Query 035891
Match_columns 309
No_of_seqs 201 out of 2097
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 3.3E-17 7.2E-22 165.9 14.0 104 153-256 800-911 (1153)
2 PLN03210 Resistant to P. syrin 99.7 9.3E-17 2E-21 162.6 13.4 200 7-257 591-844 (1153)
3 PLN00113 leucine-rich repeat r 99.7 2.3E-16 5E-21 158.5 9.8 213 2-249 137-367 (968)
4 PLN00113 leucine-rich repeat r 99.6 1.6E-15 3.4E-20 152.5 12.3 222 2-257 115-351 (968)
5 KOG4658 Apoptotic ATPase [Sign 99.6 3.2E-16 6.9E-21 152.3 4.0 270 2-289 568-883 (889)
6 KOG4194 Membrane glycoprotein 99.6 4.2E-16 9.1E-21 139.6 1.3 206 3-249 195-427 (873)
7 KOG0444 Cytoskeletal regulator 99.5 4.9E-16 1.1E-20 140.4 -3.2 235 4-255 102-379 (1255)
8 KOG4194 Membrane glycoprotein 99.4 5.4E-14 1.2E-18 126.3 2.6 229 8-256 81-334 (873)
9 KOG0444 Cytoskeletal regulator 99.4 6.7E-15 1.4E-19 133.2 -4.4 233 3-261 30-290 (1255)
10 KOG0472 Leucine-rich repeat pr 99.3 3.6E-13 7.7E-18 116.2 0.1 217 2-250 249-540 (565)
11 KOG0472 Leucine-rich repeat pr 99.3 3.7E-15 8E-20 128.2 -12.0 223 2-261 65-297 (565)
12 PRK15370 E3 ubiquitin-protein 99.2 4.6E-11 1E-15 114.9 8.9 198 6-257 200-406 (754)
13 KOG0618 Serine/threonine phosp 99.2 2.2E-12 4.8E-17 121.5 -2.5 216 5-250 241-488 (1081)
14 PRK15370 E3 ubiquitin-protein 99.1 4.2E-11 9E-16 115.2 5.3 184 5-249 220-426 (754)
15 KOG4658 Apoptotic ATPase [Sign 99.1 3E-11 6.5E-16 118.0 3.7 221 5-253 545-785 (889)
16 PRK15387 E3 ubiquitin-protein 99.1 1.8E-10 4E-15 110.5 7.9 74 156-249 383-456 (788)
17 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 107.3 -0.7 208 3-245 119-333 (505)
18 PRK15387 E3 ubiquitin-protein 99.1 1.4E-09 2.9E-14 104.6 12.2 30 155-186 342-371 (788)
19 KOG2120 SCF ubiquitin ligase, 99.0 3.8E-12 8.2E-17 106.0 -6.2 179 31-248 186-373 (419)
20 KOG0617 Ras suppressor protein 99.0 2.8E-12 6.2E-17 98.6 -6.8 159 3-196 31-191 (264)
21 KOG0618 Serine/threonine phosp 99.0 2.4E-11 5.2E-16 114.6 -3.8 189 3-226 285-488 (1081)
22 KOG4237 Extracellular matrix p 98.9 5.4E-11 1.2E-15 102.6 -2.2 61 8-81 70-131 (498)
23 KOG0617 Ras suppressor protein 98.9 2.4E-11 5.2E-16 93.6 -5.5 165 19-233 24-191 (264)
24 cd00116 LRR_RI Leucine-rich re 98.9 3.5E-10 7.7E-15 99.4 0.1 213 3-248 21-260 (319)
25 cd00116 LRR_RI Leucine-rich re 98.8 6.4E-10 1.4E-14 97.8 -1.5 161 4-188 50-232 (319)
26 KOG4237 Extracellular matrix p 98.8 2.2E-10 4.8E-15 98.9 -4.5 226 1-247 87-355 (498)
27 KOG3207 Beta-tubulin folding c 98.6 3.5E-09 7.5E-14 92.7 -1.1 182 27-248 118-311 (505)
28 PF14580 LRR_9: Leucine-rich r 98.6 1.1E-08 2.3E-13 81.2 0.5 79 96-188 43-124 (175)
29 PF14580 LRR_9: Leucine-rich r 98.6 9.4E-09 2E-13 81.5 0.0 78 96-186 65-149 (175)
30 KOG1259 Nischarin, modulator o 98.5 1.1E-08 2.4E-13 85.8 -0.7 38 5-43 182-227 (490)
31 PF13855 LRR_8: Leucine rich r 98.5 8.2E-08 1.8E-12 62.6 2.0 59 5-76 1-59 (61)
32 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-09 2.8E-14 91.1 -8.3 177 6-225 186-374 (419)
33 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.1E-12 84.8 4.4 172 3-224 114-287 (394)
34 KOG1259 Nischarin, modulator o 98.3 5.2E-08 1.1E-12 81.8 -1.7 105 6-136 285-389 (490)
35 KOG4341 F-box protein containi 98.3 3.2E-08 6.9E-13 86.3 -4.4 38 4-41 189-227 (483)
36 COG4886 Leucine-rich repeat (L 98.3 5E-07 1.1E-11 82.0 3.0 151 6-191 141-291 (394)
37 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.7E-11 52.0 3.8 38 5-44 1-38 (44)
38 KOG0532 Leucine-rich repeat (L 98.2 5.4E-08 1.2E-12 88.1 -5.4 189 8-248 78-270 (722)
39 PF13855 LRR_8: Leucine rich r 98.1 7E-06 1.5E-10 53.3 5.2 58 96-165 2-59 (61)
40 PRK15386 type III secretion pr 98.1 6.4E-06 1.4E-10 73.5 6.3 68 96-186 53-121 (426)
41 PRK15386 type III secretion pr 98.0 1.1E-05 2.4E-10 72.0 6.9 62 61-134 47-108 (426)
42 KOG4341 F-box protein containi 98.0 6E-07 1.3E-11 78.6 -2.5 217 3-253 214-441 (483)
43 KOG0532 Leucine-rich repeat (L 97.8 2.1E-06 4.5E-11 78.1 -2.2 125 2-139 118-252 (722)
44 KOG1909 Ran GTPase-activating 97.8 3.5E-06 7.6E-11 72.2 -0.8 34 4-39 29-67 (382)
45 KOG1909 Ran GTPase-activating 97.8 2.9E-06 6.4E-11 72.7 -1.3 216 3-248 56-308 (382)
46 KOG0531 Protein phosphatase 1, 97.8 1.6E-06 3.4E-11 79.3 -3.3 99 6-129 73-171 (414)
47 KOG3665 ZYG-1-like serine/thre 97.7 3.7E-06 8E-11 80.8 -1.8 127 96-247 123-259 (699)
48 KOG3665 ZYG-1-like serine/thre 97.7 2E-05 4.3E-10 75.8 2.6 137 5-165 122-260 (699)
49 KOG0531 Protein phosphatase 1, 97.6 6.6E-06 1.4E-10 75.2 -1.7 103 2-129 92-195 (414)
50 PLN03150 hypothetical protein; 97.6 0.00013 2.7E-09 70.2 6.5 108 6-134 419-529 (623)
51 KOG2982 Uncharacterized conser 97.6 2.4E-05 5.1E-10 66.0 1.4 153 9-188 49-210 (418)
52 PLN03150 hypothetical protein; 97.5 0.00026 5.6E-09 68.1 6.9 111 31-170 419-531 (623)
53 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.7E-09 56.5 5.0 104 96-223 43-149 (233)
54 KOG1859 Leucine-rich repeat pr 97.4 5.2E-06 1.1E-10 77.7 -6.0 79 94-187 186-264 (1096)
55 PF12799 LRR_4: Leucine Rich r 97.3 0.00019 4.2E-09 43.0 2.6 41 30-83 1-41 (44)
56 KOG1644 U2-associated snRNP A' 97.3 0.00057 1.2E-08 54.7 5.6 13 153-165 138-150 (233)
57 KOG1947 Leucine rich repeat pr 97.2 1.2E-05 2.6E-10 74.7 -5.4 82 96-186 244-330 (482)
58 KOG1947 Leucine rich repeat pr 97.1 3.6E-05 7.9E-10 71.5 -3.9 117 4-135 187-310 (482)
59 KOG2739 Leucine-rich acidic nu 96.8 0.00039 8.4E-09 57.7 0.5 32 6-40 44-75 (260)
60 KOG1859 Leucine-rich repeat pr 96.7 2.4E-05 5.2E-10 73.4 -7.8 97 8-129 167-263 (1096)
61 KOG2982 Uncharacterized conser 96.6 0.00061 1.3E-08 57.7 0.2 60 4-77 70-132 (418)
62 PF00560 LRR_1: Leucine Rich R 96.4 0.0012 2.6E-08 33.0 0.5 22 6-29 1-22 (22)
63 KOG3864 Uncharacterized conser 96.0 0.00094 2E-08 53.5 -1.6 84 32-132 103-188 (221)
64 KOG4579 Leucine-rich repeat (L 95.6 0.0033 7.2E-08 47.4 0.1 61 6-80 54-114 (177)
65 KOG2123 Uncharacterized conser 95.4 0.00067 1.4E-08 57.0 -4.6 102 4-126 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 95.2 0.01 2.2E-07 49.5 1.5 111 117-253 40-158 (260)
67 KOG2123 Uncharacterized conser 95.1 0.00091 2E-08 56.2 -4.6 82 119-225 18-99 (388)
68 PF13504 LRR_7: Leucine rich r 95.1 0.014 3.1E-07 27.1 1.3 16 6-22 2-17 (17)
69 PF13306 LRR_5: Leucine rich r 95.1 0.19 4.1E-06 37.4 8.3 75 96-185 13-89 (129)
70 KOG3864 Uncharacterized conser 95.0 0.0011 2.5E-08 53.0 -4.1 66 153-230 123-192 (221)
71 smart00370 LRR Leucine-rich re 94.9 0.028 6.1E-07 29.2 2.3 22 4-26 1-22 (26)
72 smart00369 LRR_TYP Leucine-ric 94.9 0.028 6.1E-07 29.2 2.3 22 4-26 1-22 (26)
73 COG5238 RNA1 Ran GTPase-activa 94.7 0.011 2.3E-07 49.8 0.6 169 5-188 30-225 (388)
74 PF13306 LRR_5: Leucine rich r 94.4 0.37 8.1E-06 35.8 8.5 111 114-255 6-118 (129)
75 KOG4579 Leucine-rich repeat (L 92.0 0.0094 2E-07 45.0 -3.6 13 153-165 98-110 (177)
76 COG5238 RNA1 Ran GTPase-activa 92.0 0.14 3.1E-06 43.3 2.9 147 26-188 88-253 (388)
77 smart00367 LRR_CC Leucine-rich 89.0 0.26 5.7E-06 25.5 1.3 17 237-253 1-17 (26)
78 PF13516 LRR_6: Leucine Rich r 82.0 0.44 9.4E-06 24.0 0.0 13 30-42 2-14 (24)
79 smart00365 LRR_SD22 Leucine-ri 76.9 2.2 4.7E-05 22.2 1.7 15 5-20 2-16 (26)
80 smart00364 LRR_BAC Leucine-ric 76.3 1.9 4E-05 22.4 1.3 18 5-23 2-19 (26)
81 smart00368 LRR_RI Leucine rich 61.9 7 0.00015 20.4 1.7 10 6-15 3-12 (28)
82 KOG3763 mRNA export factor TAP 41.3 11 0.00023 35.5 0.5 81 153-244 216-307 (585)
83 KOG0473 Leucine-rich repeat pr 37.0 0.84 1.8E-05 37.9 -6.4 36 5-42 42-77 (326)
84 TIGR00864 PCC polycystin catio 29.5 42 0.00091 38.1 2.7 31 11-42 1-31 (2740)
85 smart00446 LRRcap occurring C- 24.8 31 0.00068 17.9 0.4 14 25-38 8-21 (26)
86 KOG3763 mRNA export factor TAP 23.6 52 0.0011 31.1 1.9 84 28-126 216-307 (585)
87 KOG0473 Leucine-rich repeat pr 20.4 11 0.00024 31.5 -2.7 59 4-77 64-122 (326)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=3.3e-17 Score=165.86 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=71.9
Q ss_pred cccCcceEEEeCc-eecccCccCCCCCccEEEEEcCccccccccccccCC------cCcc-cccCCccCCccceeecccc
Q 035891 153 GFFSLHKVSIWGS-KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGE------VPSE-EMQNLFPFARLESLSLYAL 224 (309)
Q Consensus 153 ~~~~L~~L~l~~c-~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~------~~~~-~~~~~~~~~~L~~L~L~~~ 224 (309)
.+++|+.|++++| +++.+|....+++|+.|++++|..+..++....+.. .... -+..+..+++|+.|++.+|
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence 5677777777777 777776555677788888887776665543211100 0000 0124567888999999999
Q ss_pred ccccccCCCccCCCCccEEeecCcccCCCCCC
Q 035891 225 GNLRSIYPKALPFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 225 ~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 256 (309)
++++.++.....+++|+.+++.+|++|+.++.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCcccccccC
Confidence 99998888777888999999999998886553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=9.3e-17 Score=162.61 Aligned_cols=200 Identities=22% Similarity=0.315 Sum_probs=119.6
Q ss_pred CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891 7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT 86 (309)
Q Consensus 7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~ 86 (309)
||+|.+.++ .++.+|.. + .+.+|++|++.++.+ ..++.++..+++|+.++++.+. .+..++.
T Consensus 591 Lr~L~~~~~-~l~~lP~~-f-~~~~L~~L~L~~s~l-------------~~L~~~~~~l~~Lk~L~Ls~~~--~l~~ip~ 652 (1153)
T PLN03210 591 LRLLRWDKY-PLRCMPSN-F-RPENLVKLQMQGSKL-------------EKLWDGVHSLTGLRNIDLRGSK--NLKEIPD 652 (1153)
T ss_pred cEEEEecCC-CCCCCCCc-C-CccCCcEEECcCccc-------------cccccccccCCCCCEEECCCCC--CcCcCCc
Confidence 444444444 44444443 2 344555555555444 3456667778888888886432 2222222
Q ss_pred CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-
Q 035891 87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS- 165 (309)
Q Consensus 87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c- 165 (309)
... +++|+.|++.+|..+..+| ..+..+++|+.|++++|+.++.++... .+++|+.|++++|
T Consensus 653 ls~----l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i------------~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 653 LSM----ATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGI------------NLKSLYRLNLSGCS 715 (1153)
T ss_pred ccc----CCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCcC------------CCCCCCEEeCCCCC
Confidence 222 4478888888888877776 457778888888888888777776533 3455555555555
Q ss_pred eecccCccCCCCCccEEEEEc-----------------------------------------------------Cccccc
Q 035891 166 KLRHVTWLILAPNLKHIEVYN-----------------------------------------------------CRYLDE 192 (309)
Q Consensus 166 ~l~~l~~l~~l~~L~~L~l~~-----------------------------------------------------c~~l~~ 192 (309)
.++.+|. ..++|++|++.+ |..+.+
T Consensus 716 ~L~~~p~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 716 RLKSFPD--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred Ccccccc--ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence 4443331 123333333333 322222
Q ss_pred cccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCC
Q 035891 193 IISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFD 257 (309)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 257 (309)
++ ..++.+++|+.|++.+|+.++.+|... .+++|+.|++++|.+++.+|..
T Consensus 794 lP-------------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 794 LP-------------SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred cC-------------hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 22 345677888888888888888877654 6788888888888888776653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=2.3e-16 Score=158.47 Aligned_cols=213 Identities=16% Similarity=0.185 Sum_probs=103.4
Q ss_pred CCCCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-
Q 035891 2 KYLVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA- 79 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~- 79 (309)
+.+.+|++|++++| .+. .+|.. ++++++|++|++++|.+. ...+..+.++++|++|++..+...
