Query 035891
Match_columns 309
No_of_seqs 201 out of 2097
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.5E-23 8.5E-28 182.7 16.6 229 4-279 80-317 (328)
2 4fcg_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 164.1 13.5 203 2-247 101-310 (328)
3 3zyj_A Leucine-rich repeat-con 99.8 1.5E-19 5.1E-24 164.9 18.7 221 5-269 64-285 (440)
4 3zyi_A Leucine-rich repeat-con 99.8 1.2E-19 4E-24 166.1 17.9 221 5-269 75-296 (452)
5 2id5_A Lingo-1, leucine rich r 99.8 1.7E-18 5.8E-23 159.4 19.8 224 1-256 52-313 (477)
6 3zyj_A Leucine-rich repeat-con 99.8 3.5E-19 1.2E-23 162.4 14.9 204 1-249 84-290 (440)
7 3zyi_A Leucine-rich repeat-con 99.8 5.4E-19 1.8E-23 161.7 14.3 204 1-249 95-301 (452)
8 2z80_A TOLL-like receptor 2, v 99.8 5E-19 1.7E-23 156.7 11.9 166 6-187 53-232 (353)
9 2id5_A Lingo-1, leucine rich r 99.8 3E-18 1E-22 157.7 16.5 207 5-255 32-240 (477)
10 3o6n_A APL1; leucine-rich repe 99.8 9.9E-19 3.4E-23 156.9 12.7 164 4-188 68-259 (390)
11 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-18 7.6E-23 148.0 12.9 200 5-248 32-235 (285)
12 2z66_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 148.0 13.9 222 5-269 28-254 (306)
13 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-18 5.4E-23 151.3 11.5 199 3-258 32-233 (317)
14 2xwt_C Thyrotropin receptor; s 99.8 6E-18 2E-22 141.6 14.4 200 6-251 32-239 (239)
15 1xku_A Decorin; proteoglycan, 99.8 9.6E-18 3.3E-22 147.1 15.5 212 5-256 52-280 (330)
16 1p9a_G Platelet glycoprotein I 99.8 5.2E-18 1.8E-22 146.2 13.0 198 2-249 7-206 (290)
17 2z80_A TOLL-like receptor 2, v 99.7 1.2E-17 4E-22 147.9 13.7 226 7-269 33-307 (353)
18 3oja_B Anopheles plasmodium-re 99.7 5.2E-18 1.8E-22 160.5 12.1 229 3-255 73-340 (597)
19 3o6n_A APL1; leucine-rich repe 99.7 1.6E-17 5.5E-22 149.0 14.7 231 1-269 89-345 (390)
20 3v47_A TOLL-like receptor 5B a 99.7 3E-17 1E-21 150.0 16.5 100 154-269 298-401 (455)
21 3v47_A TOLL-like receptor 5B a 99.7 2.9E-17 9.8E-22 150.2 15.7 98 156-269 276-377 (455)
22 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-18 3.6E-23 152.2 5.5 209 1-257 72-287 (313)
23 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.7E-22 154.4 12.3 206 4-250 33-249 (487)
24 1ogq_A PGIP-2, polygalacturona 99.7 5.9E-18 2E-22 147.4 10.0 215 5-268 50-273 (313)
25 1h6u_A Internalin H; cell adhe 99.7 1.2E-17 4.1E-22 145.1 11.7 196 3-256 39-234 (308)
26 2o6q_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 139.1 14.7 197 6-249 17-216 (270)
27 2z66_A Variable lymphocyte rec 99.7 1E-17 3.5E-22 145.3 11.2 204 1-249 48-259 (306)
28 1xku_A Decorin; proteoglycan, 99.7 3.3E-17 1.1E-21 143.6 14.6 214 1-249 72-304 (330)
29 2ft3_A Biglycan; proteoglycan, 99.7 2E-17 6.9E-22 145.2 13.1 212 5-256 54-281 (332)
30 3t6q_A CD180 antigen; protein- 99.7 1E-16 3.5E-21 151.7 17.7 156 2-188 275-436 (606)
31 4fmz_A Internalin; leucine ric 99.7 4.7E-17 1.6E-21 143.5 13.3 205 1-248 84-297 (347)
32 3oja_B Anopheles plasmodium-re 99.7 4.9E-17 1.7E-21 153.8 14.0 216 1-249 95-356 (597)
33 4fmz_A Internalin; leucine ric 99.7 5.1E-17 1.7E-21 143.3 12.4 198 1-254 128-326 (347)
34 2z81_A CD282 antigen, TOLL-lik 99.7 1.1E-16 3.6E-21 149.8 15.1 42 1-43 46-87 (549)
35 3t6q_A CD180 antigen; protein- 99.7 1.6E-16 5.3E-21 150.5 16.2 64 1-77 53-116 (606)
36 1o6v_A Internalin A; bacterial 99.7 2.6E-16 9E-21 144.4 17.0 230 2-254 65-324 (466)
37 4eco_A Uncharacterized protein 99.7 2.8E-17 9.4E-22 156.6 9.3 224 3-259 247-508 (636)
38 2ft3_A Biglycan; proteoglycan, 99.7 6.2E-17 2.1E-21 142.0 10.8 216 1-251 74-307 (332)
39 3vq2_A TLR4, TOLL-like recepto 99.7 4.7E-17 1.6E-21 154.0 10.3 222 3-269 326-551 (606)
40 2z62_A TOLL-like receptor 4, v 99.7 9.4E-17 3.2E-21 137.2 10.7 198 6-248 29-234 (276)
41 4ay9_X Follicle-stimulating ho 99.7 8E-16 2.7E-20 136.0 17.0 209 5-256 30-241 (350)
42 1ozn_A Reticulon 4 receptor; N 99.7 4.3E-16 1.5E-20 133.7 14.6 202 8-256 14-218 (285)
43 2xwt_C Thyrotropin receptor; s 99.7 2.3E-16 7.7E-21 131.9 12.4 178 1-226 51-238 (239)
44 2z7x_B TOLL-like receptor 1, v 99.7 8.3E-16 2.8E-20 142.9 17.5 114 153-269 346-474 (520)
45 4ecn_A Leucine-rich repeat pro 99.7 1.9E-16 6.5E-21 154.6 13.7 242 2-269 545-833 (876)
46 4eco_A Uncharacterized protein 99.7 5.9E-17 2E-21 154.3 9.9 226 1-258 202-476 (636)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.5E-15 5.2E-20 142.5 19.2 114 153-269 375-503 (562)
48 3rgz_A Protein brassinosteroid 99.7 2.2E-16 7.6E-21 153.5 13.6 38 4-43 393-431 (768)
49 1o6v_A Internalin A; bacterial 99.7 6.1E-16 2.1E-20 142.0 15.7 146 2-187 174-319 (466)
50 2o6q_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 133.2 13.1 178 5-225 37-216 (270)
51 3vq2_A TLR4, TOLL-like recepto 99.7 1.5E-16 5E-21 150.7 11.5 195 3-248 305-507 (606)
52 3bz5_A Internalin-J, INLJ; leu 99.7 8.4E-16 2.9E-20 140.6 16.0 200 2-255 39-249 (457)
53 3rfs_A Internalin B, repeat mo 99.7 1.7E-16 5.9E-21 135.3 9.8 204 3-260 39-244 (272)
54 3rgz_A Protein brassinosteroid 99.7 2.3E-16 7.9E-21 153.4 11.8 234 2-257 415-723 (768)
55 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-15 6.5E-20 148.4 18.3 45 1-45 44-88 (844)
56 4ecn_A Leucine-rich repeat pro 99.7 3.7E-16 1.3E-20 152.6 12.4 232 3-269 489-759 (876)
57 1wwl_A Monocyte differentiatio 99.6 2.2E-16 7.6E-21 137.3 7.8 218 7-269 65-302 (312)
58 3rfs_A Internalin B, repeat mo 99.6 4.3E-16 1.5E-20 132.9 8.8 194 8-251 22-218 (272)
59 3bz5_A Internalin-J, INLJ; leu 99.6 1.3E-15 4.5E-20 139.3 12.7 166 2-188 61-244 (457)
60 1wwl_A Monocyte differentiatio 99.6 3.4E-16 1.2E-20 136.2 8.2 208 5-257 43-271 (312)
61 3j0a_A TOLL-like receptor 5; m 99.6 4.2E-15 1.4E-19 145.9 16.3 38 4-42 23-60 (844)
62 2z81_A CD282 antigen, TOLL-lik 99.6 2.1E-15 7E-20 141.1 13.0 194 5-249 310-508 (549)
63 1ziw_A TOLL-like receptor 3; i 99.6 9.6E-16 3.3E-20 147.0 10.8 207 5-256 381-601 (680)
64 2z62_A TOLL-like receptor 4, v 99.6 1.8E-15 6.2E-20 129.1 11.1 182 1-225 48-235 (276)
65 2ast_B S-phase kinase-associat 99.6 1.2E-16 4E-21 140.3 3.6 201 5-248 70-282 (336)
66 1h6u_A Internalin H; cell adhe 99.6 1.6E-15 5.6E-20 131.6 10.7 175 2-232 60-234 (308)
67 1ziw_A TOLL-like receptor 3; i 99.6 7.4E-15 2.5E-19 140.9 16.3 44 2-46 70-113 (680)
68 2z63_A TOLL-like receptor 4, v 99.6 2.7E-15 9.2E-20 140.8 13.0 116 2-138 49-166 (570)
69 4ay9_X Follicle-stimulating ho 99.6 7.4E-15 2.5E-19 129.8 14.3 200 1-247 50-255 (350)
70 3o53_A Protein LRIM1, AGAP0063 99.6 8E-16 2.7E-20 134.1 7.9 198 6-259 11-211 (317)
71 1h6t_A Internalin B; cell adhe 99.6 2.6E-15 9.1E-20 129.3 10.8 172 3-230 44-215 (291)
72 1p9a_G Platelet glycoprotein I 99.6 3.3E-15 1.1E-19 128.6 11.4 174 5-225 31-206 (290)
73 2z63_A TOLL-like receptor 4, v 99.6 6.2E-15 2.1E-19 138.3 13.4 226 2-269 279-524 (570)
74 2z7x_B TOLL-like receptor 1, v 99.6 4.3E-14 1.5E-18 131.3 17.2 103 5-129 21-124 (520)
75 3m19_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 123.0 11.6 173 6-224 15-189 (251)
76 1jl5_A Outer protein YOPM; leu 99.6 5.7E-14 1.9E-18 128.4 15.5 116 5-136 131-252 (454)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.8E-14 2.3E-18 131.3 16.4 103 5-129 52-155 (562)
78 4glp_A Monocyte differentiatio 99.6 5E-15 1.7E-19 128.6 7.6 202 7-256 66-289 (310)
79 2ast_B S-phase kinase-associat 99.6 7.5E-16 2.6E-20 135.1 2.4 204 2-254 90-308 (336)
80 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.4E-19 136.9 10.5 173 3-231 41-213 (605)
81 4ezg_A Putative uncharacterize 99.5 7.6E-15 2.6E-19 119.0 7.2 36 4-42 43-78 (197)
82 1jl5_A Outer protein YOPM; leu 99.5 1.7E-15 6E-20 138.4 3.7 192 3-256 9-232 (454)
83 3g06_A SSPH2 (leucine-rich rep 99.5 5.7E-14 1.9E-18 132.7 13.7 35 5-44 61-95 (622)
84 3m19_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 119.1 10.6 155 5-189 35-191 (251)
85 3g06_A SSPH2 (leucine-rich rep 99.5 2.6E-13 9E-18 128.2 15.2 54 6-79 41-94 (622)
86 4glp_A Monocyte differentiatio 99.5 3.7E-14 1.3E-18 123.1 7.7 202 4-249 90-305 (310)
87 3cvr_A Invasion plasmid antige 99.5 1.2E-13 4.3E-18 129.0 11.6 183 6-250 60-242 (571)
88 2ca6_A RAN GTPase-activating p 99.5 4E-15 1.4E-19 133.2 1.2 218 2-249 57-314 (386)
89 1h6t_A Internalin B; cell adhe 99.5 1.2E-13 4.1E-18 118.9 10.4 148 2-189 65-212 (291)
90 1dce_A Protein (RAB geranylger 99.5 4.6E-16 1.6E-20 145.8 -6.6 212 2-244 346-566 (567)
91 1xeu_A Internalin C; cellular 99.5 9.5E-14 3.2E-18 117.7 8.1 168 6-230 20-187 (263)
92 3oja_A Leucine-rich immune mol 99.5 1.4E-13 4.8E-18 126.9 9.7 206 19-269 20-243 (487)
93 1m9s_A Internalin B; cell inva 99.4 1.9E-13 6.5E-18 128.9 9.6 151 1-191 61-211 (605)
94 2o6s_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 109.9 10.0 147 8-187 10-158 (208)
95 4ezg_A Putative uncharacterize 99.4 2.9E-13 9.9E-18 109.6 9.1 149 63-248 41-191 (197)
96 2o6s_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 109.6 9.1 156 4-194 27-182 (208)
97 4g8a_A TOLL-like receptor 4; l 99.4 7.6E-13 2.6E-17 125.3 11.8 222 3-269 347-573 (635)
98 1xeu_A Internalin C; cellular 99.4 1.2E-13 4.1E-18 117.1 4.2 145 3-188 39-183 (263)
99 4g8a_A TOLL-like receptor 4; l 99.4 2.4E-12 8.2E-17 121.9 13.3 203 2-248 368-577 (635)
100 2ca6_A RAN GTPase-activating p 99.3 3E-14 1E-18 127.4 -2.8 214 3-253 30-288 (386)
101 3e6j_A Variable lymphocyte rec 99.3 3.2E-12 1.1E-16 106.0 9.6 147 7-187 21-169 (229)
102 2v9t_B SLIT homolog 2 protein 99.3 4.3E-12 1.5E-16 104.6 9.9 147 8-187 14-162 (220)
103 2xot_A Amphoterin-induced prot 99.3 3.1E-12 1.1E-16 113.4 9.4 170 8-223 21-198 (361)
104 3goz_A Leucine-rich repeat-con 99.3 1.1E-13 3.9E-18 122.7 -0.4 161 4-188 21-207 (362)
105 2xot_A Amphoterin-induced prot 99.3 1.7E-12 5.8E-17 115.1 6.7 157 5-188 39-200 (361)
106 2v9t_B SLIT homolog 2 protein 99.3 5E-12 1.7E-16 104.1 8.4 133 5-167 32-164 (220)
107 3goz_A Leucine-rich repeat-con 99.3 1E-13 3.5E-18 123.0 -2.9 218 3-249 48-295 (362)
108 1z7x_W Ribonuclease inhibitor; 99.3 5.8E-14 2E-18 128.3 -4.8 224 4-248 141-408 (461)
109 2v70_A SLIT-2, SLIT homolog 2 99.3 1.8E-11 6.1E-16 100.8 9.4 148 7-187 13-163 (220)
110 3ogk_B Coronatine-insensitive 99.2 6.6E-12 2.3E-16 118.2 7.1 215 2-253 267-527 (592)
111 3e6j_A Variable lymphocyte rec 99.2 2.1E-11 7.2E-16 101.0 9.2 132 5-167 40-171 (229)
112 1z7x_W Ribonuclease inhibitor; 99.2 2.3E-13 7.8E-18 124.4 -3.3 121 58-187 105-237 (461)
113 3cvr_A Invasion plasmid antige 99.2 2.6E-11 9.1E-16 113.3 10.2 155 5-225 80-241 (571)
114 2ell_A Acidic leucine-rich nuc 99.2 9.6E-12 3.3E-16 97.8 4.4 85 96-193 72-162 (168)
115 2v70_A SLIT-2, SLIT homolog 2 99.2 4.3E-11 1.5E-15 98.5 8.1 134 5-168 32-166 (220)
116 2ell_A Acidic leucine-rich nuc 99.2 1.4E-10 4.9E-15 91.0 9.8 134 96-257 25-165 (168)
117 3sb4_A Hypothetical leucine ri 99.2 1.7E-10 5.9E-15 100.7 11.3 86 154-256 225-314 (329)
118 2p1m_B Transport inhibitor res 99.1 3.7E-12 1.3E-16 119.9 -0.7 158 3-187 64-245 (594)
119 2p1m_B Transport inhibitor res 99.1 5.6E-12 1.9E-16 118.7 0.0 135 96-250 373-518 (594)
120 3ogk_B Coronatine-insensitive 99.1 5.3E-12 1.8E-16 118.9 -0.5 57 3-74 190-251 (592)
121 2je0_A Acidic leucine-rich nuc 99.1 3.2E-11 1.1E-15 92.8 2.1 59 3-77 15-75 (149)
122 1a9n_A U2A', U2A'; complex (nu 99.0 1.5E-10 5E-15 91.8 5.3 16 27-42 16-31 (176)
123 2wfh_A SLIT homolog 2 protein 99.0 6.8E-10 2.3E-14 89.4 8.6 122 8-187 13-136 (193)
124 1w8a_A SLIT protein; signaling 99.0 1.1E-09 3.8E-14 88.0 9.0 125 7-188 10-137 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.0 9.4E-10 3.2E-14 87.1 6.9 124 96-248 20-150 (176)
126 2o6r_A Variable lymphocyte rec 98.9 3E-09 1E-13 84.2 8.7 125 7-188 9-135 (177)
127 2je0_A Acidic leucine-rich nuc 98.9 5.8E-10 2E-14 85.7 4.1 108 1-128 38-148 (149)
128 2wfh_A SLIT homolog 2 protein 98.9 4.3E-09 1.5E-13 84.6 8.3 107 5-166 31-137 (193)
129 4b8c_D Glucose-repressible alc 98.9 7.7E-10 2.6E-14 106.7 3.4 111 1-135 220-330 (727)
130 1dce_A Protein (RAB geranylger 98.9 3.2E-09 1.1E-13 99.4 7.2 119 6-183 442-566 (567)
131 4fdw_A Leucine rich hypothetic 98.8 1.7E-07 5.7E-12 84.0 17.7 79 153-248 269-355 (401)
132 2o6r_A Variable lymphocyte rec 98.8 9.1E-09 3.1E-13 81.3 8.0 109 4-166 27-135 (177)
133 1ds9_A Outer arm dynein; leuci 98.8 2.3E-10 7.7E-15 92.5 -1.8 48 18-80 37-84 (198)
134 3sb4_A Hypothetical leucine ri 98.8 1.4E-08 4.8E-13 88.6 8.9 205 4-245 100-328 (329)
135 1w8a_A SLIT protein; signaling 98.8 1.2E-08 4E-13 82.0 7.2 108 6-167 30-138 (192)
136 4fdw_A Leucine rich hypothetic 98.8 3E-07 1E-11 82.3 16.7 189 6-233 158-363 (401)
137 1ds9_A Outer arm dynein; leuci 98.8 1.5E-10 5.2E-15 93.5 -4.6 80 2-104 45-124 (198)
138 4b8c_D Glucose-repressible alc 98.7 6.5E-09 2.2E-13 100.2 5.7 101 96-224 225-326 (727)
139 3g39_A Variable lymphocyte rec 98.6 7.4E-08 2.5E-12 75.7 7.0 105 6-167 10-114 (170)
140 2r9u_A Variable lymphocyte rec 98.6 8.3E-08 2.8E-12 75.7 7.1 105 7-168 14-118 (174)
141 3e4g_A ATP synthase subunit S, 98.6 2.1E-08 7.2E-13 78.6 3.2 90 96-192 62-154 (176)
142 3g39_A Variable lymphocyte rec 98.5 2.7E-07 9.3E-12 72.4 8.1 81 154-248 29-112 (170)
143 2r9u_A Variable lymphocyte rec 98.5 3.9E-07 1.3E-11 71.8 8.3 81 154-248 32-115 (174)
144 3e4g_A ATP synthase subunit S, 98.5 1.6E-07 5.5E-12 73.6 5.4 91 30-135 61-154 (176)
145 3un9_A NLR family member X1; l 98.5 3.2E-09 1.1E-13 94.2 -5.1 38 5-43 72-114 (372)
146 2ifg_A High affinity nerve gro 98.3 9.9E-07 3.4E-11 77.2 6.2 64 2-78 28-92 (347)
147 2ifg_A High affinity nerve gro 98.2 3E-06 1E-10 74.1 8.1 83 94-188 30-114 (347)
148 2ra8_A Uncharacterized protein 98.1 8.6E-07 2.9E-11 78.2 2.8 131 94-248 171-317 (362)
149 4fs7_A Uncharacterized protein 98.1 8.4E-05 2.9E-09 66.2 14.9 120 96-246 231-351 (394)
150 3un9_A NLR family member X1; l 98.0 1.1E-07 3.8E-12 84.3 -5.2 14 30-43 72-85 (372)
151 2ra8_A Uncharacterized protein 97.8 1E-05 3.5E-10 71.2 4.4 156 3-188 137-318 (362)
152 4gt6_A Cell surface protein; l 97.6 0.0014 4.9E-08 58.1 14.1 38 1-38 83-122 (394)
153 4gt6_A Cell surface protein; l 97.5 0.002 6.8E-08 57.1 13.8 34 6-41 65-98 (394)
154 4fs7_A Uncharacterized protein 97.5 0.0025 8.4E-08 56.6 14.3 204 1-246 158-374 (394)
155 4h09_A Hypothetical leucine ri 97.4 0.02 7E-07 50.1 18.9 33 5-39 46-78 (379)
156 1io0_A Tropomodulin; LRR prote 97.3 6.7E-05 2.3E-09 59.4 1.2 122 26-166 32-162 (185)
157 3rw6_A Nuclear RNA export fact 97.0 5.6E-05 1.9E-09 63.4 -1.3 85 27-126 167-257 (267)
158 4h09_A Hypothetical leucine ri 97.0 0.0096 3.3E-07 52.3 12.8 120 96-245 218-340 (379)
159 3rw6_A Nuclear RNA export fact 96.8 0.00085 2.9E-08 56.2 4.1 64 3-79 168-233 (267)
160 1io0_A Tropomodulin; LRR prote 96.3 0.00068 2.3E-08 53.5 0.2 116 2-130 33-161 (185)
161 3rfe_A Platelet glycoprotein I 95.6 0.011 3.9E-07 43.5 4.0 53 9-77 12-66 (130)
162 3rfe_A Platelet glycoprotein I 91.5 0.18 6E-06 37.0 3.9 37 6-43 32-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 86.8 0.58 2E-05 36.9 3.9 66 5-79 41-111 (197)
164 1pgv_A TMD-1, tropomodulin TMD 67.7 3 0.0001 32.8 2.5 61 4-74 69-134 (197)
165 2lz0_A Uncharacterized protein 59.2 11 0.00036 25.9 3.8 47 107-165 7-53 (100)
166 2lz0_A Uncharacterized protein 48.7 15 0.00051 25.1 3.2 23 17-39 7-29 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.5e-23 Score=182.69 Aligned_cols=229 Identities=20% Similarity=0.246 Sum_probs=186.9
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
..++++|+++++ .++.+|.. ++++++|++|++++|.+. .++..++.+++|+.|+++.+....++.
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n~l~-------------~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAAGLM-------------ELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESSCCC-------------CCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred ccceeEEEccCC-CchhcChh-hhhCCCCCEEECCCCCcc-------------chhHHHhccCCCCEEECCCCccccCcH
Confidence 478999999999 99999998 889999999999999984 556778899999999999877665543
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeeccc--------CccccccCCEEEEecCCCCceEEcCccCcccccCCCccccc
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF--------TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFF 155 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 155 (309)
... . +++|+.|++++|+....++.. .+..+++|+.|++++ +.+..++..+. .++
T Consensus 145 ~l~--~----l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~l~-----------~l~ 206 (328)
T 4fcg_A 145 SIA--S----LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIA-----------NLQ 206 (328)
T ss_dssp GGG--G----CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGGGG-----------GCT
T ss_pred HHh--c----CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHhhc-----------CCC
Confidence 211 2 457999999999888877632 134589999999999 46777765443 789
Q ss_pred CcceEEEeCceecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc
Q 035891 156 SLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA 234 (309)
Q Consensus 156 ~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~ 234 (309)
+|+.|++++|++..++ .++.+++|++|++++|...+.++ ..++.+++|++|++++|+.++.++...
T Consensus 207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP-------------PIFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC-------------CCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH-------------HHhcCCCCCCEEECCCCCchhhcchhh
Confidence 9999999999777776 57789999999999998777765 567889999999999998899999888
Q ss_pred cCCCCccEEeecCcccCCCCCCCCCCCCCcceEEEcchhccccce
Q 035891 235 LPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQ 279 (309)
Q Consensus 235 ~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~~~~~l~ 279 (309)
..+++|+.|++++|+.+..+|..+..+ ..++.+.........+.
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLD 317 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC--
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHh
Confidence 899999999999999999999988877 66666665555544443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.1e-20 Score=164.05 Aligned_cols=203 Identities=22% Similarity=0.262 Sum_probs=164.0
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-h
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-A 80 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~ 80 (309)
+++.+|++|++++| .+..+|.. ++++++|++|++++|.+. .++..++.+++|+.|+++.+... .
T Consensus 101 ~~l~~L~~L~L~~n-~l~~lp~~-~~~l~~L~~L~Ls~n~l~-------------~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 101 FRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARNPLR-------------ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp GGGTTCSEEEEESS-CCCCCCSC-GGGGTTCSEEEEESCCCC-------------CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred hhCCCCCEEECCCC-CccchhHH-HhccCCCCEEECCCCccc-------------cCcHHHhcCcCCCEEECCCCCCccc
Confidence 56889999999999 88999987 899999999999999984 56778999999999999875432 2
Q ss_pred hhhhcCC----cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccC
Q 035891 81 LHRLLTS----PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFS 156 (309)
Q Consensus 81 l~~~~~~----~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 156 (309)
++..... ..+.+ +++|+.|+++++ .++.++ ..+..+++|+.|++++ +.+..++..+. .+++
T Consensus 166 ~p~~~~~~~~~~~~~~-l~~L~~L~L~~n-~l~~lp-~~l~~l~~L~~L~L~~-N~l~~l~~~l~-----------~l~~ 230 (328)
T 4fcg_A 166 LPEPLASTDASGEHQG-LVNLQSLRLEWT-GIRSLP-ASIANLQNLKSLKIRN-SPLSALGPAIH-----------HLPK 230 (328)
T ss_dssp CCSCSEEEC-CCCEEE-STTCCEEEEEEE-CCCCCC-GGGGGCTTCCEEEEES-SCCCCCCGGGG-----------GCTT
T ss_pred cChhHhhccchhhhcc-CCCCCEEECcCC-CcCcch-HhhcCCCCCCEEEccC-CCCCcCchhhc-----------cCCC
Confidence 2221100 01111 558999999996 455666 4688899999999999 46777665433 7899
Q ss_pred cceEEEeCc-eecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc
Q 035891 157 LHKVSIWGS-KLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA 234 (309)
Q Consensus 157 L~~L~l~~c-~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~ 234 (309)
|+.|++++| ....+| .++.+++|++|++++|...+.++ ..+..+++|++|++++|+.++.+|...
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-------------LDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-------------TTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-------------hhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 999999999 555555 57889999999999998887776 467899999999999999999999988
Q ss_pred cCCCCccEEeecC
Q 035891 235 LPFPHLKELEVNL 247 (309)
Q Consensus 235 ~~~~~L~~L~i~~ 247 (309)
..+++|+.+.+..
T Consensus 298 ~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 298 AQLPANCIILVPP 310 (328)
T ss_dssp GGSCTTCEEECCG
T ss_pred hhccCceEEeCCH
Confidence 8999999998875
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=164.87 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=174.1
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.++++|++++| .++.++...+.++++|++|++++|.+. ...+..+..+++|+.|+++.+....++.-
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIR------------TIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCC------------EECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCC------------ccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 56899999999 899887666999999999999999986 44557788999999999987665544321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. ... +++|+.|+++++ .+..++...+..+++|+.|++++++.+..++...+. .+++|+.|++++
T Consensus 131 ~-~~~----l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------~l~~L~~L~L~~ 194 (440)
T 3zyj_A 131 A-FVY----LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE----------GLSNLRYLNLAM 194 (440)
T ss_dssp T-SCS----CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------TCSSCCEEECTT
T ss_pred H-hhc----cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh----------cccccCeecCCC
Confidence 0 112 457999999985 567777567889999999999999999998876665 789999999999
Q ss_pred ceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEE
Q 035891 165 SKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKEL 243 (309)
Q Consensus 165 c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L 243 (309)
|+++.+|.+..+++|++|++++| .++.+.+ ..+..+++|++|++.++ .++.+....+ .+++|+.|
T Consensus 195 n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 195 CNLREIPNLTPLIKLDELDLSGN-HLSAIRP------------GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp SCCSSCCCCTTCSSCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEE
T ss_pred CcCccccccCCCcccCEEECCCC-ccCccCh------------hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEE
Confidence 98888888889999999999988 4555543 46788999999999985 6777766544 78999999
Q ss_pred eecCcccCCCCCCCCCCCCCcceEEE
Q 035891 244 EVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 244 ~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
+++++ +++.+|...-..-..++.+.
T Consensus 261 ~L~~N-~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 261 NLAHN-NLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp ECTTS-CCCCCCTTTTSSCTTCCEEE
T ss_pred ECCCC-CCCccChhHhccccCCCEEE
Confidence 99997 78887764322114444443
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.2e-19 Score=166.13 Aligned_cols=221 Identities=21% Similarity=0.263 Sum_probs=173.5
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.++.+.++++++|++|++++|.+. ...+..+..+++|+.|+++.+....++.-
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIR------------QIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccC------------CcChhhccCcccCCEEECCCCcCCccChh
Confidence 57999999999 898886555999999999999999986 44556788999999999987665544321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. +.. +++|+.|+++++ .+..++...+..+++|+.|++++|+.++.++...+. .+++|+.|++++
T Consensus 142 ~----~~~-l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------~l~~L~~L~L~~ 205 (452)
T 3zyi_A 142 A----FEY-LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE----------GLFNLKYLNLGM 205 (452)
T ss_dssp T----SSS-CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------TCTTCCEEECTT
T ss_pred h----hcc-cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc----------CCCCCCEEECCC
Confidence 1 111 457999999995 567777567889999999999999999999877665 789999999999
Q ss_pred ceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEE
Q 035891 165 SKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKEL 243 (309)
Q Consensus 165 c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L 243 (309)
|++..+|.+..+++|++|++++|. ++.+.+ ..+..+++|+.|++.++ .++.+....+ .+++|+.|
T Consensus 206 n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 206 CNIKDMPNLTPLVGLEELEMSGNH-FPEIRP------------GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp SCCSSCCCCTTCTTCCEEECTTSC-CSEECG------------GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CcccccccccccccccEEECcCCc-CcccCc------------ccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEE
Confidence 988888888899999999999874 555533 46778899999999985 6777755444 78999999
Q ss_pred eecCcccCCCCCCCCCCCCCcceEEE
Q 035891 244 EVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 244 ~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
+++++ +++.+|...-.....++.+.
