222111
Q ss_pred cccC--------Ccc-------------chHHHhcCCcCCceEEEEeccchhh-hhhhcccccccccceEEEeecCCCCc
Q 035887 649 VQFG--------GSE-------------ILVEELITLEHLNVLSVTLKSFGAL-QRLLSCQQLHSSTRALELRRCEDSKS 706 (886)
Q Consensus 649 ~~~~--------~~~-------------~~~~~l~~L~~L~~L~~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~ 706 (886)
.... ... .....+..+++|+.|+++.+.+... ...........+|+.|.++++.....
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 0000 000 0000111234455555544333211 00000000113555555555422111
Q ss_pred c---------cccccc--ccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc-ccccCCCC
Q 035887 707 W---------NILSIA--DLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLVFAPNL 774 (886)
Q Consensus 707 ~---------~~~~l~--~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L 774 (886)
. ....+. ..++|+.|+++++. +..+.+.+ ...+++|+.|+|++|......+ .++.+++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSV--------FSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTT--------TTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccchhhhccCcccccccccccCceEEEecCcc-ccccchhh--------cccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 0 000111 12467777776643 33222222 2367899999999885444434 57888999
Q ss_pred cEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccc-ccCcCCCCCccEEeeccCCCCCCCCCCC-CCCC
Q 035887 775 KIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKII-FRNALPFPNLLELFVSECPNLKKLPLDI-NSAK 852 (886)
Q Consensus 775 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~-~~~~ 852 (886)
+.|+|++| .++.+.. ..+..+++|++|+|+++ .++.+ +.....+++|++|++.+| +++.+|... ...+
T Consensus 326 ~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 326 LKLNLSQN-FLGSIDS-------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLT 395 (455)
T ss_dssp CEEECCSS-CCCEECG-------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred CEEECCCC-ccCCcCh-------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCC
Confidence 99999988 4555533 24567899999999885 45655 445567899999999986 788887643 2333
Q ss_pred -CCceEEEcc
Q 035887 853 -EGKTVIRGD 861 (886)
Q Consensus 853 -l~~l~i~~~ 861 (886)
|+.+.+.++
T Consensus 396 ~L~~L~l~~N 405 (455)
T 3v47_A 396 SLQKIWLHTN 405 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEEccCC
Confidence 777777643
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=7.2e-22 Score=237.32 Aligned_cols=327 Identities=13% Similarity=0.146 Sum_probs=219.9
Q ss_pred cccccccchhhhhccccceEE------------------cCCC-C--CCCcceeeeecCccccccChhhhcCCCCCcEEE
Q 035887 504 PEVRKWEDRRKISLMRNKIVI------------------LSKP-P--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLN 562 (886)
Q Consensus 504 ~~~~~~~~~r~l~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~ 562 (886)
.....+++++.|++.+|.+.. +|.. . ++++|++|++++|.+....+..+.++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 345667889999999998876 6655 3 689999999999976544445588999999999
Q ss_pred ccCCCccc--ccCccccCcc-------CCCEEeccCCCccccch--hhhccCCCcEeeccccccccccccccccCCCCCC
Q 035887 563 LSKNRSLS--QLPSGVSKLV-------SLQYLNLSETSIKELPH--ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLE 631 (886)
Q Consensus 563 Ls~~~~i~--~lp~~i~~L~-------~L~~L~L~~~~i~~LP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~ 631 (886)
|++|..++ .+|..++++. +|++|+|++|.+..+|. .++++++|++|++++|. +..+| . ++.+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcce
Confidence 99994265 4888787776 99999999999999998 89999999999999987 56888 3 88999999
Q ss_pred EEEeccCCCcccccccccccCCccchHHHhcCCcC-CceEEEEeccchhhhhhhcccccc--cccceEEEeecCCCCccc
Q 035887 632 VLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEH-LNVLSVTLKSFGALQRLLSCQQLH--SSTRALELRRCEDSKSWN 708 (886)
Q Consensus 632 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~~~~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~ 708 (886)
+|++.+|... .+| ..+.++++ |+.|++..+.+..++. ..... ++|+.|+++++......+
T Consensus 599 ~L~Ls~N~l~-~lp-------------~~l~~l~~~L~~L~Ls~N~L~~lp~---~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 599 DLKLDYNQIE-EIP-------------EDFCAFTDQVEGLGFSHNKLKYIPN---IFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp EEECCSSCCS-CCC-------------TTSCEECTTCCEEECCSSCCCSCCS---CCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred EEECcCCccc-cch-------------HHHhhccccCCEEECcCCCCCcCch---hhhccccCCCCEEECcCCcCCCccc
Confidence 9999988765 332 22555666 7777776655443322 11111 235666666554222111
Q ss_pred c--cccc--ccCccceEeeccC-------------CCcceEEeccccccCccCC---------CCCCCccEEEeccCCcc
Q 035887 709 I--LSIA--DLKYLNKLDFAYC-------------TSLEVLRVNYAEVRTTREP---------YGFNSLQRVTIACCSRL 762 (886)
Q Consensus 709 ~--~~l~--~l~~L~~L~i~~~-------------~~l~~l~~~~~~~~~~~~~---------~~~~~L~~L~L~~c~~l 762 (886)
. ..+. .+.+|+.|+++++ +.++.+.++.+.....+.. ..+++|+.|+|++|. +
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L 740 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-L 740 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-C
T ss_pred cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-C
Confidence 0 0111 1224444444432 2333333332222211111 122389999999984 4
Q ss_pred ccCc-ccc--cCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccc------ccccccccCcCCCCCccEE
Q 035887 763 REVT-WLV--FAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVL------TKLKIIFRNALPFPNLLEL 833 (886)
Q Consensus 763 ~~l~-~l~--~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~------~~L~~i~~~~~~~p~L~~L 833 (886)
..+| .+. .+++|+.|+|++| .+..++. .+..+++|+.|+|+++ .-...++.....+++|+.|
T Consensus 741 ~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~--------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 741 TSLSDDFRATTLPYLSNMDVSYN-CFSSFPT--------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp CCCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ccchHHhhhccCCCcCEEEeCCC-CCCccch--------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 4665 455 8899999999988 4555542 5668899999999763 3344556566678999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCceEEEccc
Q 035887 834 FVSECPNLKKLPLDINSAKEGKTVIRGDQ 862 (886)
Q Consensus 834 ~i~~C~~L~~lp~~~~~~~l~~l~i~~~~ 862 (886)
++++| ++..+|.... ..|+.+++++++
T Consensus 812 ~Ls~N-~L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 812 QIGSN-DIRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp ECCSS-CCCBCCSCCC-SSSCEEECCSCT
T ss_pred ECCCC-CCCccCHhhc-CCCCEEECCCCC
Confidence 99998 4588988754 248888888764
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4.9e-22 Score=234.93 Aligned_cols=326 Identities=14% Similarity=0.142 Sum_probs=189.0
Q ss_pred ccccccchhhhhccccceEE------------------cCCC-C--CCCcceeeeecCccccccChhhhcCCCCCcEEEc
Q 035887 505 EVRKWEDRRKISLMRNKIVI------------------LSKP-P--ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNL 563 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~L 563 (886)
....+++++.|++.+|.+.. +|.. . ++++|++|++++|.+....+..+.++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 34456677777777777665 5544 3 5777777777777655433344677777777777
Q ss_pred cCCCccc--ccCccccCc------cCCCEEeccCCCccccch--hhhccCCCcEeeccccccccccccccccCCCCCCEE
Q 035887 564 SKNRSLS--QLPSGVSKL------VSLQYLNLSETSIKELPH--ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVL 633 (886)
Q Consensus 564 s~~~~i~--~lp~~i~~L------~~L~~L~L~~~~i~~LP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 633 (886)
++|..++ .+|..++++ .+|++|++++|.++.+|. .++++++|++|++++|.....+| . ++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence 7773154 477777665 777777777777777777 67777777777777776433677 3 6677777777
Q ss_pred EeccCCCcccccccccccCCccchHHHhcCCcC-CceEEEEeccchhhhhhhcc-----------------------cc-
Q 035887 634 RMLDCGYSRKIAEDSVQFGGSEILVEELITLEH-LNVLSVTLKSFGALQRLLSC-----------------------QQ- 688 (886)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~~~~~~~~~~l~~~-----------------------~~- 688 (886)
++.+|... .+| ..+.++++ |+.|+++.+.+..++..... ..
T Consensus 359 ~L~~N~l~-~lp-------------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 359 NLAYNQIT-EIP-------------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp ECCSSEEE-ECC-------------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred ECCCCccc-ccc-------------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 77766543 222 12444444 55555554443322211000 00
Q ss_pred ------cccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCcc
Q 035887 689 ------LHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRL 762 (886)
Q Consensus 689 ------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 762 (886)
...+|+.|+++++. +..++...+..+++|+.|+++++. ++.++....... .+....+++|+.|+|++|..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l- 500 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDE-NENFKNTYLLTSIDLRFNKL- 500 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEET-TEECTTGGGCCEEECCSSCC-
T ss_pred cccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccc-cccccccCCccEEECcCCcC-
Confidence 11244444444443 122222122334555555555432 222221111100 00001122888888888844
Q ss_pred ccCc-ccc--cCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccc------cccccccccCcCCCCCccEE
Q 035887 763 REVT-WLV--FAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQV------LTKLKIIFRNALPFPNLLEL 833 (886)
Q Consensus 763 ~~l~-~l~--~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~------~~~L~~i~~~~~~~p~L~~L 833 (886)
..+| .+. .+++|+.|+|++| .++.++. .+..+++|+.|+|++ +.-...++.....+++|+.|
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYN-SFSKFPT--------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSS-CCSSCCC--------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred CccChhhhhccCCCcCEEECCCC-CCCCcCh--------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 4555 454 7888888888888 4454432 456788888888854 33344556566668888888
Q ss_pred eeccCCCCCCCCCCCCCCCCCceEEEcc
Q 035887 834 FVSECPNLKKLPLDINSAKEGKTVIRGD 861 (886)
Q Consensus 834 ~i~~C~~L~~lp~~~~~~~l~~l~i~~~ 861 (886)
++++| +++.+|.... ..|+.+.++++
T Consensus 572 ~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 572 QIGSN-DIRKVNEKIT-PNISVLDIKDN 597 (636)
T ss_dssp ECCSS-CCCBCCSCCC-TTCCEEECCSC
T ss_pred ECCCC-cCCccCHhHh-CcCCEEECcCC
Confidence 88887 4488887644 33777777765
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.5e-21 Score=224.71 Aligned_cols=133 Identities=29% Similarity=0.395 Sum_probs=115.4
Q ss_pred cchhhhhccccceEEcC--CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILS--KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 586 (886)
+++++|++.+|.+..++ ...++++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. ++++.+|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 68999999999987764 3478999999999999999888888999999999999999 77777765 99999999999
Q ss_pred ccCCCccc--cchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCccc
Q 035887 587 LSETSIKE--LPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRK 643 (886)
Q Consensus 587 L~~~~i~~--LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 643 (886)
+++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++.+|.....
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 99999985 4678999999999999999767888865589999999999998876553
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-21 Score=229.87 Aligned_cols=302 Identities=15% Similarity=0.184 Sum_probs=221.6
Q ss_pred cccchhhhhccccceEEcCCC--CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCE
Q 035887 508 KWEDRRKISLMRNKIVILSKP--PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQY 584 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~ 584 (886)
.+.+++.+++.++.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|+|++| .++.+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 345778888888888777653 56889999999999888888877899999999999999 6766654 5689999999
Q ss_pred EeccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcC
Q 035887 585 LNLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELIT 663 (886)
Q Consensus 585 L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (886)
|+|++|.++.+|.. ++++++|++|++++|. +..+|+..++.+++|++|++++|.... . .+..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~------~~~~ 190 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH----------V------DLSL 190 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB----------C------CGGG
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC----------c------Chhh
Confidence 99999999999887 4899999999999986 566666558899999999999887543 0 1455
Q ss_pred CcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCcc
Q 035887 664 LEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTR 743 (886)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~ 743 (886)
+++|+.+++..+.+..+. ...+|+.|+++++. +..++. ...++|+.|+++++. +.. +.+.
T Consensus 191 l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~-l~~~~~---~~~~~L~~L~L~~n~-l~~--~~~l------ 250 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA-------IPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNN-LTD--TAWL------ 250 (597)
T ss_dssp CTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSC-CCEEEC---SCCSCCCEEECCSSC-CCC--CGGG------
T ss_pred hhhhhhhhcccCcccccc-------CCchhheeeccCCc-cccccc---ccCCCCCEEECCCCC-CCC--Chhh------
Confidence 677888877765544322 23578888888774 233321 123678888887763 332 2222
Q ss_pred CCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccccc
Q 035887 744 EPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFR 822 (886)
Q Consensus 744 ~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~ 822 (886)
..+++|+.|+|++|.....+| .++.+++|+.|+|++| .+..++. ....+|+|+.|+|+++ .+..++.
T Consensus 251 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~~ 318 (597)
T 3oja_B 251 --LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHN-HLLHVER 318 (597)
T ss_dssp --GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC--------SSSCCTTCCEEECCSS-CCCCCGG
T ss_pred --ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc--------ccccCCCCcEEECCCC-CCCccCc
Confidence 367889999999885444433 5788899999999887 4555543 4567889999999885 5677776
Q ss_pred CcCCCCCccEEeeccCCCCCCCCCCCCCCCCCceEEEcc
Q 035887 823 NALPFPNLLELFVSECPNLKKLPLDINSAKEGKTVIRGD 861 (886)
Q Consensus 823 ~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~i~~~ 861 (886)
....+++|+.|++++| .+..+|.... ..|+.+.+.++
T Consensus 319 ~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~L~~L~l~~N 355 (597)
T 3oja_B 319 NQPQFDRLENLYLDHN-SIVTLKLSTH-HTLKNLTLSHN 355 (597)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCCCCTT-CCCSEEECCSS
T ss_pred ccccCCCCCEEECCCC-CCCCcChhhc-CCCCEEEeeCC
Confidence 6667889999999987 5777775432 23777777654
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.5e-21 Score=219.54 Aligned_cols=294 Identities=20% Similarity=0.239 Sum_probs=223.4
Q ss_pred ccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEE
Q 035887 509 WEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYL 585 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L 585 (886)
..+++.|++.+|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. ++++.+|++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEE
Confidence 3588999999999987643 478999999999999999887777999999999999999 78888764 7899999999
Q ss_pred eccCCCcccc-chhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCC
Q 035887 586 NLSETSIKEL-PHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITL 664 (886)
Q Consensus 586 ~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 664 (886)
+|++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|++.+|.... .....+.++
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~l~~l 175 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS-------------IPTEALSHL 175 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS-------------CCHHHHTTC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc-------------cChhHhccc
Confidence 9999999977 5569999999999999996 566665558999999999999886543 123447788
Q ss_pred cCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccC
Q 035887 665 EHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTRE 744 (886)
Q Consensus 665 ~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~ 744 (886)
++|+.|.+..+.+..+.. ......++|+.|+++++.....++. ......+|++|+++++ .++.++....
T Consensus 176 ~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~~~~~------- 244 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITHC-NLTAVPYLAV------- 244 (477)
T ss_dssp TTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCSEEEEESS-CCCSCCHHHH-------
T ss_pred CCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCc-ccccCccccEEECcCC-cccccCHHHh-------
Confidence 999999998776544322 1223446899999998876665554 2333458999999876 3443332222
Q ss_pred CCCCCCccEEEeccCCccccCc--ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccccc
Q 035887 745 PYGFNSLQRVTIACCSRLREVT--WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFR 822 (886)
Q Consensus 745 ~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~ 822 (886)
..+++|+.|+|++|. +..++ .+..+++|+.|+|++| .+..+.. ..+..+++|+.|+|+++ .++.++.
T Consensus 245 -~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 245 -RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEP-------YAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp -TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECT-------TTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred -cCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECH-------HHhcCcccCCEEECCCC-cCceeCH
Confidence 257889999999885 34433 4778899999999888 4555533 35667889999999884 6776665
Q ss_pred Cc-CCCCCccEEeeccCC
Q 035887 823 NA-LPFPNLLELFVSECP 839 (886)
Q Consensus 823 ~~-~~~p~L~~L~i~~C~ 839 (886)
.. ..+++|+.|++.++|
T Consensus 314 ~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp GGBSCGGGCCEEECCSSC
T ss_pred hHcCCCcccCEEEccCCC
Confidence 32 457888888888664
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.7e-21 Score=216.85 Aligned_cols=281 Identities=19% Similarity=0.245 Sum_probs=221.3
Q ss_pred cccccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCC
Q 035887 506 VRKWEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSL 582 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L 582 (886)
...+++++.|++.+|.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. ++++.+|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCC
Confidence 3456789999999999877653 478999999999999999999888999999999999999 88899876 4899999
Q ss_pred CEEeccCCCccccch-hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHh
Q 035887 583 QYLNLSETSIKELPH-ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEEL 661 (886)
Q Consensus 583 ~~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 661 (886)
++|++++|.+..+|. .+.++++|++|++++|. +..++ ++.+++|++|++.+|.... +
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l~~------------------~ 201 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLST------------------L 201 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCCSE------------------E
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccccc------------------c
Confidence 999999999998865 59999999999999996 56665 5678999999999876532 2
Q ss_pred cCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccC
Q 035887 662 ITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRT 741 (886)
Q Consensus 662 ~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~ 741 (886)
...++|+.|++..+.+..++. ...++|+.|+++++.. ...+ .+..+++|+.|+++++ .++.+.+....
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l-~~~~--~l~~l~~L~~L~Ls~n-~l~~~~~~~~~--- 269 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNL-TDTA--WLLNYPGLVEVDLSYN-ELEKIMYHPFV--- 269 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCC-CCCG--GGGGCTTCSEEECCSS-CCCEEESGGGT---
T ss_pred CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCC-cccH--HHcCCCCccEEECCCC-cCCCcChhHcc---
Confidence 334567888877665544322 2236899999998853 3332 5778899999999986 45544444332
Q ss_pred ccCCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccc
Q 035887 742 TREPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKII 820 (886)
Q Consensus 742 ~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i 820 (886)
.+++|+.|+|++|. +..++ ..+.+|+|+.|+|++| .+..++. .+..+++|+.|+|+++ .++.+
T Consensus 270 -----~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~N-~i~~~ 333 (390)
T 3o6n_A 270 -----KMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHN-SIVTL 333 (390)
T ss_dssp -----TCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSS-CCCCC
T ss_pred -----ccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCc--------cccccCcCCEEECCCC-cccee
Confidence 58999999999984 45554 4667899999999999 5665543 4567899999999995 47766
Q ss_pred ccCcCCCCCccEEeeccCC
Q 035887 821 FRNALPFPNLLELFVSECP 839 (886)
Q Consensus 821 ~~~~~~~p~L~~L~i~~C~ 839 (886)
+ ...+++|+.|++.+++
T Consensus 334 ~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 334 K--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp C--CCTTCCCSEEECCSSC
T ss_pred C--chhhccCCEEEcCCCC
Confidence 5 4568999999999874
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=9.3e-21 Score=222.29 Aligned_cols=130 Identities=25% Similarity=0.291 Sum_probs=97.5
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~ 586 (886)
+++++|++++|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.+| ..++.+.+|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence 467888888888766543 367888888888888887777777888888888888888 566554 5678888888888
Q ss_pred ccCCCccccch-hhhccCCCcEeecccccccc-ccccccccCCCCCCEEEeccCCCc
Q 035887 587 LSETSIKELPH-ELKALTKLKCLNLEYTRYLQ-KIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 587 L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
+++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++.+|...
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc
Confidence 88888887765 47888888888888875322 35665 777888888888777543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=7.9e-21 Score=220.09 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=96.3
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEec
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNL 587 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 587 (886)
+++++|++++|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. .+.+|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 678888888888766542 367888888888888888776666888888888888888 77788866 7888888888
Q ss_pred cCCCccc--cchhhhccCCCcEeeccccccccccccccccCCCCC--CEEEeccCCC
Q 035887 588 SETSIKE--LPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGL--EVLRMLDCGY 640 (886)
Q Consensus 588 ~~~~i~~--LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 640 (886)
++|.++. +|..++++++|++|++++|. +.. ..++.+++| ++|++.+|..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 8888875 56788888888888888876 333 125667777 8888888766
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=1.6e-21 Score=230.52 Aligned_cols=184 Identities=18% Similarity=0.271 Sum_probs=143.6
Q ss_pred ceEEcCC-CCCCCcceeeeecCccccc------------------cChhhhc--CCCCCcEEEccCCCcccccCccccCc
Q 035887 521 KIVILSK-PPACPRLLTLFLGINRLDT------------------ISSDFFD--FMPSLKVLNLSKNRSLSQLPSGVSKL 579 (886)
Q Consensus 521 ~~~~l~~-~~~~~~Lr~L~l~~~~l~~------------------~~~~~~~--~l~~Lr~L~Ls~~~~i~~lp~~i~~L 579 (886)
.+..+|. ..++++|++|++++|.+.. +|.. +. ++++|++|++++|.....+|..++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4444554 3678999999999999887 7765 56 89999999999996677899999999
Q ss_pred cCCCEEeccCCC-cc--ccchhhhcc------CCCcEeecccccccccccc--ccccCCCCCCEEEeccCCCcccccccc
Q 035887 580 VSLQYLNLSETS-IK--ELPHELKAL------TKLKCLNLEYTRYLQKIPR--QLLCSFSGLEVLRMLDCGYSRKIAEDS 648 (886)
Q Consensus 580 ~~L~~L~L~~~~-i~--~LP~~i~~L------~~L~~L~l~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~ 648 (886)
.+|++|++++|. ++ .+|..+++| ++|++|++++|. +..+|. . ++++++|++|++.+|...+.+|
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip--- 347 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLP--- 347 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECC---
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchh---
Confidence 999999999998 88 599999887 999999999997 568997 5 8999999999999987654332
Q ss_pred cccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccc-cceEEEeecCCCCccccccccc--cCccceEeecc
Q 035887 649 VQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSS-TRALELRRCEDSKSWNILSIAD--LKYLNKLDFAY 725 (886)
Q Consensus 649 ~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~i~~ 725 (886)
.+.++++|+.|.+..+.+..+ +......++ |+.|+++++.. ..++. .+.. +++|+.|++++
T Consensus 348 -----------~~~~l~~L~~L~L~~N~l~~l---p~~l~~l~~~L~~L~Ls~N~l-~~lp~-~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 348 -----------AFGSEIKLASLNLAYNQITEI---PANFCGFTEQVENLSFAHNKL-KYIPN-IFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp -----------CCEEEEEESEEECCSSEEEEC---CTTSEEECTTCCEEECCSSCC-SSCCS-CCCTTCSSCEEEEECCS
T ss_pred -----------hhCCCCCCCEEECCCCccccc---cHhhhhhcccCcEEEccCCcC-cccch-hhhhcccCccCEEECcC
Confidence 467788888888887665533 333333456 99999998863 34543 3333 34788888876
Q ss_pred C
Q 035887 726 C 726 (886)
Q Consensus 726 ~ 726 (886)
+
T Consensus 412 N 412 (636)
T 4eco_A 412 N 412 (636)
T ss_dssp S
T ss_pred C
Confidence 5
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5.2e-21 Score=226.12 Aligned_cols=122 Identities=24% Similarity=0.305 Sum_probs=96.5
Q ss_pred ccccccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccC
Q 035887 505 EVRKWEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVS 581 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~ 581 (886)
....++++++|++.+|.+..++. ..++++|++|++++|.+..+++..|.++++|++|++++| .++.+| ..++++.+
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCC
Confidence 34567789999999988877643 368899999999999888887777889999999999999 676665 67889999
Q ss_pred CCEEeccCCCcc--ccchhhhccCCCcEeeccccccccccccccccCCC
Q 035887 582 LQYLNLSETSIK--ELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFS 628 (886)
Q Consensus 582 L~~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~ 628 (886)
|++|++++|.+. .+|..++++++|++|++++|. +..++...++.++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLR 177 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHH
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhh
Confidence 999999999887 578889999999999999886 4444433243333
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=3.4e-21 Score=231.45 Aligned_cols=187 Identities=18% Similarity=0.247 Sum_probs=148.9
Q ss_pred ccceEEcCC-CCCCCcceeeeecCccccc------------------cChhh-hcCCCCCcEEEccCCCcccccCccccC
Q 035887 519 RNKIVILSK-PPACPRLLTLFLGINRLDT------------------ISSDF-FDFMPSLKVLNLSKNRSLSQLPSGVSK 578 (886)
Q Consensus 519 ~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~------------------~~~~~-~~~l~~Lr~L~Ls~~~~i~~lp~~i~~ 578 (886)
.|.+..+|. ..++++|++|++++|.+.. +|..+ |.++++|++|+|++|.....+|..+++
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 367776765 3789999999999999887 77764 449999999999999667889999999
Q ss_pred ccCCCEEeccCCC-ccc--cchhhhccC-------CCcEeecccccccccccc--ccccCCCCCCEEEeccCCCcccccc
Q 035887 579 LVSLQYLNLSETS-IKE--LPHELKALT-------KLKCLNLEYTRYLQKIPR--QLLCSFSGLEVLRMLDCGYSRKIAE 646 (886)
Q Consensus 579 L~~L~~L~L~~~~-i~~--LP~~i~~L~-------~L~~L~l~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~ 646 (886)
+.+|++|+|++|+ ++. +|..++++. +|++|++++|. +..+|. . ++++++|++|++++|... .+|
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~-l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS-LQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH-HTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh-hhcCCCCCEEECCCCCcc-cch-
Confidence 9999999999997 884 999888887 99999999997 569998 5 899999999999998764 222
Q ss_pred cccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccc-cceEEEeecCCCCcccccccccc--CccceEee
Q 035887 647 DSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSS-TRALELRRCEDSKSWNILSIADL--KYLNKLDF 723 (886)
Q Consensus 647 ~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~i 723 (886)
.+.++++|+.|.+..+.+..+ +......++ |+.|+++++.. ..++. .+..+ ++|+.|++
T Consensus 590 -------------~~~~L~~L~~L~Ls~N~l~~l---p~~l~~l~~~L~~L~Ls~N~L-~~lp~-~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 590 -------------AFGTNVKLTDLKLDYNQIEEI---PEDFCAFTDQVEGLGFSHNKL-KYIPN-IFNAKSVYVMGSVDF 651 (876)
T ss_dssp -------------CCCTTSEESEEECCSSCCSCC---CTTSCEECTTCCEEECCSSCC-CSCCS-CCCTTCSSCEEEEEC
T ss_pred -------------hhcCCCcceEEECcCCccccc---hHHHhhccccCCEEECcCCCC-CcCch-hhhccccCCCCEEEC
Confidence 477889999999987776533 333333456 99999999863 35542 34444 45999999
Q ss_pred ccCC
Q 035887 724 AYCT 727 (886)
Q Consensus 724 ~~~~ 727 (886)
+++.
T Consensus 652 s~N~ 655 (876)
T 4ecn_A 652 SYNK 655 (876)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 8763
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3.6e-21 Score=226.26 Aligned_cols=280 Identities=19% Similarity=0.242 Sum_probs=217.1
Q ss_pred ccccchhhhhccccceEEcC--CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCC
Q 035887 507 RKWEDRRKISLMRNKIVILS--KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQ 583 (886)
Q Consensus 507 ~~~~~~r~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~ 583 (886)
..+++++.|++.+|.+..++ ....+++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. ++++.+|+
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCC
Confidence 45678999999999997765 3478999999999999999999988999999999999999 88888876 58999999
Q ss_pred EEeccCCCccccch-hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhc
Q 035887 584 YLNLSETSIKELPH-ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELI 662 (886)
Q Consensus 584 ~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (886)
+|+|++|.+..+|. .++++++|++|++++|. +..+| ++.+++|++|++.+|.... +.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l~~------------------l~ 208 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLST------------------LA 208 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCCSE------------------EE
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcccc------------------cc
Confidence 99999999998765 59999999999999996 56666 5678999999999876532 33
Q ss_pred CCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCc
Q 035887 663 TLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTT 742 (886)
Q Consensus 663 ~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~ 742 (886)
...+|+.|+++.+.+..+.. ...++|+.|+++++.. ... ..+..+++|+.|+++++. +..+.+....
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l-~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~---- 275 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNL-TDT--AWLLNYPGLVEVDLSYNE-LEKIMYHPFV---- 275 (597)
T ss_dssp CCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSC-CCEEESGGGT----
T ss_pred CCchhheeeccCCccccccc-----ccCCCCCEEECCCCCC-CCC--hhhccCCCCCEEECCCCc-cCCCCHHHhc----
Confidence 44567777777665543322 1235789999988753 332 257788899999998764 5544443332
Q ss_pred cCCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccc
Q 035887 743 REPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIF 821 (886)
Q Consensus 743 ~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~ 821 (886)
.+++|+.|+|++|. +..+| ..+.+|+|+.|+|++| .+..++. .+..+++|+.|+|+++ .+..++
T Consensus 276 ----~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~--------~~~~l~~L~~L~L~~N-~l~~~~ 340 (597)
T 3oja_B 276 ----KMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHN-SIVTLK 340 (597)
T ss_dssp ----TCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSS-CCCCCC
T ss_pred ----CccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCC-CCCccCc--------ccccCCCCCEEECCCC-CCCCcC
Confidence 57899999999984 44454 4567899999999988 4555543 4567899999999885 466554
Q ss_pred cCcCCCCCccEEeeccCC
Q 035887 822 RNALPFPNLLELFVSECP 839 (886)
Q Consensus 822 ~~~~~~p~L~~L~i~~C~ 839 (886)
...+++|+.|+++++|
T Consensus 341 --~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --CCTTCCCSEEECCSSC
T ss_pred --hhhcCCCCEEEeeCCC
Confidence 4568899999998875
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=4.9e-20 Score=215.35 Aligned_cols=124 Identities=27% Similarity=0.373 Sum_probs=72.4
Q ss_pred cchhhhhccccceEEcC--CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEec
Q 035887 510 EDRRKISLMRNKIVILS--KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNL 587 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 587 (886)
+++++|++.+|.+..++ ...++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. .+.+|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 45666666666665543 2355666666666666666665555666666666666666 55666654 5666666666
Q ss_pred cCCCccccc--hhhhccCCCcEeeccccccccccccccccCCCCC--CEEEeccCCC
Q 035887 588 SETSIKELP--HELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGL--EVLRMLDCGY 640 (886)
Q Consensus 588 ~~~~i~~LP--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 640 (886)
++|.+..+| ..++++++|++|++++|. +...+ +..+++| ++|++.+|..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 666666543 456666666666666654 22211 3334444 6666666554
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.4e-21 Score=207.05 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=203.0
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSE 589 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~ 589 (886)
+++.+.+.++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++| .++.+ |..++++.+|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence 6788888888877776533 478999999999998888877899999999999999 67665 77899999999999999
Q ss_pred CCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 590 TSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
|.++.+|..+. ++|++|++++|. +..+|...++.+++|++|++.+|.... .......+..+ +|+.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN-----------SGFEPGAFDGL-KLNY 176 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG-----------GGSCTTSSCSC-CCSC
T ss_pred CcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc-----------CCCCcccccCC-ccCE
Confidence 99999998876 899999999996 678887778999999999999887642 00112224444 6666
Q ss_pred EEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCC
Q 035887 670 LSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFN 749 (886)
Q Consensus 670 L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (886)
|++..+.+..++. ...++|+.|+++++. +...+...+..+++|+.|+++++ .++.+..... ..++
T Consensus 177 L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~--------~~l~ 241 (332)
T 2ft3_A 177 LRISEAKLTGIPK-----DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSL--------SFLP 241 (332)
T ss_dssp CBCCSSBCSSCCS-----SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGG--------GGCT
T ss_pred EECcCCCCCccCc-----cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhHh--------hCCC
Confidence 6666555444322 122578888888774 33333335677888888888875 3443333222 2578
Q ss_pred CccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccccc---CcC
Q 035887 750 SLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFR---NAL 825 (886)
Q Consensus 750 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~---~~~ 825 (886)
+|+.|+|++|. +..+| .+..+++|+.|++++| .++.+....+... .....+++|+.|.+.+++ +..+.. ...
T Consensus 242 ~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~ 317 (332)
T 2ft3_A 242 TLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV-GFGVKRAYYNGISLFNNP-VPYWEVQPATFR 317 (332)
T ss_dssp TCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS-SCCSSSCCBSEEECCSSS-SCGGGSCGGGGT
T ss_pred CCCEEECCCCc-CeecChhhhcCccCCEEECCCC-CCCccChhHcccc-ccccccccccceEeecCc-ccccccCccccc
Confidence 88888888884 44555 5788888888888887 5666544222111 111236788888888865 332222 233
Q ss_pred CCCCccEEeeccCC
Q 035887 826 PFPNLLELFVSECP 839 (886)
Q Consensus 826 ~~p~L~~L~i~~C~ 839 (886)
.+++|+.|++.++.
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 46677777777664
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=3.7e-20 Score=226.54 Aligned_cols=321 Identities=17% Similarity=0.158 Sum_probs=198.0
Q ss_pred cEEEEcCcccCCCcccccccchhhhhccccceEEcC--CCCCCCcceeeeecCc-cccccChhhhcCCCCCcEEEccCCC
Q 035887 491 NFLVSAGVELTKPPEVRKWEDRRKISLMRNKIVILS--KPPACPRLLTLFLGIN-RLDTISSDFFDFMPSLKVLNLSKNR 567 (886)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~-~l~~~~~~~~~~l~~Lr~L~Ls~~~ 567 (886)
..+...+.+...+|. ..+++++|++++|.+..+. ...++++|++|++++| ....+++..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 344455556666665 5578999999999887653 3478999999999999 455676777899999999999999
Q ss_pred ccccc-CccccCccCCCEEeccCCCccc-cchh--hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCccc
Q 035887 568 SLSQL-PSGVSKLVSLQYLNLSETSIKE-LPHE--LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRK 643 (886)
Q Consensus 568 ~i~~l-p~~i~~L~~L~~L~L~~~~i~~-LP~~--i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 643 (886)
.+..+ |..++++.+|++|+|++|.+.. +|.. +++|++|++|++++|......|...++++++|++|++.+|.....
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 66654 8899999999999999998885 5665 899999999999999743333333489999999999998876541
Q ss_pred ccccccccCCccchHHHhcCCcCCceEEEEeccchhhhh-----hhcccccccccceEEEeecCCCCcccc---------
Q 035887 644 IAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQR-----LLSCQQLHSSTRALELRRCEDSKSWNI--------- 709 (886)
Q Consensus 644 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~--------- 709 (886)
. ...+..+.. ++|+.|.+..+....... ...... ...|+.|+++++......+.
T Consensus 164 ~----------~~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 164 C----------EHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFR-NMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp C----------SGGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTT-TCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred C----------HHHcccccC-CccceEECCCCccccccccchhhcCCccc-cCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 1 112222321 677777777655432110 000000 12488888887732111110
Q ss_pred --------------------------ccccc--cCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCc
Q 035887 710 --------------------------LSIAD--LKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSR 761 (886)
Q Consensus 710 --------------------------~~l~~--l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 761 (886)
..+.. .++|+.|+++++. +..+.+.. ...+++|+.|+|++|..
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~--------~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRV--------FETLKDLKVLNLAYNKI 302 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCC--------SSSCCCCCEEEEESCCC
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhh--------hhcCCCCCEEECCCCcC
Confidence 00111 1456666665532 22221111 12466777777776643
Q ss_pred cccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccC-cCCCCCccEEeeccCC
Q 035887 762 LREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRN-ALPFPNLLELFVSECP 839 (886)
Q Consensus 762 l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 839 (886)
....+ .++.+++|+.|+|++| .++.+.. ..+..+++|+.|+|+++ .+..++.. ...+++|+.|++++|
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N- 372 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYN-LLGELYS-------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN- 372 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESC-CCSCCCS-------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-
T ss_pred CCCChHHhcCCCCCCEEECCCC-CCCccCH-------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-
Confidence 33222 3566677777777766 3333322 24555666666666663 34444332 234566666666654
Q ss_pred CCCCCC
Q 035887 840 NLKKLP 845 (886)
Q Consensus 840 ~L~~lp 845 (886)
.++.+|
T Consensus 373 ~l~~i~ 378 (844)
T 3j0a_A 373 ALTTIH 378 (844)
T ss_dssp CSCCCS
T ss_pred CCCccc
Confidence 344444
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2e-20 Score=221.01 Aligned_cols=130 Identities=19% Similarity=0.126 Sum_probs=84.6
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc-cCccccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ-LPSGVSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~~L~~L~~L~ 586 (886)
..+++|++++|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .+.. .|..++++.+|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEee
Confidence 366777777777765532 356777777777777776666666777777777777777 4443 356677777777777
Q ss_pred ccCCCcccc-chhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 587 LSETSIKEL-PHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 587 L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
+++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++.+|...
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc
Confidence 777777766 4557777777777777765 34432111334667777777666543
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=216.56 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=79.7
Q ss_pred hhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCC
Q 035887 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETS 591 (886)
Q Consensus 513 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 591 (886)
+++++++|.+..+|.... ++|++|++++|.+..+++..|.++++|++|+|++| .++.+ |..++++.+|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 345566666655554322 67777777777776666666677777777777777 55544 5567777777777777777
Q ss_pred ccccchhhhccCCCcEeecccccccc-ccccccccCCCCCCEEEeccCCCc
Q 035887 592 IKELPHELKALTKLKCLNLEYTRYLQ-KIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 592 i~~LP~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
++++|.. .+++|++|++++|.... .+|.. ++++++|++|++.+|...
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc
Confidence 7777665 67777777777775322 24444 667777777777766543
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=3.6e-21 Score=232.95 Aligned_cols=132 Identities=27% Similarity=0.331 Sum_probs=82.1
Q ss_pred ccccchhhhhccccceEE-cCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEE
Q 035887 507 RKWEDRRKISLMRNKIVI-LSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYL 585 (886)
Q Consensus 507 ~~~~~~r~l~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 585 (886)
..+.++++|++.+|.+.. ++...++++|++|++++|.+....+..+..+++|++|++++|.....+|.. .+.+|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 455677777777776644 344566777888888777776555555777777777777777322233322 56666666
Q ss_pred eccCCCcc-ccchhhhcc-CCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 586 NLSETSIK-ELPHELKAL-TKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 586 ~L~~~~i~-~LP~~i~~L-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++.+++|++|++.+|...
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS 331 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc
Confidence 66666655 566665553 66666666666543345544 566666666666665543
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.1e-20 Score=223.39 Aligned_cols=261 Identities=18% Similarity=0.196 Sum_probs=127.6
Q ss_pred ccCccCCCEEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCcc
Q 035887 576 VSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSE 655 (886)
Q Consensus 576 i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 655 (886)
++.+.+|++|++++|.++++|..+..+++|++|++++|. +..++...++.+++|++|++.+|.....++.
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------- 343 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGT--------- 343 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCS---------
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccch---------
Confidence 455566666666666666666666666666666666664 3334333355666666666665544322211
Q ss_pred chHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCC--------
Q 035887 656 ILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCT-------- 727 (886)
Q Consensus 656 ~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~-------- 727 (886)
..+.++++|+.|++..+........+......++|+.|+++++.. .......+..+++|+.|+++++.
T Consensus 344 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 344 ---GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp ---STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-EEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ---hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-CcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 114445555555555444332221111222234555555555432 12211234445555555554321
Q ss_pred ------CcceEEeccccccCc--cCCCCCCCccEEEeccCCcccc----CcccccCCCCcEEEEecCccchhhccccccC
Q 035887 728 ------SLEVLRVNYAEVRTT--REPYGFNSLQRVTIACCSRLRE----VTWLVFAPNLKIVHIESCYDMDEIISAWKLG 795 (886)
Q Consensus 728 ------~l~~l~~~~~~~~~~--~~~~~~~~L~~L~L~~c~~l~~----l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~ 795 (886)
.++.+.++....... .....+++|+.|+|++|..... ...++.+++|+.|+|++| .++.++.
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~----- 493 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ----- 493 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-----
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh-----
Confidence 111111111111110 0112456666666666643221 123566666777777666 3443332
Q ss_pred CCCCCCCCCcccEEecccccccccc-ccCcCCCCCccEEeeccCCCCCCCCCC-CCC-CCCCceEEEcc
Q 035887 796 EVPGLNPFAKLQYLRLQVLTKLKII-FRNALPFPNLLELFVSECPNLKKLPLD-INS-AKEGKTVIRGD 861 (886)
Q Consensus 796 ~~~~~~~fp~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~-~~l~~l~i~~~ 861 (886)
..+..+++|+.|+|+++. ++.+ +.....+++| .|++++| +++.+|.. ... ..++.+.+.++
T Consensus 494 --~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 494 --HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp --TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred --hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCC
Confidence 245667778888877753 4433 3344456777 7777776 45555432 121 22666666543
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.3e-20 Score=201.35 Aligned_cols=293 Identities=17% Similarity=0.159 Sum_probs=209.2
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSE 589 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~ 589 (886)
+++.+++.++.+..+|.. -.+++++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+.+|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence 677788888877777653 2478999999999999998877999999999999999 67666 88899999999999999
Q ss_pred CCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 590 TSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
|.++++|..+. ++|++|++++|. +..++...++++++|++|++.+|.... .......+.++++|+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTCCE
T ss_pred CcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-----------cCcChhhccCCCCcCE
Confidence 99999998775 799999999996 677777768999999999999887532 1112344677888888
Q ss_pred EEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCC
Q 035887 670 LSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFN 749 (886)
Q Consensus 670 L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (886)
|.+..+.+..++. ...++|+.|+++++. +...+...+..+++|+.|+++++. ++.+..... ..++
T Consensus 176 L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--------~~l~ 240 (330)
T 1xku_A 176 IRIADTNITTIPQ-----GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSL--------ANTP 240 (330)
T ss_dssp EECCSSCCCSCCS-----SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTTTG--------GGST
T ss_pred EECCCCccccCCc-----cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChhhc--------cCCC
Confidence 8887666554332 122688888888875 344433467778888888888753 444433222 2578
Q ss_pred CccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccC---cC
Q 035887 750 SLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRN---AL 825 (886)
Q Consensus 750 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~---~~ 825 (886)
+|+.|+|++|. +..+| ++..+++|+.|++++| .++.+....+... .....+++|+.|.+.+.+ +..+... ..
T Consensus 241 ~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~-~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~ 316 (330)
T 1xku_A 241 HLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP-GYNTKKASYSGVSLFSNP-VQYWEIQPSTFR 316 (330)
T ss_dssp TCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS-SCCTTSCCCSEEECCSSS-SCGGGSCGGGGT
T ss_pred CCCEEECCCCc-CccCChhhccCCCcCEEECCCC-cCCccChhhcCCc-ccccccccccceEeecCc-ccccccCccccc
Confidence 88899998884 44554 6788888999988888 5666654332211 122346788888888855 4433322 22
Q ss_pred CCCCccEEeeccC
Q 035887 826 PFPNLLELFVSEC 838 (886)
Q Consensus 826 ~~p~L~~L~i~~C 838 (886)
.+++|+.+++.++
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 3556667776654
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=8.1e-21 Score=214.70 Aligned_cols=225 Identities=17% Similarity=0.173 Sum_probs=146.9
Q ss_pred ccccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCE
Q 035887 505 EVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQY 584 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 584 (886)
....++++++|++.+|.+..+|....+++|++|++++|.+..++ +..+++|++|++++| .++.+| ++++.+|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 34456678888888888777776677888888888888877764 677888888888888 677765 788888888
Q ss_pred EeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCC
Q 035887 585 LNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITL 664 (886)
Q Consensus 585 L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 664 (886)
|++++|.++.+| ++++++|++|++++|. +..+| ++.+++|++|++.+|...+.+ .+..+
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~~---------------~~~~l 169 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITKL---------------DVTPQ 169 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCCC---------------CCTTC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccccc---------------ccccC
Confidence 888888888876 7888888888888886 56564 677888888888877544311 25566
Q ss_pred cCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccC
Q 035887 665 EHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTRE 744 (886)
Q Consensus 665 ~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~ 744 (886)
++|+.|++..+.+..++ ....++|+.|+++++. +..+ .+..+++|+.|+++++. ++.++
T Consensus 170 ~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~-l~~~---~l~~l~~L~~L~Ls~N~-l~~ip----------- 228 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNN-ITKL---DLNQNIQLTFLDCSSNK-LTEID----------- 228 (457)
T ss_dssp TTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSC-CSCC---CCTTCTTCSEEECCSSC-CSCCC-----------
T ss_pred CcCCEEECCCCccceec-----cccCCCCCEEECcCCc-CCee---ccccCCCCCEEECcCCc-ccccC-----------
Confidence 77777777666554432 1223567777776654 2222 34556667777766542 33221
Q ss_pred CCCCCCccEEEeccCCccccCcccccCCCCcEEEE
Q 035887 745 PYGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHI 779 (886)
Q Consensus 745 ~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L 779 (886)
...+++|+.|++++| .+..++ ++.+++|+.|++
T Consensus 229 ~~~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l 261 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHC 261 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEEC
T ss_pred ccccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEec
Confidence 123556666666655 233332 334444444433
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=9.3e-20 Score=222.96 Aligned_cols=311 Identities=20% Similarity=0.217 Sum_probs=213.7
Q ss_pred cccccccchhhhhccccc-eEEc-C-CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc-cCcc--cc
Q 035887 504 PEVRKWEDRRKISLMRNK-IVIL-S-KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ-LPSG--VS 577 (886)
Q Consensus 504 ~~~~~~~~~r~l~l~~~~-~~~l-~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~--i~ 577 (886)
.....+++++.|++.+|. ...+ + ...++++|++|++++|.+..+++..|.++++|++|+|++| .++. .|.. ++
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFR 120 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCcccc
Confidence 345677899999999984 3344 2 3478999999999999999887777999999999999999 6654 5655 89
Q ss_pred CccCCCEEeccCCCccccc--hhhhccCCCcEeeccccccccccccccccCC--CCCCEEEeccCCCcccccccccccCC
Q 035887 578 KLVSLQYLNLSETSIKELP--HELKALTKLKCLNLEYTRYLQKIPRQLLCSF--SGLEVLRMLDCGYSRKIAEDSVQFGG 653 (886)
Q Consensus 578 ~L~~L~~L~L~~~~i~~LP--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~ 653 (886)
++.+|++|+|++|.+..++ ..+++|++|++|++++|......|.. +..+ ++|+.|++..|......+..+...
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~-- 197 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKC-- 197 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSS--
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCccccccccchhhc--
Confidence 9999999999999998763 57999999999999999744444443 6666 899999999987765333221100
Q ss_pred ccchHHHhcCCcCCceEEEEeccchh--hhhhh--------------------------------ccc--ccccccceEE
Q 035887 654 SEILVEELITLEHLNVLSVTLKSFGA--LQRLL--------------------------------SCQ--QLHSSTRALE 697 (886)
Q Consensus 654 ~~~~~~~l~~L~~L~~L~~~~~~~~~--~~~l~--------------------------------~~~--~~~~~L~~L~ 697 (886)
...+.++ .|+.|+++.+.... ...+. ... -..++|+.|+
T Consensus 198 ----~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 198 ----MNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp ----SCTTTTC-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred ----CCccccC-ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 0001111 24555544332110 00000 000 0125788899
Q ss_pred EeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc-ccccCCCCcE
Q 035887 698 LRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKI 776 (886)
Q Consensus 698 l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~ 776 (886)
++++.. .......+..+++|+.|+++++ .+..+.+... ..+++|+.|+|++|......+ .++.+++|+.
T Consensus 273 Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 273 LSHGFV-FSLNSRVFETLKDLKVLNLAYN-KINKIADEAF--------YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp CTTCCC-CEECSCCSSSCCCCCEEEEESC-CCCEECTTTT--------TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred CCCCcc-cccChhhhhcCCCCCEEECCCC-cCCCCChHHh--------cCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 888753 3333336778899999999875 3444433222 367899999999985433333 5888999999
Q ss_pred EEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCC
Q 035887 777 VHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLD 847 (886)
Q Consensus 777 L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 847 (886)
|++++| .+..+.. ..+..+++|+.|+|+++ .++.++. +|+|+.|.+.++ +++.+|..
T Consensus 343 L~L~~N-~i~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N-~l~~l~~~ 399 (844)
T 3j0a_A 343 IDLQKN-HIAIIQD-------QTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGN-KLVTLPKI 399 (844)
T ss_dssp EECCSC-CCCCCCS-------SCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEEESC-CCCCCCCC
T ss_pred EECCCC-CCCccCh-------hhhcCCCCCCEEECCCC-CCCcccC----CCCcchhccCCC-Cccccccc
Confidence 999988 5555543 35677899999999884 4665442 788888888876 55566543
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=221.36 Aligned_cols=344 Identities=17% Similarity=0.163 Sum_probs=224.8
Q ss_pred cccccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCC
Q 035887 506 VRKWEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSL 582 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L 582 (886)
...++++++|++.+|.+..++. ..++++|++|++++|.+..+++..|.++++|++|++++| .++.+|. .++++.+|
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccc
Confidence 4556789999999998877653 367899999999999988888878999999999999999 7887775 68999999
Q ss_pred CEEeccCCCccc--cchhhhccCCCcEeeccccccccccccccccCCCCC----CEEEeccCCCcccccccccc------
Q 035887 583 QYLNLSETSIKE--LPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGL----EVLRMLDCGYSRKIAEDSVQ------ 650 (886)
Q Consensus 583 ~~L~L~~~~i~~--LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L----~~L~l~~~~~~~~~~~~~~~------ 650 (886)
++|++++|.++. +|..++++++|++|++++|. +..++...++.+++| ++|++.+|......+.....