T Consensus 137 ~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~------------~~~p~~~~~l~~L~~L~L~~n~l~~ 202 (968)
T PLN00113 137 GSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLV------------GKIPNSLTNLTSLEFLTLASNQLVG 202 (968)
T ss_pred cccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCccc------------ccCChhhhhCcCCCeeeccCCCCcC
Confidence 35778888888888 655 57776 888888888888888775 344555556666666666544322
Q ss_pred hhhh-hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCc------------c-c
Q 035891 80 ALHR-LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGE------------E-V 145 (309)
Q Consensus 80 ~l~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~------------~-~ 145 (309)
.++. +.. +++|+.|+++++.....++ ..+..+++|+.|+++++.....++..+... . .
T Consensus 203 ~~p~~l~~-------l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 203 QIPRELGQ-------MKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCChHHcC-------cCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 1111 111 2245555555543322232 234444555555555432111222111100 0 0
Q ss_pred ccCCCcccccCcceEEEeCceec-ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccc
Q 035891 146 KRIRETHGFFSLHKVSIWGSKLR-HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYA 223 (309)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~c~l~-~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 223 (309)
..+.....+++|+.|++++|++. .+| ++..+++|++|++++|.....++ ..+..+++|+.|++.+
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------------~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-------------VALTSLPRLQVLQLWS 341 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-------------hhHhcCCCCCEEECcC
Confidence 00000003445555555555222 222 23444555555554443222222 2345566666666666
Q ss_pred cccccccCCCccCCCCccEEeecCcc
Q 035891 224 LGNLRSIYPKALPFPHLKELEVNLCP 249 (309)
Q Consensus 224 ~~~L~~l~~~~~~~~~L~~L~i~~C~ 249 (309)
+.-...++.....+++|+.|++++|.
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCCCe
Confidence 53333444444455666666666653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=1.6e-15 Score=152.51 Aligned_cols=222 Identities=18% Similarity=0.171 Sum_probs=142.9
Q ss_pred CCCCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-
Q 035891 2 KYLVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA- 79 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~- 79 (309)
.++.+||+|++++| .+. .+|. +.+++|++|++++|.+. ...+..++.+++|+.|+++.+...
T Consensus 115 ~~l~~L~~L~Ls~n-~l~~~~p~---~~l~~L~~L~Ls~n~~~------------~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 115 TTSSSLRYLNLSNN-NFTGSIPR---GSIPNLETLDLSNNMLS------------GEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred ccCCCCCEEECcCC-ccccccCc---cccCCCCEEECcCCccc------------ccCChHHhcCCCCCEEECccCcccc
Confidence 37889999999999 665 5664 57999999999999986 567788999999999999876543
Q ss_pred hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcce
Q 035891 80 ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHK 159 (309)
Q Consensus 80 ~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~ 159 (309)
.++.... . +++|+.|++++|.....++ ..+..+++|+.|+++++.-...++..+. .+++|++
T Consensus 179 ~~p~~~~--~----l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----------~l~~L~~ 240 (968)
T PLN00113 179 KIPNSLT--N----LTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIG-----------GLTSLNH 240 (968)
T ss_pred cCChhhh--h----CcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCChhHh-----------cCCCCCE
Confidence 2332211 2 4479999999977655555 5678899999999998643334443332 5677777
Q ss_pred EEEeCceec-ccC-ccCCCCCccEEEEEcCccccccccccccC-----------CcCcccccCCccCCccceeecccccc
Q 035891 160 VSIWGSKLR-HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLG-----------EVPSEEMQNLFPFARLESLSLYALGN 226 (309)
Q Consensus 160 L~l~~c~l~-~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~L~~L~L~~~~~ 226 (309)
|++++|++. .+| .++.+++|++|++++|.....++...... .....-...+..+++|+.|++.++..
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 777777333 233 45566777777776664332222100000 00000002345667777777777543
Q ss_pred ccccCCCccCCCCccEEeecCcccCCCCCCC
Q 035891 227 LRSIYPKALPFPHLKELEVNLCPKLEKLPFD 257 (309)
Q Consensus 227 L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 257 (309)
...++.....+++|+.|++++|.--..+|..
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 3344444557788888888877544445543
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.61 E-value=3.2e-16 Score=152.32 Aligned_cols=270 Identities=31% Similarity=0.428 Sum_probs=179.2
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------cccC--CcccchhhhhccCCCce
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILFG--GSLVLVEELLGLERLNV 70 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~--~~~~~~~~l~~L~~L~~ 70 (309)
..+++||+||+++|..+..+|.+ |+.|.+||+|+++++.+..+|.++ ++.. .....+.....|.+|++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 45889999999988788889998 999999999999999998777753 1111 11122333444777777
Q ss_pred EEEEEecch----hhhhhcCCcCccccCCCcCeEEEecCCC-------------------------CCeecccCcccccc
Q 035891 71 LTITLQSFA----ALHRLLTSPSLQSIFSNTPSLCLRNCHS-------------------------LSSLSVFTLASLRH 121 (309)
Q Consensus 71 L~l~~~~~~----~l~~~~~~~~l~~~l~~L~~L~l~~~~~-------------------------l~~~~~~~l~~l~~ 121 (309)
|.+...... .+.++.. +.+|+.+.+..+.. .... ...+..+.+
T Consensus 647 L~l~~s~~~~~~~~l~el~~-------Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~-~~~~~~l~~ 718 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELEN-------LEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTL-ISSLGSLGN 718 (889)
T ss_pred EEeeccccccchhhHHhhhc-------ccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccccee-ecccccccC
Confidence 777644311 1222211 11333333332211 1111 135677889
Q ss_pred CCEEEEecCCCCceEEcCccCcccccCCCccc-ccCcceEEEeCc-eecccCccCCCCCccEEEEEcCcccccccccccc
Q 035891 122 LEALDMTNCKDLEEMEIDYAGEEVKRIRETHG-FFSLHKVSIWGS-KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKL 199 (309)
Q Consensus 122 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~c-~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 199 (309)
|+.|.+.+|...+.... +.... ... . |+++..+.+.+| .++.+.|....|+|+.|.+..|..++++++....
T Consensus 719 L~~L~i~~~~~~e~~~~-~~~~~----~~~-~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIE-WEESL----IVL-LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred cceEEEEcCCCchhhcc-ccccc----chh-hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHH
Confidence 99999999866543221 11000 000 2 778999999999 8888878889999999999999999999876553
Q ss_pred CCcCcccccCCccCCcccee-eccccccccccCCCccCCCCccEEeecCcccCCCCCCCCCCCC-C--cceEEEcchhcc
Q 035891 200 GEVPSEEMQNLFPFARLESL-SLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQ-E--RKLIIKGQEKWW 275 (309)
Q Consensus 200 ~~~~~~~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~-~--~l~~~~~~~~~~ 275 (309)
...... ....|.++..+ .+.+.+.++++......++.|+.+.+..||+++.+|....... . .......+.+|.
T Consensus 793 ~~~l~~---~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~ 869 (889)
T KOG4658|consen 793 LLELKE---LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWL 869 (889)
T ss_pred hhhccc---EEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccce
Confidence 221111 12345555555 4666666777777677888899999999999999998765543 2 334445677888
Q ss_pred ccceecCccccccc
Q 035891 276 NNLQWEDQATQNAF 289 (309)
Q Consensus 276 ~~l~~~~~~~~~~~ 289 (309)
+.++|.+++...+|
T Consensus 870 ~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 870 EGVYWEDELTKLRF 883 (889)
T ss_pred eeEEehhhhhhhhc
Confidence 89999999988887
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=4.2e-16 Score=139.61 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=105.8
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
.|.+|-.|.|+.| .++.+|..+|++|++|+.|++..|.+. ....-.++.|++|+.|.+..++...+.
T Consensus 195 ~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir------------ive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 195 SLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR------------IVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred ccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee------------eehhhhhcCchhhhhhhhhhcCccccc
Confidence 3444555555555 555555444444555555555555543 111233455555555555555444433
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.-.- .+ +.++++|++.. ++++.+....+-++..|+.|+++. +.++.+..+... ..++|+.|++
T Consensus 262 DG~F----y~-l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~Ws----------ftqkL~~LdL 324 (873)
T KOG4194|consen 262 DGAF----YG-LEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWS----------FTQKLKELDL 324 (873)
T ss_pred Ccce----ee-ecccceeeccc-chhhhhhcccccccchhhhhccch-hhhheeecchhh----------hcccceeEec
Confidence 2111 00 23455555555 334444433444555555555555 455555443322 4555666666
Q ss_pred eCceecccC--------------------------ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCcc
Q 035891 163 WGSKLRHVT--------------------------WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARL 216 (309)
Q Consensus 163 ~~c~l~~l~--------------------------~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 216 (309)
+.|+++.++ .+..+.+|+.|++..+. +...+ ++ .-..+.++++|
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~I--------ED-aa~~f~gl~~L 394 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCI--------ED-AAVAFNGLPSL 394 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEE--------ec-chhhhccchhh
Confidence 555444443 12233444444444331 11111 00 00345668888
Q ss_pred ceeeccccccccccCCCcc-CCCCccEEeecCcc
Q 035891 217 ESLSLYALGNLRSIYPKAL-PFPHLKELEVNLCP 249 (309)
Q Consensus 217 ~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~C~ 249 (309)
+.|.+.+ +++++++..++ .++.||.|++.+.+
T Consensus 395 rkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 395 RKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 8888888 58888888666 78888888888753
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=4.9e-16 Score=140.38 Aligned_cols=235 Identities=18% Similarity=0.187 Sum_probs=133.6
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc--c--------cc-CCcccchhhhhccCCCceEE
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS--I--------LF-GGSLVLVEELLGLERLNVLT 72 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~--~--------l~-~~~~~~~~~l~~L~~L~~L~ 72 (309)
|.-|..|||+.| +++..|.+ +..-+++-+|++++|.+..+|-.+ + +. ..-+.+|..+..|.+|++|.
T Consensus 102 l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchh-hhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 444555555555 55555555 555555555555555555444321 1 11 11245666666677777776
Q ss_pred EEEecchhh--hhhcCCcCc---cc---------------cCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCC
Q 035891 73 ITLQSFAAL--HRLLTSPSL---QS---------------IFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKD 132 (309)
Q Consensus 73 l~~~~~~~l--~~~~~~~~l---~~---------------~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 132 (309)
++++....+ ..++....+ .. .+.||..++++. +++..+| ..+-++++|+.|++++ +.
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecly~l~~LrrLNLS~-N~ 256 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECLYKLRNLRRLNLSG-NK 256 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcch-HHHhhhhhhheeccCc-Cc
Confidence 665544321 111111100 00 144566666655 4555555 3455677888888888 67
Q ss_pred CceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCCccEEEEEcCccccc-ccccccc-C-------Cc
Q 035891 133 LEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDE-IISLEKL-G-------EV 202 (309)
Q Consensus 133 l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~-~~~~~~~-~-------~~ 202 (309)
++++..... ...+|++|+++.|+++.+| .+..++.|+.|.+.++..--+ ++..-+. . +.
T Consensus 257 iteL~~~~~-----------~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 257 ITELNMTEG-----------EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred eeeeeccHH-----------HHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 777765443 4556666666666666555 345566666666654432211 1111000 0 00
Q ss_pred Cc--ccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCC
Q 035891 203 PS--EEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLP 255 (309)
Q Consensus 203 ~~--~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp 255 (309)
.. ..++++..+++|+.|.|.. +.|..+|.++.-++.|+.|+++..|+|..-|
T Consensus 326 N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 326 NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 00 0115788899999999986 6888999999999999999999999997543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.42 E-value=5.4e-14 Score=126.31 Aligned_cols=229 Identities=20% Similarity=0.223 Sum_probs=113.7
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------cccCC--cccchhhhhccCCCceEEEEEe
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILFGG--SLVLVEELLGLERLNVLTITLQ 76 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~~--~~~~~~~l~~L~~L~~L~l~~~ 76 (309)
+.|++++| .+..+....|.++++||.+++..|..+.+|... .+... ....-+++.-++.|++|+++.+
T Consensus 81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 56888888 788776555788888888888888886444321 01100 1222334555555555555544
Q ss_pred cchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccC
Q 035891 77 SFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFS 156 (309)
Q Consensus 77 ~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 156 (309)
....++.-.... -.++++|++++ +.++.+...++..+.+|..|.++. +.+..++...+. .++.
T Consensus 160 ~is~i~~~sfp~-----~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk----------~L~~ 222 (873)
T KOG4194|consen 160 LISEIPKPSFPA-----KVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFK----------RLPK 222 (873)
T ss_pred hhhcccCCCCCC-----CCCceEEeecc-ccccccccccccccchheeeeccc-CcccccCHHHhh----------hcch
Confidence 443332211100 11466666665 344555444555555666666665 556666555443 4666
Q ss_pred cceEEEeCceeccc--CccCCCCCccEEEEEcCc--cccccc--cccccCCcC--cc-----cccCCccCCccceeeccc
Q 035891 157 LHKVSIWGSKLRHV--TWLILAPNLKHIEVYNCR--YLDEII--SLEKLGEVP--SE-----EMQNLFPFARLESLSLYA 223 (309)
Q Consensus 157 L~~L~l~~c~l~~l--~~l~~l~~L~~L~l~~c~--~l~~~~--~~~~~~~~~--~~-----~~~~~~~~~~L~~L~L~~ 223 (309)
|+.|++..|.++.+ ..+..+++|+.|.+..+. .+++.. +-++..... .. ....+.++++|+.|++++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 66666666633322 134556666666554331 111100 000000000 00 002334556666666665
Q ss_pred cccccccCCCcc-CCCCccEEeecCcccCCCCCC
Q 035891 224 LGNLRSIYPKAL-PFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 224 ~~~L~~l~~~~~-~~~~L~~L~i~~C~~L~~lp~ 256 (309)
+.+..+....- .+++|+.|+++. .++++++.
T Consensus 303 -NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~ 334 (873)
T KOG4194|consen 303 -NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDE 334 (873)
T ss_pred -hhhheeecchhhhcccceeEeccc-cccccCCh
Confidence 34544443222 456666666665 35555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.40 E-value=6.7e-15 Score=133.16 Aligned_cols=233 Identities=17% Similarity=0.221 Sum_probs=135.1
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------ccc---CCcccchhhhhccCCCce
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILF---GGSLVLVEELLGLERLNV 70 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~---~~~~~~~~~l~~L~~L~~ 70 (309)
.++.++.|.|..+ ++..+|++ ++.|.+|++|.+.+|+...+-.+. .+. -++..+|.++-.|..|..
T Consensus 30 qMt~~~WLkLnrt-~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRT-KLEQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred HhhheeEEEechh-hhhhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 3567888999998 89999998 899999999999998875432221 011 123456666777777777
Q ss_pred EEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCC
Q 035891 71 LTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRE 150 (309)
Q Consensus 71 L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (309)
|+++.+....+++-....+ ++-.|++++ ++++.+|.+-+.++..|-.|+++. +.++.+|....