T Consensus 272 ~L~~N-~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 272 NLAHN-NLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp ECCSS-CCSCCCTTSSTTCTTCCEEE
T ss_pred ECCCC-cCCccChHHhccccCCCEEE
Confidence 99997 78888764322114444443
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=1.7e-18 Score=159.37 Aligned_cols=224 Identities=17% Similarity=0.177 Sum_probs=123.7
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC--cccchhhhhccCCC
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG--SLVLVEELLGLERL 68 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~L 68 (309)
|+++++|++|++++| .+..++.+.++++++|++|++++|.+..++.++ ++... ....+..+..+++|
T Consensus 52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 52 FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 345666777777766 666553333666667777777666665554321 11110 12223445666666
Q ss_pred ceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCC-----------------------CCCeecccCccccccCCEE
Q 035891 69 NVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCH-----------------------SLSSLSVFTLASLRHLEAL 125 (309)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~-----------------------~l~~~~~~~l~~l~~L~~L 125 (309)
+.|++..+....+... .+.+ +++|+.|+++++. .+..++...+..+++|+.|
T Consensus 131 ~~L~l~~n~l~~~~~~----~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 131 KSLEVGDNDLVYISHR----AFSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp CEEEECCTTCCEECTT----SSTT-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred CEEECCCCccceeChh----hccC-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 6666654433322110 0111 2345555555532 2222222234444455555
Q ss_pred EEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcC
Q 035891 126 DMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVP 203 (309)
Q Consensus 126 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 203 (309)
++++++.+..++.... ...+|+.|++++|+++.++ .+..+++|++|++++|. ++.+..
T Consensus 206 ~l~~~~~~~~~~~~~~-----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------- 265 (477)
T 2id5_A 206 EISHWPYLDTMTPNCL-----------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-------- 265 (477)
T ss_dssp EEECCTTCCEECTTTT-----------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT--------
T ss_pred eCCCCccccccCcccc-----------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh--------
Confidence 5555444444443332 3347777777777666665 35667778888887764 444432
Q ss_pred cccccCCccCCccceeeccccccccccCCC-ccCCCCccEEeecCcccCCCCCC
Q 035891 204 SEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 204 ~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L~i~~C~~L~~lp~ 256 (309)
..+..+++|+.|.+.++ .++.+... ...+++|+.|++++| +++.+|.
T Consensus 266 ----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 266 ----SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp ----TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred ----hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 34667788888888885 56666443 337888888888886 6766664
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=162.43 Aligned_cols=204 Identities=18% Similarity=0.216 Sum_probs=163.9
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
|+++.+|++|++++| .+..++.+.+.++++|++|++++|.+. ......+..+++|+.|+++.+....
T Consensus 84 ~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 84 FKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLT------------TIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp TSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCS------------SCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred hhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCC------------eeCHhHhhccccCceeeCCCCcccc
Confidence 568899999999999 899988767999999999999999986 3333457889999999998776654
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV 160 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L 160 (309)
++... ... +++|+.|++++++.+..++...+..+++|+.|++++ +.+..++. .. .+++|+.|
T Consensus 151 ~~~~~-~~~----l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~----------~l~~L~~L 212 (440)
T 3zyj_A 151 IPSYA-FNR----IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LT----------PLIKLDEL 212 (440)
T ss_dssp ECTTT-TTT----CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CT----------TCSSCCEE
T ss_pred cCHHH-hhh----CcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cC----------CCcccCEE
Confidence 43211 112 457999999999999998866788999999999998 46776652 22 78999999
Q ss_pred EEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CC
Q 035891 161 SIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PF 237 (309)
Q Consensus 161 ~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~ 237 (309)
++++|.+..++ .+..+++|++|++++| .++.+.. ..+..+++|+.|+|+++ .++.++...+ .+
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 278 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIER------------NAFDNLQSLVEINLAHN-NLTLLPHDLFTPL 278 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECT------------TSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred ECCCCccCccChhhhccCccCCEEECCCC-ceeEECh------------hhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence 99999666653 5778899999999887 4555543 46788999999999995 7888887654 78
Q ss_pred CCccEEeecCcc
Q 035891 238 PHLKELEVNLCP 249 (309)
Q Consensus 238 ~~L~~L~i~~C~ 249 (309)
++|+.|++.++|
T Consensus 279 ~~L~~L~L~~Np 290 (440)
T 3zyj_A 279 HHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEcCCCC
Confidence 999999998754
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=5.4e-19 Score=161.73 Aligned_cols=204 Identities=20% Similarity=0.215 Sum_probs=163.2
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
|+++.+|++|++++| .++.++.+.+.++++|++|++++|.+. ......+..+++|+.|+++.+....
T Consensus 95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLT------------VIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCS------------BCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred cCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCC------------ccChhhhcccCCCCEEECCCCCcce
Confidence 578999999999999 899887666999999999999999986 3333457889999999998776654
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV 160 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L 160 (309)
++... ... +++|+.|++++|+.+..++...+..+++|+.|++++ +.+..++. .. .+++|+.|
T Consensus 162 ~~~~~-~~~----l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~----------~l~~L~~L 223 (452)
T 3zyi_A 162 IPSYA-FNR----VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LT----------PLVGLEEL 223 (452)
T ss_dssp ECTTT-TTT----CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CT----------TCTTCCEE
T ss_pred eCHhH-Hhc----CCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cc----------ccccccEE
Confidence 43211 112 557999999999999999866788999999999998 46776642 22 78999999
Q ss_pred EEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CC
Q 035891 161 SIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PF 237 (309)
Q Consensus 161 ~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~ 237 (309)
++++|.+..++ .+..+++|++|++++|. +..+.. ..+..+++|+.|+++++ .++.++...+ .+
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIER------------NAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCc-CceECH------------HHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 99999666654 57789999999998874 555533 46788999999999996 7888887654 78
Q ss_pred CCccEEeecCcc
Q 035891 238 PHLKELEVNLCP 249 (309)
Q Consensus 238 ~~L~~L~i~~C~ 249 (309)
++|+.|++.++|
T Consensus 290 ~~L~~L~L~~Np 301 (452)
T 3zyi_A 290 RYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEccCCC
Confidence 999999998764
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=156.73 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC-cccch-hhhhccCCCceEEE
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG-SLVLV-EELLGLERLNVLTI 73 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~-~~~~~-~~l~~L~~L~~L~l 73 (309)
+|++|++++| .++.+|.+.+.++++|++|++++|.+...+++. ++... -...+ ..++.+++|+.|++
T Consensus 53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 5667777776 666666544666777777777766665221110 00000 01111 12444455555544
Q ss_pred EEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCccc
Q 035891 74 TLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHG 153 (309)
Q Consensus 74 ~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (309)
+.+....++....... +++|+.|++++++.+..++...+..+++|+.|++++ +.+..+...... .
T Consensus 132 ~~n~l~~l~~~~~~~~----l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~----------~ 196 (353)
T 2z80_A 132 LGNPYKTLGETSLFSH----LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA-SDLQSYEPKSLK----------S 196 (353)
T ss_dssp TTCCCSSSCSSCSCTT----CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTT----------T
T ss_pred CCCCCcccCchhhhcc----CCCCcEEECCCCccccccCHHHccCCCCCCEEECCC-CCcCccCHHHHh----------c
Confidence 4333222221000111 234555555554444444333444455555555555 234444333222 4
Q ss_pred ccCcceEEEeCceecccC--ccCCCCCccEEEEEcC
Q 035891 154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNC 187 (309)
Q Consensus 154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c 187 (309)
+++|++|++++|.+..++ ....+++|++|++++|
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 555666666555443333 1223556666666655
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=157.72 Aligned_cols=207 Identities=19% Similarity=0.234 Sum_probs=152.7
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.++++|++++| .++.++.+.+.++++|++|++++|.+. ...+..+..+++|+.|+++.+....++..
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVS------------AVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCC------------EECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccC------------EeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 57999999999 899886555999999999999999986 45567788999999999976655544321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. +.. +++|+.|+++++. +..+....+..+++|+.|++++ +.+..+....+. .+++|+.|++++
T Consensus 99 ~----~~~-l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~l~~ 161 (477)
T 2id5_A 99 V----FTG-LSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFS----------GLNSLEQLTLEK 161 (477)
T ss_dssp S----STT-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECC-TTCCEECTTSST----------TCTTCCEEEEES
T ss_pred c----ccC-CCCCCEEECCCCc-cccCChhHccccccCCEEECCC-CccceeChhhcc----------CCCCCCEEECCC
Confidence 0 111 4579999999854 4555445678889999999998 577777665554 688899999998
Q ss_pred ceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccE
Q 035891 165 SKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKE 242 (309)
Q Consensus 165 c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ 242 (309)
|++..++ .+..+++|+.|+++++. +..+.. ..+..+++|++|++.+++.+..++.......+|++
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 228 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLN-INAIRD------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCC-CCEECT------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred CcCcccChhHhcccCCCcEEeCCCCc-CcEeCh------------hhcccCcccceeeCCCCccccccCcccccCccccE
Confidence 8777766 36778888888888874 444432 35667777888888777777777666666667777
Q ss_pred EeecCcccCCCCC
Q 035891 243 LEVNLCPKLEKLP 255 (309)
Q Consensus 243 L~i~~C~~L~~lp 255 (309)
|++++| +++.+|
T Consensus 229 L~l~~n-~l~~~~ 240 (477)
T 2id5_A 229 LSITHC-NLTAVP 240 (477)
T ss_dssp EEEESS-CCCSCC
T ss_pred EECcCC-cccccC
Confidence 777766 455555
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=9.9e-19 Score=156.88 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=78.9
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
+++|++|++++| .++.+|...++.+++|++|++++|.+. ...+..++.+++|+.|+++.+....++.
T Consensus 68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR------------YLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCC------------cCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 445555555555 555544433555555555555555554 2223345566666666665444333222
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc-------------------
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE------------------- 144 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~------------------- 144 (309)
.. ... +++|+.|+++++. +..++...+..+++|+.|+++++ .+..++......+
T Consensus 135 ~~-~~~----l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 135 GI-FHN----TPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp TT-TTT----CTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred HH-hcC----CCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcc
Confidence 10 001 3346666666532 33333233455555555555552 2322221111000
Q ss_pred ---------cccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCc
Q 035891 145 ---------VKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCR 188 (309)
Q Consensus 145 ---------~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~ 188 (309)
-...+.. .+++|+.|++++|++...+++..+++|++|++++|.
T Consensus 208 ~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 208 EELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp SEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred eEEECCCCeeeecccc-ccccccEEECCCCCCcccHHHcCCCCccEEECCCCc
Confidence 0000011 345677777777755555566677777777777763
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.2e-18 Score=148.00 Aligned_cols=200 Identities=19% Similarity=0.226 Sum_probs=94.9
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec-chhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS-FAALHR 83 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~l~~ 83 (309)
.+|++|++++| .++.+|.+.+.++++|++|++++|.+. ...+..+..+++|+.|+++.+. ...+..
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLA------------RIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccc------------eeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 34555555555 555555433555555666666555553 2233445555555555554332 222110
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW 163 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (309)
. .... +++|+.|+++++. +..++...+..+++|+.|++++ +.+..++..... .+++|+.|+++
T Consensus 99 ~-~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~l~ 161 (285)
T 1ozn_A 99 A-TFHG----LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFR----------DLGNLTHLFLH 161 (285)
T ss_dssp T-TTTT----CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECC
T ss_pred H-HhcC----CcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCC-CcccccCHhHhc----------cCCCccEEECC
Confidence 0 0001 2245555555533 2333223345555555555555 344444433332 45555666665
Q ss_pred CceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC-ccCCCCc
Q 035891 164 GSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPHL 240 (309)
Q Consensus 164 ~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L 240 (309)
+|++..++ .+..+++|++|++++|. +..+.+ ..+..+++|+.|+++++ .++.++.. ...+++|
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHP------------HAFRDLGRLMTLYLFAN-NLSALPTEALAPLRAL 227 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTC
T ss_pred CCcccccCHHHhcCccccCEEECCCCc-ccccCH------------hHccCcccccEeeCCCC-cCCcCCHHHcccCccc
Confidence 55444443 24445555666655543 222221 33445555666666553 44444432 2245555
Q ss_pred cEEeecCc
Q 035891 241 KELEVNLC 248 (309)
Q Consensus 241 ~~L~i~~C 248 (309)
+.|+++++
T Consensus 228 ~~L~l~~N 235 (285)
T 1ozn_A 228 QYLRLNDN 235 (285)
T ss_dssp CEEECCSS
T ss_pred CEEeccCC
Confidence 55555554
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.8e-18 Score=147.99 Aligned_cols=222 Identities=17% Similarity=0.216 Sum_probs=162.2
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.+|.+++.++++|++|++++|.+... ...+..+..+++|+.|+++.+....++..
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFK----------GCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEE----------EEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcc----------cCcccccccccccCEEECCCCccccChhh
Confidence 57999999999 89999988789999999999999988521 12246677899999999987766544432
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW 163 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (309)
. .. +++|+.|+++++. +..++. ..+..+++|+.|+++++ .+......... .+++|+.|+++
T Consensus 97 ~--~~----l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~~L~l~ 158 (306)
T 2z66_A 97 F--LG----LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFN----------GLSSLEVLKMA 158 (306)
T ss_dssp E--ET----CTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTT----------TCTTCCEEECT
T ss_pred c--CC----CCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC-cCCccchhhcc----------cCcCCCEEECC
Confidence 1 11 4479999999853 444432 35778899999999984 56655544443 68999999999
Q ss_pred Cceecc--cC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc-cCCCC
Q 035891 164 GSKLRH--VT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA-LPFPH 239 (309)
Q Consensus 164 ~c~l~~--l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~~~~ 239 (309)
+|.+.. +| .+..+++|++|++++|. ++.+.+ ..+..+++|++|+++++ .++.++... ..+++
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNS 224 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTT
T ss_pred CCccccccchhHHhhCcCCCEEECCCCC-cCCcCH------------HHhcCCCCCCEEECCCC-ccCccChhhccCccc
Confidence 996654 34 57788999999999884 555532 46778999999999996 677776533 47899
Q ss_pred ccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891 240 LKELEVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 240 L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
|+.|++++|.--...|......+..++.+.
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 999999998443334554444433455444
No 13
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.6e-18 Score=151.30 Aligned_cols=199 Identities=16% Similarity=0.124 Sum_probs=112.2
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
.+.+|++|++++| .++.++.+.++++++|++|++++|.+. ..+. +..+++|+.|+++.+....++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~-~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLY-------------ETLD-LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCE-------------EEEE-ETTCTTCCEEECCSSEEEEEE
T ss_pred cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCC-------------cchh-hhhcCCCCEEECcCCcccccc
Confidence 4568999999999 899887656999999999999999985 2222 788899999998766554433
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.. ++|+.|+++++ .+..++. ..+++|+.|++++ +.+..++..... .+++|+.|++
T Consensus 97 ~~----------~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~L 151 (317)
T 3o53_A 97 VG----------PSIETLHAANN-NISRVSC---SRGQGKKNIYLAN-NKITMLRDLDEG----------CRSRVQYLDL 151 (317)
T ss_dssp EC----------TTCCEEECCSS-CCSEEEE---CCCSSCEEEECCS-SCCCSGGGBCTG----------GGSSEEEEEC
T ss_pred CC----------CCcCEEECCCC-ccCCcCc---cccCCCCEEECCC-CCCCCccchhhh----------ccCCCCEEEC
Confidence 21 14666666653 2333321 1234555565555 344443332222 4555555555
Q ss_pred eCceecccC--cc-CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCC
Q 035891 163 WGSKLRHVT--WL-ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPH 239 (309)
Q Consensus 163 ~~c~l~~l~--~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~ 239 (309)
++|.+..++ .+ ..+++|++|++++|. ++.+. ....+++|++|+++++ .++.++.....+++
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--------------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--------------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAG 215 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--------------CCCCCTTCCEEECCSS-CCCEECGGGGGGTT
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc--------------cccccccCCEEECCCC-cCCcchhhhcccCc
Confidence 555333321 11 234555555555542 33331 1223555555555553 44445444444555
Q ss_pred ccEEeecCcccCCCCCCCC
Q 035891 240 LKELEVNLCPKLEKLPFDC 258 (309)
Q Consensus 240 L~~L~i~~C~~L~~lp~~~ 258 (309)
|+.|++++| +++.+|...
T Consensus 216 L~~L~L~~N-~l~~l~~~~ 233 (317)
T 3o53_A 216 VTWISLRNN-KLVLIEKAL 233 (317)
T ss_dssp CSEEECTTS-CCCEECTTC
T ss_pred ccEEECcCC-cccchhhHh
Confidence 555555554 444444433
No 14
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=6e-18 Score=141.57 Aligned_cols=200 Identities=16% Similarity=0.181 Sum_probs=142.1
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC-CCCccCCccccCCcccchhhhhccCCCceEEEEE-ecchhhhh
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG-SSKQESDSILFGGSLVLVEELLGLERLNVLTITL-QSFAALHR 83 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~-~~~~~l~~ 83 (309)
+|++|++++| .++.+|.+.++.+++|++|++++|. +. ......+..+++|+.|+++. +....++.
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQ------------QLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCC------------EECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcc------------eeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 6889999998 8888887668889999999999887 64 22334577888999999886 55554432
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCC---EEEEecCCCCceEEcCccCcccccCCCcccccCcc-e
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLE---ALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH-K 159 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~---~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~-~ 159 (309)
. .+.+ +++|+.|+++++. ++.++ .+..+++|+ .|+++++..++.++...+. .+++|+ .
T Consensus 99 ~----~f~~-l~~L~~L~l~~n~-l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~----------~l~~L~~~ 160 (239)
T 2xwt_C 99 D----ALKE-LPLLKFLGIFNTG-LKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQ----------GLCNETLT 160 (239)
T ss_dssp T----SEEC-CTTCCEEEEEEEC-CCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTT----------TTBSSEEE
T ss_pred H----HhCC-CCCCCEEeCCCCC-Ccccc--ccccccccccccEEECCCCcchhhcCccccc----------chhcceeE
Confidence 1 1111 4478889998854 45554 266667777 8899885478888776554 688888 9
Q ss_pred EEEeCceecccCc-cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccC-CccceeeccccccccccCCCccCC
Q 035891 160 VSIWGSKLRHVTW-LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPF-ARLESLSLYALGNLRSIYPKALPF 237 (309)
Q Consensus 160 L~l~~c~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~L~~l~~~~~~~ 237 (309)
|++++|+++.++. ....++|++|++++|..++.++. ..+..+ ++|+.|++++ +.++.++.. .+
T Consensus 161 L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~------------~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~ 225 (239)
T 2xwt_C 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK------------DAFGGVYSGPSLLDVSQ-TSVTALPSK--GL 225 (239)
T ss_dssp EECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT------------TTTTTCSBCCSEEECTT-CCCCCCCCT--TC
T ss_pred EEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH------------HHhhccccCCcEEECCC-CccccCChh--Hh
Confidence 9998886666652 12237888899988765666653 345667 8899999988 467777754 67
Q ss_pred CCccEEeecCcccC
Q 035891 238 PHLKELEVNLCPKL 251 (309)
Q Consensus 238 ~~L~~L~i~~C~~L 251 (309)
++|+.|++.+++.|
T Consensus 226 ~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 226 EHLKELIARNTWTL 239 (239)
T ss_dssp TTCSEEECTTC---
T ss_pred ccCceeeccCccCC
Confidence 88888888887654
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=9.6e-18 Score=147.06 Aligned_cols=212 Identities=15% Similarity=0.124 Sum_probs=120.8
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.+|.+.++++++|++|++++|.+. ...+..++.+++|+.|+++.+....++..
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 118 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS------------KISPGAFAPLVKLERLYLSKNQLKELPEK 118 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC------------CBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCC------------eeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence 46788888888 788777655788888888888888875 34466677888888888876654433321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce--EEcCccCc-------------ccccCC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE--MEIDYAGE-------------EVKRIR 149 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~-------------~~~~~~ 149 (309)
. .++|+.|+++++ .+..++...+..+++|+.|+++++ .+.. +....... ... ++
T Consensus 119 ~--------~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~ 187 (330)
T 1xku_A 119 M--------PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITT-IP 187 (330)
T ss_dssp C--------CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred h--------cccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcccc-CC
Confidence 1 115666666664 333443234555666666666653 2221 11111110 000 00
Q ss_pred CcccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccc
Q 035891 150 ETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNL 227 (309)
Q Consensus 150 ~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 227 (309)
.. .+++|+.|++++|++..++ .+..+++|++|++++|. ++.+.. ..+..+++|++|+++++ .+
T Consensus 188 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l 252 (330)
T 1xku_A 188 QG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN------------GSLANTPHLRELHLNNN-KL 252 (330)
T ss_dssp SS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT------------TTGGGSTTCCEEECCSS-CC
T ss_pred cc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeCh------------hhccCCCCCCEEECCCC-cC
Confidence 00 2345555555555333332 34455566666665543 333321 24556777777777775 56
Q ss_pred cccCCCccCCCCccEEeecCcccCCCCCC
Q 035891 228 RSIYPKALPFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 228 ~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 256 (309)
+.++.....+++|++|++++| .++.+|.
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred ccCChhhccCCCcCEEECCCC-cCCccCh
Confidence 677666667777777777776 5666654
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=5.2e-18 Score=146.15 Aligned_cols=198 Identities=19% Similarity=0.180 Sum_probs=160.2
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+++.+++.++++++ .++.+|.+ +. +++++|++++|.+. ...+..+..+++|+.|+++.+....+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPD-LP--KDTTILHLSENLLY------------TFSLATLMPYTRLTQLNLDRAELTKL 70 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSC-CC--TTCCEEECTTSCCS------------EEEGGGGTTCTTCCEEECTTSCCCEE
T ss_pred cccCCccEEECCCC-CCCcCCCC-CC--CCCCEEEcCCCcCC------------ccCHHHhhcCCCCCEEECCCCccCcc
Confidence 57889999999999 99999987 43 78999999999996 55567789999999999976665554
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS 161 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 161 (309)
+.. .. +++|+.|+++++ .+..++ ..+..+++|+.|++++ +.++.++...+. .+++|+.|+
T Consensus 71 ~~~---~~----l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~l~~-N~l~~l~~~~~~----------~l~~L~~L~ 130 (290)
T 1p9a_G 71 QVD---GT----LPVLGTLDLSHN-QLQSLP-LLGQTLPALTVLDVSF-NRLTSLPLGALR----------GLGELQELY 130 (290)
T ss_dssp ECC---SC----CTTCCEEECCSS-CCSSCC-CCTTTCTTCCEEECCS-SCCCCCCSSTTT----------TCTTCCEEE
T ss_pred cCC---CC----CCcCCEEECCCC-cCCcCc-hhhccCCCCCEEECCC-CcCcccCHHHHc----------CCCCCCEEE
Confidence 432 22 457999999985 566665 4567889999999998 678888766554 789999999
Q ss_pred EeCceecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCC
Q 035891 162 IWGSKLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPH 239 (309)
Q Consensus 162 l~~c~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~ 239 (309)
+++|++..++. +..+++|+.|++++| .++.++. ..+..+++|++|+++++ .++.++...+..++
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~ 196 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------------GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHL 196 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCC-cCCccCH------------HHhcCcCCCCEEECCCC-cCCccChhhccccc
Confidence 99997777763 567899999999887 4666653 34577999999999995 79999998888899
Q ss_pred ccEEeecCcc
Q 035891 240 LKELEVNLCP 249 (309)
Q Consensus 240 L~~L~i~~C~ 249 (309)
|+.+++.+.|
T Consensus 197 L~~l~L~~Np 206 (290)
T 1p9a_G 197 LPFAFLHGNP 206 (290)
T ss_dssp CSEEECCSCC
T ss_pred CCeEEeCCCC
Confidence 9999998754
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=147.93 Aligned_cols=226 Identities=15% Similarity=0.121 Sum_probs=122.4
Q ss_pred CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCC-c---------cccCC--cccchhhhhccCCCceEEEE
Q 035891 7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESD-S---------ILFGG--SLVLVEELLGLERLNVLTIT 74 (309)
Q Consensus 7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~-~---------~l~~~--~~~~~~~l~~L~~L~~L~l~ 74 (309)
....+.+++ .++.+|.+ +. ++|++|++++|.+...+.+ + ++... ....+..+..+++|++|+++
T Consensus 33 ~~~c~~~~~-~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSG-SLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCST-TCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCC-Cccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 456788888 89999986 44 5899999999999754431 1 11111 11122335555555555555
Q ss_pred Eecchhhhhh-cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcc
Q 035891 75 LQSFAALHRL-LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETH 152 (309)
Q Consensus 75 ~~~~~~l~~~-~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (309)
.+....++.. .. . +++|+.|+++++ .+..++. ..+..+++|+.|++++++.+..++.....
T Consensus 109 ~n~l~~~~~~~~~--~----l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---------- 171 (353)
T 2z80_A 109 YNYLSNLSSSWFK--P----LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA---------- 171 (353)
T ss_dssp SSCCSSCCHHHHT--T----CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT----------
T ss_pred CCcCCcCCHhHhC--C----CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHcc----------
Confidence 4443332221 00 1 224666666653 3344442 24555666666666665445555444333
Q ss_pred cccCcceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891 153 GFFSLHKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI 230 (309)
Q Consensus 153 ~~~~L~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l 230 (309)
.+++|++|++++|++..+ + .+..+++|++|++++|. ++.++. .....+++|+.|+++++ .++.+
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~------------~~~~~~~~L~~L~L~~n-~l~~~ 237 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLE------------IFVDVTSSVECLELRDT-DLDTF 237 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHH------------HHHHHTTTEEEEEEESC-BCTTC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchh------------hhhhhcccccEEECCCC-ccccc
Confidence 566666666666643333 1 34556666666666653 232221 11233566666666654 34332
Q ss_pred CC--------------------------------CccCCCCccEEeecCcccCCCCCCCC-CCCCCcceEEE
Q 035891 231 YP--------------------------------KALPFPHLKELEVNLCPKLEKLPFDC-TSGQERKLIIK 269 (309)
Q Consensus 231 ~~--------------------------------~~~~~~~L~~L~i~~C~~L~~lp~~~-~~~~~~l~~~~ 269 (309)
+. ....+++|++|++++| +++.+|... ... ..++.+.
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l-~~L~~L~ 307 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRL-TSLQKIW 307 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEE
T ss_pred cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcC-CCCCEEE
Confidence 21 1235778888888887 677777654 333 4455443
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=5.2e-18 Score=160.49 Aligned_cols=229 Identities=16% Similarity=0.186 Sum_probs=110.6
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
++++|++|++++| .+..+|...++.+++|++|++++|.+. ...+..++.+++|+.|+++.+....++
T Consensus 73 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 73 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR------------YLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCC------------CCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 3556666666666 566555433666666666666666664 222334556666666666544443322
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCccc-----------------
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEV----------------- 145 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~----------------- 145 (309)
... +.. +++|+.|+++++. +..++...+..+++|+.|+++++ .+..++......+.
T Consensus 140 ~~~-~~~----l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 140 RGI-FHN----TPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp TTT-TTT----CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred HHH-hcc----CCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCch
Confidence 210 001 3356666666542 33333234555555666665552 33322211111000
Q ss_pred -----------ccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCcccccccccc-ccCC------cC---c
Q 035891 146 -----------KRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLE-KLGE------VP---S 204 (309)
Q Consensus 146 -----------~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~-~~~~------~~---~ 204 (309)
..++.. .+++|+.|++++|.+...+++..+++|++|++++|. +..+++.. .... .. .
T Consensus 213 L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 213 VEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp CSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC
T ss_pred hheeeccCCcccccccc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC
Confidence 000001 234566666666655555556667777777777664 33332210 0000 00 0
Q ss_pred cc-ccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCC
Q 035891 205 EE-MQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLP 255 (309)
Q Consensus 205 ~~-~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp 255 (309)
.. ......+|+|+.|+++++ .+..++.....+++|+.|++++| .+..+|
T Consensus 291 ~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~ 340 (597)
T 3oja_B 291 VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK 340 (597)
T ss_dssp CEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred CCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcC
Confidence 00 022344666666666664 45555555556666677776665 344444
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=1.6e-17 Score=148.99 Aligned_cols=231 Identities=16% Similarity=0.170 Sum_probs=143.0
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC--cccchhhhhccCCC
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG--SLVLVEELLGLERL 68 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~L 68 (309)
|+++++|++|++++| .+..+|.+.++++++|++|++++|.+..++.++ ++... ....+..++.+++|
T Consensus 89 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred ccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 467788888888888 788776665788888888888888887555432 11110 12223346666777
Q ss_pred ceEEEEEecchhhhhhcCCcCcc------------ccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE
Q 035891 69 NVLTITLQSFAALHRLLTSPSLQ------------SIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM 136 (309)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~l~------------~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l 136 (309)
+.|+++.+....+. ......+. ...++|+.|+++++ .+..++. ...++|+.|+++++ .+...
T Consensus 168 ~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~n-~l~~~ 241 (390)
T 3o6n_A 168 QNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHN-NLTDT 241 (390)
T ss_dssp CEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCCEEEC---CCCSSCCEEECCSS-CCCCC
T ss_pred CEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECCCC-eeeeccc---cccccccEEECCCC-CCccc
Confidence 77777655443221 11100000 00123444444442 2233321 12356778888774 45443
Q ss_pred EcCccCcccccCCCcccccCcceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCC
Q 035891 137 EIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFA 214 (309)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (309)
.... .+++|+.|++++|.+..+ + .+..+++|++|++++| .++.++ .....++
T Consensus 242 --~~l~----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------~~~~~l~ 295 (390)
T 3o6n_A 242 --AWLL----------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN-------------LYGQPIP 295 (390)
T ss_dssp --GGGG----------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEE-------------CSSSCCT
T ss_pred --HHHc----------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccC-------------cccCCCC
Confidence 2222 688999999999955554 2 4677899999999887 455553 3456789
Q ss_pred ccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891 215 RLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 215 ~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
+|++|+++++ .++.++.....+++|+.|++++| .++.+|.. .. ..++.+.