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 999999998885 78999999999999999986 455554446666666 66666665433211100000
Q ss_pred ----------------------------------------c----------------------CCccchHHHhcCCcCCc
Q 035887 651 ----------------------------------------F----------------------GGSEILVEELITLEHLN 668 (886)
Q Consensus 651 ----------------------------------------~----------------------~~~~~~~~~l~~L~~L~ 668 (886)
. .........+..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 0 00000112233445555
Q ss_pred eEEEEeccchhhhhh-------------------hcc--------------------cccccccceEEEeecCCCCccc-
Q 035887 669 VLSVTLKSFGALQRL-------------------LSC--------------------QQLHSSTRALELRRCEDSKSWN- 708 (886)
Q Consensus 669 ~L~~~~~~~~~~~~l-------------------~~~--------------------~~~~~~L~~L~l~~~~~~~~~~- 708 (886)
.+++..+....++.. +.. ....++|+.|+++++.. ....
T Consensus 286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~ 364 (570)
T 2z63_A 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL-SFKGC 364 (570)
T ss_dssp EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC-BEEEE
T ss_pred EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc-Ccccc
Confidence 555543332221110 000 02235677777776642 2221
Q ss_pred -cccccccCccceEeeccC------------CCcceEEeccccccCcc---CCCCCCCccEEEeccCCccccCc-ccccC
Q 035887 709 -ILSIADLKYLNKLDFAYC------------TSLEVLRVNYAEVRTTR---EPYGFNSLQRVTIACCSRLREVT-WLVFA 771 (886)
Q Consensus 709 -~~~l~~l~~L~~L~i~~~------------~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~L~~c~~l~~l~-~l~~l 771 (886)
...+..+++|++|+++++ +.++.+.+........+ ....+++|+.|++++|.....++ .+..+
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 124556788888887764 34444444433322221 23467889999998886554444 57788
Q ss_pred CCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccc-ccCcCCCCCccEEeeccCCCCCCCCCC-CC
Q 035887 772 PNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKII-FRNALPFPNLLELFVSECPNLKKLPLD-IN 849 (886)
Q Consensus 772 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~ 849 (886)
++|+.|+|++|.......+ ..+..+++|+.|+|++| .++.+ +.....+++|++|++++| +++.+|.. ..
T Consensus 445 ~~L~~L~l~~n~l~~~~~p-------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 515 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFD 515 (570)
T ss_dssp TTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred CcCcEEECcCCcCccccch-------hhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhh
Confidence 9999999998853322222 36778999999999996 45655 445567899999999998 78887653 23
Q ss_pred CCC-CCceEEEcc
Q 035887 850 SAK-EGKTVIRGD 861 (886)
Q Consensus 850 ~~~-l~~l~i~~~ 861 (886)
..+ |+.+.++++
T Consensus 516 ~l~~L~~L~l~~N 528 (570)
T 2z63_A 516 RLTSLQKIWLHTN 528 (570)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCcEEEecCC
Confidence 333 888887753
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=4e-20 Score=215.76 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=107.8
Q ss_pred ccccccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc--cCccccCcc
Q 035887 505 EVRKWEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ--LPSGVSKLV 580 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~--lp~~i~~L~ 580 (886)
....++++++|++.+|.+..++. ...+++|++|++++|.+..+++..|.++++|++|++++| .++. .|..++++.
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 34567799999999999877653 478899999999999999999988999999999999999 6764 467899999
Q ss_pred CCCEEeccCCC-ccccc-hhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCC
Q 035887 581 SLQYLNLSETS-IKELP-HELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 581 ~L~~L~L~~~~-i~~LP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
+|++|++++|. +..+| ..+.++++|++|++++|......|.. ++.+++|++|++..+.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 99999999997 77887 46999999999999998754445544 6666666666555443
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=3.3e-20 Score=211.09 Aligned_cols=310 Identities=15% Similarity=0.210 Sum_probs=215.7
Q ss_pred ccccccchhhhhccccceE-EcC--CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc-cCcc--ccC
Q 035887 505 EVRKWEDRRKISLMRNKIV-ILS--KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ-LPSG--VSK 578 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~-~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~--i~~ 578 (886)
....++++++|++.+|.+. .++ ....+++|++|++++|.+..+++..|.++++|++|++++| .++. .|.. ++.
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKP 127 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTT
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCcccccC
Confidence 3456778999999988763 333 2477899999999999888887777899999999999999 6653 4544 888
Q ss_pred ccCCCEEeccCCCcccc-chh-hhccCCCcEeeccccccccccccccccCC-----------------------------
Q 035887 579 LVSLQYLNLSETSIKEL-PHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSF----------------------------- 627 (886)
Q Consensus 579 L~~L~~L~L~~~~i~~L-P~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l----------------------------- 627 (886)
+.+|++|++++|.+..+ |.. +.++++|++|++++|.. ..++...+..+
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 99999999999999877 555 88999999999999874 44433224333
Q ss_pred -----CCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchh----------hhhhhcccccccc
Q 035887 628 -----SGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGA----------LQRLLSCQQLHSS 692 (886)
Q Consensus 628 -----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~----------~~~l~~~~~~~~~ 692 (886)
++|++|++++|......+ ..+......++|+.+.+..+.... ...........++
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMA----------KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHH----------HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred cccccceeeeEecCCCcccccch----------hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 556666666665443211 122223334666666655332111 0000000011258
Q ss_pred cceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc-ccccC
Q 035887 693 TRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLVFA 771 (886)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l 771 (886)
|+.|+++++... ......+..+++|+.|+++++. +..+.+... ..+++|+.|+|++|......+ .++.+
T Consensus 277 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 277 VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF--------WGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp CCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSC-CCEECTTTT--------TTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred ceEEEecCcccc-ccchhhcccCCCCCEEECCCCc-ccccChhHh--------cCcccCCEEECCCCccCCcChhHhcCc
Confidence 999999988643 3333367888999999998864 554433332 268999999999995433333 57899
Q ss_pred CCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCc-CCCCCccEEeeccCCCCCCCC
Q 035887 772 PNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNA-LPFPNLLELFVSECPNLKKLP 845 (886)
Q Consensus 772 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp 845 (886)
++|+.|+|++| .++.+.. ..+..+++|++|+|++ ..++.++... ..+++|+.|++.+++---..|
T Consensus 347 ~~L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 347 DKLEVLDLSYN-HIRALGD-------QSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSS-CCCEECT-------TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCEEECCCC-cccccCh-------hhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999 4565543 3677899999999999 4688777643 568999999999886554455
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.8e-20 Score=201.08 Aligned_cols=106 Identities=23% Similarity=0.373 Sum_probs=78.5
Q ss_pred CCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeec
Q 035887 531 CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNL 610 (886)
Q Consensus 531 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l 610 (886)
..+++.|++.+|.+..+|.. +..+++|++|+|++| .++.+|..++++.+|++|+|++|.++.+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 45678888888877777766 455888888888888 6778888888888888888888888888888888888888888
Q ss_pred cccccccccccccccC---------CCCCCEEEeccCC
Q 035887 611 EYTRYLQKIPRQLLCS---------FSGLEVLRMLDCG 639 (886)
Q Consensus 611 ~~~~~l~~lp~~~i~~---------l~~L~~L~l~~~~ 639 (886)
++|+.+..+|.. ++. +++|++|++.+|.
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTG 194 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEEC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCC
Confidence 887777777765 332 5555555555443
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.8e-20 Score=225.18 Aligned_cols=110 Identities=12% Similarity=-0.048 Sum_probs=78.3
Q ss_pred CCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcC
Q 035887 747 GFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNAL 825 (886)
Q Consensus 747 ~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~ 825 (886)
.+++|+.|+|++|.....+| .++.+++|+.|+|++|..-..++. .++.+++|+.|+|+++.--..+|....
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--------~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--------EVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh--------HHhCCCCCCEEECCCCcccCcCChHHh
Confidence 45788899999886655665 688899999999998854444443 667889999999998654446777777
Q ss_pred CCCCccEEeeccCCCCCCCCCCCCCCCCCceEEEccccc
Q 035887 826 PFPNLLELFVSECPNLKKLPLDINSAKEGKTVIRGDQHW 864 (886)
Q Consensus 826 ~~p~L~~L~i~~C~~L~~lp~~~~~~~l~~l~i~~~~~~ 864 (886)
.+++|+.|++++|+--..+|...+..++....+.|++..
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 788999999999865566887655433444434444433
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=7.1e-20 Score=206.96 Aligned_cols=299 Identities=18% Similarity=0.144 Sum_probs=210.5
Q ss_pred CcccCCCcccccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccc
Q 035887 497 GVELTKPPEVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV 576 (886)
Q Consensus 497 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i 576 (886)
+......+....++++++|++.+|.+..++ ...+++|++|++++|.+..++ +..+++|++|++++| .++.+| +
T Consensus 51 ~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~ 123 (457)
T 3bz5_A 51 NSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--V 123 (457)
T ss_dssp SSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--C
T ss_pred CCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--C
Confidence 333444455667789999999999988775 778999999999999988875 788999999999999 788886 8
Q ss_pred cCccCCCEEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccc
Q 035887 577 SKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEI 656 (886)
Q Consensus 577 ~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 656 (886)
+.+.+|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++.+|.... +
T Consensus 124 ~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-l------------ 185 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-L------------ 185 (457)
T ss_dssp TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-C------------
T ss_pred CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-e------------
Confidence 99999999999999999985 8899999999999997677774 7789999999999887543 1
Q ss_pred hHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEecc
Q 035887 657 LVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNY 736 (886)
Q Consensus 657 ~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~ 736 (886)
.+..+++|+.|.+..+.+..++ ....++|+.|+++++. +..++ +..+++|+.|+++++ .++.+++..
T Consensus 186 ---~l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N-~l~~~~~~~ 252 (457)
T 3bz5_A 186 ---DVSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNK-LTEID---VTPLTQLTYFDCSVN-PLTELDVST 252 (457)
T ss_dssp ---CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSS-CCSCCCCTT
T ss_pred ---ccccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCc-ccccC---ccccCCCCEEEeeCC-cCCCcCHHH
Confidence 1667788888888877665542 2334688999998875 33343 567788999988875 344332111
Q ss_pred ccccCccCCCCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccc
Q 035887 737 AEVRTTREPYGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTK 816 (886)
Q Consensus 737 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~ 816 (886)
...-. .-.....+|+.|++++|.....+| .+.+++|+.|++++|..++.++.....-..-.+..+|+|+.|++++ ..
T Consensus 253 l~~L~-~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~ 329 (457)
T 3bz5_A 253 LSKLT-TLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TE 329 (457)
T ss_dssp CTTCC-EEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CC
T ss_pred CCCCC-EEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Cc
Confidence 00000 000011245556666665555454 5678899999999987776665311100001345567777777766 34
Q ss_pred ccccccCcCCCCCccEEeeccC
Q 035887 817 LKIIFRNALPFPNLLELFVSEC 838 (886)
Q Consensus 817 L~~i~~~~~~~p~L~~L~i~~C 838 (886)
++.++ ...+++|+.|+++++
T Consensus 330 l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 330 LTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSS
T ss_pred ccccc--cccCCcCcEEECCCC
Confidence 55543 455788888877653
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=5.9e-20 Score=198.49 Aligned_cols=89 Identities=24% Similarity=0.415 Sum_probs=81.0
Q ss_pred CCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEE
Q 035887 554 FMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVL 633 (886)
Q Consensus 554 ~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 633 (886)
....+++|+|+++ .++.+|..++++.+|++|+|++|.++.+|..++++++|++|++++|. +..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEE
Confidence 3578999999999 89999999999999999999999999999999999999999999997 5689987 8999999999
Q ss_pred EeccCCCccccc
Q 035887 634 RMLDCGYSRKIA 645 (886)
Q Consensus 634 ~l~~~~~~~~~~ 645 (886)
++.+|...+.+|
T Consensus 156 ~L~~n~~~~~~p 167 (328)
T 4fcg_A 156 SIRACPELTELP 167 (328)
T ss_dssp EEEEETTCCCCC
T ss_pred ECCCCCCccccC
Confidence 999987766444
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2.6e-19 Score=214.53 Aligned_cols=146 Identities=23% Similarity=0.280 Sum_probs=118.4
Q ss_pred EEcCcccCCCcccccccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc
Q 035887 494 VSAGVELTKPPEVRKWEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ 571 (886)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~ 571 (886)
...+.....+|.. ...++++|++.+|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.
T Consensus 10 ~cs~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 87 (680)
T 1ziw_A 10 DCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQ 87 (680)
T ss_dssp ECCSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCC
T ss_pred ECCCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCc
Confidence 3334444444432 23689999999998877654 467899999999999998888888999999999999999 7888
Q ss_pred cCc-cccCccCCCEEeccCCCccccc-hhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcc
Q 035887 572 LPS-GVSKLVSLQYLNLSETSIKELP-HELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 572 lp~-~i~~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
+|. .++++.+|++|++++|.+..+| ..++++++|++|++++|. +..++.+.++++++|++|++.+|....
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccc
Confidence 886 5999999999999999999887 469999999999999997 455554458899999999999886543
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=3.9e-19 Score=212.96 Aligned_cols=275 Identities=21% Similarity=0.237 Sum_probs=178.7
Q ss_pred hhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCc
Q 035887 514 KISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSI 592 (886)
Q Consensus 514 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i 592 (886)
.++.+++.+..+|... .+++++|++++|.+..+++..|.++++|++|+|++| .++.+ |..++++.+|++|++++|.+
T Consensus 8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred eeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCcc
Confidence 3455566666666432 379999999999999999888999999999999999 56554 67789999999999999999
Q ss_pred cccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEE
Q 035887 593 KELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLS 671 (886)
Q Consensus 593 ~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (886)
+.+|.. ++++++|++|++++|. +..+|...++++++|++|++.+|..... ....+.++++|+.|.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSST-------------KLGTQVQLENLQELL 151 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCC-------------CCCSSSCCTTCCEEE
T ss_pred CccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCccccc-------------CchhhcccccCCEEE
Confidence 999984 9999999999999996 5778766689999999999999876541 112356788889888
Q ss_pred EEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccC----------------CCcceEEec
Q 035887 672 VTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYC----------------TSLEVLRVN 735 (886)
Q Consensus 672 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~----------------~~l~~l~~~ 735 (886)
+..+.+.............++|+.|+++++.. ...+...+..+.+|+.|++.++ ..++.+.+.
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcc-cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 87665543322111111125788888887742 3332223444455555544332 233333333
Q ss_pred cccccCcc--CCCCC--CCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEe
Q 035887 736 YAEVRTTR--EPYGF--NSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLR 810 (886)
Q Consensus 736 ~~~~~~~~--~~~~~--~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~ 810 (886)
........ ....+ ++|+.|+|++|......+ .++.+++|+.|++++| .+..++. ..+..+++|+.|+
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFS-------HSLHGLFNVRYLN 302 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECT-------TTTTTCTTCCEEE
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCccCh-------hhhcCCCCccEEe
Confidence 22211110 00112 347777777764333222 4666777777777766 3333322 2344455555555
Q ss_pred ccc
Q 035887 811 LQV 813 (886)
Q Consensus 811 L~~ 813 (886)
+++
T Consensus 303 L~~ 305 (680)
T 1ziw_A 303 LKR 305 (680)
T ss_dssp CTT
T ss_pred ccc
Confidence 543
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=1.6e-18 Score=202.39 Aligned_cols=332 Identities=16% Similarity=0.183 Sum_probs=213.2
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSE 589 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~ 589 (886)
..+++++.++.+..+|... .++|++|++++|.+..+++..|.++++|++|+|++| .++.+ |..++++.+|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC
Confidence 4478889999888877643 389999999999999999888999999999999999 77766 67799999999999999
Q ss_pred CCccccchhhhccCCCcEeecccccccccccc-ccccCCCCCCEEEeccCCCccccccccccc----------CC--ccc
Q 035887 590 TSIKELPHELKALTKLKCLNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYSRKIAEDSVQF----------GG--SEI 656 (886)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~----------~~--~~~ 656 (886)
|.++++|.. .+++|++|++++|. +..+|. ..++++++|++|++.+|............. .- ...
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred CcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccccccccc
Confidence 999999988 89999999999997 566552 348999999999999887543100000000 00 000
Q ss_pred hHHHh--------------------------cCCcCCceEEEEec----------------------------cchh--h
Q 035887 657 LVEEL--------------------------ITLEHLNVLSVTLK----------------------------SFGA--L 680 (886)
Q Consensus 657 ~~~~l--------------------------~~L~~L~~L~~~~~----------------------------~~~~--~ 680 (886)
....+ .++++|+.+++..+ .... +
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 00000 01122222222211 0000 0
Q ss_pred hhhhcccccccccceEEEeecCCCCccccc--------------------------------------------------
Q 035887 681 QRLLSCQQLHSSTRALELRRCEDSKSWNIL-------------------------------------------------- 710 (886)
Q Consensus 681 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------------------------------------- 710 (886)
..+.... ...+|+.|+++++.....++..
T Consensus 267 ~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 267 VKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 0000000 0014444554444211111100
Q ss_pred -c-ccccCccceEeeccC-------------CCcceEEeccccccCcc----CCCCCCCccEEEeccCCccccCc--ccc
Q 035887 711 -S-IADLKYLNKLDFAYC-------------TSLEVLRVNYAEVRTTR----EPYGFNSLQRVTIACCSRLREVT--WLV 769 (886)
Q Consensus 711 -~-l~~l~~L~~L~i~~~-------------~~l~~l~~~~~~~~~~~----~~~~~~~L~~L~L~~c~~l~~l~--~l~ 769 (886)
. ...+++|++|+++++ ++++.+.++.+.....+ ....+++|+.|++++|.....+| .+.
T Consensus 346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 0 034556666665542 23344444433332211 13467999999999996544355 377
Q ss_pred cCCCCcEEEEecCccchhhccccccCCCCCCCCC-CcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCC-
Q 035887 770 FAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPF-AKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLD- 847 (886)
Q Consensus 770 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~f-p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~- 847 (886)
.+++|+.|++++|.--..++ ..+ ++|+.|+|+++ .++.++.....+++|+.|+++++ +++.+|..
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~-----------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~ 492 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVF-----------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGV 492 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGG-----------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTS
T ss_pred CcccCCEEECCCCCCCcchh-----------hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 89999999999995333322 233 79999999996 78899887778999999999997 78899986
Q ss_pred CCCCC-CCceEEEcc
Q 035887 848 INSAK-EGKTVIRGD 861 (886)
Q Consensus 848 ~~~~~-l~~l~i~~~ 861 (886)
....+ |+.+.+.+.
T Consensus 493 ~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 493 FDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTTCTTCCCEECCSC
T ss_pred HhcCCCCCEEEecCC
Confidence 33333 888887754
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1e-19 Score=195.47 Aligned_cols=253 Identities=18% Similarity=0.187 Sum_probs=154.5
Q ss_pred CcceeeeecCccccc---cChhhhcCCCCCcEEEccC-CCcccccCccccCccCCCEEeccCCCcc-ccchhhhccCCCc
Q 035887 532 PRLLTLFLGINRLDT---ISSDFFDFMPSLKVLNLSK-NRSLSQLPSGVSKLVSLQYLNLSETSIK-ELPHELKALTKLK 606 (886)
Q Consensus 532 ~~Lr~L~l~~~~l~~---~~~~~~~~l~~Lr~L~Ls~-~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~ 606 (886)
.+++.|++++|.+.. +|. .+..+++|++|++++ +.....+|..++++.+|++|++++|.+. .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999998875 454 488899999999995 6344578989999999999999999988 8888899999999
Q ss_pred EeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc-CCceEEEEeccchhhhhhhc
Q 035887 607 CLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE-HLNVLSVTLKSFGALQRLLS 685 (886)
Q Consensus 607 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~~~~~~~~~~~~l~~ 685 (886)
+|++++|.....+|.. ++.+++|++|++.+|...+.+| ..+.+++ +|+.|++..+.+..
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p-------------~~l~~l~~~L~~L~L~~N~l~~------ 188 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP-------------DSYGSFSKLFTSMTISRNRLTG------ 188 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECC-------------GGGGCCCTTCCEEECCSSEEEE------
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCC-------------HHHhhhhhcCcEEECcCCeeec------
Confidence 9999999754467775 8899999999999887654222 2244554 56666555333211
Q ss_pred ccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccC
Q 035887 686 CQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREV 765 (886)
Q Consensus 686 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 765 (886)
..+ ..+..++ |+.|+++++. ++...+.. ...+++|+.|+|++|.....+
T Consensus 189 --------------------~~~-~~~~~l~-L~~L~Ls~N~-l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 189 --------------------KIP-PTFANLN-LAFVDLSRNM-LEGDASVL--------FGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp --------------------ECC-GGGGGCC-CSEEECCSSE-EEECCGGG--------CCTTSCCSEEECCSSEECCBG
T ss_pred --------------------cCC-hHHhCCc-ccEEECcCCc-ccCcCCHH--------HhcCCCCCEEECCCCceeeec
Confidence 111 1222333 5555554431 21111111 123555666666655443344
Q ss_pred cccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCC
Q 035887 766 TWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLP 845 (886)
Q Consensus 766 ~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 845 (886)
+.+..+++|+.|+|++|.--..++. .+..+++|+.|+|+++.--..++.. ..+++|+.|++.+++.+...|
T Consensus 238 ~~~~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 238 GKVGLSKNLNGLDLRNNRIYGTLPQ--------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGCCCCTTCCEEECCSSCCEECCCG--------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcccccCCCCEEECcCCcccCcCCh--------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 4455556666666665532212221 3445566666666654322233332 445566666666655555444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=4.7e-18 Score=184.26 Aligned_cols=263 Identities=16% Similarity=0.212 Sum_probs=173.3
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccCCCcccc-chhhhccCCCcEeec
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETSIKEL-PHELKALTKLKCLNL 610 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~l 610 (886)
+++++++.++.+..+|..+ .+.|++|++++| .++.+|. .++++.+|++|++++|.++.+ |..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7899999999888888753 368999999999 7887765 799999999999999999988 788999999999999
Q ss_pred cccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccc
Q 035887 611 EYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLH 690 (886)
Q Consensus 611 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~ 690 (886)
++|. +..+|..+ .++|++|++.+|.... .....+.++++|+.|++..+...............
T Consensus 108 s~n~-l~~l~~~~---~~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 108 SKNQ-LKELPEKM---PKTLQELRVHENEITK-------------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp CSSC-CSBCCSSC---CTTCCEEECCSSCCCB-------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred CCCc-CCccChhh---cccccEEECCCCcccc-------------cCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 9996 68888763 3799999999887543 12344677888888887765543322222222334
Q ss_pred cccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc-ccc
Q 035887 691 SSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLV 769 (886)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~ 769 (886)
++|+.|+++++. +..++. .+ .++|++|+++++. ++.+.+... ..+++|+.|+|++|......+ .+.
T Consensus 171 ~~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~n~-l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 171 KKLSYIRIADTN-ITTIPQ-GL--PPSLTELHLDGNK-ITKVDAASL--------KGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp TTCCEEECCSSC-CCSCCS-SC--CTTCSEEECTTSC-CCEECTGGG--------TTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CCcCEEECCCCc-cccCCc-cc--cccCCEEECCCCc-CCccCHHHh--------cCCCCCCEEECCCCcCceeChhhcc
Confidence 566777776654 222322 11 2566677766543 333322222 245667777777664332222 466
Q ss_pred cCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcC-------CCCCccEEeeccCC
Q 035887 770 FAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNAL-------PFPNLLELFVSECP 839 (886)
Q Consensus 770 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~-------~~p~L~~L~i~~C~ 839 (886)
.+++|+.|+|++| .+..++. .+..+++|++|+|+++ .++.++.... ..++|+.|++.+.|
T Consensus 238 ~l~~L~~L~L~~N-~l~~lp~--------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLVKVPG--------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp GSTTCCEEECCSS-CCSSCCT--------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCCCCEEECCCC-cCccCCh--------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 6677777777766 4444432 4556667777777663 3555443211 23556666666654
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.6e-18 Score=188.15 Aligned_cols=284 Identities=17% Similarity=0.186 Sum_probs=203.8
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCcccc-chhhhccCCCcEeec
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSIKEL-PHELKALTKLKCLNL 610 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~l 610 (886)
++++++++++.+..+|..+ .++|++|++++| .++.+| ..++++.+|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 7999999999998888764 368999999999 777764 5799999999999999999988 778999999999999
Q ss_pred cccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccc
Q 035887 611 EYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLH 690 (886)
Q Consensus 611 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~ 690 (886)
++|. +..+|.. +. ++|++|++.+|.... + ....+.++++|+.|++..+........+......
T Consensus 110 ~~n~-l~~l~~~-~~--~~L~~L~l~~n~i~~-~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 110 SKNH-LVEIPPN-LP--SSLVELRIHDNRIRK-V------------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp CSSC-CCSCCSS-CC--TTCCEEECCSSCCCC-C------------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred CCCc-CCccCcc-cc--ccCCEEECCCCccCc-c------------CHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 9996 6789986 33 899999999887643 1 1123678899999998877654332222222323
Q ss_pred cccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc-ccc
Q 035887 691 SSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLV 769 (886)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~ 769 (886)
+|+.|+++++. +..++. .+ .++|+.|+++++ .++.+.+.. ...+++|+.|+|++|......+ .++
T Consensus 173 -~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~n-~i~~~~~~~--------l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 173 -KLNYLRISEAK-LTGIPK-DL--PETLNELHLDHN-KIQAIELED--------LLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -CCSCCBCCSSB-CSSCCS-SS--CSSCSCCBCCSS-CCCCCCTTS--------STTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -ccCEEECcCCC-CCccCc-cc--cCCCCEEECCCC-cCCccCHHH--------hcCCCCCCEEECCCCcCCcCChhHhh
Confidence 78888888875 333432 22 268889998875 344332222 2367899999999985443333 588
Q ss_pred cCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCc-------CCCCCccEEeeccCCCC-
Q 035887 770 FAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNA-------LPFPNLLELFVSECPNL- 841 (886)
Q Consensus 770 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~-------~~~p~L~~L~i~~C~~L- 841 (886)
.+++|+.|+|++| .++.++. .+..+++|+.|+++++ .++.++... ..+++|+.|++.++|-.
T Consensus 239 ~l~~L~~L~L~~N-~l~~lp~--------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 239 FLPTLRELHLDNN-KLSRVPA--------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCT--------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCCCCCEEECCCC-cCeecCh--------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccc
Confidence 9999999999998 5666643 5678899999999984 577765431 12578999999998754
Q ss_pred -CCCCCCCCCCC-CCceEEEcc
Q 035887 842 -KKLPLDINSAK-EGKTVIRGD 861 (886)
Q Consensus 842 -~~lp~~~~~~~-l~~l~i~~~ 861 (886)
...|....... ++.+.+.++
T Consensus 309 ~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 309 WEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGSCGGGGTTBCCSTTEEC---
T ss_pred cccCcccccccchhhhhhcccc
Confidence 22333333333 677766654
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=3.4e-18 Score=203.20 Aligned_cols=130 Identities=25% Similarity=0.287 Sum_probs=113.7
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~ 586 (886)
.++++|++++|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|. .|++|.+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 478999999999988864 478999999999999999999988999999999999999 7888875 579999999999
Q ss_pred ccCCCccccchh-hhccCCCcEeeccccccccc--cccccccCCCCCCEEEeccCCCcc
Q 035887 587 LSETSIKELPHE-LKALTKLKCLNLEYTRYLQK--IPRQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 587 L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
|++|+++.+|.. +++|++|++|++++|. +.. +|.. ++.+++|++|++.+|....
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence 999999999875 8999999999999996 443 4554 7899999999999886543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=7.7e-19 Score=188.58 Aligned_cols=249 Identities=16% Similarity=0.121 Sum_probs=185.4
Q ss_pred cchhhhhccccceE---EcCC-CCCCCcceeeeecC-ccccccChhhhcCCCCCcEEEccCCCccc-ccCccccCccCCC
Q 035887 510 EDRRKISLMRNKIV---ILSK-PPACPRLLTLFLGI-NRLDTISSDFFDFMPSLKVLNLSKNRSLS-QLPSGVSKLVSLQ 583 (886)
Q Consensus 510 ~~~r~l~l~~~~~~---~l~~-~~~~~~Lr~L~l~~-~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~-~lp~~i~~L~~L~ 583 (886)
.++++|++.++.+. .+|. ..++++|++|++++ |.+....+..|..+++|++|++++| .++ .+|..++++.+|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCC
Confidence 36888889888875 3443 47889999999995 7776444445899999999999999 665 8999999999999
Q ss_pred EEeccCCCcc-ccchhhhccCCCcEeeccccccccccccccccCCC-CCCEEEeccCCCcccccccccccCCccchHHHh
Q 035887 584 YLNLSETSIK-ELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFS-GLEVLRMLDCGYSRKIAEDSVQFGGSEILVEEL 661 (886)
Q Consensus 584 ~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 661 (886)
+|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.++ +|++|++.+|...+.+|. .+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~-------------~~ 194 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPP-------------TF 194 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCG-------------GG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCCh-------------HH
Confidence 9999999998 78999999999999999999855588887 78887 999999998876542221 13
Q ss_pred cCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccC
Q 035887 662 ITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRT 741 (886)
Q Consensus 662 ~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~ 741 (886)
..++ |+.|++. ++...... ...+..+++|+.|+++++. +....
T Consensus 195 ~~l~-L~~L~Ls--------------------------~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-------- 237 (313)
T 1ogq_A 195 ANLN-LAFVDLS--------------------------RNMLEGDA-SVLFGSDKNTQKIHLAKNS-LAFDL-------- 237 (313)
T ss_dssp GGCC-CSEEECC--------------------------SSEEEECC-GGGCCTTSCCSEEECCSSE-ECCBG--------
T ss_pred hCCc-ccEEECc--------------------------CCcccCcC-CHHHhcCCCCCEEECCCCc-eeeec--------
Confidence 3333 4444443 33211111 1256678889999988753 22111
Q ss_pred ccCCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccc
Q 035887 742 TREPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKII 820 (886)
Q Consensus 742 ~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i 820 (886)
+....+++|+.|+|++|.....+| ++..+++|+.|+|++|..-..++ ....+++|+.|.+.+.+.+...
T Consensus 238 -~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip---------~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---------QGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp -GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC---------CSTTGGGSCGGGTCSSSEEEST
T ss_pred -CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC---------CCccccccChHHhcCCCCccCC
Confidence 122367999999999996654555 68999999999999995433443 3478999999999998877653
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.2e-18 Score=183.44 Aligned_cols=243 Identities=20% Similarity=0.222 Sum_probs=164.8
Q ss_pred hhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc---CccccCccCCCEEeccCC
Q 035887 514 KISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL---PSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 514 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l---p~~i~~L~~L~~L~L~~~ 590 (886)
.+...++.+..+|.. -.++|++|++++|.+..+|...|.++++|++|++++| .++.. |..+..+.+|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC
Confidence 455555566656542 2468999999999998898888899999999999998 66654 567778899999999999
Q ss_pred CccccchhhhccCCCcEeecccccccccccc-ccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 591 SIKELPHELKALTKLKCLNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 591 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
.+..+|..+..+++|++|++++|. +..+|. ..+..+++|++|++.+|..... ....+..+++|+.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~ 154 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVA-------------FNGIFNGLSSLEV 154 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEEC-------------STTTTTTCTTCCE
T ss_pred ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCcc-------------chhhcccCcCCCE
Confidence 999999889999999999999986 566654 4478899999999988765331 1111334444444
Q ss_pred EEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCC
Q 035887 670 LSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFN 749 (886)
Q Consensus 670 L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (886)
|. ++++..........+..+++|++|+++++ .++.+.+... ..++
T Consensus 155 L~--------------------------l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--------~~l~ 199 (306)
T 2z66_A 155 LK--------------------------MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF--------NSLS 199 (306)
T ss_dssp EE--------------------------CTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT--------TTCT
T ss_pred EE--------------------------CCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHh--------cCCC
Confidence 44 33332111011124566788888888875 3444433322 2577
Q ss_pred CccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCC-cccEEeccccc
Q 035887 750 SLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFA-KLQYLRLQVLT 815 (886)
Q Consensus 750 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp-~L~~L~L~~~~ 815 (886)
+|+.|+|++|......+ .+..+++|+.|+|++|. +..... ..+..+| +|+.|+|++++
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKK-------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSS-------SSCCCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCH-------HHHHhhhccCCEEEccCCC
Confidence 88888888874333222 46778888888888873 443322 2445564 78888887744
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=186.73 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=165.5
Q ss_pred hhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCcc
Q 035887 515 ISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIK 593 (886)
Q Consensus 515 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~ 593 (886)
.+..++.+..+|.. -.++|++|++++|.+..++...|.++++|++|++++| .++.+ |..++++.+|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 34455556556542 2357888888888888887766888888888888888 66655 456888888888888888888
Q ss_pred ccchh-hhccCCCcEeecccccccccccc-ccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEE
Q 035887 594 ELPHE-LKALTKLKCLNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLS 671 (886)
Q Consensus 594 ~LP~~-i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (886)
.+|.. ++++++|++|++++|. +..+|. ..++.+++|++|++.+|.....+ ....+.++++|+.|+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------------~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKI------------QRKDFAGLTFLEELE 180 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEE------------CTTTTTTCCEEEEEE
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccccc------------CHHHccCCCCCCEEE
Confidence 88876 7888888888888885 567776 45778888888888877533322 122356677788888
Q ss_pred EEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCc
Q 035887 672 VTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSL 751 (886)
Q Consensus 672 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L 751 (886)
+..+...... +......++|+.|+++++. ...++...+..+++|+.|+++++. ++.+..... ......+.+
T Consensus 181 l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l-----~~~~~~~~l 251 (353)
T 2z80_A 181 IDASDLQSYE--PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSEL-----STGETNSLI 251 (353)
T ss_dssp EEETTCCEEC--TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC-----------CCCCC
T ss_pred CCCCCcCccC--HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-ccccccccc-----ccccccchh
Confidence 7766543321 1112223566777776664 233332223345677777776642 222111110 111234556
Q ss_pred cEEEeccCCccc----cCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccc
Q 035887 752 QRVTIACCSRLR----EVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLT 815 (886)
Q Consensus 752 ~~L~L~~c~~l~----~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~ 815 (886)
+.+++.++.... .+| ++..+++|+.|+|++| .++.++. ..+..+++|++|+|++++
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-------~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-------GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-------HHHhcCCCCCEEEeeCCC
Confidence 666666653221 122 4566777777777776 4454432 123566777777776643
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=191.24 Aligned_cols=239 Identities=20% Similarity=0.251 Sum_probs=134.3
Q ss_pred hhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCc
Q 035887 514 KISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSI 592 (886)
Q Consensus 514 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i 592 (886)
.+...++.+..+|.. -.++++.|++++|.+..+++..|.++++|++|+|++| .++.++ ..+.++.+|++|+|++|.+
T Consensus 47 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcC
Confidence 344444445555432 2357777777777777777666777777777777777 555544 5677777777777777777
Q ss_pred cccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEE
Q 035887 593 KELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLS 671 (886)
Q Consensus 593 ~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (886)
+.+|.. +..+++|++|++++|. +..+|...+..+++|++|++.+|.....++. ..+.++++|+.|+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE------------GAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT------------TTTTTCSSCCEEE
T ss_pred CeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc------------chhhcccccCeec
Confidence 777663 7777777777777775 5666665577777777777776554432211 1244455555555
Q ss_pred EEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCc
Q 035887 672 VTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSL 751 (886)
Q Consensus 672 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L 751 (886)
+..+.+..++.+ ...++|+.|+|+++. +..+....+..+++|+.|+++++ .++.+..... ..+++|
T Consensus 192 L~~n~l~~~~~~----~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--------~~l~~L 257 (440)
T 3zyj_A 192 LAMCNLREIPNL----TPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAF--------DNLQSL 257 (440)
T ss_dssp CTTSCCSSCCCC----TTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTSS--------TTCTTC
T ss_pred CCCCcCcccccc----CCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEEChhhh--------cCCCCC
Confidence 544333322211 112345555555542 22222224455555555555543 2333322211 134556
Q ss_pred cEEEeccCCccccCc--ccccCCCCcEEEEecC
Q 035887 752 QRVTIACCSRLREVT--WLVFAPNLKIVHIESC 782 (886)
Q Consensus 752 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~ 782 (886)
+.|+|++| .++.++ .+..+++|+.|+|++|
T Consensus 258 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 258 VEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 66666555 333333 2445555566655554
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=5.8e-18 Score=191.99 Aligned_cols=126 Identities=24% Similarity=0.294 Sum_probs=88.1
Q ss_pred hhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCc
Q 035887 514 KISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSI 592 (886)
Q Consensus 514 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i 592 (886)
.+...++.+..+|.. -.+++++|++++|.+..+++..|.++++|++|+|++| .++.++ ..++++.+|++|+|++|.+
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcC
Confidence 344444444444432 2357788888888777777666777888888888887 555544 5677788888888888888
Q ss_pred cccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcc
Q 035887 593 KELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 593 ~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
+.+|.. +..+++|++|++++|. +..+|...+.++++|++|++.+|....
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 777765 6778888888888775 567776667778888888887765443
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.3e-17 Score=193.99 Aligned_cols=255 Identities=18% Similarity=0.164 Sum_probs=147.3
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 590 (886)
+++.|++.+|.+..+|.... ++|++|++++|.+..+|. .+++|++|+|++| .++.+|. .+.+|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 35566666666665554322 677777777776666665 3567777777777 5666665 5667777777777
Q ss_pred CccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceE
Q 035887 591 SIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVL 670 (886)
Q Consensus 591 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 670 (886)
.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|.... +| ..+++|+.|
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~-l~----------------~~~~~L~~L 166 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS-LP----------------ALPSELCKL 166 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC-CC----------------CCCTTCCEE
T ss_pred cCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC-cC----------------CccCCCCEE
Confidence 7777765 45667777777764 5666652 3667777777665432 11 012445555
Q ss_pred EEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCC
Q 035887 671 SVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNS 750 (886)
Q Consensus 671 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~ 750 (886)
.+..+.+..++ ...++|+.|++++|. +..++. .+++|+.|+++++ .++.+ + ..+++
T Consensus 167 ~L~~N~l~~l~------~~~~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N-~l~~l----------~--~~~~~ 222 (622)
T 3g06_A 167 WAYNNQLTSLP------MLPSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNN-RLTSL----------P--ALPSG 222 (622)
T ss_dssp ECCSSCCSCCC------CCCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSSC----------C--CCCTT
T ss_pred ECCCCCCCCCc------ccCCCCcEEECCCCC-CCCCCC----ccchhhEEECcCC-ccccc----------C--CCCCC
Confidence 55544443322 223566667666653 222221 1356666666654 22221 1 12466
Q ss_pred ccEEEeccCCccccCcccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCc
Q 035887 751 LQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNL 830 (886)
Q Consensus 751 L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L 830 (886)
|+.|+|++| .++.+| ..+++|+.|+|++| .++.++ . .+++|+.|+|+++ .++.++.....+++|
T Consensus 223 L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp---------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 223 LKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLP---------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSE 286 (622)
T ss_dssp CCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCC---------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTT
T ss_pred CCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCC---------c--ccccCcEEeCCCC-CCCcCCHHHhhcccc
Confidence 777777666 444454 44566777777666 444432 1 4566777777664 456665555556667
Q ss_pred cEEeeccCC
Q 035887 831 LELFVSECP 839 (886)
Q Consensus 831 ~~L~i~~C~ 839 (886)
+.|++.+|+
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 777776664
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=6.4e-18 Score=185.02 Aligned_cols=272 Identities=18% Similarity=0.219 Sum_probs=179.0
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccCCCccccc-hhhhccCCCc
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETSIKELP-HELKALTKLK 606 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~ 606 (886)
..|+...+.+++++.++.+|..++ ++|++|++++| .++.+|. .++++.+|++|++++|.++.++ ..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 345666678888899999988643 58999999999 7888776 7999999999999999999885 4699999999
Q ss_pred EeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEecc-chhhhhhhc
Q 035887 607 CLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKS-FGALQRLLS 685 (886)
Q Consensus 607 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~-~~~~~~l~~ 685 (886)
+|++++|. +..+|...++++++|++|++.+|.... ++. ...+.++++|+.|++..+. ...+. +.
T Consensus 104 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~-----------~~~~~~l~~L~~L~l~~n~~~~~~~--~~ 168 (353)
T 2z80_A 104 HLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKT-LGE-----------TSLFSHLTKLQILRVGNMDTFTKIQ--RK 168 (353)
T ss_dssp EEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSS-SCS-----------SCSCTTCTTCCEEEEEESSSCCEEC--TT
T ss_pred EEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcc-cCc-----------hhhhccCCCCcEEECCCCccccccC--HH
Confidence 99999996 688888778999999999999987542 111 0136678888888888653 22221 11
Q ss_pred ccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccC
Q 035887 686 CQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREV 765 (886)
Q Consensus 686 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 765 (886)
.....++|+.|+++++.. .......+..+++|++|+++++. ++.++..... .+++|+.|++++|......
T Consensus 169 ~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~--------~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD--------VTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSC-STTHHHHHHH--------HTTTEEEEEEESCBCTTCC
T ss_pred HccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCc-cccchhhhhh--------hcccccEEECCCCcccccc
Confidence 122235677777777642 22222355666777777776653 3322211111 3567777777776322211
Q ss_pred ----cccccCCCCcEEEEecCccchh-----hccccccCCCCCCCCCCcccEEeccccccccccccCc-CCCCCccEEee
Q 035887 766 ----TWLVFAPNLKIVHIESCYDMDE-----IISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNA-LPFPNLLELFV 835 (886)
Q Consensus 766 ----~~l~~l~~L~~L~L~~~~~l~~-----i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i 835 (886)
+.....+.++.++++++. +.. ++. .+..+++|+.|+|+++ .++.++... ..+++|++|++
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~--------~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVK-ITDESLFQVMK--------LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp CC------CCCCCCEEEEESCB-CCHHHHHHHHH--------HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccchhhcccccccc-ccCcchhhhHH--------HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 112335566667776653 222 111 2345677777777774 566666553 45677777777
Q ss_pred ccCC
Q 035887 836 SECP 839 (886)
Q Consensus 836 ~~C~ 839 (886)
.+++
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 7764
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=2.2e-17 Score=186.36 Aligned_cols=271 Identities=18% Similarity=0.157 Sum_probs=170.0
Q ss_pred cchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccC
Q 035887 510 EDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSE 589 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 589 (886)
+++++|++.+|.+..+|. .+++|++|++++|.+..++.. .++|++|++++| .++.+| .++++.+|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence 578888888888776664 347888888888877766542 268889999888 777788 588888999999998
Q ss_pred CCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 590 TSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
|.++.+|..+ .+|++|++++|. +..+|. ++.+++|++|++.+|...+ +|. ..++|+.
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~-l~~----------------~~~~L~~ 219 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKK-LPD----------------LPLSLES 219 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSS-CCC----------------CCTTCCE
T ss_pred CcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCc-CCC----------------CcCcccE
Confidence 8888888654 588888998885 566774 7888889999888876542 111 1136777
Q ss_pred EEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCC---------CcceEEecccccc
Q 035887 670 LSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCT---------SLEVLRVNYAEVR 740 (886)
Q Consensus 670 L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~---------~l~~l~~~~~~~~ 740 (886)
|++..+....++. ....++|+.|+++++. +..++. .+++|+.|+++++. .++.+..+.+...
T Consensus 220 L~l~~n~l~~lp~----~~~l~~L~~L~l~~N~-l~~l~~----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 220 IVAGNNILEELPE----LQNLPFLTTIYADNNL-LKTLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 290 (454)
T ss_dssp EECCSSCCSSCCC----CTTCTTCCEEECCSSC-CSSCCS----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred EECcCCcCCcccc----cCCCCCCCEEECCCCc-CCcccc----cccccCEEECCCCcccccCcccCcCCEEECcCCccC
Confidence 7777665544332 2334678888887764 233321 13677777776642 1222222222111
Q ss_pred CccCCCCCCCccEEEeccCCccccCcccccC-CCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccc
Q 035887 741 TTREPYGFNSLQRVTIACCSRLREVTWLVFA-PNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKI 819 (886)
Q Consensus 741 ~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l-~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~ 819 (886)
..+ ..+++|+.|++++|. +..++ .+ ++|+.|++++| .+..++. .+++|+.|+++++ .++.
T Consensus 291 ~l~--~~~~~L~~L~l~~N~-l~~i~---~~~~~L~~L~Ls~N-~l~~lp~-----------~~~~L~~L~L~~N-~l~~ 351 (454)
T 1jl5_A 291 GLS--ELPPNLYYLNASSNE-IRSLC---DLPPSLEELNVSNN-KLIELPA-----------LPPRLERLIASFN-HLAE 351 (454)
T ss_dssp EES--CCCTTCCEEECCSSC-CSEEC---CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCSC
T ss_pred ccc--CcCCcCCEEECcCCc-CCccc---CCcCcCCEEECCCC-ccccccc-----------cCCcCCEEECCCC-cccc
Confidence 111 112455555555542 22221 22 36666666665 3333321 2577788888774 5666
Q ss_pred cccCcCCCCCccEEeeccCCCCCC
Q 035887 820 IFRNALPFPNLLELFVSECPNLKK 843 (886)
Q Consensus 820 i~~~~~~~p~L~~L~i~~C~~L~~ 843 (886)
++. .+++|+.|++++| +++.
T Consensus 352 lp~---~l~~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYN-PLRE 371 (454)
T ss_dssp CCC---CCTTCCEEECCSS-CCSS
T ss_pred ccc---hhhhccEEECCCC-CCCc
Confidence 654 4677888888776 4444
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.4e-17 Score=188.06 Aligned_cols=279 Identities=24% Similarity=0.280 Sum_probs=159.3
Q ss_pred cchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccC
Q 035887 510 EDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSE 589 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 589 (886)
.+++.|++.+|.+..++... ++|++|++++|.+..+| . +..+++|++|++++| .++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 56777777777766554332 57888888888777776 2 777788888888887 676677543 4778888888
Q ss_pred CCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 590 TSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
|.++.+| +++++++|++|++++|. +..+|.. .++|++|++.+|.... +| .+..+++|+.
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~~-lp--------------~~~~l~~L~~ 241 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILEE-LP--------------ELQNLPFLTT 241 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSS-CC--------------CCTTCTTCCE
T ss_pred CcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCCc-cc--------------ccCCCCCCCE
Confidence 8777777 57778888888887775 4556642 2577777777765431 11 2456666777
Q ss_pred EEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccC---------CCcceEEecccccc
Q 035887 670 LSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYC---------TSLEVLRVNYAEVR 740 (886)
Q Consensus 670 L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~---------~~l~~l~~~~~~~~ 740 (886)
|++..+.+..++. ..++|+.|+++++. +..++. .+++|+.|+++++ ++++.+.++.+...
T Consensus 242 L~l~~N~l~~l~~------~~~~L~~L~l~~N~-l~~l~~----~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 242 IYADNNLLKTLPD------LPPSLEALNVRDNY-LTDLPE----LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310 (454)
T ss_dssp EECCSSCCSSCCS------CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS
T ss_pred EECCCCcCCcccc------cccccCEEECCCCc-ccccCc----ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCC
Confidence 7766554443322 12466666666653 222221 1245555555543 12222222222211
Q ss_pred CccCCCCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccc-
Q 035887 741 TTREPYGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKI- 819 (886)
Q Consensus 741 ~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~- 819 (886)
..+ ..+++|+.|++++|. +..+|.. +++|+.|++++| .++.++ . .+++|++|+++++ .+..
T Consensus 311 ~i~--~~~~~L~~L~Ls~N~-l~~lp~~--~~~L~~L~L~~N-~l~~lp---------~--~l~~L~~L~L~~N-~l~~l 372 (454)
T 1jl5_A 311 SLC--DLPPSLEELNVSNNK-LIELPAL--PPRLERLIASFN-HLAEVP---------E--LPQNLKQLHVEYN-PLREF 372 (454)
T ss_dssp EEC--CCCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCC---------C--CCTTCCEEECCSS-CCSSC
T ss_pred ccc--CCcCcCCEEECCCCc-ccccccc--CCcCCEEECCCC-cccccc---------c--hhhhccEEECCCC-CCCcC
Confidence 111 123689999999984 5556532 689999999988 455542 2 4789999999885 3444
Q ss_pred --cccCcCCC-------------CCccEEeeccCCCCC---CCCCC
Q 035887 820 --IFRNALPF-------------PNLLELFVSECPNLK---KLPLD 847 (886)
Q Consensus 820 --i~~~~~~~-------------p~L~~L~i~~C~~L~---~lp~~ 847 (886)
++.....+ ++|+.|++++++ ++ .+|..
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~s 417 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPES 417 (454)
T ss_dssp CCCCTTCCEEECCC--------------------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhh
Confidence 33333323 789999999874 44 45543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=7.4e-17 Score=182.18 Aligned_cols=223 Identities=21% Similarity=0.280 Sum_probs=182.2
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~ 586 (886)
.+++.|++.+|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|. .+..+.+|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 578999999999977653 478999999999999999999888999999999999999 8888876 589999999999
Q ss_pred ccCCCccccch-hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc
Q 035887 587 LSETSIKELPH-ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE 665 (886)
Q Consensus 587 L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 665 (886)
|++|.+..+|. .+.++++|++|++++|+.+..+|.+.+.++++|++|++.+|.... +..+..++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~l~ 207 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---------------IPNLTPLI 207 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---------------CCCCTTCS
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---------------ccccCCCc
Confidence 99999999987 589999999999999888899998879999999999999987542 12367888
Q ss_pred CCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCC
Q 035887 666 HLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREP 745 (886)
Q Consensus 666 ~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~ 745 (886)
+|+.|+++.+.+..+. +......++|+.|+++++. +..++...+..+++|+.|+++++ .++.++....