T Consensus 108 lDLShNqL~EvP~~LE~AK------n~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~R--------- 170 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAK------NSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIR--------- 170 (1255)
T ss_pred eecchhhhhhcchhhhhhc------CcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHH---------
Confidence 7776555444443322222 566677777 556777655566777777777776 67777776655
Q ss_pred cccccCcceEEEeCc-----eecccCccCCCCCccEEEEEcCccccccccccccC--------CcCcc---cccCCccCC
Q 035891 151 THGFFSLHKVSIWGS-----KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLG--------EVPSE---EMQNLFPFA 214 (309)
Q Consensus 151 ~~~~~~L~~L~l~~c-----~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~--------~~~~~---~~~~~~~~~ 214 (309)
.+.+|++|.+++| +++.+| .+++|++|.+++.....+-++..-++ .+.+. .+..+..++
T Consensus 171 --RL~~LqtL~Ls~NPL~hfQLrQLP---smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 171 --RLSMLQTLKLSNNPLNHFQLRQLP---SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR 245 (1255)
T ss_pred --HHhhhhhhhcCCChhhHHHHhcCc---cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence 5677777777777 333332 34455556665544332222211000 00000 002334455
Q ss_pred ccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCCCCCC
Q 035891 215 RLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSG 261 (309)
Q Consensus 215 ~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~ 261 (309)
+|+.|.|++ ++++.+........+||+|.++. .+|..||...-.+
T Consensus 246 ~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL 290 (1255)
T KOG0444|consen 246 NLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKL 290 (1255)
T ss_pred hhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhh
Confidence 555566655 35555555555555566666555 3555555544433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=3.6e-13 Score=116.15 Aligned_cols=217 Identities=18% Similarity=0.242 Sum_probs=119.0
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc-cc--------------------cCC------
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS-IL--------------------FGG------ 54 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-~l--------------------~~~------ 54 (309)
+.|.+|.+||+++| ++++.|.+ +..|++|.+||+++|.++.+|... ++ ..+
T Consensus 249 ~~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred cccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 47889999999999 99999999 899999999999999998766531 00 000
Q ss_pred ------------------------cccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecC-----
Q 035891 55 ------------------------SLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNC----- 105 (309)
Q Consensus 55 ------------------------~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~----- 105 (309)
....+.+...+.+.+.|+++....+.++.-.....-.. -....++++.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~---~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSE---IVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhc---ceEEEecccchHhhh
Confidence 01111222233444444443333332221110000000 0112222221
Q ss_pred ------------------CCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891 106 ------------------HSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL 167 (309)
Q Consensus 106 ------------------~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l 167 (309)
+....++ ..++.+++|..|+++. +-+.++|.++. .+..|+.|+|+.|.+
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~-~~l~~l~kLt~L~L~N-N~Ln~LP~e~~-----------~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVP-LELSQLQKLTFLDLSN-NLLNDLPEEMG-----------SLVRLQTLNLSFNRF 470 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccch-HHHHhhhcceeeeccc-chhhhcchhhh-----------hhhhhheeccccccc
Confidence 1111111 2233444555555554 44555554444 344455555555544
Q ss_pred cccCccCC-CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeec
Q 035891 168 RHVTWLIL-APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVN 246 (309)
Q Consensus 168 ~~l~~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~ 246 (309)
+.+|...+ +..+|.+-. ...++..+.. .++..+.+|..|++.+ +.+..+|...+.|.+|++|++.
T Consensus 471 r~lP~~~y~lq~lEtlla-s~nqi~~vd~------------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 471 RMLPECLYELQTLETLLA-SNNQIGSVDP------------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred ccchHHHhhHHHHHHHHh-ccccccccCh------------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEec
Confidence 44442222 222222222 2224444432 3578899999999998 5899999999999999999999
Q ss_pred Cccc
Q 035891 247 LCPK 250 (309)
Q Consensus 247 ~C~~ 250 (309)
+.|-
T Consensus 537 gNpf 540 (565)
T KOG0472|consen 537 GNPF 540 (565)
T ss_pred CCcc
Confidence 9753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=3.7e-15 Score=128.22 Aligned_cols=223 Identities=20% Similarity=0.250 Sum_probs=145.0
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----c---c--c-CCcccchhhhhccCCCceE
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----I---L--F-GGSLVLVEELLGLERLNVL 71 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----~---l--~-~~~~~~~~~l~~L~~L~~L 71 (309)
.+|..|.+|++.++ ++..+|+. |+++..++.|+.+.+++..+|.++ . + . ..-...+.+++.+..|+.+
T Consensus 65 ~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 65 KNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 46778889999999 88888887 899999999999999885433321 0 0 0 0112233334444444444
Q ss_pred EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891 72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRET 151 (309)
Q Consensus 72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (309)
+...+....+++-... +..+..+.+.+ +.+...+...+ +|+.|+.|+... +.++.+|.+..
T Consensus 143 ~~~~N~i~slp~~~~~------~~~l~~l~~~~-n~l~~l~~~~i-~m~~L~~ld~~~-N~L~tlP~~lg---------- 203 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVN------LSKLSKLDLEG-NKLKALPENHI-AMKRLKHLDCNS-NLLETLPPELG---------- 203 (565)
T ss_pred hccccccccCchHHHH------HHHHHHhhccc-cchhhCCHHHH-HHHHHHhcccch-hhhhcCChhhc----------
Confidence 4433333333221110 11344455554 33344432222 366777776665 56777776554
Q ss_pred ccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891 152 HGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY 231 (309)
Q Consensus 152 ~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 231 (309)
.+.+|..|++..+++..+|.+..+..|+++++..+ +++.++. +....++++..|++++ ++++++|
T Consensus 204 -~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpa------------e~~~~L~~l~vLDLRd-Nklke~P 268 (565)
T KOG0472|consen 204 -GLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPA------------EHLKHLNSLLVLDLRD-NKLKEVP 268 (565)
T ss_pred -chhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHH------------HHhcccccceeeeccc-cccccCc
Confidence 67888888888887777877777788888888553 5666653 3456889999999999 5899999
Q ss_pred CCccCCCCccEEeecCcccCCCCCCCCCCC
Q 035891 232 PKALPFPHLKELEVNLCPKLEKLPFDCTSG 261 (309)
Q Consensus 232 ~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~ 261 (309)
.+..-+.+|++|++++ ..+..+|.....+
T Consensus 269 de~clLrsL~rLDlSN-N~is~Lp~sLgnl 297 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSN-NDISSLPYSLGNL 297 (565)
T ss_pred hHHHHhhhhhhhcccC-CccccCCcccccc
Confidence 9999999999999998 4788888765544
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=4.6e-11 Score=114.93 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=105.3
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
+|+.|++++| .++.+|.. +. .+|++|++++|.+.. ++..+. .+|+.|+++.+....++...
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~-l~--~nL~~L~Ls~N~Lts-------------LP~~l~--~~L~~L~Ls~N~L~~LP~~l 260 (754)
T PRK15370 200 QITTLILDNN-ELKSLPEN-LQ--GNIKTLYANSNQLTS-------------IPATLP--DTIQEMELSINRITELPERL 260 (754)
T ss_pred CCcEEEecCC-CCCcCChh-hc--cCCCEEECCCCcccc-------------CChhhh--ccccEEECcCCccCcCChhH
Confidence 5677777777 77777765 32 467777777776642 222222 35666666655544443211
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc---------cccCCCcccccC
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE---------VKRIRETHGFFS 156 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~---------~~~~~~~~~~~~ 156 (309)
.. +|+.|++++ +.+..+|. .+. ++|+.|++++ ++++.++......+ -..++.. .+++
T Consensus 261 -----~s---~L~~L~Ls~-N~L~~LP~-~l~--~sL~~L~Ls~-N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~-l~~s 326 (754)
T PRK15370 261 -----PS---ALQSLDLFH-NKISCLPE-NLP--EELRYLSVYD-NSIRTLPAHLPSGITHLNVQSNSLTALPET-LPPG 326 (754)
T ss_pred -----hC---CCCEEECcC-CccCcccc-ccC--CCCcEEECCC-CccccCcccchhhHHHHHhcCCccccCCcc-cccc
Confidence 11 467777764 34555542 222 3677777776 35555442211000 0001111 3456
Q ss_pred cceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccC
Q 035891 157 LHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALP 236 (309)
Q Consensus 157 L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~ 236 (309)
|+.|++++|++..+|. ...++|+.|++++|. +..++ .. ..++|++|++++| .++.+|....
T Consensus 327 L~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP-------------~~--lp~~L~~LdLs~N-~Lt~LP~~l~- 387 (754)
T PRK15370 327 LKTLEAGENALTSLPA-SLPPELQVLDVSKNQ-ITVLP-------------ET--LPPTITTLDVSRN-ALTNLPENLP- 387 (754)
T ss_pred ceeccccCCccccCCh-hhcCcccEEECCCCC-CCcCC-------------hh--hcCCcCEEECCCC-cCCCCCHhHH-
Confidence 6666666665555551 223566777776653 33332 11 1357777777775 5666664322
Q ss_pred CCCccEEeecCcccCCCCCCC
Q 035891 237 FPHLKELEVNLCPKLEKLPFD 257 (309)
Q Consensus 237 ~~~L~~L~i~~C~~L~~lp~~ 257 (309)
++|+.|++++| ++..+|..
T Consensus 388 -~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 388 -AALQIMQASRN-NLVRLPES 406 (754)
T ss_pred -HHHHHHhhccC-CcccCchh
Confidence 35777777775 56666654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=2.2e-12 Score=121.50 Aligned_cols=216 Identities=20% Similarity=0.238 Sum_probs=113.2
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----ccc------CCcccchhhhhccCCCceEEEE
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----ILF------GGSLVLVEELLGLERLNVLTIT 74 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----~l~------~~~~~~~~~l~~L~~L~~L~l~ 74 (309)
.+|++++++.+ ++..+|. +++.+.+|+.+++.+|.++.+|.++ ++. .+-+.++..+++++.|++|++.
T Consensus 241 ~nl~~~dis~n-~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchh-hhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 57899999999 9999995 6999999999999999997655542 111 1123455566667777777777
Q ss_pred EecchhhhhhcCC-cC------------ccc-------cCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCc
Q 035891 75 LQSFAALHRLLTS-PS------------LQS-------IFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE 134 (309)
Q Consensus 75 ~~~~~~l~~~~~~-~~------------l~~-------~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~ 134 (309)
.+....++...-. .. +.. ....|+.|++.+ +.+++-..+.+.++++|+.|++++ +.+.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsy-NrL~ 396 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSY-NRLN 396 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeecc-cccc
Confidence 6655544331100 00 000 011233333333 222222123344455555555555 4455
Q ss_pred eEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccC
Q 035891 135 EMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPF 213 (309)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 213 (309)
+++..... .+..|+.|+++||+++.+| .+..++.|++|...++ .+..+ +.+..+
T Consensus 397 ~fpas~~~----------kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~f--------------Pe~~~l 451 (1081)
T KOG0618|consen 397 SFPASKLR----------KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSF--------------PELAQL 451 (1081)
T ss_pred cCCHHHHh----------chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeec--------------hhhhhc
Confidence 55444433 4445555555555444444 2333344444444332 22222 244556
Q ss_pred CccceeeccccccccccCCCcc-CCCCccEEeecCccc
Q 035891 214 ARLESLSLYALGNLRSIYPKAL-PFPHLKELEVNLCPK 250 (309)
Q Consensus 214 ~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~C~~ 250 (309)
+.|+.++++. ++|+.+..... .-|.|++|++++.+.
T Consensus 452 ~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 6666666664 45554433222 225666666666554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=4.2e-11 Score=115.23 Aligned_cols=184 Identities=17% Similarity=0.194 Sum_probs=113.3
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.+|.. +. .+|+.|++++|.+..+| ..+. .+|+.|+++.+....++..
T Consensus 220 ~nL~~L~Ls~N-~LtsLP~~-l~--~~L~~L~Ls~N~L~~LP-------------~~l~--s~L~~L~Ls~N~L~~LP~~ 280 (754)
T PRK15370 220 GNIKTLYANSN-QLTSIPAT-LP--DTIQEMELSINRITELP-------------ERLP--SALQSLDLFHNKISCLPEN 280 (754)
T ss_pred cCCCEEECCCC-ccccCChh-hh--ccccEEECcCCccCcCC-------------hhHh--CCCCEEECcCCccCccccc
Confidence 47899999998 88889876 43 47889999888885432 2221 3455555554433333221
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCcc-------------------ccccCCEEEEecCCCCceEEcCccCccc
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLA-------------------SLRHLEALDMTNCKDLEEMEIDYAGEEV 145 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~-------------------~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 145 (309)
+.. +|+.|++++| .++.++. .+. -.++|+.|++.+| .+..++..
T Consensus 281 -----l~~---sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~------ 343 (754)
T PRK15370 281 -----LPE---ELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPAS------ 343 (754)
T ss_pred -----cCC---CCcEEECCCC-ccccCcc-cchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChh------
Confidence 001 3555555543 2333321 111 1135555555553 34433321
Q ss_pred ccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 146 KRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
.+++|+.|++++|++..+|. ...++|++|+|++| .+..++. .+ .+.|+.|+++++
T Consensus 344 -------l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N-~Lt~LP~-------------~l--~~sL~~LdLs~N- 398 (754)
T PRK15370 344 -------LPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRN-ALTNLPE-------------NL--PAALQIMQASRN- 398 (754)
T ss_pred -------hcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCC-cCCCCCH-------------hH--HHHHHHHhhccC-
Confidence 35799999999997777762 33579999999998 4555542 21 247999999985
Q ss_pred cccccCCCcc----CCCCccEEeecCcc
Q 035891 226 NLRSIYPKAL----PFPHLKELEVNLCP 249 (309)
Q Consensus 226 ~L~~l~~~~~----~~~~L~~L~i~~C~ 249 (309)
++..+|.... .++.+..|++.+.|
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7888776432 45888999998865
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=3e-11 Score=117.96 Aligned_cols=221 Identities=22% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCcEEecCCCcC-CCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 5 VNLKCLNLEYTYR-IYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 5 ~~Lr~L~l~~~~~-l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
+.|+.|-+.++.. +..++.++|..++.|++||+++|... ..+|..++.|-+|+.|+++......+|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l------------~~LP~~I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL------------SKLPSSIGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc------------CcCChHHhhhhhhhcccccCCCccccch
Confidence 4688898888832 77888888899999999999998876 7788888899999988887666655543
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCC-CCceEEcCccCc---c-------ccc--CCC
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK-DLEEMEIDYAGE---E-------VKR--IRE 150 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~l~~l~~~~~~~---~-------~~~--~~~ 150 (309)
-.. ++. .|.+|++.....+..++ .....+.+|++|.+.... ............ + .+. ...
T Consensus 613 ~l~--~Lk----~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~ 685 (889)
T KOG4658|consen 613 GLG--NLK----KLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLED 685 (889)
T ss_pred HHH--HHH----hhheecccccccccccc-chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhh
Confidence 322 222 47778887766666653 233457778887776532 000000000000 0 000 000
Q ss_pred cccccCcc----eEEEeCc-eecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCc-cCCccceeecccc
Q 035891 151 THGFFSLH----KVSIWGS-KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLF-PFARLESLSLYAL 224 (309)
Q Consensus 151 ~~~~~~L~----~L~l~~c-~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~ 224 (309)
......|. .+.+.+| .-.....+..+.+|+.|.|.+|...+..+..... .... .|+++..+.+.+|
T Consensus 686 l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--------~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 686 LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES--------LIVLLCFPNLSKVSILNC 757 (889)
T ss_pred hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc--------cchhhhHHHHHHHHhhcc
Confidence 00112222 2222223 1222234667888999999998765433210000 0111 2666666666666
Q ss_pred ccccccCCCccCCCCccEEeecCcccCCC
Q 035891 225 GNLRSIYPKALPFPHLKELEVNLCPKLEK 253 (309)
Q Consensus 225 ~~L~~l~~~~~~~~~L~~L~i~~C~~L~~ 253 (309)
..++..... .-.|+|+.|.+..|+.+..
T Consensus 758 ~~~r~l~~~-~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 758 HMLRDLTWL-LFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred ccccccchh-hccCcccEEEEeccccccc
Confidence 655554432 2346777777777766655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=1.8e-10 Score=110.51 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=45.0
Q ss_pred CcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc
Q 035891 156 SLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL 235 (309)
Q Consensus 156 ~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~ 235 (309)
+|+.|++++|.+..+|. ..++|+.|++++|. +..++ ..+.+|+.|++++ ++++.+|....