T Consensus 296 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~-~~L~~L~ 345 (390)
T 3o6n_A 296 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLS--TH-HTLKNLT 345 (390)
T ss_dssp TCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCC--TT-CCCSEEE
T ss_pred CCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeCch--hh-ccCCEEE
Confidence 9999999986 68788776668899999999997 46666632 22 4455554
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=3e-17 Score=150.03 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=57.4
Q ss_pred ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891 154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY 231 (309)
Q Consensus 154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 231 (309)
+++|+.|++++|++..++ .+..+++|++|++++|. ++.+.+ ..+..+++|++|+++++ .++.+.
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~ 363 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS------------RMFENLDKLEVLDLSYN-HIRALG 363 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG------------GGGTTCTTCCEEECCSS-CCCEEC
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh------------hHhcCcccCCEEECCCC-cccccC
Confidence 445555555555333332 23445555555555542 233321 34567888888888886 566663
Q ss_pred -CCccCCCCccEEeecCcccCCCCCCCC-CCCCCcceEEE
Q 035891 232 -PKALPFPHLKELEVNLCPKLEKLPFDC-TSGQERKLIIK 269 (309)
Q Consensus 232 -~~~~~~~~L~~L~i~~C~~L~~lp~~~-~~~~~~l~~~~ 269 (309)
.....+++|++|++++| +++.+|... ... ..++.+.
T Consensus 364 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~ 401 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTN-QLKSVPDGIFDRL-TSLQKIW 401 (455)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEE
T ss_pred hhhccccccccEEECCCC-ccccCCHhHhccC-CcccEEE
Confidence 34457888888888886 677777643 233 4444443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=2.9e-17 Score=150.16 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=58.3
Q ss_pred CcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC
Q 035891 156 SLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK 233 (309)
Q Consensus 156 ~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~ 233 (309)
+|+.|++++|++..++ .++.+++|++|++++|. +..+++ ..+..+++|++|+++++ .++.+...
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~ 341 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD------------NAFWGLTHLLKLNLSQN-FLGSIDSR 341 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CCCEECGG
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccCh------------hHhcCcccCCEEECCCC-ccCCcChh
Confidence 4555555555333321 34556666666666553 333322 35677889999999886 66766543
Q ss_pred -ccCCCCccEEeecCcccCCCC-CCCCCCCCCcceEEE
Q 035891 234 -ALPFPHLKELEVNLCPKLEKL-PFDCTSGQERKLIIK 269 (309)
Q Consensus 234 -~~~~~~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~~~ 269 (309)
...+++|++|++++| ++..+ |...... ..++.+.
T Consensus 342 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~ 377 (455)
T 3v47_A 342 MFENLDKLEVLDLSYN-HIRALGDQSFLGL-PNLKELA 377 (455)
T ss_dssp GGTTCTTCCEEECCSS-CCCEECTTTTTTC-TTCCEEE
T ss_pred HhcCcccCCEEECCCC-cccccChhhcccc-ccccEEE
Confidence 347889999999987 45554 5444444 4444443
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=1.1e-18 Score=152.16 Aligned_cols=209 Identities=15% Similarity=0.134 Sum_probs=151.7
Q ss_pred CCCCCCCcEEecCC-CcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891 1 LKYLVNLKCLNLEY-TYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF 78 (309)
Q Consensus 1 l~~L~~Lr~L~l~~-~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~ 78 (309)
|+++++|++|++++ + .+. .+|.. ++++++|++|++++|.+. ...+..+..+++|++|+++.+..
T Consensus 72 l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~l~------------~~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 72 LANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHTNVS------------GAIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp GGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEECCE------------EECCGGGGGCTTCCEEECCSSEE
T ss_pred HhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCCeeC------------CcCCHHHhCCCCCCEEeCCCCcc
Confidence 46789999999995 6 555 68887 999999999999999996 56778899999999999987665
Q ss_pred h-hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccc-cCCEEEEecCCCCceEEcCccCcccccCCCcccccC
Q 035891 79 A-ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFS 156 (309)
Q Consensus 79 ~-~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 156 (309)
. .++.... . +++|+.|+++++.....++ ..+..++ +|+.|+++++ .+......... .+.
T Consensus 138 ~~~~p~~~~--~----l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~----------~l~- 198 (313)
T 1ogq_A 138 SGTLPPSIS--S----LPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRN-RLTGKIPPTFA----------NLN- 198 (313)
T ss_dssp ESCCCGGGG--G----CTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSS-EEEEECCGGGG----------GCC-
T ss_pred CCcCChHHh--c----CCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCC-eeeccCChHHh----------CCc-
Confidence 5 2332211 1 4479999999965433454 4667777 8999999984 55533333332 344
Q ss_pred cceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc-ccCCC
Q 035891 157 LHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR-SIYPK 233 (309)
Q Consensus 157 L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~-~l~~~ 233 (309)
|+.|++++|.+...+ .+..+++|++|++++|.....+ ..+..+++|++|+++++ .+. .++..
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~~l~~L~~L~Ls~N-~l~~~~p~~ 263 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------------GKVGLSKNLNGLDLRNN-RIYGTLPQG 263 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--------------GGCCCCTTCCEEECCSS-CCEECCCGG
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec--------------CcccccCCCCEEECcCC-cccCcCChH
Confidence 999999999555433 4677899999999887543333 23567889999999986 454 66666
Q ss_pred ccCCCCccEEeecCcccCCCCCCC
Q 035891 234 ALPFPHLKELEVNLCPKLEKLPFD 257 (309)
Q Consensus 234 ~~~~~~L~~L~i~~C~~L~~lp~~ 257 (309)
...+++|+.|++++|+--..+|..
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS
T ss_pred HhcCcCCCEEECcCCcccccCCCC
Confidence 668889999999987444356664
No 23
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.1e-17 Score=154.45 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=130.2
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
..+|++|++++| .+..++...++.+++|++|++++|.+. . .+. +..+++|+.|+++.+....++.
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~-~~~-l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLY------------E-TLD-LESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCE------------E-EEE-CTTCTTCCEEECCSSEEEEEEE
T ss_pred CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCC------------C-Ccc-cccCCCCCEEEecCCcCCCCCC
Confidence 458999999999 898887555999999999999999985 2 222 7788888888887665544332
Q ss_pred hcCCcCc-------c----ccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcc
Q 035891 84 LLTSPSL-------Q----SIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETH 152 (309)
Q Consensus 84 ~~~~~~l-------~----~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (309)
...+..+ . ..+++|+.|+++++. +..++...+..+++|+.|++++ +.+..+.......
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~--------- 166 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAA--------- 166 (487)
T ss_dssp CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGG---------
T ss_pred CCCcCEEECcCCcCCCCCccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhh---------
Confidence 1110000 0 013345666665533 3333223455666677777766 3555544333211
Q ss_pred cccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC
Q 035891 153 GFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP 232 (309)
Q Consensus 153 ~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 232 (309)
.+++|+.|++++|.+..++....+++|++|++++|. +..++ ..+..+++|+.|+++++ .+..++.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~-------------~~~~~l~~L~~L~Ls~N-~l~~lp~ 231 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMG-------------PEFQSAAGVTWISLRNN-KLVLIEK 231 (487)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC-CCEEC-------------GGGGGGTTCSEEECTTS-CCCEECT
T ss_pred hCCcccEEecCCCccccccccccCCCCCEEECCCCC-CCCCC-------------HhHcCCCCccEEEecCC-cCcccch
Confidence 467777777777755555555567777777777663 44443 24566777777777774 5667776
Q ss_pred CccCCCCccEEeecCccc
Q 035891 233 KALPFPHLKELEVNLCPK 250 (309)
Q Consensus 233 ~~~~~~~L~~L~i~~C~~ 250 (309)
....+++|+.|++++|+-
T Consensus 232 ~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp TCCCCTTCCEEECTTCCB
T ss_pred hhccCCCCCEEEcCCCCC
Confidence 666677777777776543
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=5.9e-18 Score=147.43 Aligned_cols=215 Identities=15% Similarity=0.114 Sum_probs=158.8
Q ss_pred CCCcEEecCCCcCCC---CCchhhhcCCCCCceEEecc-cCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-
Q 035891 5 VNLKCLNLEYTYRIY---KIPGQVISNLKMLEALRMFK-CGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA- 79 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~---~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~- 79 (309)
.+++.|+++++ .+. .+|.. ++++++|++|++++ +.+. ...+..++.+++|++|+++.+...
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~------------~~~p~~l~~l~~L~~L~Ls~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLV------------GPIPPAIAKLTQLHYLYITHTNVSG 115 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEE------------SCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCccc------------ccCChhHhcCCCCCEEECcCCeeCC
Confidence 57999999999 777 58887 99999999999995 7775 567788999999999999988765
Q ss_pred hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCc-eEEcCccCcccccCCCccccc-Cc
Q 035891 80 ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE-EMEIDYAGEEVKRIRETHGFF-SL 157 (309)
Q Consensus 80 ~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~-~L 157 (309)
.++.... . +++|+.|+++++.....++ ..+..+++|+.|+++++ .+. .++..+. .++ +|
T Consensus 116 ~~p~~~~--~----l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~-----------~l~~~L 176 (313)
T 1ogq_A 116 AIPDFLS--Q----IKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGN-RISGAIPDSYG-----------SFSKLF 176 (313)
T ss_dssp ECCGGGG--G----CTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSS-CCEEECCGGGG-----------CCCTTC
T ss_pred cCCHHHh--C----CCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCC-cccCcCCHHHh-----------hhhhcC
Confidence 3333211 1 4479999999965433444 46788999999999994 565 4554443 455 99
Q ss_pred ceEEEeCceec-ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc
Q 035891 158 HKVSIWGSKLR-HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL 235 (309)
Q Consensus 158 ~~L~l~~c~l~-~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~ 235 (309)
+.|++++|.+. .+| .+..++ |++|++++|.....++ ..+..+++|++|+++++ .+........
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 241 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-------------VLFGSDKNTQKIHLAKN-SLAFDLGKVG 241 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-------------GGCCTTSCCSEEECCSS-EECCBGGGCC
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-------------HHHhcCCCCCEEECCCC-ceeeecCccc
Confidence 99999999555 344 455565 9999999985433332 46788999999999996 5654444456
Q ss_pred CCCCccEEeecCcccCCCCCCCCCCCCCcceEE
Q 035891 236 PFPHLKELEVNLCPKLEKLPFDCTSGQERKLII 268 (309)
Q Consensus 236 ~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 268 (309)
.+++|++|++++|.--..+|..+... ..++.+
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L 273 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSL 273 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGC-TTCCEE
T ss_pred ccCCCCEEECcCCcccCcCChHHhcC-cCCCEE
Confidence 78999999999984433677665544 444444
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.2e-17 Score=145.13 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=156.5
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
++.+|++|+++++ .+..+|. +..+++|++|++++|.+. .... +..+++|+.|+++.+....++
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~-------------~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQIT-------------DLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCC-------------CCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred HcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCC-------------CChh-HccCCCCCEEEccCCcCCCch
Confidence 4678999999999 8999984 899999999999999985 2333 889999999999877766654
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.+.. +++|+.|+++++. +..++ .+..+++|+.|+++++ .+..++. .. .+++|+.|++
T Consensus 102 ~~~~-------l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--l~----------~l~~L~~L~l 158 (308)
T 1h6u_A 102 AIAG-------LQSIKTLDLTSTQ-ITDVT--PLAGLSNLQVLYLDLN-QITNISP--LA----------GLTNLQYLSI 158 (308)
T ss_dssp GGTT-------CTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECCSS-CCCCCGG--GG----------GCTTCCEEEC
T ss_pred hhcC-------CCCCCEEECCCCC-CCCch--hhcCCCCCCEEECCCC-ccCcCcc--cc----------CCCCccEEEc
Confidence 3333 4479999999964 55553 4788999999999984 6666543 22 7899999999
Q ss_pred eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccE
Q 035891 163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKE 242 (309)
Q Consensus 163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ 242 (309)
++|++..++.+..+++|++|++++| .++.+. .+..+++|++|+++++ .++.++. ...+++|+.
T Consensus 159 ~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~--------------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~ 221 (308)
T 1h6u_A 159 GNAQVSDLTPLANLSKLTTLKADDN-KISDIS--------------PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFI 221 (308)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG--------------GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCE
T ss_pred cCCcCCCChhhcCCCCCCEEECCCC-ccCcCh--------------hhcCCCCCCEEEccCC-ccCcccc-ccCCCCCCE
Confidence 9998888777889999999999987 455553 3678999999999996 6777763 558999999
Q ss_pred EeecCcccCCCCCC
Q 035891 243 LEVNLCPKLEKLPF 256 (309)
Q Consensus 243 L~i~~C~~L~~lp~ 256 (309)
|++++++ +...|.
T Consensus 222 L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 222 VTLTNQT-ITNQPV 234 (308)
T ss_dssp EEEEEEE-EECCCE
T ss_pred EEccCCe-eecCCe
Confidence 9999874 555554
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=4e-17 Score=139.11 Aligned_cols=197 Identities=18% Similarity=0.230 Sum_probs=150.4
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
..++++++++ .++.+|.. +. ++|++|++++|.+. ......+..+++|+.|+++.+....++...
T Consensus 17 ~~~~l~~~~~-~l~~ip~~-~~--~~l~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSN-IP--ADTKKLDLQSNKLS------------SLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp TTTEEECTTS-CCSSCCSC-CC--TTCSEEECCSSCCS------------CCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCEEEccCC-CCCccCCC-CC--CCCCEEECcCCCCC------------eeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 4788999998 89999986 43 68999999999986 333446888999999999766554433211
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
... +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++|
T Consensus 81 -~~~----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 81 -FKE----LKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFD----------SLTKLTYLSLGYN 143 (270)
T ss_dssp -TSS----CTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSS
T ss_pred -hcC----CCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhC----------cCcCCCEEECCCC
Confidence 111 447999999985 45666645678889999999998 577777766554 7899999999999
Q ss_pred eecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccE
Q 035891 166 KLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKE 242 (309)
Q Consensus 166 ~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~ 242 (309)
.+..++. +..+++|++|++++| .++.++. ..+..+++|++|+++++ .++.++...+ .+++|+.
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred cCCccCHhHccCCcccceeEecCC-cCcEeCh------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCE
Confidence 7777763 677899999999887 4555542 34677899999999986 7888877644 7899999
Q ss_pred EeecCcc
Q 035891 243 LEVNLCP 249 (309)
Q Consensus 243 L~i~~C~ 249 (309)
|+++++|
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 9998864
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1e-17 Score=145.32 Aligned_cols=204 Identities=16% Similarity=0.135 Sum_probs=152.8
Q ss_pred CCCCCCCcEEecCCCcCCCCC---chhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891 1 LKYLVNLKCLNLEYTYRIYKI---PGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS 77 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~l---p~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~ 77 (309)
|+++++|++|++++| .++.+ |.. +..+++|++|++++|.+ ..++..+..+++|+.|+++.+.
T Consensus 48 ~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i-------------~~l~~~~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 48 FDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNGV-------------ITMSSNFLGLEQLEHLDFQHSN 112 (306)
T ss_dssp TTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCSE-------------EEEEEEEETCTTCCEEECTTSE
T ss_pred hhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCcc-------------ccChhhcCCCCCCCEEECCCCc
Confidence 468899999999999 88765 565 77899999999999988 4556668889999999997666
Q ss_pred chhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce-EEcCccCcccccCCCcccccC
Q 035891 78 FAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE-MEIDYAGEEVKRIRETHGFFS 156 (309)
Q Consensus 78 ~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~ 156 (309)
...+........ +++|+.|+++++. +.......+..+++|+.|+++++ .+.. ....... .+++
T Consensus 113 l~~~~~~~~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~----------~l~~ 176 (306)
T 2z66_A 113 LKQMSEFSVFLS----LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFT----------ELRN 176 (306)
T ss_dssp EESSTTTTTTTT----CTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCT----------TCTT
T ss_pred ccccccchhhhh----ccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC-ccccccchhHHh----------hCcC
Confidence 555443222223 4479999999864 44444356788899999999985 4443 3333333 7899
Q ss_pred cceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC-C
Q 035891 157 LHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP-K 233 (309)
Q Consensus 157 L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~ 233 (309)
|+.|++++|++..++ .+..+++|++|++++|. ++.+.. ..+..+++|++|+++++ .+..... .
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~ 242 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT------------FPYKCLNSLQVLDYSLN-HIMTSKKQE 242 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCS------------GGGTTCTTCCEEECTTS-CCCBCSSSS
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccCh------------hhccCcccCCEeECCCC-CCcccCHHH
Confidence 999999999766663 56788999999999874 444432 35678899999999997 5655444 4
Q ss_pred ccCCC-CccEEeecCcc
Q 035891 234 ALPFP-HLKELEVNLCP 249 (309)
Q Consensus 234 ~~~~~-~L~~L~i~~C~ 249 (309)
...++ +|++|++++++
T Consensus 243 ~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCCCTTCCEEECTTCC
T ss_pred HHhhhccCCEEEccCCC
Confidence 44664 89999999863
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.3e-17 Score=143.59 Aligned_cols=214 Identities=18% Similarity=0.203 Sum_probs=152.6
Q ss_pred CCCCCCCcEEecCCCcCCCCC-chhhhcCCCCCceEEecccCCCCccCCc-------cccC--CcccchhhhhccCCCce
Q 035891 1 LKYLVNLKCLNLEYTYRIYKI-PGQVISNLKMLEALRMFKCGSSKQESDS-------ILFG--GSLVLVEELLGLERLNV 70 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~~~~-------~l~~--~~~~~~~~l~~L~~L~~ 70 (309)
|+++++|++|++++| .++.+ |.. ++++++|++|++++|.+..++..+ ++.. ........+..+++|+.
T Consensus 72 ~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 72 FKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred hccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccE
Confidence 567899999999999 88887 554 999999999999999988766543 1111 12223345777888888
Q ss_pred EEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCC
Q 035891 71 LTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRE 150 (309)
Q Consensus 71 L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (309)
|+++.+.......... .+.. +++|+.|+++++. +..++. .+ .++|+.|++++ +.+..+......
T Consensus 150 L~l~~n~l~~~~~~~~--~~~~-l~~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~-n~l~~~~~~~~~-------- 213 (330)
T 1xku_A 150 VELGTNPLKSSGIENG--AFQG-MKKLSYIRIADTN-ITTIPQ-GL--PPSLTELHLDG-NKITKVDAASLK-------- 213 (330)
T ss_dssp EECCSSCCCGGGBCTT--GGGG-CTTCCEEECCSSC-CCSCCS-SC--CTTCSEEECTT-SCCCEECTGGGT--------
T ss_pred EECCCCcCCccCcChh--hccC-CCCcCEEECCCCc-cccCCc-cc--cccCCEEECCC-CcCCccCHHHhc--------
Confidence 8886554432211111 1111 4578888888853 455542 22 26889999988 467777655544
Q ss_pred cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891 151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228 (309)
Q Consensus 151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 228 (309)
.+++|+.|++++|.+..++ .+..+++|++|++++| .++.++ ..+..+++|++|+++++ .++
T Consensus 214 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp-------------~~l~~l~~L~~L~l~~N-~i~ 276 (330)
T 1xku_A 214 --GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP-------------GGLADHKYIQVVYLHNN-NIS 276 (330)
T ss_dssp --TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC-------------TTTTTCSSCCEEECCSS-CCC
T ss_pred --CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCC-------------hhhccCCCcCEEECCCC-cCC
Confidence 7899999999999666654 4778899999999998 455554 46778999999999996 688
Q ss_pred ccCCCcc-------CCCCccEEeecCcc
Q 035891 229 SIYPKAL-------PFPHLKELEVNLCP 249 (309)
Q Consensus 229 ~l~~~~~-------~~~~L~~L~i~~C~ 249 (309)
.++...+ ..++|+.+++.+.|
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccChhhcCCcccccccccccceEeecCc
Confidence 8876544 24778888888865
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=2e-17 Score=145.15 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=135.9
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .+..++.+.+.++++|++|++++|.+. ...+..++.+++|+.|+++.+....++..
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 120 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKIS------------KIHEKAFSPLRKLQKLYISKNHLVEIPPN 120 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC------------EECGGGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccC------------ccCHhHhhCcCCCCEEECCCCcCCccCcc
Confidence 46788888887 777765544778888888888888775 44567788899999998876655543321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce--EEcCccCc------------ccccCCC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE--MEIDYAGE------------EVKRIRE 150 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~------------~~~~~~~ 150 (309)
.. ++|+.|+++++ .+..++...+..+++|+.|+++++ .++. +....... ... ++.
T Consensus 121 ~~--------~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~ 189 (332)
T 2ft3_A 121 LP--------SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK 189 (332)
T ss_dssp CC--------TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCS
T ss_pred cc--------ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCc-cCc
Confidence 11 26888998885 455565445778889999998874 4432 11111110 000 001
Q ss_pred cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891 151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228 (309)
Q Consensus 151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 228 (309)
. .+++|+.|++++|.+..++ .+..+++|++|++++| .++.+.. ..+..+++|++|+++++ .++
T Consensus 190 ~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~ 254 (332)
T 2ft3_A 190 D-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN------------GSLSFLPTLRELHLDNN-KLS 254 (332)
T ss_dssp S-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT------------TGGGGCTTCCEEECCSS-CCC
T ss_pred c-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCCh------------hHhhCCCCCCEEECCCC-cCe
Confidence 1 2356666666666444443 3555666777777665 3333321 24667788888888885 677
Q ss_pred ccCCCccCCCCccEEeecCcccCCCCCC
Q 035891 229 SIYPKALPFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 229 ~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 256 (309)
.++.....+++|+.|+++++ +++.+|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred ecChhhhcCccCCEEECCCC-CCCccCh
Confidence 88777778888888888886 5666654
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=1e-16 Score=151.70 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-h
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-A 80 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~ 80 (309)
+++++|++|++++| .++.+|.+ ++++++|++|++++|.+. ...+..+..+++|+.|++..+... .
T Consensus 275 ~~l~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 275 HCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANKFE------------NLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCTTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCS------------BGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ccccCCCEEeccCC-ccCCCChh-hcccccCCEEECccCCcC------------cCchhhhhccCcCCEEECCCCCcccc
Confidence 44566666666666 66666665 566666666666666664 333455666777777777544322 1
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeec--ccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcc
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLS--VFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH 158 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 158 (309)
++. ..... +++|+.|+++++. +.... ...+..+++|+.|+++++ .+..+...... .+++|+
T Consensus 341 ~~~-~~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~ 403 (606)
T 3t6q_A 341 LGT-GCLEN----LENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFK----------ECPQLE 403 (606)
T ss_dssp CCS-STTTT----CTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTT----------TCTTCS
T ss_pred cch-hhhhc----cCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhc----------CCccCC
Confidence 111 00111 3467777777643 33332 234566777777777763 45555444333 456666
Q ss_pred eEEEeCceecccC---ccCCCCCccEEEEEcCc
Q 035891 159 KVSIWGSKLRHVT---WLILAPNLKHIEVYNCR 188 (309)
Q Consensus 159 ~L~l~~c~l~~l~---~l~~l~~L~~L~l~~c~ 188 (309)
.|++++|.+.... .+..+++|++|++++|.
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 6666666333321 24556666666666653
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=4.7e-17 Score=143.50 Aligned_cols=205 Identities=20% Similarity=0.225 Sum_probs=117.5
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc--------cccCC-cccchhhhhccCCCceE
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS--------ILFGG-SLVLVEELLGLERLNVL 71 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~--------~l~~~-~~~~~~~l~~L~~L~~L 71 (309)
++++++|++|++++| .++.+|. +.++++|++|++++|.+...+.-. ++... ....+..+..+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 467889999999999 8888874 889999999999998887554310 11111 12223346666777777
Q ss_pred EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891 72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRET 151 (309)
Q Consensus 72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (309)
++..+....+..+.. +++|+.|++++|. +..++ .+..+++|+.|++.++ .+..+.. ..
T Consensus 161 ~l~~~~~~~~~~~~~-------l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~--------- 218 (347)
T 4fmz_A 161 TVTESKVKDVTPIAN-------LTDLYSLSLNYNQ-IEDIS--PLASLTSLHYFTAYVN-QITDITP--VA--------- 218 (347)
T ss_dssp ECCSSCCCCCGGGGG-------CTTCSEEECTTSC-CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GG---------
T ss_pred EecCCCcCCchhhcc-------CCCCCEEEccCCc-ccccc--cccCCCccceeecccC-CCCCCch--hh---------
Confidence 665544443333221 3467777777753 33442 2556667777777663 3443332 11
Q ss_pred ccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891 152 HGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY 231 (309)
Q Consensus 152 ~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 231 (309)
.+++|+.|++++|++..++.+..+++|++|++++| .++.+ ..+..+++|++|++++| .++.++
T Consensus 219 -~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 219 -NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDI--------------NAVKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp -GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSS-CCCCCG
T ss_pred -cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCC--------------hhHhcCCCcCEEEccCC-ccCCCh
Confidence 56667777777665555555566666777777665 23333 12344555555555554 344432
Q ss_pred CCccCCCCccEEeecCc
Q 035891 232 PKALPFPHLKELEVNLC 248 (309)
Q Consensus 232 ~~~~~~~~L~~L~i~~C 248 (309)
....+++|+.|++++|
T Consensus 282 -~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 282 -VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp -GGGGCTTCSEEECCSS
T ss_pred -hhcCCCCCCEEECcCC
Confidence 1234455555555554
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=4.9e-17 Score=153.82 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=137.4
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC--cccchhhhhccCCC
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG--SLVLVEELLGLERL 68 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~L 68 (309)
|+++.+|++|++++| .+..+|...++++++|++|++++|.+..+++.+ ++... ....+..++.+++|
T Consensus 95 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 95 FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 456778888888887 777776665678888888888888777655432 11111 12233456677777
Q ss_pred ceEEEEEecchhhhhhcCCcCcc------------ccC---------------------CCcCeEEEecCCCCCeecccC
Q 035891 69 NVLTITLQSFAALHRLLTSPSLQ------------SIF---------------------SNTPSLCLRNCHSLSSLSVFT 115 (309)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~l~------------~~l---------------------~~L~~L~l~~~~~l~~~~~~~ 115 (309)
+.|+++.+....+. ......+. ... ++|+.|+++++. +... ..
T Consensus 174 ~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~--~~ 249 (597)
T 3oja_B 174 QNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT--AW 249 (597)
T ss_dssp CEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCC--GG
T ss_pred cEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCC--hh
Confidence 77777655443221 00000000 001 124444444422 2222 34
Q ss_pred ccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCCccEEEEEcCccccccc
Q 035891 116 LASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEII 194 (309)
Q Consensus 116 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~ 194 (309)
+..+++|+.|++++ +.+..+....+. .+++|+.|++++|.+..++ ....+|+|++|++++|. +..++
T Consensus 250 l~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~ 317 (597)
T 3oja_B 250 LLNYPGLVEVDLSY-NELEKIMYHPFV----------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVE 317 (597)
T ss_dssp GGGCTTCSEEECCS-SCCCEEESGGGT----------TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCG
T ss_pred hccCCCCCEEECCC-CccCCCCHHHhc----------CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccC
Confidence 56677888888887 466666554444 6889999999988666665 34568899999998874 44554
Q ss_pred cccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcc
Q 035891 195 SLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCP 249 (309)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~ 249 (309)
..+..+++|++|+++++ .+..++ ...+++|+.|++++++
T Consensus 318 -------------~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 318 -------------RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -------------GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred -------------cccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 35678999999999996 577665 4578999999999865
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=5.1e-17 Score=143.30 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=131.6
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
++++++|++|++++|..+..++. +..+++|++|++++|.+.. . ..+..+++|+.|+++.+....
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-------------~-~~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-------------V-TPIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-------------C-GGGGGCTTCSEEECTTSCCCC
T ss_pred hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-------------c-hhhccCCCCCEEEccCCcccc
Confidence 35788999999999955555554 8999999999999998852 1 127778888888886655544
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV 160 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L 160 (309)
+..+.. +++|+.++++++. +...+ .+..+++|+.|++++| .+..++. .. .+++|+.|
T Consensus 192 ~~~~~~-------l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~n-~l~~~~~--~~----------~l~~L~~L 248 (347)
T 4fmz_A 192 ISPLAS-------LTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGNN-KITDLSP--LA----------NLSQLTWL 248 (347)
T ss_dssp CGGGGG-------CTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GT----------TCTTCCEE
T ss_pred cccccC-------CCccceeecccCC-CCCCc--hhhcCCcCCEEEccCC-ccCCCcc--hh----------cCCCCCEE
Confidence 443222 3367888887753 33332 2667778888888774 4555443 22 67788888
Q ss_pred EEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC-ccCCCC
Q 035891 161 SIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPH 239 (309)
Q Consensus 161 ~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~ 239 (309)
++++|.+..++.+..+++|++|++++| .++++ ..+..+++|+.|++++| .++..... ...+++
T Consensus 249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 249 EIGTNQISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTN 312 (347)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTT
T ss_pred ECCCCccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCC-cCCCcChhHhhcccc
Confidence 888776666666677778888888776 34443 23556777777777776 34443322 336777
Q ss_pred ccEEeecCcccCCCC
Q 035891 240 LKELEVNLCPKLEKL 254 (309)
Q Consensus 240 L~~L~i~~C~~L~~l 254 (309)
|+.|++++|+ ++.+
T Consensus 313 L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 313 LTTLFLSQNH-ITDI 326 (347)
T ss_dssp CSEEECCSSS-CCCC
T ss_pred CCEEEccCCc-cccc
Confidence 7777777774 5444
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=1.1e-16 Score=149.80 Aligned_cols=42 Identities=33% Similarity=0.369 Sum_probs=26.5
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCC
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSS 43 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 43 (309)
|+++++||+|++++| .+..++.+.++++++|++|++++|.+.
T Consensus 46 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 46 LRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp TSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred hhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccC
Confidence 345666666666666 666655444666666666666666665
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=1.6e-16 Score=150.46 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=35.6
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS 77 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~ 77 (309)
|+++++||+|++++| .+..++.+.++++++|++|++++|.+. ...+..++.+++|++|+++.+.
T Consensus 53 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 53 FSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLI------------FMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp STTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCS------------EECTTTTSSCTTCCEEECTTSC
T ss_pred hccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCccc------------ccChhhhcccccccEeeccccC
Confidence 345666666666666 555543333666666666666666664 2233445555555555554333
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=2.6e-16 Score=144.39 Aligned_cols=230 Identities=22% Similarity=0.296 Sum_probs=116.0
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCC--------ccccCCcccchhhhhccCCCceEEE
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESD--------SILFGGSLVLVEELLGLERLNVLTI 73 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~--------~~l~~~~~~~~~~l~~L~~L~~L~l 73 (309)
+.+.+|++|++++| .++.+|. ++++++|++|++++|.+...++- .++..........+..+++|+.|++
T Consensus 65 ~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 141 (466)
T 1o6v_A 65 EYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 141 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred hhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEEC
Confidence 34667777777777 6666665 66777777777777766544320 0111111111223777888888888
Q ss_pred EEecchhhhhhcCCcCcc--------------ccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcC
Q 035891 74 TLQSFAALHRLLTSPSLQ--------------SIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEID 139 (309)
Q Consensus 74 ~~~~~~~l~~~~~~~~l~--------------~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 139 (309)
+.+....++.+.....++ +.+++|+.|+++++. +..+ ..+..+++|+.|+++++ .+..+..