T Consensus 208 ~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-------- 275 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLF-------- 275 (440)
T ss_dssp SCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTT--------
T ss_pred ccCEEECCCCccCccC--hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHh--------
Confidence 9999998877654432 2233345789999999875 44444446788999999999986 4554433332
Q ss_pred CCCCCccEEEeccCC
Q 035887 746 YGFNSLQRVTIACCS 760 (886)
Q Consensus 746 ~~~~~L~~L~L~~c~ 760 (886)
..+++|+.|+|++|+
T Consensus 276 ~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 276 TPLHHLERIHLHHNP 290 (440)
T ss_dssp SSCTTCCEEECCSSC
T ss_pred ccccCCCEEEcCCCC
Confidence 258999999999986
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=5.3e-17 Score=188.83 Aligned_cols=254 Identities=20% Similarity=0.163 Sum_probs=198.1
Q ss_pred CcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeecc
Q 035887 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLE 611 (886)
Q Consensus 532 ~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~ 611 (886)
.++++|++++|.+..+|..++ ++|++|++++| .++.+|. .+.+|++|+|++|.|+.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 358999999999999987643 79999999999 8999997 57899999999999999997 78999999999
Q ss_pred ccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccccccc
Q 035887 612 YTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHS 691 (886)
Q Consensus 612 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~ 691 (886)
+|. +..+|. .+++|++|++.+|.... +|. .+++|+.|+++.+.+..++. ...
T Consensus 110 ~N~-l~~l~~----~l~~L~~L~L~~N~l~~-lp~----------------~l~~L~~L~Ls~N~l~~l~~------~~~ 161 (622)
T 3g06_A 110 SNP-LTHLPA----LPSGLCKLWIFGNQLTS-LPV----------------LPPGLQELSVSDNQLASLPA------LPS 161 (622)
T ss_dssp SCC-CCCCCC----CCTTCCEEECCSSCCSC-CCC----------------CCTTCCEEECCSSCCSCCCC------CCT
T ss_pred CCc-CCCCCC----CCCCcCEEECCCCCCCc-CCC----------------CCCCCCEEECcCCcCCCcCC------ccC
Confidence 996 677886 57899999999887543 211 24788888888776654432 336
Q ss_pred ccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcccccC
Q 035887 692 STRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVFA 771 (886)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l 771 (886)
+|+.|+++++. +..++ ..+++|+.|+++++. ++.+ + ..+++|+.|++++| .+..+|. .+
T Consensus 162 ~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~-l~~l----------~--~~~~~L~~L~L~~N-~l~~l~~--~~ 220 (622)
T 3g06_A 162 ELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQ-LASL----------P--TLPSELYKLWAYNN-RLTSLPA--LP 220 (622)
T ss_dssp TCCEEECCSSC-CSCCC----CCCTTCCEEECCSSC-CSCC----------C--CCCTTCCEEECCSS-CCSSCCC--CC
T ss_pred CCCEEECCCCC-CCCCc----ccCCCCcEEECCCCC-CCCC----------C--CccchhhEEECcCC-cccccCC--CC
Confidence 89999998874 34443 346889999998753 4432 1 14689999999998 5556653 35
Q ss_pred CCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCCCCCCCCCCCC
Q 035887 772 PNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNLKKLPLDINSA 851 (886)
Q Consensus 772 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~ 851 (886)
++|+.|+|++| .++.++ ..+++|+.|+|+++ .++.++. .+++|+.|++++| +|+.+|......
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-----------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred CCCCEEEccCC-ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 89999999998 566542 46799999999995 7888775 5799999999998 888998765554
Q ss_pred C-CCceEEEcc
Q 035887 852 K-EGKTVIRGD 861 (886)
Q Consensus 852 ~-l~~l~i~~~ 861 (886)
+ |+.+.+.++
T Consensus 284 ~~L~~L~L~~N 294 (622)
T 3g06_A 284 SSETTVNLEGN 294 (622)
T ss_dssp CTTCEEECCSC
T ss_pred cccCEEEecCC
Confidence 4 777877765
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=6e-17 Score=183.58 Aligned_cols=221 Identities=24% Similarity=0.272 Sum_probs=169.3
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 586 (886)
+++++|++.+|.+..++. ..++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. ++.+.+|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 589999999999977643 478999999999999999998888999999999999999 78887754 88899999999
Q ss_pred ccCCCccccch-hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc
Q 035887 587 LSETSIKELPH-ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE 665 (886)
Q Consensus 587 L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 665 (886)
|++|.+..+|. .+.++++|++|++++|+.+..+|.+.+..+++|++|++.+|.... + ..+..++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~--------------~~~~~l~ 218 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M--------------PNLTPLV 218 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C--------------CCCTTCT
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c--------------ccccccc
Confidence 99999999987 589999999999999888999998878999999999999886532 0 1133334
Q ss_pred CCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCC
Q 035887 666 HLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREP 745 (886)
Q Consensus 666 ~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~ 745 (886)
+|+.|+++++. +..+....+..+++|+.|+++++ .+..+.+...
T Consensus 219 --------------------------~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-------- 262 (452)
T 3zyi_A 219 --------------------------GLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAF-------- 262 (452)
T ss_dssp --------------------------TCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEECTTTT--------
T ss_pred --------------------------cccEEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceECHHHh--------
Confidence 44455555443 22232235667778888888765 3443333222
Q ss_pred CCCCCccEEEeccCCccccCc--ccccCCCCcEEEEecCc
Q 035887 746 YGFNSLQRVTIACCSRLREVT--WLVFAPNLKIVHIESCY 783 (886)
Q Consensus 746 ~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 783 (886)
..+++|+.|+|++| .+..++ .+..+++|+.|+|++|+
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 25778888888887 444544 36678888888888764
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=6.2e-18 Score=182.03 Aligned_cols=245 Identities=15% Similarity=0.095 Sum_probs=146.5
Q ss_pred CCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEee
Q 035887 530 ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLN 609 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~ 609 (886)
.+++|++|++++|.+..+++..|..+++|++|+|++| .++..++ ++.+.+|++|++++|.++.+|. +++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 4568888888888888887777888888888888888 6666654 8888888888888888887763 47888888
Q ss_pred ccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccccc
Q 035887 610 LEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQL 689 (886)
Q Consensus 610 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~ 689 (886)
+++|. +..++.. .+++|++|++.+|...... ...+..+++|
T Consensus 106 l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~-------------~~~~~~l~~L---------------------- 146 (317)
T 3o53_A 106 AANNN-ISRVSCS---RGQGKKNIYLANNKITMLR-------------DLDEGCRSRV---------------------- 146 (317)
T ss_dssp CCSSC-CSEEEEC---CCSSCEEEECCSSCCCSGG-------------GBCTGGGSSE----------------------
T ss_pred CCCCc-cCCcCcc---ccCCCCEEECCCCCCCCcc-------------chhhhccCCC----------------------
Confidence 88886 5666543 4678888888877654310 0112334444
Q ss_pred ccccceEEEeecCCCCccccccc-cccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCccc
Q 035887 690 HSSTRALELRRCEDSKSWNILSI-ADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWL 768 (886)
Q Consensus 690 ~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l 768 (886)
+.|+++++. +...+...+ ..+++|++|+++++. ++.++. ...+++|+.|+|++|......+.+
T Consensus 147 ----~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----------~~~l~~L~~L~Ls~N~l~~l~~~~ 210 (317)
T 3o53_A 147 ----QYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVKG----------QVVFAKLKTLDLSSNKLAFMGPEF 210 (317)
T ss_dssp ----EEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC----------CCCCTTCCEEECCSSCCCEECGGG
T ss_pred ----CEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccccc----------ccccccCCEEECCCCcCCcchhhh
Confidence 444444432 122211122 245666666666543 333311 113566666666666333223345
Q ss_pred ccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccc-cccccCcCCCCCccEEeeccCCCCCCC
Q 035887 769 VFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKL-KIIFRNALPFPNLLELFVSECPNLKKL 844 (886)
Q Consensus 769 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L-~~i~~~~~~~p~L~~L~i~~C~~L~~l 844 (886)
..+++|+.|+|++| .++.++. .+..+++|+.|+|++++-. ..++.....+++|+.|++.+|+.++..
T Consensus 211 ~~l~~L~~L~L~~N-~l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 211 QSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp GGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cccCcccEEECcCC-cccchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 66666666666666 4444432 3455666666666664422 122222334566666666666555543
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=4e-18 Score=183.49 Aligned_cols=263 Identities=17% Similarity=0.130 Sum_probs=191.3
Q ss_pred CcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCccccchhhhccCCCcEeec
Q 035887 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNL 610 (886)
Q Consensus 532 ~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l 610 (886)
..+..+++..+.+...+...+..+++|++|+|++| .++.++ ..++.+.+|++|++++|.+..++. +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence 34566677777776777777888899999999999 777665 679999999999999999998775 999999999999
Q ss_pred cccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccc
Q 035887 611 EYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLH 690 (886)
Q Consensus 611 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~ 690 (886)
++|. +..+|. +++|++|++.+|..... + ...+
T Consensus 88 s~n~-l~~l~~-----~~~L~~L~l~~n~l~~~-~---------------~~~~-------------------------- 119 (317)
T 3o53_A 88 NNNY-VQELLV-----GPSIETLHAANNNISRV-S---------------CSRG-------------------------- 119 (317)
T ss_dssp CSSE-EEEEEE-----CTTCCEEECCSSCCSEE-E---------------ECCC--------------------------
T ss_pred cCCc-cccccC-----CCCcCEEECCCCccCCc-C---------------cccc--------------------------
Confidence 9996 566653 48999999998765430 0 0011
Q ss_pred cccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCccccc
Q 035887 691 SSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTWLVF 770 (886)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~ 770 (886)
++|+.|+++++. +...+...+..+++|+.|+++++ .++.+.+.... ..+++|+.|+|++| .+..++....
T Consensus 120 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-------~~l~~L~~L~L~~N-~l~~~~~~~~ 189 (317)
T 3o53_A 120 QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA-------ASSDTLEHLNLQYN-FIYDVKGQVV 189 (317)
T ss_dssp SSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGG-------GGTTTCCEEECTTS-CCCEEECCCC
T ss_pred CCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHh-------hccCcCCEEECCCC-cCcccccccc
Confidence 356667776664 33333336677899999999986 45544433321 14789999999999 4666676677
Q ss_pred CCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeeccCCCC-CCCCCCCC
Q 035887 771 APNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSECPNL-KKLPLDIN 849 (886)
Q Consensus 771 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L-~~lp~~~~ 849 (886)
+++|+.|+|++| .++.++. .+..+++|+.|+|+++ .++.++.....+++|+.|++.+++-- ..+|....
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~--------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp CTTCCEEECCSS-CCCEECG--------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cccCCEEECCCC-cCCcchh--------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 999999999998 5666644 4667899999999995 68888877778899999999998654 23333222
Q ss_pred CCC-CCceEEEccccc
Q 035887 850 SAK-EGKTVIRGDQHW 864 (886)
Q Consensus 850 ~~~-l~~l~i~~~~~~ 864 (886)
..+ ++.+.+.++..+
T Consensus 260 ~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 260 KNQRVQTVAKQTVKKL 275 (317)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccccceEEECCCchhc
Confidence 222 444444444333
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=1.6e-16 Score=188.86 Aligned_cols=342 Identities=18% Similarity=0.174 Sum_probs=209.8
Q ss_pred ccccccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccC
Q 035887 505 EVRKWEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVS 581 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~ 581 (886)
.+..++++++|++++|.+..++. ..++++|++|++++|.+..+|+..|.++++|++|+|++| .++.+|. .|+++.+
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcc
Confidence 34567899999999999988765 367999999999999999999988999999999999999 7888875 5899999
Q ss_pred CCEEeccCCCccc--cchhhhccCCCcEeeccccccccccccccccCCCC---------------------------CCE
Q 035887 582 LQYLNLSETSIKE--LPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSG---------------------------LEV 632 (886)
Q Consensus 582 L~~L~L~~~~i~~--LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~---------------------------L~~ 632 (886)
|++|++++|.++. +|..++.+++|++|++++|. +..++.+.+..+.+ ++.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 9999999999874 57889999999999999985 34443222221111 111
Q ss_pred EEeccCCCcccc----------------------------------------------------------cc--------
Q 035887 633 LRMLDCGYSRKI----------------------------------------------------------AE-------- 646 (886)
Q Consensus 633 L~l~~~~~~~~~----------------------------------------------------------~~-------- 646 (886)
|.+.++.....+ ..
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 221111000000 00
Q ss_pred --------------ccccc-------------C-----------------CccchHHHhcCCcCCceEEEEeccchhhhh
Q 035887 647 --------------DSVQF-------------G-----------------GSEILVEELITLEHLNVLSVTLKSFGALQR 682 (886)
Q Consensus 647 --------------~~~~~-------------~-----------------~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~ 682 (886)
..... . ...........+++|+.+.+..+.......
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 00000 0 000000111246778888776554322111
Q ss_pred hhcccccccccceEEEeecCCCCccccccccccCccceEeeccC--------------CCcceEEeccccccCc--cCCC
Q 035887 683 LLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYC--------------TSLEVLRVNYAEVRTT--REPY 746 (886)
Q Consensus 683 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~--------------~~l~~l~~~~~~~~~~--~~~~ 746 (886)
.........+|+.|++..+.... .+ ..+..+++|+.+++..+ ..+..+.......... ....
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-EC-SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccchhhhhhhhhhhcccccccc-cc-ccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 11111122345555554432111 00 02223344444443321 1111111111111000 1224
Q ss_pred CCCCccEEEeccCCccccC-c-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccC-
Q 035887 747 GFNSLQRVTIACCSRLREV-T-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRN- 823 (886)
Q Consensus 747 ~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~- 823 (886)
.+++|+.|+|++|.....+ | .+..+++|+.|+|++| .++.++. ..+..+++|++|+|+++ +++.++..
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-------~~f~~l~~L~~L~Ls~N-~l~~l~~~~ 537 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNMSHN-NFFSLDTFP 537 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECTTS-CCCBCCCGG
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-------HHHcCCCCCCEEECCCC-cCCCCChhH
Confidence 6789999999998755543 3 5788999999999999 5776654 36778999999999984 67777543
Q ss_pred cCCCCCccEEeeccCCCCCCCCC-CCCCC--CCCceEEEc
Q 035887 824 ALPFPNLLELFVSECPNLKKLPL-DINSA--KEGKTVIRG 860 (886)
Q Consensus 824 ~~~~p~L~~L~i~~C~~L~~lp~-~~~~~--~l~~l~i~~ 860 (886)
...+++|+.|+++++ +|+.+|. ..... .|+.+.+.+
T Consensus 538 ~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 456899999999997 6666544 33332 277777753
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.7e-16 Score=170.06 Aligned_cols=224 Identities=21% Similarity=0.230 Sum_probs=169.4
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccC--hhhhcCCCCCcEEEccCCCcccccCccccCccCCCEE
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTIS--SDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYL 585 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~--~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 585 (886)
+++++|++.+|.+..++. ..++++|++|++++|.+..+. +..+..+++|++|++++| .++.+|..+..+.+|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 589999999999988776 368999999999999877552 233567999999999999 888999999999999999
Q ss_pred eccCCCccccch--hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcC
Q 035887 586 NLSETSIKELPH--ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELIT 663 (886)
Q Consensus 586 ~L~~~~i~~LP~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (886)
++++|.++.+|. .+..+++|++|++++|. +...+...+..+++|++|++.+|...... ....+..
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------~~~~~~~ 173 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF------------LPDIFTE 173 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGE------------ECSCCTT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccccc------------chhHHhh
Confidence 999999998875 69999999999999997 45555555889999999999988653210 0111233
Q ss_pred CcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCcc
Q 035887 664 LEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTR 743 (886)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~ 743 (886)
++ +|+.|+++++. +...+...+..+++|+.|+++++. ++.+.....
T Consensus 174 l~--------------------------~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~------ 219 (306)
T 2z66_A 174 LR--------------------------NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPY------ 219 (306)
T ss_dssp CT--------------------------TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGG------
T ss_pred Cc--------------------------CCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc-cCccChhhc------
Confidence 33 45555555553 233322356778999999998864 443322222
Q ss_pred CCCCCCCccEEEeccCCccccCc-ccccCC-CCcEEEEecCc
Q 035887 744 EPYGFNSLQRVTIACCSRLREVT-WLVFAP-NLKIVHIESCY 783 (886)
Q Consensus 744 ~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~-~L~~L~L~~~~ 783 (886)
..+++|+.|+|++|......+ .+..+| +|+.|+|++|+
T Consensus 220 --~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 220 --KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred --cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 268999999999996555444 577775 99999999985
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.5e-16 Score=168.51 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=143.4
Q ss_pred hhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCC-
Q 035887 514 KISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETS- 591 (886)
Q Consensus 514 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~- 591 (886)
.++...+.+..+|. ...++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+.+|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCC
Confidence 34455555555543 23468888888888888887777888888888888888 66655 6678888888888888886
Q ss_pred cccc-chhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceE
Q 035887 592 IKEL-PHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVL 670 (886)
Q Consensus 592 i~~L-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 670 (886)
+..+ |..+..+++|++|++++|. +..++...+..+++|++|++.+|.... ++ ...+..++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~------------~~~~~~l~----- 153 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA-LP------------DDTFRDLG----- 153 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-CC------------TTTTTTCT-----
T ss_pred ccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccc-cC------------HhHhccCC-----
Confidence 7777 5668888888888888886 455655557788888888888775432 10 01123333
Q ss_pred EEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCC
Q 035887 671 SVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNS 750 (886)
Q Consensus 671 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~ 750 (886)
+|+.|+++++. +..++...+..+++|+.|+++++. +..+.+... ..+++
T Consensus 154 ---------------------~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~--------~~l~~ 202 (285)
T 1ozn_A 154 ---------------------NLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAF--------RDLGR 202 (285)
T ss_dssp ---------------------TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT--------TTCTT
T ss_pred ---------------------CccEEECCCCc-ccccCHHHhcCccccCEEECCCCc-ccccCHhHc--------cCccc
Confidence 34444444442 223332245667788888887753 443323222 25678
Q ss_pred ccEEEeccCCccccCc--ccccCCCCcEEEEecCc
Q 035887 751 LQRVTIACCSRLREVT--WLVFAPNLKIVHIESCY 783 (886)
Q Consensus 751 L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 783 (886)
|+.|+|++|. +..++ .+..+++|+.|+|++|+
T Consensus 203 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 203 LMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 8888888874 44444 37778888888888774
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.3e-16 Score=181.88 Aligned_cols=243 Identities=16% Similarity=0.104 Sum_probs=176.5
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEe
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCL 608 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L 608 (886)
..+++|++|++++|.+..+++..|..+++|++|+|++| .++..++ ++.+.+|++|+|++|.|+.+|.. ++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 35668999999999998888877899999999999999 7776664 88999999999999999988743 899999
Q ss_pred eccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccc
Q 035887 609 NLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQ 688 (886)
Q Consensus 609 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~ 688 (886)
++++|. +..+|.. .+++|++|++.+|......+ ..+.++
T Consensus 105 ~L~~N~-l~~~~~~---~l~~L~~L~L~~N~l~~~~~-------------~~~~~l------------------------ 143 (487)
T 3oja_A 105 HAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-------------LDEGCR------------------------ 143 (487)
T ss_dssp ECCSSC-CCCEEEC---CCSSCEEEECCSSCCCSGGG-------------BCGGGG------------------------
T ss_pred ECcCCc-CCCCCcc---ccCCCCEEECCCCCCCCCCc-------------hhhcCC------------------------
Confidence 999986 5666653 57889999999887643111 012223
Q ss_pred cccccceEEEeecCCCCcccccccc-ccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcc
Q 035887 689 LHSSTRALELRRCEDSKSWNILSIA-DLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTW 767 (886)
Q Consensus 689 ~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~ 767 (886)
++|+.|+++++.. ...+...+. .+++|+.|+++++. +..++. ...+++|+.|+|++|.....++.
T Consensus 144 --~~L~~L~Ls~N~l-~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 144 --SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNF-IYDVKG----------QVVFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp --SSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTSC-CCEEEC----------CCCCTTCCEEECCSSCCCEECGG
T ss_pred --CCCCEEECCCCCC-CCcChHHHhhhCCcccEEecCCCc-cccccc----------cccCCCCCEEECCCCCCCCCCHh
Confidence 3555666665542 222222343 68999999999864 554421 12589999999999965444557
Q ss_pred cccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccc-cccccCcCCCCCccEEeeccCCCC
Q 035887 768 LVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKL-KIIFRNALPFPNLLELFVSECPNL 841 (886)
Q Consensus 768 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L-~~i~~~~~~~p~L~~L~i~~C~~L 841 (886)
++.+++|+.|+|++| .+..++. .+..+++|+.|++++++-. ..++.....++.|+.|.+..+..+
T Consensus 210 ~~~l~~L~~L~Ls~N-~l~~lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 210 FQSAAGVTWISLRNN-KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp GGGGTTCSEEECTTS-CCCEECT--------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCCCccEEEecCC-cCcccch--------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccc
Confidence 889999999999998 5666543 5678899999999996644 233333455788888887644333
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1.1e-15 Score=161.86 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=157.7
Q ss_pred eeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCcccc-chhhhccCCCcEeeccc
Q 035887 535 LTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSIKEL-PHELKALTKLKCLNLEY 612 (886)
Q Consensus 535 r~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~ 612 (886)
++++..++.+..+|..+ .++|++|++++| .++.+| ..++.+.+|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 67888888888888653 568999999999 777776 5689999999999999999988 67799999999999999
Q ss_pred cccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccc
Q 035887 613 TRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSS 692 (886)
Q Consensus 613 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~ 692 (886)
|..+..++...+..+++|++|++.+|..... ....+.++++|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L------------------------- 131 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-------------GPGLFRGLAAL------------------------- 131 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-------------CTTTTTTCTTC-------------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEE-------------CHhHhhCCcCC-------------------------
Confidence 9757778555589999999999998875431 01113344444
Q ss_pred cceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc-ccccC
Q 035887 693 TRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLVFA 771 (886)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l 771 (886)
+.|+++++. +..++...+..+++|++|+++++ .++.+..... ..+++|+.|++++|......+ .+..+
T Consensus 132 -~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 132 -QYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAF--------RGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp -CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTT--------TTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred -CEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHh--------cCccccCEEECCCCcccccCHhHccCc
Confidence 444444442 22333234667888999998875 4554433222 257889999998885444333 57788
Q ss_pred CCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccc
Q 035887 772 PNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLT 815 (886)
Q Consensus 772 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~ 815 (886)
++|+.|+|++| .++.++. ..+..+++|+.|+|++++
T Consensus 201 ~~L~~L~l~~n-~l~~~~~-------~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFAN-NLSALPT-------EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSS-CCSCCCH-------HHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCC-cCCcCCH-------HHcccCcccCEEeccCCC
Confidence 88999988888 4554432 135567888888888754
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=5.5e-17 Score=174.14 Aligned_cols=245 Identities=17% Similarity=0.116 Sum_probs=149.9
Q ss_pred ccchhhhhccccceEEcCCCCCCCcceeeeecCccccc--cChhhh------cCCCCCcEEEccCCCccc-ccCccc--c
Q 035887 509 WEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDT--ISSDFF------DFMPSLKVLNLSKNRSLS-QLPSGV--S 577 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~--~~~~~~------~~l~~Lr~L~Ls~~~~i~-~lp~~i--~ 577 (886)
..+++.+.+.+|.+ .+|.. -...|++|++.+|.+.. +|.... ..+++|++|++++| .++ .+|..+ +
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQ-FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHH-HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc-ccHHH-HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHh
Confidence 35678888888877 44321 11238888888886643 343321 26889999999999 565 678776 8
Q ss_pred CccCCCEEeccCCCccccchhhhcc-----CCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccC
Q 035887 578 KLVSLQYLNLSETSIKELPHELKAL-----TKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFG 652 (886)
Q Consensus 578 ~L~~L~~L~L~~~~i~~LP~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 652 (886)
.+.+|++|++++|.++.+|..++.+ ++|++|++++|. +..+|...++.+++|++|++++|...+.+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 189 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER-------- 189 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH--------
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch--------
Confidence 8999999999999998888888887 899999999986 56676555889999999999988754311
Q ss_pred CccchHHHh--cCCcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcc
Q 035887 653 GSEILVEEL--ITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLE 730 (886)
Q Consensus 653 ~~~~~~~~l--~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~ 730 (886)
..+..+ ..+++|+.|++..+.+..+..+.. ..+..+++|+.|+++++. ++
T Consensus 190 ---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------~~~~~l~~L~~L~Ls~N~-l~ 241 (312)
T 1wwl_A 190 ---GLISALCPLKFPTLQVLALRNAGMETPSGVCS------------------------ALAAARVQLQGLDLSHNS-LR 241 (312)
T ss_dssp ---HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH------------------------HHHHTTCCCSEEECTTSC-CC
T ss_pred ---HHHHHHHhccCCCCCEEECCCCcCcchHHHHH------------------------HHHhcCCCCCEEECCCCc-CC
Confidence 112223 556666666655444332222111 012234555666665532 22
Q ss_pred eEEeccccccCccCCCCCCCccEEEeccCCccccCc-ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEE
Q 035887 731 VLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT-WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYL 809 (886)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L 809 (886)
...+. +....+++|+.|+|++|. ++.+| .+. ++|+.|+|++| .++.++ .+..+++|++|
T Consensus 242 ~~~~~-------~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p---------~~~~l~~L~~L 301 (312)
T 1wwl_A 242 DAAGA-------PSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNP---------SPDELPQVGNL 301 (312)
T ss_dssp SSCCC-------SCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCC---------CTTTSCEEEEE
T ss_pred cccch-------hhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCCh---------hHhhCCCCCEE
Confidence 11100 011134666666666663 33444 232 66667777666 344431 24556677777
Q ss_pred eccc
Q 035887 810 RLQV 813 (886)
Q Consensus 810 ~L~~ 813 (886)
+|++
T Consensus 302 ~L~~ 305 (312)
T 1wwl_A 302 SLKG 305 (312)
T ss_dssp ECTT
T ss_pred eccC
Confidence 7766
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=7.7e-16 Score=158.33 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=46.9
Q ss_pred CCcEEEccCCCcccccCc-cccCccCCCEEeccCCC-ccccch-hhhccCCCcEeeccccccccccccccccCCCCCCEE
Q 035887 557 SLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETS-IKELPH-ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVL 633 (886)
Q Consensus 557 ~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~-i~~LP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 633 (886)
.|++|++++| .++.+|. .++.+.+|++|++++|. ++.+|. .+.++++|++|++++|+.+..+|...+..+++|++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5666666666 5555544 45556666666666664 665554 355666666666665223555555445566666666
Q ss_pred EeccCC
Q 035887 634 RMLDCG 639 (886)
Q Consensus 634 ~l~~~~ 639 (886)
++.+|.
T Consensus 111 ~l~~n~ 116 (239)
T 2xwt_C 111 GIFNTG 116 (239)
T ss_dssp EEEEEC
T ss_pred eCCCCC
Confidence 666554
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=7.7e-16 Score=164.64 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=137.1
Q ss_pred hhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCC
Q 035887 512 RRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETS 591 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~ 591 (886)
+.++.+..+.+........+++|++|++.++.+..++. +..+++|++|++++| .++.+|. ++.+.+|++|++++|.
T Consensus 21 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC
T ss_pred HHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc
Confidence 33334444433322233456788888888887777763 677888888888888 7777776 8888888888888888
Q ss_pred ccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEE
Q 035887 592 IKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLS 671 (886)
Q Consensus 592 i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (886)
++.+| .+..+++|++|++++|. +..+|. +..+++|++|++.+|.... +..+..+++
T Consensus 97 l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~l~~l~~----- 152 (308)
T 1h6u_A 97 LKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITN---------------ISPLAGLTN----- 152 (308)
T ss_dssp CSCCG-GGTTCTTCCEEECTTSC-CCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGGCTT-----
T ss_pred CCCch-hhcCCCCCCEEECCCCC-CCCchh--hcCCCCCCEEECCCCccCc---------------CccccCCCC-----
Confidence 88876 58888888888888886 566775 7888888888888776432 001333443
Q ss_pred EEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCc
Q 035887 672 VTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSL 751 (886)
Q Consensus 672 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L 751 (886)
|+.|++++|. +..++ .+..+++|+.|+++++. ++.+.. ...+++|
T Consensus 153 ---------------------L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n~-l~~~~~----------l~~l~~L 197 (308)
T 1h6u_A 153 ---------------------LQYLSIGNAQ-VSDLT--PLANLSKLTTLKADDNK-ISDISP----------LASLPNL 197 (308)
T ss_dssp ---------------------CCEEECCSSC-CCCCG--GGTTCTTCCEEECCSSC-CCCCGG----------GGGCTTC
T ss_pred ---------------------ccEEEccCCc-CCCCh--hhcCCCCCCEEECCCCc-cCcChh----------hcCCCCC
Confidence 4444444442 22222 24556677777776642 332211 1256778
Q ss_pred cEEEeccCCccccCcccccCCCCcEEEEecCc
Q 035887 752 QRVTIACCSRLREVTWLVFAPNLKIVHIESCY 783 (886)
Q Consensus 752 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 783 (886)
+.|+|++| .+..++++..+++|+.|++++|+
T Consensus 198 ~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 198 IEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 88888877 45555567777888888887773
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.2e-16 Score=179.97 Aligned_cols=239 Identities=15% Similarity=0.115 Sum_probs=170.9
Q ss_pred ccchhhhhccccceEEcC--CCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEe
Q 035887 509 WEDRRKISLMRNKIVILS--KPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLN 586 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 586 (886)
++++++|++.+|.+..++ ....+++|++|++++|.+...++ +..+++|++|+|++| .++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 348999999999987765 34789999999999998877666 889999999999999 8887774 38999999
Q ss_pred ccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHh-cCCc
Q 035887 587 LSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEEL-ITLE 665 (886)
Q Consensus 587 L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~ 665 (886)
+++|.+..+|.. .+++|++|++++|. +..+++..++.+++|++|++++|......+ ..+ .+++
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~l~~~l~ 169 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------------AELAASSD 169 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEG-------------GGGGGGTT
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcCh-------------HHHhhhCC
Confidence 999999988764 57899999999997 566655458899999999999987654211 112 1344
Q ss_pred CCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCC
Q 035887 666 HLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREP 745 (886)
Q Consensus 666 ~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~ 745 (886)
+|+ .|++++|. +...+ ....+++|+.|+++++ .+..+++.+.
T Consensus 170 ~L~--------------------------~L~Ls~N~-l~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~-------- 211 (487)
T 3oja_A 170 TLE--------------------------HLNLQYNF-IYDVK--GQVVFAKLKTLDLSSN-KLAFMGPEFQ-------- 211 (487)
T ss_dssp TCC--------------------------EEECTTSC-CCEEE--CCCCCTTCCEEECCSS-CCCEECGGGG--------
T ss_pred ccc--------------------------EEecCCCc-ccccc--ccccCCCCCEEECCCC-CCCCCCHhHc--------
Confidence 444 44444443 22222 2334678888888875 4554433322
Q ss_pred CCCCCccEEEeccCCccccCcccccCCCCcEEEEecCccc-hhhccccccCCCCCCCCCCcccEEeccccccc
Q 035887 746 YGFNSLQRVTIACCSRLREVTWLVFAPNLKIVHIESCYDM-DEIISAWKLGEVPGLNPFAKLQYLRLQVLTKL 817 (886)
Q Consensus 746 ~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l-~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L 817 (886)
.+++|+.|+|++|.....++.++.+++|+.|++++|+.. ..++. .+..+++|+.|.+..+..+
T Consensus 212 -~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~--------~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 212 -SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD--------FFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp -GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH--------HHTTCHHHHHHHHHHHHHH
T ss_pred -CCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH--------HHHhCCCCcEEeccccccc
Confidence 578899999998854433335778899999999888544 22221 3456778888877654433
No 72
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.63 E-value=1.6e-14 Score=157.85 Aligned_cols=287 Identities=15% Similarity=0.074 Sum_probs=180.8
Q ss_pred CCccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC------CHHHHHHH
Q 035887 153 EPTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM------QLESVQEK 226 (886)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~------~~~~~~~~ 226 (886)
++.++||+++++++.+++..+ +++.|+|++|+|||||++++.++. . .+|+.+.... +...++..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 357899999999999998764 799999999999999999999875 1 6788765432 56666776
Q ss_pred HHHHhCC-----------------CC---CCCHHHHHHHHHHHhcc-CcEEEEEccccchhh---------hhhccCCCC
Q 035887 227 IGERIGF-----------------LE---NRSLEEKASGIFKILSK-KKFLLLLDDIWERVD---------LAKLGVPFP 276 (886)
Q Consensus 227 i~~~l~~-----------------~~---~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~~~ 276 (886)
+.+.+.. .. ..+..++...+.+..+. ++++||+||++.... +..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 6665542 00 13456666666666653 499999999975322 222222221
Q ss_pred CCCCCCcEEEEEcCChhh-hhc----------cCc-cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHc
Q 035887 277 AISKNASKIVFTTRLENV-CGL----------MET-QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKEC 344 (886)
Q Consensus 277 ~~~~~gs~iiiTtR~~~v-~~~----------~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c 344 (886)
...+.++|+|++.... ... .+. ...+++.+|+.+|+.+++...+...... --.+.+..|++.|
T Consensus 161 --~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~t 235 (350)
T 2qen_A 161 --SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELL 235 (350)
T ss_dssp --HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHH
T ss_pred --hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHh
Confidence 1247889999887643 111 111 2478999999999999998765322211 1245678999999
Q ss_pred CCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCC---CcchHHHHHhhhcCCCCCcccC
Q 035887 345 CGLPLALITTGRAMSGKKTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSL---SSDVLRFCLLYCSLFPEDYHIG 421 (886)
Q Consensus 345 ~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~cfl~~s~fp~~~~i~ 421 (886)
+|+|+++..++..+....+...+. ..+.. .+...+.-.+..+ ++ ..+..+..+|. + ..+
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL---G-YNR 297 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT---T-CCS
T ss_pred CCCHHHHHHHHHHHhccccHhHHH---HHHHH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh---C-CCC
Confidence 999999999887653222222221 11111 1111111111122 55 78889988887 2 234
Q ss_pred HHHHHHHHHhcCCcCCccCcchhhhhhhHHHHHHHHhcccccCCc-eEEeehhHHHHHH
Q 035887 422 KIELIECWIGEGFLNGYEGINGVHNKGYYIIGVLVQACLLEVGSD-YVKMHDVIRDMAL 479 (886)
Q Consensus 422 ~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~-~~~mHdlv~d~a~ 479 (886)
...+....-+.. - + ........+++.|.+.+++...++ +...|.+++++.+
T Consensus 298 ~~~l~~~~~~~~-~----~--~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG-T----K--IPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT-C----C--CCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh-C----C--CCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 455544332210 0 0 122456688999999999987655 4455778877643
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=1.3e-16 Score=187.89 Aligned_cols=309 Identities=14% Similarity=0.096 Sum_probs=158.2
Q ss_pred ccchhhhhccccceEEcCC------CCCCCcceeeeecCccccccC----hhhhcCCCCCcEEEccCCCcccccCccccC
Q 035887 509 WEDRRKISLMRNKIVILSK------PPACPRLLTLFLGINRLDTIS----SDFFDFMPSLKVLNLSKNRSLSQLPSGVSK 578 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~------~~~~~~Lr~L~l~~~~l~~~~----~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~ 578 (886)
++++++|++.+|.+..... ...+++|++|++++|.+..+. ...+..+++|++|++++| .+..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhh
Confidence 4566666666665432210 124566677776666554222 223455667777777766 55566666666
Q ss_pred ccCCCEEeccCCCc----cccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCc
Q 035887 579 LVSLQYLNLSETSI----KELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGS 654 (886)
Q Consensus 579 L~~L~~L~L~~~~i----~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 654 (886)
+.+|++|+++++.. ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++.+|....
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~~------------ 307 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLET------------ 307 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCCH------------
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCCH------------
Confidence 66677666654311 1333445555566666555542 3445543 5667777777777766321
Q ss_pred cchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEee----------cCCCCcccccc-ccccCccceEee
Q 035887 655 EILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRR----------CEDSKSWNILS-IADLKYLNKLDF 723 (886)
Q Consensus 655 ~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~-l~~l~~L~~L~i 723 (886)
......+.++++|+.|.+. +.... ..+.......++|+.|++.+ |.......... ...+++|++|++
T Consensus 308 ~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred HHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 1122335667777777776 22211 11122222335677777774 44333222111 223566666666
Q ss_pred cc--------------CCCcceEEeccc----cccCcc-------CCCCCCCccEEEeccCCc-ccc--Ccccc-cCCCC
Q 035887 724 AY--------------CTSLEVLRVNYA----EVRTTR-------EPYGFNSLQRVTIACCSR-LRE--VTWLV-FAPNL 774 (886)
Q Consensus 724 ~~--------------~~~l~~l~~~~~----~~~~~~-------~~~~~~~L~~L~L~~c~~-l~~--l~~l~-~l~~L 774 (886)
+. |++++.+.+.+. ..+..| ....+++|++|+|++|.. +.. +..++ .+++|
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 21 333333333211 100000 012366777777766543 221 22232 36777
Q ss_pred cEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccc--cccCcCCCCCccEEeeccCCCCCC
Q 035887 775 KIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKI--IFRNALPFPNLLELFVSECPNLKK 843 (886)
Q Consensus 775 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~--i~~~~~~~p~L~~L~i~~C~~L~~ 843 (886)
+.|+|++|. +.+.... .....+++|++|+|++|+ ++. ++.....+|+|+.|++++|+ ++.
T Consensus 466 ~~L~L~~n~-l~~~~~~------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 466 RWMLLGYVG-ESDEGLM------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CEEEECSCC-SSHHHHH------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred eEeeccCCC-CCHHHHH------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 777777764 3321100 123456888888888876 432 12122347888888888886 544
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=3.7e-15 Score=157.73 Aligned_cols=128 Identities=23% Similarity=0.257 Sum_probs=94.1
Q ss_pred ccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEecc
Q 035887 509 WEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLS 588 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 588 (886)
+++++.+++.++.+..+|... .+++++|++++|.+..+++..|..+++|++|+|++| .++.+|.. +.+.+|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECC
Confidence 446666777777766665432 367788888888777777666777888888888887 67776653 677788888888
Q ss_pred CCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 589 ETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 589 ~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
+|.++.+|..+..+++|++|++++|. +..+|.+.+..+++|++|++.+|..
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCC
Confidence 88888888777788888888888775 5667766677778888888877654
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=2.2e-15 Score=154.88 Aligned_cols=113 Identities=26% Similarity=0.320 Sum_probs=95.5
Q ss_pred ceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccC-CCccccch-
Q 035887 521 KIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSE-TSIKELPH- 597 (886)
Q Consensus 521 ~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~-~~i~~LP~- 597 (886)
.+..+|. -.++|++|++++|.+..+++..|.++++|++|++++|..++.+|. .++++.+|++|++++ |.++.+|.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3445555 345899999999999999988899999999999999933877775 789999999999998 89999985
Q ss_pred hhhccCCCcEeeccccccccccccccccCCCCCC---EEEeccC
Q 035887 598 ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLE---VLRMLDC 638 (886)
Q Consensus 598 ~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 638 (886)
.+..+++|++|++++|. +..+|. ++.+++|+ +|++.+|
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCC
Confidence 58899999999999996 677886 77888887 8888876
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=5.8e-15 Score=165.30 Aligned_cols=304 Identities=13% Similarity=0.056 Sum_probs=185.4
Q ss_pred CccccchhhHHHHHHHH-hc------CCceEEEE--EcCCCchhHHHHHHHHHhhccC--CCCCC-eEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCL-IQ------EQVGIIGL--HGMGGVGKTTLLTQINNKFLDA--PNNFE-VVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~F~-~~~wv~~s~~~~~~ 221 (886)
+.++||+.+++++.+++ .. ...+.+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57899999999999988 42 24566777 9999999999999999876210 01222 46788877777889
Q ss_pred HHHHHHHHHhCCCC---CCCHHHHHHHHHHHhc--cCcEEEEEccccch--------hhhhhccCCCCCCC--C--CCcE
Q 035887 222 SVQEKIGERIGFLE---NRSLEEKASGIFKILS--KKKFLLLLDDIWER--------VDLAKLGVPFPAIS--K--NASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~---~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~~~--~--~gs~ 284 (886)
.++..++.+++... ..+..++...+.+.+. +++++||+||++.. ..+..+...+.... + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 99999999997643 3345666777777775 67999999999753 22332222221011 2 3445
Q ss_pred EEEEcCChhhhhcc--------C-ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcC------Cchh
Q 035887 285 IVFTTRLENVCGLM--------E-TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECC------GLPL 349 (886)
Q Consensus 285 iiiTtR~~~v~~~~--------~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------glPl 349 (886)
||+||+...+...+ . -...+.+.+|+.++++++|...+.... ....--.+....|++.|+ |.|.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 78788765432111 1 112399999999999999987643111 001122567889999999 9997
Q ss_pred HHHHHHHHhc------CC--CCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCC--CCcc
Q 035887 350 ALITTGRAMS------GK--KTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFP--EDYH 419 (886)
Q Consensus 350 ai~~~~~~l~------~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp--~~~~ 419 (886)
.+..+..... .. -+.+.+..+...... ...+.-++..||+ +.+.++..++.+. .+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 6655443211 11 123333332221100 2334456788998 7898888888653 2335
Q ss_pred cCHHHHHHHHHhc--CCcCCccCcchhhhhhhHHHHHHHHhcccccC----Cc--eEEeehhH
Q 035887 420 IGKIELIECWIGE--GFLNGYEGINGVHNKGYYIIGVLVQACLLEVG----SD--YVKMHDVI 474 (886)
Q Consensus 420 i~~~~li~~w~a~--g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~----~~--~~~mHdlv 474 (886)
+....+...|-.. ...... .........+++.|.+.+++... ++ .+++|++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVK---PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCC---CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5565555444211 011100 11224456789999999999764 22 56666555
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=2.1e-15 Score=158.34 Aligned_cols=125 Identities=20% Similarity=0.371 Sum_probs=85.6
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 590 (886)
++..+.+..+.+........+++|+.|++.++.+..++. +..+++|++|++++| .++.++ .++.+.+|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC
Confidence 444555555444333333556777888887777666543 667788888888887 666654 6777788888888888
Q ss_pred Cccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 591 SIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 591 ~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
.++.+|.. ++++++|++|++++|. +..+|...++.+++|++|++.+|..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCcc
Confidence 77777655 5777888888888775 5666665567777788777776643
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=9.2e-15 Score=153.23 Aligned_cols=101 Identities=28% Similarity=0.394 Sum_probs=56.8
Q ss_pred ceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccCCCccccchh-hhccCCCcEeecc
Q 035887 534 LLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLNLE 611 (886)
Q Consensus 534 Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~ 611 (886)
+++++++++.++.+|..+ .+.|++|++++| .++.+|. .++++.+|++|++++|.++.+|.. +.++++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 445555555555555432 135666666666 4554443 455666666666666666666554 3556666666666
Q ss_pred ccccccccccccccCCCCCCEEEeccCC
Q 035887 612 YTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 612 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
+|. +..+|...+..+++|++|++.+|.
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSSC
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCCc
Confidence 654 455555445556666666665544
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=3.5e-16 Score=184.14 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=172.4
Q ss_pred cccchhhhhccccceEEc-----CC-CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcc---cccCccccC
Q 035887 508 KWEDRRKISLMRNKIVIL-----SK-PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSL---SQLPSGVSK 578 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~l-----~~-~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i---~~lp~~i~~ 578 (886)
.++++++|++..|.+..+ +. ..++++|++|++.+|.+..++ ..+..+++|+.|+++.+... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 456788888888876422 11 146899999999999887776 45888999999999854222 233445666
Q ss_pred ccCCCEEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccc-----------c
Q 035887 579 LVSLQYLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAE-----------D 647 (886)
Q Consensus 579 L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~-----------~ 647 (886)
+.+|+.|+++++....+|..+..+++|++|++++|......+..++..+++|++|++.++.....++. +
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 67777777776666666666677777777777776521111212245666666666652211000000 0
Q ss_pred ccc----------c-C-CccchHHHhcCCcCCceEEEEeccchhhhhhhcccccccccceEEEeec---CCCCcccc---
Q 035887 648 SVQ----------F-G-GSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRC---EDSKSWNI--- 709 (886)
Q Consensus 648 ~~~----------~-~-~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~~~~~~~--- 709 (886)
+.. . . .......-...+++|+.|.+..+.+... .+.......++|+.|++.++ ..++..+.
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 000 0 0 0000111123345555555543333211 01111111345666666532 23332211
Q ss_pred --ccccccCccceEeeccCCC-cceEEeccccccCccCCCCCCCccEEEeccCCccc-cCc-ccccCCCCcEEEEecCcc
Q 035887 710 --LSIADLKYLNKLDFAYCTS-LEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLR-EVT-WLVFAPNLKIVHIESCYD 784 (886)
Q Consensus 710 --~~l~~l~~L~~L~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~-~l~-~l~~l~~L~~L~L~~~~~ 784 (886)
..+..+++|++|+++.|.+ +....+... ...+++|+.|+|++|.... .++ .+..+++|+.|+|++|.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~- 499 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC- 499 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHH-------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-
Confidence 0133456666666655432 111001111 1247899999999985322 233 35788999999999997
Q ss_pred chhhccccccCCCCCCCCCCcccEEeccccccccccccC--cCCCCCccEEeeccC
Q 035887 785 MDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRN--ALPFPNLLELFVSEC 838 (886)
Q Consensus 785 l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~--~~~~p~L~~L~i~~C 838 (886)
+.+.... .....+|+|++|+|++|. ++..... ...+|.|....+...
T Consensus 500 l~~~~~~------~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 500 FSERAIA------AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CBHHHHH------HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcHHHHH------HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 4432110 123468999999999987 6543322 235777777666554
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=5.6e-15 Score=161.16 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=164.4
Q ss_pred eeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccCCCcc-ccchh-hhccCCCcEeecc
Q 035887 535 LTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETSIK-ELPHE-LKALTKLKCLNLE 611 (886)
Q Consensus 535 r~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~-~LP~~-i~~L~~L~~L~l~ 611 (886)
++++.+++.++.+|..+ .+++++|+|++| .++.+|. .|.++.+|++|+|++|.+. .+|.. +.+|++|+.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777778888888764 357888999988 7888875 5788889999999988874 46654 6788887765554
Q ss_pred ccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccccccc
Q 035887 612 YTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHS 691 (886)
Q Consensus 612 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~ 691 (886)
+++.+..+|.+.+..+++|++|++.+|.... ++. ...+.. .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~--------------~~~~~~------------------------~ 128 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPD--------------VHKIHS------------------------L 128 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCC--------------CTTCCB------------------------S
T ss_pred cCCcccccCchhhhhcccccccccccccccc-CCc--------------hhhccc------------------------c
Confidence 4445788877778888889988888776532 110 000111 1
Q ss_pred ccceEEEeecCCCCcccccccccc-CccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCcc--c
Q 035887 692 STRALELRRCEDSKSWNILSIADL-KYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVTW--L 768 (886)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l 768 (886)
.+..|.+.++..+..++...+..+ ..++.|++++. .++.++.... ...+|+.|.+.++..++.+|. +
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f---------~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF---------NGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSS---------TTEEEEEEECTTCTTCCCCCTTTT
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhc---------cccchhHHhhccCCcccCCCHHHh
Confidence 333444444444444433333443 45788888764 5665533322 346899999988878888874 7
Q ss_pred ccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCccEEeecc
Q 035887 769 VFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNLLELFVSE 837 (886)
Q Consensus 769 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~ 837 (886)
+.+++|+.|+|++| .++.++. ..|.+|+.|.+.++.+++.++. ...+++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~N-~l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHSLPS----------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTTS-CCCCCCS----------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCcccchhhcCCC-CcCccCh----------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 88999999999988 6776642 4588888998888888998874 55688999998863
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=9.7e-15 Score=153.05 Aligned_cols=127 Identities=23% Similarity=0.373 Sum_probs=108.8
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEeccC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSE 589 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~ 589 (886)
..+.+++.++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++| .++.+|.. +..+.+|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4567788888877776532 368999999999999999878999999999999999 78888765 48899999999999
Q ss_pred CCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 590 TSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 590 ~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
|.+..+|.. +..+++|++|++++|. +..+|...++.+++|++|++.+|..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcC
Confidence 999999865 6899999999999996 6778877688999999999998754
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=3e-14 Score=156.03 Aligned_cols=285 Identities=13% Similarity=0.081 Sum_probs=172.3
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-----CCHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-----MQLESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~ 228 (886)
+.++||++++++|.+ +.. +++.|+|++|+|||||++.+.+.. . . ..+|+.+... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 578999999999999 765 699999999999999999999886 2 2 2578887642 34455555554
Q ss_pred HHhC--------------C------C-----------CCCCHHHHHHHHHHHhccCcEEEEEccccchh-----hhhhcc
Q 035887 229 ERIG--------------F------L-----------ENRSLEEKASGIFKILSKKKFLLLLDDIWERV-----DLAKLG 272 (886)
Q Consensus 229 ~~l~--------------~------~-----------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l~ 272 (886)
+.+. . + ......++...+.+.-. ++++||+||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 0 0 01233444444444322 49999999996532 221111
Q ss_pred CCCCCCCCCCcEEEEEcCChhhhhc----------c-Cc-cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHH
Q 035887 273 VPFPAISKNASKIVFTTRLENVCGL----------M-ET-QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTV 340 (886)
Q Consensus 273 ~~~~~~~~~gs~iiiTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i 340 (886)
..+. ....+.++|+|++....... . +. ...+.+.+|+.+|+.+++...+...... ... ...|
T Consensus 162 ~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~----~~~i 235 (357)
T 2fna_A 162 AYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD----YEVV 235 (357)
T ss_dssp HHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC----HHHH
T ss_pred HHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc----HHHH
Confidence 1111 11246789999998653111 1 11 2578999999999999998865321111 112 1889
Q ss_pred HHHcCCchhHHHHHHHHhcCCCCHHHHHHHHHHHhhcccCCCCChhhhhhhHH-hhhc--CCCcchHHHHHhhhcCCCCC
Q 035887 341 AKECCGLPLALITTGRAMSGKKTPEEWNYAIEMLRRSASEFPGMEKEVYPLLK-FSYD--SLSSDVLRFCLLYCSLFPED 417 (886)
Q Consensus 341 ~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~cfl~~s~fp~~ 417 (886)
++.|+|+|+++..++..+....+...|.. .+-... ...+...+. +.+. .|++ ..+..+..+|.-+
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g~-- 303 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYA------KKLILKEFENFLHGREIARK-RYLNIMRTLSKCG-- 303 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHH------HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTTCB--
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHH------HHHHHHHHHHHhhccccccH-HHHHHHHHHHcCC--
Confidence 99999999999999887653333333321 110000 001111111 1111 5777 7899999998821
Q ss_pred cccCHHHHHHHHH-hcCCcCCccCcchhhhhhhHHHHHHHHhcccccCCc-eEEeehhHHHH
Q 035887 418 YHIGKIELIECWI-GEGFLNGYEGINGVHNKGYYIIGVLVQACLLEVGSD-YVKMHDVIRDM 477 (886)
Q Consensus 418 ~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~-~~~mHdlv~d~ 477 (886)
+...+....- ..|. .........+++.|.+.+++...+. +..-|++++++
T Consensus 304 ---~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 ---KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp ---CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred ---CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 4444432210 0110 0122456678999999999987666 44468888875
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.4e-15 Score=165.26 Aligned_cols=250 Identities=18% Similarity=0.180 Sum_probs=153.6
Q ss_pred cceeeeecCccccccChhhhcCC--CCCcEEEccCCCcccccCccccCccCCCEEeccCCCccc--cchhhhccCCCcEe
Q 035887 533 RLLTLFLGINRLDTISSDFFDFM--PSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKE--LPHELKALTKLKCL 608 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l--~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~--LP~~i~~L~~L~~L 608 (886)
.++.++++++.+. +..+..+ +++++|+++++ .+...+..+..+.+|++|++++|.+.. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777543 3445666 78999999988 677666667788999999999988763 78888889999999
Q ss_pred eccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccc
Q 035887 609 NLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQ 688 (886)
Q Consensus 609 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~ 688 (886)
++++|......|.. ++.+++|++|++.+|.... .......+.++++|+.|++.