T Consensus 383 ~L~~LdLs~N~Lt~LP~--l~s~L~~LdLS~N~-LssIP----------------~l~~~L~~L~Ls~-NqLt~LP~sl~ 442 (788)
T PRK15387 383 GLKELIVSGNRLTSLPV--LPSELKELMVSGNR-LTSLP----------------MLPSGLLSLSVYR-NQLTRLPESLI 442 (788)
T ss_pred ccceEEecCCcccCCCC--cccCCCEEEccCCc-CCCCC----------------cchhhhhhhhhcc-CcccccChHHh
Confidence 45555555554444432 12455555555542 33332 1234678888887 47888887777
Q ss_pred CCCCccEEeecCcc
Q 035891 236 PFPHLKELEVNLCP 249 (309)
Q Consensus 236 ~~~~L~~L~i~~C~ 249 (309)
.+++|+.|++++++
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 88899999998864
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-11 Score=107.31 Aligned_cols=208 Identities=16% Similarity=0.172 Sum_probs=140.6
Q ss_pred CCCCCcEEecCCCcCCCCCch-hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPG-QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
++.+||...|+++ .+...+. +....|++++.|+++.|-+..| ..+.+-+++|++|+.|+++.+.....
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw----------~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNW----------FPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhH----------HHHHHHHHhcccchhcccccccccCC
Confidence 6788999999998 8888774 3478899999999999988766 66777888999999999987655433
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeeccc-CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF-TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV 160 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L 160 (309)
.+-..... +++|+.|.+++|.-- .-... .+..+|+|+.|.+...+.+ -+...... .+..|+.|
T Consensus 188 ~~s~~~~~----l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~----------i~~~L~~L 251 (505)
T KOG3207|consen 188 ISSNTTLL----LSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEII-LIKATSTK----------ILQTLQEL 251 (505)
T ss_pred ccccchhh----hhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccccc-ceecchhh----------hhhHHhhc
Confidence 22111111 447999999998643 22112 3467899999999984321 12211221 68899999
Q ss_pred EEeCceeccc---CccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC--Ccc
Q 035891 161 SIWGSKLRHV---TWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP--KAL 235 (309)
Q Consensus 161 ~l~~c~l~~l---~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~--~~~ 235 (309)
+|+++++.++ +..+.+|.|+.|.++.|. +.++-.- ..........||+|++|.+... .+..|+. ...
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~------d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEP------DVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLR 323 (505)
T ss_pred cccCCcccccccccccccccchhhhhccccC-cchhcCC------CccchhhhcccccceeeecccC-ccccccccchhh
Confidence 9999955444 357889999999998874 4443210 0100023577999999999984 5666654 222
Q ss_pred CCCCccEEee
Q 035891 236 PFPHLKELEV 245 (309)
Q Consensus 236 ~~~~L~~L~i 245 (309)
.+++|+.|.+
T Consensus 324 ~l~nlk~l~~ 333 (505)
T KOG3207|consen 324 TLENLKHLRI 333 (505)
T ss_pred ccchhhhhhc
Confidence 4555555543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.07 E-value=1.4e-09 Score=104.62 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=15.5
Q ss_pred cCcceEEEeCceecccCccCCCCCccEEEEEc
Q 035891 155 FSLHKVSIWGSKLRHVTWLILAPNLKHIEVYN 186 (309)
Q Consensus 155 ~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~ 186 (309)
.+|+.|++++|+++.+|.. .++|+.|++++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~ 371 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL--PSELYKLWAYN 371 (788)
T ss_pred cccceEecCCCccCCCCCC--Ccccceehhhc
Confidence 3566666666655555421 23455555544
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.8e-12 Score=105.97 Aligned_cols=179 Identities=21% Similarity=0.244 Sum_probs=126.6
Q ss_pred CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch--hhhhhcCCcCccccCCCcCeEEEecCCCC
Q 035891 31 MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA--ALHRLLTSPSLQSIFSNTPSLCLRNCHSL 108 (309)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l 108 (309)
.||+||++...++. .....-+.++++|+.+.+.+.... ....+++.. +|+.++++.|+++
T Consensus 186 Rlq~lDLS~s~it~-----------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-------~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-----------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-------NLVRLNLSMCSGF 247 (419)
T ss_pred hhHHhhcchhheeH-----------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-------cceeecccccccc
Confidence 37888887777651 334455777888888888765443 233444433 6999999999998
Q ss_pred Ceeccc-CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--eec--ccCc-cCCCCCccEE
Q 035891 109 SSLSVF-TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS--KLR--HVTW-LILAPNLKHI 182 (309)
Q Consensus 109 ~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~l~--~l~~-l~~l~~L~~L 182 (309)
+..... -+.+++.|..|+++||...++....... |.-++|..|+++|| ++. ++.. ...+|+|.+|
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~---------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA---------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh---------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 887544 4578899999999999665544322221 14579999999999 432 2222 3468999999
Q ss_pred EEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc-cCCCccCCCCccEEeecCc
Q 035891 183 EVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS-IYPKALPFPHLKELEVNLC 248 (309)
Q Consensus 183 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~-l~~~~~~~~~L~~L~i~~C 248 (309)
++++|..++.-.. ..+..|+.|++|.++.|..+-. .-.+....|+|.+|++.+|
T Consensus 319 DLSD~v~l~~~~~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCF------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHH------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 9999988876432 4678899999999999965521 1123448899999999887
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=2.8e-12 Score=98.62 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=114.4
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
++.+...|-++.| +++.+|.. |..|.+|++|++.+|.+ +.++..+..+++|+.|++.-+....++
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nnqi-------------e~lp~~issl~klr~lnvgmnrl~~lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNNQI-------------EELPTSISSLPKLRILNVGMNRLNILP 95 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccchh-------------hhcChhhhhchhhhheecchhhhhcCc
Confidence 3456777889998 89999988 89999999999999998 577788888999999888644443333
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCC-eecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLS-SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS 161 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 161 (309)
.- +.+ ++.|+.|+++..+--+ ++| ..+-.|..|+.|.+++ +..+.++.+.. .+.+|+.|.
T Consensus 96 rg-----fgs-~p~levldltynnl~e~~lp-gnff~m~tlralyl~d-ndfe~lp~dvg-----------~lt~lqil~ 156 (264)
T KOG0617|consen 96 RG-----FGS-FPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGD-NDFEILPPDVG-----------KLTNLQILS 156 (264)
T ss_pred cc-----cCC-CchhhhhhccccccccccCC-cchhHHHHHHHHHhcC-CCcccCChhhh-----------hhcceeEEe
Confidence 22 111 4468888888754322 233 3455667788888887 67777777665 688888888
Q ss_pred EeCceecccC-ccCCCCCccEEEEEcCccccccccc
Q 035891 162 IWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISL 196 (309)
Q Consensus 162 l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~ 196 (309)
+..+.+-.+| .++.++.|++|.|.++ .++.++++
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccc-eeeecChh
Confidence 8888666666 5677888888888775 45556543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.97 E-value=2.4e-11 Score=114.64 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=132.2
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCcc------cc--CCcccchhh-----hhccCCCc
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSI------LF--GGSLVLVEE-----LLGLERLN 69 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~------l~--~~~~~~~~~-----l~~L~~L~ 69 (309)
..++|++|+...| .++.+|.. .+.+++|++|++..|.+..+|..+. +. ....--.+. =..+..|+
T Consensus 285 ~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 285 RITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 4567888899998 88999885 7779999999999999877665321 00 000000000 00122244
Q ss_pred eEEEEEecch--hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCccccc
Q 035891 70 VLTITLQSFA--ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKR 147 (309)
Q Consensus 70 ~L~l~~~~~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (309)
.|.+.++..+ .++-+.. +.+|+.|++++ +.+..+|...+.+++.|+.|++++ +.++.++.+..
T Consensus 363 ~LylanN~Ltd~c~p~l~~-------~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva------ 427 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVN-------FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVA------ 427 (1081)
T ss_pred HHHHhcCcccccchhhhcc-------ccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHH------
Confidence 4444433322 1222222 44799999999 678889877888999999999999 89999995544
Q ss_pred CCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccc
Q 035891 148 IRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGN 226 (309)
Q Consensus 148 ~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 226 (309)
.++.|++|...+|++..+|.+..++.|+.++++ |++++.+.. .....-|+|++|+++|.+.
T Consensus 428 -----~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l------------~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 428 -----NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTL------------PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -----hhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhh------------hhhCCCcccceeeccCCcc
Confidence 799999999988888888888899999999995 556766642 1111228999999999754
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.95 E-value=5.4e-11 Score=102.62 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=45.8
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEE-ecchhh
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITL-QSFAAL 81 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~-~~~~~l 81 (309)
..++|..| .|+.||+++|+.+++|+.||+++|.+. ...+..+..+.+|..|-+.. +.++.+
T Consensus 70 veirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is------------~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 70 VEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNIS------------FIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred eEEEeccC-CcccCChhhccchhhhceecccccchh------------hcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 35788888 999999999999999999999999997 45555666666666665544 333433
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.90 E-value=2.4e-11 Score=93.55 Aligned_cols=165 Identities=18% Similarity=0.268 Sum_probs=124.8
Q ss_pred CCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcC
Q 035891 19 YKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTP 98 (309)
Q Consensus 19 ~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~ 98 (309)
..+|. +..+.+...|.+++|+++ .++..++.+.+|+.|++.++....++.-.. . ++.|+
T Consensus 24 ~~~~g--Lf~~s~ITrLtLSHNKl~-------------~vppnia~l~nlevln~~nnqie~lp~~is--s----l~klr 82 (264)
T KOG0617|consen 24 EELPG--LFNMSNITRLTLSHNKLT-------------VVPPNIAELKNLEVLNLSNNQIEELPTSIS--S----LPKLR 82 (264)
T ss_pred hhccc--ccchhhhhhhhcccCcee-------------ecCCcHHHhhhhhhhhcccchhhhcChhhh--h----chhhh
Confidence 34554 556777788889999984 677788999999999998877766654322 2 33588
Q ss_pred eEEEecCCCCCeecccCccccccCCEEEEecCCCCc--eEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCC
Q 035891 99 SLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE--EMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLIL 175 (309)
Q Consensus 99 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~ 175 (309)
.|++.- +.+..+| ..++.++.|+.|++.+ +++. +++..++ .+..|+-|+++++.++-+| .++.
T Consensus 83 ~lnvgm-nrl~~lp-rgfgs~p~levldlty-nnl~e~~lpgnff-----------~m~tlralyl~dndfe~lp~dvg~ 148 (264)
T KOG0617|consen 83 ILNVGM-NRLNILP-RGFGSFPALEVLDLTY-NNLNENSLPGNFF-----------YMTTLRALYLGDNDFEILPPDVGK 148 (264)
T ss_pred heecch-hhhhcCc-cccCCCchhhhhhccc-cccccccCCcchh-----------HHHHHHHHHhcCCCcccCChhhhh
Confidence 888875 5566665 6788999999999998 4543 3454444 5788999999999777776 6889
Q ss_pred CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC
Q 035891 176 APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK 233 (309)
Q Consensus 176 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~ 233 (309)
+++|+.|.+.++..+ +++ ..++.+.+|+.|.+.+ +.++-+|.+
T Consensus 149 lt~lqil~lrdndll-~lp-------------keig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLL-SLP-------------KEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred hcceeEEeeccCchh-hCc-------------HHHHHHHHHHHHhccc-ceeeecChh
Confidence 999999999987544 343 5788999999999999 589888853
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=3.5e-10 Score=99.43 Aligned_cols=213 Identities=21% Similarity=0.132 Sum_probs=114.4
Q ss_pred CCCCCcEEecCCCcCCC-----CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891 3 YLVNLKCLNLEYTYRIY-----KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS 77 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~ 77 (309)
.+.+|++|+++++ .++ .++.. +...++|++|+++++.+...+... ......+..+++|+.|+++.+.
T Consensus 21 ~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~------~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 21 KLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGL------QSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHH------HHHHHHHHhcCceeEEEccCCC
Confidence 3556888888888 663 35554 667778888888877664111111 2344566778888888887655
Q ss_pred chh--hhhhcCCcCccccCCCcCeEEEecCCCCCe-ec--ccCcccc-ccCCEEEEecCCCCceEEc----CccCccccc
Q 035891 78 FAA--LHRLLTSPSLQSIFSNTPSLCLRNCHSLSS-LS--VFTLASL-RHLEALDMTNCKDLEEMEI----DYAGEEVKR 147 (309)
Q Consensus 78 ~~~--l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~-~~--~~~l~~l-~~L~~L~l~~~~~l~~l~~----~~~~~~~~~ 147 (309)
... ...+...... ++|++|++++|..... .. ...+..+ ++|+.|++++|. +..-.. ....
T Consensus 93 ~~~~~~~~~~~l~~~----~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~----- 162 (319)
T cd00116 93 LGPDGCGVLESLLRS----SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALR----- 162 (319)
T ss_pred CChhHHHHHHHHhcc----CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHH-----
Confidence 431 1111111111 1588888888653211 10 0133455 778888888753 331110 0111
Q ss_pred CCCcccccCcceEEEeCceecc-----cC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeec
Q 035891 148 IRETHGFFSLHKVSIWGSKLRH-----VT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSL 221 (309)
Q Consensus 148 ~~~~~~~~~L~~L~l~~c~l~~-----l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 221 (309)
.+++|++|++++|.+.. ++ .+...++|++|++++|.......... . ..+..+++|++|++
T Consensus 163 -----~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------~--~~~~~~~~L~~L~l 228 (319)
T cd00116 163 -----ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL-------A--ETLASLKSLEVLNL 228 (319)
T ss_pred -----hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH-------H--HHhcccCCCCEEec
Confidence 34578888888774431 11 23344678888887774221110000 0 23445677888888
Q ss_pred cccccccccCCCcc------CCCCccEEeecCc
Q 035891 222 YALGNLRSIYPKAL------PFPHLKELEVNLC 248 (309)
Q Consensus 222 ~~~~~L~~l~~~~~------~~~~L~~L~i~~C 248 (309)
++| .++....... ..+.|++|++.+|
T Consensus 229 s~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 229 GDN-NLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred CCC-cCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 775 3442111100 2367778887777
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=6.4e-10 Score=97.80 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=71.5
Q ss_pred CCCCcEEecCCCcCCCC-------CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhcc---CCCceEEE
Q 035891 4 LVNLKCLNLEYTYRIYK-------IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGL---ERLNVLTI 73 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~-------lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L---~~L~~L~l 73 (309)
.+.|++|+++++ .+.. ++.. +.++++|+.|++++|.+. ......+..+ ++|+.|++
T Consensus 50 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~------------~~~~~~~~~l~~~~~L~~L~l 115 (319)
T cd00116 50 QPSLKELCLSLN-ETGRIPRGLQSLLQG-LTKGCGLQELDLSDNALG------------PDGCGVLESLLRSSSLQELKL 115 (319)
T ss_pred CCCceEEecccc-ccCCcchHHHHHHHH-HHhcCceeEEEccCCCCC------------hhHHHHHHHHhccCcccEEEe
Confidence 344666666665 4432 2222 555666777777666664 2222223333 33666666
Q ss_pred EEecchh--hhhhcC-CcCccccCCCcCeEEEecCCCCCeec---ccCccccccCCEEEEecCCCCceEEcCccCccccc
Q 035891 74 TLQSFAA--LHRLLT-SPSLQSIFSNTPSLCLRNCHSLSSLS---VFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKR 147 (309)
Q Consensus 74 ~~~~~~~--l~~~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (309)
+.+.... ...+.. .... .++|+.|++++|.-..... ...+..+++|+.|++.+| .+..-.......