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~- 216 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI--SVLAKLTNLESLIATNN-QISDITP- 216 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCCCGG-
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC--hhhccCCCCCEEEecCC-ccccccc-
Confidence 777665544332221110 013344444444432 2222 12344455555555542 2222211
Q ss_pred ccCcccccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCC--------cCcccccCCc
Q 035891 140 YAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGE--------VPSEEMQNLF 211 (309)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~--------~~~~~~~~~~ 211 (309)
. ..+++|+.|++++|.+..++.+..+++|++|++++|. +..+.+...... ........+.
T Consensus 217 -~----------~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 284 (466)
T 1o6v_A 217 -L----------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISPLA 284 (466)
T ss_dssp -G----------GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGT
T ss_pred -c----------cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCcccccc
Confidence 1 1455666666666655555455556666666666553 222211000000 0000001255
Q ss_pred cCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCC
Q 035891 212 PFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKL 254 (309)
Q Consensus 212 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~l 254 (309)
.+++|++|+++++ .++.++. ...+++|+.|++++| ++..+
T Consensus 285 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~ 324 (466)
T 1o6v_A 285 GLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDI 324 (466)
T ss_dssp TCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCC
T ss_pred CCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCc
Confidence 6777888888775 5655543 447788888888877 44443
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=2.8e-17 Score=156.57 Aligned_cols=224 Identities=16% Similarity=0.152 Sum_probs=140.4
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC-CCCccCCccccCCcc-cchhhhhcc------CCCceEEEE
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG-SSKQESDSILFGGSL-VLVEELLGL------ERLNVLTIT 74 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~l~~~~~-~~~~~l~~L------~~L~~L~l~ 74 (309)
++++|++|++++|.....+|.. ++++++|++|++++|. +. . .++..++.+ ++|+.|+++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~------------~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS------------GEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSC------------HHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred ccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCc------------cccchHHHHhhhccccCCCCCEEECC
Confidence 8999999999999445678987 9999999999999998 65 4 567777776 899999988
Q ss_pred EecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccc
Q 035891 75 LQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGF 154 (309)
Q Consensus 75 ~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (309)
.+....++....... +++|+.|+++++.....++ .+..+++|+.|++++ +.+..++..+. .+
T Consensus 314 ~n~l~~ip~~~~l~~----l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~-N~l~~lp~~l~-----------~l 375 (636)
T 4eco_A 314 YNNLKTFPVETSLQK----MKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY-NQITEIPANFC-----------GF 375 (636)
T ss_dssp SSCCSSCCCHHHHTT----CTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS-SEEEECCTTSE-----------EE
T ss_pred CCcCCccCchhhhcc----CCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC-CccccccHhhh-----------hh
Confidence 776665543001112 3368888888854332665 677788888888887 45555554433 56
Q ss_pred cC-cceEEEeCceecccCc-cCC--CCCccEEEEEcCccccccccccc-------cC-C-----cCc---ccc--cCCcc
Q 035891 155 FS-LHKVSIWGSKLRHVTW-LIL--APNLKHIEVYNCRYLDEIISLEK-------LG-E-----VPS---EEM--QNLFP 212 (309)
Q Consensus 155 ~~-L~~L~l~~c~l~~l~~-l~~--l~~L~~L~l~~c~~l~~~~~~~~-------~~-~-----~~~---~~~--~~~~~ 212 (309)
++ |+.|++++|.+..+|. +.. +++|++|++++|.....++.... .. . ... ... .....
T Consensus 376 ~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 66 7777777775555552 222 33677777776643322211000 00 0 000 000 11234
Q ss_pred CCccceeeccccccccccCCCccCC--------CCccEEeecCcccCCCCCCCCC
Q 035891 213 FARLESLSLYALGNLRSIYPKALPF--------PHLKELEVNLCPKLEKLPFDCT 259 (309)
Q Consensus 213 ~~~L~~L~L~~~~~L~~l~~~~~~~--------~~L~~L~i~~C~~L~~lp~~~~ 259 (309)
+++|++|+++++ .++.++...+.. ++|+.|++++| +++.+|....
T Consensus 456 l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 508 (636)
T 4eco_A 456 GSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR 508 (636)
T ss_dssp TCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred CCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhh
Confidence 677777777774 566666554422 27777777776 5666775543
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=6.2e-17 Score=142.03 Aligned_cols=216 Identities=16% Similarity=0.187 Sum_probs=145.1
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc-------cccCC--cccchhhhhccCCCceE
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS-------ILFGG--SLVLVEELLGLERLNVL 71 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-------~l~~~--~~~~~~~l~~L~~L~~L 71 (309)
|+++.+|++|++++| .++.++.+.++++++|++|++++|.+..++..+ ++... .......+..+++|+.|
T Consensus 74 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 74 FKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp TTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred hhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 567899999999999 888874444999999999999999987665532 11111 11112235666667776
Q ss_pred EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891 72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRET 151 (309)
Q Consensus 72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (309)
++..+.......... .+.. + +|+.|+++++. +..++. .+ .++|+.|++++ +.+..++.....
T Consensus 153 ~l~~n~l~~~~~~~~--~~~~-l-~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~-n~i~~~~~~~l~--------- 214 (332)
T 2ft3_A 153 EMGGNPLENSGFEPG--AFDG-L-KLNYLRISEAK-LTGIPK-DL--PETLNELHLDH-NKIQAIELEDLL--------- 214 (332)
T ss_dssp ECCSCCCBGGGSCTT--SSCS-C-CCSCCBCCSSB-CSSCCS-SS--CSSCSCCBCCS-SCCCCCCTTSST---------
T ss_pred ECCCCccccCCCCcc--cccC-C-ccCEEECcCCC-CCccCc-cc--cCCCCEEECCC-CcCCccCHHHhc---------
Confidence 665444332111111 0110 1 46666666643 344432 12 25777777777 456665544443
Q ss_pred ccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc
Q 035891 152 HGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS 229 (309)
Q Consensus 152 ~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 229 (309)
.+++|+.|++++|++..++ .+..+++|++|++++| .++.++ ..+..+++|++|+++++ .++.
T Consensus 215 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp-------------~~l~~l~~L~~L~l~~N-~l~~ 278 (332)
T 2ft3_A 215 -RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVP-------------AGLPDLKLLQVVYLHTN-NITK 278 (332)
T ss_dssp -TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCC-------------TTGGGCTTCCEEECCSS-CCCB
T ss_pred -CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecC-------------hhhhcCccCCEEECCCC-CCCc
Confidence 7899999999999777765 4778999999999988 455665 45788999999999995 7888
Q ss_pred cCCCcc-------CCCCccEEeecCcccC
Q 035891 230 IYPKAL-------PFPHLKELEVNLCPKL 251 (309)
Q Consensus 230 l~~~~~-------~~~~L~~L~i~~C~~L 251 (309)
++...+ .+++|+.|++.++|-.
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhHccccccccccccccceEeecCccc
Confidence 876543 2578999999998643
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=4.7e-17 Score=154.03 Aligned_cols=222 Identities=16% Similarity=0.124 Sum_probs=144.0
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
++.+|++|++++|..+..+ . ++.+++|++|++++|.+... ...+..+..+++|+.|+++.+....++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~~----------~~~~~~~~~~~~L~~L~L~~n~l~~~~ 392 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRNALSFS----------GCCSYSDLGTNSLRHLDLSFNGAIIMS 392 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSSCEEEE----------EECCHHHHCCSCCCEEECCSCSEEEEC
T ss_pred CCCccceeeccCCcCccch--h-hccCCCCCEEECcCCccCCC----------cchhhhhccCCcccEeECCCCccccch
Confidence 5678888888888434334 2 67888888888888877411 113567778888888888766544443
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
. .... +++|+.|+++++......+...+..+++|+.|++++| .+......... .+++|+.|++
T Consensus 393 ~--~~~~----l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~~L~l 455 (606)
T 3vq2_A 393 A--NFMG----LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFL----------GLTSLNTLKM 455 (606)
T ss_dssp C--CCTT----CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS-CCEECCTTTTT----------TCTTCCEEEC
T ss_pred h--hccC----CCCCCeeECCCCccCCccChhhhhccccCCEEECcCC-CCCccchhhhc----------CCCCCCEEEC
Confidence 1 1112 4468888888764333332235677788888888875 45544433333 6788888888
Q ss_pred eCceecc--cC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc-CCCccCCC
Q 035891 163 WGSKLRH--VT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI-YPKALPFP 238 (309)
Q Consensus 163 ~~c~l~~--l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~ 238 (309)
++|.+.. +| .++.+++|++|++++|. ++.+++ ..+..+++|++|+++++ .+..+ +.....++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW------------GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY 521 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCc-CCccCh------------hhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence 8885544 33 46677888888888774 444432 45677888888888886 45554 44445778
Q ss_pred CccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891 239 HLKELEVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 239 ~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
+|+.|++++| +++.+|......+..++.+.
T Consensus 522 ~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 522 SLSTLDCSFN-RIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred cCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence 8888888887 47777776444433455544
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=9.4e-17 Score=137.17 Aligned_cols=198 Identities=17% Similarity=0.248 Sum_probs=108.3
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
+|++|++++| .++.++...+.++++|++|++++|.+. ......+..+++|+.|+++.+....+..-
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 94 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ------------TIEDGAYQSLSHLSTLILTGNPIQSLALG- 94 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCC------------EECTTTTTTCTTCCEEECTTCCCCEECTT-
T ss_pred CccEEECCCC-cccccCHhHhccccCCcEEECCCCcCC------------ccCHHHccCCcCCCEEECCCCccCccChh-
Confidence 4777777777 677666544677777777777777664 23334566677777777654443322210
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEE-cCccCcccccCCCcccccCcceEEEeC
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEME-IDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
.... +++|+.|+++++. +..++...+..+++|+.|++++ +.+..+. ..... .+++|+.|++++
T Consensus 95 ~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~----------~l~~L~~L~Ls~ 158 (276)
T 2z62_A 95 AFSG----LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFS----------NLTNLEHLDLSS 158 (276)
T ss_dssp TTTT----CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGG----------GCTTCCEEECCS
T ss_pred hhcC----CccccEEECCCCC-ccccCchhcccCCCCCEEECcC-CccceecCchhhc----------cCCCCCEEECCC
Confidence 0111 3357777766643 3344323456666777777766 3444422 12222 566777777776
Q ss_pred ceecccC--ccCCCCCcc----EEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CC
Q 035891 165 SKLRHVT--WLILAPNLK----HIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PF 237 (309)
Q Consensus 165 c~l~~l~--~l~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~ 237 (309)
|++..++ .+..+++|+ +|+++++ .++.+. .......+|+.|+++++ .++.++...+ .+
T Consensus 159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~-------------~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l 223 (276)
T 2z62_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQ-------------PGAFKEIRLKELALDTN-QLKSVPDGIFDRL 223 (276)
T ss_dssp SCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEEC-------------TTSSCSCCEEEEECCSS-CCSCCCTTTTTTC
T ss_pred CCCCcCCHHHhhhhhhccccceeeecCCC-cccccC-------------ccccCCCcccEEECCCC-ceeecCHhHhccc
Confidence 6544443 222333333 5666554 233333 12223346777777764 4666665443 56
Q ss_pred CCccEEeecCc
Q 035891 238 PHLKELEVNLC 248 (309)
Q Consensus 238 ~~L~~L~i~~C 248 (309)
++|+.|+++++
T Consensus 224 ~~L~~L~l~~N 234 (276)
T 2z62_A 224 TSLQKIWLHTN 234 (276)
T ss_dssp CSCCEEECCSS
T ss_pred ccccEEEccCC
Confidence 77777777654
No 41
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=8e-16 Score=135.99 Aligned_cols=209 Identities=15% Similarity=0.156 Sum_probs=130.6
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEE-EEecchhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTI-TLQSFAALH 82 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l-~~~~~~~l~ 82 (309)
.++++|++++| .++.+|.+++.+|++|++|++++|.+.. .++ ..+.++++++.+.. ..+....++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~------------~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLE------------VIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCC------------EECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCC------------ccChhHhhcchhhhhhhcccCCcccccC
Confidence 46889999998 8999988768899999999999998752 222 23456666655433 223222221
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.- .+.. +++|+.|+++++ .+..++...+....++..+++.+++.+..++...+.. ....++.|++
T Consensus 97 ~~----~f~~-l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~---------~~~~l~~L~L 161 (350)
T 4ay9_X 97 PE----AFQN-LPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG---------LSFESVILWL 161 (350)
T ss_dssp TT----SBCC-CTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT---------SBSSCEEEEC
T ss_pred ch----hhhh-cccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh---------cchhhhhhcc
Confidence 10 0111 346777777764 3444433333344456667776666777776544331 2345777777
Q ss_pred eCceecccCc-cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCcc
Q 035891 163 WGSKLRHVTW-LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLK 241 (309)
Q Consensus 163 ~~c~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~ 241 (309)
++|+++.++. ....++|++|.+.+++.++.++. ..+..+++|++|+++++ ++++++.. .+..|+
T Consensus 162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~------------~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~ 226 (350)
T 4ay9_X 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN------------DVFHGASGPVILDISRT-RIHSLPSY--GLENLK 226 (350)
T ss_dssp CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT------------TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCC
T ss_pred ccccccCCChhhccccchhHHhhccCCcccCCCH------------HHhccCcccchhhcCCC-CcCccChh--hhccch
Confidence 7776666652 22345677777777667776653 34567777888888774 67777653 356777
Q ss_pred EEeecCcccCCCCCC
Q 035891 242 ELEVNLCPKLEKLPF 256 (309)
Q Consensus 242 ~L~i~~C~~L~~lp~ 256 (309)
.|.+.+|.+++.+|.
T Consensus 227 ~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 227 KLRARSTYNLKKLPT 241 (350)
T ss_dssp EEECTTCTTCCCCCC
T ss_pred HhhhccCCCcCcCCC
Confidence 777777777777774
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=4.3e-16 Score=133.70 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=156.0
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS 87 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~ 87 (309)
++++.+++ .++.+|.+ -.++|++|++++|.+. ......+..+++|+.|+++.+....+... ..
T Consensus 14 ~~~~c~~~-~l~~ip~~---~~~~l~~L~l~~n~i~------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 76 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVG---IPAASQRIFLHGNRIS------------HVPAASFRACRNLTILWLHSNVLARIDAA-AF 76 (285)
T ss_dssp CEEECCSS-CCSSCCTT---CCTTCSEEECTTSCCC------------EECTTTTTTCTTCCEEECCSSCCCEECTT-TT
T ss_pred eEEEcCcC-CcccCCcC---CCCCceEEEeeCCcCC------------ccCHHHcccCCCCCEEECCCCccceeCHh-hc
Confidence 67888888 89999975 3579999999999996 44445688999999999986655443210 11
Q ss_pred cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891 88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL 167 (309)
Q Consensus 88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l 167 (309)
.. +++|+.|+++++..+..++...+..+++|+.|++++ +.+..++..... .+++|++|++++|.+
T Consensus 77 ~~----l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 77 TG----LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR-CGLQELGPGLFR----------GLAALQYLYLQDNAL 141 (285)
T ss_dssp TT----CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred CC----ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC-CcCCEECHhHhh----------CCcCCCEEECCCCcc
Confidence 12 457999999997767777556788899999999998 467766555544 789999999999977
Q ss_pred cccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc-CCCccCCCCccEEe
Q 035891 168 RHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI-YPKALPFPHLKELE 244 (309)
Q Consensus 168 ~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~~L~~L~ 244 (309)
..++ .+..+++|++|++++| .++.++. ..+..+++|++|+++++ .++.+ +.....+++|+.|+
T Consensus 142 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 142 QALPDDTFRDLGNLTHLFLHGN-RISSVPE------------RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred cccCHhHhccCCCccEEECCCC-cccccCH------------HHhcCccccCEEECCCC-cccccCHhHccCcccccEee
Confidence 7776 3678999999999987 4555543 35778999999999996 57766 44455899999999
Q ss_pred ecCcccCCCCCC
Q 035891 245 VNLCPKLEKLPF 256 (309)
Q Consensus 245 i~~C~~L~~lp~ 256 (309)
+++| +++.+|.
T Consensus 208 l~~n-~l~~~~~ 218 (285)
T 1ozn_A 208 LFAN-NLSALPT 218 (285)
T ss_dssp CCSS-CCSCCCH
T ss_pred CCCC-cCCcCCH
Confidence 9997 6777663
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.3e-16 Score=131.93 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=141.7
Q ss_pred CCCCCCCcEEecCCCcC-CCCCchhhhcCCCCCceEEecc-cCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891 1 LKYLVNLKCLNLEYTYR-IYKIPGQVISNLKMLEALRMFK-CGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF 78 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~-l~~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~ 78 (309)
|+++++|++|++++| . ++.+|.+.+.++++|++|++++ |.+. ......+..+++|+.|++..+..
T Consensus 51 ~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~------------~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 51 FSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLT------------YIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp TTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCC------------EECTTSEECCTTCCEEEEEEECC
T ss_pred ccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCee------------EcCHHHhCCCCCCCEEeCCCCCC
Confidence 467899999999999 6 8999876689999999999998 7885 33345678899999999998877
Q ss_pred hhhhhhcCCcCccccCCCcC---eEEEecCCCCCeecccCccccccCC-EEEEecCCCCceEEcCccCcccccCCCcccc
Q 035891 79 AALHRLLTSPSLQSIFSNTP---SLCLRNCHSLSSLSVFTLASLRHLE-ALDMTNCKDLEEMEIDYAGEEVKRIRETHGF 154 (309)
Q Consensus 79 ~~l~~~~~~~~l~~~l~~L~---~L~l~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (309)
..++.+.. +++|+ .|+++++..++.++...+..+++|+ .|++++ +.++.++...+. .
T Consensus 118 ~~lp~~~~-------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~-----------~ 178 (239)
T 2xwt_C 118 KMFPDLTK-------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFN-----------G 178 (239)
T ss_dssp CSCCCCTT-------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTT-----------T
T ss_pred cccccccc-------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcC-----------C
Confidence 76655333 23466 9999997678888766788999999 999998 578888876553 3
Q ss_pred cCcceEEEeCc-eecccC--ccCCC-CCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccc
Q 035891 155 FSLHKVSIWGS-KLRHVT--WLILA-PNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGN 226 (309)
Q Consensus 155 ~~L~~L~l~~c-~l~~l~--~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 226 (309)
++|+.|++++| .++.++ .+..+ ++|++|+++++ .++.++ ...|++|+.|.+.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~---------------~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP---------------SKGLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCC---------------CTTCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCC---------------hhHhccCceeeccCccC
Confidence 79999999999 588876 35677 99999999886 455554 23789999999988653
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.68 E-value=8.3e-16 Score=142.87 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=72.1
Q ss_pred cccCcceEEEeCceecccC----ccCCCCCccEEEEEcCccccccccccccC--C-----cCcc--cccCCccC-Cccce
Q 035891 153 GFFSLHKVSIWGSKLRHVT----WLILAPNLKHIEVYNCRYLDEIISLEKLG--E-----VPSE--EMQNLFPF-ARLES 218 (309)
Q Consensus 153 ~~~~L~~L~l~~c~l~~l~----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~--~-----~~~~--~~~~~~~~-~~L~~ 218 (309)
.+++|+.|++++|++..++ .+..+++|++|++++|.....++...... . .... +......+ ++|++
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~ 425 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV 425 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCE
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCE
Confidence 6788888888888555432 35677888888888775333243210000 0 0000 00111223 68999
Q ss_pred eeccccccccccCCCccCCCCccEEeecCcccCCCCCCC-CCCCCCcceEEE
Q 035891 219 LSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFD-CTSGQERKLIIK 269 (309)
Q Consensus 219 L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~~~~~l~~~~ 269 (309)
|+++++ +++.++.....+++|+.|++++| +++.+|.. .... ..++.+.
T Consensus 426 L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~ 474 (520)
T 2z7x_B 426 LDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL-TSLQKIW 474 (520)
T ss_dssp EECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEE
T ss_pred EECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC-CcccEEE
Confidence 999986 78888887779999999999998 78888876 4333 4555554
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.9e-16 Score=154.61 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=145.6
Q ss_pred CCCCCCcEEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCc---------cccC-CcccchhhhhccCC-C
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDS---------ILFG-GSLVLVEELLGLER-L 68 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~-~~~~~~~~l~~L~~-L 68 (309)
..+++|++|++++| .+..+|. . ++++++|++|++++|.+..+| .+ .+.. .-..++..+..+++ |
T Consensus 545 ~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L 621 (876)
T 4ecn_A 545 DTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621 (876)
T ss_dssp TTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTC
T ss_pred cccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccC
Confidence 35568888888888 7888887 5 888888888888888877655 22 1111 11245666788888 8
Q ss_pred ceEEEEEecchhhhhhcCCcCccc-------------------------cCCCcCeEEEecCCCCCeecccCccccccCC
Q 035891 69 NVLTITLQSFAALHRLLTSPSLQS-------------------------IFSNTPSLCLRNCHSLSSLSVFTLASLRHLE 123 (309)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~l~~-------------------------~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 123 (309)
+.|+++.+....++.......... .+++|+.|+++++. +..++...+..+++|+
T Consensus 622 ~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPIS 700 (876)
T ss_dssp CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCS
T ss_pred CEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCC
Confidence 888887776654443222111000 01134444444432 2233322223455666
Q ss_pred EEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccC--CCCCccEEEEEcCccccccccccccC
Q 035891 124 ALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLI--LAPNLKHIEVYNCRYLDEIISLEKLG 200 (309)
Q Consensus 124 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~--~l~~L~~L~l~~c~~l~~~~~~~~~~ 200 (309)
.|++++ +.+..++....... .+....+++|+.|++++|++..+| .+. .+++|+.|++++|. +..++
T Consensus 701 ~L~Ls~-N~L~~ip~~~~~~~---~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp------ 769 (876)
T 4ecn_A 701 TIILSN-NLMTSIPENSLKPK---DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFP------ 769 (876)
T ss_dssp EEECCS-CCCSCCCTTSSSCT---TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCC------
T ss_pred EEECCC-CcCCccChHHhccc---cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccc------
Confidence 666665 34554444332100 000002348888888888666766 333 67888888888774 44443
Q ss_pred CcCcccccCCccCCccceeeccc------cccccccCCCccCCCCccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891 201 EVPSEEMQNLFPFARLESLSLYA------LGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 201 ~~~~~~~~~~~~~~~L~~L~L~~------~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
..+..+++|+.|++++ +.-...++.....+++|+.|++++| ++..+|.... ..++.+.
T Consensus 770 -------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~---~~L~~Ld 833 (876)
T 4ecn_A 770 -------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT---PQLYILD 833 (876)
T ss_dssp -------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---SSSCEEE
T ss_pred -------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc---CCCCEEE
Confidence 4567888899998876 3334556666668889999999988 4577887643 3444443
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=5.9e-17 Score=154.28 Aligned_cols=226 Identities=12% Similarity=0.171 Sum_probs=163.5
Q ss_pred CCCCCCCcEEecCCCcCCCC------------------Cchhhhc--CCCCCceEEecccCCCCccCCccccCCcccchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYK------------------IPGQVIS--NLKMLEALRMFKCGSSKQESDSILFGGSLVLVE 60 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~------------------lp~~~i~--~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 60 (309)
|+++++|++|++++| .++. +|.+ ++ ++++|++|++++|.+. ..++.
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~------------~~~p~ 267 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNL------------TKLPT 267 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTC------------SSCCT
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCC------------ccChH
Confidence 467899999999999 7888 9998 88 9999999999999987 67788
Q ss_pred hhhccCCCceEEEEEec-chh--hhh-hcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCc-
Q 035891 61 ELLGLERLNVLTITLQS-FAA--LHR-LLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLE- 134 (309)
Q Consensus 61 ~l~~L~~L~~L~l~~~~-~~~--l~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~- 134 (309)
.++.+++|+.|+++.+. ... ++. +.....+.. +++|+.|+++++. +..+|. ..+..+++|+.|+++++ .+.
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~-l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N-~l~g 344 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPV-GEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-QLEG 344 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG-GGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSC-CCEE
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc-CCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCC-cCcc
Confidence 89999999999998765 442 443 222100011 2379999999965 456762 15889999999999984 566
Q ss_pred eEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCC-ccEEEEEcCccccccccccccCC-----------
Q 035891 135 EMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPN-LKHIEVYNCRYLDEIISLEKLGE----------- 201 (309)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~-L~~L~l~~c~~l~~~~~~~~~~~----------- 201 (309)
.++ .+. .+++|+.|++++|++..+| .+..+++ |++|++++|. ++.++.......
T Consensus 345 ~ip-~~~-----------~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 345 KLP-AFG-----------SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp ECC-CCE-----------EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred chh-hhC-----------CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence 676 333 7899999999999777776 5777888 9999999885 445543211100
Q ss_pred --cCcccccCCc-------cCCccceeeccccccccccCCCcc-CCCCccEEeecCcccCCCCCCCC
Q 035891 202 --VPSEEMQNLF-------PFARLESLSLYALGNLRSIYPKAL-PFPHLKELEVNLCPKLEKLPFDC 258 (309)
Q Consensus 202 --~~~~~~~~~~-------~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~C~~L~~lp~~~ 258 (309)
........+. .+++|++|+++++ .++.++...+ .+++|++|++++| +++.+|...
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~ 476 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNS 476 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSS
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHH
Confidence 0000001122 4568888888885 6777776555 4888999999887 566777643
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=1.5e-15 Score=142.55 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=71.5
Q ss_pred cccCcceEEEeCceecccC----ccCCCCCccEEEEEcCccccccccccccCC-------cCcc--cccCCccC-Cccce
Q 035891 153 GFFSLHKVSIWGSKLRHVT----WLILAPNLKHIEVYNCRYLDEIISLEKLGE-------VPSE--EMQNLFPF-ARLES 218 (309)
Q Consensus 153 ~~~~L~~L~l~~c~l~~l~----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~-------~~~~--~~~~~~~~-~~L~~ 218 (309)
.+++|+.|++++|+++.++ .+..+++|++|++++|.....++....... .... +......+ ++|++
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~ 454 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV 454 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSE
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCE
Confidence 5778888888877655543 256677888888877643322332110000 0000 00112233 68999
Q ss_pred eeccccccccccCCCccCCCCccEEeecCcccCCCCCCC-CCCCCCcceEEE
Q 035891 219 LSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFD-CTSGQERKLIIK 269 (309)
Q Consensus 219 L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~~~~~l~~~~ 269 (309)
|+++++ +++.++...+.+++|+.|+++++ +++.+|.. .... ..++.+.
T Consensus 455 L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~ 503 (562)
T 3a79_B 455 LDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL-TSLQYIW 503 (562)
T ss_dssp EECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC-TTCCCEE
T ss_pred EECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC-CCCCEEE
Confidence 999986 78889888889999999999997 78888876 4444 4455444
No 48
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=2.2e-16 Score=153.52 Aligned_cols=38 Identities=29% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCC
Q 035891 4 LVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSS 43 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~ 43 (309)
+.+|++|++++| .+. .+|.. ++++++|++|++++|.+.
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred cCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCccc
Confidence 445666666666 444 45554 556666666666665554
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.68 E-value=6.1e-16 Score=141.98 Aligned_cols=146 Identities=21% Similarity=0.277 Sum_probs=76.7
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+++++|++|++++| .+..++. +.++++|++|++++|.+... ..++.+++|+.|+++.+....+
T Consensus 174 ~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~--------------~~~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 174 ANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDI--------------TPLGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCCC
T ss_pred ccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCccccc--------------ccccccCCCCEEECCCCCcccc
Confidence 45666777777776 6666654 66777777777777666421 1145566666666654444333
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS 161 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 161 (309)
+.+.. +++|+.|+++++. +...+ .+..+++|+.|+++++ .+..++. .. .+++|+.|+
T Consensus 237 ~~l~~-------l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~----------~l~~L~~L~ 293 (466)
T 1o6v_A 237 GTLAS-------LTNLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGAN-QISNISP--LA----------GLTALTNLE 293 (466)
T ss_dssp GGGGG-------CTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSS-CCCCCGG--GT----------TCTTCSEEE
T ss_pred hhhhc-------CCCCCEEECCCCc-cccch--hhhcCCCCCEEECCCC-ccCcccc--cc----------CCCccCeEE
Confidence 22221 2346666666543 22222 1445556666666553 3333322 11 455555555
Q ss_pred EeCceecccCccCCCCCccEEEEEcC
Q 035891 162 IWGSKLRHVTWLILAPNLKHIEVYNC 187 (309)
Q Consensus 162 l~~c~l~~l~~l~~l~~L~~L~l~~c 187 (309)
+++|++..++.+..+++|++|++++|
T Consensus 294 L~~n~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 294 LNENQLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp CCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred cCCCcccCchhhcCCCCCCEEECcCC
Confidence 55554444444455555555555555
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.5e-16 Score=133.24 Aligned_cols=178 Identities=20% Similarity=0.219 Sum_probs=138.6
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.+|...+.++++|++|++++|.+. ......+..+++|++|+++.+....++..
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQ------------TLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCS------------CCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccC------------eeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 46999999999 899998766999999999999999986 22223457899999999987665544321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
.... +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++
T Consensus 104 -~~~~----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~----------~l~~L~~L~L~~ 166 (270)
T 2o6q_A 104 -VFDQ----LVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFD----------KLTSLKELRLYN 166 (270)
T ss_dssp -TTTT----CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCS
T ss_pred -Hccc----ccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHcc----------CCcccceeEecC
Confidence 1111 457999999995 45666545678899999999999 578877766554 789999999999
Q ss_pred ceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 165 SKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 165 c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
|.+..++ .+..+++|++|++++| .++.++. ..+..+++|+.|++.+++
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPE------------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSC
T ss_pred CcCcEeChhHhccCCCcCEEECCCC-cCCcCCH------------HHhccccCCCEEEecCCC
Confidence 9777776 3677899999999988 5555543 356789999999999864
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=1.5e-16 Score=150.66 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=100.1
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
++.+|++|++++| .++.+| . + .+++|++|++++|... ... .+..+++|+.|+++.+......