T Consensus 124 ~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~-----------~~~l~~~~~~~~~L~~L~l~--------------- 176 (336)
T 2ast_B 124 SLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS-----------EFALQTLLSSCSRLDELNLS--------------- 176 (336)
T ss_dssp ECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC-----------HHHHHHHHHHCTTCCEEECC---------------
T ss_pred eCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC-----------HHHHHHHHhcCCCCCEEcCC---------------
Confidence 99988644455554 7788999999998874322 11122224445545444444
Q ss_pred cccccceEEEeecCCCCccc-cccccccC-ccceEeeccCC-CcceEE-eccccccCccCCCCCCCccEEEeccCCccc-
Q 035887 689 LHSSTRALELRRCEDSKSWN-ILSIADLK-YLNKLDFAYCT-SLEVLR-VNYAEVRTTREPYGFNSLQRVTIACCSRLR- 763 (886)
Q Consensus 689 ~~~~L~~L~l~~~~~~~~~~-~~~l~~l~-~L~~L~i~~~~-~l~~l~-~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~- 763 (886)
+|..+.... ...+..++ +|++|++++|. .+..-. +... ..+++|+.|+|++|..++
T Consensus 177 -----------~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--------~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 177 -----------WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--------RRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp -----------CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--------HHCTTCSEEECTTCTTCCG
T ss_pred -----------CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--------hhCCCCCEEeCCCCCcCCH
Confidence 432222210 01244556 77777777663 222100 1111 146788888888886443
Q ss_pred -cCcccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCC-CCccEEeeccCCCC
Q 035887 764 -EVTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPF-PNLLELFVSECPNL 841 (886)
Q Consensus 764 -~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~-p~L~~L~i~~C~~L 841 (886)
.++.++.+++|+.|+|++|..+..... ..+..+|+|+.|+|++| +..-... .+ .+|+.|++ +|+++
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~--i~~~~~~--~l~~~l~~L~l-~~n~l 305 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI--VPDGTLQ--LLKEALPHLQI-NCSHF 305 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS--SCTTCHH--HHHHHSTTSEE-SCCCS
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc--cCHHHHH--HHHhhCcceEE-ecccC
Confidence 245677888888888888864332211 13456888888888887 2221111 11 22445555 45566
Q ss_pred CCC
Q 035887 842 KKL 844 (886)
Q Consensus 842 ~~l 844 (886)
+..
T Consensus 306 ~~~ 308 (336)
T 2ast_B 306 TTI 308 (336)
T ss_dssp CCT
T ss_pred ccc
Confidence 664
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=1.2e-14 Score=153.07 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=126.0
Q ss_pred CcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccCCCccccc-hhhhccCCCcEee
Q 035887 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETSIKELP-HELKALTKLKCLN 609 (886)
Q Consensus 532 ~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~ 609 (886)
++|++|++++|.+..+++..|.++++|++|++++| .++.+|. .++++.+|++|++++|.++.+| ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46888888888887777766788888888888888 6666554 6778888888888888888776 4578888888888
Q ss_pred ccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccccc
Q 035887 610 LEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQL 689 (886)
Q Consensus 610 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~ 689 (886)
+++|. +..++...++.+++|++|++.+|.... ......+.++++|+.|+++
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~l~~~~~~l~~L~~L~Ls---------------- 157 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQS------------FKLPEYFSNLTNLEHLDLS---------------- 157 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC------------CCCCGGGGGCTTCCEEECC----------------
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCccce------------ecCchhhccCCCCCEEECC----------------
Confidence 88876 555665447788888888888776432 0011223444444444443
Q ss_pred ccccceEEEeecCCCCccccccccccCccc----eEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccC
Q 035887 690 HSSTRALELRRCEDSKSWNILSIADLKYLN----KLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREV 765 (886)
Q Consensus 690 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 765 (886)
++. +..++...+..+.+|+ .|+++++ .++.+..... ...+|+.|+|++|. ++.+
T Consensus 158 ----------~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~---------~~~~L~~L~L~~n~-l~~~ 215 (276)
T 2z62_A 158 ----------SNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF---------KEIRLKELALDTNQ-LKSV 215 (276)
T ss_dssp ----------SSC-CCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSS---------CSCCEEEEECCSSC-CSCC
T ss_pred ----------CCC-CCcCCHHHhhhhhhccccceeeecCCC-cccccCcccc---------CCCcccEEECCCCc-eeec
Confidence 332 1111111233333333 5666653 3443322221 23478888888874 4444
Q ss_pred cc--cccCCCCcEEEEecCc
Q 035887 766 TW--LVFAPNLKIVHIESCY 783 (886)
Q Consensus 766 ~~--l~~l~~L~~L~L~~~~ 783 (886)
+. +..+++|+.|+|++|+
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSC
T ss_pred CHhHhcccccccEEEccCCc
Confidence 42 5677888888887763
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=8e-15 Score=156.74 Aligned_cols=192 Identities=19% Similarity=0.273 Sum_probs=147.7
Q ss_pred cccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEE
Q 035887 506 VRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYL 585 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 585 (886)
...++++++|++.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.+| .++.+.+|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 34567899999999999888877889999999999999988877 889999999999999 788876 69999999999
Q ss_pred eccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc
Q 035887 586 NLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE 665 (886)
Q Consensus 586 ~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 665 (886)
++++|.++.+|. +..+++|++|++++|. +..+|. ++.+++|++|++.+|.... +..+..++
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~l~~l~ 173 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD---------------LTPLANLS 173 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC---------------CGGGTTCT
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCC---------------ChhhcCCC
Confidence 999999999975 9999999999999996 677876 8899999999999886532 11155555
Q ss_pred CCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCC
Q 035887 666 HLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREP 745 (886)
Q Consensus 666 ~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~ 745 (886)
+|+.|++..+.+ ..++ .+..+++|++|+++++. +..+. ..
T Consensus 174 ~L~~L~l~~n~l---------------------------~~~~--~l~~l~~L~~L~L~~N~-l~~~~----------~l 213 (308)
T 1h6u_A 174 KLTTLKADDNKI---------------------------SDIS--PLASLPNLIEVHLKNNQ-ISDVS----------PL 213 (308)
T ss_dssp TCCEEECCSSCC---------------------------CCCG--GGGGCTTCCEEECTTSC-CCBCG----------GG
T ss_pred CCCEEECCCCcc---------------------------CcCh--hhcCCCCCCEEEccCCc-cCccc----------cc
Confidence 555555443322 2222 24556777777777653 33221 12
Q ss_pred CCCCCccEEEeccCC
Q 035887 746 YGFNSLQRVTIACCS 760 (886)
Q Consensus 746 ~~~~~L~~L~L~~c~ 760 (886)
..+++|+.|++++|+
T Consensus 214 ~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCe
Confidence 257788888888774
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=7.8e-16 Score=165.13 Aligned_cols=248 Identities=19% Similarity=0.191 Sum_probs=164.7
Q ss_pred CCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccc--ccCcccc-------CccCCCEEeccCCCcc-ccchhh
Q 035887 530 ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLS--QLPSGVS-------KLVSLQYLNLSETSIK-ELPHEL 599 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~i~-~LP~~i 599 (886)
..++|+.|++.+|.+ .+|..+... |++|+|+++ .++ .+|..+. ++.+|++|++++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 456788888888887 777664443 888888888 554 3566555 6888999999988887 678776
Q ss_pred --hccCCCcEeeccccccccccccccccCC-----CCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEE
Q 035887 600 --KALTKLKCLNLEYTRYLQKIPRQLLCSF-----SGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSV 672 (886)
Q Consensus 600 --~~L~~L~~L~l~~~~~l~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 672 (886)
+.+++|++|++++|. +..+|.. ++.+ ++|++|++.+|..... ....+.++++|+.|++
T Consensus 116 ~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS-WATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF-------------SCEQVRVFPALSTLDL 180 (312)
T ss_dssp SSCCSCCCSEEEEESCB-CSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC-------------CTTTCCCCSSCCEEEC
T ss_pred HHhcCCCccEEEccCCC-CcchhHH-HHHHHHhhcCCCcEEEeeCCCCccc-------------hHHHhccCCCCCEEEC
Confidence 888889999998886 5555653 5555 8888888888765431 1122445555555555
Q ss_pred EeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCcc
Q 035887 673 TLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQ 752 (886)
Q Consensus 673 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 752 (886)
+.+.......+ .+...+..+++|++|+++++. ++.+..... .....+++|+
T Consensus 181 s~N~l~~~~~~-----------------------~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----~~~~~l~~L~ 231 (312)
T 1wwl_A 181 SDNPELGERGL-----------------------ISALCPLKFPTLQVLALRNAG-METPSGVCS-----ALAAARVQLQ 231 (312)
T ss_dssp CSCTTCHHHHH-----------------------HHHSCTTSCTTCCEEECTTSC-CCCHHHHHH-----HHHHTTCCCS
T ss_pred CCCCcCcchHH-----------------------HHHHHhccCCCCCEEECCCCc-CcchHHHHH-----HHHhcCCCCC
Confidence 43332110000 000122567888999988763 332110000 0001468999
Q ss_pred EEEeccCCccccC--cccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCcCCCCCc
Q 035887 753 RVTIACCSRLREV--TWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNALPFPNL 830 (886)
Q Consensus 753 ~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~p~L 830 (886)
.|+|++|...... +.+..+++|+.|+|++| .++.++. .+. ++|++|+|++ ..++.++. ...+++|
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~--------~~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L 298 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK--------GLP--AKLSVLDLSY-NRLDRNPS-PDELPQV 298 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS--------SCC--SEEEEEECCS-SCCCSCCC-TTTSCEE
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhh--------hcc--CCceEEECCC-CCCCCChh-HhhCCCC
Confidence 9999999544433 34667899999999999 5666543 222 8999999998 46888765 6678999
Q ss_pred cEEeeccCC
Q 035887 831 LELFVSECP 839 (886)
Q Consensus 831 ~~L~i~~C~ 839 (886)
++|++.+.+
T Consensus 299 ~~L~L~~N~ 307 (312)
T 1wwl_A 299 GNLSLKGNP 307 (312)
T ss_dssp EEEECTTCT
T ss_pred CEEeccCCC
Confidence 999998863
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.1e-14 Score=159.00 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=170.3
Q ss_pred hhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCE-EeccCC
Q 035887 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQY-LNLSET 590 (886)
Q Consensus 513 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~-L~L~~~ 590 (886)
+.+...++.+..+|... .+++++|++++|.++.+|+..|.++++|++|+|++|...+.+|. .|.++.+|+. +.+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34455556666666432 46899999999999999988899999999999999943455664 5778888775 556678
Q ss_pred Cccccch-hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCC-cCCc
Q 035887 591 SIKELPH-ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITL-EHLN 668 (886)
Q Consensus 591 ~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~ 668 (886)
++..+|. .+..+++|++|++++|. +..+|........++..|++.++.....++.. .+..+ ..++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~------------~f~~~~~~l~ 157 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERN------------SFVGLSFESV 157 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTT------------SSTTSBSSCE
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccccccc------------chhhcchhhh
Confidence 9998854 57899999999999986 67777654455667778888766544433221 12233 2456
Q ss_pred eEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCC
Q 035887 669 VLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGF 748 (886)
Q Consensus 669 ~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~ 748 (886)
.|.+..+.+..++.- .....+|+.|.+.++..+..++...+..+++|+.|+++++ .++.++. ..+
T Consensus 158 ~L~L~~N~i~~i~~~---~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-----------~~~ 222 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNS---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS-----------YGL 222 (350)
T ss_dssp EEECCSSCCCEECTT---SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-----------SSC
T ss_pred hhccccccccCCChh---hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-----------hhh
Confidence 666665555443321 1122467888887777777777656778888999998875 4554422 247
Q ss_pred CCccEEEeccCCccccCcccccCCCCcEEEEecC
Q 035887 749 NSLQRVTIACCSRLREVTWLVFAPNLKIVHIESC 782 (886)
Q Consensus 749 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~ 782 (886)
.+|++|.+.+|..++.+|.+..+++|+.+++.+.
T Consensus 223 ~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 8888998888888888888888899999888643
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=1.6e-14 Score=152.00 Aligned_cols=203 Identities=22% Similarity=0.206 Sum_probs=148.5
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~ 586 (886)
.++++|++.+|.+..++. ..++++|++|++++|.+..+++..|..+++|++|++++| .++.++ ..++++.+|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 479999999999987763 478899999999999999988878999999999999999 676665 6789999999999
Q ss_pred ccCCCccccch-hhhccCCCcEeeccccccccc--cccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcC
Q 035887 587 LSETSIKELPH-ELKALTKLKCLNLEYTRYLQK--IPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELIT 663 (886)
Q Consensus 587 L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (886)
+++|.+..++. .++++++|++|++++|. +.. +|.. ++.+++|++|++.+|..... ....+..+.+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~ 174 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI----------YCTDLRVLHQ 174 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE----------CGGGGHHHHT
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC----------CHHHhhhhhh
Confidence 99999998876 59999999999999997 454 5665 89999999999999876541 1123344444
Q ss_pred CcCCceEEEEeccchhhhhhhcccccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCcc
Q 035887 664 LEHLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTR 743 (886)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~ 743 (886)
|+.|.. .|+++++. +..++. ......+|+.|+++++. ++.++....
T Consensus 175 L~~l~l-------------------------~L~ls~n~-l~~~~~-~~~~~~~L~~L~L~~n~-l~~~~~~~~------ 220 (276)
T 2z62_A 175 MPLLNL-------------------------SLDLSLNP-MNFIQP-GAFKEIRLKELALDTNQ-LKSVPDGIF------ 220 (276)
T ss_dssp CTTCCE-------------------------EEECCSSC-CCEECT-TSSCSCCEEEEECCSSC-CSCCCTTTT------
T ss_pred ccccce-------------------------eeecCCCc-ccccCc-cccCCCcccEEECCCCc-eeecCHhHh------
Confidence 444431 23333332 122221 11223468888887753 544322221
Q ss_pred CCCCCCCccEEEeccCCc
Q 035887 744 EPYGFNSLQRVTIACCSR 761 (886)
Q Consensus 744 ~~~~~~~L~~L~L~~c~~ 761 (886)
..+++|+.|+|++|+.
T Consensus 221 --~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 221 --DRLTSLQKIWLHTNPW 236 (276)
T ss_dssp --TTCCSCCEEECCSSCB
T ss_pred --cccccccEEEccCCcc
Confidence 2578899999998754
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=3.6e-14 Score=150.10 Aligned_cols=198 Identities=20% Similarity=0.204 Sum_probs=137.7
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCccccchhhhccCCCcE
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIKELPHELKALTKLKC 607 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~ 607 (886)
.++++++++++.++.++.+|..++ +.+++|+|++| .++.+ |..+..+.+|++|+|++|.|+.+|.. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 456789999999998988887643 68999999999 66655 56788999999999999999988865 88999999
Q ss_pred eeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccc
Q 035887 608 LNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQ 687 (886)
Q Consensus 608 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~ 687 (886)
|++++|. +..+|.. +..+++|++|++.+|.... ++ ...+..++
T Consensus 82 L~Ls~N~-l~~l~~~-~~~l~~L~~L~l~~N~l~~-l~------------~~~~~~l~---------------------- 124 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLL-GQTLPALTVLDVSFNRLTS-LP------------LGALRGLG---------------------- 124 (290)
T ss_dssp EECCSSC-CSSCCCC-TTTCTTCCEEECCSSCCCC-CC------------SSTTTTCT----------------------
T ss_pred EECCCCc-CCcCchh-hccCCCCCEEECCCCcCcc-cC------------HHHHcCCC----------------------
Confidence 9999986 6788875 7889999999999876542 11 01123333
Q ss_pred ccccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCccccCc-
Q 035887 688 QLHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT- 766 (886)
Q Consensus 688 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~- 766 (886)
+|+.|+++++. +..++...+..+++|+.|+++++ .++.++.... ..+++|+.|+|++|. +..+|
T Consensus 125 ----~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~--------~~l~~L~~L~L~~N~-l~~ip~ 189 (290)
T 1p9a_G 125 ----ELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLL--------NGLENLDTLLLQENS-LYTIPK 189 (290)
T ss_dssp ----TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTT--------TTCTTCCEEECCSSC-CCCCCT
T ss_pred ----CCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCHHHh--------cCcCCCCEEECCCCc-CCccCh
Confidence 44444444442 22333334556777888888764 3443322221 246788888888774 44444
Q ss_pred ccccCCCCcEEEEecCc
Q 035887 767 WLVFAPNLKIVHIESCY 783 (886)
Q Consensus 767 ~l~~l~~L~~L~L~~~~ 783 (886)
.+..+++|+.|+|++|+
T Consensus 190 ~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCCCSEEECCSCC
T ss_pred hhcccccCCeEEeCCCC
Confidence 46666778888887664
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=4.7e-16 Score=176.99 Aligned_cols=311 Identities=19% Similarity=0.110 Sum_probs=169.7
Q ss_pred cchhhhhccccceEEc--CCC-CCCC----cceeeeecCcccccc----ChhhhcCCCCCcEEEccCCCcccc-cCcccc
Q 035887 510 EDRRKISLMRNKIVIL--SKP-PACP----RLLTLFLGINRLDTI----SSDFFDFMPSLKVLNLSKNRSLSQ-LPSGVS 577 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l--~~~-~~~~----~Lr~L~l~~~~l~~~----~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~ 577 (886)
+++++|++.+|.+... ... ..++ +|++|++++|.+... .+..+..+++|++|++++| .++. .+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~ 134 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLC 134 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHH
Confidence 4566666666654321 000 1122 566777766655421 1334566667777777766 3432 122221
Q ss_pred -----CccCCCEEeccCCCccc-----cchhhhccCCCcEeecccccccccccc----ccccCCCCCCEEEeccCCCccc
Q 035887 578 -----KLVSLQYLNLSETSIKE-----LPHELKALTKLKCLNLEYTRYLQKIPR----QLLCSFSGLEVLRMLDCGYSRK 643 (886)
Q Consensus 578 -----~L~~L~~L~L~~~~i~~-----LP~~i~~L~~L~~L~l~~~~~l~~lp~----~~i~~l~~L~~L~l~~~~~~~~ 643 (886)
.+.+|++|++++|.+.. ++..+..+++|++|++++|......+. .+...+++|++|++.+|.....
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 23457777777766653 455566667777777776652211111 1111345677777776654320
Q ss_pred ccccccccCCccchHHHhcCCcCCceEEEEeccchhh--hhhhc-ccccccccceEEEeecCCCCcccc----ccccccC
Q 035887 644 IAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGAL--QRLLS-CQQLHSSTRALELRRCEDSKSWNI----LSIADLK 716 (886)
Q Consensus 644 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~--~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~l~ 716 (886)
........+..+++|+.|+++.+.+... ..+.. .....++|+.|++++|. +..... ..+..++
T Consensus 215 ---------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 215 ---------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ---------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCT
T ss_pred ---------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCC
Confidence 0011344466778888888876655432 11111 11124678888888874 333211 1345578
Q ss_pred ccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCcccc----C-cccccCCCCcEEEEecCccchhhccc
Q 035887 717 YLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLRE----V-TWLVFAPNLKIVHIESCYDMDEIISA 791 (886)
Q Consensus 717 ~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~----l-~~l~~l~~L~~L~L~~~~~l~~i~~~ 791 (886)
+|++|+++++. +.......... .-....++|+.|+|++|..... + ..+..+++|+.|+|++| .+.+....
T Consensus 285 ~L~~L~Ls~n~-i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 359 (461)
T 1z7x_W 285 SLKELSLAGNE-LGDEGARLLCE---TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR 359 (461)
T ss_dssp TCCEEECTTCC-CHHHHHHHHHH---HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH
T ss_pred CcceEECCCCC-CchHHHHHHHH---HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH
Confidence 88888888753 32111110000 0011346999999999963322 2 24677899999999998 45544221
Q ss_pred cccCCCCCCCCCCcccEEecccccccc-----ccccCcCCCCCccEEeeccCC
Q 035887 792 WKLGEVPGLNPFAKLQYLRLQVLTKLK-----IIFRNALPFPNLLELFVSECP 839 (886)
Q Consensus 792 ~~~~~~~~~~~fp~L~~L~L~~~~~L~-----~i~~~~~~~p~L~~L~i~~C~ 839 (886)
..... -....++|++|+|++| .++ .++.....+++|++|++++|+
T Consensus 360 ~l~~~--l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 360 ELCQG--LGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHH--HTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHH--HcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 00000 0112689999999997 455 444444458999999999984
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=7.5e-15 Score=154.05 Aligned_cols=132 Identities=28% Similarity=0.372 Sum_probs=114.4
Q ss_pred cccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCE
Q 035887 506 VRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQY 584 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~ 584 (886)
...+.+++.+.+.++.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .++.+|.. ++.+.+|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 3456688899999998888887788999999999999888765 4789999999999999 77777654 689999999
Q ss_pred EeccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 585 LNLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 585 L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
|++++|.++.+|.. ++.+++|++|++++|. +..+|...++.+++|++|++.+|...
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC
Confidence 99999999988876 7999999999999996 67888776789999999999988653
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=1.3e-15 Score=179.24 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCCccEEEeccCCccccCccccc-CCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccccc--C
Q 035887 747 GFNSLQRVTIACCSRLREVTWLVF-APNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFR--N 823 (886)
Q Consensus 747 ~~~~L~~L~L~~c~~l~~l~~l~~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~--~ 823 (886)
.+++|+.|+|+++-.-..++.++. +++|+.|+|++|. +.+.... .....+|+|+.|+|++|+. ..... .
T Consensus 430 ~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~------~l~~~~~~L~~L~L~~n~~-~~~~~~~~ 501 (594)
T 2p1m_B 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH------HVLSGCDSLRKLEIRDCPF-GDKALLAN 501 (594)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH------HHHHHCTTCCEEEEESCSC-CHHHHHHT
T ss_pred hCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHH------HHHhcCCCcCEEECcCCCC-cHHHHHHH
Confidence 456788888865211112233444 7888888888875 3322110 0113578888888888774 33221 2
Q ss_pred cCCCCCccEEeeccCCC
Q 035887 824 ALPFPNLLELFVSECPN 840 (886)
Q Consensus 824 ~~~~p~L~~L~i~~C~~ 840 (886)
...+|+|+.|++++|+.
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 23478888888888865
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=4.2e-14 Score=149.70 Aligned_cols=120 Identities=23% Similarity=0.354 Sum_probs=65.6
Q ss_pred hhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCC
Q 035887 512 RRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETS 591 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~ 591 (886)
+.++.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++| .++.+|. ++++.+|++|++++|.
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc
Confidence 33344444333222222345556666666665555543 455666666666666 5555554 6666666666666666
Q ss_pred ccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCC
Q 035887 592 IKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 592 i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
++.+|. +..+++|++|++++|. +..++. +..+++|++|++.+|.
T Consensus 102 l~~~~~-l~~l~~L~~L~L~~n~-i~~~~~--l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 102 VKDLSS-LKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNK 145 (291)
T ss_dssp CCCGGG-GTTCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSC
T ss_pred CCCChh-hccCCCCCEEECCCCc-CCCChh--hcCCCCCCEEEccCCc
Confidence 666543 5666666666666664 344443 5555666666655543
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1e-14 Score=158.34 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=67.1
Q ss_pred CcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc--cCccccCccCCCEEeccCCCcc-ccchhhhccCCCcEe
Q 035887 532 PRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ--LPSGVSKLVSLQYLNLSETSIK-ELPHELKALTKLKCL 608 (886)
Q Consensus 532 ~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~L~~L~~L 608 (886)
++++.|++.+|.+...++. +..+++|++|++++| .++. +|..+..+++|++|++++|.+. ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4566677776665555444 345677777777777 4442 5666677777777777777666 556667777777777
Q ss_pred eccccccccc--cccccccCCCCCCEEEeccC
Q 035887 609 NLEYTRYLQK--IPRQLLCSFSGLEVLRMLDC 638 (886)
Q Consensus 609 ~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~ 638 (886)
++++|..+.. +|.. +..+++|++|++.+|
T Consensus 148 ~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 148 NLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred ECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 7777743342 4432 566777777777766
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=2.9e-15 Score=170.49 Aligned_cols=257 Identities=20% Similarity=0.148 Sum_probs=160.6
Q ss_pred cchhhhhccccceEEcCC---CCCCCcceeeeecCcccccc----ChhhhcCCCCCcEEEccCCCcccc-cCcccc-Ccc
Q 035887 510 EDRRKISLMRNKIVILSK---PPACPRLLTLFLGINRLDTI----SSDFFDFMPSLKVLNLSKNRSLSQ-LPSGVS-KLV 580 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~~----~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~-~L~ 580 (886)
+++++|++.++.+...+. ...+++|++|++++|.+... .+..+..+++|++|++++| .++. .+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 367788888877643221 24678999999999977632 1344778899999999999 5653 233332 344
Q ss_pred ----CCCEEeccCCCcc-----ccchhhhccCCCcEeeccccccccc----cccccccCCCCCCEEEeccCCCccccccc
Q 035887 581 ----SLQYLNLSETSIK-----ELPHELKALTKLKCLNLEYTRYLQK----IPRQLLCSFSGLEVLRMLDCGYSRKIAED 647 (886)
Q Consensus 581 ----~L~~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~~~~l~~----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 647 (886)
+|++|++++|.+. .+|..+.++++|++|++++|..... +........++|++|++.+|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---- 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA---- 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG----
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH----
Confidence 6999999999988 5788899999999999999973222 2222223467899999999875431
Q ss_pred ccccCCccchHHHhcCCcCCceEEEEeccchhh--hhhhccc-ccccccceEEEeecCCCCccc----cccccccCccce
Q 035887 648 SVQFGGSEILVEELITLEHLNVLSVTLKSFGAL--QRLLSCQ-QLHSSTRALELRRCEDSKSWN----ILSIADLKYLNK 720 (886)
Q Consensus 648 ~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~--~~l~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~ 720 (886)
........+..+++|+.|++..+.+... ..+.... ...++|+.|++++|.. .... ...+..+++|++
T Consensus 158 -----~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 158 -----SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp -----GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC-BTTHHHHHHHHHHHCTTCCE
T ss_pred -----HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC-cHHHHHHHHHHHHhCCCccE
Confidence 1112345567788999999987765432 1221111 1234899999998853 3221 113556788999
Q ss_pred EeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCcccc-----Cc-ccccCCCCcEEEEecC
Q 035887 721 LDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLRE-----VT-WLVFAPNLKIVHIESC 782 (886)
Q Consensus 721 L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~ 782 (886)
|+++++. +.......... .....+++|++|++++| .++. ++ .+..+++|+.|+|++|
T Consensus 232 L~Ls~n~-l~~~~~~~l~~---~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 232 LALGSNK-LGDVGMAELCP---GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp EECCSSB-CHHHHHHHHHH---HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred EeccCCc-CChHHHHHHHH---HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 9998762 22110000000 00013566777777766 3332 22 3445666666666666
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=4.7e-14 Score=163.91 Aligned_cols=122 Identities=24% Similarity=0.358 Sum_probs=78.9
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 590 (886)
.+..+.+..+.+..+.....+++|+.|++.+|.+..++. +..+++|++|+|++| .+..+|. ++.+.+|++|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC
Confidence 444555555444333333456667777777776666653 566777777777777 6666664 677777777777777
Q ss_pred CccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 591 SIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 591 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
.+..+| .+..|++|++|+|++|. +..+|. +..+++|+.|++++|..
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CCCCCh-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCcc
Confidence 777665 56777777777777775 455554 66777777777776643
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=1.2e-14 Score=161.10 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=50.4
Q ss_pred CCCcceeeeecCccccccCh----hhhcCCCCCcEEEccCCCccc----ccCccc-------cCccCCCEEeccCCCccc
Q 035887 530 ACPRLLTLFLGINRLDTISS----DFFDFMPSLKVLNLSKNRSLS----QLPSGV-------SKLVSLQYLNLSETSIKE 594 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~~~~~----~~~~~l~~Lr~L~Ls~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~i~~ 594 (886)
.+++|++|++++|.+..... ..+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 45667777777765543321 12456677777777765 332 223333 566677777777776664
Q ss_pred -----cchhhhccCCCcEeeccccc
Q 035887 595 -----LPHELKALTKLKCLNLEYTR 614 (886)
Q Consensus 595 -----LP~~i~~L~~L~~L~l~~~~ 614 (886)
+|..+.++++|++|++++|.
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC
Confidence 66666677777777777665
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=3.4e-14 Score=157.41 Aligned_cols=234 Identities=16% Similarity=0.161 Sum_probs=118.6
Q ss_pred hcCCCCCcEEEccCCCcccc-----cCccccCccCCCEEeccCCCcc----ccchhh-------hccCCCcEeecccccc
Q 035887 552 FDFMPSLKVLNLSKNRSLSQ-----LPSGVSKLVSLQYLNLSETSIK----ELPHEL-------KALTKLKCLNLEYTRY 615 (886)
Q Consensus 552 ~~~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~~i~----~LP~~i-------~~L~~L~~L~l~~~~~ 615 (886)
+..+++|++|+|++| .++. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|++++|..
T Consensus 28 l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 455666777777766 4432 3334556666777777665433 234333 4666677777766653
Q ss_pred cc----ccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCC---------cCCceEEEEeccch--hh
Q 035887 616 LQ----KIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITL---------EHLNVLSVTLKSFG--AL 680 (886)
Q Consensus 616 l~----~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~~L~~~~~~~~--~~ 680 (886)
.. .+|.. +..+++|++|++.+|......+ ......+..+ ++|+.|.+..+.+. .+
T Consensus 107 ~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~---------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 107 GPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG---------AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH---------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred CHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH---------HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 22 24443 5666677777776665432100 0111223333 56666666655542 23
Q ss_pred hhhhcccccccccceEEEeecCCCCcc-----ccccccccCccceEeeccCCCc----ceEEeccccccCccCCCCCCCc
Q 035887 681 QRLLSCQQLHSSTRALELRRCEDSKSW-----NILSIADLKYLNKLDFAYCTSL----EVLRVNYAEVRTTREPYGFNSL 751 (886)
Q Consensus 681 ~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~l~~l~~L~~L~i~~~~~l----~~l~~~~~~~~~~~~~~~~~~L 751 (886)
+.+.......++|+.|++++|.. ... ....+..+++|++|+++++.-- ..+ +... ..+++|
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l--------~~~~~L 246 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIAL--------KSWPNL 246 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHG--------GGCTTC
T ss_pred HHHHHHHHhCCCcCEEECcCCCC-CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHH--------ccCCCc
Confidence 32222223334666777666632 211 0013455666777777665310 111 1111 145677
Q ss_pred cEEEeccCCcccc----Cc-cc--ccCCCCcEEEEecCccchh-----hccccccCCCCCC-CCCCcccEEeccccc
Q 035887 752 QRVTIACCSRLRE----VT-WL--VFAPNLKIVHIESCYDMDE-----IISAWKLGEVPGL-NPFAKLQYLRLQVLT 815 (886)
Q Consensus 752 ~~L~L~~c~~l~~----l~-~l--~~l~~L~~L~L~~~~~l~~-----i~~~~~~~~~~~~-~~fp~L~~L~L~~~~ 815 (886)
+.|+|++|..... ++ .+ +.+++|+.|+|++|. +.. ++. .+ ..+|+|++|+|++++
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~--------~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT--------VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH--------HHHHHCTTCCEEECTTSB
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH--------HHHhcCCCceEEEccCCc
Confidence 7777777642221 12 23 336777777777763 333 322 22 346777777777643
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.1e-13 Score=144.25 Aligned_cols=169 Identities=23% Similarity=0.285 Sum_probs=132.3
Q ss_pred cccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEE
Q 035887 506 VRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYL 585 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 585 (886)
...+.+++.|++.+|.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.+| .++.+.+|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEE
Confidence 34567899999999998888877889999999999999988876 889999999999999 788877 49999999999
Q ss_pred eccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc
Q 035887 586 NLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE 665 (886)
Q Consensus 586 ~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 665 (886)
++++|.++.+| .+..+++|++|++++|. +..++. ++.+++|++|++.+|.... +..+..++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~---------------~~~l~~l~ 178 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD---------------IVPLAGLT 178 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC---------------CGGGTTCT
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc---------------chhhcCCC
Confidence 99999999985 68999999999999996 677754 8899999999999887543 11166677
Q ss_pred CCceEEEEeccchhhhhhhcccccccccceEEEeec
Q 035887 666 HLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRC 701 (886)
Q Consensus 666 ~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 701 (886)
+|+.|+++.+.+..++.+ ...++|+.|+++++
T Consensus 179 ~L~~L~L~~N~i~~l~~l----~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQ 210 (291)
T ss_dssp TCCEEECCSSCCCBCGGG----TTCTTCSEEEEEEE
T ss_pred ccCEEECCCCcCCCChhh----ccCCCCCEEECcCC
Confidence 777777765554433221 12234555555544
No 100
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.44 E-value=1.9e-13 Score=120.44 Aligned_cols=82 Identities=10% Similarity=0.128 Sum_probs=73.0
Q ss_pred hhhhhHHhhhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHHHH
Q 035887 9 ISCDALFNGCTNCTRRNAAYVSQLEDNLANLKTQLQKLIEAKDDVMTRVANAEQHQ-MRRLNKVQGWLSRVESVEAEVGE 87 (886)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~-~~~~~~~~~Wl~~l~~~~~~~ed 87 (886)
|++++++++|.+++.+|+..+.+++++++.|+++|+.|+++|.| |+.++ ...++.++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999988 55542 12358899999999999999999
Q ss_pred HHHhhHHhhh
Q 035887 88 LIRHSTQEID 97 (886)
Q Consensus 88 ~ld~~~~~~~ 97 (886)
++|+|.++..
T Consensus 74 ~iD~f~~~~~ 83 (115)
T 3qfl_A 74 VVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988775
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=2.8e-13 Score=157.36 Aligned_cols=170 Identities=24% Similarity=0.303 Sum_probs=140.7
Q ss_pred cccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEE
Q 035887 506 VRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYL 585 (886)
Q Consensus 506 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 585 (886)
...+.+++.|++.+|.+..++....+++|+.|++++|.+..+++ +..+++|++|+|++| .+..+| .++.+.+|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 44567899999999999888888889999999999999988877 889999999999999 888877 79999999999
Q ss_pred eccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc
Q 035887 586 NLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE 665 (886)
Q Consensus 586 ~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 665 (886)
+|++|.+..+| .+..|++|+.|+|++|. +..++. ++.+++|++|++++|.... .. .+..++
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~--------------~~-~l~~l~ 175 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD--------------IV-PLAGLT 175 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC--------------CG-GGTTCT
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC--------------ch-hhccCC
Confidence 99999999985 59999999999999996 677754 8999999999999987643 11 177788
Q ss_pred CCceEEEEeccchhhhhhhcccccccccceEEEeecC
Q 035887 666 HLNVLSVTLKSFGALQRLLSCQQLHSSTRALELRRCE 702 (886)
Q Consensus 666 ~L~~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 702 (886)
+|+.|++..+.+..++.+ ..+++|+.|+|++|+
T Consensus 176 ~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQE 208 (605)
T ss_dssp TCCEEECCSSCCCBCGGG----TTCTTCSEEECCSEE
T ss_pred CCCEEECcCCCCCCChHH----ccCCCCCEEEccCCc
Confidence 888888887766554332 224678888887764
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=2e-13 Score=149.58 Aligned_cols=116 Identities=12% Similarity=-0.002 Sum_probs=59.2
Q ss_pred ccceEEEeecCCCCccccc----ccccc-CccceEeeccCCCcceEEeccccccCccCC-CCCCCccEEEeccCCccccC
Q 035887 692 STRALELRRCEDSKSWNIL----SIADL-KYLNKLDFAYCTSLEVLRVNYAEVRTTREP-YGFNSLQRVTIACCSRLREV 765 (886)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~----~l~~l-~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~c~~l~~l 765 (886)
+|+.|++++|.- ...... .+..+ ++|++|+++++. +......... ... ...++|+.|+|++|. +...
T Consensus 168 ~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~-l~~~ 240 (362)
T 3goz_A 168 NVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELA----YIFSSIPNHVVSLNLCLNC-LHGP 240 (362)
T ss_dssp TCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH----HHHHHSCTTCCEEECCSSC-CCCC
T ss_pred cccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHH----HHHhcCCCCceEEECcCCC-CCcH
Confidence 566666666532 111111 22333 478888887753 3321000000 000 024588999998884 4433
Q ss_pred c------ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccc
Q 035887 766 T------WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLT 815 (886)
Q Consensus 766 ~------~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~ 815 (886)
+ .+..+++|+.|+|++|. +..+.......-...+..+++|+.|++++.+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2 24667889999998884 1111100000000245678888888888743
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=2.7e-13 Score=134.59 Aligned_cols=150 Identities=16% Similarity=0.200 Sum_probs=114.5
Q ss_pred ccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccc-ccCccccCccCCCEE
Q 035887 507 RKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLS-QLPSGVSKLVSLQYL 585 (886)
Q Consensus 507 ~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~-~lp~~i~~L~~L~~L 585 (886)
..++++++|++.+|.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .++ ..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 455678888888888877776678888999999888665554 3778888999999988 555 367788888899999
Q ss_pred eccCCCccc-cchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCC
Q 035887 586 NLSETSIKE-LPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITL 664 (886)
Q Consensus 586 ~L~~~~i~~-LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 664 (886)
++++|.+.. .|..++.+++|++|++++|..+..+|. +..+++|++|++.+|.... +..+..+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------------~~~l~~l 180 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------------YRGIEDF 180 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------------CTTGGGC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------------hHHhccC
Confidence 999888884 677788888999999988865677774 7888889999888876532 1135666
Q ss_pred cCCceEEEEecc
Q 035887 665 EHLNVLSVTLKS 676 (886)
Q Consensus 665 ~~L~~L~~~~~~ 676 (886)
++|+.|++..+.
T Consensus 181 ~~L~~L~l~~N~ 192 (197)
T 4ezg_A 181 PKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEEECBC-
T ss_pred CCCCEEEeeCcc
Confidence 677777666544
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=7.2e-13 Score=137.07 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=94.5
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSE 589 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~ 589 (886)
..+++++.++.+..+|... .++++.|++++|.+..+++..|.++++|++|+|++| .++.++ ..+..+.+|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCC
Confidence 3455667777666665432 267888888888887777777788888888888888 565554 3467788888888888
Q ss_pred CCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 590 TSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 590 ~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
|.++.+|.. +..+++|++|++++|. +..+|.+.++.+++|++|++.+|...
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCC
Confidence 888877754 6788888888888875 57777766677888888888877543
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=1.2e-12 Score=133.07 Aligned_cols=129 Identities=29% Similarity=0.446 Sum_probs=75.1
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 586 (886)
.++++|++.+|.+..++. ...+++|++|++++|.+..++...|..+++|++|+|++| .++.+|.. ++.+.+|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 455666666665554422 245566666666666665565555566666666666666 55555433 45566666666
Q ss_pred ccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 587 LSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 587 L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
|++|.|+.+|..+..+++|++|++++|. +..+|...+..+++|++|++.+|+.
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6666666666666666666666666654 4555554455566666666665543
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=8.3e-13 Score=141.35 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=74.4
Q ss_pred cceeeeecCccccccC-hh--hhcCCCCCcEEEccCCCcccccCccc--cCccCCCEEeccCCCcccc-c----hhhhcc
Q 035887 533 RLLTLFLGINRLDTIS-SD--FFDFMPSLKVLNLSKNRSLSQLPSGV--SKLVSLQYLNLSETSIKEL-P----HELKAL 602 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~-~~--~~~~l~~Lr~L~Ls~~~~i~~lp~~i--~~L~~L~~L~L~~~~i~~L-P----~~i~~L 602 (886)
.++.|.+..+.+.... .. -+..+++|++|++++|......|..+ +.+.+|++|++++|.+... | ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4566666665432110 00 02234669999999984334667776 8889999999999988742 2 345678
Q ss_pred CCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 603 TKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 603 ~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
++|++|++++|. +..+|...++.+++|++|++++|...
T Consensus 145 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 145 PGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp SCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred cCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCc
Confidence 899999999886 46666555788899999999888653
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=9.5e-14 Score=163.40 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=80.1
Q ss_pred cccchhhhhccccceEE-----cCCC-CCCCcceeeeecCccccccC----hhhhcCCCCCcEEEccCCCcccccCcccc
Q 035887 508 KWEDRRKISLMRNKIVI-----LSKP-PACPRLLTLFLGINRLDTIS----SDFFDFMPSLKVLNLSKNRSLSQLPSGVS 577 (886)
Q Consensus 508 ~~~~~r~l~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~l~~~~----~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~ 577 (886)
.++++++|++.+|.+.. ++.. ..+++|++|++.+|. ..+. ..++..+++|++|++++|..++.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 45678888888887654 2222 377899999999885 2222 22345679999999998866667777788
Q ss_pred CccCCCEEeccCCC-------ccccchhhhccCCCcEe-eccccccccccccccccCCCCCCEEEeccCC
Q 035887 578 KLVSLQYLNLSETS-------IKELPHELKALTKLKCL-NLEYTRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 578 ~L~~L~~L~L~~~~-------i~~LP~~i~~L~~L~~L-~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
.+++|++|+++.+. +..++..+.++++|+.| .+.+.. ...+|.. +..+++|++|++.+|.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~-~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAV-YSVCSRLTTLNLSYAT 300 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGG-HHHHTTCCEEECTTCC
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHH-HHhhCCCCEEEccCCC
Confidence 88888888865442 33455555566666655 333221 1233331 3345556666665554
No 108
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=2.2e-11 Score=134.62 Aligned_cols=285 Identities=13% Similarity=-0.026 Sum_probs=179.0
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccC----CCC-CCeEEEEEeCCCC-CHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDA----PNN-FEVVIWVVVSKDM-QLESV 223 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~-F~~~~wv~~s~~~-~~~~~ 223 (886)
+.++||+.+++++.+++.. +..+.+.|+|++|+||||+|+.+++..... ... ...++|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5789999999999887754 346789999999999999999999875211 011 3467888887777 88889
Q ss_pred HHHHHHHhCCCC----CCCHHHHHHHHHHHhccCcEEEEEccccchhh---hhh-ccCCCCCCCCCCcEEEEEcCChhhh
Q 035887 224 QEKIGERIGFLE----NRSLEEKASGIFKILSKKKFLLLLDDIWERVD---LAK-LGVPFPAISKNASKIVFTTRLENVC 295 (886)
Q Consensus 224 ~~~i~~~l~~~~----~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~-l~~~~~~~~~~gs~iiiTtR~~~v~ 295 (886)
+..++.++.... ..+..+....+.+.+..++.+|||||++.... .+. +...+. .. .+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~-~~-~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR-SD-ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT-SS-SCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc-CC-cceEEEEEECCCchH
Confidence 999998883211 33456677788888887777999999975432 122 111111 22 678899999875321
Q ss_pred hcc------CccceEEccCCChHHHHHHHHHHhcC--CcCCCCCChHHHHHHHHHHcC---Cchh-HHHHHHHHh--c--
Q 035887 296 GLM------ETQKKFKVECLGDNEAWELFLQKVGE--ETLGSHPDIPELAKTVAKECC---GLPL-ALITTGRAM--S-- 359 (886)
Q Consensus 296 ~~~------~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~l--~-- 359 (886)
..+ .-...+.+++++.++..++|...+.. .....+ .+..+.+++.|+ |.|. |+..+-.+. .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11238999999999999999988631 111112 345677888888 8887 333333322 2
Q ss_pred -CCCCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHHHHHHhcCCcCCc
Q 035887 360 -GKKTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELIECWIGEGFLNGY 438 (886)
Q Consensus 360 -~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 438 (886)
..-+.+.+..+++.... ..+..++..|++ +.+..+..++....+.++. ..+...--..| ..
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred CCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC--
Confidence 12466777766654321 335567788887 6666665555511101111 11111111122 11
Q ss_pred cCcchhhhhhhHHHHHHHHhcccccC
Q 035887 439 EGINGVHNKGYYIIGVLVQACLLEVG 464 (886)
Q Consensus 439 ~~~~~~~~~~~~~~~~L~~~sll~~~ 464 (886)
.........+++.|...++++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12335667889999999999763
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=3.1e-12 Score=132.28 Aligned_cols=153 Identities=29% Similarity=0.396 Sum_probs=128.1
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~ 586 (886)
.+++.|++.+|.+..++. ..++++|++|++++|.+..+++..|..+++|++|+|++| .++.+| ..++.+.+|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 578999999999877654 467899999999999999999888999999999999999 777776 4578999999999
Q ss_pred ccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc
Q 035887 587 LSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE 665 (886)
Q Consensus 587 L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 665 (886)
|++|.|+.+|.. +..+++|++|++++|. +..+|.+.++.+++|++|++.+|.... ++ ...+..++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~------------~~~~~~l~ 179 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS-VP------------HGAFDRLG 179 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-CC------------TTTTTTCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc-cC------------HHHHhCCC
Confidence 999999999877 6899999999999996 688888668999999999999987643 11 12356677
Q ss_pred CCceEEEEeccc
Q 035887 666 HLNVLSVTLKSF 677 (886)
Q Consensus 666 ~L~~L~~~~~~~ 677 (886)
+|+.+.+..+.+
T Consensus 180 ~L~~L~l~~N~~ 191 (251)
T 3m19_A 180 KLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSCCB
T ss_pred CCCEEEeeCCce
Confidence 777777765543
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.36 E-value=1.4e-11 Score=136.33 Aligned_cols=288 Identities=15% Similarity=0.075 Sum_probs=178.7
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCC---CCCCeEEEEEeCCCCCHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAP---NNFEVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~ 226 (886)
+.++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5789999999999998853 4567899999999999999999998762100 11235678888888889999999
Q ss_pred HHHHhCCCC---CCCHHHHHHHHHHHhc--cCcEEEEEccccchhh----hhhcc---CCCCCCC-CCCcEEEEEcCChh
Q 035887 227 IGERIGFLE---NRSLEEKASGIFKILS--KKKFLLLLDDIWERVD----LAKLG---VPFPAIS-KNASKIVFTTRLEN 293 (886)
Q Consensus 227 i~~~l~~~~---~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~----~~~l~---~~~~~~~-~~gs~iiiTtR~~~ 293 (886)
++.+++... ..+..+....+.+.+. +++.+||+||++.... .+.+. ....... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999997643 3346666777777774 4688999999975321 12221 1111011 34567788887653
Q ss_pred hhhcc-----Cc--cceEEccCCChHHHHHHHHHHhcC--CcCCCCCChHHHHHHHHHHcC---CchhHH-HHHHHHhc-
Q 035887 294 VCGLM-----ET--QKKFKVECLGDNEAWELFLQKVGE--ETLGSHPDIPELAKTVAKECC---GLPLAL-ITTGRAMS- 359 (886)
Q Consensus 294 v~~~~-----~~--~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPlai-~~~~~~l~- 359 (886)
....+ .. ...+.+++++.++..+++...+.. .....++ +..+.+++.++ |.|..+ ..+..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 21111 11 147899999999999999987632 1111222 34677888887 999443 33222221
Q ss_pred ----C--CCCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhc-CCCCCcccCHHHHHHHHHh-
Q 035887 360 ----G--KKTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCS-LFPEDYHIGKIELIECWIG- 431 (886)
Q Consensus 360 ----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~li~~w~a- 431 (886)
+ .-+.+.++.+++.... ..+.-++..|+. +.+..+...+ ++-....+....+.+....
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 1355666665544321 234556788888 5665555444 3322224545544443322
Q ss_pred ---cCCcCCccCcchhhhhhhHHHHHHHHhcccccC
Q 035887 432 ---EGFLNGYEGINGVHNKGYYIIGVLVQACLLEVG 464 (886)
Q Consensus 432 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 464 (886)
.| .. .........+++.|...++++..
T Consensus 322 ~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 12 11 12345677889999999999873
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=7.7e-13 Score=137.65 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=78.9
Q ss_pred ccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEecc
Q 035887 509 WEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLS 588 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 588 (886)
+.++..+.+..+.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .++.+|. ++.+.+|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 3455566666665554444455667777777777666665 2566677777777777 6666665 6677777777777
Q ss_pred CCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 589 ETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 589 ~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
+|.++.+|.... .+|++|++++|. +..+|. ++.+++|++|++.+|..