T Consensus 116 s~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~---- 187 (319)
T cd00116 116 NNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAE---- 187 (319)
T ss_pred eCCccchHHHHHHHHHHHhC---CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHH----
Confidence 6544331 111110 0011 0256667766654321110 012344456666666663 333211000000
Q ss_pred CCCcccccCcceEEEeCceeccc-----C-ccCCCCCccEEEEEcCc
Q 035891 148 IRETHGFFSLHKVSIWGSKLRHV-----T-WLILAPNLKHIEVYNCR 188 (309)
Q Consensus 148 ~~~~~~~~~L~~L~l~~c~l~~l-----~-~l~~l~~L~~L~l~~c~ 188 (309)
....+++|+.|++++|.+... . .+..+++|++|++++|.
T Consensus 188 --~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 188 --GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred --HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 000234667777766633211 1 23445667777776653
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.77 E-value=2.2e-10 Score=98.92 Aligned_cols=226 Identities=16% Similarity=0.182 Sum_probs=126.0
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecc-cCCCCccCCc----------cccCC--cccchhhhhccCC
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFK-CGSSKQESDS----------ILFGG--SLVLVEELLGLER 67 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~ 67 (309)
|+.+++||.|||+.| .|+.|.++.|..|.+|-.|.+.+ |++..++.+. .+... .-...+.+..|++
T Consensus 87 F~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred ccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 678999999999999 99999777899999988888877 8888776642 01110 1122344666777
Q ss_pred CceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCc-----------cccccCCEEEEecCCCCceE
Q 035891 68 LNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-----------ASLRHLEALDMTNCKDLEEM 136 (309)
Q Consensus 68 L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-----------~~l~~L~~L~l~~~~~l~~l 136 (309)
|..|.+..+....+..-. +++ +.+++.+.+........-.++.+ +.+.......+.. ..+..+
T Consensus 166 l~lLslyDn~~q~i~~~t----f~~-l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~Ri~q~ 239 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGT----FQG-LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KRINQE 239 (498)
T ss_pred cchhcccchhhhhhcccc----ccc-hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-HHhccc
Confidence 777777655444333211 111 22456666554332111111100 0000000000000 000011
Q ss_pred EcCccC----cc------cccCCC------cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccc
Q 035891 137 EIDYAG----EE------VKRIRE------THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEK 198 (309)
Q Consensus 137 ~~~~~~----~~------~~~~~~------~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~ 198 (309)
...-+. +. ..++.. -+.+++|++|++++|+++.+. ++..+..+++|.+..+ .++.+-.
T Consensus 240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~--- 315 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSS--- 315 (498)
T ss_pred chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHH---
Confidence 000000 00 000000 115678888888888776664 5677788888888765 4554432
Q ss_pred cCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEEeecC
Q 035891 199 LGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKELEVNL 247 (309)
Q Consensus 199 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~ 247 (309)
..+.++..|+.|.|.+ ++++.+..+.+ ...+|.+|.+-.
T Consensus 316 ---------~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 316 ---------GMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred ---------HhhhccccceeeeecC-CeeEEEecccccccceeeeeehcc
Confidence 3467788888999988 47887776665 667777777644
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.5e-09 Score=92.72 Aligned_cols=182 Identities=20% Similarity=0.197 Sum_probs=122.6
Q ss_pred cCCCCCceEEecccCCCCccCCccccCCcccch--hhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEec
Q 035891 27 SNLKMLEALRMFKCGSSKQESDSILFGGSLVLV--EELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRN 104 (309)
Q Consensus 27 ~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~--~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~ 104 (309)
+++.+|+...+.++... ... +..+.+++++.|+++.+-....... ..+...+++|+.|+++.
T Consensus 118 sn~kkL~~IsLdn~~V~-------------~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~ 181 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-------------DAGIEEYSKILPNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSS 181 (505)
T ss_pred hhHHhhhheeecCcccc-------------ccchhhhhhhCCcceeecchhhhHHhHHHH---HHHHHhcccchhccccc
Confidence 67899999999988874 222 4678899999999976655433332 22333466899999998
Q ss_pred CCCCCeeccc-CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-ee-cccCccCCCCCccE
Q 035891 105 CHSLSSLSVF-TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KL-RHVTWLILAPNLKH 181 (309)
Q Consensus 105 ~~~l~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l-~~l~~l~~l~~L~~ 181 (309)
+ .+..+... .-..+++|+.|.+.+|. +..-...+... .||+|+.|++..| .+ .......-+..|+.
T Consensus 182 N-rl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~---------~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 182 N-RLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILL---------TFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred c-cccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHH---------hCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 4 33433212 12356789999999984 33211122211 6999999999988 22 11112344678999
Q ss_pred EEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC---Cc----cCCCCccEEeecCc
Q 035891 182 IEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP---KA----LPFPHLKELEVNLC 248 (309)
Q Consensus 182 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~---~~----~~~~~L~~L~i~~C 248 (309)
|+|+++..+..-.. ...+.||.|+.|.++.| .+.++.. +. ..||+|++|.+...
T Consensus 251 LdLs~N~li~~~~~------------~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQG------------YKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred ccccCCcccccccc------------cccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC
Confidence 99999876654422 45788999999999986 5665543 21 27999999998774
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=1.1e-08 Score=81.20 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=24.9
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceeccc---Cc
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHV---TW 172 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l---~~ 172 (309)
+|+.|++++ +.++.+ ..++.+++|+.|++++ +.+.++...... .+|+|+.|++++|++.++ ..
T Consensus 43 ~L~~L~Ls~-N~I~~l--~~l~~L~~L~~L~L~~-N~I~~i~~~l~~----------~lp~L~~L~L~~N~I~~l~~l~~ 108 (175)
T PF14580_consen 43 KLEVLDLSN-NQITKL--EGLPGLPRLKTLDLSN-NRISSISEGLDK----------NLPNLQELYLSNNKISDLNELEP 108 (175)
T ss_dssp T--EEE-TT-S--S----TT----TT--EEE--S-S---S-CHHHHH----------H-TT--EEE-TTS---SCCCCGG
T ss_pred CCCEEECCC-CCCccc--cCccChhhhhhcccCC-CCCCccccchHH----------hCCcCCEEECcCCcCCChHHhHH
Confidence 355555555 233333 2345556666666666 555555322211 356677777766633332 24
Q ss_pred cCCCCCccEEEEEcCc
Q 035891 173 LILAPNLKHIEVYNCR 188 (309)
Q Consensus 173 l~~l~~L~~L~l~~c~ 188 (309)
+..+|+|++|++.+++
T Consensus 109 L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp GGG-TT--EEE-TT-G
T ss_pred HHcCCCcceeeccCCc
Confidence 5556667777766654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=9.4e-09 Score=81.53 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=25.4
Q ss_pred CcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCceEEc-CccCcccccCCCcccccCcceEEEeCceecccC--
Q 035891 96 NTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEEMEI-DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-- 171 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-- 171 (309)
+|+.|++++ +.++++. ..+ ..+++|+.|++.+ +.+.++.. .... .+++|+.|++.+|-+..-+
T Consensus 65 ~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~----------~l~~L~~L~L~~NPv~~~~~Y 131 (175)
T PF14580_consen 65 RLKTLDLSN-NRISSIS-EGLDKNLPNLQELYLSN-NKISDLNELEPLS----------SLPKLRVLSLEGNPVCEKKNY 131 (175)
T ss_dssp T--EEE--S-S---S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGGG----------G-TT--EEE-TT-GGGGSTTH
T ss_pred hhhhcccCC-CCCCccc-cchHHhCCcCCEEECcC-CcCCChHHhHHHH----------cCCCcceeeccCCcccchhhH
Confidence 355555554 2333332 112 2355566666554 44444322 1111 5666777777666222211
Q ss_pred ---ccCCCCCccEEEEEc
Q 035891 172 ---WLILAPNLKHIEVYN 186 (309)
Q Consensus 172 ---~l~~l~~L~~L~l~~ 186 (309)
.+..+|+|+.|+-..
T Consensus 132 R~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 132 RLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHHHH-TT-SEETTEE
T ss_pred HHHHHHHcChhheeCCEE
Confidence 245667777776544
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.1e-08 Score=85.80 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCCcEEecCCCc------CCC--CCchhhhcCCCCCceEEecccCCC
Q 035891 5 VNLKCLNLEYTY------RIY--KIPGQVISNLKMLEALRMFKCGSS 43 (309)
Q Consensus 5 ~~Lr~L~l~~~~------~l~--~lp~~~i~~L~~L~~L~l~~~~~~ 43 (309)
..|.+|.++++. ++. .+|-+ +.-.++|.++.++.|.-.
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~-l~~f~~l~~~~~s~~~~~ 227 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFN-LNAFRNLKTLKFSALSTE 227 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccc-hHHhhhhheeeeeccchh
Confidence 456677776551 111 13444 455677888888777653
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=8.2e-08 Score=62.59 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=50.8
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ 76 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~ 76 (309)
++|++|++++| .++.+|.+++..+++|++|++++|.+. ...++.+..+++|+.|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~------------~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLT------------SIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSES------------EEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccC------------ccCHHHHcCCCCCCEEeCcCC
Confidence 47899999999 999999888999999999999999996 444566888999999988643
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.3e-09 Score=91.05 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=125.4
Q ss_pred CCcEEecCCCcCCCC--CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch---h
Q 035891 6 NLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA---A 80 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~---~ 80 (309)
.|++||++.+ .++. +.. +++.+.+|+-|.+.+.+.. +.+...++.-.+|+.++++...+- .
T Consensus 186 Rlq~lDLS~s-~it~stl~~-iLs~C~kLk~lSlEg~~Ld------------D~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHG-ILSQCSKLKNLSLEGLRLD------------DPIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhHHhhcchh-heeHHHHHH-HHHHHHhhhhccccccccC------------cHHHHHHhccccceeeccccccccchhH
Confidence 4889999988 7663 443 5788999999999999986 778888999999999999754432 2
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeec---ccCccccccCCEEEEecCCC-CceEEcCccCcccccCCCcccccC
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLS---VFTLASLRHLEALDMTNCKD-LEEMEIDYAGEEVKRIRETHGFFS 156 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~ 156 (309)
+.-+.. + ++.|..|+++-|...+... ..+++ ++|+.|++++|.. +..-....... .+|+
T Consensus 252 ~~ll~~--s----cs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~---------rcp~ 314 (419)
T KOG2120|consen 252 LQLLLS--S----CSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVR---------RCPN 314 (419)
T ss_pred HHHHHH--h----hhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHH---------hCCc
Confidence 222222 1 4479999999887655431 12333 4899999998743 11111112111 6899
Q ss_pred cceEEEeCc-eecc--cCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 157 LHKVSIWGS-KLRH--VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 157 L~~L~l~~c-~l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
|.+|++++| .++. +..+..++.|++|.++.|+.+..-. ...+...|.|.+|++.+|-
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~------------~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET------------LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH------------eeeeccCcceEEEEecccc
Confidence 999999999 6655 1135678999999999998663221 1467889999999999984
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.9e-07 Score=84.80 Aligned_cols=172 Identities=26% Similarity=0.327 Sum_probs=103.6
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCC-CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLK-MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
.+..++.|++.++ .+..+|.. ++.+. +|+.|+++++.+ ..++..++.+++|+.|++..+....+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N~i-------------~~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDNKI-------------ESLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred cccceeEEecCCc-ccccCccc-cccchhhcccccccccch-------------hhhhhhhhccccccccccCCchhhhh
Confidence 3456777888887 77888775 56664 788888888777 34446777888888888876666665
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS 161 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 161 (309)
+.... . +++|+.|++++ +.+..++ ........|+++.+.+. .......... .+.++..+.
T Consensus 179 ~~~~~--~----~~~L~~L~ls~-N~i~~l~-~~~~~~~~L~~l~~~~N-~~~~~~~~~~-----------~~~~l~~l~ 238 (394)
T COG4886 179 PKLLS--N----LSNLNNLDLSG-NKISDLP-PEIELLSALEELDLSNN-SIIELLSSLS-----------NLKNLSGLE 238 (394)
T ss_pred hhhhh--h----hhhhhheeccC-CccccCc-hhhhhhhhhhhhhhcCC-cceecchhhh-----------hcccccccc
Confidence 55431 1 22577788777 4455554 22233345777777763 2222222221 455666666
Q ss_pred EeCceeccc-CccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccc
Q 035891 162 IWGSKLRHV-TWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYAL 224 (309)
Q Consensus 162 l~~c~l~~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 224 (309)
+.++++..+ ..++.+++++.|+++++ .+.++. ..+.+.+++.|++.+.
T Consensus 239 l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~--------------~~~~~~~l~~L~~s~n 287 (394)
T COG4886 239 LSNNKLEDLPESIGNLSNLETLDLSNN-QISSIS--------------SLGSLTNLRELDLSGN 287 (394)
T ss_pred cCCceeeeccchhccccccceeccccc-cccccc--------------cccccCccCEEeccCc
Confidence 555544442 24566667777777654 455553 3556667777777663
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=5.2e-08 Score=81.81 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=67.4
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
.|+.+|+++| .++.|.++ +.-++.++.|++++|++. ..+.++.|.+|+.|+++++....+..|-
T Consensus 285 ~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~--------------~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIR--------------TVQNLAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred hhhhcccccc-chhhhhhh-hhhccceeEEecccccee--------------eehhhhhcccceEeecccchhHhhhhhH
Confidence 4677888888 78888877 777788888888888875 2355777888888888766555555443
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM 136 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l 136 (309)
. ++. |++.|.+.+ +.++++ ..+..+-+|..|++.+ ++++.+
T Consensus 349 ~--KLG----NIKtL~La~-N~iE~L--SGL~KLYSLvnLDl~~-N~Ie~l 389 (490)
T KOG1259|consen 349 L--KLG----NIKTLKLAQ-NKIETL--SGLRKLYSLVNLDLSS-NQIEEL 389 (490)
T ss_pred h--hhc----CEeeeehhh-hhHhhh--hhhHhhhhheeccccc-cchhhH
Confidence 3 222 577777766 333433 3344555555666655 444444
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.27 E-value=3.2e-08 Score=86.34 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=19.8
Q ss_pred CCCCcEEecCCCcCCCCCchh-hhcCCCCCceEEecccC
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQ-VISNLKMLEALRMFKCG 41 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~-~i~~L~~L~~L~l~~~~ 41 (309)
..+|++|++..|..++...-. ....+++|.+|+++.|.
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 345666666665444432221 23456666666666554
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=5e-07 Score=82.03 Aligned_cols=151 Identities=24% Similarity=0.317 Sum_probs=113.3
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
+|+.|+++++ .+..+|.. ++.+++|+.|++++|.+. .++.....+++|+.|+++++....++...
T Consensus 141 nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~-------------~l~~~~~~~~~L~~L~ls~N~i~~l~~~~ 205 (394)
T COG4886 141 NLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLS-------------DLPKLLSNLSNLNNLDLSGNKISDLPPEI 205 (394)
T ss_pred hccccccccc-chhhhhhh-hhccccccccccCCchhh-------------hhhhhhhhhhhhhheeccCCccccCchhh
Confidence 8999999999 99999866 899999999999999994 45555558899999999888777776643
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
.... +|+.+.+.+....... ..+..+.++..+.+.. +.+..++ ...+ .+++++.|++++|
T Consensus 206 ~~~~------~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~-n~~~~~~-~~~~----------~l~~l~~L~~s~n 265 (394)
T COG4886 206 ELLS------ALEELDLSNNSIIELL--SSLSNLKNLSGLELSN-NKLEDLP-ESIG----------NLSNLETLDLSNN 265 (394)
T ss_pred hhhh------hhhhhhhcCCcceecc--hhhhhcccccccccCC-ceeeecc-chhc----------cccccceeccccc
Confidence 2111 5889999885433333 3456667777777554 4444432 2222 6788999999999
Q ss_pred eecccCccCCCCCccEEEEEcCcccc
Q 035891 166 KLRHVTWLILAPNLKHIEVYNCRYLD 191 (309)
Q Consensus 166 ~l~~l~~l~~l~~L~~L~l~~c~~l~ 191 (309)
.+..++.++.+.+++.|++++.....