T Consensus 305 ~~~~L~~L~l~~n-~l~~lp-~-~-~l~~L~~L~l~~n~~~------------~~~--~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 305 KHFKWQSLSIIRC-QLKQFP-T-L-DLPFLKSLTLTMNKGS------------ISF--KKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp TTCCCSEEEEESC-CCSSCC-C-C-CCSSCCEEEEESCSSC------------EEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred ccccCCEEEcccc-cCcccc-c-C-CCCccceeeccCCcCc------------cch--hhccCCCCCEEECcCCccCCCc
Confidence 3445555555555 455555 2 3 5556666666555432 111 3445666666666544433221
Q ss_pred ----hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEc-CccCcccccCCCcccccCc
Q 035891 83 ----RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEI-DYAGEEVKRIRETHGFFSL 157 (309)
Q Consensus 83 ----~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~L 157 (309)
.+.. +++|+.|+++++. +..++ ..+..+++|+.|+++++ .+..+.. .... .+++|
T Consensus 367 ~~~~~~~~-------~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~----------~l~~L 426 (606)
T 3vq2_A 367 CCSYSDLG-------TNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHS-TLKRVTEFSAFL----------SLEKL 426 (606)
T ss_dssp ECCHHHHC-------CSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTS-EEESTTTTTTTT----------TCTTC
T ss_pred chhhhhcc-------CCcccEeECCCCc-cccch-hhccCCCCCCeeECCCC-ccCCccChhhhh----------ccccC
Confidence 1111 2256666666643 34444 44556666666666663 2222221 2222 45666
Q ss_pred ceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC-Cc
Q 035891 158 HKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP-KA 234 (309)
Q Consensus 158 ~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~~ 234 (309)
+.|++++|.+... + .+..+++|++|++++|.....+++ ..+..+++|++|++++| .++.++. ..
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 493 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------------NVFANTTNLTFLDLSKC-QLEQISWGVF 493 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH------------HhhccCCCCCEEECCCC-cCCccChhhh
Confidence 6666666633332 2 345566666666666543332221 34556666666666665 4444433 23
Q ss_pred cCCCCccEEeecCc
Q 035891 235 LPFPHLKELEVNLC 248 (309)
Q Consensus 235 ~~~~~L~~L~i~~C 248 (309)
..+++|++|++++|
T Consensus 494 ~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 494 DTLHRLQLLNMSHN 507 (606)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cccccCCEEECCCC
Confidence 35666666666666
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.67 E-value=8.4e-16 Score=140.62 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=114.0
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+++++|++|++++| .++.+| + ++.+++|++|++++|.+..+ .++.+++|+.|+++.+....+
T Consensus 39 ~~l~~L~~L~Ls~n-~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~---------------~~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 39 EQLATLTSLDCHNS-SITDMT-G-IEKLTGLTKLICTSNNITTL---------------DLSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp HHHTTCCEEECCSS-CCCCCT-T-GGGCTTCSEEECCSSCCSCC---------------CCTTCTTCSEEECCSSCCSCC
T ss_pred hHcCCCCEEEccCC-CcccCh-h-hcccCCCCEEEccCCcCCeE---------------ccccCCCCCEEECcCCCCcee
Confidence 45788999999998 888888 4 88999999999999988632 155566666666654443333
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc-----------cccCCC
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE-----------VKRIRE 150 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-----------~~~~~~ 150 (309)
+ ... +++|+.|+++++ .++.++ +..+++|+.|++++ +.++.++......+ ... .
T Consensus 101 ~----~~~----l~~L~~L~L~~N-~l~~l~---~~~l~~L~~L~l~~-N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 101 D----VTP----LTKLTYLNCDTN-KLTKLD---VSQNPLLTYLNCAR-NTLTEIDVSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp C----CTT----CTTCCEEECCSS-CCSCCC---CTTCTTCCEEECTT-SCCSCCCCTTCTTCCEEECTTCSCCCCC--C
T ss_pred e----cCC----CCcCCEEECCCC-cCCeec---CCCCCcCCEEECCC-CccceeccccCCcCCEEECCCCCccccc--c
Confidence 1 111 335666666554 233332 44455555555554 23333321000000 000 0
Q ss_pred cccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891 151 THGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI 230 (309)
Q Consensus 151 ~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l 230 (309)
...+++|+.|++++|+++.++ +..+++|++|++++|. ++.+ .++.+++|++|+++++ .++.+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~-l~~~---------------~l~~l~~L~~L~Ls~N-~l~~i 227 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNN-ITKL---------------DLNQNIQLTFLDCSSN-KLTEI 227 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSC-CSCC---------------CCTTCTTCSEEECCSS-CCSCC
T ss_pred cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCc-CCee---------------ccccCCCCCEEECcCC-ccccc
Confidence 014556666666666555554 5555666666665542 2222 2456677777777774 56666
Q ss_pred CCCccCCCCccEEeecCcccCCCCC
Q 035891 231 YPKALPFPHLKELEVNLCPKLEKLP 255 (309)
Q Consensus 231 ~~~~~~~~~L~~L~i~~C~~L~~lp 255 (309)
+ ...+++|+.|+++++ +++.+|
T Consensus 228 p--~~~l~~L~~L~l~~N-~l~~~~ 249 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVN-PLTELD 249 (457)
T ss_dssp C--CTTCTTCSEEECCSS-CCSCCC
T ss_pred C--ccccCCCCEEEeeCC-cCCCcC
Confidence 5 446677777777776 555555
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=1.7e-16 Score=135.34 Aligned_cols=204 Identities=16% Similarity=0.143 Sum_probs=118.5
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
.+.+|+.|+++++ .++.++. ++.+++|++|++++|.+. . +..+..+++|+.|+++.+....+.
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~l~------------~--~~~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLH------------D--ISALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSCCC------------C--CGGGTTCTTCCEEECTTSCCCCCC
T ss_pred cccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCCCC------------C--chhhcCCCCCCEEECCCCccCccC
Confidence 3567788888887 7777765 677888888888877774 1 235667777777777544433222
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
... ... +++|+.|+++++. +..++...+..+++|+.|+++++ .+..++..... .+++|+.|++
T Consensus 102 ~~~-~~~----l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----------~l~~L~~L~l 164 (272)
T 3rfs_A 102 NGV-FDK----LTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFD----------KLTNLTELDL 164 (272)
T ss_dssp TTT-TTT----CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT----------TCTTCCEEEC
T ss_pred hhH-hcC----CcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhc----------cCccCCEEEC
Confidence 100 011 3357777777643 44444334566677777777763 55555544433 5667777777
Q ss_pred eCceecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCc
Q 035891 163 WGSKLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHL 240 (309)
Q Consensus 163 ~~c~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L 240 (309)
++|++..++. +..+++|++|++++|. ++.++. ..+..+++|++|++.+++ +. ..+|+|
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~l~~N~-~~------~~~~~l 224 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD------------GVFDRLTSLQYIWLHDNP-WD------CTCPGI 224 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT------------TTTTTCTTCCEEECCSSC-BC------CCTTTT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCc-CCccCH------------HHHhCCcCCCEEEccCCC-cc------ccCcHH
Confidence 7775555542 4566777777776653 333332 234566777777777653 21 234556
Q ss_pred cEEeecCcccCCCCCCCCCC
Q 035891 241 KELEVNLCPKLEKLPFDCTS 260 (309)
Q Consensus 241 ~~L~i~~C~~L~~lp~~~~~ 260 (309)
+.+++..+.--..+|.....
T Consensus 225 ~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp HHHHHHHHHTGGGBBCTTSC
T ss_pred HHHHHHHHhCCCcccCcccc
Confidence 66655554333344544433
No 54
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=2.3e-16 Score=153.40 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=136.1
Q ss_pred CCCCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCc-cCCc---------cccC--CcccchhhhhccCCC
Q 035891 2 KYLVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQ-ESDS---------ILFG--GSLVLVEELLGLERL 68 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~-~~~~---------~l~~--~~~~~~~~l~~L~~L 68 (309)
+++++|++|++++| .+. .+|.. ++++++|++|++++|.+... |..+ .+.. .....+..++.+++|
T Consensus 415 ~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 415 SNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 46677888888887 555 56665 77888888888888777622 1111 0110 012344556666666
Q ss_pred ceEEEEEecch-hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc---
Q 035891 69 NVLTITLQSFA-ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE--- 144 (309)
Q Consensus 69 ~~L~l~~~~~~-~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--- 144 (309)
+.|+++.+... .++.+.. . +++|+.|++++|.....+| ..+..+++|+.|+++++.-...+|..+....
T Consensus 493 ~~L~L~~N~l~~~~p~~~~--~----l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIG--R----LENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp CEEECCSSCCCSCCCGGGG--G----CTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred CEEEccCCccCCcCChHHh--c----CCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 66666544433 2222211 1 3357777777754433444 4566677777777776432223332111000
Q ss_pred --------------------------------------------------------cccCCCcccccCcceEEEeCceec
Q 035891 145 --------------------------------------------------------VKRIRETHGFFSLHKVSIWGSKLR 168 (309)
Q Consensus 145 --------------------------------------------------------~~~~~~~~~~~~L~~L~l~~c~l~ 168 (309)
+..+.....+++|+.|++++|++.
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 000001113567788888888544
Q ss_pred -ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeec
Q 035891 169 -HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVN 246 (309)
Q Consensus 169 -~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~ 246 (309)
.+| .++.+++|+.|++++|.....++ ..++.+++|++|+++++.--..+|.....+++|+.|+++
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-------------~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIP-------------DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCC-------------GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCC-------------hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 344 46777888888888775444554 467788888888888864334667666688888888888
Q ss_pred CcccCCCCCCC
Q 035891 247 LCPKLEKLPFD 257 (309)
Q Consensus 247 ~C~~L~~lp~~ 257 (309)
+|+--..+|..
T Consensus 713 ~N~l~g~iP~~ 723 (768)
T 3rgz_A 713 NNNLSGPIPEM 723 (768)
T ss_dssp SSEEEEECCSS
T ss_pred CCcccccCCCc
Confidence 87544456654
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=1.9e-15 Score=148.40 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=25.9
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCc
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQ 45 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 45 (309)
|+++++||+|++++|..+..++.+.++++++|++|++++|.+...
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 345666666666666334445333366666666666666666543
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=3.7e-16 Score=152.56 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=144.7
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC-CCCccCCccccCCcc-cchhhhhccC-------CCceEEE
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG-SSKQESDSILFGGSL-VLVEELLGLE-------RLNVLTI 73 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~l~~~~~-~~~~~l~~L~-------~L~~L~l 73 (309)
++++|++|++++|.....+|.. +++|++|++|++++|. +. . .++..++.+. +|+.|++
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~ls------------g~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGIS------------AAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSC------------HHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcc------------cccchHHHHhhhhcccccCCccEEEe
Confidence 8999999999999446679986 9999999999999998 64 3 4555555554 8888888
Q ss_pred EEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCccc
Q 035891 74 TLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHG 153 (309)
Q Consensus 74 ~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (309)
+.+....++.+..... +++|+.|+++++. +..++ .+..+++|+.|++++ +.+..++..+. .
T Consensus 556 s~N~L~~ip~~~~l~~----L~~L~~L~Ls~N~-l~~lp--~~~~L~~L~~L~Ls~-N~l~~lp~~l~-----------~ 616 (876)
T 4ecn_A 556 GYNNLEEFPASASLQK----MVKLGLLDCVHNK-VRHLE--AFGTNVKLTDLKLDY-NQIEEIPEDFC-----------A 616 (876)
T ss_dssp CSSCCCBCCCHHHHTT----CTTCCEEECTTSC-CCBCC--CCCTTSEESEEECCS-SCCSCCCTTSC-----------E
T ss_pred eCCcCCccCChhhhhc----CCCCCEEECCCCC-cccch--hhcCCCcceEEECcC-CccccchHHHh-----------h
Confidence 7766665544101112 3368888888754 34554 677778888888887 45555554433 5
Q ss_pred ccC-cceEEEeCceecccCc-cCCC--CCccEEEEEcCcccccccccccc-C-----C-----cCcc---cc-c-CCccC
Q 035891 154 FFS-LHKVSIWGSKLRHVTW-LILA--PNLKHIEVYNCRYLDEIISLEKL-G-----E-----VPSE---EM-Q-NLFPF 213 (309)
Q Consensus 154 ~~~-L~~L~l~~c~l~~l~~-l~~l--~~L~~L~l~~c~~l~~~~~~~~~-~-----~-----~~~~---~~-~-~~~~~ 213 (309)
+++ |+.|++++|.+..+|. +..+ ++|+.|++++|.....++..... . . .... .. . ....+
T Consensus 617 l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l 696 (876)
T 4ecn_A 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696 (876)
T ss_dssp ECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT
T ss_pred ccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC
Confidence 666 7777777775555552 2222 34777777766433222110000 0 0 0000 00 1 12356
Q ss_pred CccceeeccccccccccCCCccCC--------CCccEEeecCcccCCCCCCCCC--CCCCcceEEE
Q 035891 214 ARLESLSLYALGNLRSIYPKALPF--------PHLKELEVNLCPKLEKLPFDCT--SGQERKLIIK 269 (309)
Q Consensus 214 ~~L~~L~L~~~~~L~~l~~~~~~~--------~~L~~L~i~~C~~L~~lp~~~~--~~~~~l~~~~ 269 (309)
++|+.|+++++ .++.++...+.. ++|+.|++++| ++..+|.... .. ..++.+.
T Consensus 697 ~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l-~~L~~L~ 759 (876)
T 4ecn_A 697 SPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTL-PYLSNMD 759 (876)
T ss_dssp CCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTC-TTCCEEE
T ss_pred CCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccC-CCcCEEE
Confidence 78888888875 677777655432 27888888887 6777776554 33 4444443
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=2.2e-16 Score=137.34 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=128.6
Q ss_pred CcEEecCCCcCCCC--Cchhhhc-------CCCCCceEEecccCCCCccCCccccCCcccchhhh--hccCCCceEEEEE
Q 035891 7 LKCLNLEYTYRIYK--IPGQVIS-------NLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL--LGLERLNVLTITL 75 (309)
Q Consensus 7 Lr~L~l~~~~~l~~--lp~~~i~-------~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l--~~L~~L~~L~l~~ 75 (309)
|++|+++++ .+.. +|.. +. ++++|++|++++|.+. ...+..+ ..+++|+.|+++.
T Consensus 65 L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~~~l~~L~~L~Ls~ 130 (312)
T 1wwl_A 65 IKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENLEVT------------GTAPPPLLEATGPDLNILNLRN 130 (312)
T ss_dssp HHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCB------------SCCCCCSSSCCSCCCSEEEEES
T ss_pred Hhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCCccc------------chhHHHHHHhcCCCccEEEccC
Confidence 566777777 5543 5654 44 6778888888887775 3444444 6777888888876
Q ss_pred ecchhhhhhcC-CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE--EcCc-cCcccccCCCc
Q 035891 76 QSFAALHRLLT-SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM--EIDY-AGEEVKRIRET 151 (309)
Q Consensus 76 ~~~~~l~~~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l--~~~~-~~~~~~~~~~~ 151 (309)
+.....+.... .... .+++|+.|+++++. +..++...+..+++|+.|+++++.-...+ +... ..
T Consensus 131 N~l~~~~~~~~~l~~~--~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--------- 198 (312)
T 1wwl_A 131 VSWATRDAWLAELQQW--LKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL--------- 198 (312)
T ss_dssp CBCSSSSSHHHHHHTT--CCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT---------
T ss_pred CCCcchhHHHHHHHHh--hcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc---------
Confidence 66554321111 0000 01368888888743 45554356677788888888875322221 1111 12
Q ss_pred ccccCcceEEEeCceecccC-----ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccc
Q 035891 152 HGFFSLHKVSIWGSKLRHVT-----WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGN 226 (309)
Q Consensus 152 ~~~~~L~~L~l~~c~l~~l~-----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 226 (309)
.+++|++|++++|++..++ ....+++|++|++++|. ++..++. .....+++|++|+++++ .
T Consensus 199 -~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~~l~~L~~L~Ls~N-~ 264 (312)
T 1wwl_A 199 -KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA-----------PSCDWPSQLNSLNLSFT-G 264 (312)
T ss_dssp -SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC-----------SCCCCCTTCCEEECTTS-C
T ss_pred -cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch-----------hhhhhcCCCCEEECCCC-c
Confidence 5778888888887555332 12356788888887764 3332210 23345678888888875 5
Q ss_pred ccccCCCccCCCCccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891 227 LRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 227 L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
++.++.... ++|++|+++++ +++.+|. .... ..++.+.
T Consensus 265 l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l-~~L~~L~ 302 (312)
T 1wwl_A 265 LKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDEL-PQVGNLS 302 (312)
T ss_dssp CSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTS-CEEEEEE
T ss_pred cChhhhhcc--CCceEEECCCC-CCCCChh-HhhC-CCCCEEe
Confidence 677765444 77888888876 6776665 3333 4444443
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=4.3e-16 Score=132.89 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=148.1
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS 87 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~ 87 (309)
..+++.++ .+..+.. ...+++|+.|++.+|.+. .+.+++.+++|+.|+++.+....++.+..
T Consensus 22 ~~l~l~~~-~~~~~~~--~~~l~~L~~L~l~~~~i~--------------~~~~l~~l~~L~~L~l~~n~l~~~~~l~~- 83 (272)
T 3rfs_A 22 IKANLKKK-SVTDAVT--QNELNSIDQIIANNSDIK--------------SVQGIQYLPNVRYLALGGNKLHDISALKE- 83 (272)
T ss_dssp HHHHHTCS-CTTSEEC--HHHHTTCCEEECTTSCCC--------------CCTTGGGCTTCCEEECTTSCCCCCGGGTT-
T ss_pred HHHHhcCc-ccccccc--cccccceeeeeeCCCCcc--------------cccccccCCCCcEEECCCCCCCCchhhcC-
Confidence 34455565 5555544 578999999999999885 23468889999999998766555443332
Q ss_pred cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891 88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL 167 (309)
Q Consensus 88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l 167 (309)
+++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++..... .+++|+.|++++|++
T Consensus 84 ------l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~----------~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 84 ------LTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFD----------KLTNLTYLNLAHNQL 145 (272)
T ss_dssp ------CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred ------CCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhc----------cCCCCCEEECCCCcc
Confidence 447999999996 45666545678899999999998 467777665554 789999999999977
Q ss_pred cccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc-cCCCCccEEe
Q 035891 168 RHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA-LPFPHLKELE 244 (309)
Q Consensus 168 ~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~~~~L~~L~ 244 (309)
..++. +..+++|++|++++|. ++.++. ..+..+++|++|+++++ .++.++... ..+++|+.|+
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQ-LQSLPE------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred CccCHHHhccCccCCEEECCCCC-cCccCH------------HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEE
Confidence 77763 5789999999999984 555542 34678999999999996 687777654 4799999999
Q ss_pred ecCcccC
Q 035891 245 VNLCPKL 251 (309)
Q Consensus 245 i~~C~~L 251 (309)
+++++-.
T Consensus 212 l~~N~~~ 218 (272)
T 3rfs_A 212 LHDNPWD 218 (272)
T ss_dssp CCSSCBC
T ss_pred ccCCCcc
Confidence 9997544
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=1.3e-15 Score=139.32 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=82.0
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCC-------ccccCCc-ccchhhhhccCCCceEEE
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESD-------SILFGGS-LVLVEELLGLERLNVLTI 73 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~-------~~l~~~~-~~~~~~l~~L~~L~~L~l 73 (309)
+++++|++|++++| .++.+| ++.+++|++|++++|.+...+.. .++.... ..+ .++.+++|+.|++
T Consensus 61 ~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l--~~~~l~~L~~L~l 134 (457)
T 3bz5_A 61 EKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL--DVSQNPLLTYLNC 134 (457)
T ss_dssp GGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC--CCTTCTTCCEEEC
T ss_pred cccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee--cCCCCCcCCEEEC
Confidence 45667777777777 677665 56777777777777776532210 0000000 011 1445555555555
Q ss_pred EEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc---------
Q 035891 74 TLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE--------- 144 (309)
Q Consensus 74 ~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--------- 144 (309)
+.+....+. ... +++|+.|+++++.....+ .+..+++|+.|+++++ .++.++......+
T Consensus 135 ~~N~l~~l~----l~~----l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 135 ARNTLTEID----VSH----NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNN 202 (457)
T ss_dssp TTSCCSCCC----CTT----CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSC
T ss_pred CCCccceec----ccc----CCcCCEEECCCCCccccc---ccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCc
Confidence 433332221 111 334555555554433333 2344555556655552 3333321111000
Q ss_pred -cccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCc
Q 035891 145 -VKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCR 188 (309)
Q Consensus 145 -~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~ 188 (309)
.+ . ....+++|+.|++++|++..+| +..+++|++|++++|.
T Consensus 203 l~~-~-~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 203 ITK-L-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CSC-C-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC
T ss_pred CCe-e-ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc
Confidence 00 0 0115667777777777666666 6667777777777663
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=3.4e-16 Score=136.21 Aligned_cols=208 Identities=16% Similarity=0.156 Sum_probs=92.5
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhh-------ccCCCceEEEEEec
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELL-------GLERLNVLTITLQS 77 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~-------~L~~L~~L~l~~~~ 77 (309)
.+|++|++++| .+ .+|.+ +... |++|++++|.+.. ...+..+. .+++|+.|+++.+.
T Consensus 43 ~~L~~l~l~~n-~l-~~p~~-~~~~--L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 43 RSLEYLLKRVD-TE-ADLGQ-FTDI--IKSLSLKRLTVRA-----------ARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EECTTHHHHCC-TT-CCCHH-HHHH--HHHCCCCEEEEEE-----------EECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred CCceeEeeccc-cc-ccHHH-HHHH--HhhcccccccccC-----------CCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 44555566655 44 55554 3322 5555555555521 11222222 45666666665554
Q ss_pred chh-hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCcccc-----ccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891 78 FAA-LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASL-----RHLEALDMTNCKDLEEMEIDYAGEEVKRIRET 151 (309)
Q Consensus 78 ~~~-l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (309)
... .+....... +++|+.|+++++. +...+ ..+..+ ++|+.|++++ +.+..++....+
T Consensus 107 l~~~~~~~~~~~~----l~~L~~L~Ls~N~-l~~~~-~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~--------- 170 (312)
T 1wwl_A 107 VTGTAPPPLLEAT----GPDLNILNLRNVS-WATRD-AWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVR--------- 170 (312)
T ss_dssp CBSCCCCCSSSCC----SCCCSEEEEESCB-CSSSS-SHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCC---------
T ss_pred ccchhHHHHHHhc----CCCccEEEccCCC-Ccchh-HHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhc---------
Confidence 431 111100011 3356666666532 33332 233333 5566666665 344444433332
Q ss_pred ccccCcceEEEeCceecc---c-Cc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 152 HGFFSLHKVSIWGSKLRH---V-TW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 152 ~~~~~L~~L~l~~c~l~~---l-~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
.+++|+.|++++|++.. + +. ...+++|++|++++|. ++.+..... .....+++|++|+++++
T Consensus 171 -~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---------~~~~~l~~L~~L~Ls~N- 238 (312)
T 1wwl_A 171 -VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCS---------ALAAARVQLQGLDLSHN- 238 (312)
T ss_dssp -CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHH---------HHHHTTCCCSEEECTTS-
T ss_pred -cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHH---------HHHhcCCCCCEEECCCC-
Confidence 45566666666553211 1 11 1455666666665552 221110000 11234456666666653
Q ss_pred cccccC-CC-ccCCCCccEEeecCcccCCCCCCC
Q 035891 226 NLRSIY-PK-ALPFPHLKELEVNLCPKLEKLPFD 257 (309)
Q Consensus 226 ~L~~l~-~~-~~~~~~L~~L~i~~C~~L~~lp~~ 257 (309)
.++... .. ...+++|+.|++++| +++.+|..
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~ 271 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG 271 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS
T ss_pred cCCcccchhhhhhcCCCCEEECCCC-ccChhhhh
Confidence 344432 11 123456666666655 44455543
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=4.2e-15 Score=145.94 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCC
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS 42 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 42 (309)
..+|++|++++| .++.++.+.++++++|++|++++|..
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~ 60 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYT 60 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCC
T ss_pred CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCC
Confidence 367888888888 78776443488888888888888854
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=2.1e-15 Score=141.05 Aligned_cols=194 Identities=13% Similarity=0.159 Sum_probs=127.2
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch---hhhhccCCCceEEEEEecchhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV---EELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~---~~l~~L~~L~~L~l~~~~~~~l 81 (309)
.+|++|++++| .+..+|..++..+++|++|++++|.+. ...+ ..++.+++|+.|+++.+....+
T Consensus 310 ~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 310 EKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMV------------EEYLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp TTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCC------------HHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred ccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccc------------cccccchhhhhccccCcEEEccCCccccc
Confidence 46777777777 777788774457888888888888775 3332 2356778888888876655544
Q ss_pred hhhc-CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891 82 HRLL-TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV 160 (309)
Q Consensus 82 ~~~~-~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L 160 (309)
+... .... +++|+.|+++++ .++.++ ..+..+++|+.|+++++ .+..++.. .+++|+.|
T Consensus 377 ~~~~~~~~~----l~~L~~L~Ls~N-~l~~lp-~~~~~~~~L~~L~Ls~N-~l~~l~~~-------------~~~~L~~L 436 (549)
T 2z81_A 377 QKTGEILLT----LKNLTSLDISRN-TFHPMP-DSCQWPEKMRFLNLSST-GIRVVKTC-------------IPQTLEVL 436 (549)
T ss_dssp HHHHHHGGG----CTTCCEEECTTC-CCCCCC-SCCCCCTTCCEEECTTS-CCSCCCTT-------------SCTTCSEE
T ss_pred ccchhhhhc----CCCCCEEECCCC-CCccCC-hhhcccccccEEECCCC-Ccccccch-------------hcCCceEE
Confidence 3210 0111 336888888875 445555 34566777888888874 45544321 34678888
Q ss_pred EEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC-ccCCCC
Q 035891 161 SIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPH 239 (309)
Q Consensus 161 ~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~ 239 (309)
++++|+++.++ ..+++|++|++++| .++.++ ....+++|++|+++++ .++.++.+ ...+++
T Consensus 437 ~Ls~N~l~~~~--~~l~~L~~L~Ls~N-~l~~ip--------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 437 DVSNNNLDSFS--LFLPRLQELYISRN-KLKTLP--------------DASLFPVLLVMKISRN-QLKSVPDGIFDRLTS 498 (549)
T ss_dssp ECCSSCCSCCC--CCCTTCCEEECCSS-CCSSCC--------------CGGGCTTCCEEECCSS-CCCCCCTTGGGGCTT
T ss_pred ECCCCChhhhc--ccCChhcEEECCCC-ccCcCC--------------CcccCccCCEEecCCC-ccCCcCHHHHhcCcc
Confidence 88888666643 56778888888777 455553 2346778888888875 67666654 347788
Q ss_pred ccEEeecCcc
Q 035891 240 LKELEVNLCP 249 (309)
Q Consensus 240 L~~L~i~~C~ 249 (309)
|+.|++++|+
T Consensus 499 L~~L~l~~N~ 508 (549)
T 2z81_A 499 LQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEecCCC
Confidence 8888888775
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=9.6e-16 Score=147.02 Aligned_cols=207 Identities=22% Similarity=0.245 Sum_probs=142.4
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEEEEecchhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
.+|++|++++| .+..++.+.+..+++|++|++++|.+. ...+ ..+..+++|+.|+++.+....+..
T Consensus 381 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 381 SPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIG------------QELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp SCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCE------------EECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred CcCceEECCCC-CCCeEChhhhhCCCCCCEEeCCCCcCc------------cccCcccccCcccccEEecCCCCcceeCh
Confidence 57999999999 888775555899999999999999885 2233 567788899999887665433221
Q ss_pred hcCCcCccccCCCcCeEEEecCCC--CCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHS--LSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS 161 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 161 (309)
. .+.. +++|+.|++.++.. ....+ ..+..+++|+.|++++ +.+..++..... .+++|+.|+
T Consensus 448 ~----~~~~-~~~L~~L~l~~n~l~~~~~~p-~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~----------~l~~L~~L~ 510 (680)
T 1ziw_A 448 N----SFAL-VPSLQRLMLRRVALKNVDSSP-SPFQPLRNLTILDLSN-NNIANINDDMLE----------GLEKLEILD 510 (680)
T ss_dssp T----TTTT-CTTCCEEECTTSCCBCTTCSS-CTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEE
T ss_pred h----hhhc-CcccccchhccccccccccCC-cccccCCCCCEEECCC-CCCCcCChhhhc----------cccccCEEe
Confidence 1 1111 44688888887542 12233 3567778888888887 467766655444 678888888
Q ss_pred EeCceecccC----------ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891 162 IWGSKLRHVT----------WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY 231 (309)
Q Consensus 162 l~~c~l~~l~----------~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 231 (309)
+++|++..++ .+..+++|++|++++| .++.++. ..+..+++|+.|+++++ +++.++
T Consensus 511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~------------~~~~~l~~L~~L~Ls~N-~l~~l~ 576 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV------------EVFKDLFELKIIDLGLN-NLNTLP 576 (680)
T ss_dssp CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH------------HHcccccCcceeECCCC-CCCcCC
Confidence 8888555431 2566788888888776 4555542 34667788888888774 677777
Q ss_pred CCcc-CCCCccEEeecCcccCCCCCC
Q 035891 232 PKAL-PFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 232 ~~~~-~~~~L~~L~i~~C~~L~~lp~ 256 (309)
...+ .+++|+.|+++++ +++.+|.
T Consensus 577 ~~~~~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred HhHhCCCCCCCEEECCCC-cCCccCh
Confidence 6654 6788888888876 5665553
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=1.8e-15 Score=129.13 Aligned_cols=182 Identities=14% Similarity=0.159 Sum_probs=137.3
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
|+++.+|++|++++| .++.++.+.+.++++|++|++++|.+. ...+..+..+++|+.|++..+....