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCC
T ss_pred CCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcC
Confidence 777776664333 677777777764 455553 66777777777776654
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=2.1e-12 Score=129.35 Aligned_cols=123 Identities=31% Similarity=0.443 Sum_probs=80.5
Q ss_pred hhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEeccCCCcc
Q 035887 515 ISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSETSIK 593 (886)
Q Consensus 515 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i~ 593 (886)
+...++.+..+|. ...++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. +..+.+|++|++++|.++
T Consensus 12 v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 12 VECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC
Confidence 3344444443432 22456777777777777777666777777777777777 66666543 466777777777777777
Q ss_pred ccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 594 ELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 594 ~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
.+|.. +.++++|++|++++|. +..+|...+..+++|++|++.+|..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc
Confidence 77655 5677777777777775 5666665566677777777776543
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=3.5e-12 Score=128.82 Aligned_cols=148 Identities=20% Similarity=0.298 Sum_probs=93.0
Q ss_pred hhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCc
Q 035887 514 KISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSI 592 (886)
Q Consensus 514 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i 592 (886)
.+.+.++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++| .++.+ |..+..+.+|++|+|++|.|
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3445555555554321 256777777777777666666677777777777777 55544 56677777777777777777
Q ss_pred cccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEE
Q 035887 593 KELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLS 671 (886)
Q Consensus 593 ~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (886)
+.+|.. +..+++|++|++++|. +..++...+..+++|++|++.+|.... + ....+..+++|+.++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-~------------~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT-I------------AKGTFSPLRAIQTMH 158 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC-C------------CTTTTTTCTTCCEEE
T ss_pred CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE-E------------CHHHHhCCCCCCEEE
Confidence 777665 4667777777777775 455554456677777777777765543 1 111245566666666
Q ss_pred EEeccc
Q 035887 672 VTLKSF 677 (886)
Q Consensus 672 ~~~~~~ 677 (886)
+..+.+
T Consensus 159 L~~N~~ 164 (220)
T 2v9t_B 159 LAQNPF 164 (220)
T ss_dssp CCSSCE
T ss_pred eCCCCc
Confidence 665543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.8e-12 Score=133.42 Aligned_cols=149 Identities=21% Similarity=0.258 Sum_probs=127.2
Q ss_pred ccccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCE
Q 035887 505 EVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQY 584 (886)
Q Consensus 505 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 584 (886)
....+.+++.|++.+|.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.+|.... .+|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--CcccE
Confidence 345667899999999999888877889999999999999998887 889999999999999 8888886444 99999
Q ss_pred EeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCC
Q 035887 585 LNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITL 664 (886)
Q Consensus 585 L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 664 (886)
|++++|.++.+| .+.++++|++|++++|. +..+|. ++.+++|++|++.+|.... . ..+..+
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~----------~-----~~l~~l 171 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN----------T-----GGLTRL 171 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB----------C-----TTSTTC
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc----------h-----HHhccC
Confidence 999999999986 59999999999999997 677874 8999999999999987643 1 346777
Q ss_pred cCCceEEEEeccc
Q 035887 665 EHLNVLSVTLKSF 677 (886)
Q Consensus 665 ~~L~~L~~~~~~~ 677 (886)
++|+.|++..+.+
T Consensus 172 ~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 172 KKVNWIDLTGQKC 184 (263)
T ss_dssp CCCCEEEEEEEEE
T ss_pred CCCCEEeCCCCcc
Confidence 8888888776554
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=2.2e-12 Score=130.29 Aligned_cols=130 Identities=25% Similarity=0.361 Sum_probs=112.4
Q ss_pred cchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEe
Q 035887 510 EDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLN 586 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 586 (886)
.+++.|++.+|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. +..+.+|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 578999999999887764 467899999999999998887777999999999999999 88888865 58899999999
Q ss_pred ccCCCccccc-hhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 587 LSETSIKELP-HELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 587 L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
|++|.|+.++ ..+..+++|++|++++|. +..+|.+.+..+++|++|++.+|+..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999999884 568999999999999996 67788777888999999999988753
No 116
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=7.4e-11 Score=130.61 Aligned_cols=286 Identities=13% Similarity=0.077 Sum_probs=179.5
Q ss_pred CccccchhhHHHHHHHHhc----CCce--EEEEEcCCCchhHHHHHHHHHhhccCCCC-CCeEEEEEeCCCCCHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ----EQVG--IIGLHGMGGVGKTTLLTQINNKFLDAPNN-FEVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~ 226 (886)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++.. ... -..++|+.++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5789999999999998875 2334 89999999999999999999887 222 235778888888888899999
Q ss_pred HHHHhCCCC---CCCHHHHHHHHHHHhc--cCcEEEEEccccc--hhhhhhccCCCCCCCC---CCcEEEEEcCChhhhh
Q 035887 227 IGERIGFLE---NRSLEEKASGIFKILS--KKKFLLLLDDIWE--RVDLAKLGVPFPAISK---NASKIVFTTRLENVCG 296 (886)
Q Consensus 227 i~~~l~~~~---~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~---~gs~iiiTtR~~~v~~ 296 (886)
++..++... ..+..+....+...+. +++.+||+||++. ...+..+...+..... .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 999887543 3356666667766665 5688999999975 2333333222210111 4667888887764432
Q ss_pred ccC-------ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHc---------CCchhHHHHHHHHhc-
Q 035887 297 LME-------TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKEC---------CGLPLALITTGRAMS- 359 (886)
Q Consensus 297 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPlai~~~~~~l~- 359 (886)
.+. ....+.+.+++.++..+++...+.... ....--.+..+.+++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 221 123699999999999999988764211 01112246778899999 788765544332211
Q ss_pred -----CC--CCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCC---CCcccCHHHHHHHH
Q 035887 360 -----GK--KTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFP---EDYHIGKIELIECW 429 (886)
Q Consensus 360 -----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~li~~w 429 (886)
+. -+.+....+.+... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 11 12233333222211 1122334566777 6777776666543 22145555555544
Q ss_pred Hh----cCCcCCccCcchhhhhhhHHHHHHHHhccccc
Q 035887 430 IG----EGFLNGYEGINGVHNKGYYIIGVLVQACLLEV 463 (886)
Q Consensus 430 ~a----~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~ 463 (886)
-. .|.. + -.......++++|..++++..
T Consensus 319 ~~~~~~~~~~-~-----~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 319 KIVCEEYGER-P-----RVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHHHTTCC-C-----CCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHcCCC-C-----CCHHHHHHHHHHHHhCCCeEE
Confidence 32 1211 1 123456678999999999976
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=4.2e-12 Score=127.17 Aligned_cols=131 Identities=29% Similarity=0.457 Sum_probs=116.1
Q ss_pred ccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEE
Q 035887 509 WEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYL 585 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L 585 (886)
.+++++|++.+|.+..++. ...+++|++|++.+|.+..++...|..+++|++|++++| .++.+|.. ++.+.+|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 4589999999999887765 358899999999999999999888899999999999999 78877755 6899999999
Q ss_pred eccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 586 NLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 586 ~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
++++|.++.+|.. +.++++|++|++++|. +..+|...+..+++|++|++.+|...
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 9999999999876 7899999999999996 67888877889999999999988654
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=139.84 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=34.9
Q ss_pred cccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCc
Q 035887 691 SSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSR 761 (886)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 761 (886)
++|+.|+++++. +..++. .+ .++|+.|+++++ .++.+ +....+++|+.|+|++|+.
T Consensus 251 ~~L~~L~Ls~N~-l~~lp~-~~--~~~L~~L~Ls~N-~l~~~----------~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAG-LEQVPK-GL--PAKLRVLDLSSN-RLNRA----------PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSC-CCSCCS-CC--CSCCSCEECCSC-CCCSC----------CCTTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCC-CCchhh-hh--cCCCCEEECCCC-cCCCC----------chhhhCCCccEEECcCCCC
Confidence 467777777664 334432 22 268888888765 34433 1123678999999998853
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=3.8e-12 Score=126.22 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=118.6
Q ss_pred EEcCcccCCCcccccccchhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCccc-cc
Q 035887 494 VSAGVELTKPPEVRKWEDRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLS-QL 572 (886)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~-~l 572 (886)
...+......+....++++++|++.+|.+..++....+++|++|++++|.+....+..+..+++|++|++++| .++ ..
T Consensus 50 ~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~ 128 (197)
T 4ezg_A 50 TLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSI 128 (197)
T ss_dssp EEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGG
T ss_pred eccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHh
Confidence 3334444444566777899999999998877777788999999999999887644445889999999999999 665 47
Q ss_pred CccccCccCCCEEeccCCC-ccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCC
Q 035887 573 PSGVSKLVSLQYLNLSETS-IKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 573 p~~i~~L~~L~~L~L~~~~-i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 640 (886)
|..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++.+|..
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC--
T ss_pred HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCccc
Confidence 7889999999999999997 99998 79999999999999997 677774 88999999999998864
No 120
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=2e-11 Score=134.99 Aligned_cols=289 Identities=14% Similarity=0.072 Sum_probs=174.2
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
+.++||+.+++++.+++.. .....+.|+|++|+||||||+.+++........-..++|+.+....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999998873 456789999999999999999999876211110235778887777778888888888
Q ss_pred HhCCCC---CCCHHHHHHHHHHHhcc--CcEEEEEccccchh------hhhhccCCCCCCCCCCcEEEEEcCChhhhhcc
Q 035887 230 RIGFLE---NRSLEEKASGIFKILSK--KKFLLLLDDIWERV------DLAKLGVPFPAISKNASKIVFTTRLENVCGLM 298 (886)
Q Consensus 230 ~l~~~~---~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~~~~~~~~~gs~iiiTtR~~~v~~~~ 298 (886)
+++... ..+..+....+.+.+.. ++.+||+|+++... .+..+...+......+..+|+||+.......+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 876532 33456666667776653 48999999997532 22222211110123456678888766432222
Q ss_pred Cc-------cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcC---CchhHHHHH-HHHhc-----C--
Q 035887 299 ET-------QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECC---GLPLALITT-GRAMS-----G-- 360 (886)
Q Consensus 299 ~~-------~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPlai~~~-~~~l~-----~-- 360 (886)
.. ...+.+++++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+..+ ..+.. +
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 14799999999999999998653211 011222456777888887 999854332 22211 1
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCCC-C-cccCHHHHHHHHH--h--cCC
Q 035887 361 KKTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFPE-D-YHIGKIELIECWI--G--EGF 434 (886)
Q Consensus 361 ~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~i~~~~li~~w~--a--~g~ 434 (886)
.-+.+.++.+++... ...+.-.+..+|. +.+..+..++.+-+ + ..+....+.+.+. + .|
T Consensus 259 ~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp SCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred ccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 135555555544322 1245556777887 56665555552211 1 1233333322221 1 11
Q ss_pred cCCccCcchhhhhhhHHHHHHHHhccccc
Q 035887 435 LNGYEGINGVHNKGYYIIGVLVQACLLEV 463 (886)
Q Consensus 435 i~~~~~~~~~~~~~~~~~~~L~~~sll~~ 463 (886)
+. .-.......+++.|...++++.
T Consensus 324 ~~-----~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 VE-----AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CC-----CCCHHHHHHHHHHHHHHTSEEE
T ss_pred CC-----CCCHHHHHHHHHHHHhCCCEEE
Confidence 11 1122456678999999999965
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=4.5e-12 Score=128.03 Aligned_cols=149 Identities=18% Similarity=0.303 Sum_probs=86.7
Q ss_pred hhhhccccceEEcCCCCCCCcceeeeecCccccccC-hhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccCC
Q 035887 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTIS-SDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSET 590 (886)
Q Consensus 513 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~-~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~ 590 (886)
+.+++.++.+..+|.. -...+++|++++|.+..++ ...|..+++|++|+|++| .++.+|. .++.+.+|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 3455555555555432 2345566666666666553 344566666777777666 5555543 5666667777777777
Q ss_pred Cccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 591 SIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 591 ~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
.++.+|.. +..+++|++|++++|. +..++...+..+++|++|++.+|..... ....+..+++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~ 157 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV-------------APGAFDTLHSLST 157 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB-------------CTTTTTTCTTCCE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE-------------CHHHhcCCCCCCE
Confidence 66666544 6666677777776665 4445433466666677777666654331 1122455666666
Q ss_pred EEEEeccc
Q 035887 670 LSVTLKSF 677 (886)
Q Consensus 670 L~~~~~~~ 677 (886)
+++..+.+
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 66655443
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=5.2e-12 Score=127.55 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=109.9
Q ss_pred cchhhhhccccceEEcCC---CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEE
Q 035887 510 EDRRKISLMRNKIVILSK---PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYL 585 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L 585 (886)
..++.|++.+|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++| .++.+|. .++.+.+|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence 467889999999877643 357899999999999999888877999999999999999 7777665 48899999999
Q ss_pred eccCCCcccc-chhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 586 NLSETSIKEL-PHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 586 ~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
+|++|.|+.+ |..+..+++|++|++++|. +..+++..+..+++|++|++.+|+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999988 5668999999999999986 56675555889999999999988764
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=1.8e-11 Score=140.56 Aligned_cols=92 Identities=27% Similarity=0.448 Sum_probs=51.2
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeeccc
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLEY 612 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~~ 612 (886)
+|++|++++|.+..+|..+ +++|++|+|++| .++.+| +.+.+|++|++++|.|+.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 4555666665555555442 245666666666 555555 335566666666666666655 443 566666665
Q ss_pred cccccccccccccCCCCCCEEEeccCC
Q 035887 613 TRYLQKIPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 613 ~~~l~~lp~~~i~~l~~L~~L~l~~~~ 639 (886)
|. +..+|. .+++|++|++++|.
T Consensus 130 N~-l~~lp~----~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 130 NQ-LTMLPE----LPALLEYINADNNQ 151 (571)
T ss_dssp SC-CSCCCC----CCTTCCEEECCSSC
T ss_pred Cc-CCCCCC----cCccccEEeCCCCc
Confidence 54 344554 35556666665554
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=2.6e-12 Score=121.12 Aligned_cols=121 Identities=27% Similarity=0.237 Sum_probs=59.9
Q ss_pred chhhhhccccceE--EcCCC-CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc-cCccccCccCCCEEe
Q 035887 511 DRRKISLMRNKIV--ILSKP-PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ-LPSGVSKLVSLQYLN 586 (886)
Q Consensus 511 ~~r~l~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~~L~~L~~L~ 586 (886)
++++|++.+|.+. .++.. ..+++|++|++++|.+..+ ..+..+++|++|++++| .++. +|..++.+.+|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEE
Confidence 4555555555544 33332 4455555555555554444 22445555555555555 3443 444444455555555
Q ss_pred ccCCCccccc--hhhhccCCCcEeecccccccccccc---ccccCCCCCCEEEe
Q 035887 587 LSETSIKELP--HELKALTKLKCLNLEYTRYLQKIPR---QLLCSFSGLEVLRM 635 (886)
Q Consensus 587 L~~~~i~~LP--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l 635 (886)
+++|.++.+| ..++.+++|++|++++|. +..+|. ..++.+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 5555555443 445555555555555553 344443 23445555555544
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=2.5e-12 Score=123.92 Aligned_cols=125 Identities=26% Similarity=0.229 Sum_probs=64.2
Q ss_pred chhhhhccccceE--EcCCC-CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccc-cCccccCccCCCEEe
Q 035887 511 DRRKISLMRNKIV--ILSKP-PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQ-LPSGVSKLVSLQYLN 586 (886)
Q Consensus 511 ~~r~l~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~~L~~L~~L~ 586 (886)
++++|++.+|.+. .++.. ..+++|++|++++|.+..+ ..+..+++|++|++++| .++. +|..++++++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEe
Confidence 4555555555554 44433 3455555555555555444 22455555555555555 3443 444444455555555
Q ss_pred ccCCCccccc--hhhhccCCCcEeecccccccccccc---ccccCCCCCCEEEeccCC
Q 035887 587 LSETSIKELP--HELKALTKLKCLNLEYTRYLQKIPR---QLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 587 L~~~~i~~LP--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~ 639 (886)
+++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++.+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5555555544 445555555555555554 344443 234555555555555544
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=7.3e-12 Score=127.35 Aligned_cols=148 Identities=22% Similarity=0.288 Sum_probs=119.6
Q ss_pred hhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEeccCC
Q 035887 512 RRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSET 590 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~ 590 (886)
...++..++.+..+|.. -.++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. +..+.+|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 34566666777666653 3489999999999999998888999999999999999 78888754 689999999999999
Q ss_pred Cccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCce
Q 035887 591 SIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNV 669 (886)
Q Consensus 591 ~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (886)
.|+.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++.+|.... ++ ...+..+++|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~-~~------------~~~~~~l~~L~~ 163 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKS-IP------------HGAFDRLSSLTH 163 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCC-CC------------TTTTTTCTTCCE
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCc-cC------------HHHHhCCCCCCE
Confidence 99999876 6899999999999996 6899987 7999999999999987543 11 123566777777
Q ss_pred EEEEecc
Q 035887 670 LSVTLKS 676 (886)
Q Consensus 670 L~~~~~~ 676 (886)
+.+..+.
T Consensus 164 L~l~~N~ 170 (229)
T 3e6j_A 164 AYLFGNP 170 (229)
T ss_dssp EECTTSC
T ss_pred EEeeCCC
Confidence 7766443
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=5.2e-12 Score=138.14 Aligned_cols=127 Identities=27% Similarity=0.367 Sum_probs=61.7
Q ss_pred chhhhhccccceEEcCCC--C-CCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEe
Q 035887 511 DRRKISLMRNKIVILSKP--P-ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLN 586 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~ 586 (886)
.++.|++++|.+..++.. . .+++|++|++++|.+..+++..|..+++|++|+|++| .++.+|. .+..+.+|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEE
Confidence 344555555555444332 1 4455555555555555555444555555555555555 4444432 344555555555
Q ss_pred ccCCCcccc-chhhhccCCCcEeeccccccccccccccc---cCCCCCCEEEeccCC
Q 035887 587 LSETSIKEL-PHELKALTKLKCLNLEYTRYLQKIPRQLL---CSFSGLEVLRMLDCG 639 (886)
Q Consensus 587 L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~ 639 (886)
|++|.|..+ |..+..+++|++|+|++|. +..+|...+ ..+++|++|++.+|.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 555555544 2335555555555555553 444554433 345555555555444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=2.7e-12 Score=124.79 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=88.4
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhh-hccCCCcE
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHEL-KALTKLKC 607 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i-~~L~~L~~ 607 (886)
.++++|++|++++|.+..++. +....++|++|++++| .++.+ ..++.+.+|++|++++|.|+.+|..+ +.+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 456677777777777766643 2333347888888877 66666 46777778888888888777777654 77778888
Q ss_pred eecccccccccccc-ccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccc
Q 035887 608 LNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSF 677 (886)
Q Consensus 608 L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~ 677 (886)
|++++|. +..+|. ..++.+++|++|++.+|.... ++ ......+..+++|+.+++..+..
T Consensus 93 L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~---------~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN-KK---------HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG-ST---------THHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC-cH---------hHHHHHHHHCCccceeCCCcCCH
Confidence 8887775 466665 226677778888887776542 11 11122355666677776665554
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=2.2e-12 Score=141.27 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=148.6
Q ss_pred CCcceeeeecCccccccCh----hhhcCCC-CCcEEEccCCCccccc-CccccCc-----cCCCEEeccCCCccccchh-
Q 035887 531 CPRLLTLFLGINRLDTISS----DFFDFMP-SLKVLNLSKNRSLSQL-PSGVSKL-----VSLQYLNLSETSIKELPHE- 598 (886)
Q Consensus 531 ~~~Lr~L~l~~~~l~~~~~----~~~~~l~-~Lr~L~Ls~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~i~~LP~~- 598 (886)
.++|++|++++|.+...+. ..+..++ +|++|+|++| .++.. +..++.+ .+|++|+|++|.+...+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4558899999888877776 5677787 8999999998 66543 5556654 8899999999988855432
Q ss_pred ----hhcc-CCCcEeecccccccccccccc----ccC-CCCCCEEEeccCCCcccccccccccCCccchHHHhcCCc-CC
Q 035887 599 ----LKAL-TKLKCLNLEYTRYLQKIPRQL----LCS-FSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLE-HL 667 (886)
Q Consensus 599 ----i~~L-~~L~~L~l~~~~~l~~lp~~~----i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L 667 (886)
+..+ ++|++|++++|. +...+... +.. .++|++|++++|..... ........+..++ +|
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK---------SSDELIQILAAIPANV 169 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS---------CHHHHHHHHHTSCTTC
T ss_pred HHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH---------HHHHHHHHHhcCCccc
Confidence 4444 789999999886 45554322 233 36899999988865431 1112334455565 88
Q ss_pred ceEEEEeccchhhh--hhhcccccc-cccceEEEeecCCCCccccc----cccc-cCccceEeeccCCCcceEEeccccc
Q 035887 668 NVLSVTLKSFGALQ--RLLSCQQLH-SSTRALELRRCEDSKSWNIL----SIAD-LKYLNKLDFAYCTSLEVLRVNYAEV 739 (886)
Q Consensus 668 ~~L~~~~~~~~~~~--~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~l~~-l~~L~~L~i~~~~~l~~l~~~~~~~ 739 (886)
+.|+++.+.+.... .+....... ++|+.|++++|. +...... .+.. .++|++|+++++ .+.........
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~- 246 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLK- 246 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHH-
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHH-
Confidence 88888766654322 122121222 488999998875 2221111 2333 358999999886 34422211110
Q ss_pred cCccCCCCCCCccEEEeccCCc-------cccCc-ccccCCCCcEEEEecCc
Q 035887 740 RTTREPYGFNSLQRVTIACCSR-------LREVT-WLVFAPNLKIVHIESCY 783 (886)
Q Consensus 740 ~~~~~~~~~~~L~~L~L~~c~~-------l~~l~-~l~~l~~L~~L~L~~~~ 783 (886)
.....+++|+.|+|++|.. +..++ .+..+++|+.|++++|.
T Consensus 247 ---~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 ---LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp ---HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ---HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 1113578899999999851 11111 35677889999999884
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=1.4e-11 Score=141.44 Aligned_cols=114 Identities=25% Similarity=0.359 Sum_probs=94.1
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 590 (886)
+++.|++.+|.+..+|... +++|++|++++|.+..+| ..+++|++|+|++| .++.+|. +++ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 6778888888887776533 478999999999888887 34789999999999 7888887 765 8999999999
Q ss_pred CccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 591 SIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 591 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
.|+.+|. .+++|++|++++|. +..+|. .+++|++|++.+|...
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCC
Confidence 9999987 68999999999986 677876 5788999999988654
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=2e-11 Score=117.61 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=104.4
Q ss_pred CCCcceeeeecCcccc--ccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccc-cchhhhccCCCc
Q 035887 530 ACPRLLTLFLGINRLD--TISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKE-LPHELKALTKLK 606 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~--~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-LP~~i~~L~~L~ 606 (886)
..++|++|++++|.+. .+|.. +..+++|++|++++| .++.+ ..++.+.+|++|++++|.+.. +|..+.++++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4578999999999887 66654 788999999999999 78777 689999999999999999998 788888899999
Q ss_pred Eeecccccccccccc-ccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEecc
Q 035887 607 CLNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKS 676 (886)
Q Consensus 607 ~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~ 676 (886)
+|++++|. +..+|. ..++.+++|++|++.+|.... ........+..+++|+.|++..+.
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~----------~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTN----------LNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGT----------STTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcc----------hHHHHHHHHHhCccCcEecCCCCC
Confidence 99999996 677763 338899999999999887643 111112345666666666655443
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=2.3e-11 Score=132.97 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=133.2
Q ss_pred hhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhc-CCCCCcEEEccCCCcccccC-ccccCccCCCEEeccC
Q 035887 512 RRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFD-FMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSE 589 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~-~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~ 589 (886)
.+.+++.++.+..+|.. -.+.++.|++++|.+..++...|. .+++|++|+|++| .++.+| ..+.++.+|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 35677777777777653 245799999999999999888787 9999999999999 787776 4699999999999999
Q ss_pred CCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCc
Q 035887 590 TSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLN 668 (886)
Q Consensus 590 ~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 668 (886)
|.|+.+|.. +..+++|++|+|++|. +..++...+..+++|++|++.+|.... ++. ..+..+.++++|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~---------~~~~~~~~l~~L~ 166 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR-FPV---------ELIKDGNKLPKLM 166 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCS-CCG---------GGTC----CTTCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCe-eCH---------HHhcCcccCCcCC
Confidence 999999775 8999999999999997 677766668999999999999987654 221 1222236788999
Q ss_pred eEEEEeccchhhhh--hhcccccccccceEEEeecC
Q 035887 669 VLSVTLKSFGALQR--LLSCQQLHSSTRALELRRCE 702 (886)
Q Consensus 669 ~L~~~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~ 702 (886)
.|+++.+.+..++. +..... ..++.|++.+++
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~--~~l~~l~l~~N~ 200 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPA--WVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCH--HHHTTEECCSSC
T ss_pred EEECCCCCCCccCHHHhhhccH--hhcceEEecCCC
Confidence 99998877765432 111110 024678887764
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=3e-11 Score=117.48 Aligned_cols=128 Identities=25% Similarity=0.401 Sum_probs=108.5
Q ss_pred hhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEeccCC
Q 035887 512 RRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSET 590 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~ 590 (886)
.+.+++.++.+..+|. ...++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. ++.+.+|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3456667777766653 33579999999999999999888899999999999999 78887754 689999999999999
Q ss_pred Cccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcc
Q 035887 591 SIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 591 ~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++.+|....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999876 6899999999999996 678888767889999999999987653
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=4.4e-11 Score=117.88 Aligned_cols=125 Identities=20% Similarity=0.276 Sum_probs=102.2
Q ss_pred hhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCC
Q 035887 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETS 591 (886)
Q Consensus 513 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 591 (886)
+.+++.++.+..+|.. -.++|++|++++|.+..+|. .|..+++|++|+|++| .++.++ ..|..+.+|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4566777777766643 24689999999998888884 5888999999999999 777665 468899999999999999
Q ss_pred ccccch-hhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 592 IKELPH-ELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 592 i~~LP~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
|+.+|. .+..+++|++|++++|. +..+|.+.+..+++|++|++.+|+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 998876 48899999999999986 67888877888999999999887653
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=3e-11 Score=119.11 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=104.9
Q ss_pred hhhhccccceEEcCCCCCCCcceeeeecCccccccChh-hhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCC
Q 035887 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSD-FFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 513 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~-~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 590 (886)
+.+++.++.+..+|... ..+|++|++.+|.+..+++. +|..+++|++|+|++| .++.+ |..++.+.+|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 56778888877776532 34899999999999888764 5889999999999999 67665 778999999999999999
Q ss_pred Cccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcc
Q 035887 591 SIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 591 ~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
.|+.+|.. +..+++|++|++++|. +..+++..+..+++|++|++.+|....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99988765 8899999999999997 555544458899999999999887653
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=2.1e-11 Score=114.82 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=93.6
Q ss_pred CCCcceeeeecCcccc--ccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccc-cchhhhccCCCc
Q 035887 530 ACPRLLTLFLGINRLD--TISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKE-LPHELKALTKLK 606 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~--~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-LP~~i~~L~~L~ 606 (886)
..++|+.|++++|.+. .+|. .+..+++|++|++++| .++.+ ..++.+.+|++|++++|.+.. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3578999999999887 5665 4788999999999999 78877 689999999999999999998 888888899999
Q ss_pred Eeecccccccccccc-ccccCCCCCCEEEeccCCCcc
Q 035887 607 CLNLEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 607 ~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~ 642 (886)
+|++++|. +..+|. ..++.+++|++|++.+|....
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 99999997 566641 238899999999999987643
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=1.2e-11 Score=142.74 Aligned_cols=122 Identities=24% Similarity=0.339 Sum_probs=103.7
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 590 (886)
+++.+.+..|.+..++. ..|++|++++|.+..+|. +..+++|++|+|++| .++.+|..++.+.+|++|+|++|
T Consensus 424 ~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC
Confidence 45556666665554432 258999999999988875 889999999999999 88899999999999999999999
Q ss_pred CccccchhhhccCCCcEeecccccccccc--ccccccCCCCCCEEEeccCCCcc
Q 035887 591 SIKELPHELKALTKLKCLNLEYTRYLQKI--PRQLLCSFSGLEVLRMLDCGYSR 642 (886)
Q Consensus 591 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~ 642 (886)
.|+.+| .+++|++|++|++++|. +..+ |.. ++.+++|++|++++|...+
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred CCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 999999 89999999999999996 5666 665 8999999999999987654
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=4.8e-11 Score=115.88 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=111.1
Q ss_pred ccccchhhhhccccceEEcCCCCCCC-cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccc-cCccCCCE
Q 035887 507 RKWEDRRKISLMRNKIVILSKPPACP-RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGV-SKLVSLQY 584 (886)
Q Consensus 507 ~~~~~~r~l~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i-~~L~~L~~ 584 (886)
..+.+++.|++.+|.+..++....+. +|++|++++|.+..+ ..+..+++|++|++++| .++.+|+.+ +.+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 34568899999999988776665555 999999999988877 34888999999999999 888888665 89999999
Q ss_pred EeccCCCccccch--hhhccCCCcEeeccccccccccccc---cccCCCCCCEEEeccCCC
Q 035887 585 LNLSETSIKELPH--ELKALTKLKCLNLEYTRYLQKIPRQ---LLCSFSGLEVLRMLDCGY 640 (886)
Q Consensus 585 L~L~~~~i~~LP~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~ 640 (886)
|++++|.|..+|. .++.+++|++|++++|+ +..+|.. +++.+++|++|++.+|..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999999997 79999999999999997 5677764 478999999999987764
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=2.3e-10 Score=117.65 Aligned_cols=179 Identities=13% Similarity=0.175 Sum_probs=115.9
Q ss_pred CccccchhhHHHHHHHHhcCC-ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC-------------------eEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQ-VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE-------------------VVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-------------------~~~wv~ 213 (886)
..++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.. .....+. ....+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 468999999999999998754 3588999999999999999999876 2211110 111111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEE
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI-----LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIV 286 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~ii 286 (886)
.... ........+.+. ..+++.+||+||++. ...+..+...+. ....+..+|
T Consensus 102 ~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i 160 (250)
T 1njg_A 102 AASR--------------------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFL 160 (250)
T ss_dssp TTCG--------------------GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEE
T ss_pred Cccc--------------------ccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEE
Confidence 1110 011111122222 134689999999964 444555544443 334577888
Q ss_pred EEcCChhhh--hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHH
Q 035887 287 FTTRLENVC--GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRA 357 (886)
Q Consensus 287 iTtR~~~v~--~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 357 (886)
+||+..... ........+.+++++.++..+++...+...... --.+..+.|++.|+|.|..+..+...
T Consensus 161 ~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 161 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888765421 112234689999999999999999887532211 12456789999999999998776543
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=3.3e-11 Score=143.67 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=98.1
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEe
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCL 608 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L 608 (886)
..+++|++|++++|.+..+|..++ .+++|++|+|++| .++.+|..|++|.+|++|+|++|.|+.+|.++++|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 567889999999998888887755 7899999999999 78899999999999999999999999999999999999999
Q ss_pred eccccccccccccccccCCCCCCEEEeccCCCccccc
Q 035887 609 NLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIA 645 (886)
Q Consensus 609 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 645 (886)
+|++|. +..+|.+ ++.|++|++|++.+|...+.+|
T Consensus 299 ~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 299 YFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred ECCCCC-CCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence 999986 6789987 8899999999999988765433
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.14 E-value=4.2e-10 Score=113.81 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=116.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
..++|++..++++.+++.....+.+.|+|++|+|||++|+.+++.. .....-...+.+..+...+...+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH-HGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-hccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 4689999999999999987666569999999999999999999875 111111234445554444433332222111110
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCChhhh--hccCccceEEccCC
Q 035887 234 LENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRLENVC--GLMETQKKFKVECL 309 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~--~~~~~~~~~~l~~L 309 (886)
. ..-.+++.+||+||++.. ...+.+...+. ....+.++|+||+..... ........+.+.++
T Consensus 96 ~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~ 161 (226)
T 2chg_A 96 A-------------PIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (226)
T ss_dssp C-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred c-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCceeecCCC
Confidence 0 001257899999999753 33444433333 334567888888765321 11122348899999
Q ss_pred ChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 310 GDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 310 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
+.++..+++.+.+...... --.+..+.+++.++|.|..+..+
T Consensus 162 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999877432211 11456778999999999865443
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=1.3e-10 Score=134.03 Aligned_cols=121 Identities=24% Similarity=0.280 Sum_probs=106.2
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSET 590 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 590 (886)
.++.|++.+|.+..+|....+++|++|++++|.+..+|.. +..+++|++|+|++| .++.+| .++++++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 4778999999998888888899999999999999988875 889999999999999 888898 8999999999999999
Q ss_pred Ccccc--chhhhccCCCcEeeccccccccccccc---cccCCCCCCEEEe
Q 035887 591 SIKEL--PHELKALTKLKCLNLEYTRYLQKIPRQ---LLCSFSGLEVLRM 635 (886)
Q Consensus 591 ~i~~L--P~~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l 635 (886)
.|+.+ |..++.|++|++|++++|+ +..+|+. ++..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99998 8999999999999999997 5666653 1344788888853
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=1.4e-10 Score=138.27 Aligned_cols=151 Identities=25% Similarity=0.225 Sum_probs=95.9
Q ss_pred cchhhhhccccceEEcCCC-CCCCcceeee-----ecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCC
Q 035887 510 EDRRKISLMRNKIVILSKP-PACPRLLTLF-----LGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQ 583 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~~-~~~~~Lr~L~-----l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~ 583 (886)
..++++++..+.+...+.. ....+|+.+. +..|.+. +++..|..++.|++|+|++| .+..+|..+.++.+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 3578888877776554322 2222333332 2233332 45666889999999999999 7889999999999999
Q ss_pred EEeccCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcC
Q 035887 584 YLNLSETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELIT 663 (886)
Q Consensus 584 ~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (886)
+|+|++|.|+.+|..+++|++|++|+|++|. +..+|.. ++.|++|++|++.+|... .+| ..+.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-~lp-------------~~~~~ 314 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVT-TLP-------------WEFGN 314 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCC-CCC-------------SSTTS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCC-ccC-------------hhhhc
Confidence 9999999999999999999999999999997 6799987 899999999999998654 222 23778
Q ss_pred CcCCceEEEEeccch
Q 035887 664 LEHLNVLSVTLKSFG 678 (886)
Q Consensus 664 L~~L~~L~~~~~~~~ 678 (886)
|++|+.|++..+.+.
T Consensus 315 l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLE 329 (727)
T ss_dssp CTTCCCEECTTSCCC
T ss_pred CCCccEEeCCCCccC
Confidence 899999998877654
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=3.6e-10 Score=111.30 Aligned_cols=124 Identities=21% Similarity=0.310 Sum_probs=102.8
Q ss_pred eeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccch-hhhccCCCcEeecccc
Q 035887 535 LTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPH-ELKALTKLKCLNLEYT 613 (886)
Q Consensus 535 r~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~ 613 (886)
++++++++.+..+|..+ .+.|++|++++| .++.+|..+..+.+|++|+|++|.|+.+|. .+..|++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67889999999988764 368999999999 899999999999999999999999999875 4999999999999999
Q ss_pred ccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEecc
Q 035887 614 RYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKS 676 (886)
Q Consensus 614 ~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~ 676 (886)
. +..+|...++.+++|++|++.+|.... ++ ...+..+++|+.+++..+.
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~------------~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDISV-VP------------EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCCB-CC------------TTTTTTCTTCCEEECCSSC
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCCe-eC------------hhhhhcCccccEEEeCCCC
Confidence 7 688887778999999999999987653 11 1125566777777766443
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=3.2e-10 Score=111.65 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=101.9
Q ss_pred ceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc--ccCccCCCEEeccCCCcccc-chhhhccCCCcEeec
Q 035887 534 LLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG--VSKLVSLQYLNLSETSIKEL-PHELKALTKLKCLNL 610 (886)
Q Consensus 534 Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~--i~~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~l 610 (886)
-++++++++.+..+|..++ ..|++|++++| .++.+|.. ++.+.+|++|+|++|.|+.+ |..+..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3789999999999987643 38999999999 88888764 89999999999999999988 677999999999999
Q ss_pred cccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEecc
Q 035887 611 EYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKS 676 (886)
Q Consensus 611 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~ 676 (886)
++|. +..+|...++.+++|++|++.+|...... ...+..+++|+.+++..+.
T Consensus 86 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENK-IKEISNKMFLGLHQLKTLNLYDNQISCVM-------------PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCC-CCEECSSSSTTCTTCCEEECCSSCCCEEC-------------TTSSTTCTTCCEEECTTCC
T ss_pred CCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeC-------------HHHhhcCCCCCEEEeCCCC
Confidence 9997 67777766889999999999998765421 1235566777777766444
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=7.1e-10 Score=107.07 Aligned_cols=102 Identities=23% Similarity=0.357 Sum_probs=81.1
Q ss_pred eeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCccccchh-hhccCCCcEeeccc
Q 035887 535 LTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLNLEY 612 (886)
Q Consensus 535 r~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~ 612 (886)
++++++++.+..+|..+ .++|++|+|++| .++.+ |..++++.+|++|+|++|+|+.+|.. +.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 57788888887777653 277888888888 66666 56788888888888888888888876 47888888888888
Q ss_pred cccccccccccccCCCCCCEEEeccCCCc
Q 035887 613 TRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 613 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
|. +..+|.+.+..+++|++|++.+|...
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 86 67788776788888888888887654
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=7.6e-10 Score=106.50 Aligned_cols=104 Identities=24% Similarity=0.372 Sum_probs=83.5
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCccccchh-hhccCCCcEeec
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLNL 610 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l 610 (886)
..++++++++.+..+|..+ .+.|++|+|++| .++.+ |..++.+.+|++|+|++|+|+.+|.. +..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3567888888888887653 377888999988 67766 56688888999999999988888876 578889999999
Q ss_pred cccccccccccccccCCCCCCEEEeccCCCc
Q 035887 611 EYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 611 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
++|. +..+|.+.+..+++|++|++.+|+..
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8886 67788776888889999999888654
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=6.1e-09 Score=111.90 Aligned_cols=273 Identities=15% Similarity=0.041 Sum_probs=145.8
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
..++|++..++++..++.. .....+.|+|++|+||||+|+.+++.. .. ...++.++.......+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH---
Confidence 4689999999988888753 244678899999999999999999876 22 234454433322222211
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCC--------C---------CCCCcEEEEEc
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPA--------I---------SKNASKIVFTT 289 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~--------~---------~~~gs~iiiTt 289 (886)
.+... ..++.+|++||+... .....+...+.. . ...+..+|.||
T Consensus 83 ----------------~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 83 ----------------ILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp ----------------HHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred ----------------HHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 11110 135678899999642 111111100000 0 01234566666
Q ss_pred CChh-hhhc-cCc-cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHhcC------
Q 035887 290 RLEN-VCGL-MET-QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRAMSG------ 360 (886)
Q Consensus 290 R~~~-v~~~-~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~------ 360 (886)
.... +... ... ...+.+.+++.+|..+++.+.+...... --.+....+++.++|.|..+..+...+..
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTS
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhc
Confidence 5432 2111 112 2578999999999999998887543311 12466788999999999888666554321
Q ss_pred --CCCHHHHHHHHHHHhhcccCCCCChhhhhhhHHhhhcCCCcchHHHHHhhhcCCCCCcccCHHHHH----HHHHhcCC
Q 035887 361 --KKTPEEWNYAIEMLRRSASEFPGMEKEVYPLLKFSYDSLSSDVLRFCLLYCSLFPEDYHIGKIELI----ECWIGEGF 434 (886)
Q Consensus 361 --~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li----~~w~a~g~ 434 (886)
.-+.+....+...+..........+..+...+.-.|..=+. .....-..++ +++..+- ++-+..|+
T Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lg-------i~~~tl~~~l~~~~i~~~l 294 (324)
T 1hqc_A 223 EEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALS-------EDPGTLEEVHEPYLIRQGL 294 (324)
T ss_dssp CSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTT-------SCHHHHHHHTHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhC-------CCHHHHHHHHhHHHHHhcc
Confidence 12344444444433211111111111222222222222111 1222222222 3333332 23456788
Q ss_pred cCCccCcchhhhhhhHHHH-HHHHhccccc
Q 035887 435 LNGYEGINGVHNKGYYIIG-VLVQACLLEV 463 (886)
Q Consensus 435 i~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 463 (886)
+..........+.|..|++ ++.+|+|+|+
T Consensus 295 i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 295 LKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp EEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 8765445667788999997 8999999885
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=3.2e-09 Score=114.11 Aligned_cols=185 Identities=17% Similarity=0.166 Sum_probs=115.5
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... .......++++..+.......+ +++++.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 46899999999999999887666699999999999999999998751 1111112444544443332222 112111100
Q ss_pred CCCCCHHHHHHHHHHHh-ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChhh--hhccCccceEEccC
Q 035887 234 LENRSLEEKASGIFKIL-SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLENV--CGLMETQKKFKVEC 308 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v--~~~~~~~~~~~l~~ 308 (886)
. ...+ .+++.++|+||++. ...+..+...+. ....++.+|+||+...- .........+++.+
T Consensus 99 ~------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~ 165 (323)
T 1sxj_B 99 K------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165 (323)
T ss_dssp B------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred c------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhceEEeecC
Confidence 0 0011 34689999999975 334444433333 33456788888876432 11122345899999
Q ss_pred CChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH-HHHHHH
Q 035887 309 LGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA-LITTGR 356 (886)
Q Consensus 309 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla-i~~~~~ 356 (886)
++.++..+++...+...... --.+....|++.|+|.|.. +..+..
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999876432211 1145678899999999955 444433
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=4.7e-11 Score=118.43 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=66.2
Q ss_pred CCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEee
Q 035887 530 ACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLN 609 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~ 609 (886)
.+++|++|++++|.+..+| .+..+++|++|++++| .++.+|..++.+++|++|++++|.++.+| .++++++|++|+
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 4556666666666666655 3556666666666666 56666666666666666666666666665 466666666666
Q ss_pred cccccccccccc-ccccCCCCCCEEEeccCCCc
Q 035887 610 LEYTRYLQKIPR-QLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 610 l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 641 (886)
+++|. +..+|. ..+..+++|++|++.+|...
T Consensus 122 l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 122 MSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 66664 444443 22566666666666666543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=1.2e-09 Score=105.52 Aligned_cols=106 Identities=21% Similarity=0.347 Sum_probs=91.7
Q ss_pred hhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEeccCCC
Q 035887 513 RKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSETS 591 (886)
Q Consensus 513 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 591 (886)
+.+++.++.+..+|... .++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. ++++.+|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 56777788877776543 489999999999999998888999999999999999 88888876 5899999999999999
Q ss_pred ccccchh-hhccCCCcEeecccccccccccc
Q 035887 592 IKELPHE-LKALTKLKCLNLEYTRYLQKIPR 621 (886)
Q Consensus 592 i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~ 621 (886)
|+.+|.. +..+++|++|++++|+ +...|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 9999987 8999999999999997 454443
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=2.3e-09 Score=104.04 Aligned_cols=108 Identities=27% Similarity=0.398 Sum_probs=95.2
Q ss_pred ccchhhhhccccceEEcCC--CCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEE
Q 035887 509 WEDRRKISLMRNKIVILSK--PPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYL 585 (886)
Q Consensus 509 ~~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L 585 (886)
.+++++|.+.+|.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. ++.+.+|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 4689999999999887665 367899999999999999999888899999999999999 78877764 6899999999
Q ss_pred eccCCCccccchh-hhccCCCcEeecccccccc
Q 035887 586 NLSETSIKELPHE-LKALTKLKCLNLEYTRYLQ 617 (886)
Q Consensus 586 ~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~ 617 (886)
++++|.++.+|.. +..+++|++|++++|+...
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999999999987 5889999999999997433
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=1.6e-09 Score=104.13 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=90.4
Q ss_pred chhhhhccccceEEcCCCCCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCcc-ccCccCCCEEeccC
Q 035887 511 DRRKISLMRNKIVILSKPPACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSG-VSKLVSLQYLNLSE 589 (886)
Q Consensus 511 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~ 589 (886)
..+.+++.+|.+..+|... .++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. +..+.+|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 3456788888887777543 489999999999999998888999999999999999 78888765 58999999999999
Q ss_pred CCccccchh-hhccCCCcEeecccccc
Q 035887 590 TSIKELPHE-LKALTKLKCLNLEYTRY 615 (886)
Q Consensus 590 ~~i~~LP~~-i~~L~~L~~L~l~~~~~ 615 (886)
|.|+.+|.. +.++++|++|++++|+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 999999875 89999999999999963
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=7.3e-11 Score=117.02 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=101.8
Q ss_pred cceeeeecCc--cccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccccchhhhccCCCcEeec
Q 035887 533 RLLTLFLGIN--RLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNL 610 (886)
Q Consensus 533 ~Lr~L~l~~~--~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l 610 (886)
.|+.+.+.+. .++.+|. .+..+++|++|++++| .++.+| .++.+.+|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3444444443 4555555 4788999999999999 888898 899999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccc
Q 035887 611 EYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSF 677 (886)
Q Consensus 611 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~ 677 (886)
++|. +..+|. ++.+++|++|++.+|.... ...+..+..+++|+.+++..+.+
T Consensus 101 ~~N~-l~~l~~--~~~l~~L~~L~l~~N~i~~------------~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 101 SYNQ-IASLSG--IEKLVNLRVLYMSNNKITN------------WGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEE-CCCHHH--HHHHHHSSEEEESEEECCC------------HHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCc-CCcCCc--cccCCCCCEEECCCCcCCc------------hhHHHHHhcCCCCCEEEecCCcc
Confidence 9996 677884 8899999999999886532 11234678888888888876654
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=5.1e-09 Score=112.72 Aligned_cols=220 Identities=13% Similarity=0.073 Sum_probs=107.8
Q ss_pred ccCCCEEeccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccch
Q 035887 579 LVSLQYLNLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEIL 657 (886)
Q Consensus 579 L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (886)
+.+|+.|+|.+ .++.++.. +..|++|+.|++.++. +..++.+.+..+.++..+.......... .....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~---------~~~i~ 168 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRF---------KNRWE 168 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHT---------STTTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhc---------ccccc
Confidence 77777777777 67777654 6777777777777664 4566666566655555444332100000 00000
Q ss_pred HHHhcCCcCCc-eEEEEeccchhhhhhh-cccccccccceEEEeecCCCCcccccccc-ccCccceEeeccCCCcceEEe
Q 035887 658 VEELITLEHLN-VLSVTLKSFGALQRLL-SCQQLHSSTRALELRRCEDSKSWNILSIA-DLKYLNKLDFAYCTSLEVLRV 734 (886)
Q Consensus 658 ~~~l~~L~~L~-~L~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~i~~~~~l~~l~~ 734 (886)
-..+.++..|+ .+.+ .....++... .......++..+.+.+. +.......+. .+++|+.|+++++ +++.++.
T Consensus 169 ~~~f~~~~~L~~~i~~--~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~ 243 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQV--GAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTIPD 243 (329)
T ss_dssp TSCEEESCCCEEEEEE--CTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEECT
T ss_pred ccccccccccceeEEe--cCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-CcceecH
Confidence 00122223333 1211 1222222211 11111234455555443 1111111111 2567777777653 3554433
Q ss_pred ccccccCccCCCCCCCccEEEeccCCccccCc--ccccCCCCc-EEEEecCccchhhccccccCCCCCCCCCCcccEEec
Q 035887 735 NYAEVRTTREPYGFNSLQRVTIACCSRLREVT--WLVFAPNLK-IVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRL 811 (886)
Q Consensus 735 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L 811 (886)
..+ ..+++|+.|+|.++ +..++ .+..+++|+ .|.+.+ .++.+.. ..+.++++|+.|.+
T Consensus 244 ~aF--------~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-------~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 244 FTF--------AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-------GAFMGCDNLRYVLA 304 (329)
T ss_dssp TTT--------TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-------TTTTTCTTEEEEEE
T ss_pred hhh--------hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-------hhhhCCccCCEEEe
Confidence 222 25677777777765 44444 366777777 777766 4555543 35566777777777
Q ss_pred cccccccccccCc-CCCCCccEEe
Q 035887 812 QVLTKLKIIFRNA-LPFPNLLELF 834 (886)
Q Consensus 812 ~~~~~L~~i~~~~-~~~p~L~~L~ 834 (886)
.+ .+++.++... ..+++|+.|+
T Consensus 305 ~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CC-CccCccchhhhcCCcchhhhc
Confidence 55 4566665432 2244555443
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.2e-08 Score=109.75 Aligned_cols=228 Identities=11% Similarity=0.135 Sum_probs=147.3
Q ss_pred ccChhhhcC--------CCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCccccchh-hhccCCCcEeeccccc-
Q 035887 546 TISSDFFDF--------MPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLNLEYTR- 614 (886)
Q Consensus 546 ~~~~~~~~~--------l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~- 614 (886)
.+|...|.+ +++|+.|+|.++ ++.++ ..|..|.+|+.|+++++.+..++.. +..+.++..+.+....