T Consensus 266 ~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 266 QISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccccccccCccCEEeccCccccc
Confidence 88888778888999999998865443
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.7e-06 Score=51.99 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=33.1
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCC
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSK 44 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 44 (309)
++||+|++++| .++.+|.. +++|++|++|++++|.+..
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCC
Confidence 47999999999 99999997 9999999999999999863
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.16 E-value=5.4e-08 Score=88.08 Aligned_cols=189 Identities=19% Similarity=0.251 Sum_probs=131.3
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS 87 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~ 87 (309)
...|++.| .+..+|.. +..+..|+.+.++.|.+ ..++..+.++..|..++++.+....++.-.-.
T Consensus 78 ~~aDlsrN-R~~elp~~-~~~f~~Le~liLy~n~~-------------r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 78 VFADLSRN-RFSELPEE-ACAFVSLESLILYHNCI-------------RTIPEAICNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred hhhhcccc-ccccCchH-HHHHHHHHHHHHHhccc-------------eecchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence 34567777 77777776 67777777777777766 66778888999999999987777666654333
Q ss_pred cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891 88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL 167 (309)
Q Consensus 88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l 167 (309)
. -|+.|.+++ ++++.+| ..++....|..|+.+. +++..++.... .+.+|+.|.+..+.+
T Consensus 143 l-------pLkvli~sN-Nkl~~lp-~~ig~~~tl~~ld~s~-nei~slpsql~-----------~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 143 L-------PLKVLIVSN-NKLTSLP-EEIGLLPTLAHLDVSK-NEIQSLPSQLG-----------YLTSLRDLNVRRNHL 201 (722)
T ss_pred C-------cceeEEEec-CccccCC-cccccchhHHHhhhhh-hhhhhchHHhh-----------hHHHHHHHHHhhhhh
Confidence 3 277888887 5677777 4456777888888887 57888876665 678888888888877
Q ss_pred cccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc---cCCCCccEE
Q 035891 168 RHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA---LPFPHLKEL 243 (309)
Q Consensus 168 ~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~---~~~~~L~~L 243 (309)
.++| .+..+ .|..|+++ |+.+..++ ..+..|..|++|.|.+.| |++=|... +-..=.++|
T Consensus 202 ~~lp~El~~L-pLi~lDfS-cNkis~iP-------------v~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 202 EDLPEELCSL-PLIRLDFS-CNKISYLP-------------VDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYL 265 (722)
T ss_pred hhCCHHHhCC-ceeeeecc-cCceeecc-------------hhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeee
Confidence 7776 23333 46777874 56777776 577888888888888754 55433321 122334667
Q ss_pred eecCc
Q 035891 244 EVNLC 248 (309)
Q Consensus 244 ~i~~C 248 (309)
++.-|
T Consensus 266 ~~qA~ 270 (722)
T KOG0532|consen 266 STQAC 270 (722)
T ss_pred cchhc
Confidence 77777
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=7e-06 Score=53.34 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=31.5
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
+|+.|+++++ .++.++...+..+++|+.|++++ +.++.++...+. .+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~----------~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFS----------NLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTT----------TSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHc----------CCCCCCEEeCcCC
Confidence 4555666553 45555544555555666666654 455555554443 4555555555554
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=6.4e-06 Score=73.49 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=52.8
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eecccCccC
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHVTWLI 174 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l~~l~ 174 (309)
++..|++++| .+..+| .++ ++|+.|.+.+|++++.++.. .+++|++|.+++| ++..+|
T Consensus 53 ~l~~L~Is~c-~L~sLP--~LP--~sLtsL~Lsnc~nLtsLP~~-------------LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 53 ASGRLYIKDC-DIESLP--VLP--NELTEITIENCNNLTTLPGS-------------IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred CCCEEEeCCC-CCcccC--CCC--CCCcEEEccCCCCcccCCch-------------hhhhhhheEccCcccccccc---
Confidence 6899999998 677775 333 37999999999998777632 4579999999999 877665
Q ss_pred CCCCccEEEEEc
Q 035891 175 LAPNLKHIEVYN 186 (309)
Q Consensus 175 ~l~~L~~L~l~~ 186 (309)
++|+.|++..
T Consensus 112 --~sLe~L~L~~ 121 (426)
T PRK15386 112 --ESVRSLEIKG 121 (426)
T ss_pred --cccceEEeCC
Confidence 5688888853
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=1.1e-05 Score=71.98 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=31.4
Q ss_pred hhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCc
Q 035891 61 ELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE 134 (309)
Q Consensus 61 ~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~ 134 (309)
.+..+.+++.|+++.+....++ ..+ . +|+.|.+.+|..++.++ ..++ ++|+.|++.+|.++.
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP---~LP---~---sLtsL~Lsnc~nLtsLP-~~LP--~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP---VLP---N---ELTEITIENCNNLTTLP-GSIP--EGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC---CCC---C---CCcEEEccCCCCcccCC-chhh--hhhhheEccCccccc
Confidence 3444566666666544333332 111 1 56666666666665554 1222 356666666665444
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=6e-07 Score=78.59 Aligned_cols=217 Identities=16% Similarity=0.229 Sum_probs=131.1
Q ss_pred CCCCCcEEecCCCcCCCC--CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhh-hccCCCceEEEEEec-c
Q 035891 3 YLVNLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL-LGLERLNVLTITLQS-F 78 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~~L~l~~~~-~ 78 (309)
..++|.||+++.|..++. +.. ....++.++.+-.++|.-... ..+..+ +....+..+++.... .
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l-----------e~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL-----------EALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH-----------HHHHHHhccChHhhccchhhhccc
Confidence 457899999999966664 322 245677788887777654311 111111 111223333321110 1
Q ss_pred hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCc
Q 035891 79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSL 157 (309)
Q Consensus 79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L 157 (309)
+...-+..... ++.|+.++.++|....+...-.+ .+..+|+.+-+.+|..+........+. +.+.|
T Consensus 282 TD~~~~~i~~~----c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---------n~~~L 348 (483)
T KOG4341|consen 282 TDEDLWLIACG----CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---------NCPHL 348 (483)
T ss_pred cchHHHHHhhh----hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc---------CChhh
Confidence 11111111111 33688888888888766654334 466789999999998887777766553 78889
Q ss_pred ceEEEeCc-eeccc---CccCCCCCccEEEEEcCcccccc-ccccccCCcCcccccCCccCCccceeeccccccccccCC
Q 035891 158 HKVSIWGS-KLRHV---TWLILAPNLKHIEVYNCRYLDEI-ISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP 232 (309)
Q Consensus 158 ~~L~l~~c-~l~~l---~~l~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 232 (309)
+.+++.+| ...+- ..-.+.|.|+.+.++.|..+++- +.+.. ....+...|..+.+.+|+.++.-..
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~---------~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS---------SSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh---------hccccccccceeeecCCCCchHHHH
Confidence 99999888 33322 12345688999999888777654 10000 2335667888888888887765433
Q ss_pred Ccc-CCCCccEEeecCcccCCC
Q 035891 233 KAL-PFPHLKELEVNLCPKLEK 253 (309)
Q Consensus 233 ~~~-~~~~L~~L~i~~C~~L~~ 253 (309)
+.. .++.||.+++.+|....+
T Consensus 420 e~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HHHhhCcccceeeeechhhhhh
Confidence 332 678888888888877655
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.79 E-value=2.1e-06 Score=78.11 Aligned_cols=125 Identities=21% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccc---------c-CCcccchhhhhccCCCceE
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSIL---------F-GGSLVLVEELLGLERLNVL 71 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l---------~-~~~~~~~~~l~~L~~L~~L 71 (309)
++|..|.||+++.| .+..+|.. +..|+ |++|.+++|+++..|.++.+ . .....++..++.+.+|+.|
T Consensus 118 ~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 118 CNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence 45667777788877 77777776 55554 77777777777544443210 0 0112234444444555555
Q ss_pred EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcC
Q 035891 72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEID 139 (309)
Q Consensus 72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 139 (309)
++..+....+++-.... .|..|+++. +.+..+| .++-+|++|++|-+.+ +-+++-++.
T Consensus 195 ~vrRn~l~~lp~El~~L-------pLi~lDfSc-Nkis~iP-v~fr~m~~Lq~l~Len-NPLqSPPAq 252 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSL-------PLIRLDFSC-NKISYLP-VDFRKMRHLQVLQLEN-NPLQSPPAQ 252 (722)
T ss_pred HHhhhhhhhCCHHHhCC-------ceeeeeccc-Cceeecc-hhhhhhhhheeeeecc-CCCCCChHH
Confidence 44444433333221111 144455443 4444454 2344555555555554 344444443
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=3.5e-06 Score=72.24 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=17.8
Q ss_pred CCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecc
Q 035891 4 LVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFK 39 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~ 39 (309)
...+.++++++| .+.. +.+ ++.+.++|+.-++++
T Consensus 29 ~~s~~~l~lsgn-t~G~EAa~~i~~-~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 29 MDSLTKLDLSGN-TFGTEAARAIAK-VLASKKELREVNLSD 67 (382)
T ss_pred cCceEEEeccCC-chhHHHHHHHHH-HHhhcccceeeehHh
Confidence 345666677766 4442 222 245555565555543
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=2.9e-06 Score=72.70 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=112.7
Q ss_pred CCCCCcEEecCCCc--CC-CCCchh------hhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEE
Q 035891 3 YLVNLKCLNLEYTY--RI-YKIPGQ------VISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTI 73 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~--~l-~~lp~~------~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l 73 (309)
+.+.||..++++-. .. ..+|.. ++-..++|++|++++|-+..- ....+-.-+.+...|+.|.+
T Consensus 56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~--------g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK--------GIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc--------chHHHHHHHHhccCHHHHhh
Confidence 34566666666430 11 124432 133556777788777776510 00112222455677777777
Q ss_pred EEecchh---------hhhhcCCcCccccCCCcCeEEEecCCCCCeeccc----CccccccCCEEEEecCCCCceEEc--
Q 035891 74 TLQSFAA---------LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF----TLASLRHLEALDMTNCKDLEEMEI-- 138 (309)
Q Consensus 74 ~~~~~~~---------l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~l~~l~~-- 138 (309)
.+++... +.++....+..+ .+.|+.+...+ +.+.+.+.. .+...+.|+.+.+.. +.+..-+.
T Consensus 128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~-~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~a 204 (382)
T KOG1909|consen 128 NNCGLGPEAGGRLGRALFELAVNKKAAS-KPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTA 204 (382)
T ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCC-CcceEEEEeec-cccccccHHHHHHHHHhccccceEEEec-ccccCchhHH
Confidence 6665432 112222222222 44677777776 445554321 345557788888776 44433322
Q ss_pred --CccCcccccCCCcccccCcceEEEeCceecccC------ccCCCCCccEEEEEcCccccccccccccCCcCcccccCC
Q 035891 139 --DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT------WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL 210 (309)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~------~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 210 (309)
.... .+++|+.|++.+|-++.-. .+..+|+|+.|++++|..-..-. .++.. ...
T Consensus 205 l~eal~----------~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga-----~a~~~---al~ 266 (382)
T KOG1909|consen 205 LAEALE----------HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA-----IAFVD---ALK 266 (382)
T ss_pred HHHHHH----------hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH-----HHHHH---HHh
Confidence 1111 5788888888888222111 34566788888888884221110 00000 112
Q ss_pred ccCCccceeeccccccccc-----cCCCccCCCCccEEeecCc
Q 035891 211 FPFARLESLSLYALGNLRS-----IYPKALPFPHLKELEVNLC 248 (309)
Q Consensus 211 ~~~~~L~~L~L~~~~~L~~-----l~~~~~~~~~L~~L~i~~C 248 (309)
..+|+|+.|.+.++ .++. +.......|.|+.|.+.+|
T Consensus 267 ~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 267 ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 44788888888875 3432 1112224788888888887
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=1.6e-06 Score=79.29 Aligned_cols=99 Identities=32% Similarity=0.372 Sum_probs=44.6
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
.++.++++.+ .+..+-.. ++.+++|..|++.++.+. .+...+..+++|+.|+++++.+..+..+.
T Consensus 73 ~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n~i~-------------~i~~~l~~~~~L~~L~ls~N~I~~i~~l~ 137 (414)
T KOG0531|consen 73 SLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDNKIE-------------KIENLLSSLVNLQVLDLSFNKITKLEGLS 137 (414)
T ss_pred hHHhhccchh-hhhhhhcc-cccccceeeeeccccchh-------------hcccchhhhhcchheeccccccccccchh
Confidence 3344444444 44443222 455555555555555553 11111445555555555555444444333
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEec
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTN 129 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 129 (309)
... .|+.|++.++ .+..+ ..+..+++|+.+++++
T Consensus 138 ~l~-------~L~~L~l~~N-~i~~~--~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 138 TLT-------LLKELNLSGN-LISDI--SGLESLKSLKLLDLSY 171 (414)
T ss_pred hcc-------chhhheeccC-cchhc--cCCccchhhhcccCCc
Confidence 322 3555555552 23333 2233344555555554
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=3.7e-06 Score=80.79 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=70.7
Q ss_pred CcCeEEEecCCCCCeeccc-CccccccCCEEEEecCCCCceE-EcCccCcccccCCCcccccCcceEEEeCceecccCcc
Q 035891 96 NTPSLCLRNCHSLSSLSVF-TLASLRHLEALDMTNCKDLEEM-EIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 173 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l 173 (309)
+|++|++++-..+..-... .-..+|+|++|.+.+- .+..- ....+. +||+|..|||++++++++.++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~----------sFpNL~sLDIS~TnI~nl~GI 191 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCA----------SFPNLRSLDISGTNISNLSGI 191 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhh----------ccCccceeecCCCCccCcHHH
Confidence 5777887774332211101 1235778888888762 22111 112222 688888888888877777777
Q ss_pred CCCCCccEEEEEcCcccc--ccccccccCCcCcccccCCccCCccceeecccccccccc------CCCccCCCCccEEee
Q 035891 174 ILAPNLKHIEVYNCRYLD--EIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI------YPKALPFPHLKELEV 245 (309)
Q Consensus 174 ~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l------~~~~~~~~~L~~L~i 245 (309)
+++++|+.|.+.+-.... ++ ..+..+.+|+.|++++-.....- -.....+|.|+.|+.
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l--------------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDL--------------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred hccccHHHHhccCCCCCchhhH--------------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 788888887776543221 11 24556777888887752211111 011224677777776
Q ss_pred cC
Q 035891 246 NL 247 (309)
Q Consensus 246 ~~ 247 (309)
++
T Consensus 258 Sg 259 (699)
T KOG3665|consen 258 SG 259 (699)
T ss_pred CC
Confidence 54
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=2e-05 Score=75.84 Aligned_cols=137 Identities=19% Similarity=0.165 Sum_probs=80.1
Q ss_pred CCCcEEecCCCcCCCC-Cchhhhc-CCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 5 VNLKCLNLEYTYRIYK-IPGQVIS-NLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~-lp~~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
.+||+|+++|...+.. -|.. ++ -||+|+.|.+.+-.+.. .....-+.++++|..|++++.+...+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k-ig~~LPsL~sL~i~~~~~~~-----------~dF~~lc~sFpNL~sLDIS~TnI~nl~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK-IGTMLPSLRSLVISGRQFDN-----------DDFSQLCASFPNLRSLDISGTNISNLS 189 (699)
T ss_pred HhhhhcCccccchhhccHHHH-HhhhCcccceEEecCceecc-----------hhHHHHhhccCccceeecCCCCccCcH
Confidence 4688888887633332 3444 44 47888888887765541 334455777888888888766666664
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.+..+. +|+.|.+.+.+.........+-++++|+.|+++.-.+...-... ..+......+|.|+.|+.