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ------------SLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC------------EECTTTTTTCTTCCEEECTTSCCCC
T ss_pred hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC------------ccChhhhcCCccccEEECCCCCccc
Confidence 467899999999999 899888766899999999999999996 4455678899999999997665544
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcc-
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH- 158 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~- 158 (309)
+.... ... +++|+.|+++++. +..+.. ..+..+++|+.|++++ +.+..++..... .+++|+
T Consensus 115 ~~~~~-~~~----l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~ 177 (276)
T 2z62_A 115 LENFP-IGH----LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLR----------VLHQMPL 177 (276)
T ss_dssp STTCC-CTT----CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGH----------HHHTCTT
T ss_pred cCchh-ccc----CCCCCEEECcCCc-cceecCchhhccCCCCCEEECCC-CCCCcCCHHHhh----------hhhhccc
Confidence 43321 112 4579999999954 444321 4678899999999999 578887655443 566666
Q ss_pred ---eEEEeCceecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 159 ---KVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 159 ---~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
.|++++|.+..++ ......+|++|++++|. ++.++. ..+..+++|+.|++++++
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD------------GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT------------TTTTTCCSCCEEECCSSC
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH------------hHhcccccccEEEccCCc
Confidence 8899999666665 23344689999999875 666653 345789999999999853
No 65
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.2e-16 Score=140.31 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=133.8
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCccc-chhhhhccCCCceEEEEEecchh-h-
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLV-LVEELLGLERLNVLTITLQSFAA-L- 81 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~-~~~~l~~L~~L~~L~l~~~~~~~-l- 81 (309)
.++++|+++++ .+...+.. +.++++|++|++++|.+. .. .+..+..+++|+.|+++++.... .
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~------------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIE------------VSTLHGILSQCSKLQNLSLEGLRLSDPIV 135 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEEC------------HHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred ccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcC------------HHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence 57788888888 67766655 677888888888888764 33 56667888889998887654431 2
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEE-cCccCcccccCCCccccc-Ccc
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEME-IDYAGEEVKRIRETHGFF-SLH 158 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~-~L~ 158 (309)
..+.. +++|+.|++++|..++.... ..+..+++|+.|++++|..+.... ..... .++ +|+
T Consensus 136 ~~l~~-------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----------~l~~~L~ 198 (336)
T 2ast_B 136 NTLAK-------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----------HVSETIT 198 (336)
T ss_dssp HHHTT-------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----------HSCTTCC
T ss_pred HHHhc-------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----------hcccCCC
Confidence 22222 33688899888765554211 235678888999988875665421 11122 577 888
Q ss_pred eEEEeCc--eec--ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC-
Q 035891 159 KVSIWGS--KLR--HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP- 232 (309)
Q Consensus 159 ~L~l~~c--~l~--~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~- 232 (309)
+|++++| .+. .++ .+..+++|++|++++|..+++... ..+..+++|++|++++|..+..-..
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH------------HHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 8988888 332 233 345688889999888865543321 3566778888888888864432211
Q ss_pred CccCCCCccEEeecCc
Q 035891 233 KALPFPHLKELEVNLC 248 (309)
Q Consensus 233 ~~~~~~~L~~L~i~~C 248 (309)
....+++|+.|++++|
T Consensus 267 ~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTS
T ss_pred HHhcCCCCCEEeccCc
Confidence 2336888888888888
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.6e-15 Score=131.63 Aligned_cols=175 Identities=21% Similarity=0.279 Sum_probs=140.3
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+.+.+|++|++++| .+..++. +..+++|++|++++|.+. . +..+..+++|+.|+++.+....+
T Consensus 60 ~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~-------------~-~~~~~~l~~L~~L~l~~n~l~~~ 122 (308)
T 1h6u_A 60 QYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLK-------------N-VSAIAGLQSIKTLDLTSTQITDV 122 (308)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCS-------------C-CGGGTTCTTCCEEECTTSCCCCC
T ss_pred hccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCC-------------C-chhhcCCCCCCEEECCCCCCCCc
Confidence 56889999999999 9999987 899999999999999985 2 24688999999999987766655
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS 161 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 161 (309)
+.+.. +++|+.|+++++ .+..++ .+..+++|+.|+++++ .+..++. .. .+++|+.|+
T Consensus 123 ~~l~~-------l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--l~----------~l~~L~~L~ 179 (308)
T 1h6u_A 123 TPLAG-------LSNLQVLYLDLN-QITNIS--PLAGLTNLQYLSIGNA-QVSDLTP--LA----------NLSKLTTLK 179 (308)
T ss_dssp GGGTT-------CTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GT----------TCTTCCEEE
T ss_pred hhhcC-------CCCCCEEECCCC-ccCcCc--cccCCCCccEEEccCC-cCCCChh--hc----------CCCCCCEEE
Confidence 44322 457999999996 455553 3788899999999985 6666554 22 789999999
Q ss_pred EeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC
Q 035891 162 IWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP 232 (309)
Q Consensus 162 l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 232 (309)
+++|.+..++.+..+++|++|++++| .+..+. .+..+++|+.|+++++ .+...+.
T Consensus 180 l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~--------------~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 180 ADDNKISDISPLASLPNLIEVHLKNN-QISDVS--------------PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG--------------GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred CCCCccCcChhhcCCCCCCEEEccCC-ccCccc--------------cccCCCCCCEEEccCC-eeecCCe
Confidence 99998888777889999999999987 455553 3678999999999996 5665543
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=7.4e-15 Score=140.85 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=35.4
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCcc
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQE 46 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 46 (309)
+++++||+|++++| .+..+|.+.++++++|++|++++|.+..++
T Consensus 70 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 70 QKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp HHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred hcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccC
Confidence 45788889999888 888888766888888999999888886443
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=140.78 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+++++|++|++++| .++.++.+.++++++|++|++++|.+. ...+..+..+++|++|++..+....+
T Consensus 49 ~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 49 FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ------------SLALGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp TTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC------------EECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred hCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCC------------ccCHhhhcCccccccccccccccccC
Confidence 34455555555555 444444333455555555555555543 22334566677777776654444333
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCe--ecccCccccccCCEEEEecCCCCceEEc
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSS--LSVFTLASLRHLEALDMTNCKDLEEMEI 138 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 138 (309)
+... ... +++|++|+++++. +.. +| ..+.++++|+.|++++ +.+..++.
T Consensus 116 ~~~~-~~~----l~~L~~L~L~~n~-l~~~~lp-~~~~~l~~L~~L~l~~-n~l~~~~~ 166 (570)
T 2z63_A 116 ENFP-IGH----LKTLKELNVAHNL-IQSFKLP-EYFSNLTNLEHLDLSS-NKIQSIYC 166 (570)
T ss_dssp TTCS-CTT----CTTCCEEECCSSC-CCCCCCC-GGGGGCTTCCEEECTT-SCCCEECG
T ss_pred CCcc-ccc----cccccEEecCCCc-cceecCh-hhhcccCCCCEEeCcC-CccceecH
Confidence 3211 111 4467777777753 333 22 3466677777777776 35555543
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=7.4e-15 Score=129.78 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=154.7
Q ss_pred CCCCCCCcEEecCCCcCC-CCCchhhhcCCCCCceE-EecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891 1 LKYLVNLKCLNLEYTYRI-YKIPGQVISNLKMLEAL-RMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF 78 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l-~~lp~~~i~~L~~L~~L-~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~ 78 (309)
|++|++|++|++++| .+ +.+|.+++.++++|+++ .+.+|.+. ...++.++.+++|+.|++..+..
T Consensus 50 f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~l~------------~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 50 FSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLL------------YINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp STTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETTCC------------EECTTSBCCCTTCCEEEEEEECC
T ss_pred HcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCccc------------ccCchhhhhcccccccccccccc
Confidence 578999999999999 65 66888778999998765 55567775 33456688999999999998877
Q ss_pred hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccc-cCCEEEEecCCCCceEEcCccCcccccCCCcccccCc
Q 035891 79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSL 157 (309)
Q Consensus 79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L 157 (309)
..++...... ..++..+++.++..+..++...+..+. .++.|++++ +.++.++...+ ...+|
T Consensus 117 ~~~~~~~~~~-----~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f-----------~~~~L 179 (350)
T 4ay9_X 117 KHLPDVHKIH-----SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAF-----------NGTQL 179 (350)
T ss_dssp SSCCCCTTCC-----BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSS-----------TTEEE
T ss_pred ccCCchhhcc-----cchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhc-----------cccch
Confidence 6665433222 224778888888888888755665554 688899998 78999987765 46789
Q ss_pred ceEEEeCc-eecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc
Q 035891 158 HKVSIWGS-KLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA 234 (309)
Q Consensus 158 ~~L~l~~c-~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~ 234 (309)
+.|.+.++ .++.+| .+..+++|++|+++++ .++.++ ...|.+|+.|.+.++..++.+|. .
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP---------------SYGLENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC---------------SSSCTTCCEEECTTCTTCCCCCC-T
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC---------------hhhhccchHhhhccCCCcCcCCC-c
Confidence 99999877 888887 3578899999999887 576664 24577888888888888998884 5
Q ss_pred cCCCCccEEeecC
Q 035891 235 LPFPHLKELEVNL 247 (309)
Q Consensus 235 ~~~~~L~~L~i~~ 247 (309)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 6789999999864
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=8e-16 Score=134.13 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=148.4
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
.++..+++.+ .+...+..++..+++|++|++++|.+. ...+..+..+++|+.|+++.+.......+.
T Consensus 11 ~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 77 (317)
T 3o53_A 11 RYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLS------------QISAADLAPFTKLELLNLSSNVLYETLDLE 77 (317)
T ss_dssp EEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCC------------CCCHHHHTTCTTCCEEECTTSCCEEEEEET
T ss_pred ceeEeecccc-chhhhHHHHhccCCCCCEEECcCCccC------------cCCHHHhhCCCcCCEEECCCCcCCcchhhh
Confidence 3566777777 777667666778889999999999996 455678999999999999766655433322
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
. +++|+.|+++++. ++.+ ...++|+.|++++ +.+..++.. .+++|+.|++++|
T Consensus 78 ---~----l~~L~~L~Ls~n~-l~~l-----~~~~~L~~L~l~~-n~l~~~~~~-------------~~~~L~~L~l~~N 130 (317)
T 3o53_A 78 ---S----LSTLRTLDLNNNY-VQEL-----LVGPSIETLHAAN-NNISRVSCS-------------RGQGKKNIYLANN 130 (317)
T ss_dssp ---T----CTTCCEEECCSSE-EEEE-----EECTTCCEEECCS-SCCSEEEEC-------------CCSSCEEEECCSS
T ss_pred ---h----cCCCCEEECcCCc-cccc-----cCCCCcCEEECCC-CccCCcCcc-------------ccCCCCEEECCCC
Confidence 2 4479999999863 3443 3448999999998 577777643 5789999999999
Q ss_pred eecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCC-ccCCccceeeccccccccccCCCccCCCCccE
Q 035891 166 KLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL-FPFARLESLSLYALGNLRSIYPKALPFPHLKE 242 (309)
Q Consensus 166 ~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ 242 (309)
++..++ .+..+++|++|++++|. +..+.. ..+ ..+++|++|+++++ .++.++... .+++|++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~ 195 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF------------AELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKT 195 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEG------------GGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCE
T ss_pred CCCCccchhhhccCCCCEEECCCCC-CCcccH------------HHHhhccCcCCEEECCCC-cCccccccc-ccccCCE
Confidence 776664 45678999999999874 444432 223 46899999999996 688775433 5899999
Q ss_pred EeecCcccCCCCCCCCC
Q 035891 243 LEVNLCPKLEKLPFDCT 259 (309)
Q Consensus 243 L~i~~C~~L~~lp~~~~ 259 (309)
|++++| +++.+|....
T Consensus 196 L~Ls~N-~l~~l~~~~~ 211 (317)
T 3o53_A 196 LDLSSN-KLAFMGPEFQ 211 (317)
T ss_dssp EECCSS-CCCEECGGGG
T ss_pred EECCCC-cCCcchhhhc
Confidence 999997 6777765433
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=2.6e-15 Score=129.25 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=122.2
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
++.+|++|++++| .+..+|. +..+++|++|++++|.+. .... +..+++|+.|+++.+....++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~l~-------------~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLT-------------DIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCC-------------CCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCCccC-------------CCcc-cccCCCCCEEECCCCcCCCCh
Confidence 4567889999988 8888875 788999999999988885 2222 778888888888766665554
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.+.. +++|+.|+++++. +..+ ..+..+++|+.|+++++ .+..+ .... .+++|+.|++
T Consensus 107 ~l~~-------l~~L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n-~l~~~--~~l~----------~l~~L~~L~L 163 (291)
T 1h6t_A 107 SLKD-------LKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNN-KITDI--TVLS----------RLTKLDTLSL 163 (291)
T ss_dssp GGTT-------CTTCCEEECTTSC-CCCC--GGGGGCTTCCEEECCSS-CCCCC--GGGG----------GCTTCSEEEC
T ss_pred hhcc-------CCCCCEEECCCCc-CCCC--hhhcCCCCCCEEEccCC-cCCcc--hhhc----------cCCCCCEEEc
Confidence 4332 3368888888753 4444 35677788888888874 56555 2222 6788888888
Q ss_pred eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891 163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI 230 (309)
Q Consensus 163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l 230 (309)
++|++..++.+..+++|++|++++| .++++. .+..+++|+.|++.++ .+...
T Consensus 164 ~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l~--------------~l~~l~~L~~L~l~~n-~i~~~ 215 (291)
T 1h6t_A 164 EDNQISDIVPLAGLTKLQNLYLSKN-HISDLR--------------ALAGLKNLDVLELFSQ-ECLNK 215 (291)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSS-CCCBCG--------------GGTTCTTCSEEEEEEE-EEECC
T ss_pred cCCccccchhhcCCCccCEEECCCC-cCCCCh--------------hhccCCCCCEEECcCC-cccCC
Confidence 8886666655777888888888776 455442 3567788888888875 44443
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.3e-15 Score=128.59 Aligned_cols=174 Identities=19% Similarity=0.133 Sum_probs=137.7
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.++++|++++| .++.++...+..+++|++|++++|.+.. +.. .+.+++|+.|+++.+....++..
T Consensus 31 ~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~-~~~l~~L~~L~Ls~N~l~~l~~~ 95 (290)
T 1p9a_G 31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK-------------LQV-DGTLPVLGTLDLSHNQLQSLPLL 95 (290)
T ss_dssp TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCE-------------EEC-CSCCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCc-------------ccC-CCCCCcCCEEECCCCcCCcCchh
Confidence 57999999999 8988866569999999999999999862 222 26899999999987766654432
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. .. +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++
T Consensus 96 ~--~~----l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~ 157 (290)
T 1p9a_G 96 G--QT----LPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLT----------PTPKLEKLSLAN 157 (290)
T ss_dssp T--TT----CTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTT----------TCTTCCEEECTT
T ss_pred h--cc----CCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcc----------cccCCCEEECCC
Confidence 1 12 457999999995 56677655788999999999998 578888776654 789999999999
Q ss_pred ceecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 165 SKLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 165 c~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
|+++.++. +..+++|++|+++++ .++.++ ......++|+.|.+.+.+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip-------------~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQEN-SLYTIP-------------KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCC-------------TTTTTTCCCSEEECCSCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCC-cCCccC-------------hhhcccccCCeEEeCCCC
Confidence 98888873 567899999999887 466665 456677899999999753
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=138.30 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=119.6
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+++.+|++|++++| .+..+|.. +..+ +|++|++.+|.+..++. ..+++|+.|++..+.....
T Consensus 279 ~~l~~L~~L~l~~~-~l~~l~~~-~~~~-~L~~L~l~~n~~~~l~~---------------~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 279 NCLTNVSSFSLVSV-TIERVKDF-SYNF-GWQHLELVNCKFGQFPT---------------LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp GGGTTCSEEEEESC-EECSCCBC-CSCC-CCSEEEEESCBCSSCCB---------------CBCSSCCEEEEESCBSCCB
T ss_pred cCcCcccEEEecCc-cchhhhhh-hccC-CccEEeeccCcccccCc---------------ccccccCEEeCcCCccccc
Confidence 45678999999998 88888886 7777 99999999888853322 2455666666654332211
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeec--ccCccccccCCEEEEecCCCCceEEcCccC--c----------cccc
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLS--VFTLASLRHLEALDMTNCKDLEEMEIDYAG--E----------EVKR 147 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~--~----------~~~~ 147 (309)
... .. +++|+.|+++++. +.... ...+..+++|+.|+++++ .+..++..+.. . ....
T Consensus 341 ~~~---~~----~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 341 FSE---VD----LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CCC---CB----CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred ccc---cc----CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccc
Confidence 110 11 3356666665543 22221 123344555666655552 33333322110 0 0000
Q ss_pred CC--CcccccCcceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccc
Q 035891 148 IR--ETHGFFSLHKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYA 223 (309)
Q Consensus 148 ~~--~~~~~~~L~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 223 (309)
.. ....+++|+.|++++|.+... + .+..+++|++|++++|......++ ..+..+++|++|++++
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQ 479 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch------------hhhhcccCCCEEECCC
Confidence 00 000445555555555533222 1 234455566666655542211111 3566778888888887
Q ss_pred ccccccc-CCCccCCCCccEEeecCcccCCCCCCC-CCCCCCcceEEE
Q 035891 224 LGNLRSI-YPKALPFPHLKELEVNLCPKLEKLPFD-CTSGQERKLIIK 269 (309)
Q Consensus 224 ~~~L~~l-~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~~~~~l~~~~ 269 (309)
| .++.+ +.....+++|++|++++| +++.+|.. .... ..++.+.
T Consensus 480 n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~ 524 (570)
T 2z63_A 480 C-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL-TSLQKIW 524 (570)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEE
T ss_pred C-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcc-cCCcEEE
Confidence 6 56555 334447788888888887 56666543 3333 4555554
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=4.3e-14 Score=131.32 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=62.1
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.++.+.+.++++|++|++++|.+. ...+..++.+++|++|+++.+....++..
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQ------------YLDISVFKFNQELEYLDLSHNKLVKISCH 87 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCC------------EEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCCccC------------CcChHHhhcccCCCEEecCCCceeecCcc
Confidence 46788888888 777776544778888888888888775 34455666777777777765554433322
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEec
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTN 129 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~ 129 (309)
. +++|++|+++++. +..++. ..++.+++|+.|++++
T Consensus 88 ----~----l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 88 ----P----TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp ----C----CCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEE
T ss_pred ----c----cCCccEEeccCCc-cccccchhhhccCCcceEEEecC
Confidence 1 3356666666643 222211 2445555555555554
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=9.3e-15 Score=123.03 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=100.0
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
..++++++++ .++.+|.+ +. +++++|++++|.+. ...+..+..+++|+.|+++.+....+..-
T Consensus 15 ~~~~l~~~~~-~l~~~p~~-~~--~~l~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 77 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSG-IP--ADTEKLDLQSTGLA------------TLSDATFRGLTKLTWLNLDYNQLQTLSAG- 77 (251)
T ss_dssp GGTEEECTTC-CCSSCCSC-CC--TTCCEEECTTSCCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTT-
T ss_pred CCeEEecCCC-CccccCCC-CC--CCCCEEEccCCCcC------------ccCHhHhcCcccCCEEECCCCcCCccCHh-
Confidence 4678999998 89999986 44 68999999999986 33444567777788877754433322110
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
.... +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++|
T Consensus 78 ~~~~----l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~Ls~N 141 (251)
T 3m19_A 78 VFDD----LTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFD----------RLTKLKELRLNTN 141 (251)
T ss_dssp TTTT----CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSS
T ss_pred Hhcc----CCcCCEEECCCC-cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhc----------cCCcccEEECcCC
Confidence 0011 335666666663 33444433445556666666665 355555444332 4566666666666
Q ss_pred eecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccc
Q 035891 166 KLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYAL 224 (309)
Q Consensus 166 ~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 224 (309)
++..++ .+..+++|++|++++| .++.++. ..+..+++|+.|++.++
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH------------GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSC
T ss_pred cCCccCHHHcCcCcCCCEEECCCC-cCCccCH------------HHHhCCCCCCEEEeeCC
Confidence 555544 2445566666666554 2333321 23445556666666553
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.56 E-value=5.7e-14 Score=128.36 Aligned_cols=116 Identities=21% Similarity=0.190 Sum_probs=77.6
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc------cccCCcccchhhhhccCCCceEEEEEecc
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS------ILFGGSLVLVEELLGLERLNVLTITLQSF 78 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~------~l~~~~~~~~~~l~~L~~L~~L~l~~~~~ 78 (309)
.+|++|++++| .++.+| + ++++++|++|++++|.+..+|... ++....-..+.+++.+++|+.|+++.+..
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-E-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCCEEECcCC-CCCCCc-c-cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 57889999988 888888 4 889999999999998887655421 12211111123577888888888876554
Q ss_pred hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE
Q 035891 79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM 136 (309)
Q Consensus 79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l 136 (309)
..++... ++|+.|+++++ .+..++ .+..+++|+.|+++++ .+..+
T Consensus 208 ~~l~~~~---------~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N-~l~~l 252 (454)
T 1jl5_A 208 KKLPDLP---------LSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNN-LLKTL 252 (454)
T ss_dssp SSCCCCC---------TTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSS-CCSSC
T ss_pred CcCCCCc---------CcccEEECcCC-cCCccc--ccCCCCCCCEEECCCC-cCCcc
Confidence 4433221 16888888886 445554 4777888888888873 45443
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=6.8e-14 Score=131.28 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=55.8
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .+..+|.+.++++++|++|++++|.+. ...++.+..+++|++|+++.+....++..
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIR------------SLDFHVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCC------------EECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCC------------cCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence 46777777777 677766444777777777777777775 23344455566666666654443332221
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEec
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTN 129 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~ 129 (309)
. +++|+.|+++++. +..++. ..+.++++|+.|++++
T Consensus 119 ----~----l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 119 ----P----MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp ----C----CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred ----c----cccCCEEECCCCC-ccccCchHhhcccCcccEEecCC
Confidence 1 2245555555532 333322 2344445555555544
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=5e-15 Score=128.62 Aligned_cols=202 Identities=14% Similarity=0.125 Sum_probs=113.5
Q ss_pred CcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhh--hccCCCceEEEEEecch
Q 035891 7 LKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL--LGLERLNVLTITLQSFA 79 (309)
Q Consensus 7 Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l--~~L~~L~~L~l~~~~~~ 79 (309)
++.+.+.++ .+.. ++. ...+++|++|++++|.+. ...+..+ ..+++|++|+++.+...
T Consensus 66 l~~l~l~~~-~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~------------~~~~~~~~~~~~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 66 VRRLTVGAA-QVPAQLLVGALR--VLAYSRLKELTLEDLKIT------------GTMPPLPLEATGLALSSLRLRNVSWA 130 (310)
T ss_dssp CCEEEECSC-CCBHHHHHHHHH--HHHHSCCCEEEEESCCCB------------SCCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred eeEEEEeCC-cCCHHHHHHHHH--hcccCceeEEEeeCCEec------------cchhhhhhhccCCCCCEEEeeccccc
Confidence 456666655 4332 111 123456777777777765 3344444 66777777777766554
Q ss_pred hh----hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce--EEcCc-cCcccccCCCcc
Q 035891 80 AL----HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE--MEIDY-AGEEVKRIRETH 152 (309)
Q Consensus 80 ~l----~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~-~~~~~~~~~~~~ 152 (309)
.. ...... . +++|+.|+++++. +..++...+..+++|+.|+++++.-... ++... .+
T Consensus 131 ~~~~~~~~~~~~-~----~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------- 194 (310)
T 4glp_A 131 TGRSWLAELQQW-L----KPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH---------- 194 (310)
T ss_dssp STTSSHHHHHTT-B----CSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT----------
T ss_pred chhhhhHHHHhh-h----ccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh----------
Confidence 31 111111 1 3367777777754 3444434566777777777777432221 21111 11
Q ss_pred cccCcceEEEeCceecccCc-----cCCCCCccEEEEEcCccccccccccccCCcCcccccCCcc---CCccceeecccc
Q 035891 153 GFFSLHKVSIWGSKLRHVTW-----LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFP---FARLESLSLYAL 224 (309)
Q Consensus 153 ~~~~L~~L~l~~c~l~~l~~-----l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~---~~~L~~L~L~~~ 224 (309)
.+++|++|++++|+++.++. ++.+++|++|++++|. ++...+ ..+.. +++|++|+++++
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p------------~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVN------------PSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCC------------SCCSSCCCCTTCCCEECCSS
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccch------------hhHHhccCcCcCCEEECCCC
Confidence 56777777777776554442 2456777777777764 333311 12223 367777777774
Q ss_pred ccccccCCCccCCCCccEEeecCcccCCCCCC
Q 035891 225 GNLRSIYPKALPFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 225 ~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 256 (309)
.++.++... +++|+.|++++| +++.+|.
T Consensus 262 -~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 262 -GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp -CCCSCCSCC--CSCCSCEECCSC-CCCSCCC
T ss_pred -CCCchhhhh--cCCCCEEECCCC-cCCCCch
Confidence 566666544 367777777776 5666554
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=7.5e-16 Score=135.11 Aligned_cols=204 Identities=19% Similarity=0.279 Sum_probs=144.1
Q ss_pred CCCCCCcEEecCCCcCCCC--CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe-cc
Q 035891 2 KYLVNLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ-SF 78 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~-~~ 78 (309)
.++.+|++|++++| .+.. +|.. +..+++|++|++++|.+. ...+..+..+++|+.|+++.+ ..
T Consensus 90 ~~~~~L~~L~L~~~-~l~~~~~~~~-~~~~~~L~~L~L~~~~l~------------~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 90 FSPFRVQHMDLSNS-VIEVSTLHGI-LSQCSKLQNLSLEGLRLS------------DPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp CCCBCCCEEECTTC-EECHHHHHHH-HTTBCCCSEEECTTCBCC------------HHHHHHHTTCTTCSEEECTTCBSC
T ss_pred ccCCCCCEEEccCC-CcCHHHHHHH-HhhCCCCCEEeCcCcccC------------HHHHHHHhcCCCCCEEECCCCCCC
Confidence 46789999999999 6764 6764 899999999999999986 677888999999999999765 23
Q ss_pred h--hhhhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccc-cCCEEEEecCC-CCc--eEEcCccCcccccCCCc
Q 035891 79 A--ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLR-HLEALDMTNCK-DLE--EMEIDYAGEEVKRIRET 151 (309)
Q Consensus 79 ~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~-~L~~L~l~~~~-~l~--~l~~~~~~~~~~~~~~~ 151 (309)
+ .++.... . +++|+.|++++|..++.... ..+..++ +|+.|++++|. .+. .++. ...
T Consensus 156 ~~~~l~~~~~--~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~--------- 219 (336)
T 2ast_B 156 SEFALQTLLS--S----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVR--------- 219 (336)
T ss_dssp CHHHHHHHHH--H----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHH---------
T ss_pred CHHHHHHHHh--c----CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHh---------
Confidence 3 2333221 1 34799999999856665321 3467788 99999999974 343 2222 222
Q ss_pred ccccCcceEEEeCce-ecc--cCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891 152 HGFFSLHKVSIWGSK-LRH--VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228 (309)
Q Consensus 152 ~~~~~L~~L~l~~c~-l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 228 (309)
.+++|+.|++++|. +.. ++.+..+++|++|++++|..+..... ..+..+++|+.|++.+|
T Consensus 220 -~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~---- 282 (336)
T 2ast_B 220 -RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI---- 282 (336)
T ss_dssp -HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS----
T ss_pred -hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH------------HHHhcCCCCCEEeccCc----
Confidence 68999999999994 543 44677889999999999974432210 24677999999999998
Q ss_pred ccCCCcc-CC-CCccEEeecCcccCCCC
Q 035891 229 SIYPKAL-PF-PHLKELEVNLCPKLEKL 254 (309)
Q Consensus 229 ~l~~~~~-~~-~~L~~L~i~~C~~L~~l 254 (309)
++.... .+ ..|+.|++. |.+++..
T Consensus 283 -i~~~~~~~l~~~l~~L~l~-~n~l~~~ 308 (336)
T 2ast_B 283 -VPDGTLQLLKEALPHLQIN-CSHFTTI 308 (336)
T ss_dssp -SCTTCHHHHHHHSTTSEES-CCCSCCT
T ss_pred -cCHHHHHHHHhhCcceEEe-cccCccc
Confidence 333221 12 235555565 4566653
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.3e-14 Score=136.86 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=129.8
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
.|.+|++|++++| .+..+|. +..|++|++|++++|.+. ..+. +..+++|+.|+++.+....++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~-------------~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLT-------------DIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCC-------------CCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred cCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCC-------------CChh-hccCCCCCEEECcCCCCCCCh
Confidence 4678999999999 8888885 899999999999999885 2222 888999999999876665544
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.+.. +++|+.|+++++. +..+ ..+..+++|+.|++++| .+..+ .... .+++|+.|++
T Consensus 104 ~l~~-------l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~l--~~l~----------~l~~L~~L~L 160 (605)
T 1m9s_A 104 SLKD-------LKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNN-KITDI--TVLS----------RLTKLDTLSL 160 (605)
T ss_dssp TSTT-------CTTCCEEECTTSC-CCCC--GGGGGCTTCSEEECCSS-CCCCC--GGGG----------SCTTCSEEEC
T ss_pred hhcc-------CCCCCEEEecCCC-CCCC--ccccCCCccCEEECCCC-ccCCc--hhhc----------ccCCCCEEEC
Confidence 3222 4479999998864 4444 45778889999999884 56655 2222 6889999999
Q ss_pred eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891 163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY 231 (309)
Q Consensus 163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 231 (309)
++|.+..++.+..+++|+.|+|++| .+..+ ..+..+++|+.|+|.++ .+...+
T Consensus 161 s~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l--------------~~l~~l~~L~~L~L~~N-~l~~~p 213 (605)
T 1m9s_A 161 EDNQISDIVPLAGLTKLQNLYLSKN-HISDL--------------RALAGLKNLDVLELFSQ-ECLNKP 213 (605)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSS-CCCBC--------------GGGTTCTTCSEEECCSE-EEECCC
T ss_pred cCCcCCCchhhccCCCCCEEECcCC-CCCCC--------------hHHccCCCCCEEEccCC-cCcCCc
Confidence 9987777656888899999999887 45554 24677889999999886 454443
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=7.6e-15 Score=118.99 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=19.5
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCC
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS 42 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 42 (309)
+.+|++|++++| .+..+| + +..+++|++|++++|.+
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~ 78 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHA 78 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCC
T ss_pred cCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCC
Confidence 345555555555 555555 2 55555555555555543
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=1.7e-15 Score=138.40 Aligned_cols=192 Identities=18% Similarity=0.105 Sum_probs=88.4
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCC-------------Cc
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLER-------------LN 69 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~-------------L~ 69 (309)
+.++||+|++++| .++.+|.+ +++|++|++|++++|.+. ...+..++.+.+ ++
T Consensus 9 ~~~~L~~L~l~~n-~l~~iP~~-i~~L~~L~~L~l~~n~~~------------~~~p~~~~~l~~L~~l~l~~c~~~~l~ 74 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTEMPVE-AENVKSKTEYYNAWSEWE------------RNAPPGNGEQREMAVSRLRDCLDRQAH 74 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHH------------HTSCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred ccccchhhhcccC-chhhCChh-HhcccchhhhhccCCccc------------ccCCcccccchhcchhhhhhhhccCCC
Confidence 3578999999999 88999998 899999999999998875 233344444333 35
Q ss_pred eEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecC-------------------
Q 035891 70 VLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNC------------------- 130 (309)
Q Consensus 70 ~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~------------------- 130 (309)
.|+++++....++.+. ++|+.|+++++ .++.++. .+++|+.|+++++
T Consensus 75 ~L~l~~~~l~~lp~~~---------~~L~~L~l~~n-~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~ 140 (454)
T 1jl5_A 75 ELELNNLGLSSLPELP---------PHLESLVASCN-SLTELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 140 (454)
T ss_dssp EEECTTSCCSCCCSCC---------TTCSEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCCSCCTTCCEEECCS
T ss_pred EEEecCCccccCCCCc---------CCCCEEEccCC-cCCcccc----ccCCCcEEECCCCccCcccCCCCCCCEEECcC
Confidence 5555433333322211 14555555543 2233321 1234555555442
Q ss_pred CCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCC
Q 035891 131 KDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL 210 (309)
Q Consensus 131 ~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 210 (309)
+.++.++ . .+ .+++|++|++++|+++.+|. ..++|++|++++| .++.+ ..+
T Consensus 141 n~l~~lp-~-~~----------~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n-~l~~l--------------~~~ 191 (454)
T 1jl5_A 141 NQLEKLP-E-LQ----------NSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNN-QLEEL--------------PEL 191 (454)
T ss_dssp SCCSSCC-C-CT----------TCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-CCSSC--------------CCC
T ss_pred CCCCCCc-c-cC----------CCCCCCEEECCCCcCcccCC--CcccccEEECcCC-cCCcC--------------ccc
Confidence 2333332 1 11 44555555555554444331 1235555555544 22222 346
Q ss_pred ccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCC
Q 035891 211 FPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 211 ~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~ 256 (309)
+.+++|++|++.++ .++.++. ..++|++|++++| +++.+|.