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~~--i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSEK--IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCTT--CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCcc--ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 567777888 999999999984 66665 4688999999999999999888765 7777777777665421
Q ss_pred --cccccccccccCCCCCC-EEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccc-hhhhhhhcccccc
Q 035887 615 --YLQKIPRQLLCSFSGLE-VLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSF-GALQRLLSCQQLH 690 (886)
Q Consensus 615 --~l~~lp~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~-~~~~~l~~~~~~~ 690 (886)
....+....+..+.+|+ .+.+...... +. .....-....++..+.+...-. .....+ ...+
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l---~~---------~~~~~~~~~~~~~~l~~~~~l~~~~~~~l---~~~~ 225 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKL---ED---------EIMKAGLQPRDINFLTIEGKLDNADFKLI---RDYM 225 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCH---HH---------HHHHTTCCGGGCSEEEEEECCCHHHHHHH---HHHC
T ss_pred hhccccccccccccccccceeEEecCCCcH---HH---------HHhhcccCccccceEEEeeeecHHHHHHH---HHhc
Confidence 12223333344555666 3444322111 00 0111112345555555553211 111111 1224
Q ss_pred cccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCcc-EEEeccCCccccCc--c
Q 035887 691 SSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQ-RVTIACCSRLREVT--W 767 (886)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~-~L~L~~c~~l~~l~--~ 767 (886)
++|+.++|.++. +..++...+..+.+|+.|++.+ +++.+....+ ..+++|+ .|.|.+ .++.++ .
T Consensus 226 ~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF--------~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 226 PNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVF--------SNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp TTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTT--------TTCTTCCEEEEECT--TCCEECTTT
T ss_pred CCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--ccceehHHHh--------hCChhccEEEEEcc--cceEEchhh
Confidence 689999998764 5666666788899999999976 3765544333 3678899 999988 455554 5
Q ss_pred cccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEec
Q 035887 768 LVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRL 811 (886)
Q Consensus 768 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L 811 (886)
+..+++|+.|+++++ .++.+.. ..+.++++|+.++.
T Consensus 293 F~~c~~L~~l~l~~n-~i~~I~~-------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 FMGCDNLRYVLATGD-KITTLGD-------ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTEEEEEECSS-CCCEECT-------TTTCTTCCCCEEEC
T ss_pred hhCCccCCEEEeCCC-ccCccch-------hhhcCCcchhhhcc
Confidence 888999999999776 6777754 35667888888763
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=1.8e-08 Score=108.29 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF-EVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.. .. ..+ ...+.+..+...+...+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l-~~-~~~~~~~~~~~~~~~~~~~~~~-------- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL-FG-ENWRHNFLELNASDERGINVIR-------- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH-HG-GGHHHHEEEEETTCHHHHHTTH--------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh-cC-CcccCceEEeeccccCchHHHH--------
Confidence 4589999999999999988777679999999999999999999875 11 111 123444433221111111
Q ss_pred CCCCCCHHHHHHHHHHH--h-ccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCChhh-h-hccCccceEE
Q 035887 233 FLENRSLEEKASGIFKI--L-SKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRLENV-C-GLMETQKKFK 305 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~~v-~-~~~~~~~~~~ 305 (886)
+........ + .+++.++|+||++.. ..+..+...+. ....+.++|+||....- . ........+.
T Consensus 95 --------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 95 --------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp --------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred --------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 001111110 1 256889999999752 33444433333 33456788888876432 1 1111234789
Q ss_pred ccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHHHH
Q 035887 306 VECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTGRA 357 (886)
Q Consensus 306 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 357 (886)
+.+++.++...++...+....... -.+....|++.++|.|..+..+...
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999988775432111 1456788999999999876544443
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.3e-08 Score=103.65 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=104.7
Q ss_pred ccccchhhHHHHHHHHhc----CCceEEEEEcCCCchhHHHHHHHHHhhccCCC--CC--CeEEEEEeCCCCCHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPN--NF--EVVIWVVVSKDMQLESVQEK 226 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F--~~~~wv~~s~~~~~~~~~~~ 226 (886)
.+.|||+++++|...|.. +..+.+.|+|++|+|||++|+.|++....... .. -.++++.+....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999888764 57788999999999999999999998732111 11 14677777788888999999
Q ss_pred HHHHhCCCC---CCCHHHHHHHHHHHh---ccCcEEEEEccccchhhhhhccCCC--CCCCCCCcEEEEEcCChhh----
Q 035887 227 IGERIGFLE---NRSLEEKASGIFKIL---SKKKFLLLLDDIWERVDLAKLGVPF--PAISKNASKIVFTTRLENV---- 294 (886)
Q Consensus 227 i~~~l~~~~---~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~--~~~~~~gs~iiiTtR~~~v---- 294 (886)
|++++.... ....+.+. .+...+ .+++++++||+++...+-+-+...+ +.......-||.++...+.
T Consensus 101 I~~~L~g~~~~~~~~~~~L~-~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALN-FYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHH-HHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHHhcCCCCCchHHHHHHH-HHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 999996543 22223333 333332 4567999999997532111111111 1011111223334433221
Q ss_pred -----hhccCccceEEccCCChHHHHHHHHHHhc
Q 035887 295 -----CGLMETQKKFKVECLGDNEAWELFLQKVG 323 (886)
Q Consensus 295 -----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 323 (886)
...++ ...+.+.+++.+|-.+++.+++.
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11111 24689999999999999988863
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=7.9e-07 Score=97.79 Aligned_cols=218 Identities=16% Similarity=0.135 Sum_probs=129.7
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCccccchhhhccCCCcEeecc
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSIKELPHELKALTKLKCLNLE 611 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~L~l~ 611 (886)
+|+.+.+..+ +..++...|.++ .|+.+.+..+ ++.++ ..|.++.+|+.+++.+|+++.+|...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 6888887665 667777777774 5888888764 44444 56778888888888888888888775556888888887
Q ss_pred ccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhccccccc
Q 035887 612 YTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQLHS 691 (886)
Q Consensus 612 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~~~~ 691 (886)
.+ +..++.+.+.++++|+.+.+..+- ..++. ..+.+ .+|+
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~l--~~I~~------------~aF~~-~~L~----------------------- 251 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPENV--STIGQ------------EAFRE-SGIT----------------------- 251 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTTC--CEECT------------TTTTT-CCCS-----------------------
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCCc--cCccc------------ccccc-CCcc-----------------------
Confidence 54 677887778888888888876431 11110 00111 2333
Q ss_pred ccceEEEeecCCCCccccccccccCccceEeeccCCC----cceEEeccccccCccCCCCCCCccEEEeccCCccccCc-
Q 035887 692 STRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTS----LEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLREVT- 766 (886)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~----l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~- 766 (886)
.+.+.. .+..++...+..+++|+.+.+.+... +..+.... ...+++|+.+.|.+ .+..++
T Consensus 252 ---~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--------F~~c~~L~~l~l~~--~i~~I~~ 316 (401)
T 4fdw_A 252 ---TVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--------LEGCPKLARFEIPE--SIRILGQ 316 (401)
T ss_dssp ---EEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT--------TTTCTTCCEECCCT--TCCEECT
T ss_pred ---EEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH--------hhCCccCCeEEeCC--ceEEEhh
Confidence 333321 12333333455566666666654211 11121111 12466777777764 244443
Q ss_pred -ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEecccccccccc
Q 035887 767 -WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKII 820 (886)
Q Consensus 767 -~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i 820 (886)
.+..+++|+.|.|..+ ++.+.. ..+.++ +|+.|.+.+. .+..+
T Consensus 317 ~aF~~c~~L~~l~lp~~--l~~I~~-------~aF~~~-~L~~l~l~~n-~~~~l 360 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN--VTQINF-------SAFNNT-GIKEVKVEGT-TPPQV 360 (401)
T ss_dssp TTTTTCCSCCEEEECTT--CCEECT-------TSSSSS-CCCEEEECCS-SCCBC
T ss_pred hhhcCCCCccEEEECcc--ccEEcH-------HhCCCC-CCCEEEEcCC-CCccc
Confidence 3566777887777543 555533 245556 7888887763 34443
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5.9e-08 Score=105.30 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=76.1
Q ss_pred eeeecCc-cccccChhhhcCCCCCcEEEccC-CCcccccC-ccccCccCCCEEeccCCCccccch-hhhccCCCcEeecc
Q 035887 536 TLFLGIN-RLDTISSDFFDFMPSLKVLNLSK-NRSLSQLP-SGVSKLVSLQYLNLSETSIKELPH-ELKALTKLKCLNLE 611 (886)
Q Consensus 536 ~L~l~~~-~l~~~~~~~~~~l~~Lr~L~Ls~-~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~l~ 611 (886)
.+++.++ .+..+|. +..+.+|++|+|++ | .++.+| ..|+.|.+|++|+|++|.|+.+|. .+.+|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 7777776 77788888888886 6 777776 467888888888888888887765 46888888888888
Q ss_pred ccccccccccccccCCCCCCEEEeccCCCc
Q 035887 612 YTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 612 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
+|. +..+|.+.+..++ |++|++.+|...
T Consensus 89 ~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 885 6778776555555 888888877653
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=2.9e-07 Score=98.44 Aligned_cols=179 Identities=12% Similarity=0.153 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF-EVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
+.++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+ ...+.+..+...+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH-----------
Confidence 45899999999999998877665689999999999999999998751 1111 123344444321111
Q ss_pred CCCCCCHHHHHHHHHHH--h-ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChh-h-hhccCccceEE
Q 035887 233 FLENRSLEEKASGIFKI--L-SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLEN-V-CGLMETQKKFK 305 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~-v-~~~~~~~~~~~ 305 (886)
...+........ + .+++.++|+||++. ......+...+. ....+.++|+||.... + .........+.
T Consensus 84 -----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 84 -----VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp -----TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred -----HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 111111111111 1 25688999999974 334454544444 3345677888776543 2 11122345899
Q ss_pred ccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 306 VECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 306 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
+.+++.++...++...+...... --.+....+++.++|.+..+...
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998877543311 12456778889999998765433
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.61 E-value=4.3e-07 Score=99.49 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHHhcCC-ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC-------------------eEEEEE
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQ-VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE-------------------VVIWVV 213 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-------------------~~~wv~ 213 (886)
..++|++..++.+.+.+..++ ...+.|+|++|+||||+|+.+.+.. .....+. ..+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 358999999999999998765 3578899999999999999999876 2111110 011111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcC
Q 035887 214 VSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKI-LSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTR 290 (886)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR 290 (886)
.+.... .....++...+... ..+++.++|+||++. ......+...+. ....+..+|++|.
T Consensus 95 ~~~~~~----------------~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 95 AASRTK----------------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATT 157 (373)
T ss_dssp TTCSCC----------------SSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEES
T ss_pred ccccCC----------------HHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeC
Confidence 111000 11222222211110 135678999999964 333444433333 2334567777776
Q ss_pred Chh-h-hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 291 LEN-V-CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 291 ~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
... + .........+++.+++.++..+++.+.+...... --.+....|++.++|.|..+..+.
T Consensus 158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 443 2 1112234688999999999999998776432211 114557889999999998876544
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=1.5e-06 Score=95.58 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=156.7
Q ss_pred CCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCc-cccCccCCCEEeccCCCccccch-hhhccCCCcEe
Q 035887 531 CPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPS-GVSKLVSLQYLNLSETSIKELPH-ELKALTKLKCL 608 (886)
Q Consensus 531 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L 608 (886)
+..+..+.+..+ ++.++...|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++.++. .+.++.+|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 356666666543 667777778775 6999998876 555543 4555 3689998876 6777764 48888999999
Q ss_pred eccccccccccccccccCCCCCCEEEeccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccchhhhhhhcccc
Q 035887 609 NLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFGALQRLLSCQQ 688 (886)
Q Consensus 609 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~l~~~~~ 688 (886)
++.++. +..+|.+.+. .++|+.+.+..+ ...++ ...+.++++|+.+.
T Consensus 186 ~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~--l~~I~------------~~aF~~~~~L~~l~----------------- 232 (401)
T 4fdw_A 186 DLSKTK-ITKLPASTFV-YAGIEEVLLPVT--LKEIG------------SQAFLKTSQLKTIE----------------- 232 (401)
T ss_dssp ECTTSC-CSEECTTTTT-TCCCSEEECCTT--CCEEC------------TTTTTTCTTCCCEE-----------------
T ss_pred ecCCCc-ceEechhhEe-ecccCEEEeCCc--hheeh------------hhHhhCCCCCCEEe-----------------
Confidence 998775 7888887665 578888887633 11111 11133444444333
Q ss_pred cccccceEEEeecCCCCccccccccccCccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCcc----cc
Q 035887 689 LHSSTRALELRRCEDSKSWNILSIADLKYLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRL----RE 764 (886)
Q Consensus 689 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l----~~ 764 (886)
+.. .+..++...+.. .+|+.+.+. .+++.+....+ ..+++|+.+.+.++... ..
T Consensus 233 ---------l~~--~l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF--------~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 233 ---------IPE--NVSTIGQEAFRE-SGITTVKLP--NGVTNIASRAF--------YYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp ---------CCT--TCCEECTTTTTT-CCCSEEEEE--TTCCEECTTTT--------TTCTTCCEEEEESSCCCCCTTCE
T ss_pred ---------cCC--CccCcccccccc-CCccEEEeC--CCccEEChhHh--------hCCCCCCEEEeCCccccCCcccE
Confidence 322 122233224444 678888885 34665433332 36889999999886432 12
Q ss_pred Cc--ccccCCCCcEEEEecCccchhhccccccCCCCCCCCCCcccEEeccccccccccccCc-CCCCCccEEeeccCCCC
Q 035887 765 VT--WLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNPFAKLQYLRLQVLTKLKIIFRNA-LPFPNLLELFVSECPNL 841 (886)
Q Consensus 765 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L 841 (886)
++ .+..+++|+.+.|.+ .++.+.. ..+.++++|+.|.|.. +++.+.... ..+ +|+.|.+.+. .+
T Consensus 291 I~~~aF~~c~~L~~l~l~~--~i~~I~~-------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~ 357 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE--SIRILGQ-------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TP 357 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT--TCCEECT-------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SC
T ss_pred ECHHHhhCCccCCeEEeCC--ceEEEhh-------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CC
Confidence 32 477899999999984 4777654 4667789999999954 577776543 335 8999999875 44
Q ss_pred CCCCC
Q 035887 842 KKLPL 846 (886)
Q Consensus 842 ~~lp~ 846 (886)
..++.
T Consensus 358 ~~l~~ 362 (401)
T 4fdw_A 358 PQVFE 362 (401)
T ss_dssp CBCCC
T ss_pred ccccc
Confidence 44443
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.1e-07 Score=103.15 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=84.0
Q ss_pred hhcccc-ceEEcCCCCCCCcceeeeecC-ccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCC
Q 035887 515 ISLMRN-KIVILSKPPACPRLLTLFLGI-NRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETS 591 (886)
Q Consensus 515 l~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 591 (886)
++..++ .+..+|....+++|++|+|++ |.+..+++..|.++++|++|+|++| .++.+| ..|++|.+|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 566677777788999999996 9999999888999999999999999 777665 468999999999999999
Q ss_pred ccccchhhhccCCCcEeeccccc
Q 035887 592 IKELPHELKALTKLKCLNLEYTR 614 (886)
Q Consensus 592 i~~LP~~i~~L~~L~~L~l~~~~ 614 (886)
|..+|..+....+|++|+|.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 99999876555559999999986
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.47 E-value=1.8e-07 Score=95.44 Aligned_cols=171 Identities=10% Similarity=0.090 Sum_probs=100.9
Q ss_pred ccccc---hhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 155 TIVGL---DSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 155 ~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.++|+ +..++.+..++.....+.+.|+|++|+||||+|+.+++.. . .....+.|+.++...+. +.+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~-~--~~~~~~~~~~~~~~~~~------~~~~- 98 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA-N--ELERRSFYIPLGIHASI------STAL- 98 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEGGGGGGS------CGGG-
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHHHHHHH------HHHH-
Confidence 45663 3455666666655567889999999999999999999887 2 22345677776442110 0000
Q ss_pred CCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh--h--hhhccCCCCCCCCCC-cEEEEEcCChh---------hhhc
Q 035887 232 GFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV--D--LAKLGVPFPAISKNA-SKIVFTTRLEN---------VCGL 297 (886)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~--~~~l~~~~~~~~~~g-s~iiiTtR~~~---------v~~~ 297 (886)
+ +.+ .++.+||+||++... . .+.+...+......+ .++|+||+... +...
T Consensus 99 --------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r 162 (242)
T 3bos_A 99 --------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSR 162 (242)
T ss_dssp --------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHH
T ss_pred --------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhH
Confidence 0 011 356789999997431 1 222221111001112 24777776422 1111
Q ss_pred cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 298 METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 298 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
+.....+.+.+++.++..+++...+..... .--.+....+++.++|.+-.+..+
T Consensus 163 ~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 163 MHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 122268999999999999999987743221 122456788999999988766543
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.46 E-value=1e-07 Score=93.48 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPN----NFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
..++||+++++++.+.+.....+.+.|+|++|+||||+|+.+++....... .....+++.++. +.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV----- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH-----
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh-----
Confidence 458999999999999998776778899999999999999999987621100 122344554321 10
Q ss_pred HhCCCCCCCHHHHHHHHHHH---h--ccCcEEEEEccccchh---------h-hhhccCCCCCCCCCCcEEEEEcCChhh
Q 035887 230 RIGFLENRSLEEKASGIFKI---L--SKKKFLLLLDDIWERV---------D-LAKLGVPFPAISKNASKIVFTTRLENV 294 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~~gs~iiiTtR~~~v 294 (886)
.. ..........+.+. + .+++.+||+||++... . ...+...+ ...+..+|.||.....
T Consensus 91 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~---~~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 91 --AG--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHCVGATTLDEY 163 (195)
T ss_dssp --TT--TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH---HTTSCCEEEEECHHHH
T ss_pred --cc--CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh---ccCCeEEEEeCCHHHH
Confidence 00 00111111222222 2 3568899999997531 1 11111111 1223456666665442
Q ss_pred h-------hccCccceEEccCCChHHHHHHH
Q 035887 295 C-------GLMETQKKFKVECLGDNEAWELF 318 (886)
Q Consensus 295 ~-------~~~~~~~~~~l~~L~~~e~~~lf 318 (886)
. ........+.+.+++.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1 11122336889999988876653
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1.6e-06 Score=94.18 Aligned_cols=192 Identities=11% Similarity=0.104 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccC-CCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDA-PNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+.+..... ...+ .+..+..+.......+... +..+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREK-VKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTH-HHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHH-HHHHh
Confidence 4689999999999999987755558999999999999999998875100 0111 2334444443333322211 11110
Q ss_pred -CCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEEEEcCChh-hhhc-cCccceEEcc
Q 035887 233 -FLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIVFTTRLEN-VCGL-METQKKFKVE 307 (886)
Q Consensus 233 -~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~iiiTtR~~~-v~~~-~~~~~~~~l~ 307 (886)
......... .....-.+++-+|++|++... .....+...+. ......++|++|.... +... ......+.+.
T Consensus 115 ~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 115 RLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred hhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 000000000 000111235569999998642 22333322222 2234567777765432 2111 1223478999
Q ss_pred CCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 308 CLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 308 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
+++.++....+.+.+...... --.+..+.|++.++|.|..+..+
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999998877543211 12466889999999999875443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=1.9e-06 Score=95.80 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=104.0
Q ss_pred ccchhh--HHHHHHHHhcCC-ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 157 VGLDST--FDKVWRCLIQEQ-VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 157 vGr~~~--~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
+|.... ...+........ ...+.|+|++|+||||||+.+++... ....-..+++++++ .+..++...+..
T Consensus 109 ~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~-~~~~~~~v~~v~~~------~~~~~~~~~~~~ 181 (440)
T 2z4s_A 109 VGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITSE------KFLNDLVDSMKE 181 (440)
T ss_dssp CCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH-HHCCSSCEEEEEHH------HHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeHH------HHHHHHHHHHHc
Confidence 364432 333444444333 67889999999999999999998762 11111235566543 334444444422
Q ss_pred CCCCCHHHHHHHHHHHhccCcEEEEEccccchh----hhhhccCCCCCCCCCCcEEEEEcCCh---------hhhhccCc
Q 035887 234 LENRSLEEKASGIFKILSKKKFLLLLDDIWERV----DLAKLGVPFPAISKNASKIVFTTRLE---------NVCGLMET 300 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~~~~~~~~gs~iiiTtR~~---------~v~~~~~~ 300 (886)
. .. ..+.+.+..+.-+|++||++... ..+.+...+......|..||+||... .+...+..
T Consensus 182 ~---~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~ 254 (440)
T 2z4s_A 182 G---KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM 254 (440)
T ss_dssp T---CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS
T ss_pred c---cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC
Confidence 1 11 12333344367799999996422 22223222211123467888888762 12222333
Q ss_pred cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 301 QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 301 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
...+.+++++.++..+++.+.+.......++ +....|++.++|.+-.+.
T Consensus 255 g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 255 GLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp SBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 4678999999999999999887432212222 346778899999886553
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=7.2e-06 Score=90.35 Aligned_cols=103 Identities=12% Similarity=0.254 Sum_probs=56.3
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCC-----------------
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSET----------------- 590 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~----------------- 590 (886)
.+|.+|+.+.+..+ ++.++...|.++.+|+.+++.++ ++.++ ..+.++.+|+.+.+..+
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 45677777777543 66666666777777777777654 33332 23445555555444322
Q ss_pred ----Cccccc-hhhhccCCCcEeeccccccccccccccccCCCCCCEEEec
Q 035887 591 ----SIKELP-HELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRML 636 (886)
Q Consensus 591 ----~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 636 (886)
.+..+. ..+.++.+|+.+.+..+ +..++.+.+.++.+|+.+.+.
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred ccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 011111 12455566666666543 345555555666666666554
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2.6e-06 Score=97.09 Aligned_cols=187 Identities=12% Similarity=0.051 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhc-----------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.+.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 4689999999999999875 134789999999999999999999876 1 2 345555555
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HhccCcEEEEEccccchh-----hhhhccCCCCCCCCCCcEEEEEc
Q 035887 217 DMQLESVQEKIGERIGFLENRSLEEKASGIFK--ILSKKKFLLLLDDIWERV-----DLAKLGVPFPAISKNASKIVFTT 289 (886)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~gs~iiiTt 289 (886)
...... ....+....... +.........+ ...+++.+|++|+++... .+..+...+. . .+..||+++
T Consensus 113 ~~~~~~-~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~-~~~~iIli~ 186 (516)
T 1sxj_A 113 VRSKTL-LNAGVKNALDNM--SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--K-TSTPLILIC 186 (516)
T ss_dssp CCCHHH-HHHTGGGGTTBC--CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--H-CSSCEEEEE
T ss_pred cchHHH-HHHHHHHHhccc--cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--h-cCCCEEEEE
Confidence 444332 222222221110 00000000000 123578899999997421 1122222221 1 223355554
Q ss_pred CChh---hhhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch-hHHHHHH
Q 035887 290 RLEN---VCGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP-LALITTG 355 (886)
Q Consensus 290 R~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 355 (886)
.... +.........+.+.+++.++..+.+...+.......++ +....|++.++|.+ -++..+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 4322 22222334578999999999999998876533222222 34678899999954 4455443
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.30 E-value=1e-05 Score=89.70 Aligned_cols=173 Identities=13% Similarity=0.131 Sum_probs=103.4
Q ss_pred CccccchhhH---HHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035887 154 PTIVGLDSTF---DKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 154 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
..++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+.+.. ...| ..+... ......+ +.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~-~~~~~~i-r~~~-- 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAV-TSGVKEI-REAI-- 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETT-TCCHHHH-HHHH--
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEec-cCCHHHH-HHHH--
Confidence 4579998888 778888888888889999999999999999999886 2222 122221 1122222 1111
Q ss_pred hCCCCCCCHHHHHHHHH-HHhccCcEEEEEccccch--hhhhhccCCCCCCCCCCcEEE-EEcCChhh---hhccCccce
Q 035887 231 IGFLENRSLEEKASGIF-KILSKKKFLLLLDDIWER--VDLAKLGVPFPAISKNASKIV-FTTRLENV---CGLMETQKK 303 (886)
Q Consensus 231 l~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~gs~ii-iTtR~~~v---~~~~~~~~~ 303 (886)
.... ....+++.+|++|+++.. ...+.+...+. .+ ...+| .||.+... .........
T Consensus 96 -------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le--~~-~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 96 -------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE--DG-TITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp -------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHH--TT-SCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred -------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh--cC-ceEEEecCCCCcccccCHHHhCceeE
Confidence 1111 112467899999999743 23333322222 12 22333 35555431 222234458
Q ss_pred EEccCCChHHHHHHHHHHhcCCcC----CCCCChHHHHHHHHHHcCCchhHHH
Q 035887 304 FKVECLGDNEAWELFLQKVGEETL----GSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
+.+.+++.++...++.+.+..... ....--.+..+.+++.++|.+-.+.
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 899999999999999888753110 0111224567788888998876654
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.29 E-value=3.8e-06 Score=88.04 Aligned_cols=175 Identities=18% Similarity=0.118 Sum_probs=101.8
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
+.++|.+..++++.+.+.. .....+.|+|++|+|||++|+.+++.. .. ..+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHHH-
Confidence 4689999999999887743 245678999999999999999999886 22 223333322111
Q ss_pred HHHHHHHHHHhCCCCCCCHHH-HHHHHHHHhccCcEEEEEccccch----------------hhhhhccCCCCC-CCCCC
Q 035887 221 ESVQEKIGERIGFLENRSLEE-KASGIFKILSKKKFLLLLDDIWER----------------VDLAKLGVPFPA-ISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~-~~~~g 282 (886)
........ ....+......++.+|++||++.. ..+..+...+.. ....+
T Consensus 90 -------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 -------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp -------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred -------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 00011111 122222333456789999999642 111111111110 12335
Q ss_pred cEEEEEcCChhhhh-----ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc-hhHHH
Q 035887 283 SKIVFTTRLENVCG-----LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL-PLALI 352 (886)
Q Consensus 283 s~iiiTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~ 352 (886)
..||.||....... ...-...+.+...+.++..+++...+.........+ ...+++.+.|. |-.+.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 67777887543311 111234789999999999999998876443222222 45677777774 43443
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.28 E-value=2.4e-05 Score=81.21 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHH-------HHh---cCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHH
Q 035887 154 PTIVGLDSTFDKVWR-------CLI---QEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESV 223 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (886)
+.++|.+..+++++. .+. ......+.|+|++|+|||++|+.+++.. ...| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 356888777766665 232 2356788999999999999999999876 2222 223322210
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch------------hhhhhccCCCCC--CCCCCcEEEEEc
Q 035887 224 QEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER------------VDLAKLGVPFPA--ISKNASKIVFTT 289 (886)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~l~~~~~~--~~~~gs~iiiTt 289 (886)
.+.............+......+..+|++||++.. ..+..+...+.. .......||.||
T Consensus 102 -------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 00000000011122222333456889999998642 111222111110 122334466677
Q ss_pred CChhhhhc---cCc-cceEEccCCCh-HHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCC------chhHHHHHHHHh
Q 035887 290 RLENVCGL---MET-QKKFKVECLGD-NEAWELFLQKVGEETLGSHPDIPELAKTVAKECCG------LPLALITTGRAM 358 (886)
Q Consensus 290 R~~~v~~~---~~~-~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlai~~~~~~l 358 (886)
........ .+. ...+.+++++. ++...++.+... . -.+....|++.+.| ..-++..+-.+.
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 76644322 122 35688999998 666666655321 1 14457788888887 334444433332
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 035887 359 SGKKTPEEWNYAIEMLRRS 377 (886)
Q Consensus 359 ~~~~~~~~w~~~~~~l~~~ 377 (886)
. ......++.+++.+...
T Consensus 247 ~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 247 Q-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp T-SCGGGHHHHHHHHHHHT
T ss_pred h-hchHHHHHHHHHHHHHc
Confidence 2 23445666666665543
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=2.7e-07 Score=100.45 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=6.6
Q ss_pred cCCCEEeccCCCcc
Q 035887 580 VSLQYLNLSETSIK 593 (886)
Q Consensus 580 ~~L~~L~L~~~~i~ 593 (886)
.+|++|+|++|.+.
T Consensus 126 ~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 126 LRARKLGLQLNSLG 139 (372)
T ss_dssp HTEEEEECCSSCCC
T ss_pred HhccHhhcCCCCCC
Confidence 34445555554443
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.19 E-value=6.3e-06 Score=87.48 Aligned_cols=152 Identities=12% Similarity=0.152 Sum_probs=86.5
Q ss_pred ccccchhhHHHHHHHHh---------------cCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 155 TIVGLDSTFDKVWRCLI---------------QEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.. .........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHH--
Confidence 47899988888877654 2234578999999999999999888876 22222211123333211
Q ss_pred HHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhccCcEEEEEccccc-----------hhhhhhccCCCCCCCCCCcEEEE
Q 035887 220 LESVQEKIGERIGFLE-NRSLEEKASGIFKILSKKKFLLLLDDIWE-----------RVDLAKLGVPFPAISKNASKIVF 287 (886)
Q Consensus 220 ~~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~~gs~iii 287 (886)
.+.... ..........+.. .+.-+|++|+++. ......+...+. ....+..||.
T Consensus 109 ----------~l~~~~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~~i~ 174 (309)
T 3syl_A 109 ----------DLVGQYIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDDLVVIL 174 (309)
T ss_dssp ----------GTCCSSTTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTTCEEEE
T ss_pred ----------HhhhhcccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCCEEEEE
Confidence 011110 1111111111211 1456999999972 223333333333 3344567778
Q ss_pred EcCChhhhh-------ccC-ccceEEccCCChHHHHHHHHHHhc
Q 035887 288 TTRLENVCG-------LME-TQKKFKVECLGDNEAWELFLQKVG 323 (886)
Q Consensus 288 TtR~~~v~~-------~~~-~~~~~~l~~L~~~e~~~lf~~~~~ 323 (886)
||....... ... ....+.+++++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 876533211 011 126789999999999999988774
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=2.7e-06 Score=92.35 Aligned_cols=195 Identities=10% Similarity=0.067 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHHHH-hcCCceEEEEEcCCCchhHHHHHHHHHhhccCC-C--CCCe--------------------E
Q 035887 154 PTIVGLDSTFDKVWRCL-IQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAP-N--NFEV--------------------V 209 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~F~~--------------------~ 209 (886)
..++|.+..++.+.+++ ..++.+.+.|+|+.|+||||+|+.+........ + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45799999999999988 665555599999999999999999988531111 0 0110 1
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEE
Q 035887 210 IWVVVSKDM-QLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIV 286 (886)
Q Consensus 210 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~ii 286 (886)
+.+..+... ......+++++.+..... ..... .+. .+.+++-++++|++.. ......+...+. ....+..+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le-~~~~~~~~I 168 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ--VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTME-KYSKNIRLI 168 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC----------------CCEEEEEECTTSSCHHHHHHHHHHHH-HSTTTEEEE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc--ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHH-hhcCCCEEE
Confidence 111111100 000012222222211100 00000 000 0234677999999974 222233322222 223356777
Q ss_pred EEcCChh-hh-hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 035887 287 FTTRLEN-VC-GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITTG 355 (886)
Q Consensus 287 iTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 355 (886)
++|.+.. +. ........+++.+++.++..+.+.+.+.......+. .+....|++.++|.+..+..+.
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 7776532 21 112234679999999999999998877432211110 2457889999999987664433
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.18 E-value=0.0001 Score=79.13 Aligned_cols=171 Identities=17% Similarity=0.115 Sum_probs=101.0
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
+.++|++..++++..++.. .....|.|+|++|+|||++|+.+.+.. ...| +.+.++......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~------- 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSG------- 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchh-------
Confidence 4689999999999888864 344678899999999999999998876 2222 333332221111
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCC-----------------CCCCCcEEEEEc
Q 035887 229 ERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPA-----------------ISKNASKIVFTT 289 (886)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~-----------------~~~~gs~iiiTt 289 (886)
.....+.. ..+..+|++|++... .....+...+.. ...++..+|.||
T Consensus 96 ------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 96 ------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp ------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred ------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 11111111 245678899999742 111111111100 011124566666
Q ss_pred CChhh-h-hccC-ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 290 RLENV-C-GLME-TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 290 R~~~v-~-~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
..... . .... ....+.+.+++.++...++.+.+...... --.+....+++.+.|.|-.+..+
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHH
Confidence 55332 1 1111 23679999999999999998877432211 12456778888999998655433
No 178
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.17 E-value=1.5e-05 Score=85.23 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=101.5
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
+.++|.+..++.+.+++..+.. .++.+.|++|+||||+|+.+.+.. . ..++.++.+.. ....+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i--------- 89 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV--------- 89 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH---------
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH---------
Confidence 4689999999999999987654 577778889999999999999876 1 23455554432 22221
Q ss_pred CCCCCCHHHHHHHHHHHh-----ccCcEEEEEccccchh---hhhhccCCCCCCCCCCcEEEEEcCChhh-h-hccCccc
Q 035887 233 FLENRSLEEKASGIFKIL-----SKKKFLLLLDDIWERV---DLAKLGVPFPAISKNASKIVFTTRLENV-C-GLMETQK 302 (886)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~~gs~iiiTtR~~~v-~-~~~~~~~ 302 (886)
...+.+.. .+++-++++||++... ....+...+. ....+.++|+||....- . .......
T Consensus 90 ----------~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 90 ----------RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp ----------HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred ----------HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 11222222 2367899999997532 3333322222 22235677777776431 1 1111235
Q ss_pred eEEccCCChHHHHHHH-------HHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHH
Q 035887 303 KFKVECLGDNEAWELF-------LQKVGEETLGSHPDIPELAKTVAKECCGLPLALI 352 (886)
Q Consensus 303 ~~~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 352 (886)
.+.+++++.++-.+++ ...+.......++ .+....|++.++|.+..+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 7899999988844332 2222222211111 2667788899988876543
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.16 E-value=1.4e-05 Score=87.19 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=102.1
Q ss_pred CccccchhhHHH---HHHHHhcCCc--eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe----CCCCCHHHHH
Q 035887 154 PTIVGLDSTFDK---VWRCLIQEQV--GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV----SKDMQLESVQ 224 (886)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~----s~~~~~~~~~ 224 (886)
+.++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+.+.. .....| +.+.. +........+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHHH
Confidence 468999988766 4555555443 589999999999999999999987 211122 22222 2223344444
Q ss_pred HHHHHHhCC-------------------------------C-CCCCHHHHHHHHHHHh-----ccC----cEEEEEcccc
Q 035887 225 EKIGERIGF-------------------------------L-ENRSLEEKASGIFKIL-----SKK----KFLLLLDDIW 263 (886)
Q Consensus 225 ~~i~~~l~~-------------------------------~-~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~ 263 (886)
.+....... . .......+...+.+.. .++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 433332110 0 0000122222222211 123 3599999997
Q ss_pred ch--hhhhhccCCCCCCCCCCcEEEEEcCC-h------------hh-hhccCccceEEccCCChHHHHHHHHHHhcCCcC
Q 035887 264 ER--VDLAKLGVPFPAISKNASKIVFTTRL-E------------NV-CGLMETQKKFKVECLGDNEAWELFLQKVGEETL 327 (886)
Q Consensus 264 ~~--~~~~~l~~~~~~~~~~gs~iiiTtR~-~------------~v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 327 (886)
.. .....+...+. .... ..++++|.. . .+ .........+.+.+++.++..+++...+.....
T Consensus 200 ~l~~~~~~~L~~~le-~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALE-SDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GSBHHHHHHHHHHTT-CTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ccChHHHHHHHHHhh-CcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 42 33333322222 1122 234444431 0 11 111122345899999999999999987753221
Q ss_pred CCCCChHHHHHHHHHHcC-CchhHHHH
Q 035887 328 GSHPDIPELAKTVAKECC-GLPLALIT 353 (886)
Q Consensus 328 ~~~~~~~~~~~~i~~~c~-glPlai~~ 353 (886)
. --.+....|++.+. |.|..+..
T Consensus 278 ~---~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 E---MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp C---BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred C---CCHHHHHHHHHHhcCCCHHHHHH
Confidence 1 12456788888887 77765543
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.15 E-value=1.9e-05 Score=81.45 Aligned_cols=180 Identities=15% Similarity=0.125 Sum_probs=99.1
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..++++.+++.. ...+.|.|+|++|+|||++|+.+++.. ... .+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 4689999888777665431 233568899999999999999999876 222 344444432110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-----------------hhhhccCCCCC-CCCCCc
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-----------------DLAKLGVPFPA-ISKNAS 283 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~-~~~~gs 283 (886)
.. ..........+.......+.+|++||++... .+..+...+.. ....+.
T Consensus 79 ---------~~---~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 79 ---------IG---GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp ---------ST---THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred ---------cc---ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 00 0011112222233334567999999997430 11112111110 112345
Q ss_pred EEEEEcCChhhh-hc-c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHH
Q 035887 284 KIVFTTRLENVC-GL-M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITT 354 (886)
Q Consensus 284 ~iiiTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 354 (886)
.||.||...... .. . .-...+.+...+.++-.+++...+..... ..........+++.+.|.+- .+..+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 666677654321 11 1 12357789999999999999887743221 11222234778888888754 44333
No 181
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=8.8e-07 Score=83.77 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=45.5
Q ss_pred CccEEEeccCCcccc--CcccccCCCCcEEEEecCccchhhccccccCCCCCCCC----CCcccEEeccccccccccccC
Q 035887 750 SLQRVTIACCSRLRE--VTWLVFAPNLKIVHIESCYDMDEIISAWKLGEVPGLNP----FAKLQYLRLQVLTKLKIIFRN 823 (886)
Q Consensus 750 ~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~----fp~L~~L~L~~~~~L~~i~~~ 823 (886)
+|+.|++++|. +++ +..+..+++|+.|+|++|..+++-.. ..+.. .++|++|+|++|++++.-...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 46666666654 332 33345566666666666665554321 01111 245666666666666543221
Q ss_pred -cCCCCCccEEeeccCCCCCC
Q 035887 824 -ALPFPNLLELFVSECPNLKK 843 (886)
Q Consensus 824 -~~~~p~L~~L~i~~C~~L~~ 843 (886)
...+|+|++|++++||+++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 12356666666766666664
No 182
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=2.3e-07 Score=101.07 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=17.0
Q ss_pred cCCCEEeccCCCccc-----cchhhhccCCCcEeeccccc
Q 035887 580 VSLQYLNLSETSIKE-----LPHELKALTKLKCLNLEYTR 614 (886)
Q Consensus 580 ~~L~~L~L~~~~i~~-----LP~~i~~L~~L~~L~l~~~~ 614 (886)
.+|++|+|++|.|.. ++..+..+++|++|+|++|.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 445555555555432 33334445555555555553
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=2.1e-05 Score=84.69 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=103.5
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFE-VVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.++|.+..++.+...+..++.+.+.++|+.|+||||+|+.+.+.. .. ..+. .+.-+..+.......+
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l-~~-~~~~~~~~~~~~~~~~~~~~i---------- 93 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI-YG-KNYSNMVLELNASDDRGIDVV---------- 93 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH-HT-TSHHHHEEEECTTSCCSHHHH----------
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH-cC-CCccceEEEEcCcccccHHHH----------
Confidence 468999889999888888766558999999999999999999876 21 1111 2233333332222221
Q ss_pred CCCCCHHHHHHHHHHHh------ccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChh-h-hhccCccce
Q 035887 234 LENRSLEEKASGIFKIL------SKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLEN-V-CGLMETQKK 303 (886)
Q Consensus 234 ~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~-v-~~~~~~~~~ 303 (886)
.+.+.... .+.+-++|+|+++. ....+.+...+. ......++|++|.... + ....+....
T Consensus 94 ---------r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 94 ---------RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp ---------HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ---------HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHHhhcee
Confidence 11122211 23467899999963 223333322222 2234566777665432 2 111122357
Q ss_pred EEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 304 FKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 304 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+.+.+++.++..+.+.+.+......- -.+..+.|++.++|.+--+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 89999999999988887763322111 1445778889999887654
No 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.10 E-value=0.00011 Score=79.52 Aligned_cols=180 Identities=13% Similarity=0.049 Sum_probs=103.1
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..++++.+.+.. ...+.|.|+|++|+|||++|+.+++.. .. ..+.+.++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 4689999999998887742 245678999999999999999998875 22 2345554432110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccch-------------hhhhhccCCCC---CCCCCCcE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWER-------------VDLAKLGVPFP---AISKNASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~---~~~~~gs~ 284 (886)
...........+.. .-..++.+|+||+++.. .....+...+. .....+..
T Consensus 157 -------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 -------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 00011111222222 22356789999999532 11112211111 01123445
Q ss_pred EEEEcCChhh-hh-cc-CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCC-chhHHHHHHH
Q 035887 285 IVFTTRLENV-CG-LM-ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCG-LPLALITTGR 356 (886)
Q Consensus 285 iiiTtR~~~v-~~-~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 356 (886)
||.||..... .. .. .-...+.+...+.++..+++...+...... -.......|++.+.| .+-.+..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5556654322 11 11 223467899999999999998877433211 114567889999988 4555555443
No 185
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.00022 Score=75.71 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
++++|.+..++.|.+.+.. ...+.|.++|++|+|||+||+.+++.. . . ...+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~---~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-N---STFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-S---CEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-C---CcEEEEEhHHHHh--
Confidence 4689999988888877631 123678999999999999999999875 1 1 1233344432211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-------------hhhhccCCCCC--CCCCCcEEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------DLAKLGVPFPA--ISKNASKIV 286 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~~gs~ii 286 (886)
.........+...+...-..++.+|++|+++... ....+...+.. ....+..||
T Consensus 85 -----------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 85 -----------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp -----------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred -----------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 0001122222222222234578899999997431 01111111110 122344555
Q ss_pred EEcCChhhhh--cc-CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch-hHHHHHHH
Q 035887 287 FTTRLENVCG--LM-ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP-LALITTGR 356 (886)
Q Consensus 287 iTtR~~~v~~--~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 356 (886)
.||....... .. .-...+.+...+.++-.+++...+...... --......|++.+.|.. -.+..+.+
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665432211 01 223578899999999999998887543211 11345678999998874 44554443
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.06 E-value=8.8e-05 Score=78.94 Aligned_cols=179 Identities=14% Similarity=0.106 Sum_probs=102.8
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..+++|.+.+.. ...+-|.++|++|+|||++|+.+++.. ... .+.+..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 4689999999999888731 124578999999999999999999886 222 2333321
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHH-hccCcEEEEEccccchh-------------hhhhccCCCCC--CCCCCcEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKI-LSKKKFLLLLDDIWERV-------------DLAKLGVPFPA--ISKNASKI 285 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~~gs~i 285 (886)
.+.. . ...........+.+. -..++.+|++|+++... ....+...+.. ....+..|
T Consensus 86 ~l~~----~----~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 86 DLVS----K----WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp HHHT----T----TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred HHhh----c----ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 1110 0 011112222223222 23467899999997421 01111111110 12344556
Q ss_pred EEEcCChhhhhc---cCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc-hhHHHHHH
Q 035887 286 VFTTRLENVCGL---METQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL-PLALITTG 355 (886)
Q Consensus 286 iiTtR~~~v~~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 355 (886)
|.||........ -.-...+.+...+.++-.+++...+...... --......|++.+.|. +-.|..+.
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV---LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC---CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667765432110 0223567889999999999999988643211 1134567888888874 44454444
No 187
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.05 E-value=0.00012 Score=77.13 Aligned_cols=174 Identities=15% Similarity=0.125 Sum_probs=100.0
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
..++|.+..++++.+++.. ...+.|.|+|++|+||||+|+.+++.. ... .+.+. .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~---~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN---FISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE---EEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC---EEEEE------h
Confidence 4689999988888877642 245678999999999999999999876 221 22222 2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchhh----------------hhhccCCCCC-CCCCCc
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERVD----------------LAKLGVPFPA-ISKNAS 283 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~~-~~~~gs 283 (886)
..+..... + . ........+.......+.+|++|+++.... ...+...+.. ....+.
T Consensus 83 ~~l~~~~~---g-~---~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 83 PELLTMWF---G-E---SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHHHHHH---T-T---CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred HHHHhhhc---C-c---hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 23332221 1 1 112222233333345789999999974210 1111111110 122345
Q ss_pred EEEEEcCChhhhh--ccC---ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 284 KIVFTTRLENVCG--LME---TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 284 ~iiiTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
.||.||....... ... -...+.+...+.++-.+++...+.........++ ..+++.+.|.|-+
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 6777776553211 111 2357899999999999999887754332222233 3455667777654
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.04 E-value=7.3e-05 Score=79.99 Aligned_cols=170 Identities=11% Similarity=0.090 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHhcCCc-eEEEEEcCCCchhHHHHHHHHHhhccCC-------------------CCCCeEEEEEeC---C
Q 035887 160 DSTFDKVWRCLIQEQV-GIIGLHGMGGVGKTTLLTQINNKFLDAP-------------------NNFEVVIWVVVS---K 216 (886)
Q Consensus 160 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~s---~ 216 (886)
++..+.+.+.+..++. ..+.++|+.|+||||+|+.+.+...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 4556777788877654 5789999999999999999988762111 1133 2333321 1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChh-
Q 035887 217 DMQLESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLEN- 293 (886)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~- 293 (886)
......+ +++.+.+... -..+++-++|+|+++. ......+...+. ....++.+|++|.+.+
T Consensus 87 ~~~i~~i-r~l~~~~~~~--------------~~~~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEH--------------ARLGGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFLATREPER 150 (334)
T ss_dssp SBCHHHH-HHHHHHTTSC--------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEEEESCGGG
T ss_pred CCCHHHH-HHHHHHHhhc--------------cccCCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHh
Confidence 1222211 2222222111 0135678999999974 233333333333 3344567777766543
Q ss_pred h-hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 294 V-CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 294 v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
+ ....+....+.+.+++.++..+.+.+... . -.+....+++.++|.|..+..+
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22223346899999999999999988751 1 1345678999999999876543
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.04 E-value=2.2e-05 Score=83.90 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=94.2
Q ss_pred HHHHHHHHhcC--CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHH
Q 035887 163 FDKVWRCLIQE--QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLE 240 (886)
Q Consensus 163 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (886)
...+..++... ....+.|+|++|+||||||+.+++.... . -..++++++ ..+...+...+... ...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~-~--~~~~~~i~~------~~~~~~~~~~~~~~---~~~ 90 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK-R--GYRVIYSSA------DDFAQAMVEHLKKG---TIN 90 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH-T--TCCEEEEEH------HHHHHHHHHHHHHT---CHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH-C--CCEEEEEEH------HHHHHHHHHHHHcC---cHH
Confidence 34444544443 3467889999999999999999997621 1 223455553 23333333333211 111
Q ss_pred HHHHHHHHHhccCcEEEEEccccchh----hhhhccCCCCCCCCCCcEEEEEcCChh---------hhhccCccceEEcc
Q 035887 241 EKASGIFKILSKKKFLLLLDDIWERV----DLAKLGVPFPAISKNASKIVFTTRLEN---------VCGLMETQKKFKVE 307 (886)
Q Consensus 241 ~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~~~~~~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~ 307 (886)
.+.+.+ .+.-+|++||+.... ..+.+...+......|..||+||.... +...+.....+.++
T Consensus 91 ----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~ 165 (324)
T 1l8q_A 91 ----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE 165 (324)
T ss_dssp ----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC
T ss_pred ----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeC
Confidence 122222 246799999996432 122222222101124557888776431 12222233578999
Q ss_pred CCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHH
Q 035887 308 CLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLAL 351 (886)
Q Consensus 308 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 351 (886)
+ +.++..+++...+......- -.+....|++.+ |..-.+
T Consensus 166 ~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 166 L-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp C-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHHH
T ss_pred C-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHHH
Confidence 9 99999999998874322111 145677888888 776543
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=0.00013 Score=78.67 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=100.8
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..++.|.+.+.. ...+-|.|+|++|+|||++|+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999999887631 123458899999999999999999987 222 2333322
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-------------hhhhccCCCCC--CCCCCcEEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------DLAKLGVPFPA--ISKNASKIV 286 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~~gs~ii 286 (886)
.+. .... ..........+...-..++.+|++|+++... ....+...+.. ....+..||
T Consensus 119 ~l~----~~~~---g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI 191 (355)
T 2qp9_X 119 DLV----SKWM---GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 191 (355)
T ss_dssp HHH----SCC------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred HHh----hhhc---chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 111 1100 1122222222222234578999999997421 01111111110 112345566
Q ss_pred EEcCChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc-hhHHHHHH
Q 035887 287 FTTRLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL-PLALITTG 355 (886)
Q Consensus 287 iTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 355 (886)
.||..... .+ .-...+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+.
T Consensus 192 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 192 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56665432 22 2235678999999999999998875432111 134567889999884 44454443
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=5.4e-06 Score=80.51 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=41.4
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++||+.+++++.+.+.....+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987667778999999999999999999876
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=0.00023 Score=74.82 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=101.0
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999998887732 235688999999999999999999876 22 233444433211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccchh-------------hhhhcc---CCCCC-CCCCCc
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWERV-------------DLAKLG---VPFPA-ISKNAS 283 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~l~---~~~~~-~~~~gs 283 (886)
............+.. ....++.+|++|++.... ....+. ..++. ..+.+.
T Consensus 93 ------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ------------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ------------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ------------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 001112222222222 234577899999996421 000111 01110 112345
Q ss_pred EEEEEcCChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHHH
Q 035887 284 KIVFTTRLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITTG 355 (886)
Q Consensus 284 ~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 355 (886)
.||.||..... .. .-...+.+...+.++...++...+..... +--......+++.+.|.+- ++..+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56667765432 22 12246778888888888888877643221 1113456788999999876 454443
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=1.6e-05 Score=85.79 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=54.5
Q ss_pred hhhcCCCCCcEEEccCCCcccccCccccCccCCCEEeccCCCccc-cchhhh--ccCCCcEeecccccc-------cccc
Q 035887 550 DFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNLSETSIKE-LPHELK--ALTKLKCLNLEYTRY-------LQKI 619 (886)
Q Consensus 550 ~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-LP~~i~--~L~~L~~L~l~~~~~-------l~~l 619 (886)
.++..+++|+.|+|+++..+ .+|. +. +.+|++|+|..|.+.. -...+. .+++|++|+|+.+.. +..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 45677889999999887323 4454 43 7889999998877652 112333 688888888853210 1111
Q ss_pred cccc-ccCCCCCCEEEeccCCCc
Q 035887 620 PRQL-LCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 620 p~~~-i~~l~~L~~L~l~~~~~~ 641 (886)
...+ ...+++|++|++.+|...