T Consensus 190 GIS~Lk-------nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii-----~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 190 GISRLK-------NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKII-----EQYLECGMVLPELRFLDC 257 (699)
T ss_pred HHhccc-------cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHH-----HHHHHhcccCccccEEec
Confidence 444432 57777777655443333335567778888888863332221000 000000015777777777
Q ss_pred eCc
Q 035891 163 WGS 165 (309)
Q Consensus 163 ~~c 165 (309)
++.
T Consensus 258 SgT 260 (699)
T KOG3665|consen 258 SGT 260 (699)
T ss_pred CCc
Confidence 766
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=6.6e-06 Score=75.19 Aligned_cols=103 Identities=25% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+.+++|.+|++.+| .++.+... +..+++|++|++++|.+.. +.++..+..|+.|++.++.+..+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N~I~~--------------i~~l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFNKITK--------------LEGLSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred ccccceeeeecccc-chhhcccc-hhhhhcchheecccccccc--------------ccchhhccchhhheeccCcchhc
Confidence 56789999999999 89988874 7889999999999999862 35566777788888887777666
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEec
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTN 129 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~ 129 (309)
..+.. +++|+.+++.++. ...+.. . +..+.+++.+.+.+
T Consensus 156 ~~~~~-------l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 156 SGLES-------LKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred cCCcc-------chhhhcccCCcch-hhhhhhhh-hhhccchHHHhccC
Confidence 65544 2257778877743 333321 1 35667777777776
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.60 E-value=0.00013 Score=70.17 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=77.8
Q ss_pred CCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-hhhh
Q 035891 6 NLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-ALHR 83 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~l~~ 83 (309)
.++.|+|+++ .+. .+|.. +++|++|++|++++|.+. ..++..++.+++|+.|+++.+... .+++
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~------------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIR------------GNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCccc------------CcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 3678999998 665 68887 899999999999999886 567778999999999999877654 3333
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccc-cccCCEEEEecCCCCc
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLAS-LRHLEALDMTNCKDLE 134 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~l~ 134 (309)
... . +++|+.|+++++.....+| ..+.. ..++..+++.++..+.
T Consensus 485 ~l~--~----L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 485 SLG--Q----LTSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred HHh--c----CCCCCEEECcCCcccccCC-hHHhhccccCceEEecCCcccc
Confidence 222 1 4479999999876554555 23332 3456778887754433
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=2.4e-05 Score=66.04 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=87.2
Q ss_pred EEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-hhhhhc
Q 035891 9 CLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-ALHRLL 85 (309)
Q Consensus 9 ~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~l~~~~ 85 (309)
.|.+.++ .+..... .+-...+.++.+|+.+|.+..| ..+..-+++|+.|++|+++.+... .+..++
T Consensus 49 llvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdW----------seI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 49 LLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDW----------SEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred hheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccH----------HHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 4555555 5544322 1224567889999999988866 667777899999999999765543 233332
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeec-ccCccccccCCEEEEecCCCCceEEcCcc-CcccccCCCcccccCcceEEEe
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLS-VFTLASLRHLEALDMTNCKDLEEMEIDYA-GEEVKRIRETHGFFSLHKVSIW 163 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~ 163 (309)
. . ..+|+.|.+.+. .+.-.. ...+..+|.++.|+++. +++..+-.+.. ... --+.+++|+..
T Consensus 118 ~--p----~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~--------~s~~v~tlh~~ 181 (418)
T KOG2982|consen 118 L--P----LKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSD-NSLRQLNLDDNCIED--------WSTEVLTLHQL 181 (418)
T ss_pred c--c----ccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhcc-chhhhhccccccccc--------cchhhhhhhcC
Confidence 1 1 337899988873 222111 12456778888888887 44444433211 100 12345555555
Q ss_pred Cc-e--ecccCcc-CCCCCccEEEEEcCc
Q 035891 164 GS-K--LRHVTWL-ILAPNLKHIEVYNCR 188 (309)
Q Consensus 164 ~c-~--l~~l~~l-~~l~~L~~L~l~~c~ 188 (309)
+| . ....--+ ..+|++..+-+.+|+
T Consensus 182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred CcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 55 1 1111111 235777777777764
No 52
>PLN03150 hypothetical protein; Provisional
Probab=97.48 E-value=0.00026 Score=68.05 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=78.2
Q ss_pred CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-hhhhhcCCcCccccCCCcCeEEEecCCCCC
Q 035891 31 MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-ALHRLLTSPSLQSIFSNTPSLCLRNCHSLS 109 (309)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~ 109 (309)
.++.|++.++.+. ...+..+..+++|+.|+++.+... .++.... . +++|+.|+++++....
T Consensus 419 ~v~~L~L~~n~L~------------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~--~----l~~L~~LdLs~N~lsg 480 (623)
T PLN03150 419 FIDGLGLDNQGLR------------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG--S----ITSLEVLDLSYNSFNG 480 (623)
T ss_pred EEEEEECCCCCcc------------ccCCHHHhCCCCCCEEECCCCcccCcCChHHh--C----CCCCCEEECCCCCCCC
Confidence 4788999998886 667888999999999999876654 3332211 1 4479999999975544
Q ss_pred eecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eeccc
Q 035891 110 SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHV 170 (309)
Q Consensus 110 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l 170 (309)
.+| ..+..+++|+.|+++++.-...++..... .+.++..+++.+| .+-..
T Consensus 481 ~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~----------~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 481 SIP-ESLGQLTSLRILNLNGNSLSGRVPAALGG----------RLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCc-hHHhcCCCCCEEECcCCcccccCChHHhh----------ccccCceEEecCCccccCC
Confidence 565 56788999999999986433455543322 3456778888888 44433
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00026 Score=56.54 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=68.2
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc---eecccCc
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS---KLRHVTW 172 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c---~l~~l~~ 172 (309)
....+++++++ +..+ ..++.++.|..|.+.. +.+..+...... .+|+|..|.+.+| .+.++..
T Consensus 43 ~~d~iDLtdNd-l~~l--~~lp~l~rL~tLll~n-NrIt~I~p~L~~----------~~p~l~~L~LtnNsi~~l~dl~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL--DNLPHLPRLHTLLLNN-NRITRIDPDLDT----------FLPNLKTLILTNNSIQELGDLDP 108 (233)
T ss_pred ccceecccccc-hhhc--ccCCCccccceEEecC-Ccceeeccchhh----------hccccceEEecCcchhhhhhcch
Confidence 45566666633 2222 3566778888888887 778888765553 6888999999988 4445546
Q ss_pred cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccc
Q 035891 173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYA 223 (309)
Q Consensus 173 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 223 (309)
+..+|.|++|.+-+++--..--. . .-.+..+|+|+.|++.+
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~Y-------R---~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNY-------R---LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccCCccceeeecCCchhcccCc-------e---eEEEEecCcceEeehhh
Confidence 77888899988877642221110 0 02346778888888875
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.35 E-value=5.2e-06 Score=77.68 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCcc
Q 035891 94 FSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 173 (309)
Q Consensus 94 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l 173 (309)
++.+++|+++++ .+... ..+..++.|+.|+++. |.+..++.-... .+ .|..|.+.+|.++.+-.+
T Consensus 186 l~ale~LnLshN-k~~~v--~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~----------gc-~L~~L~lrnN~l~tL~gi 250 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKV--DNLRRLPKLKHLDLSY-NCLRHVPQLSMV----------GC-KLQLLNLRNNALTTLRGI 250 (1096)
T ss_pred HHHhhhhccchh-hhhhh--HHHHhccccccccccc-chhccccccchh----------hh-hheeeeecccHHHhhhhH
Confidence 446888888874 33443 2456677888888887 567666643221 23 388888888866666667
Q ss_pred CCCCCccEEEEEcC
Q 035891 174 ILAPNLKHIEVYNC 187 (309)
Q Consensus 174 ~~l~~L~~L~l~~c 187 (309)
.++.+|..|+++++
T Consensus 251 e~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYN 264 (1096)
T ss_pred HhhhhhhccchhHh
Confidence 77888888888765
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.00019 Score=43.01 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 30 KMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
++|++|++++|.+. .++..+++|++|+.|+++++....++.
T Consensus 1 ~~L~~L~l~~N~i~-------------~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-------------DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-------------SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-------------ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999994 455568899999999997666554443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.00057 Score=54.70 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=7.6
Q ss_pred cccCcceEEEeCc
Q 035891 153 GFFSLHKVSIWGS 165 (309)
Q Consensus 153 ~~~~L~~L~l~~c 165 (309)
.+|+|+.|+..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 4566666666544
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.22 E-value=1.2e-05 Score=74.74 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=43.9
Q ss_pred CcCeEEEecCCCCCeecccCcc-ccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eeccc--C
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLA-SLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHV--T 171 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l--~ 171 (309)
+|+.+++..|..+++.....++ .+++|+.|.+..|..+.+.+...... .+++|++|++++| .+.+- .
T Consensus 244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~---------~~~~L~~L~l~~c~~~~d~~l~ 314 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE---------RCPSLRELDLSGCHGLTDSGLE 314 (482)
T ss_pred CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH---------hcCcccEEeeecCccchHHHHH
Confidence 5777777776655554433333 25677777766665544444333221 4666777777777 44321 1
Q ss_pred -ccCCCCCccEEEEEc
Q 035891 172 -WLILAPNLKHIEVYN 186 (309)
Q Consensus 172 -~l~~l~~L~~L~l~~ 186 (309)
...++++|+.|.+..
T Consensus 315 ~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 315 ALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHhCcchhhhhhhh
Confidence 123355555544433
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.06 E-value=3.6e-05 Score=71.47 Aligned_cols=117 Identities=23% Similarity=0.307 Sum_probs=72.0
Q ss_pred CCCCcEEecCCCcCCCC--CchhhhcCCCCCceEEeccc-CCCCccCCccccCCcccchhhhhccCCCceEEEEEec-ch
Q 035891 4 LVNLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKC-GSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS-FA 79 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~-~~ 79 (309)
...|+.|.+.++..+.. +-. +...+++|+.|++++| ..... ...........+++|+.+++.... .+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITL--------SPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCccccccc--------chhHhhhhhhhcCCcCccchhhhhccC
Confidence 46778888888856665 223 3678899999999874 22110 001112234445778888876444 12
Q ss_pred --hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCce
Q 035891 80 --ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEE 135 (309)
Q Consensus 80 --~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~ 135 (309)
.+..+... +++|+.|.+.+|..+++.....+ ..+++|+.|++++|..+.+
T Consensus 258 d~~l~~l~~~------c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 258 DIGLSALASR------CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred chhHHHHHhh------CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 22233222 33799999888887655543333 5678899999999887633
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00039 Score=57.73 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=14.6
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEeccc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKC 40 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 40 (309)
.|++|++.+. .++.+.. +..|++|++|.++.|
T Consensus 44 ~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINV-GLTTLTN--FPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhcc-ceeeccc--CCCcchhhhhcccCC
Confidence 3444444444 3333332 344555555555555
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.72 E-value=2.4e-05 Score=73.40 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=55.6
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS 87 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~ 87 (309)
.+.+.++| .+..+..+ +.-++.||.|++++|++. -...+..+++|++|+++.|....++.+...
T Consensus 167 ~~a~fsyN-~L~~mD~S-Lqll~ale~LnLshNk~~--------------~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~ 230 (1096)
T KOG1859|consen 167 ATASFSYN-RLVLMDES-LQLLPALESLNLSHNKFT--------------KVDNLRRLPKLKHLDLSYNCLRHVPQLSMV 230 (1096)
T ss_pred hhhhcchh-hHHhHHHH-HHHHHHhhhhccchhhhh--------------hhHHHHhcccccccccccchhccccccchh
Confidence 34445555 55555554 556666777777777664 123566667777777766655555544332
Q ss_pred cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEec
Q 035891 88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTN 129 (309)
Q Consensus 88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 129 (309)
.- .|+.|.+.+ +.++.+ ..+.++++|+.|++++
T Consensus 231 gc------~L~~L~lrn-N~l~tL--~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 231 GC------KLQLLNLRN-NALTTL--RGIENLKSLYGLDLSY 263 (1096)
T ss_pred hh------hheeeeecc-cHHHhh--hhHHhhhhhhccchhH
Confidence 11 366666666 444444 3556666677776665
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.00061 Score=57.75 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=42.3
Q ss_pred CCCCcEEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhh-hccCCCceEEEEEec
Q 035891 4 LVNLKCLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL-LGLERLNVLTITLQS 77 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~~L~l~~~~ 77 (309)
.++++.||+.+| .++.-.+ .+..+|+.|++|+++.|... ..++.+ .++.+|+++-+.+.+
T Consensus 70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~-------------s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLS-------------SDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCC-------------CccccCcccccceEEEEEcCCC
Confidence 357788999998 7775332 14678999999999888773 444444 467788888775444
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.37 E-value=0.0012 Score=33.03 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=17.3
Q ss_pred CCcEEecCCCcCCCCCchhhhcCC
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNL 29 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L 29 (309)
+||+|++++| .++.+|.+ +++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT-
T ss_pred CccEEECCCC-cCEeCChh-hcCC
Confidence 5789999999 88888887 6654
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.00094 Score=53.45 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=50.8
Q ss_pred CceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc--CCcCccccCCCcCeEEEecCCCCC
Q 035891 32 LEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL--TSPSLQSIFSNTPSLCLRNCHSLS 109 (309)
Q Consensus 32 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~--~~~~l~~~l~~L~~L~l~~~~~l~ 109 (309)
++.+|.+++.+. ...++.+++++.++.|.+. .+..+..|. ....+ .++|+.|++++|..++
T Consensus 103 IeaVDAsds~I~------------~eGle~L~~l~~i~~l~l~--~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIM------------YEGLEHLRDLRSIKSLSLA--NCKYFDDWCLERLGGL---APSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHH------------HHHHHHHhccchhhhheec--cccchhhHHHHHhccc---ccchheeeccCCCeec
Confidence 566666666665 4556667777777777664 333333221 11111 3367777777777777
Q ss_pred eecccCccccccCCEEEEecCCC
Q 035891 110 SLSVFTLASLRHLEALDMTNCKD 132 (309)
Q Consensus 110 ~~~~~~l~~l~~L~~L~l~~~~~ 132 (309)
+..+..+..+++|+.|.+.+...
T Consensus 166 ~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 166 DGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hhHHHHHHHhhhhHHHHhcCchh
Confidence 77666777777777777776544
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.60 E-value=0.0033 Score=47.38 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
+|...++++| .++++|+.+-.+.+-..+|++.+|.+ ..+|+++..++.|+.+++.++....
T Consensus 54 el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~nei-------------sdvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 54 ELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEI-------------SDVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred eEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhh-------------hhchHHHhhhHHhhhcccccCcccc
Confidence 3344444444 44444444223333444444444444 3445555555555555555554443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.00067 Score=56.99 Aligned_cols=102 Identities=23% Similarity=0.173 Sum_probs=65.8
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
|.+.+.|+.=+| .+.+|.- ..+|+.|++|.++-|+++ .++.+..+++|+.|++..+.+..+.+
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIs--------------sL~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKIS--------------SLAPLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccc--------------cchhHHHHHHHHHHHHHhcccccHHH
Confidence 445667777777 7777764 678888888888888875 33556677778888887777776666
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeec----ccCccccccCCEEE
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLS----VFTLASLRHLEALD 126 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~ 126 (309)
+.-+.+ +++|+.|.|..+.-...-+ ...+..+|+|+.|+
T Consensus 81 L~YLkn----lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEYLKN----LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhc----CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 554444 3357777777643322221 01344566777664
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.15 E-value=0.01 Score=49.48 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=68.3
Q ss_pred cccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--eec-ccC-ccCCCCCccEEEEEcCccccc
Q 035891 117 ASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS--KLR-HVT-WLILAPNLKHIEVYNCRYLDE 192 (309)
Q Consensus 117 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~l~-~l~-~l~~l~~L~~L~l~~c~~l~~ 192 (309)
..+..|+.|++.++ .+.++ ..+. .+|+|++|.++.| ... .++ ....+|+|++|+++++. ++.