T Consensus 192 ~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~n-~l~~lp~ 232 (454)
T 1jl5_A 192 QNLPFLTAIYADNN-SLKKLPD---LPLSLESIVAGNN-ILEELPE 232 (454)
T ss_dssp TTCTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSSCCC
T ss_pred cCCCCCCEEECCCC-cCCcCCC---CcCcccEEECcCC-cCCcccc
Confidence 77888999999886 5666654 2368899999887 6677774
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=5.7e-14 Score=132.74 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=26.1
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCC
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSK 44 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 44 (309)
.+|++|++++| .++.+|. .+++|++|++++|.+..
T Consensus 61 ~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~ 95 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTS 95 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSC
T ss_pred CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCc
Confidence 46788888888 7777775 46778888888877753
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4e-14 Score=119.11 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=123.2
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .+..++...++++++|++|++++|.+. ...+..+..+++|+.|+++.+....++.-
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQ------------TLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCC------------ccCHhHhccCCcCCEEECCCCcccccChh
Confidence 46999999999 898887766999999999999999996 44455678899999999976665543321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. ... +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++
T Consensus 102 ~-~~~----l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~L~~ 164 (251)
T 3m19_A 102 V-FDH----LTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFD----------KLTNLQTLSLST 164 (251)
T ss_dssp T-TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCS
T ss_pred H-hcc----cCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC-CcCCccCHHHcC----------cCcCCCEEECCC
Confidence 0 111 457999999995 56677645678899999999998 578888775554 789999999999
Q ss_pred ceecccC--ccCCCCCccEEEEEcCcc
Q 035891 165 SKLRHVT--WLILAPNLKHIEVYNCRY 189 (309)
Q Consensus 165 c~l~~l~--~l~~l~~L~~L~l~~c~~ 189 (309)
|++..++ .+..+++|++|++++++.
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 9777776 467789999999998753
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=2.6e-13 Score=128.21 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA 79 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 79 (309)
++++|+++++ .++.+|.. +. ++|++|++++|.+..+|. .+++|++|+++++...
T Consensus 41 ~l~~L~ls~n-~L~~lp~~-l~--~~L~~L~L~~N~l~~lp~----------------~l~~L~~L~Ls~N~l~ 94 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDC-LP--AHITTLVIPDNNLTSLPA----------------LPPELRTLEVSGNQLT 94 (622)
T ss_dssp CCCEEECCSS-CCSCCCSC-CC--TTCSEEEECSCCCSCCCC----------------CCTTCCEEEECSCCCS
T ss_pred CCcEEEecCC-CcCccChh-hC--CCCcEEEecCCCCCCCCC----------------cCCCCCEEEcCCCcCC
Confidence 5899999999 89999987 54 899999999999864322 3456666666544433
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=123.11 Aligned_cols=202 Identities=20% Similarity=0.178 Sum_probs=142.3
Q ss_pred CCCCcEEecCCCcCCC-CCchhhh--cCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 4 LVNLKCLNLEYTYRIY-KIPGQVI--SNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~-~lp~~~i--~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
+.+|++|++++| .+. .+|.. + +.+++|++|++++|.+....+ ......+..+++|+.|+++.+....
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~--------~~~~~~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPL-PLEATGLALSSLRLRNVSWATGRS--------WLAELQQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTTS--------SHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred cCceeEEEeeCC-Eeccchhhh-hhhccCCCCCEEEeecccccchhh--------hhHHHHhhhccCCCEEEeeCCCcch
Confidence 356999999999 766 46665 5 899999999999999862100 0011345679999999998776644
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCe--eccc-CccccccCCEEEEecCCCCceEEcC---ccCcccccCCCcccc
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSS--LSVF-TLASLRHLEALDMTNCKDLEEMEID---YAGEEVKRIRETHGF 154 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~~~~~~~~~ 154 (309)
+..- .+.. +++|+.|+++++..... ++.. .+..+++|+.|++++| .++.++.. ... .+
T Consensus 160 ~~~~----~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~----------~l 223 (310)
T 4glp_A 160 FSCE----QVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA----------AG 223 (310)
T ss_dssp CCTT----SCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH----------HT
T ss_pred hhHH----Hhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh----------cC
Confidence 3311 1111 45799999999764332 2212 3467899999999995 66654432 112 57
Q ss_pred cCcceEEEeCceeccc-C-ccCC---CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc
Q 035891 155 FSLHKVSIWGSKLRHV-T-WLIL---APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS 229 (309)
Q Consensus 155 ~~L~~L~l~~c~l~~l-~-~l~~---l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 229 (309)
++|++|++++|++..+ | .+.. +++|++|++++| .++.++ ..+ +++|++|+++++ .++.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp-------------~~~--~~~L~~L~Ls~N-~l~~ 286 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP-------------KGL--PAKLRVLDLSSN-RLNR 286 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC-------------SCC--CSCCSCEECCSC-CCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchh-------------hhh--cCCCCEEECCCC-cCCC
Confidence 9999999999966665 3 2333 479999999887 455554 222 489999999995 7888
Q ss_pred cCCCccCCCCccEEeecCcc
Q 035891 230 IYPKALPFPHLKELEVNLCP 249 (309)
Q Consensus 230 l~~~~~~~~~L~~L~i~~C~ 249 (309)
++. ...+++|+.|++++++
T Consensus 287 ~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 APQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCC-TTSCCCCSCEECSSTT
T ss_pred Cch-hhhCCCccEEECcCCC
Confidence 765 5678999999999863
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1.2e-13 Score=128.98 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=136.8
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
+|++|++++| .++.+|.+ + +++|++|++++|.+. .++ ..+++|+.|+++.+....++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~-l--~~~L~~L~Ls~N~l~-------------~ip---~~l~~L~~L~Ls~N~l~~ip~-- 117 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN-L--PPQITVLEITQNALI-------------SLP---ELPASLEYLDACDNRLSTLPE-- 117 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC-C--CTTCSEEECCSSCCS-------------CCC---CCCTTCCEEECCSSCCSCCCC--
T ss_pred CccEEEeCCC-CCCccCHh-H--cCCCCEEECcCCCCc-------------ccc---cccCCCCEEEccCCCCCCcch--
Confidence 7999999999 89999987 4 388999999999985 233 457999999998776665544
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
+.. +|+.|+++++ .++.++. .+++|+.|++++ +.+..++. .+++|+.|++++|
T Consensus 118 ----l~~---~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~-N~l~~lp~--------------~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 118 ----LPA---SLKHLDVDNN-QLTMLPE----LPALLEYINADN-NQLTMLPE--------------LPTSLEVLSVRNN 170 (571)
T ss_dssp ----CCT---TCCEEECCSS-CCSCCCC----CCTTCCEEECCS-SCCSCCCC--------------CCTTCCEEECCSS
T ss_pred ----hhc---CCCEEECCCC-cCCCCCC----cCccccEEeCCC-CccCcCCC--------------cCCCcCEEECCCC
Confidence 121 6999999995 4566653 578999999998 56665542 4689999999999
Q ss_pred eecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEee
Q 035891 166 KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEV 245 (309)
Q Consensus 166 ~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i 245 (309)
++..+|.+. ++|++|++++| .++.++. ... .-....+.|+.|+++++ .++.+|...+.+++|+.|++
T Consensus 171 ~L~~lp~l~--~~L~~L~Ls~N-~L~~lp~-~~~--------~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 171 QLTFLPELP--ESLEALDVSTN-LLESLPA-VPV--------RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCSCCCCCC--TTCCEEECCSS-CCSSCCC-CC----------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEEC
T ss_pred CCCCcchhh--CCCCEEECcCC-CCCchhh-HHH--------hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEe
Confidence 888887633 89999999987 4655541 000 00011123399999995 78999988888999999999
Q ss_pred cCccc
Q 035891 246 NLCPK 250 (309)
Q Consensus 246 ~~C~~ 250 (309)
++++-
T Consensus 238 ~~N~l 242 (571)
T 3cvr_A 238 EDNPL 242 (571)
T ss_dssp CSSSC
T ss_pred eCCcC
Confidence 99753
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=4e-15 Score=133.15 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=126.5
Q ss_pred CCCCCCcEEecCCCcCCC----CCchhh------hcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceE
Q 035891 2 KYLVNLKCLNLEYTYRIY----KIPGQV------ISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVL 71 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~----~lp~~~------i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L 71 (309)
.++++|++|++++| .+. .+|.++ +..+++|++|++++|.+.. .....++..+..+++|+.|
T Consensus 57 ~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--------~~~~~l~~~l~~~~~L~~L 127 (386)
T 2ca6_A 57 ASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP--------TAQEPLIDFLSKHTPLEHL 127 (386)
T ss_dssp TTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT--------TTHHHHHHHHHHCTTCCEE
T ss_pred HhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH--------HHHHHHHHHHHhCCCCCEE
Confidence 35666677777665 333 234431 2566777777777666641 0001355667778888888
Q ss_pred EEEEecchhhh--hhcCC-cCcc-----ccCCCcCeEEEecCCCC-Ceecc--cCccccccCCEEEEecCCCCceE----
Q 035891 72 TITLQSFAALH--RLLTS-PSLQ-----SIFSNTPSLCLRNCHSL-SSLSV--FTLASLRHLEALDMTNCKDLEEM---- 136 (309)
Q Consensus 72 ~l~~~~~~~l~--~~~~~-~~l~-----~~l~~L~~L~l~~~~~l-~~~~~--~~l~~l~~L~~L~l~~~~~l~~l---- 136 (309)
+++.+...... .+... ..+. +..++|+.|++++|.-. ..++. ..+..+++|+.|++++| .+...
T Consensus 128 ~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~ 206 (386)
T 2ca6_A 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEH 206 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHH
T ss_pred ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHH
Confidence 88766554211 11110 0000 00036888888886432 12221 14456778888888885 44421
Q ss_pred -EcCccCcccccCCCcccccCcceEEEeCcee-----cccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccC
Q 035891 137 -EIDYAGEEVKRIRETHGFFSLHKVSIWGSKL-----RHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQN 209 (309)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l-----~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 209 (309)
...... .+++|+.|++++|.+ ..++ .+..+++|++|++++|. +....... .. ..
T Consensus 207 l~~~~l~----------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~------l~--~~ 267 (386)
T 2ca6_A 207 LLLEGLA----------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA------VV--DA 267 (386)
T ss_dssp HHHTTGG----------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH------HH--HH
T ss_pred HHHHHhh----------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH------HH--HH
Confidence 111222 678999999998855 3333 46678899999998875 33220000 00 12
Q ss_pred C--ccCCccceeeccccccccc-----cCCCc-cCCCCccEEeecCcc
Q 035891 210 L--FPFARLESLSLYALGNLRS-----IYPKA-LPFPHLKELEVNLCP 249 (309)
Q Consensus 210 ~--~~~~~L~~L~L~~~~~L~~-----l~~~~-~~~~~L~~L~i~~C~ 249 (309)
+ +.+++|++|++++| .++. ++... ..+++|+.|++++|+
T Consensus 268 l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2 34899999999986 5655 55544 358999999999874
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=1.2e-13 Score=118.88 Aligned_cols=148 Identities=20% Similarity=0.309 Sum_probs=121.6
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+.+.+|++|++++| .++.++. +.++++|++|++++|.+. . +..+..+++|+.|+++.+....+
T Consensus 65 ~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~-------------~-~~~l~~l~~L~~L~L~~n~i~~~ 127 (291)
T 1h6t_A 65 QYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVK-------------D-LSSLKDLKKLKSLSLEHNGISDI 127 (291)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-------------C-GGGGTTCTTCCEEECTTSCCCCC
T ss_pred hcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCC-------------C-ChhhccCCCCCEEECCCCcCCCC
Confidence 56789999999999 9999987 899999999999999985 2 34589999999999987766655
Q ss_pred hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS 161 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 161 (309)
+.+.. +++|+.|+++++. +..+ ..+..+++|+.|+++++ .+..++. .. .+++|+.|+
T Consensus 128 ~~l~~-------l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l~----------~l~~L~~L~ 184 (291)
T 1h6t_A 128 NGLVH-------LPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LA----------GLTKLQNLY 184 (291)
T ss_dssp GGGGG-------CTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GT----------TCTTCCEEE
T ss_pred hhhcC-------CCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCC-ccccchh--hc----------CCCccCEEE
Confidence 43333 4479999999964 4555 46788999999999984 6776654 32 789999999
Q ss_pred EeCceecccCccCCCCCccEEEEEcCcc
Q 035891 162 IWGSKLRHVTWLILAPNLKHIEVYNCRY 189 (309)
Q Consensus 162 l~~c~l~~l~~l~~l~~L~~L~l~~c~~ 189 (309)
+++|.+..++.+..+++|+.|++++|.-
T Consensus 185 L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 185 LSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred CCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 9999888888888999999999998753
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=4.6e-16 Score=145.79 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=145.7
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCC-ccCCccccCCcccchhhhhccCCCceEE-EEEecch
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSK-QESDSILFGGSLVLVEELLGLERLNVLT-ITLQSFA 79 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~-~~~~~~l~~~~~~~~~~l~~L~~L~~L~-l~~~~~~ 79 (309)
...++|+.|++++| .++.+|.+ |++|++|+.|++++|.... .+.-..-.......+..++.+++|+.|+ +..+...
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChh-hHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45788999999999 89999998 9999999999997654100 0000000001134556677777777776 3322222
Q ss_pred hhhhhcC-CcCccc-cCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCc
Q 035891 80 ALHRLLT-SPSLQS-IFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSL 157 (309)
Q Consensus 80 ~l~~~~~-~~~l~~-~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L 157 (309)
.++...- ...+.. +...|+.|+++++ .++.+| .+..+++|+.|++++ +.+..+|..+. .+++|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp--~~~~l~~L~~L~Ls~-N~l~~lp~~~~-----------~l~~L 488 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLC--HLEQLLLVTHLDLSH-NRLRALPPALA-----------ALRCL 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCC--CGGGGTTCCEEECCS-SCCCCCCGGGG-----------GCTTC
T ss_pred hhhhhhhhcccccccCccCceEEEecCC-CCCCCc--CccccccCcEeecCc-ccccccchhhh-----------cCCCC
Confidence 2221100 000000 0115889999985 566675 388999999999998 57887776444 78999
Q ss_pred ceEEEeCceecccCccCCCCCccEEEEEcCccccccc-cccccCCcCcccccCCccCCccceeeccccccccccCCCcc-
Q 035891 158 HKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEII-SLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL- 235 (309)
Q Consensus 158 ~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~- 235 (309)
+.|++++|+++.+|.++.+++|++|++++| .++.++ + ..++.+++|+.|+++++ .++.++....
T Consensus 489 ~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N-~l~~~~~p------------~~l~~l~~L~~L~L~~N-~l~~~~~~~~~ 554 (567)
T 1dce_A 489 EVLQASDNALENVDGVANLPRLQELLLCNN-RLQQSAAI------------QPLVSCPRLVLLNLQGN-SLCQEEGIQER 554 (567)
T ss_dssp CEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCCSSSTT------------GGGGGCTTCCEEECTTS-GGGGSSSCTTH
T ss_pred CEEECCCCCCCCCcccCCCCCCcEEECCCC-CCCCCCCc------------HHHhcCCCCCEEEecCC-cCCCCccHHHH
Confidence 999999998888888889999999999887 455552 2 56788999999999995 6777765433
Q ss_pred ---CCCCccEEe
Q 035891 236 ---PFPHLKELE 244 (309)
Q Consensus 236 ---~~~~L~~L~ 244 (309)
.+|+|+.|+
T Consensus 555 l~~~lp~L~~L~ 566 (567)
T 1dce_A 555 LAEMLPSVSSIL 566 (567)
T ss_dssp HHHHCTTCSEEE
T ss_pred HHHHCcccCccC
Confidence 478888775
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=9.5e-14 Score=117.73 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=89.1
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
++..+++.++ .++.++. +..+++|++|++++|.+. .+ .++..+++|+.|+++.+....++.+.
T Consensus 20 ~l~~l~l~~~-~i~~~~~--~~~l~~L~~L~l~~n~i~-------------~l-~~l~~l~~L~~L~L~~N~i~~~~~l~ 82 (263)
T 1xeu_A 20 NAVKQNLGKQ-SVTDLVS--QKELSGVQNFNGDNSNIQ-------------SL-AGMQFFTNLKELHLSHNQISDLSPLK 82 (263)
T ss_dssp HHHHHHHTCS-CTTSEEC--HHHHTTCSEEECTTSCCC-------------CC-TTGGGCTTCCEEECCSSCCCCCGGGT
T ss_pred HHHHHHhcCC-Ccccccc--hhhcCcCcEEECcCCCcc-------------cc-hHHhhCCCCCEEECCCCccCCChhhc
Confidence 3444555555 5555552 556666666666666553 11 14555666666666554444433311
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
. +++|+.|+++++ .++.++ .+.. ++|+.|+++++ .+..++ ... .+++|+.|++++|
T Consensus 83 ~-------l~~L~~L~L~~N-~l~~l~--~~~~-~~L~~L~L~~N-~l~~~~--~l~----------~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 83 D-------LTKLEELSVNRN-RLKNLN--GIPS-ACLSRLFLDNN-ELRDTD--SLI----------HLKNLEILSIRNN 138 (263)
T ss_dssp T-------CSSCCEEECCSS-CCSCCT--TCCC-SSCCEEECCSS-CCSBSG--GGT----------TCTTCCEEECTTS
T ss_pred c-------CCCCCEEECCCC-ccCCcC--cccc-CcccEEEccCC-ccCCCh--hhc----------CcccccEEECCCC
Confidence 1 235666666663 334332 1222 56666666663 454442 121 5666666666666
Q ss_pred eecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891 166 KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI 230 (309)
Q Consensus 166 ~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l 230 (309)
+++.++.+..+++|++|++++| .+.++ ..+..+++|+.|+++++ .+...
T Consensus 139 ~i~~~~~l~~l~~L~~L~L~~N-~i~~~--------------~~l~~l~~L~~L~l~~N-~~~~~ 187 (263)
T 1xeu_A 139 KLKSIVMLGFLSKLEVLDLHGN-EITNT--------------GGLTRLKKVNWIDLTGQ-KCVNE 187 (263)
T ss_dssp CCCBCGGGGGCTTCCEEECTTS-CCCBC--------------TTSTTCCCCCEEEEEEE-EEECC
T ss_pred cCCCChHHccCCCCCEEECCCC-cCcch--------------HHhccCCCCCEEeCCCC-cccCC
Confidence 5555555666666666666665 23333 13455666666666664 34433
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=1.4e-13 Score=126.91 Aligned_cols=206 Identities=14% Similarity=0.126 Sum_probs=126.6
Q ss_pred CCCchhhhcCCC----CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccC
Q 035891 19 YKIPGQVISNLK----MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIF 94 (309)
Q Consensus 19 ~~lp~~~i~~L~----~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l 94 (309)
..+|.. +..+. +|++|++++|.+. ...+..+..+++|+.|+++.+.......+ .. +
T Consensus 20 ~~l~~~-l~~l~~~~~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l---~~----l 79 (487)
T 3oja_A 20 SSLKQA-LASLRQSAWNVKELDLSGNPLS------------QISAADLAPFTKLELLNLSSNVLYETLDL---ES----L 79 (487)
T ss_dssp TTHHHH-HHTTSTTGGGCCEEECCSSCCC------------CCCGGGGTTCTTCCEEECTTSCCEEEEEC---TT----C
T ss_pred hhhHHH-HHHhcccCCCccEEEeeCCcCC------------CCCHHHHhCCCCCCEEEeeCCCCCCCccc---cc----C
Confidence 456765 55554 8999999999996 44557789999999999986665543332 22 4
Q ss_pred CCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc----------cccCC-CcccccCcceEEEe
Q 035891 95 SNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE----------VKRIR-ETHGFFSLHKVSIW 163 (309)
Q Consensus 95 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~----------~~~~~-~~~~~~~L~~L~l~ 163 (309)
++|+.|+++++ .+..++ ..++|+.|+++++ .+..++......+ .+..+ ....+++|+.|+++
T Consensus 80 ~~L~~L~Ls~N-~l~~l~-----~~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 80 STLRTLDLNNN-YVQELL-----VGPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp TTCCEEECCSS-EEEEEE-----ECTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CCCCEEEecCC-cCCCCC-----CCCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 47888888875 333332 2366777777763 4444443211100 00000 00135566666666
Q ss_pred CceecccC--cc-CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCc
Q 035891 164 GSKLRHVT--WL-ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHL 240 (309)
Q Consensus 164 ~c~l~~l~--~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L 240 (309)
+|.+..++ .+ ..+++|++|++++|. +..++ ....+++|++|+++++ .++.++.....+++|
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~--------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--------------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGV 216 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--------------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTC
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCc-ccccc--------------ccccCCCCCEEECCCC-CCCCCCHhHcCCCCc
Confidence 66333321 12 245666666665553 33332 3445889999999985 788887777788999
Q ss_pred cEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891 241 KELEVNLCPKLEKLPFDCTSGQERKLIIK 269 (309)
Q Consensus 241 ~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 269 (309)
+.|++++| .+..+|...... ..++.+.
T Consensus 217 ~~L~Ls~N-~l~~lp~~l~~l-~~L~~L~ 243 (487)
T 3oja_A 217 TWISLRNN-KLVLIEKALRFS-QNLEHFD 243 (487)
T ss_dssp SEEECTTS-CCCEECTTCCCC-TTCCEEE
T ss_pred cEEEecCC-cCcccchhhccC-CCCCEEE
Confidence 99999996 677788765544 4444443
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.9e-13 Score=128.92 Aligned_cols=151 Identities=21% Similarity=0.322 Sum_probs=122.6
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
|+.+.+|++|+|++| .+..+|. +..+++|++|++++|.+. . +..+..+++|+.|+++.+....
T Consensus 61 l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~-------------~-l~~l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIK-------------D-LSSLKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp GGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCC-------------C-CTTSTTCTTCCEEECTTSCCCC
T ss_pred HccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCC-------------C-ChhhccCCCCCEEEecCCCCCC
Confidence 356899999999999 9999987 899999999999999985 2 2468899999999998776665
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV 160 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L 160 (309)
++.+.. +++|+.|++++|. +..+ ..+..+++|+.|++++| .+..++. .. .+++|+.|
T Consensus 124 l~~l~~-------l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~----------~l~~L~~L 180 (605)
T 1m9s_A 124 INGLVH-------LPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LA----------GLTKLQNL 180 (605)
T ss_dssp CGGGGG-------CTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GT----------TCTTCCEE
T ss_pred CccccC-------CCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCC-cCCCchh--hc----------cCCCCCEE
Confidence 544333 4579999999964 4555 46788999999999985 6666544 22 78999999
Q ss_pred EEeCceecccCccCCCCCccEEEEEcCcccc
Q 035891 161 SIWGSKLRHVTWLILAPNLKHIEVYNCRYLD 191 (309)
Q Consensus 161 ~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~ 191 (309)
++++|.+..++.+..+++|+.|+|++|....
T Consensus 181 ~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 181 YLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred ECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 9999988888888899999999999886443
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=3.6e-13 Score=109.93 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=79.6
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS 87 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~ 87 (309)
+.++.+++ .+..+|.+ + .++|++|++++|.+. ......++.+++|+.|++..+....++... .
T Consensus 10 ~~v~c~~~-~l~~~p~~-~--~~~l~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~ 72 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTG-I--PAQTTYLDLETNSLK------------SLPNGVFDELTSLTQLYLGGNKLQSLPNGV-F 72 (208)
T ss_dssp TEEECCSS-CCSSCCSC-C--CTTCSEEECCSSCCC------------CCCTTTTTTCTTCSEEECCSSCCCCCCTTT-T
T ss_pred CEEEecCC-CccCCCCC-C--CCCCcEEEcCCCccC------------cCChhhhcccccCcEEECCCCccCccChhh-c
Confidence 56777777 77788865 3 467888888888875 222233566677777766544333221100 0
Q ss_pred cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891 88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL 167 (309)
Q Consensus 88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l 167 (309)
.. +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++..... .+++|+.|++++|.+
T Consensus 73 ~~----l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 73 NK----LTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFD----------KLTQLKDLRLYQNQL 136 (208)
T ss_dssp TT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred CC----CCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhc----------cCCcCCEEECCCCcc
Confidence 01 234666666653 33444323345556666666665 345544443332 455666666666644
Q ss_pred cccCc--cCCCCCccEEEEEcC
Q 035891 168 RHVTW--LILAPNLKHIEVYNC 187 (309)
Q Consensus 168 ~~l~~--l~~l~~L~~L~l~~c 187 (309)
..++. +..+++|++|+++++
T Consensus 137 ~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 137 KSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SCCCTTTTTTCTTCCEEECCSC
T ss_pred ceeCHHHhccCCCccEEEecCC
Confidence 44442 344556666666554
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=2.9e-13 Score=109.58 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=98.2
Q ss_pred hccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccC
Q 035891 63 LGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAG 142 (309)
Q Consensus 63 ~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 142 (309)
+.+++|+.|+++.+....++.+.. +++|+.|++++| ....+ ..+..+++|+.|+++++ .+.........
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~-------l~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEY-------AHNIKDLTINNI-HATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGG-------CTTCSEEEEESC-CCSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCccChHHHhc-------CCCCCEEEccCC-CCCcc--hhhhcCCCCCEEEeECC-ccCcccChhhc
Confidence 456667777776555444442222 336777888776 44444 35667788888888873 55542223332
Q ss_pred cccccCCCcccccCcceEEEeCceecc--cCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceee
Q 035891 143 EEVKRIRETHGFFSLHKVSIWGSKLRH--VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLS 220 (309)
Q Consensus 143 ~~~~~~~~~~~~~~L~~L~l~~c~l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 220 (309)
.+++|+.|++++|++.. ...+..+++|++|++++|..++++. .+..+++|++|+
T Consensus 110 ----------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--------------~l~~l~~L~~L~ 165 (197)
T 4ezg_A 110 ----------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--------------PLKTLPELKSLN 165 (197)
T ss_dssp ----------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--------------GGGGCSSCCEEE
T ss_pred ----------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--------------hhcCCCCCCEEE
Confidence 67888888888885554 3356778888888888876566653 466788888888
Q ss_pred ccccccccccCCCccCCCCccEEeecCc
Q 035891 221 LYALGNLRSIYPKALPFPHLKELEVNLC 248 (309)
Q Consensus 221 L~~~~~L~~l~~~~~~~~~L~~L~i~~C 248 (309)
+++| .++.++ ....+++|+.|++++.
T Consensus 166 l~~n-~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 166 IQFD-GVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CTTB-CCCCCT-TGGGCSSCCEEEECBC
T ss_pred CCCC-CCcChH-HhccCCCCCEEEeeCc
Confidence 8886 566665 4557788888888775
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=4e-13 Score=109.61 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=118.7
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
..+|++|++++| .++.+|.++++.+++|++|++++|.+. ......+..+++|++|+++.+....++.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQ------------SLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccC------------ccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 457999999999 899998876899999999999999986 2233446889999999998776554432
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW 163 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (309)
.. ... +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++..... .+++|+.|+++
T Consensus 94 ~~-~~~----l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~ 156 (208)
T 2o6s_A 94 GV-FDK----LTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFD----------RLTSLQYIWLH 156 (208)
T ss_dssp TT-TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT----------TCTTCCEEECC
T ss_pred hH-hcC----ccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHHHhc----------cCCCccEEEec
Confidence 11 112 457999999985 56666645678899999999998 577777765554 68999999999
Q ss_pred CceecccCccCCCCCccEEEEEcCccccccc
Q 035891 164 GSKLRHVTWLILAPNLKHIEVYNCRYLDEII 194 (309)
Q Consensus 164 ~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~ 194 (309)
+|.+ ...+++|+.|++..+.....++
T Consensus 157 ~N~~-----~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 157 DNPW-----DCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp SCCB-----CCCTTTTHHHHHHHHHCTTTBB
T ss_pred CCCe-----ecCCCCHHHHHHHHHhCCceee
Confidence 9832 3456888998887765554554
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.42 E-value=7.6e-13 Score=125.35 Aligned_cols=222 Identities=16% Similarity=0.139 Sum_probs=144.2
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
.+..|+.+++.++ .....+. ...+++|++|++++|.+... .........+.+|+.+++..+......