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCc
Confidence 1111 134678888888776653
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=5.1e-06 Score=78.56 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=54.6
Q ss_pred ccceEeeccCCCcceEEeccccccCccCCCCCCCccEEEeccCCcccc--CcccccC----CCCcEEEEecCccchhhcc
Q 035887 717 YLNKLDFAYCTSLEVLRVNYAEVRTTREPYGFNSLQRVTIACCSRLRE--VTWLVFA----PNLKIVHIESCYDMDEIIS 790 (886)
Q Consensus 717 ~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l----~~L~~L~L~~~~~l~~i~~ 790 (886)
.|+.|++++|. ++...... ...+++|++|+|++|..+++ +..++.+ ++|+.|+|++|..+++-..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~--------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH--------MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG--------GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHH--------hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 56677777664 33211111 12567777777777776664 2234443 4688888888877776532
Q ss_pred ccccCCCCCCCCCCcccEEecccccccccc
Q 035887 791 AWKLGEVPGLNPFAKLQYLRLQVLTKLKII 820 (886)
Q Consensus 791 ~~~~~~~~~~~~fp~L~~L~L~~~~~L~~i 820 (886)
..+..+|+|++|.|++|+.++..
T Consensus 133 -------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 -------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred -------HHHhcCCCCCEEECCCCCCCCch
Confidence 23456788888888888877764
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.94 E-value=0.0003 Score=77.01 Aligned_cols=180 Identities=12% Similarity=0.062 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..++.+.+++.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.+.++.-.+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhcc-
Confidence 4689999999999888732 234678999999999999999998875 21 2334443332110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch-------------hhhhhccCCC---CCCCCCCcEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER-------------VDLAKLGVPF---PAISKNASKI 285 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~---~~~~~~gs~i 285 (886)
. . ..........+...-...+.+|+||+++.. .....+...+ .........|
T Consensus 188 -~-------~----g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 188 -Y-------V----GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp ----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred -c-------c----chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 0 0 111111122222222346689999999642 0011111111 0011223445
Q ss_pred EEEcCChhhh--hccCc-cceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh-HHHHHH
Q 035887 286 VFTTRLENVC--GLMET-QKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL-ALITTG 355 (886)
Q Consensus 286 iiTtR~~~v~--~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 355 (886)
|.||...... ..... ...+.+...+.++..+++...+..... .-.......|++.+.|..- ++..+.
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566543221 11112 246889999999999999888754321 1224466789999988654 454443
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.89 E-value=0.00036 Score=77.63 Aligned_cols=181 Identities=13% Similarity=0.095 Sum_probs=101.0
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
+.++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++.. . . ...+.+..+.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~--~--~~~~~v~~~~l---- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N--N--STFFSISSSDL---- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C--S--SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C--C--CCEEEEeHHHH----
Confidence 4689999999998887631 234678999999999999999999875 1 1 11222322211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch-------------hhhhhccCCCCC--CCCCCcEEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER-------------VDLAKLGVPFPA--ISKNASKIV 286 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~~gs~ii 286 (886)
... ...........+. ...-..++.+|++|+++.. .....+...+.. ....+..||
T Consensus 205 --~~~----~~g~~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 205 --VSK----WLGESEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp -------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred --Hhh----hcchHHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 111 1011112222222 1222357889999999742 011222222210 123455666
Q ss_pred EEcCChhhhh--cc-CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc-hhHHHHHH
Q 035887 287 FTTRLENVCG--LM-ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL-PLALITTG 355 (886)
Q Consensus 287 iTtR~~~v~~--~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 355 (886)
.||....... .. .-...+.+...+.++...+|...+....... -......|++.+.|. +-.|..+.
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6776543211 11 2234678888888888899988875432111 134567889999885 44454443
No 197
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=0.00048 Score=75.59 Aligned_cols=100 Identities=13% Similarity=0.214 Sum_probs=52.4
Q ss_pred cceeeeecCccccccChhhhcCCCCCcEEEccCCC--cccccC-ccccCccCCCEEeccCCCccccchh-hhccCCCcEe
Q 035887 533 RLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNR--SLSQLP-SGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCL 608 (886)
Q Consensus 533 ~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~--~i~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L 608 (886)
.|+.+.+..+ ++.+....|.++.+|+.+.++.+. .++.++ ..|..+.+|+.+.+..+ ++.++.. +..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3666666543 555666666666666666665431 233332 23445555655555432 4444433 4555666666
Q ss_pred eccccccccccccccccCCCCCCEEEec
Q 035887 609 NLEYTRYLQKIPRQLLCSFSGLEVLRML 636 (886)
Q Consensus 609 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 636 (886)
.+..+ +..++...+..+.+|+.+.+.
T Consensus 143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 143 TIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred cccce--eeeecccceeccccccccccc
Confidence 66433 344555545555666665554
No 198
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=8.7e-06 Score=83.14 Aligned_cols=106 Identities=28% Similarity=0.297 Sum_probs=67.5
Q ss_pred CCCCccee--eeecCccccccC---hhhhcCCCCCcEEEccCCCcccc---cCccccCccCCCEEeccCCCccccchhhh
Q 035887 529 PACPRLLT--LFLGINRLDTIS---SDFFDFMPSLKVLNLSKNRSLSQ---LPSGVSKLVSLQYLNLSETSIKELPHELK 600 (886)
Q Consensus 529 ~~~~~Lr~--L~l~~~~l~~~~---~~~~~~l~~Lr~L~Ls~~~~i~~---lp~~i~~L~~L~~L~L~~~~i~~LP~~i~ 600 (886)
...+.|.. +++..|....++ ......+++|+.|+|++| .++. +|..++.+++|++|+|++|.|+.+ ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 33445555 455555322222 112356788888888888 5654 345666788888888888888876 3455
Q ss_pred ccC--CCcEeecccccccccccc------ccccCCCCCCEEEec
Q 035887 601 ALT--KLKCLNLEYTRYLQKIPR------QLLCSFSGLEVLRML 636 (886)
Q Consensus 601 ~L~--~L~~L~l~~~~~l~~lp~------~~i~~l~~L~~L~l~ 636 (886)
.+. +|++|+|++|+....+|. .++..+++|+.|+-.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 555 888888888875444542 235677778777643
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.77 E-value=0.00015 Score=81.31 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=82.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccC--CCCC--CeEEEEEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDA--PNNF--EVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F--~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
+.++||+.+++++++.+......-+.|+|++|+|||++|+.++...... -... ..++.+.++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 3589999999999999977656667899999999999999999885210 0011 112233332 0
Q ss_pred HhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhh-------hhccCccc
Q 035887 230 RIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENV-------CGLMETQK 302 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v-------~~~~~~~~ 302 (886)
...+........+. ...-..++.+|++| ........+...+. ...-++|.+|..... ........
T Consensus 247 ~~~g~~e~~~~~~~---~~~~~~~~~iLfiD--~~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 247 KYRGEFEDRLKKVM---DEIRQAGNIILFID--AAIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp ------CTTHHHHH---HHHHTCCCCEEEEC--C--------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred cccchHHHHHHHHH---HHHHhcCCeEEEEe--CchhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 00000011122222 22223567899999 22222222222222 223556666655431 11112334
Q ss_pred eEEccCCChHHHHHHHHHHhc
Q 035887 303 KFKVECLGDNEAWELFLQKVG 323 (886)
Q Consensus 303 ~~~l~~L~~~e~~~lf~~~~~ 323 (886)
.+.+.+++.++..+++...+.
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTT
T ss_pred cceeCCCCHHHHHHHHHHHHH
Confidence 799999999999999987664
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00075 Score=72.43 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=100.0
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
+++.|.++.+++|.+.+.- ...+-|.++|++|.|||.||+++++.. ...| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 4578899888888776531 234678899999999999999999987 2232 3444432211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCC
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~g 282 (886)
......+.....+.. .-+..+++|++|+++... ....+...+.. ....+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 000011112222222 224578999999987310 01111111110 12334
Q ss_pred cEEEEEcCChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 283 SKIVFTTRLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 283 s~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
-.||.||...+. .+.-.-+..+.++..+.++-.++|+.+.........-+ ...+++.+.|.--|
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SGA 356 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSGA 356 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCHH
Confidence 456667765443 22223356889999999999999988875543222233 35677788876533
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.71 E-value=8.9e-05 Score=89.87 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhcc--CCCC--CCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLD--APNN--FEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~--F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
+.++||+.++.++++.+......-+.++|++|+||||+|+.+++.... +... -..++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 357999999999999998766666789999999999999999987521 1111 12344444322110
Q ss_pred HhCCCCCCCHHHHHHHHHHHhc--cCcEEEEEccccchh---h----hhh---ccCCCCCCCCCCcEEEEEcCChhh---
Q 035887 230 RIGFLENRSLEEKASGIFKILS--KKKFLLLLDDIWERV---D----LAK---LGVPFPAISKNASKIVFTTRLENV--- 294 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~----~~~---l~~~~~~~~~~gs~iiiTtR~~~v--- 294 (886)
+.............+...+. +++.+|++|++.... . ++. +...+. ..+-.+|.+|.....
T Consensus 240 --g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~~~~~ 314 (854)
T 1qvr_A 240 --GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDEYREI 314 (854)
T ss_dssp --------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHHHHHH
T ss_pred --cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchHHhhh
Confidence 00001122222222333332 368999999997532 0 111 111111 123345555554332
Q ss_pred ---hhccCccceEEccCCChHHHHHHHHHHh
Q 035887 295 ---CGLMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 295 ---~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
.........+.+.+++.++..+++....
T Consensus 315 ~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 315 EKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred ccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1112233468999999999999987543
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.70 E-value=6e-05 Score=69.72 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|++..+.++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999888753 233456799999999999999999875
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=0.00021 Score=74.85 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=90.1
Q ss_pred cchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCC-CCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 035887 158 GLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAP-NNFEVVIWVVVSK-DMQLESVQEKIGERIGFLE 235 (886)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 235 (886)
|-++.++.+.+.+..++.+.+.++|+.|+||||+|+.+.+...... .+.+ ..++..+. ...+..+ +++++.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4456677888888877778999999999999999999987531111 2333 34555442 2333332 22333332211
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCCh-hhhhccCccceEEccCCChH
Q 035887 236 NRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLE-NVCGLMETQKKFKVECLGDN 312 (886)
Q Consensus 236 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~-~v~~~~~~~~~~~l~~L~~~ 312 (886)
..+++-++|+|+++. ....+.+...+. .....+.+|++|.+. .+....... .+++.+++++
T Consensus 79 --------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 --------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp --------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred --------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 124567899999974 334444443333 334567777766544 333322333 8999999999
Q ss_pred HHHHHHHHHh
Q 035887 313 EAWELFLQKV 322 (886)
Q Consensus 313 e~~~lf~~~~ 322 (886)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.68 E-value=0.0011 Score=68.00 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=94.3
Q ss_pred CccccchhhHHHHHHHHh---c---------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLI---Q---------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
+.++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~~- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVEM- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTTS-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHHH-
Confidence 468999988877765542 1 123458899999999999999999876 2222 33433221110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCCcE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~gs~ 284 (886)
.. ..........+.......+.++++|+++... ....+...+.. ....+..
T Consensus 85 ---------~~---~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 85 ---------FV---GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp ---------CC---CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred ---------hh---hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEE
Confidence 00 1122222333333334567899999984210 11111111110 1223456
Q ss_pred EEEEcCChhhh-hc-cC---ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCC-chhHHH
Q 035887 285 IVFTTRLENVC-GL-ME---TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCG-LPLALI 352 (886)
Q Consensus 285 iiiTtR~~~v~-~~-~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 352 (886)
||.||...+.. .. .. -...+.+...+.++-.+++...+.......... ...++..+.| .+--+.
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 66677654421 11 11 134678888888888888877764322111222 3456677777 554443
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.65 E-value=2.7e-05 Score=75.20 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 035887 159 LDSTFDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE 235 (886)
Q Consensus 159 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 235 (886)
....++.+.+++.+ .....+.|+|+.|+||||||+.+++.. .....+ .+++++ ..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGI-RGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCC-CCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCC-eEEEEE------HHHHHHHHHHHhcCch
Confidence 34445555555543 235789999999999999999999886 211111 233443 3444444443332111
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEccccc--hhhhh--hccCCCCCCCCCCcEEEEEcCCh
Q 035887 236 NRSLEEKASGIFKILSKKKFLLLLDDIWE--RVDLA--KLGVPFPAISKNASKIVFTTRLE 292 (886)
Q Consensus 236 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~~~~~~~~~gs~iiiTtR~~ 292 (886)
.. ... +.+. +.-+|||||++. ...|. .+...+......|..||+||...
T Consensus 91 ~~---~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 DT---KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CS---HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HH---HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 111 1222 566899999973 22222 22111210122467788888753
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00099 Score=72.71 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=99.2
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
+++.|.++.+++|.+.+.- ...+-|.++|++|.|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 4578899888888776542 235778899999999999999999987 222 33444433211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccchh----------------hhhhccCCCC-CCCCCC
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWERV----------------DLAKLGVPFP-AISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~-~~~~~g 282 (886)
............+.. .-...+++|++|+++... .+..+...+. .....+
T Consensus 254 -------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 001111112222222 224578999999996310 0111211111 022344
Q ss_pred cEEEEEcCChhhhhc--cC---ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchh
Q 035887 283 SKIVFTTRLENVCGL--ME---TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPL 349 (886)
Q Consensus 283 s~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 349 (886)
..||.||...+..+. .. -+..+.++..+.++-.++|+.+.........-++ ..+++.+.|.--
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~sG 388 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFNG 388 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCCH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCCH
Confidence 567777776554221 12 2457888888888888888877754332223333 566777877643
No 207
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.63 E-value=0.00055 Score=75.15 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=49.4
Q ss_pred ccChhhhcCCCCCcEEEccCCCccccc-CccccCccCCCEEeccCCCccccchh-hhccCCCcEeecccccccccccccc
Q 035887 546 TISSDFFDFMPSLKVLNLSKNRSLSQL-PSGVSKLVSLQYLNLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQL 623 (886)
Q Consensus 546 ~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~ 623 (886)
.+....|.++.+|+.+.+.++ +..+ ...+.++.+|+.+.+..+ ++.++.. +.++..|+.+.+..+. ..+...
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~- 225 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDF- 225 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTT-
T ss_pred ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehh-
Confidence 444555777777777777665 2333 334666777777777654 5555433 6667777777665542 333332
Q ss_pred ccCCCCCCEEEec
Q 035887 624 LCSFSGLEVLRML 636 (886)
Q Consensus 624 i~~l~~L~~L~l~ 636 (886)
....++|+.+.+.
T Consensus 226 ~~~~~~l~~i~ip 238 (394)
T 4fs7_A 226 ALSKTGVKNIIIP 238 (394)
T ss_dssp TTTTCCCCEEEEC
T ss_pred hcccCCCceEEEC
Confidence 2334566666654
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.62 E-value=0.00054 Score=76.70 Aligned_cols=176 Identities=14% Similarity=0.118 Sum_probs=99.5
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
..++|.+..++++.+++.. ....-|.|+|++|+|||++|+.+++.. .. ..+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch-----
Confidence 3579999999998887652 234568899999999999999998875 22 23344321
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch-------------hhhhhccCCCCC-CCCCCcEEE
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER-------------VDLAKLGVPFPA-ISKNASKIV 286 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~-~~~~gs~ii 286 (886)
. +...+. ..........+.....+++.+|+||+++.. .....+...+.. .......||
T Consensus 273 -~----l~~~~~---g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 273 -E----IMSKLA---GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp -H----HHTSCT---THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred -H----hhhhhc---chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 1 111110 111122233334444567889999999421 011112111110 122344566
Q ss_pred EEcCChhh-hhcc----CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc-hhHHH
Q 035887 287 FTTRLENV-CGLM----ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL-PLALI 352 (886)
Q Consensus 287 iTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~ 352 (886)
.||..... ...+ .-...+.+...+.++-.+++...+.........++ ..+++.+.|. +-.+.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLA 412 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHH
Confidence 66665432 1111 12346899999999999999988754332222233 4566677765 43343
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=0.00047 Score=82.64 Aligned_cols=154 Identities=15% Similarity=0.225 Sum_probs=90.3
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCC---CCCCeEEEE-EeCCCCCHHHHHHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAP---NNFEVVIWV-VVSKDMQLESVQEKIGE 229 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv-~~s~~~~~~~~~~~i~~ 229 (886)
..++||+.+++++++.|......-+.|+|++|+||||+|+.+.+...... ......+|. ..+.-.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~----------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-----------
Confidence 35799999999999999876667788999999999999999998752110 012233322 111100
Q ss_pred HhCCCCCCCHHHHHHHHHHHhc-cCcEEEEEccccch----------hh-hhhccCCCCCCCCCCcEEEEEcCChhhhh-
Q 035887 230 RIGFLENRSLEEKASGIFKILS-KKKFLLLLDDIWER----------VD-LAKLGVPFPAISKNASKIVFTTRLENVCG- 296 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~-~~~l~~~~~~~~~~gs~iiiTtR~~~v~~- 296 (886)
.+.......++....+.+.+. .++.+|++||+... .+ ...+...+. ..+..+|.+|.......
T Consensus 255 -~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 255 -AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp -CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHHHHCC
T ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchHHhhh
Confidence 000111223333333333333 45789999999743 11 122322222 23456666666543211
Q ss_pred ------ccCccceEEccCCChHHHHHHHHHHh
Q 035887 297 ------LMETQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 297 ------~~~~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
.......+.+...+.++..+++....
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11223468999999999998887654
No 210
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=2.7e-05 Score=72.30 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
+.++|.+.+. +..|..-....++|+|+.|+|||||++.+++.. ... . ..++++...+
T Consensus 18 ~f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~-g-~~~~~~~~~~ 74 (149)
T 2kjq_A 18 KFLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA-LEA-G-KNAAYIDAAS 74 (149)
T ss_dssp CCCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH-HTT-T-CCEEEEETTT
T ss_pred hcCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH-Hhc-C-CcEEEEcHHH
Confidence 3445655433 333433255789999999999999999999987 321 1 2366776544
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00074 Score=73.45 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=97.4
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
++.|.++.+++|.+.+.- ...+-|.++|++|.|||+||+++++.. ... .+.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 578899888888776431 246778899999999999999999987 222 23444332111
Q ss_pred HHHHHHHHHhCCCC-CCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCCc
Q 035887 222 SVQEKIGERIGFLE-NRSLEEKASGIFKILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNAS 283 (886)
Q Consensus 222 ~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~gs 283 (886)
.. ..+...+.......-...+++|++|+++... ....+...+.. ....+-
T Consensus 282 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 282 ------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 00 1111111222222234578999999986310 01111111110 122344
Q ss_pred EEEEEcCChhhh-----hccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 284 KIVFTTRLENVC-----GLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 284 ~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
.||.||...+.. +.-.-+..+.+...+.++-.++|+.+.........-++ ..|++.|.|.-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 556677654431 11123467889888999989999888754432222333 56778888764
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00044 Score=75.44 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
.++.|.++.+++|.+.+.. ...+-|.++|++|.|||++|+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 4578999988888776431 235678899999999999999999987 222 33444332110
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccch-------h---------hhhhccCCCCC-CCCCC
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWER-------V---------DLAKLGVPFPA-ISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~---------~~~~l~~~~~~-~~~~g 282 (886)
......+.....+.. .-...+++|++|+++.. . ....+...+.. ....+
T Consensus 254 -------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 -------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 000111122222222 22357899999998631 0 01111111110 12234
Q ss_pred cEEEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 283 SKIVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 283 s~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
-.||.||...+..+. . .-+..+.++..+.++-.++|+.+.........-+ ...|++.+.|.-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 456667776544221 1 2245788988888888888887764322122223 356777887754
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00075 Score=72.64 Aligned_cols=171 Identities=16% Similarity=0.146 Sum_probs=96.9
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
+++.|.++.+++|.+.+.- ...+-|.++|++|.|||.||+++++.. ...| +.+..+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~-- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELI-- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhh--
Confidence 3567899888888776531 235678999999999999999999987 2222 333332211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCC
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFK-ILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~g 282 (886)
.......+.....+.. .-+..+++|++|+++... .+..+...+.. ....+
T Consensus 254 ------------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 254 ------------QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp ------------CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ------------hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 1111111222222222 223578999999986310 01111111110 12334
Q ss_pred cEEEEEcCChhhhhc--cC---ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 283 SKIVFTTRLENVCGL--ME---TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 283 s~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
-.||.||...+..+. .. -+..+.+...+.++-.++|+.+........+-++ ..+++.+.|.-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 456667766554221 11 2346788888888888899888754432223333 56677787764
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=0.0021 Score=68.54 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=92.3
Q ss_pred ccccchhhHHHHHHHHhc-----CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 155 TIVGLDSTFDKVWRCLIQ-----EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
.++|.+..++.+...+.. .....+.|+|++|+||||||+.+++.. ...|. ....+-....
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~--------- 90 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQ--------- 90 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSH---------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCH---------
Confidence 568888777777666653 234679999999999999999999986 22221 1111111111
Q ss_pred HhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhccCCCCCC-------CC----------CCcEEE-EEc
Q 035887 230 RIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER--VDLAKLGVPFPAI-------SK----------NASKIV-FTT 289 (886)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~-------~~----------~gs~ii-iTt 289 (886)
.++.. +...+ .++-++++|++... ...+.+...+... .+ ..-.++ .|+
T Consensus 91 ----------~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 91 ----------GDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp ----------HHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred ----------HHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 11111 11112 23456778887532 1111111000000 00 011222 344
Q ss_pred CChhhhhcc--CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 035887 290 RLENVCGLM--ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALITT 354 (886)
Q Consensus 290 R~~~v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 354 (886)
+...+...+ .....+.+++.+.++-.+++.+.+..... .--.+.+..|++.+.|.|-.+..+
T Consensus 159 ~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 159 RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 443331111 11235789999999999999987742221 122466889999999999765433
No 215
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.51 E-value=0.0019 Score=70.71 Aligned_cols=119 Identities=11% Similarity=0.215 Sum_probs=81.0
Q ss_pred hhhhhccccceEEcCCC--CCCCcceeeeecCc---cccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEE
Q 035887 512 RRKISLMRNKIVILSKP--PACPRLLTLFLGIN---RLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYL 585 (886)
Q Consensus 512 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~---~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L 585 (886)
++.+.+..+ +..+... .+|.+|+.+.+..+ .++.+....|.++..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccc
Confidence 555555543 3444332 67899999998765 367777888888989988887765 44444 356778889999
Q ss_pred eccCCCccccchh-hhccCCCcEeeccccccccccccccccCCCCCCEEEecc
Q 035887 586 NLSETSIKELPHE-LKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLD 637 (886)
Q Consensus 586 ~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 637 (886)
.+..+ +..++.. +..+.+|+.+.+..+ +..+....+.+ .+|+.+.+..
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECT
T ss_pred cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECC
Confidence 88654 4555443 677888888888764 56666664543 5677777653
No 216
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.49 E-value=8.3e-05 Score=71.98 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=62.4
Q ss_pred CCCCcceeeeecCc-cccccC----hhhhcCCCCCcEEEccCCCcccc-----cCccccCccCCCEEeccCCCccc----
Q 035887 529 PACPRLLTLFLGIN-RLDTIS----SDFFDFMPSLKVLNLSKNRSLSQ-----LPSGVSKLVSLQYLNLSETSIKE---- 594 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~-~l~~~~----~~~~~~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~~i~~---- 594 (886)
..++.|++|++++| .+.... ...+...+.|++|+|++| .++. +...+....+|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 34567777777776 554211 122455667777777777 4432 33344445667777777776663
Q ss_pred -cchhhhccCCCcEeec--cccccccc----cccccccCCCCCCEEEeccCC
Q 035887 595 -LPHELKALTKLKCLNL--EYTRYLQK----IPRQLLCSFSGLEVLRMLDCG 639 (886)
Q Consensus 595 -LP~~i~~L~~L~~L~l--~~~~~l~~----lp~~~i~~l~~L~~L~l~~~~ 639 (886)
+...+...++|++|++ ++|..-.. +.. .+...++|++|++.+|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence 4555666667777777 55542111 222 13445667777766654
No 217
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.48 E-value=6.6e-05 Score=80.89 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=17.7
Q ss_pred ccCCCcEeecccccccccccccc--ccCCCCCCEEEeccCC
Q 035887 601 ALTKLKCLNLEYTRYLQKIPRQL--LCSFSGLEVLRMLDCG 639 (886)
Q Consensus 601 ~L~~L~~L~l~~~~~l~~lp~~~--i~~l~~L~~L~l~~~~ 639 (886)
.+++|++|++++|......+..+ ...+++|++|+++.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 35566666665554322111111 1234556666665543
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0023 Score=69.77 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=92.5
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
.++.|.++.+++|.+.+.- ...+-|.++|++|.|||++|+++++.. ... .+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 4578999988888776542 235668899999999999999999987 222 33444433211
Q ss_pred HHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhccCCCCC-CCCCC
Q 035887 221 ESVQEKIGERIGFLE-NRSLEEKASGIFKILSKKKFLLLLDDIWERV----------------DLAKLGVPFPA-ISKNA 282 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-~~~~g 282 (886)
.. ..+...+...+...-...++++++|+++... ....+...+.. ....+
T Consensus 245 -------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 -------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp -------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred -------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 00 1111112222222234578999999986310 01111111110 12334
Q ss_pred cEEEEEcCChhh-----hhccCccceEEccCCChH-HHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 283 SKIVFTTRLENV-----CGLMETQKKFKVECLGDN-EAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 283 s~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
-.||.||...+. .+...-+..+.+..+++. +-..+|+.+.........-++ ..+++.+.|.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 456667765443 221122346778666544 445566666543322222333 56677787764
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.46 E-value=0.00016 Score=73.81 Aligned_cols=79 Identities=32% Similarity=0.372 Sum_probs=62.1
Q ss_pred CCCcceeeeecCccccccCh--hhhcCCCCCcEEEccCCCcccccCccccCcc--CCCEEeccCCCccc-cc-------h
Q 035887 530 ACPRLLTLFLGINRLDTISS--DFFDFMPSLKVLNLSKNRSLSQLPSGVSKLV--SLQYLNLSETSIKE-LP-------H 597 (886)
Q Consensus 530 ~~~~Lr~L~l~~~~l~~~~~--~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~--~L~~L~L~~~~i~~-LP-------~ 597 (886)
++++|++|+|++|.+..++. ..+..+++|++|+|++| .++.+. .+..+. +|++|+|++|.+.. +| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 36789999999998877653 45678999999999999 777663 455555 99999999998873 44 2
Q ss_pred hhhccCCCcEeec
Q 035887 598 ELKALTKLKCLNL 610 (886)
Q Consensus 598 ~i~~L~~L~~L~l 610 (886)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678999999973
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.45 E-value=0.00085 Score=80.30 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCC--CeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNF--EVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
+.++||+.+++++...|......-+.++|++|+|||++|+.+.+........+ ...-++.++- ....
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------g~~~ 248 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------GTKY 248 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------cccc
Confidence 35899999999999999876666678999999999999999998752111011 1111121111 0000
Q ss_pred CCCCCCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhh-------hhccCccceE
Q 035887 232 GFLENRSLEEKASGIFKILSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENV-------CGLMETQKKF 304 (886)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v-------~~~~~~~~~~ 304 (886)
.+........ .+...-..++.+|++| ........+...+ ....-++|.||..... .........+
T Consensus 249 ~G~~e~~l~~---~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l---~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i 320 (758)
T 3pxi_A 249 RGEFEDRLKK---VMDEIRQAGNIILFID--AAIDASNILKPSL---ARGELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (758)
T ss_dssp ----CTTHHH---HHHHHHTCCCCEEEEC--C--------CCCT---TSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred cchHHHHHHH---HHHHHHhcCCEEEEEc--CchhHHHHHHHHH---hcCCEEEEeCCChHHHHHHhhccHHHHhhCcEE
Confidence 0000112222 2223333678899999 2222122222222 2334566666665441 0111123579
Q ss_pred EccCCChHHHHHHHHHHhc
Q 035887 305 KVECLGDNEAWELFLQKVG 323 (886)
Q Consensus 305 ~l~~L~~~e~~~lf~~~~~ 323 (886)
.++.++.++..+++.....
T Consensus 321 ~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 321 QVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp ECCCCCHHHHHHHHHHTTT
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 221
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.42 E-value=6.8e-05 Score=69.17 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999999888888754 333456799999999999999988765
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.42 E-value=0.00014 Score=75.20 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=82.4
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+.+++.. ...|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHH--
Confidence 4689999888887776541 123347799999999999999999986 22221 111111100
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-----------------hhhhccCCCCCC--CCCC
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-----------------DLAKLGVPFPAI--SKNA 282 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~--~~~g 282 (886)
............ .+......++.+|++||++... .+..+...+... ....
T Consensus 83 --------~~~~~~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (268)
T 2r62_A 83 --------MFVGLGASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP 151 (268)
T ss_dssp --------SCSSSCSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSC
T ss_pred --------hhcchHHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCC
Confidence 000000111111 1222223467899999996421 122222222101 1122
Q ss_pred cEEEEEcCChhhh--hcc---CccceEEccCCChHHHHHHHHHHhcC
Q 035887 283 SKIVFTTRLENVC--GLM---ETQKKFKVECLGDNEAWELFLQKVGE 324 (886)
Q Consensus 283 s~iiiTtR~~~v~--~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 324 (886)
..||.||...... ... .-...+.+...+.++-.+++...+..
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 4566676655321 111 12356788999999999999877643
No 223
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.38 E-value=0.0084 Score=65.16 Aligned_cols=120 Identities=10% Similarity=0.134 Sum_probs=63.1
Q ss_pred cchhhhhccccceEEcCCC--CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccCccccCccCCCEEec
Q 035887 510 EDRRKISLMRNKIVILSKP--PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLPSGVSKLVSLQYLNL 587 (886)
Q Consensus 510 ~~~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 587 (886)
.+++.+.+.. .+..++.. .+|.+|+.+.+..+ ++.+....|.++ .|..+.+..+ ++.++...-...+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccccC
Confidence 3455555543 34444433 56777777777544 666666667766 4555555443 4444432222236777777
Q ss_pred cCCCccccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEecc
Q 035887 588 SETSIKELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLD 637 (886)
Q Consensus 588 ~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 637 (886)
..+ +..+....-.-.+|....+..+ +..+....+..+.+|....+..
T Consensus 121 p~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred CCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 654 3344333222234555554433 3445544456666677666553
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00036 Score=68.53 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=60.9
Q ss_pred hHHHHHHHHhcC----CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 035887 162 TFDKVWRCLIQE----QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENR 237 (886)
Q Consensus 162 ~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 237 (886)
.++.+.+++... ....+.|+|++|+||||||+.+++.. . .....++|++++ .+...+...... .
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~~------~~~~~~~~~~~~---~ 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYVP------ELFRELKHSLQD---Q 104 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEHH------HHHHHHHHC------C
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEhH------HHHHHHHHHhcc---c
Confidence 445555565543 12788999999999999999999987 2 233456677653 344444332221 1
Q ss_pred CHHHHHHHHHHHhccCcEEEEEccccc--hhhhhh--ccC-CCCCCCCCCcEEEEEcCC
Q 035887 238 SLEEKASGIFKILSKKKFLLLLDDIWE--RVDLAK--LGV-PFPAISKNASKIVFTTRL 291 (886)
Q Consensus 238 ~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--l~~-~~~~~~~~gs~iiiTtR~ 291 (886)
....... .+.+. -+|||||++. ...|.. +.. .+......+.++|+||..
T Consensus 105 ~~~~~~~----~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 TMNEKLD----YIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCHHHHH----HHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHHH----HhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1222222 23333 3999999964 223322 111 111011235568888774
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=0.00037 Score=73.78 Aligned_cols=59 Identities=24% Similarity=0.391 Sum_probs=43.7
Q ss_pred ccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 155 TIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
.++|.+..++.+...+... ....+.++|++|+||||+|+.+++... ..-...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 5789999998888887652 135899999999999999999998762 1222345566554
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.35 E-value=0.0012 Score=69.75 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhc--------------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ--------------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999998887754 234567899999999999999999876
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.35 E-value=0.00074 Score=69.53 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=40.2
Q ss_pred ccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 155 TIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
.++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++.. . ..-...+.++++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~-~--~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS-S--RWQGPFISLNCAA 67 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS-T--TTTSCEEEEEGGG
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc-C--ccCCCeEEEecCC
Confidence 579999998888877653 233567799999999999999999876 1 1112345566554
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.32 E-value=0.0036 Score=69.42 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHh---cC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLI---QE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..++++.+.+. .. -.+-|.|+|++|+||||||+.+++.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468999988777666543 11 12458899999999999999999986 2222 34444322110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccch----------------hhhhhccCCCCC-CCCCCcE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWER----------------VDLAKLGVPFPA-ISKNASK 284 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~-~~~~gs~ 284 (886)
.. ..........+.......+.+|++|+++.. ..+..+...+.. ....+..
T Consensus 89 ---------~~---g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 89 ---------FV---GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp ---------CT---THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred ---------Hh---cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 00 001112222334444567899999999541 112222111110 1123556
Q ss_pred EEEEcCChhhhh--ccC---ccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 285 IVFTTRLENVCG--LME---TQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 285 iiiTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
||.||...+... ... -...+.+...+.++-.++++.++.........+ ...+++.+.|..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 777777655422 111 123788888888888888887775432222222 344777888876
No 229
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.31 E-value=0.00017 Score=69.76 Aligned_cols=118 Identities=18% Similarity=0.145 Sum_probs=81.8
Q ss_pred hhhcCCCCCcEEEccCCCccc-----ccCccccCccCCCEEeccCCCcc-----ccchhhhccCCCcEeeccccccccc-
Q 035887 550 DFFDFMPSLKVLNLSKNRSLS-----QLPSGVSKLVSLQYLNLSETSIK-----ELPHELKALTKLKCLNLEYTRYLQK- 618 (886)
Q Consensus 550 ~~~~~l~~Lr~L~Ls~~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~~~~l~~- 618 (886)
..+...+.|++|+|++|..++ .+...+....+|++|+|++|.|. .+...+...++|++|+|++|.. ..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i-~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-SGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-CHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC-CHH
Confidence 346778999999999983333 34556667789999999999886 3566677788999999999863 33
Q ss_pred ----cccccccCCCCCCEEEe--ccCCCcccccccccccCCccchHHHhcCCcCCceEEEEeccch
Q 035887 619 ----IPRQLLCSFSGLEVLRM--LDCGYSRKIAEDSVQFGGSEILVEELITLEHLNVLSVTLKSFG 678 (886)
Q Consensus 619 ----lp~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~ 678 (886)
+... +...++|++|++ .+|..... ........+...+.|+.|++..+.+.
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3333 667788999999 66665321 11123344556677777777766553
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.30 E-value=0.0016 Score=72.67 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHH---hcC--CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCL---IQE--QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998887655444 333 23578899999999999999999876
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.09 E-value=0.0038 Score=73.45 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=97.4
Q ss_pred ccccchhhHHHHHHHHh----c---------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 155 TIVGLDSTFDKVWRCLI----Q---------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
.+.|.++.+++|.+.+. . ...+-|.++|++|.|||+||+.+++.. ..+ .+.++.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 46788888888877653 1 135678999999999999999999886 222 34444321
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh-------------hhhhccCCCCC-CCCCCcEEEE
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------DLAKLGVPFPA-ISKNASKIVF 287 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~-~~~~gs~iii 287 (886)
+. +.........+...+...-+..+.+|++|+++... ....+...+.. ....+-.||.
T Consensus 274 -----l~---sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 274 -----IM---SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp -----HH---SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred -----hh---cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 11 00001122222223333345678999999996310 01111111110 1122334555
Q ss_pred EcCChhhhh-cc----CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhH
Q 035887 288 TTRLENVCG-LM----ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLA 350 (886)
Q Consensus 288 TtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 350 (886)
||...+... .+ .-...+.+...+.++-.++|+.+........+.+ ...|++++.|.--|
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 666543311 11 1235788999999888889887765433222333 35677888876533
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.03 E-value=0.00073 Score=80.87 Aligned_cols=148 Identities=17% Similarity=0.192 Sum_probs=80.9
Q ss_pred CccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQ 224 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (886)
..++|.+..++.+.+.+... ....+.++|++|+|||++|+.+.+... ..-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 46899999999888887641 123689999999999999999998861 222334566654321100
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhc-cCcEEEEEccccch--hhhhhccCC-----CCC-----CCCCCcEEEEEcCC
Q 035887 225 EKIGERIGFLENRSLEEKASGIFKILS-KKKFLLLLDDIWER--VDLAKLGVP-----FPA-----ISKNASKIVFTTRL 291 (886)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~--~~~~~l~~~-----~~~-----~~~~gs~iiiTtR~ 291 (886)
..... .+.+.++ ...-+|+||++... .....+... +.. ......+||.||..
T Consensus 565 -----------~~~~~----~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 -----------STSGG----QLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------ccccc----hhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00001 1112222 23348999999742 222221111 110 01234578888873
Q ss_pred h-----h----hhhcc-----C-ccceEEccCCChHHHHHHHHHHh
Q 035887 292 E-----N----VCGLM-----E-TQKKFKVECLGDNEAWELFLQKV 322 (886)
Q Consensus 292 ~-----~----v~~~~-----~-~~~~~~l~~L~~~e~~~lf~~~~ 322 (886)
. . +...+ . -+..+.+.+++.++...++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 11111 1 12478889998888777776543
No 233
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.03 E-value=0.0012 Score=69.41 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++|++..+.++.+.+.. .....|.|+|.+|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999999998888764 334557799999999999999999865
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.99 E-value=0.042 Score=59.51 Aligned_cols=100 Identities=10% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCCcceeeeecCccccccChhhhcCCCCCcEEEccCCCcccccC-ccccCccCCCEEeccCCCccccchhhhccCCCcE
Q 035887 529 PACPRLLTLFLGINRLDTISSDFFDFMPSLKVLNLSKNRSLSQLP-SGVSKLVSLQYLNLSETSIKELPHELKALTKLKC 607 (886)
Q Consensus 529 ~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~L~~L~~ 607 (886)
....+|+.+.+... ++.++...|.++.+|+.+++..+ ++.++ ..|.++ +|+.+.+.. .++.++...-...+|+.
T Consensus 43 ~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred ccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCccc
Confidence 34567888888654 77888888999999999999765 55554 345555 677777654 36666665434458899
Q ss_pred eeccccccccccccccccCCCCCCEEEec
Q 035887 608 LNLEYTRYLQKIPRQLLCSFSGLEVLRML 636 (886)
Q Consensus 608 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 636 (886)
+.+..+ +..+....+.+. +|..+.+.
T Consensus 118 i~lp~~--~~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 118 FEFPGA--TTEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp EECCTT--CCEECTTTTTTC-CCCEEEEC
T ss_pred ccCCCc--cccccccccccc-eeeeeecc
Confidence 888764 455555544443 56555554
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.87 E-value=0.0069 Score=72.42 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=93.0
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
..++|.+..++++.+++.. .....|.|+|++|+||||||+.+.+.. ...| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3579999999888887752 234578999999999999999998875 2222 3443211
Q ss_pred HHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhccCcEEEEEccccchh-------------hhhhccCCCCC-CCCCCcEE
Q 035887 221 ESVQEKIGERIGFLE-NRSLEEKASGIFKILSKKKFLLLLDDIWERV-------------DLAKLGVPFPA-ISKNASKI 285 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~-~~~~gs~i 285 (886)
+.... ......+...+.......+.++++|++.... ....+...+.. ....+-.|
T Consensus 274 ----------l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ----------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ----------HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ----------hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 11110 1111122223333344578899999994210 01111111110 11233455
Q ss_pred EEEcCChhhhh-cc----CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 286 VFTTRLENVCG-LM----ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 286 iiTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
|.||....... .+ .-...+.+...+.++-.+++...+.........++ ..+++.+.|..
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 66665543211 11 11245788888999999999877654332222233 34445555543
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.027 Score=58.15 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=88.1
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
+.++|.+..++++.+.... .-.+-+.|+|+.|+||||||+.++... . ...+.+..+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~-----~~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T-----CCEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C-----CCEEEecHH------
Confidence 4688988777666554321 011238999999999999999999876 2 223344321
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccch------------h----hhhhccCCCCCCC--CCC
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWER------------V----DLAKLGVPFPAIS--KNA 282 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------------~----~~~~l~~~~~~~~--~~g 282 (886)
.+. .... .........+.+.. ...+.++|+|++... . ....+...+. .+ ...
T Consensus 108 ~~~----~~~~----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls-gg~~~~~ 178 (278)
T 1iy2_A 108 DFV----EMFV----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD-GFEKDTA 178 (278)
T ss_dssp HHH----HSTT----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT-TCCTTCC
T ss_pred HHH----HHHh----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh-CCCCCCC
Confidence 111 1000 00111112222222 245689999999521 0 1111211111 11 112
Q ss_pred cEEEEEcCChhhhh-----ccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 283 SKIVFTTRLENVCG-----LMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 283 s~iiiTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
..++.||...++.. ...-...+.+...+.++-.+++...+.........+ ...+++.+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 33444666554421 112345788999999888888887764322112222 335666777654
No 237
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.033 Score=57.17 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=81.6
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
.++.|.++.+++|.+.+.. .-.+-+.++|++|.||||||+.++... . . ..+++..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 4578888888877765421 112238999999999999999999876 2 1 2445543322110
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccchh---------h----hhhccCCCCC-CCCCCcEE
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWERV---------D----LAKLGVPFPA-ISKNASKI 285 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~----~~~l~~~~~~-~~~~gs~i 285 (886)
. ..........+.+.. ...+.++++|+++... . ...+...+.. ......-+
T Consensus 84 ~--------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 84 Y--------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp T--------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred h--------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 0 000011112222222 3467899999986310 0 0111111110 01123445
Q ss_pred EEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhc
Q 035887 286 VFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVG 323 (886)
Q Consensus 286 iiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~ 323 (886)
+.+|...++... . .-...+.+...+.++-.++|+....
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 567766655321 1 2345788999999999999988764
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.76 E-value=0.037 Score=56.13 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=87.4
Q ss_pred CccccchhhHHHHHHHHh---c---------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLI---Q---------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
+.++|.+..+.++.+... . .-.+-+.|+|+.|+||||||+.+++.. . ...+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~-----~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T-----CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C-----CCEEEeeHH------
Confidence 467898877666655432 1 011238999999999999999999876 2 123333321
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHh-ccCcEEEEEccccchh------------h----hhhccCCCCCC-CCCCc
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKIL-SKKKFLLLLDDIWERV------------D----LAKLGVPFPAI-SKNAS 283 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~-~~~gs 283 (886)
.+ .... ..........+.+.. ...+.++++|++.... . ...+...+... .....
T Consensus 84 ~~----~~~~----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 84 DF----VEMF----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp HH----HHSC----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred HH----HHHH----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 1100 000111112222222 2356899999994210 0 11221111100 11223
Q ss_pred EEEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 284 KIVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 284 ~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
-++.||...++... . .-...+.+...+.++-.+++...+.........+ ...+++.+.|.-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 44456666554221 1 2234688999999888888887664322112222 235666776653
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.66 E-value=0.008 Score=68.44 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=36.0
Q ss_pred CccccchhhHHHHHHHHhc------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.+..++.+.+.+.- ....++.++|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468888877777655431 245689999999999999999999876
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.65 E-value=0.0011 Score=68.73 Aligned_cols=69 Identities=16% Similarity=0.333 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcc
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV--SKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSK 252 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 252 (886)
.+++.|+|++|+||||||.++.... . ..++|+++ .+..+. . ..+.++....+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v~~-------------~-~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPLSG-------------Y-NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSSTT-------------C-BCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhhhh-------------h-hcCHHHHHHHHHHHHhh
Confidence 3577899999999999999998752 1 12445655 222110 0 13556666667777777
Q ss_pred CcEEEEEccccc
Q 035887 253 KKFLLLLDDIWE 264 (886)
Q Consensus 253 k~~LlVlDdv~~ 264 (886)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 77 999999853
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.61 E-value=0.005 Score=65.45 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++.|+|++|+||||||.++..... ..-..++|++....++.. .++.++... ..+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 457999999999999999999998762 122457899887777654 455565432 44566666666
Q ss_pred HHHhc-cCcEEEEEccccc
Q 035887 247 FKILS-KKKFLLLLDDIWE 264 (886)
Q Consensus 247 ~~~l~-~k~~LlVlDdv~~ 264 (886)
...++ .+.-++|+|.+-.
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 66554 4556889998743
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.56 E-value=0.024 Score=63.24 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=91.8
Q ss_pred CccccchhhHHHHHHHHh---cC---------CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 154 PTIVGLDSTFDKVWRCLI---QE---------QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
..++|.+..+.++.+... .. -.+-+.|+|++|+||||||+.++... . ...+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-~-----~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-T-----CCEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-C-----CCEEEEehhHHHH--
Confidence 468999887777665542 21 12348999999999999999999876 2 2234444432111
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcc----CcEEEEEccccch------------h----hhhhccCCCCC-CCC
Q 035887 222 SVQEKIGERIGFLENRSLEEKASGIFKILSK----KKFLLLLDDIWER------------V----DLAKLGVPFPA-ISK 280 (886)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdv~~~------------~----~~~~l~~~~~~-~~~ 280 (886)
.........++..++. .+.++++|+++.. . ....+...+.. ...
T Consensus 103 ---------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 103 ---------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp ---------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred ---------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 0001112233444433 3579999999531 0 11122111110 112
Q ss_pred CCcEEEEEcCChhhhhc--c---CccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCch
Q 035887 281 NASKIVFTTRLENVCGL--M---ETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGLP 348 (886)
Q Consensus 281 ~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 348 (886)
.+..|+.||...++... . .-...+.+...+.++-.++++.++.........+ ...|++.+.|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 23455556666654221 1 1235788999999888888887664322111112 345667777765
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.39 E-value=0.0062 Score=60.36 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----------CCCC---H
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFL-----------ENRS---L 239 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----------~~~~---~ 239 (886)
.-.++.|+|++|+||||||..+.. . . -..++|++....++...+.. +.+..+.. ...+ .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 456999999999999999999987 3 1 24688888777566655543 33333221 1111 1
Q ss_pred HHHHHHHHHHhccCcEEEEEcccc
Q 035887 240 EEKASGIFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 240 ~~~~~~l~~~l~~k~~LlVlDdv~ 263 (886)
.+....++..+..+.-+||+|.+.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 233444444444446788888764
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.33 E-value=0.0073 Score=72.29 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999998888877531 23478999999999999999999876
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.25 E-value=0.014 Score=60.17 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=56.0
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHH-HHHHH
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEK-ASGIF 247 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~-~~~l~ 247 (886)
.++-|+|++|+||||||.++..... ....-..++|++....++.. .+++++... ..+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 3789999999999999999887762 11123578999988887754 367777543 3455555 33332
Q ss_pred HH--h-ccCcEEEEEcccc
Q 035887 248 KI--L-SKKKFLLLLDDIW 263 (886)
Q Consensus 248 ~~--l-~~k~~LlVlDdv~ 263 (886)
.. + +++.-++|+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 3567899999884
No 246
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.20 E-value=0.011 Score=63.10 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++.|.|.+|+||||||.++..... ..-..++|++....++.. .++.++... ..+.++..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 457899999999999999999887762 123468999988777643 244555432 23455555555
Q ss_pred HHHhc-cCcEEEEEcccc
Q 035887 247 FKILS-KKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~-~k~~LlVlDdv~ 263 (886)
....+ .+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 54443 345589999874
No 247
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.18 E-value=0.012 Score=62.95 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++.|+|.+|+||||||.++..... ..-..++|++....++.. .++.++... ..+.++..+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 446899999999999999999887762 123478999988776654 245555432 34566666666
Q ss_pred HHHhcc-CcEEEEEcccc
Q 035887 247 FKILSK-KKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~-k~~LlVlDdv~ 263 (886)
....+. ..-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 665543 45589999874
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.18 E-value=0.023 Score=60.01 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----------CCCH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAP---NNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-----------NRSL 239 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~ 239 (886)
.-.++.|+|++|+||||||.++........ ..-..++|++....++...+. ++++.++... ..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 457999999999999999999887651110 013578999998887777665 3455555421 1222
Q ss_pred H---HHHHHHHHHhc--cCcEEEEEcccc
Q 035887 240 E---EKASGIFKILS--KKKFLLLLDDIW 263 (886)
Q Consensus 240 ~---~~~~~l~~~l~--~k~~LlVlDdv~ 263 (886)
+ ++...+...++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23444555554 345577888764
No 249
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.13 E-value=0.0081 Score=72.67 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHHhcC---------CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQE---------QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999888888877531 12578999999999999999999876
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.10 E-value=0.014 Score=62.28 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++.|+|++|+||||||.++..... ..-..++|++....++.. .++.++... ..+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999999887762 123468999988776653 245555432 33556655555
Q ss_pred HHHhc-cCcEEEEEcccc
Q 035887 247 FKILS-KKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~-~k~~LlVlDdv~ 263 (886)
....+ .+.-+||+|.+-
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 55544 346699999874
No 251
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.10 E-value=0.027 Score=56.58 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----------CCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPN----NFEVVIWVVVSKDMQLESVQEKIGERIGFLE-----------NRS 238 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~ 238 (886)
.-.++.|+|++|+|||||+..+.... .... .-..++|+.....+....+. ++++.++... ..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 45799999999999999999998863 1111 23578999887765555443 3444554321 122
Q ss_pred HHHH---HHHHHHHhc-cCcEEEEEcccc
Q 035887 239 LEEK---ASGIFKILS-KKKFLLLLDDIW 263 (886)
Q Consensus 239 ~~~~---~~~l~~~l~-~k~~LlVlDdv~ 263 (886)
..+. ...+.+.+. .+.-+||+|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2322 233444444 356688888774
No 252
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.94 E-value=0.0096 Score=61.98 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.92 E-value=0.03 Score=59.58 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPN----NFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.-.++.|+|++|+||||||.+++... .... .-..++|++....++...+. +++..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45799999999999999999988874 1111 23578999998887776654 34555543
No 254
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.85 E-value=0.072 Score=56.75 Aligned_cols=163 Identities=9% Similarity=-0.078 Sum_probs=98.1
Q ss_pred HHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 035887 166 VWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASG 245 (886)
Q Consensus 166 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (886)
+.+.+...-.++..++|+.|.||++.|+.+..... ...|+....+.+....+..++.. .