T Consensus 40 d~~~~le~ls~~n~-gltt~--~~~P----------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTL--TNFP----------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD 105 (260)
T ss_pred ccccchhhhhhhcc-ceeec--ccCC----------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc
Confidence 35567777776654 22222 1222 6889999999988 222 222 23456999999998864 433
Q ss_pred cccccccCCcCcccccCCccCCccceeeccccccccccCCC----ccCCCCccEEeecCcccCCC
Q 035891 193 IISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK----ALPFPHLKELEVNLCPKLEK 253 (309)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~----~~~~~~L~~L~i~~C~~L~~ 253 (309)
+- +......+++|..|++..|.-.. +-.. ...+|+|++|+-..+..-..
T Consensus 106 ls-----------tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 106 LS-----------TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred cc-----------ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCccc
Confidence 21 01356778889999999985333 3221 22678888888777655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.00091 Score=56.20 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=46.8
Q ss_pred cccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccc
Q 035891 119 LRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEK 198 (309)
Q Consensus 119 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 198 (309)
+.+.+.|++.+| .+.++.+ +. .++.|+.|.++-|++..+..+.+++.|++|+|..+ .+.++--
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~----------kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldE--- 80 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CE----------KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDE--- 80 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HH----------hcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHH---
Confidence 445566666665 4444432 21 46777777777776666656667777777776543 2222210
Q ss_pred cCCcCcccccCCccCCccceeeccccc
Q 035891 199 LGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 199 ~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
..-+.++|+|+.|.|...|
T Consensus 81 --------L~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 81 --------LEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred --------HHHHhcCchhhhHhhccCC
Confidence 0234567777777776644
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.08 E-value=0.014 Score=27.05 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=7.9
Q ss_pred CCcEEecCCCcCCCCCc
Q 035891 6 NLKCLNLEYTYRIYKIP 22 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp 22 (309)
+||+|++++| .++.+|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 5667777776 566554
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.07 E-value=0.19 Score=37.41 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=36.5
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--eecccCcc
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS--KLRHVTWL 173 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~l~~l~~l 173 (309)
+|+.+.+.. .+..+....+..+++|+.+.+.. .+..++...+. ..++++.+.+.++ .+..- .+
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~----------~~~~l~~i~~~~~~~~i~~~-~F 77 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFS----------NCKSLESITFPNNLKSIGDN-AF 77 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTT----------T-TT-EEEEETSTT-EE-TT-TT
T ss_pred CCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeee----------cccccccccccccccccccc-cc
Confidence 466666553 45556555666666777777765 36666655543 5556777777543 22221 24
Q ss_pred CCCCCccEEEEE
Q 035891 174 ILAPNLKHIEVY 185 (309)
Q Consensus 174 ~~l~~L~~L~l~ 185 (309)
...++|+.+.+.
T Consensus 78 ~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 SNCTNLKNIDIP 89 (129)
T ss_dssp TT-TTECEEEET
T ss_pred cccccccccccC
Confidence 456677777764
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.0011 Score=52.98 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=35.5
Q ss_pred cccCcceEEEeCc-eecccC--ccC-CCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891 153 GFFSLHKVSIWGS-KLRHVT--WLI-LAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228 (309)
Q Consensus 153 ~~~~L~~L~l~~c-~l~~l~--~l~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 228 (309)
.++.++.|.+.+| .+.+.. .++ -.|+|+.|+|++|+.+++--. ..+..|++|+.|.|.+++...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhhh
Confidence 4555555555555 443311 111 346666667766666655421 345566666666666665544
Q ss_pred cc
Q 035891 229 SI 230 (309)
Q Consensus 229 ~l 230 (309)
..
T Consensus 191 ~~ 192 (221)
T KOG3864|consen 191 NL 192 (221)
T ss_pred ch
Confidence 43
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.89 E-value=0.028 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.1
Q ss_pred CCCCcEEecCCCcCCCCCchhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVI 26 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i 26 (309)
|.+|++|++.+| .++.+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 567899999998 8999988744
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.89 E-value=0.028 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.1
Q ss_pred CCCCcEEecCCCcCCCCCchhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVI 26 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i 26 (309)
|.+|++|++.+| .++.+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 567899999998 8999988744
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.73 E-value=0.011 Score=49.81 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=80.6
Q ss_pred CCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891 5 VNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA 79 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 79 (309)
..+..+++++| .+.. +.. .|.+-.+|++.++++-.....-.++ ...-..+.+.+..+++|+..+++.+.+.
T Consensus 30 d~~~evdLSGN-tigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~--~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 30 DELVEVDLSGN-TIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDEL--YSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred cceeEEeccCC-cccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHH--HHHHHHHHHHHhcCCcceeeeccccccC
Confidence 44566777777 5543 222 2445556666655543221000000 0001223455667788888888876554
Q ss_pred --hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccC-------------ccccccCCEEEEecCCCCceEEcCccCcc
Q 035891 80 --ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFT-------------LASLRHLEALDMTNCKDLEEMEIDYAGEE 144 (309)
Q Consensus 80 --~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~-------------l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 144 (309)
..+.+.....- .++|++|.+++| .+..+.... .+.-|.|+...+.. +.++.-+......
T Consensus 106 ~~~~e~L~d~is~---~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~- 179 (388)
T COG5238 106 SEFPEELGDLISS---STDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAA- 179 (388)
T ss_pred cccchHHHHHHhc---CCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHH-
Confidence 22223222111 237888888885 333332111 12345666665554 3443332211100
Q ss_pred cccCCCcccccCcceEEEeCcee--cccC-----ccCCCCCccEEEEEcCc
Q 035891 145 VKRIRETHGFFSLHKVSIWGSKL--RHVT-----WLILAPNLKHIEVYNCR 188 (309)
Q Consensus 145 ~~~~~~~~~~~~L~~L~l~~c~l--~~l~-----~l~~l~~L~~L~l~~c~ 188 (309)
....-.+|+.+.|..|.+ +.+. .+..+.+|+.|+|.++.
T Consensus 180 -----~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 180 -----LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred -----HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 000124777777776622 2111 24456777777777664
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.43 E-value=0.37 Score=35.78 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=58.1
Q ss_pred cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCcccc
Q 035891 114 FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLD 191 (309)
Q Consensus 114 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~ 191 (309)
..+..+.+|+.+.+.. .++.++...+. .+.+|+.+.+.+. +..++ .+...++|+.+.+.+ .+.
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~----------~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~ 70 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAFS----------NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLK 70 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTTT----------T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhcc----------ccccccccccccc-ccccceeeeecccccccccccc--ccc
Confidence 4567777899888874 68888877665 6778999998875 33333 356677899999954 344
Q ss_pred ccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCC
Q 035891 192 EIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLP 255 (309)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp 255 (309)
.+.. ..+..+++|+.+.+.. .++.+....+.-..|+.+.+.. .++.++
T Consensus 71 ~i~~------------~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~--~~~~i~ 118 (129)
T PF13306_consen 71 SIGD------------NAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS--NITKIE 118 (129)
T ss_dssp EE-T------------TTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT--B-SS--
T ss_pred cccc------------ccccccccccccccCc--cccEEchhhhcCCCceEEEECC--CccEEC
Confidence 3432 3456678888888864 3666666555333777776653 444443
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.97 E-value=0.0094 Score=45.00 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=6.2
Q ss_pred cccCcceEEEeCc
Q 035891 153 GFFSLHKVSIWGS 165 (309)
Q Consensus 153 ~~~~L~~L~l~~c 165 (309)
.++.|+.|+++.|
T Consensus 98 am~aLr~lNl~~N 110 (177)
T KOG4579|consen 98 AMPALRSLNLRFN 110 (177)
T ss_pred hhHHhhhcccccC
Confidence 3444444444444
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.96 E-value=0.14 Score=43.26 Aligned_cols=147 Identities=11% Similarity=0.035 Sum_probs=76.6
Q ss_pred hcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh---------hhhhcCCcCccccCCC
Q 035891 26 ISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA---------LHRLLTSPSLQSIFSN 96 (309)
Q Consensus 26 i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~---------l~~~~~~~~l~~~l~~ 96 (309)
+-+|++||..++++|.+..- -.+.+..-+.+-..|+.|.+.+++... +..++...+... -|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~--------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~-kp~ 158 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSE--------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAAD-KPK 158 (388)
T ss_pred HhcCCcceeeeccccccCcc--------cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhcc-CCC
Confidence 56788888888888877511 012222335566778888887766442 122222222222 345
Q ss_pred cCeEEEecCCCCCeeccc----CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-
Q 035891 97 TPSLCLRNCHSLSSLSVF----TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT- 171 (309)
Q Consensus 97 L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~- 171 (309)
|+.....+ +.+.+.+.. .+..-.+|+.+.|.. +.++.-+.......+ ...+.+|+.|++..|-++...
T Consensus 159 Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~g-----l~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 159 LEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLG-----LFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred ceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHH-----HHHhCcceeeeccccchhhhhH
Confidence 77666555 444444311 233335778887776 455443322110000 004678888888877322211
Q ss_pred -----ccCCCCCccEEEEEcCc
Q 035891 172 -----WLILAPNLKHIEVYNCR 188 (309)
Q Consensus 172 -----~l~~l~~L~~L~l~~c~ 188 (309)
.+..-+.|..|.+.+|-
T Consensus 232 ~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHhcccchhhhccccchh
Confidence 11222557888888873
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.04 E-value=0.26 Score=25.47 Aligned_cols=17 Identities=29% Similarity=0.763 Sum_probs=12.8
Q ss_pred CCCccEEeecCcccCCC
Q 035891 237 FPHLKELEVNLCPKLEK 253 (309)
Q Consensus 237 ~~~L~~L~i~~C~~L~~ 253 (309)
+++|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888887753
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.97 E-value=0.44 Score=24.01 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=6.1
Q ss_pred CCCceEEecccCC
Q 035891 30 KMLEALRMFKCGS 42 (309)
Q Consensus 30 ~~L~~L~l~~~~~ 42 (309)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4555555555554
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.91 E-value=2.2 Score=22.18 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=8.1
Q ss_pred CCCcEEecCCCcCCCC
Q 035891 5 VNLKCLNLEYTYRIYK 20 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~ 20 (309)
++|+.|+++.| .|+.
T Consensus 2 ~~L~~L~L~~N-kI~~ 16 (26)
T smart00365 2 TNLEELDLSQN-KIKK 16 (26)
T ss_pred CccCEEECCCC-ccce
Confidence 45555666655 4443
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.27 E-value=1.9 Score=22.40 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.3
Q ss_pred CCCcEEecCCCcCCCCCch
Q 035891 5 VNLKCLNLEYTYRIYKIPG 23 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~ 23 (309)
.+|++|++++| .++.+|+
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 36788888888 8888886
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.94 E-value=7 Score=20.45 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=5.2
Q ss_pred CCcEEecCCC
Q 035891 6 NLKCLNLEYT 15 (309)
Q Consensus 6 ~Lr~L~l~~~ 15 (309)
+|++|+|++|
T Consensus 3 ~L~~LdL~~N 12 (28)
T smart00368 3 SLRELDLSNN 12 (28)
T ss_pred ccCEEECCCC
Confidence 4555555555
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.25 E-value=11 Score=35.46 Aligned_cols=81 Identities=22% Similarity=0.221 Sum_probs=50.6
Q ss_pred cccCcceEEEeCceecccCcc----CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891 153 GFFSLHKVSIWGSKLRHVTWL----ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228 (309)
Q Consensus 153 ~~~~L~~L~l~~c~l~~l~~l----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 228 (309)
.+|.+..+.+++|++..+..+ +..|+|..|+|+++....+--. + ..--+...|++|.+.+.|-.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-------e----l~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-------E----LDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-------h----hhhhcCCCHHHeeecCCcccc
Confidence 678888999998855555422 3469999999998722211100 0 112345678888888876555
Q ss_pred ccCCC-------ccCCCCccEEe
Q 035891 229 SIYPK-------ALPFPHLKELE 244 (309)
Q Consensus 229 ~l~~~-------~~~~~~L~~L~ 244 (309)
.+... ...||+|..|+
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred chhhhHHHHHHHHHhcchheeec
Confidence 55431 12688888776
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=37.04 E-value=0.84 Score=37.92 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=20.2
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCC
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS 42 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 42 (309)
...+.||++.+ .+-.+... +..++.|..|+++.+.+
T Consensus 42 kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~sknq~ 77 (326)
T KOG0473|consen 42 KRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKNQI 77 (326)
T ss_pred ceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHhhH
Confidence 33455666665 55555554 55566666666665555
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.48 E-value=42 Score=38.10 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=27.8
Q ss_pred ecCCCcCCCCCchhhhcCCCCCceEEecccCC
Q 035891 11 NLEYTYRIYKIPGQVISNLKMLEALRMFKCGS 42 (309)
Q Consensus 11 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 42 (309)
||++| .|+.||.+.|..|.+|++|+|.+|-.
T Consensus 1 DLSnN-~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNN-KISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCC-cCCccChHHhccCCCceEEEeeCCcc
Confidence 57888 99999999999999999999998654
No 85
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.81 E-value=31 Score=17.88 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=10.1
Q ss_pred hhcCCCCCceEEec
Q 035891 25 VISNLKMLEALRMF 38 (309)
Q Consensus 25 ~i~~L~~L~~L~l~ 38 (309)
+|..+++|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 46677888888764
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.62 E-value=52 Score=31.14 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=45.4
Q ss_pred CCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe--cchhhhhhcCCcCccccCCCcCeEEEecC
Q 035891 28 NLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ--SFAALHRLLTSPSLQSIFSNTPSLCLRNC 105 (309)
Q Consensus 28 ~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~--~~~~l~~~~~~~~l~~~l~~L~~L~l~~~ 105 (309)
+.+.++-+.+++|+...+ +.+-.--..-++|++|+++.+ ......++.+...+ .|++|.+.++
T Consensus 216 n~p~i~sl~lsnNrL~~L----------d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-----~Leel~l~GN 280 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL----------DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-----PLEELVLEGN 280 (585)
T ss_pred CCcceeeeecccchhhch----------hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-----CHHHeeecCC
Confidence 455566666776666421 111111222477888888766 33333444443322 3888888887
Q ss_pred CCCCeeccc------CccccccCCEEE
Q 035891 106 HSLSSLSVF------TLASLRHLEALD 126 (309)
Q Consensus 106 ~~l~~~~~~------~l~~l~~L~~L~ 126 (309)
+-++.+... .-..+|+|..|+
T Consensus 281 Plc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 281 PLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccccchhhhHHHHHHHHHhcchheeec
Confidence 776666432 113466666654
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=20.45 E-value=11 Score=31.52 Aligned_cols=59 Identities=12% Similarity=-0.029 Sum_probs=43.4
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS 77 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~ 77 (309)
++.|..|+++.+ .+..+|.+ ++.+..++.++...|.. ...|...+.+++++.++...+.
T Consensus 64 ~t~~~rl~~skn-q~~~~~~d-~~q~~e~~~~~~~~n~~-------------~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSKN-QIKFLPKD-AKQQRETVNAASHKNNH-------------SQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccHh-hHhhChhh-HHHHHHHHHHHhhccch-------------hhCCccccccCCcchhhhccCc
Confidence 445566788877 78888888 78888888888877777 4566667777777777776544
Done!