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~-------------------~ 67 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFS-------------------L 67 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHH-------------------H
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHH-------------------H
Confidence 44445434567899999999999999999888652 12343322223333334433332 2
Q ss_pred HHH-HhccCcEEEEEccccc---hhhhhhccCCCCCCCCCCcEEEEEcCC-------hhhhhc-cCccceEEccCCChHH
Q 035887 246 IFK-ILSKKKFLLLLDDIWE---RVDLAKLGVPFPAISKNASKIVFTTRL-------ENVCGL-METQKKFKVECLGDNE 313 (886)
Q Consensus 246 l~~-~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~~gs~iiiTtR~-------~~v~~~-~~~~~~~~l~~L~~~e 313 (886)
+.. -+.+++-++|+|++.. ...++.+...+. ....++.+|++|.. ..+... ......++..+++.++
T Consensus 68 ~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 68 CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp HHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred hcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 221 1345677888898854 234444443333 33446777766543 223222 3345688999999999
Q ss_pred HHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 035887 314 AWELFLQKVGEETLGSHPDIPELAKTVAKECCGLPLALIT 353 (886)
Q Consensus 314 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 353 (886)
....+.+.+....... -.+.+..+++.++|...++..
T Consensus 147 l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 147 LPRWVAARAKQLNLEL---DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHH
Confidence 9988888764322111 145678899999998887754
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.81 E-value=0.0087 Score=62.75 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHhcC---CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe
Q 035887 160 DSTFDKVWRCLIQE---QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV 214 (886)
Q Consensus 160 ~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 214 (886)
...++.+.+++... ....+.|+|++|+|||+||+.+++.. .. .....+.++++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~-~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL-SE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH-HH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH-HH-hcCCcEEEEEH
Confidence 33445555666542 24688899999999999999999987 20 12234566654
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.54 E-value=0.0073 Score=57.75 Aligned_cols=110 Identities=18% Similarity=0.083 Sum_probs=61.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC---CCHHHHHHHHHHHhCCCC----------CC----
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD---MQLESVQEKIGERIGFLE----------NR---- 237 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l~~~~----------~~---- 237 (886)
-..|-|++..|.||||.|-...-+. ..+-..+.++..-.. .+...++.. ++... ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHH
Confidence 3556677777799999999988876 345556777765442 233344433 32100 00
Q ss_pred ---CHHHHHHHHHHHhccCcE-EEEEccccchh-----hhhhccCCCCCCCCCCcEEEEEcCCh
Q 035887 238 ---SLEEKASGIFKILSKKKF-LLLLDDIWERV-----DLAKLGVPFPAISKNASKIVFTTRLE 292 (886)
Q Consensus 238 ---~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~-----~~~~l~~~~~~~~~~gs~iiiTtR~~ 292 (886)
........+++.+...+| |||||++-... +.+++...+. .......||+|+|..
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 112223345555655555 99999984321 1222222222 233467899999985
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.48 E-value=0.012 Score=57.30 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHhc---CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 159 LDSTFDKVWRCLIQ---EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 159 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|++.++++.+.+.. ....+|+|.|+.|+||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55667777777764 355799999999999999999998765
No 258
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.48 E-value=0.05 Score=57.49 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=53.1
Q ss_pred HHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCC-----CC
Q 035887 165 KVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ-LESVQEKIGERIGFLE-----NR 237 (886)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~~ 237 (886)
++++.+.. ..-..++|+|+.|+|||||++.+.+........+++ +++-+.+... +.+ +.+.+...- +.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~----~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTE----MQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHH----HHTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHH----HHHHhCeEEEEeCCCC
Confidence 45555544 456799999999999999999988764211233443 3566665432 222 222221100 11
Q ss_pred CHHHH------HHHHHHHh--ccCcEEEEEccccc
Q 035887 238 SLEEK------ASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 238 ~~~~~------~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
..... .-.+.+++ +++.+||++||+-.
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 21111 11122333 47899999999954
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.45 E-value=0.044 Score=57.83 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCC---------CCC----CeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAP---------NNF----EVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.-.++.|+|.+|+||||+|.+++....... ..- ..++|++....++..++.. +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 457999999999999999999887631000 111 5789999988887776663 4555654
No 260
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.44 E-value=0.0053 Score=60.63 Aligned_cols=110 Identities=15% Similarity=0.004 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE----NRSLEEKASGIFKI 249 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~l~~~ 249 (886)
.-.++.|+|..|+||||++..+..+. . .+-..++.+....+. . ...++++.++... .....++.+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~--~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-E--YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-H--HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 45788999999999999999988887 2 233345555433321 1 1224455555432 22334455555555
Q ss_pred hccCcE-EEEEccccc--hhhhhhccCCCCCCCCCCcEEEEEcCChh
Q 035887 250 LSKKKF-LLLLDDIWE--RVDLAKLGVPFPAISKNASKIVFTTRLEN 293 (886)
Q Consensus 250 l~~k~~-LlVlDdv~~--~~~~~~l~~~~~~~~~~gs~iiiTtR~~~ 293 (886)
+.+.++ +||+|.+.. .+..+.+.. +. ..|-.||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~---~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LA---ENGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HH---HTTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HH---hCCCeEEEEecccc
Confidence 544445 999999863 233333322 11 12678999988644
No 261
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.37 E-value=0.073 Score=57.58 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDA---PNNFEVVIWVVVSKDMQLESVQEKIGERIGF 233 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (886)
.-.++.|+|++|+|||||+..++-..... ...-..++|++....+....+. .+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 45799999999999999999876433110 1134578999887766655543 36666654
No 262
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.37 E-value=0.021 Score=51.13 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=15.2
Q ss_pred CCCEEeccCCCccccchh-hhccCCCcEeecccc
Q 035887 581 SLQYLNLSETSIKELPHE-LKALTKLKCLNLEYT 613 (886)
Q Consensus 581 ~L~~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~ 613 (886)
+|++|+|++|.|+.||.. +..+.+|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444444444433 344444444444444
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.24 E-value=0.062 Score=53.41 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhcc--CC-CCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLD--AP-NNFEVVIWVVVSKDMQLESVQEKIGERIG 232 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (886)
.-.+++|+|+.|+|||||++.+...... .. ..-..++|+.....+.... ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4579999999999999999999875411 00 1234688887665444333 233444443
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.16 E-value=0.055 Score=56.11 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE--NRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 250 (886)
...+|+|+|++|+||||++..+.... ... .-..+..+..... ....+.+....+..+.+. ..+..++...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h
Confidence 45799999999999999999998876 211 1234566654321 223333444444444332 2334444444443 3
Q ss_pred ccCcEEEEEccc
Q 035887 251 SKKKFLLLLDDI 262 (886)
Q Consensus 251 ~~k~~LlVlDdv 262 (886)
.+.=++++|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 34457778843
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.13 E-value=0.044 Score=58.44 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----------CCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNN----FEVVIWVVVSKDMQLESVQEKIGERIGFLE-----------NRS 238 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~ 238 (886)
.-.++.|+|+.|+|||||+..+.... ..... -..++|++....+....+ ..+++..+... ..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45799999999999999999998765 11111 135689987666544433 33444433211 111
Q ss_pred ---HHHHHHHHHHHhc------cCcEEEEEccccc
Q 035887 239 ---LEEKASGIFKILS------KKKFLLLLDDIWE 264 (886)
Q Consensus 239 ---~~~~~~~l~~~l~------~k~~LlVlDdv~~ 264 (886)
..++...+...+. .+.=+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 2233444455554 3667888888743
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.11 E-value=0.082 Score=57.61 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...||.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998876
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.02 E-value=0.017 Score=56.70 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.7
Q ss_pred hHHHHHHHHhc--CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 162 TFDKVWRCLIQ--EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-.++|.+.+.. ....+|+|+|+.|.|||||++.+..-.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555543 356799999999999999999998876
No 268
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.97 E-value=0.055 Score=53.83 Aligned_cols=84 Identities=23% Similarity=0.218 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------------
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE------------------ 235 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 235 (886)
.-.+++|+|++|+|||||++.+...... .-..++|+.... ....+...+ ..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEecccccc
Confidence 3468999999999999999999876521 123466766533 344444333 2333211
Q ss_pred -------CCCHHHHHHHHHHHhcc-CcE--EEEEcccc
Q 035887 236 -------NRSLEEKASGIFKILSK-KKF--LLLLDDIW 263 (886)
Q Consensus 236 -------~~~~~~~~~~l~~~l~~-k~~--LlVlDdv~ 263 (886)
..+..++...+.+.+.. +.- +||+|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 11445555555554432 444 89999875
No 269
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.96 E-value=0.061 Score=63.30 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=78.2
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCH
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQL 220 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (886)
..+.|.++.+++|.+.+.- ...+-|.++|++|.|||.+|+++++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 4567888888887766531 123457899999999999999999987 222 23332 1
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhccCcEEEEEccccchh--------h--------hhhccCCCCCCCCCCcE
Q 035887 221 ESVQEKIGERIGFLENRSLEEKASGIFKILSKKKFLLLLDDIWERV--------D--------LAKLGVPFPAISKNASK 284 (886)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--------~~~l~~~~~~~~~~gs~ 284 (886)
.+ ++.... ..+...+...+...-+..+.+|++|+++... + ..++...+.........
T Consensus 545 ~~----l~s~~v---Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V 617 (806)
T 3cf2_A 545 PE----LLTMWF---GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp HH----HHTTTC---SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSE
T ss_pred ch----hhcccc---chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 111111 2333333333333334578999999996310 0 11111111101122223
Q ss_pred EEE-EcCChhh-----hhccCccceEEccCCChHHHHHHHHHHhcCCcCCCCCChHHHHHHHHHHcCCc
Q 035887 285 IVF-TTRLENV-----CGLMETQKKFKVECLGDNEAWELFLQKVGEETLGSHPDIPELAKTVAKECCGL 347 (886)
Q Consensus 285 iii-TtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 347 (886)
+|| ||..... .+.-.-...+.+...+.++-.++|+.+..+.....+-++ ..+++.+.|.
T Consensus 618 ~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp EEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred EEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 444 5543332 221123457778777777777788776643322222233 4455666654
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.95 E-value=0.092 Score=57.10 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHH--HHHHHHHhCCCC-----CCCHHHHHHHHH
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESV--QEKIGERIGFLE-----NRSLEEKASGIF 247 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~--~~~i~~~l~~~~-----~~~~~~~~~~l~ 247 (886)
..+|.|+|++|+||||++..+.... .. .-..+..+.. +.+..... +....+..+.+. ..+..++.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l-~~--~g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KG--KGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH-HT--TTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 4789999999999999999999887 22 2234555554 33333322 344445554432 223444433333
Q ss_pred HHhccCcE-EEEEcc
Q 035887 248 KILSKKKF-LLLLDD 261 (886)
Q Consensus 248 ~~l~~k~~-LlVlDd 261 (886)
+.++...| ++|+|-
T Consensus 174 ~~~~~~~~DvVIIDT 188 (425)
T 2ffh_A 174 EKARLEARDLILVDT 188 (425)
T ss_dssp HHHHHTTCSEEEEEC
T ss_pred HHHHHCCCCEEEEcC
Confidence 33332333 566664
No 271
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.90 E-value=0.06 Score=55.81 Aligned_cols=85 Identities=19% Similarity=0.182 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHH
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE-----NRSLEEKASGIFK 248 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~~ 248 (886)
..+|+++|.+|+||||++..+.... . ..-..+.++...... .....+....+..+.+- ..+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-K--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-H--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 5789999999999999999998876 2 223356666654322 22233444555555432 2345555444444
Q ss_pred HhccCcE-EEEEccc
Q 035887 249 ILSKKKF-LLLLDDI 262 (886)
Q Consensus 249 ~l~~k~~-LlVlDdv 262 (886)
.++.+.| ++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4543333 6777754
No 272
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.89 E-value=0.019 Score=60.92 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++|++..++.+...+..+ .-+.++|++|+|||++|+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 36799999999988887764 357799999999999999999876
No 273
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.75 E-value=0.1 Score=56.93 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=62.8
Q ss_pred HHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------C-
Q 035887 165 KVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFL------E- 235 (886)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~- 235 (886)
++++.+.. .+-..++|.|..|+|||+|++.+.++.. +.+-+.++++-+.+.. ...++.+++.+.=... .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 35555543 4567899999999999999999998751 3345667788777654 4566777776542221 1
Q ss_pred -------CCCHHH------HHHHHHHHhc---cCcEEEEEcccc
Q 035887 236 -------NRSLEE------KASGIFKILS---KKKFLLLLDDIW 263 (886)
Q Consensus 236 -------~~~~~~------~~~~l~~~l~---~k~~LlVlDdv~ 263 (886)
+..... ..-.+.++++ ++.+||++||+-
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 222111 1223445544 589999999984
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.64 E-value=0.07 Score=55.46 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCC-----CCCHHHH-HHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE--SVQEKIGERIGFLE-----NRSLEEK-ASG 245 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~-----~~~~~~~-~~~ 245 (886)
...+|+|+|++|+||||++..++... .. .-..+.++... .+... +-+...++..+.+. ..+...+ ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~--~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VD--EGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HH--TTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hh--cCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 45799999999999999999998876 22 22345555543 33322 22334555555432 2233332 234
Q ss_pred HHHHhccCcEEEEEcccc
Q 035887 246 IFKILSKKKFLLLLDDIW 263 (886)
Q Consensus 246 l~~~l~~k~~LlVlDdv~ 263 (886)
+...+....-++++|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555588888653
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.58 E-value=0.16 Score=53.19 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.-.++.|.|.+|+||||+|..++.+. .... ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 45789999999999999999998776 2222 678888765 55677777766553
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.54 E-value=0.018 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 443
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.53 E-value=0.019 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.51 E-value=0.019 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999876
No 279
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.44 E-value=0.042 Score=49.10 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=47.4
Q ss_pred CEEeccCCCcc--ccchhhhccCCCcEeeccccccccccccccccCCCCCCEEEeccCCCc
Q 035887 583 QYLNLSETSIK--ELPHELKALTKLKCLNLEYTRYLQKIPRQLLCSFSGLEVLRMLDCGYS 641 (886)
Q Consensus 583 ~~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 641 (886)
..++.++..++ .+|..+. .+|++|+|++|. +..+|.+++..+++|++|++.+|+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 47788888888 8887643 579999999996 79999998899999999999988753
No 280
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.43 E-value=0.12 Score=56.52 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCC-----CCCHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGERIGFLE-----NRSLEEKASGIF 247 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~ 247 (886)
..++|.++|.+|+||||++..+.... ... +-..+.-+++... ......+.......+.+. ..+..++.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~-~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL-REK-HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH-HHT-SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHh-cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 46799999999999999999999877 222 1335666665432 233333333444444321 234444433333
Q ss_pred HHhccCcE-EEEEccc
Q 035887 248 KILSKKKF-LLLLDDI 262 (886)
Q Consensus 248 ~~l~~k~~-LlVlDdv 262 (886)
..++.+.| ++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 44442333 6666764
No 281
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.41 E-value=0.12 Score=56.52 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=63.1
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C-
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFL-------E- 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~- 235 (886)
+++.|.. .+-..++|.|..|+|||+|++.+.++.. +.+-+.++++-+.+.. ...++.+++.+.=... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4455543 4567899999999999999999998751 3455778888887765 4566676766532111 1
Q ss_pred -------CCCH------HHHHHHHHHHhc---cCcEEEEEcccc
Q 035887 236 -------NRSL------EEKASGIFKILS---KKKFLLLLDDIW 263 (886)
Q Consensus 236 -------~~~~------~~~~~~l~~~l~---~k~~LlVlDdv~ 263 (886)
+... ....-.+.++++ ++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1111 122334556665 589999999984
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.36 E-value=0.036 Score=55.01 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 162 TFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555555678899999999999999999998875
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.29 E-value=0.022 Score=54.34 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-.+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.29 E-value=0.11 Score=52.01 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
.-.++.|.|++|+||||||.++..... ..-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 346899999999999999988876652 1234678887654
No 285
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.29 E-value=0.029 Score=62.59 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=37.0
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 5799999998888877654 467799999999999999999876
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.26 E-value=0.024 Score=55.09 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 287
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.18 E-value=0.044 Score=57.62 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=32.4
Q ss_pred ccchhhHHHHHHHHh----cCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 157 VGLDSTFDKVWRCLI----QEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 157 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
|+.+.-.+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 444555666666654 3556779999999999999999988765
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.17 E-value=0.023 Score=54.79 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+||||+++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998753
No 289
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.16 E-value=0.16 Score=52.93 Aligned_cols=78 Identities=22% Similarity=0.168 Sum_probs=43.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHH--HHHHhCCCCCCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEK--IGERIGFLENRSLEEKASGIFKIL 250 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~--i~~~l~~~~~~~~~~~~~~l~~~l 250 (886)
...+|+|.|+.|+||||+|+.+..-. .....-..+..+....-+ .... +.. +....+.+..-+.+.+.+.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll-~~~~~~~~v~~i~~D~f~~~~~~-l~~~~~~~~~g~P~~~D~~~l~~~L~~L~ 168 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL-SRWPDHPNVEVITTDGFLYSNAK-LEKQGLMKRKGFPESYDMPSLLRVLNAIK 168 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-TTSTTCCCEEEEEGGGGBCCHHH-HHHTTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh-cccCCCCeEEEEeecccccchhh-hhhHHHHhhccCcccccHHHHHHHHHhhh
Confidence 45599999999999999999988765 211111234555543322 2222 111 111223333556666666666665
Q ss_pred ccC
Q 035887 251 SKK 253 (886)
Q Consensus 251 ~~k 253 (886)
.++
T Consensus 169 ~g~ 171 (321)
T 3tqc_A 169 SGQ 171 (321)
T ss_dssp TTC
T ss_pred ccc
Confidence 555
No 290
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.10 E-value=0.023 Score=60.80 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++|.+..+..+...+......-+.|+|++|+|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589998866655444433333448899999999999999999876
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.09 E-value=0.027 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 292
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.08 E-value=0.14 Score=55.92 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=54.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCC--------CC
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGF--------LE 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~ 235 (886)
.++.|.. .+-..++|+|..|+|||||+..+..+. .. ..-+.++++-+.+.. ...++..++.+.=.. ..
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~ 218 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM 218 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence 3444443 234578999999999999999998876 21 122445666666553 344555545332000 00
Q ss_pred CCCHHHH------HHHHHHHh---ccCcEEEEEcccc
Q 035887 236 NRSLEEK------ASGIFKIL---SKKKFLLLLDDIW 263 (886)
Q Consensus 236 ~~~~~~~------~~~l~~~l---~~k~~LlVlDdv~ 263 (886)
.+..... .-.+.+++ +++.+|+++||+.
T Consensus 219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1111111 11334443 4789999999994
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.06 E-value=0.027 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchhHHHHHHHHH
Q 035887 176 GIIGLHGMGGVGKTTLLTQINN 197 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~ 197 (886)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 294
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.06 E-value=0.039 Score=59.44 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHHhc---------------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQ---------------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|.+..++.+...+.. .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999888887731 134568899999999999999999876
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.03 E-value=0.37 Score=50.61 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.-.++.|.|.+|+||||+|..++..... .-..++|++. ..+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 4468999999999999999999888622 3346777765 456677777776554
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.02 E-value=0.046 Score=56.49 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|+|+|+.|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988776
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.00 E-value=0.023 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 298
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.99 E-value=0.042 Score=59.51 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhc------------------------------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ------------------------------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3578988888888776620 123468899999999999999999876
No 299
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.99 E-value=0.23 Score=52.47 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=29.0
Q ss_pred HHHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 164 DKVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 164 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-++++.+.. +.-..++|+|.+|+|||+|++++.+..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 356666654 456789999999999999999988865
No 300
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.87 E-value=0.038 Score=54.62 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 158 GLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++..+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455555555555678899999999999999999998875
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.85 E-value=0.038 Score=53.72 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|+|+|+.|.||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 302
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.83 E-value=0.17 Score=52.39 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHH--HHHHHHHHhCCCC-----CCCHHHHHH-HH
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLES--VQEKIGERIGFLE-----NRSLEEKAS-GI 246 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~-----~~~~~~~~~-~l 246 (886)
..+++|+|.+|+||||++..++... .. .-..+.++.... +.... .+..+.+..+... ..+..++.. .+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~-~~--~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KG--KGRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH-HH--TTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEecCCc-ccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999998876 22 223455555432 22221 2334445555432 234445533 33
Q ss_pred HHHhccCcEEEEEccc
Q 035887 247 FKILSKKKFLLLLDDI 262 (886)
Q Consensus 247 ~~~l~~k~~LlVlDdv 262 (886)
........=++++|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333345557788865
No 303
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.80 E-value=0.11 Score=66.79 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------CCCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFL-------ENRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~l 246 (886)
..++|.|+|++|+|||+||.++.... ...-..++|+++...++... ++.++.. .....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 56799999999999999999998876 23445788998888777666 4455422 133445555666
Q ss_pred HHHhc-cCcEEEEEcccc
Q 035887 247 FKILS-KKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~-~k~~LlVlDdv~ 263 (886)
++..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 65554 466799999984
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.74 E-value=0.19 Score=54.77 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|.++|++|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998876
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.73 E-value=0.034 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999887
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.72 E-value=0.027 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 307
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.70 E-value=0.036 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.66 E-value=0.033 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 309
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.65 E-value=0.0073 Score=72.16 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ-------------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.+..++.+.+.+.- .....+.++|++|+||||||+.+++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3568888888888877642 133568899999999999999999987
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.64 E-value=0.032 Score=53.13 Aligned_cols=25 Identities=44% Similarity=0.469 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999876
No 311
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.62 E-value=0.23 Score=52.05 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGERIGF 233 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 233 (886)
....+++|+|+.|+||||+++.+.... +. .-..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l-~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL-KN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH-HH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-Hh--cCCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 456899999999999999999998876 22 122344444322 12333444555555553
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.59 E-value=0.036 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.58 E-value=0.039 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998765
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.57 E-value=0.038 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.56 E-value=0.041 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.55 E-value=0.031 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 317
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.54 E-value=0.039 Score=54.06 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998876
No 318
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.53 E-value=0.038 Score=52.52 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=21.1
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 319
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.52 E-value=0.026 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.|.|+|+.|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998775
No 320
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.50 E-value=0.04 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.50 E-value=0.039 Score=55.94 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|+.|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.46 E-value=0.04 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchhHHHHHHHHHh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.43 E-value=0.035 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998875
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.42 E-value=0.034 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 325
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.41 E-value=0.13 Score=54.67 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=62.5
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcc
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILSK 252 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 252 (886)
..-.+++|+|+.|.||||+.+.+..... .. .-..++.+.-.-.+..... ..++.+... ..........+...|..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~-~~~~i~t~ed~~e~~~~~~-~~~v~q~~~--~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN-NT-KYHHILTIEDPIEFVHESK-KCLVNQREV--HRDTLGFSEALRSALRE 195 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH-HH-CCCEEEEEESSCCSCCCCS-SSEEEEEEB--TTTBSCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc-CC-CCcEEEEccCcHHhhhhcc-ccceeeeee--ccccCCHHHHHHHHhhh
Confidence 3446999999999999999999877551 10 0112222211111100000 000000000 11112334478888889
Q ss_pred CcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhhh
Q 035887 253 KKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENVC 295 (886)
Q Consensus 253 k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v~ 295 (886)
.+=+|++|+..+.+.++.+.... ..|.-|++||-..+.+
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAA----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHH----hcCCEEEEEEccChHH
Confidence 99999999998776655433221 2355688888876543
No 326
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.41 E-value=0.045 Score=53.72 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.+||.|.|++|+||||.|+.+...+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999887
No 327
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.36 E-value=0.043 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999765
No 328
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.32 E-value=0.046 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998875
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.32 E-value=0.046 Score=52.81 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.30 E-value=0.042 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.6
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999887
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.26 E-value=0.048 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
...+|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 332
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.24 E-value=0.035 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQIN 196 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~ 196 (886)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.23 E-value=0.047 Score=53.29 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 334
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.23 E-value=0.31 Score=53.60 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+++|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45699999999999999999998876
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.22 E-value=0.076 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.22 E-value=0.044 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 337
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.22 E-value=0.037 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.19 E-value=0.049 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.16 E-value=0.037 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.14 E-value=0.059 Score=58.78 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHhc--------------CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQ--------------EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|.++.++.+...+.. ...+-|.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679998888888766632 124568899999999999999999886
No 341
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.14 E-value=0.045 Score=53.30 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchhHHHHHHHHH
Q 035887 176 GIIGLHGMGGVGKTTLLTQINN 197 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~ 197 (886)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.12 E-value=0.054 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998775
No 343
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.11 E-value=0.072 Score=55.69 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
++.+||+|.|-|||||||.+..+..-.. ..-..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 4789999999999999999999888772 2334577777654
No 344
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.09 E-value=0.18 Score=48.75 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=31.2
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
.|+|=|.-|+||||.++.+.+.. +. ....+++..-..........++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L-~~--~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL-EK--RGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH--CCCcEEEEECCCCCcHHHHHHHHh
Confidence 47788999999999999999987 22 223344444333333444444444
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.09 E-value=0.053 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 346
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.04 E-value=0.23 Score=54.25 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=55.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHH-HHHHHhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLL-TQINNKFLDAPNNFEVVIWVVVSKDM-QLESVQEKIGERIGFLE------- 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------- 235 (886)
.++.+.. .+-.-++|.|..|+|||+|| ..+.+.. ..-..++++-+.+.. ...++.+++.+.=....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4444443 45567899999999999997 4565543 222245777777764 45566666544311111
Q ss_pred -CCCHHH------HHHHHHHHh--ccCcEEEEEccccc
Q 035887 236 -NRSLEE------KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 236 -~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
+..... ..-.+.+++ +++.+||++||+-.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 111111 111233444 47899999999853
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.98 E-value=0.052 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.97 E-value=0.054 Score=51.80 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 349
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.96 E-value=0.058 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++++|+|+.|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999876
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.92 E-value=0.056 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999997754
No 351
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.89 E-value=0.061 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.+..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999998764
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.88 E-value=0.045 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.87 E-value=0.083 Score=53.50 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.85 E-value=0.047 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.82 E-value=0.05 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHH
Q 035887 176 GIIGLHGMGGVGKTTLLTQINN 197 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~ 197 (886)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 356
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.82 E-value=0.11 Score=56.94 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=55.7
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHH-HHHHhhccCCCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCC------
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLT-QINNKFLDAPNNFE-VVIWVVVSKDM-QLESVQEKIGERIGFLE------ 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------ 235 (886)
.++.+.. .+-.-++|.|..|+|||+||. .+.+.. .-+ .++++-+.+.. ...++.+++.+.=....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4455443 455678999999999999965 666654 234 34677777654 45556666554221111
Q ss_pred --CCCHHHH------HHHHHHHh--ccCcEEEEEccccc
Q 035887 236 --NRSLEEK------ASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 236 --~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
+...... .-.+.+++ +++.+|+++||+-.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 2221111 12344444 46899999999853
No 357
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.82 E-value=0.43 Score=53.05 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV 214 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 214 (886)
...+|+|+|.+|+||||++..+.... .. .-..+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l-~~--~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY-QR--KGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh--CCCeEEEEec
Confidence 45799999999999999999998776 22 1234555554
No 358
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.75 E-value=0.063 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 359
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.75 E-value=0.088 Score=50.53 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=27.3
Q ss_pred HHHHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 163 FDKVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+..+..++.. .....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444455543 123479999999999999999998876
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.73 E-value=0.058 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44799999999999999999998765
No 361
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.73 E-value=0.061 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 362
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.73 E-value=0.11 Score=56.14 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=57.1
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCC-CCCC-eEEEEEeCCC-CCHHHHHHHHHHHhCCCC------
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAP-NNFE-VVIWVVVSKD-MQLESVQEKIGERIGFLE------ 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~~------ 235 (886)
.++.+.. .+-.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+. ....++.+++.+.=....
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~a 219 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMN 219 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEE
Confidence 3444433 344567899999999999999998876 321 1111 5566666654 345566666544311110
Q ss_pred --CCCHHH------HHHHHHHHhc---cCcEEEEEcccc
Q 035887 236 --NRSLEE------KASGIFKILS---KKKFLLLLDDIW 263 (886)
Q Consensus 236 --~~~~~~------~~~~l~~~l~---~k~~LlVlDdv~ 263 (886)
+..... ..-.+.++++ ++.+|+++||+-
T Consensus 220 tsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 220 LANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 222211 1224556664 689999999984
No 363
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.72 E-value=0.064 Score=54.28 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998865
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.69 E-value=0.065 Score=49.69 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998865
No 365
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.69 E-value=0.06 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.67 E-value=0.064 Score=54.58 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 367
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.63 E-value=0.065 Score=55.98 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|+|+|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999998876
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.62 E-value=0.063 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.3
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.57 E-value=0.12 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.54 E-value=0.052 Score=53.55 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 371
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.54 E-value=0.099 Score=57.32 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=55.2
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHH-HHHHhhccCCCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCC------
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLT-QINNKFLDAPNNFE-VVIWVVVSKDM-QLESVQEKIGERIGFLE------ 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------ 235 (886)
.++.+.. .+-.-++|.|..|+|||+||. .+.+.. .-+ .++++-+.+.. ...++.+++.+.=....
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 4455543 455778999999999999965 666553 244 34677777654 45555555544211111
Q ss_pred --CCCHHH------HHHHHHHHh--ccCcEEEEEccccc
Q 035887 236 --NRSLEE------KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 236 --~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
+..... ..-.+.+++ +++.+|+++||+-.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 121111 111344444 46899999999853
No 372
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.53 E-value=0.066 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.48 E-value=0.066 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.46 E-value=0.12 Score=51.96 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998775
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.40 E-value=0.076 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999988754
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.35 E-value=0.056 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
++++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.35 E-value=0.069 Score=54.04 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 44699999999999999999999775
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.30 E-value=0.071 Score=52.43 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.27 E-value=0.072 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.24 E-value=0.079 Score=51.85 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 381
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.22 E-value=0.072 Score=52.48 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998875
No 382
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.21 E-value=0.55 Score=52.82 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=39.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.-.++.|.|.+|+||||+|.++..+.. ..+-..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 446889999999999999999988872 12234678887644 4667777665543
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.20 E-value=0.08 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.15 E-value=0.079 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|++|+||||+++.+..-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 385
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.14 E-value=2.3 Score=46.82 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIG 228 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (886)
.-.++.|.|.+|+||||+|..+..... . ..-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~-~-~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA-T-KTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH-H-HSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-H-hCCCcEEEEECCC--CHHHHHHHHH
Confidence 446899999999999999999988762 1 1223678876543 4556666554
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.11 E-value=0.077 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 387
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.11 E-value=0.048 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.804 Sum_probs=21.4
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 388
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.08 E-value=0.066 Score=51.34 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988876
No 389
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.07 E-value=0.084 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998876
No 390
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.94 E-value=0.13 Score=56.06 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=58.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC------
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNN--FEVVIWVVVSKDM-QLESVQEKIGERIGFLE------ 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------ 235 (886)
.++.+.. .+-.-++|.|..|+|||+|+.++.++. ...+. =+.++++-+.+.. ...++.+++.+.=....
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 4444443 345677899999999999999999887 32211 1356666666543 45566666654311111
Q ss_pred --CCCHHH------HHHHHHHHhc---cCcEEEEEcccc
Q 035887 236 --NRSLEE------KASGIFKILS---KKKFLLLLDDIW 263 (886)
Q Consensus 236 --~~~~~~------~~~~l~~~l~---~k~~LlVlDdv~ 263 (886)
+..... ..-.+.++++ ++.+|+++||+-
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 222111 1223555655 589999999984
No 391
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.93 E-value=0.3 Score=62.78 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++.|+|++|+||||||.++..... ..-..++|++....++... ++.++... ..+.+++.+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457999999999999999999988872 2234789998877776542 55665432 45667776666
Q ss_pred HHHhc-cCcEEEEEcccc
Q 035887 247 FKILS-KKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~-~k~~LlVlDdv~ 263 (886)
+...+ .+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 65553 456699999885
No 392
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.42 Score=54.63 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45699999999999999999998754
No 393
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.88 E-value=0.088 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|.|.|++|+||||.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.80 E-value=0.094 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 395
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.77 E-value=0.53 Score=51.91 Aligned_cols=54 Identities=11% Similarity=-0.042 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERI 231 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (886)
.-.++.|.|.+|+||||+|..++.... . ..-..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a-~-~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA-L-KEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H-TTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H-hCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 446899999999999999999988762 1 123467887654 45667777665443
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.76 E-value=0.08 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 397
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.74 E-value=0.13 Score=53.66 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
...++|+|+|-||+||||+|..+..... ..-..++-|......+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La---~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH---HCCCeEEEEeCCCCCC
Confidence 4678999999999999999999888772 2233677777664433
No 398
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.69 E-value=0.11 Score=56.16 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=56.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCC--------CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCC-
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAP--------NNFE-VVIWVVVSKDM-QLESVQEKIGERIGF- 233 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~- 233 (886)
.++.+.. .+-.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+.. ...++.+++.+. +.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~~ 214 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GAL 214 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-ccc
Confidence 3444433 345677899999999999999998876 321 1222 55666666543 455555554432 11
Q ss_pred CC--------CCC-HHH-----HHHHHHHHhc---cCcEEEEEcccc
Q 035887 234 LE--------NRS-LEE-----KASGIFKILS---KKKFLLLLDDIW 263 (886)
Q Consensus 234 ~~--------~~~-~~~-----~~~~l~~~l~---~k~~LlVlDdv~ 263 (886)
.. +.. ... ..-.+.++++ ++.+|+++||+-
T Consensus 215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 00 111 111 1224556664 689999999985
No 399
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.62 E-value=0.28 Score=62.21 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-+++.|+|++|+||||||.++..... ..-..++|++....++.. .++.++... ..+.++..+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 457999999999999999999988762 223578999888877654 255665432 44566666666
Q ss_pred HHHhc-cCcEEEEEcccc
Q 035887 247 FKILS-KKKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~-~k~~LlVlDdv~ 263 (886)
....+ .+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHhcCCCEEEECCHH
Confidence 65554 356699999885
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.57 E-value=0.1 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998865
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.54 E-value=0.34 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...|.|-|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.53 E-value=0.1 Score=51.09 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.53 E-value=0.1 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|+|.|+.|+||||||+.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 404
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.50 E-value=0.11 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 405
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.49 E-value=0.12 Score=59.54 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 155 TIVGLDSTFDKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|.+..++.+...+..+ ..+.|+|+.|+||||||+.+....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5799988888887777655 588999999999999999999876
No 406
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.47 E-value=0.31 Score=53.89 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=41.7
Q ss_pred HHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC-HHHHHHHH
Q 035887 165 KVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ-LESVQEKI 227 (886)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 227 (886)
++++.+.. .+-..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ ..++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 35555543 456789999999999999999987754 235788888877654 45555554
No 407
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.46 E-value=0.18 Score=55.45 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=56.6
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHH-HHHHHhhccC----CCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCC--
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLL-TQINNKFLDA----PNNFE-VVIWVVVSKDM-QLESVQEKIGERIGFLE-- 235 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-- 235 (886)
.++.+.. .+-.-++|.|..|+|||+|| ..+.+.. .. ..+-+ .++++-+.+.. ...++.+++.+.=....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 4455543 45577899999999999995 4666665 21 12234 46777777654 45555555554211111
Q ss_pred ------CCCHHH------HHHHHHHHh--ccCcEEEEEccccc
Q 035887 236 ------NRSLEE------KASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 236 ------~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
+..... ..-.+.+++ +++.+|+++||+-.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 121111 111344444 46899999999853
No 408
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.45 E-value=0.092 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINN 197 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~ 197 (886)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999884
No 409
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.44 E-value=0.21 Score=55.43 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=57.6
Q ss_pred HHHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHH----HhCCCC---
Q 035887 165 KVWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKIGE----RIGFLE--- 235 (886)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~----~l~~~~--- 235 (886)
++++.|.. .+-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+. ....++++++-+ ..+...
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~r 295 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMER 295 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGG
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccc
Confidence 35555554 456789999999999999999998865 2356777777765 344455544322 111110
Q ss_pred --------CCCHHHH------HHHHHHHh--ccCcEEEEEcccc
Q 035887 236 --------NRSLEEK------ASGIFKIL--SKKKFLLLLDDIW 263 (886)
Q Consensus 236 --------~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 263 (886)
+...... .-.+.+++ +++.+||++|++.
T Consensus 296 tvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 296 TVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 2222111 11234444 3689999999985
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.36 E-value=0.07 Score=53.16 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=16.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHH-Hhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQIN-NKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 199 (886)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.36 E-value=0.11 Score=51.59 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 412
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.36 E-value=0.1 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.. .+++|+|+.|.|||||++.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998764
No 413
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.35 E-value=0.27 Score=52.49 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=28.6
Q ss_pred HHHHHHHHh--cCCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 163 FDKVWRCLI--QEQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 163 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..++.+.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444 2567899999999999999999988776
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.33 E-value=0.11 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998876
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.28 E-value=0.088 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-.+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 416
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.20 E-value=0.093 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
-.+++|+|+.|.|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998765
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.19 E-value=0.11 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.17 E-value=0.33 Score=61.62 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLE-------NRSLEEKASGI 246 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 246 (886)
.-++|-|+|+.|+||||||.++.... ...-...+|+.+.+..+..- ++.++... ..+.++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45799999999999999999998776 34567789999888777664 67777654 45556666666
Q ss_pred HHHhcc-CcEEEEEcccc
Q 035887 247 FKILSK-KKFLLLLDDIW 263 (886)
Q Consensus 247 ~~~l~~-k~~LlVlDdv~ 263 (886)
...++. ..-++|+|-|-
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 666664 55688999873
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.16 E-value=0.12 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHHH
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINN 197 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~ 197 (886)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999965
No 420
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.15 E-value=0.12 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|+|+.|+|||||++.+..-.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998865
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.08 E-value=0.23 Score=49.06 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....|.|-|+.|+||||+++.+.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.05 E-value=0.12 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 423
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.05 E-value=0.12 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.676 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQIN 196 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~ 196 (886)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.02 E-value=0.12 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 425
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.96 E-value=0.095 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.96 E-value=0.22 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999988
No 427
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.95 E-value=0.11 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999987654
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.95 E-value=0.12 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.1
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 429
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.94 E-value=0.26 Score=51.06 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
.-.+++|+|++|+|||||++.+.... ... .-..++|+.... ....+...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~-~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTA-MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHH-cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 45699999999999999999998876 211 122566776432 34444444433
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.88 E-value=0.14 Score=52.83 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.86 E-value=0.12 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|.|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 432
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.79 E-value=0.13 Score=56.32 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCchhHHHHH-HHHHhhccCCCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------CCC----
Q 035887 174 QVGIIGLHGMGGVGKTTLLT-QINNKFLDAPNNFE-VVIWVVVSKDM-QLESVQEKIGERIGFLE--------NRS---- 238 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~---- 238 (886)
+-.-++|.|..|+|||+||. .+.+.. . -+ .++++-+.+.. ...++.+++.+.=.... +..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 45678999999999999965 666653 2 34 35667676654 34455555433211000 110
Q ss_pred --HHHHHHHHHHHh--ccCcEEEEEccccc
Q 035887 239 --LEEKASGIFKIL--SKKKFLLLLDDIWE 264 (886)
Q Consensus 239 --~~~~~~~l~~~l--~~k~~LlVlDdv~~ 264 (886)
.....-.+.+++ +++.+|+++||+-.
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111222233333 47999999999853
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.77 E-value=0.13 Score=49.46 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 434
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.66 E-value=0.16 Score=53.16 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEe
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVV 214 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 214 (886)
...+|+|+|++|+||||++..+.... . ..-..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l-~--~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY-A--ELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEeC
Confidence 45799999999999999999998876 2 22234555554
No 435
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.66 E-value=0.4 Score=46.80 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=33.5
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGE 229 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (886)
..|.|-|+.|+||||+++.+.... .. ..+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-EQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-HH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887 32 33433444433333234444444443
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.58 E-value=0.13 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998875
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.57 E-value=0.15 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 438
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.56 E-value=0.11 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 439
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.39 E-value=0.14 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.-.+++|+|+.|.|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999884
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.38 E-value=0.15 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998876
No 441
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.34 E-value=0.35 Score=50.89 Aligned_cols=49 Identities=27% Similarity=0.290 Sum_probs=36.0
Q ss_pred HhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHH
Q 035887 170 LIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLE 221 (886)
Q Consensus 170 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (886)
+.+...+++.+.|-||+||||+|..+.... ...-..++-|+.....+..
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l---a~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL---AKVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH---TTSSSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH---HhCCCcEEEEECCCCCChh
Confidence 444457888899999999999999998887 2344567788776544333
No 442
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.31 E-value=0.29 Score=51.86 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=34.8
Q ss_pred HhcCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCC
Q 035887 170 LIQEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQ 219 (886)
Q Consensus 170 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 219 (886)
+.....+++.+.|-||+||||+|..+.... .....-..++-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCC
Confidence 334567899999999999999999988877 2003345677777654433
No 443
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.27 E-value=0.12 Score=52.52 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999988654
No 444
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.26 E-value=0.13 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999987654
No 445
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.23 E-value=0.1 Score=53.99 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.22 E-value=0.16 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998764
No 447
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.19 E-value=0.12 Score=51.64 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 448
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.13 E-value=0.11 Score=50.98 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 449
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.11 E-value=0.15 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.-.+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999874
No 450
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.07 E-value=0.13 Score=51.11 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 451
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.07 E-value=0.16 Score=51.49 Aligned_cols=110 Identities=12% Similarity=0.176 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHH--HhCCCCCCCHHHHHHHHHHH
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK-DMQLESVQEKIGE--RIGFLENRSLEEKASGIFKI 249 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~l~~~ 249 (886)
..-.+++|+|+.|+||||+++.+..-. . ..+...+++.-.. .+-.... ..++. .++. +.......+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~-~--~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI-N--QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTKSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH-H--HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC-C--CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CHHHHHHHHHHH
Confidence 455799999999999999999988754 1 1112222222110 0000000 00000 0110 112234566777
Q ss_pred hccCcEEEEEccccchhhhhhccCCCCCCCCCCcEEEEEcCChhh
Q 035887 250 LSKKKFLLLLDDIWERVDLAKLGVPFPAISKNASKIVFTTRLENV 294 (886)
Q Consensus 250 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~gs~iiiTtR~~~v 294 (886)
+..++=+|++|+.-+.+....+... ...|.-|++||-...+
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~----~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRA----AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHH----HccCCEEEEEeCcchH
Confidence 7777888999998755443332111 1235668888876553
No 452
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.06 E-value=0.13 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999988654
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.04 E-value=0.13 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.03 E-value=0.16 Score=49.04 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.02 E-value=0.17 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.281 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..+|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998875
No 456
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.96 E-value=0.16 Score=52.59 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 355799999999999999999988754
No 457
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.93 E-value=0.14 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999988754
No 458
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.92 E-value=0.15 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999998754
No 459
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.89 E-value=0.14 Score=51.58 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987764
No 460
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.89 E-value=0.15 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchhHHHHHHHHHh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 461
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.85 E-value=0.3 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999998776
No 462
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.83 E-value=0.28 Score=47.96 Aligned_cols=37 Identities=30% Similarity=0.234 Sum_probs=26.3
Q ss_pred EEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCC
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSK 216 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 216 (886)
.|.+.|.||+||||+|..+..... . ..+ .+..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~-~G~-~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-R-QGV-RVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-H-TTC-CEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-H-CCC-CEEEEEeCC
Confidence 477899999999999999888762 1 223 355555544
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.80 E-value=0.14 Score=51.78 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999998754
No 464
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.65 E-value=0.14 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998754
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.60 E-value=0.15 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998754
No 466
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.54 E-value=0.31 Score=46.53 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998764
No 467
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.53 E-value=0.15 Score=51.27 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 468
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.50 E-value=0.3 Score=49.76 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=29.9
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD 217 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 217 (886)
++|+|.|-||+||||+|..+.... . ..-..++-|.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l-a--~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL-H--AMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH-H--TTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH-H--HCCCcEEEEcCCCC
Confidence 578889999999999999999887 2 22346777776543
No 469
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.46 E-value=0.13 Score=48.95 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhHHHHHHHHHh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.44 E-value=0.18 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHHHh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.43 E-value=0.18 Score=46.59 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.40 E-value=0.19 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEcCCCchhHHHHHHHHHhh
Q 035887 177 IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++|+|+.|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 473
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.39 E-value=0.15 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999988754
No 474
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.38 E-value=0.15 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.37 E-value=0.2 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-..|.|.|+.|+||||||..+..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678899999999999999998765
No 476
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.36 E-value=0.096 Score=60.11 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=32.4
Q ss_pred CccccchhhHHHHHHHHhcCCce-----------EEEEEcCCCchhHHHHHHHHHhh
Q 035887 154 PTIVGLDSTFDKVWRCLIQEQVG-----------IIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
+.++|.+..++.+.-.+..+..+ -|.++|++|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45677777665554444433211 47899999999999999988764
No 477
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.25 E-value=0.16 Score=52.06 Aligned_cols=26 Identities=38% Similarity=0.385 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 478
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=89.20 E-value=0.21 Score=55.16 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC-CCHHHHHHHH
Q 035887 166 VWRCLIQ-EQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD-MQLESVQEKI 227 (886)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i 227 (886)
+++.|.. .+-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+. ....++.+++
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS-----NADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHTTG
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4455543 456789999999999999999998765 2356777777665 3344444443
No 479
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.18 E-value=0.56 Score=50.93 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=47.2
Q ss_pred cCCceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc
Q 035887 172 QEQVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGERIGFLENRSLEEKASGIFKILS 251 (886)
Q Consensus 172 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 251 (886)
...-.+++|+|+.|.||||+++.+.... . ..-..++++.-.-.+....+ .+.... ....-.....++..+.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l-~--~~~g~I~~~ed~ie~~~~~~-----~q~~v~-~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL-N--SSERNILTVEDPIEFDIDGI-----GQTQVN-PRVDMTFARGLRAILR 234 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH-C--CTTSCEEEEESSCCSCCSSS-----EEEECB-GGGTBCHHHHHHHHGG
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc-C--CCCCEEEEecccchhccCCc-----ceEEEc-cccCcCHHHHHHHHhc
Confidence 3456799999999999999999998876 2 22223444432111110000 000000 0000122345667777
Q ss_pred cCcEEEEEccccchh
Q 035887 252 KKKFLLLLDDIWERV 266 (886)
Q Consensus 252 ~k~~LlVlDdv~~~~ 266 (886)
..+-++++.++.+..
T Consensus 235 q~pd~i~vgEiRd~e 249 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLE 249 (418)
T ss_dssp GCCSEEEESCCCSHH
T ss_pred cCCCeEEEcCcCCHH
Confidence 777788888876643
No 480
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.14 E-value=0.19 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.++.|+|++|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999988755
No 481
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.10 E-value=0.19 Score=46.59 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998764
No 482
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.09 E-value=0.88 Score=44.04 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
..|+|=|.-|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999988
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.06 E-value=0.2 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHHHh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.05 E-value=0.23 Score=49.58 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.93 E-value=0.51 Score=46.80 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEE
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVV 213 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 213 (886)
..+|.|.|+.|+||||+++.+.... . ...+..+..+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeeec
Confidence 4689999999999999999999887 3 23455344444
No 486
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.92 E-value=0.76 Score=50.50 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLESVQEKIGER 230 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (886)
.-.++.|.|.+|+||||+|.+++.+.. .. -..++|++.. .+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS-DN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH-HT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH-Hc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 446899999999999999999988872 22 3467777654 3444555555443
No 487
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.83 E-value=0.49 Score=47.39 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=31.4
Q ss_pred EEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCCCCHHH
Q 035887 178 IGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKDMQLES 222 (886)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (886)
|+|.|-||+||||+|..+.... . ..-..++-|......+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l-a--~~g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM-A--SDYDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH-T--TTCSCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH-H--HCCCeEEEEeCCCCcChHH
Confidence 6679999999999999999888 2 2335678887765544443
No 488
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.81 E-value=0.36 Score=45.83 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCceEEEEEcCCCchhHHHHHHHHHh
Q 035887 164 DKVWRCLIQEQVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
.++.+ +.....-.|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44555 33445667889999999999999999854
No 489
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.78 E-value=0.28 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
...+++|+|+.|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999883
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.77 E-value=0.21 Score=47.67 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-.|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998764
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.73 E-value=0.2 Score=54.69 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998765
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.66 E-value=0.22 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 173 EQVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
....+++|+|+.|.|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355799999999999999999999765
No 493
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.63 E-value=0.33 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.++.|+|+.|+||||++..+..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997776665
No 494
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.60 E-value=0.19 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 174 QVGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 55789999999999999999987654
No 495
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.58 E-value=0.24 Score=53.01 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
.+|+|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 496
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.47 E-value=0.23 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
--|+|+|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999998764
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.37 E-value=0.27 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999886
No 498
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.33 E-value=0.2 Score=46.86 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchhHHHHHHHHHhh
Q 035887 176 GIIGLHGMGGVGKTTLLTQINNKF 199 (886)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (886)
-.|+|+|.+|+|||||+..+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468899999999999999987654
No 499
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.31 E-value=0.35 Score=49.93 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHhhccCCCCCCeEEEEEeCCC
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNKFLDAPNNFEVVIWVVVSKD 217 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 217 (886)
.++|+|.|-||+||||+|..+..... ..-..++-|.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La---~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA---EMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH---HCCCeEEEEecCCC
Confidence 46888899999999999999988772 12335677776543
No 500
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.29 E-value=0.2 Score=50.77 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHh
Q 035887 175 VGIIGLHGMGGVGKTTLLTQINNK 198 (886)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~ 198 (886)
-.+++|+|+.|.|||||++.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998754
Done!