T Consensus 347 ~l~~L~~l~l~~n-~~~~~~~--~~~l~~L~~L~ls~n~l~~~----------~~~~~~~~~~~~L~~L~~~~~~~~~~~ 413 (635)
T 4g8a_A 347 KLKSLKRLTFTSN-KGGNAFS--EVDLPSLEFLDLSRNGLSFK----------GCCSQSDFGTISLKYLDLSFNGVITMS 413 (635)
T ss_dssp BCTTCCEEEEESC-CSCCBCC--CCBCTTCCEEECCSSCCBEE----------EECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred cchhhhhcccccc-cCCCCcc--cccccccccchhhccccccc----------cccccchhhhhhhhhhhcccccccccc
Confidence 4677888888888 6666554 46899999999998887421 234455667788888877544433322
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.. ... +++|+.+++..++.....+...+..+++++.++++. +.+..+...... .+++|+.|++
T Consensus 414 ~~--~~~----l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~-n~l~~~~~~~~~----------~~~~L~~L~L 476 (635)
T 4g8a_A 414 SN--FLG----LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFN----------GLSSLEVLKM 476 (635)
T ss_dssp SC--CTT----CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT-SCCEECCTTTTT----------TCTTCCEEEC
T ss_pred cc--ccc----cccccchhhhhccccccccccccccccccccccccc-cccccccccccc----------cchhhhhhhh
Confidence 11 111 336888887765544444434566777888888877 455555544443 6788888888
Q ss_pred eCc-eeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCC
Q 035891 163 WGS-KLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFP 238 (309)
Q Consensus 163 ~~c-~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~ 238 (309)
++| ....+ | .+..+++|++|++++| .++.+++ ..+..+++|++|+|+++ +++.++...+ .++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLN 542 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCT
T ss_pred hhcccccccCchhhhhccccCEEECCCC-ccCCcCh------------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCC
Confidence 888 33332 2 4567788888888877 4555543 45677888888888885 6777766544 678
Q ss_pred CccEEeecCcccCCCC-CCCCCCCCCcceEEE
Q 035891 239 HLKELEVNLCPKLEKL-PFDCTSGQERKLIIK 269 (309)
Q Consensus 239 ~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~~~ 269 (309)
+|+.|+++++ +++.+ |..+.....+++.+.
T Consensus 543 ~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 543 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp TCCEEECTTS-CCCBCCSSCTTCCCTTCCEEE
T ss_pred CCCEEECCCC-cCCCCCHHHHHhhhCcCCEEE
Confidence 8888888886 55555 333444434555554
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=1.2e-13 Score=117.06 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=111.6
Q ss_pred CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891 3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH 82 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 82 (309)
++.+|++|++++| .++.+| + +..+++|++|++++|.+. ..+. +..+++|+.|+++.+....++
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~-------------~~~~-l~~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQIS-------------DLSP-LKDLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCC-------------CCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred hcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccC-------------CChh-hccCCCCCEEECCCCccCCcC
Confidence 4678999999998 888888 3 888999999999998885 2223 788899999999877666555
Q ss_pred hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891 83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI 162 (309)
Q Consensus 83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 162 (309)
.... ++|+.|+++++ .++.+ +.+..+++|+.|++++ +.++.++ ... .+++|+.|++
T Consensus 102 ~~~~--------~~L~~L~L~~N-~l~~~--~~l~~l~~L~~L~Ls~-N~i~~~~--~l~----------~l~~L~~L~L 157 (263)
T 1xeu_A 102 GIPS--------ACLSRLFLDNN-ELRDT--DSLIHLKNLEILSIRN-NKLKSIV--MLG----------FLSKLEVLDL 157 (263)
T ss_dssp TCCC--------SSCCEEECCSS-CCSBS--GGGTTCTTCCEEECTT-SCCCBCG--GGG----------GCTTCCEEEC
T ss_pred cccc--------CcccEEEccCC-ccCCC--hhhcCcccccEEECCC-CcCCCCh--HHc----------cCCCCCEEEC
Confidence 4333 16999999985 45555 3577888999999988 5677664 222 6889999999
Q ss_pred eCceecccCccCCCCCccEEEEEcCc
Q 035891 163 WGSKLRHVTWLILAPNLKHIEVYNCR 188 (309)
Q Consensus 163 ~~c~l~~l~~l~~l~~L~~L~l~~c~ 188 (309)
++|.+..++.+..+++|+.|+++++.
T Consensus 158 ~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 158 HGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CCCcCcchHHhccCCCCCEEeCCCCc
Confidence 99877666677888999999998875
No 99
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=2.4e-12 Score=121.91 Aligned_cols=203 Identities=16% Similarity=0.106 Sum_probs=147.5
Q ss_pred CCCCCCcEEecCCCcCCCC---CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891 2 KYLVNLKCLNLEYTYRIYK---IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF 78 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~---lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~ 78 (309)
..+.+|++|++++| .+.. .+.. +..+.+|++|++..+... .....+..+++|+.+++..+..
T Consensus 368 ~~l~~L~~L~ls~n-~l~~~~~~~~~-~~~~~~L~~L~~~~~~~~-------------~~~~~~~~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 368 VDLPSLEFLDLSRN-GLSFKGCCSQS-DFGTISLKYLDLSFNGVI-------------TMSSNFLGLEQLEHLDFQHSNL 432 (635)
T ss_dssp CBCTTCCEEECCSS-CCBEEEECCHH-HHSCSCCCEEECCSCSEE-------------EECSCCTTCTTCCEEECTTSEE
T ss_pred ccccccccchhhcc-ccccccccccc-hhhhhhhhhhhccccccc-------------cccccccccccccchhhhhccc
Confidence 35788999999998 6653 4555 778899999999888773 4455667788999988754443
Q ss_pred hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcc
Q 035891 79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH 158 (309)
Q Consensus 79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 158 (309)
........... +++++.++++.+. +.......+..+++|+.|+++++.....+....+. .+++|+
T Consensus 433 ~~~~~~~~~~~----l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~----------~l~~L~ 497 (635)
T 4g8a_A 433 KQMSEFSVFLS----LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT----------ELRNLT 497 (635)
T ss_dssp ESTTSSCTTTT----CTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT----------TCTTCC
T ss_pred ccccccccccc----ccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhh----------hccccC
Confidence 33332222222 4468888888743 44444346677889999999986656655555554 789999
Q ss_pred eEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-
Q 035891 159 KVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL- 235 (309)
Q Consensus 159 ~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~- 235 (309)
.|++++|+++.++ .+..+++|++|+|++| .++.+++ ..+..+++|++|+++++ +++.++....
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~ 563 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT------------FPYKCLNSLQVLDYSLN-HIMTSKKQELQ 563 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCC------------GGGTTCTTCCEEECTTS-CCCBCCSSCTT
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCCh------------hHHhCCCCCCEEECCCC-cCCCCCHHHHH
Confidence 9999999777764 4678899999999887 4665543 45678899999999995 7877766544
Q ss_pred CC-CCccEEeecCc
Q 035891 236 PF-PHLKELEVNLC 248 (309)
Q Consensus 236 ~~-~~L~~L~i~~C 248 (309)
.+ ++|+.|+++++
T Consensus 564 ~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 564 HFPSSLAFLNLTQN 577 (635)
T ss_dssp CCCTTCCEEECTTC
T ss_pred hhhCcCCEEEeeCC
Confidence 55 68999999875
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=3e-14 Score=127.45 Aligned_cols=214 Identities=18% Similarity=0.159 Sum_probs=137.4
Q ss_pred CCCCCcEEecCCCcCCCCC-----chhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891 3 YLVNLKCLNLEYTYRIYKI-----PGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS 77 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~l-----p~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~ 77 (309)
.+++|++|++++| .+... +.. +.++++|++|++++|.+..+...+ ......+...+..+++|+.|+++.+.
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~--~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEI--PEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGS--HHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHH-HHhCCCccEEeCcccccCccccch--hHHHHHHHHHHhhCCcccEEECCCCc
Confidence 4678999999999 77753 332 668999999999988654221100 00001222345788999999998766
Q ss_pred chh-----hhhhcCCcCccccCCCcCeEEEecCCCCCeecccC----cccc---------ccCCEEEEecCCCCce--EE
Q 035891 78 FAA-----LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFT----LASL---------RHLEALDMTNCKDLEE--ME 137 (309)
Q Consensus 78 ~~~-----l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~----l~~l---------~~L~~L~l~~~~~l~~--l~ 137 (309)
... ++.... . +++|+.|++++|.. ....... +..+ ++|+.|+++++ .+.. ++
T Consensus 106 l~~~~~~~l~~~l~--~----~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 177 (386)
T 2ca6_A 106 FGPTAQEPLIDFLS--K----HTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMK 177 (386)
T ss_dssp CCTTTHHHHHHHHH--H----CTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHH
T ss_pred CCHHHHHHHHHHHH--h----CCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHH
Confidence 553 222211 1 34799999998753 3222112 3333 89999999985 4431 21
Q ss_pred c--CccCcccccCCCcccccCcceEEEeCceecc------cC-ccCCCCCccEEEEEcCccc----cccccccccCCcCc
Q 035891 138 I--DYAGEEVKRIRETHGFFSLHKVSIWGSKLRH------VT-WLILAPNLKHIEVYNCRYL----DEIISLEKLGEVPS 204 (309)
Q Consensus 138 ~--~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~------l~-~l~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~~ 204 (309)
. .... .+++|++|++++|++.. ++ .+..+++|++|++++|..- ..++
T Consensus 178 ~l~~~l~----------~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~---------- 237 (386)
T 2ca6_A 178 EWAKTFQ----------SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA---------- 237 (386)
T ss_dssp HHHHHHH----------HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----------
T ss_pred HHHHHHH----------hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----------
Confidence 1 1111 57799999999996552 23 5778899999999988632 2232
Q ss_pred ccccCCccCCccceeecccccccccc-----CCCc--cCCCCccEEeecCcccCCC
Q 035891 205 EEMQNLFPFARLESLSLYALGNLRSI-----YPKA--LPFPHLKELEVNLCPKLEK 253 (309)
Q Consensus 205 ~~~~~~~~~~~L~~L~L~~~~~L~~l-----~~~~--~~~~~L~~L~i~~C~~L~~ 253 (309)
..+..+++|++|++++| .++.. +... ..+++|+.|++++| .+..
T Consensus 238 ---~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~ 288 (386)
T 2ca6_A 238 ---IALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIEL 288 (386)
T ss_dssp ---HHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBH
T ss_pred ---HHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCH
Confidence 34678899999999997 45443 2222 23899999999987 3443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=3.2e-12 Score=105.96 Aligned_cols=147 Identities=17% Similarity=0.149 Sum_probs=83.3
Q ss_pred CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891 7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT 86 (309)
Q Consensus 7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~ 86 (309)
.+.++.+++ .+..+|.+ +. ++|++|++++|.+. ...+..+..+++|+.|+++.+....++...
T Consensus 21 ~~~v~c~~~-~l~~ip~~-~~--~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~- 83 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG-IP--TNAQILYLHDNQIT------------KLEPGVFDSLINLKELYLGSNQLGALPVGV- 83 (229)
T ss_dssp TTEEECTTS-CCSSCCSC-CC--TTCSEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT-
T ss_pred CCEeEccCC-CcCccCCC-CC--CCCCEEEcCCCccC------------ccCHHHhhCccCCcEEECCCCCCCCcChhh-
Confidence 457888888 88999986 43 88999999999986 334555677777777777655433222100
Q ss_pred CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891 87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK 166 (309)
Q Consensus 87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 166 (309)
... +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++..+. .+++|+.|++++|+
T Consensus 84 ~~~----l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~-----------~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 84 FDS----LTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIE-----------RLTHLTHLALDQNQ 146 (229)
T ss_dssp TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGG-----------GCTTCSEEECCSSC
T ss_pred ccc----CCCcCEEECCCC-cCCccChhHhCcchhhCeEeccC-CcccccCcccc-----------cCCCCCEEECCCCc
Confidence 001 234556666553 34444333345555555555555 34444443332 45555555555554
Q ss_pred ecccC--ccCCCCCccEEEEEcC
Q 035891 167 LRHVT--WLILAPNLKHIEVYNC 187 (309)
Q Consensus 167 l~~l~--~l~~l~~L~~L~l~~c 187 (309)
+..++ .+..+++|++|++.++
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCccCHHHHhCCCCCCEEEeeCC
Confidence 44443 2344555555555544
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=4.3e-12 Score=104.55 Aligned_cols=147 Identities=12% Similarity=0.213 Sum_probs=77.7
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS 87 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~ 87 (309)
+.++.+++ .++.+|.. +. ++|++|++++|.+. ......+..+++|+.|+++.+....+..-
T Consensus 14 ~~v~c~~~-~l~~iP~~-l~--~~l~~L~l~~n~i~------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~--- 74 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTN-LP--ETITEIRLEQNTIK------------VIPPGAFSPYKKLRRIDLSNNQISELAPD--- 74 (220)
T ss_dssp TEEECTTS-CCSSCCSS-CC--TTCCEEECCSSCCC------------EECTTSSTTCTTCCEEECCSSCCCEECTT---
T ss_pred CEEEcCCC-CcCcCCCc-cC--cCCCEEECCCCcCC------------CcCHhHhhCCCCCCEEECCCCcCCCcCHH---
Confidence 56788888 88888876 44 68999999998885 32333566667777776654433322100
Q ss_pred cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891 88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL 167 (309)
Q Consensus 88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l 167 (309)
.+.+ +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++|++
T Consensus 75 -~~~~-l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 75 -AFQG-LRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQ----------DLHNLNLLSLYDNKL 140 (220)
T ss_dssp -TTTT-CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred -HhhC-CcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcC----------CCCCCCEEECCCCcC
Confidence 0010 224555555552 33444333344455555555555 344444333332 445555555555544
Q ss_pred cccC--ccCCCCCccEEEEEcC
Q 035891 168 RHVT--WLILAPNLKHIEVYNC 187 (309)
Q Consensus 168 ~~l~--~l~~l~~L~~L~l~~c 187 (309)
+.++ .+..+++|++|+++++
T Consensus 141 ~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 141 QTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCCTTTTTTCTTCCEEECCSS
T ss_pred CEECHHHHhCCCCCCEEEeCCC
Confidence 4443 1334455555555443
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=3.1e-12 Score=113.36 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=116.9
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhh-ccCCCceEEEEEecchhhhhhcC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELL-GLERLNVLTITLQSFAALHRLLT 86 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~l~~~~~ 86 (309)
++++.+++ .++.+|.. +. ..+++|++++|.+. ......+. .+++|+.|+++.+....+..- .
T Consensus 21 ~~l~c~~~-~l~~iP~~-~~--~~l~~L~Ls~N~l~------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~ 83 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS-LP--SYTALLDLSHNNLS------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSE-A 83 (361)
T ss_dssp TEEECCSS-CCSSCCSS-CC--TTCSEEECCSSCCC------------EECTTSSSSCCTTCCEEECCSSCCCEECTT-T
T ss_pred CEEEeCCC-CcCccCcc-CC--CCCCEEECCCCCCC------------ccChhhhhhcccccCEEECCCCcCCccChh-h
Confidence 57888888 88888876 43 45888999988886 22333355 788899998876665544321 0
Q ss_pred CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891 87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK 166 (309)
Q Consensus 87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 166 (309)
+.. +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..+....+. .+++|+.|++++|+
T Consensus 84 ~~~----l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~----------~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 84 FVP----VPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFE----------DMAQLQKLYLSQNQ 147 (361)
T ss_dssp TTT----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTT----------TCTTCCEEECCSSC
T ss_pred ccC----CCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhC----------CcccCCEEECCCCc
Confidence 112 447899999884 56777655678888999999988 578877665554 78899999999987
Q ss_pred ecccCcc-----CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCc--cceeeccc
Q 035891 167 LRHVTWL-----ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFAR--LESLSLYA 223 (309)
Q Consensus 167 l~~l~~l-----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~L~~ 223 (309)
+..+|.. ..+++|++|+|+++ .++.++. ..+..++. |+.|++.+
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL------------TDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSS-CCCCCCH------------HHHHHSCHHHHTTEECCS
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCH------------HHhhhccHhhcceEEecC
Confidence 7777632 45889999999886 4555432 23344554 36677765
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=1.1e-13 Score=122.68 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=93.2
Q ss_pred CCCCcEEecCCCcCCCCCch----hhhcCCC-CCceEEecccCCCCccCCccccCCcccchhhhhcc-----CCCceEEE
Q 035891 4 LVNLKCLNLEYTYRIYKIPG----QVISNLK-MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGL-----ERLNVLTI 73 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~----~~i~~L~-~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L-----~~L~~L~l 73 (309)
..+|++|++++| .++..+. +.+..++ +|++|++++|.+. ...+..+..+ ++|+.|++
T Consensus 21 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~------------~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 21 PHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLG------------FKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG------------GSCHHHHHHHHHTSCTTCCEEEC
T ss_pred CCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCC------------HHHHHHHHHHHhccCCCccEEEC
Confidence 456999999999 8888775 4578888 8999999999886 3334444443 88888888
Q ss_pred EEecchhhh--hhcC-CcCccccCCCcCeEEEecCCCCCeecccCc----cc-cccCCEEEEecCCCCceEEcCccCccc
Q 035891 74 TLQSFAALH--RLLT-SPSLQSIFSNTPSLCLRNCHSLSSLSVFTL----AS-LRHLEALDMTNCKDLEEMEIDYAGEEV 145 (309)
Q Consensus 74 ~~~~~~~l~--~~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l----~~-l~~L~~L~l~~~~~l~~l~~~~~~~~~ 145 (309)
+.+...... .+.. .... .++|+.|++++|. +...+...+ .. .++|+.|+++++ .+.........
T Consensus 88 s~n~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~--- 159 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAI---PFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELI--- 159 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTS---CTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHH---
T ss_pred cCCcCChHHHHHHHHHHHhC---CCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHH---
Confidence 766654321 1111 0111 0268888888854 344332222 22 247888888874 44432211110
Q ss_pred ccCCCcccc-cCcceEEEeCceecccC------ccCCC-CCccEEEEEcCc
Q 035891 146 KRIRETHGF-FSLHKVSIWGSKLRHVT------WLILA-PNLKHIEVYNCR 188 (309)
Q Consensus 146 ~~~~~~~~~-~~L~~L~l~~c~l~~l~------~l~~l-~~L~~L~l~~c~ 188 (309)
..+. .+ ++|++|++++|++.... .+... ++|++|++++|.
T Consensus 160 ~~l~---~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 160 QILA---AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHh---cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 0000 12 37777777777554433 12233 377777776664
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=1.7e-12 Score=115.10 Aligned_cols=157 Identities=13% Similarity=0.195 Sum_probs=119.2
Q ss_pred CCCcEEecCCCcCCCCCchhhhc-CCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVIS-NLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
..+++|++++| .++.++.+.+. ++++|++|++++|.+. ...+..+..+++|+.|+++.+....+..
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~------------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN------------FISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCC------------ccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 45899999999 99999887566 9999999999999996 3344568899999999998776654432
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW 163 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (309)
.. ... +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++...+.. ...+++|+.|+++
T Consensus 106 ~~-~~~----l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~-------~~~l~~L~~L~L~ 171 (361)
T 2xot_A 106 FL-FSD----LQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKD-------GNKLPKLMLLDLS 171 (361)
T ss_dssp TT-TTT----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC-----------CTTCCEEECC
T ss_pred HH-hCC----CcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcC-------cccCCcCCEEECC
Confidence 11 112 457999999995 56666546788999999999998 6788877655310 0058999999999
Q ss_pred CceecccC--ccCCCCC--ccEEEEEcCc
Q 035891 164 GSKLRHVT--WLILAPN--LKHIEVYNCR 188 (309)
Q Consensus 164 ~c~l~~l~--~l~~l~~--L~~L~l~~c~ 188 (309)
+|++..++ .+..++. ++.|++.+++
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 99888877 3456666 4889998764
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=5e-12 Score=104.12 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=107.7
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.+|.+.+..+++|++|++++|.+. ...+..+..+++|+.|+++.+....++..
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQIS------------ELAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCC------------EECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCC------------CcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 47999999999 999998766899999999999999996 45567889999999999987776654432
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. ... +++|+.|+++++ .+..++...+..+++|+.|++++ +.++.++...+. .+++|+.|++++
T Consensus 99 ~-f~~----l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~ 161 (220)
T 2v9t_B 99 L-FEG----LFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFS----------PLRAIQTMHLAQ 161 (220)
T ss_dssp T-TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT----------TCTTCCEEECCS
T ss_pred H-ccC----CCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHh----------CCCCCCEEEeCC
Confidence 1 111 457999999995 56666546788899999999999 678888776554 789999999999
Q ss_pred cee
Q 035891 165 SKL 167 (309)
Q Consensus 165 c~l 167 (309)
|.+
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 844
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=1e-13 Score=123.00 Aligned_cols=218 Identities=13% Similarity=0.061 Sum_probs=134.9
Q ss_pred CCC-CCcEEecCCCcCCCCCchhhhcCC-----CCCceEEecccCCCCccCCccccCCcccchhhhhcc-CCCceEEEEE
Q 035891 3 YLV-NLKCLNLEYTYRIYKIPGQVISNL-----KMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGL-ERLNVLTITL 75 (309)
Q Consensus 3 ~L~-~Lr~L~l~~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L-~~L~~L~l~~ 75 (309)
++. +|++|++++| .++......+..+ ++|++|++++|.+... ....+...+..+ ++|+.|+++.
T Consensus 48 ~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~ 118 (362)
T 3goz_A 48 NTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK--------SSDELVKTLAAIPFTITVLDLGW 118 (362)
T ss_dssp TCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--------CHHHHHHHHHTSCTTCCEEECCS
T ss_pred hCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChH--------HHHHHHHHHHhCCCCccEEECcC
Confidence 456 8999999999 8887644446664 9999999999998611 001122235555 8999999987
Q ss_pred ecchhhhh--hcC-CcCccccCCCcCeEEEecCCCCCeeccc----Cccccc-cCCEEEEecCCCCceEEcCccCccccc
Q 035891 76 QSFAALHR--LLT-SPSLQSIFSNTPSLCLRNCHSLSSLSVF----TLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKR 147 (309)
Q Consensus 76 ~~~~~l~~--~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (309)
+....... +.. ...+ .++|+.|++++|. +...... .+..++ +|+.|++++| .+...+...... .
T Consensus 119 N~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~---~ 190 (362)
T 3goz_A 119 NDFSSKSSSEFKQAFSNL---PASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAK---F 190 (362)
T ss_dssp SCGGGSCHHHHHHHHTTS---CTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHH---H
T ss_pred CcCCcHHHHHHHHHHHhC---CCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHH---H
Confidence 76553321 111 0111 1279999999864 3322211 233444 8999999985 555444321110 0
Q ss_pred CCCcccc-cCcceEEEeCceecc-----cC-ccCC-CCCccEEEEEcCccccccccccccCCcCcccccCCccCCcccee
Q 035891 148 IRETHGF-FSLHKVSIWGSKLRH-----VT-WLIL-APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESL 219 (309)
Q Consensus 148 ~~~~~~~-~~L~~L~l~~c~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 219 (309)
. ..+ ++|+.|++++|.+.. ++ .+.. .++|++|++++|. +++.....- . .....+++|++|
T Consensus 191 l---~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l------~--~~~~~l~~L~~L 258 (362)
T 3goz_A 191 L---ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENL------K--LLKDSLKHLQTV 258 (362)
T ss_dssp H---HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHH------H--HTTTTTTTCSEE
T ss_pred H---HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHH------H--HHHhcCCCccEE
Confidence 0 023 599999999996665 22 2233 4699999999874 433311000 0 234678899999
Q ss_pred eccccc-------cccccCCCccCCCCccEEeecCcc
Q 035891 220 SLYALG-------NLRSIYPKALPFPHLKELEVNLCP 249 (309)
Q Consensus 220 ~L~~~~-------~L~~l~~~~~~~~~L~~L~i~~C~ 249 (309)
++++|. .+..+......+++|+.|++++++
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 999874 133344444578889999998864
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=5.8e-14 Score=128.34 Aligned_cols=224 Identities=17% Similarity=0.154 Sum_probs=121.2
Q ss_pred CCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccC------------C---ccccCC--cc----c
Q 035891 4 LVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQES------------D---SILFGG--SL----V 57 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~------------~---~~l~~~--~~----~ 57 (309)
..+|++|++++| .++. ++.. +..+++|++|++++|.+..... . .++... .. .
T Consensus 141 ~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 141 QCRLEKLQLEYC-SLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp TCCCCEEECTTS-CCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred CCcceEEECCCC-CCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 456888888888 6664 3443 6667788888888777642110 0 001100 01 1
Q ss_pred chhhhhccCCCceEEEEEecchhh--hhhcCCcCccccCCCcCeEEEecCCCCCeecc----cCccccccCCEEEEecCC
Q 035891 58 LVEELLGLERLNVLTITLQSFAAL--HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV----FTLASLRHLEALDMTNCK 131 (309)
Q Consensus 58 ~~~~l~~L~~L~~L~l~~~~~~~l--~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~ 131 (309)
++..+..+++|+.|+++.+..... ..+.. .+...+++|+.|++++| .++.... ..+..+++|+.|+++++
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n- 294 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCP--GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN- 294 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHH--HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-
Confidence 344566677777777765544321 11111 00001236777887776 3443210 23455677888888774
Q ss_pred CCceEEcCccCcccccCCCcccccCcceEEEeCceeccc-----C-ccCCCCCccEEEEEcCccccccccccccCCcCcc
Q 035891 132 DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHV-----T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSE 205 (309)
Q Consensus 132 ~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l-----~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 205 (309)
.+...+...... ... ...++|++|++++|.+... + .+..+++|++|++++|. +++.....- .
T Consensus 295 ~i~~~~~~~l~~---~l~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l------~ 362 (461)
T 1z7x_W 295 ELGDEGARLLCE---TLL--EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVREL------C 362 (461)
T ss_dssp CCHHHHHHHHHH---HHT--STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHH------H
T ss_pred CCchHHHHHHHH---Hhc--cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHH------H
Confidence 443322211100 000 0236888888888854432 1 34566888888888873 433211000 0
Q ss_pred cccCC-ccCCccceeecccccccc-----ccCCCccCCCCccEEeecCc
Q 035891 206 EMQNL-FPFARLESLSLYALGNLR-----SIYPKALPFPHLKELEVNLC 248 (309)
Q Consensus 206 ~~~~~-~~~~~L~~L~L~~~~~L~-----~l~~~~~~~~~L~~L~i~~C 248 (309)
..+ ...++|++|++++| .++ .++.....+++|++|++++|
T Consensus 363 --~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 363 --QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp --HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred --HHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 011 12678999999987 455 44444446889999999887
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=100.81 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=81.4
Q ss_pred CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEEEEecchhhhhhc
Q 035891 7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
-+.++++++ .++.+|.. +. ..+++|++++|.+. ...+ ..+..+++|+.|+++.+....+..-
T Consensus 13 ~~~l~~s~n-~l~~iP~~-~~--~~~~~L~L~~N~l~------------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~- 75 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEH-IP--QYTAELRLNNNEFT------------VLEATGIFKKLPQLRKINFSNNKITDIEEG- 75 (220)
T ss_dssp TTEEECCSS-CCSSCCSC-CC--TTCSEEECCSSCCC------------EECCCCCGGGCTTCCEEECCSSCCCEECTT-
T ss_pred CCEeEeCCC-CcccCccC-CC--CCCCEEEcCCCcCC------------ccCchhhhccCCCCCEEECCCCcCCEECHH-
Confidence 368899998 89999986 43 45789999999986 2211 2356677777777754443332210
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
.... +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..+....+. .+++|+.|++++|
T Consensus 76 ~~~~----l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~L~~N 139 (220)
T 2v70_A 76 AFEG----ASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFI----------GLSSVRLLSLYDN 139 (220)
T ss_dssp TTTT----CTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSST----------TCTTCSEEECTTS
T ss_pred HhCC----CCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcC----------CCccCCEEECCCC
Confidence 0011 234666666553 33444323445555666666655 344444333332 4555556665555
Q ss_pred eecccC--ccCCCCCccEEEEEcC
Q 035891 166 KLRHVT--WLILAPNLKHIEVYNC 187 (309)
Q Consensus 166 ~l~~l~--~l~~l~~L~~L~l~~c 187 (309)
+++.++ .+..+++|++|+++++
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCCEECHHHhcCCCCCCEEEecCc
Confidence 444442 3444555555555554
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=6.6e-12 Score=118.24 Aligned_cols=215 Identities=13% Similarity=0.096 Sum_probs=114.5
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEEEEecch-
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTITLQSFA- 79 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l~~~~~~- 79 (309)
+.+.+|+.|++.++ ....+|.. +..+++|++|++++|.+. ...+ ..+..+++|+.|++. +...
T Consensus 267 ~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~------------~~~~~~~~~~~~~L~~L~L~-~~~~~ 331 (592)
T 3ogk_B 267 VFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLE------------TEDHCTLIQKCPNLEVLETR-NVIGD 331 (592)
T ss_dssp CCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCC------------HHHHHHHHTTCTTCCEEEEE-GGGHH
T ss_pred hccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCC------------HHHHHHHHHhCcCCCEEecc-CccCH
Confidence 34556666766665 55667764 778888999999888864 2222 346677888888876 2222
Q ss_pred -hhhhhcCCcCccccCCCcCeEEEec----------CCCCCeecccC-ccccccCCEEEEecCCCC--------------
Q 035891 80 -ALHRLLTSPSLQSIFSNTPSLCLRN----------CHSLSSLSVFT-LASLRHLEALDMTNCKDL-------------- 133 (309)
Q Consensus 80 -~l~~~~~~~~l~~~l~~L~~L~l~~----------~~~l~~~~~~~-l~~l~~L~~L~l~~~~~l-------------- 133 (309)
.+..+.. . +++|++|++.+ |+.++...... ...+++|+.|++.. +.+
T Consensus 332 ~~l~~~~~--~----~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 332 RGLEVLAQ--Y----CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKN 404 (592)
T ss_dssp HHHHHHHH--H----CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCS
T ss_pred HHHHHHHH--h----CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCC
Confidence 1222211 1 23577777774 55554332222 23355666666632 222
Q ss_pred -ceEEcCcc---Ccccc------cCCCcccccCcceEEEeCc-e-eccc--Ccc-CCCCCccEEEEEcCccccc-ccccc
Q 035891 134 -EEMEIDYA---GEEVK------RIRETHGFFSLHKVSIWGS-K-LRHV--TWL-ILAPNLKHIEVYNCRYLDE-IISLE 197 (309)
Q Consensus 134 -~~l~~~~~---~~~~~------~~~~~~~~~~L~~L~l~~c-~-l~~l--~~l-~~l~~L~~L~l~~c~~l~~-~~~~~ 197 (309)
+.+..... ....+ +......+++|++|+++.| + +.+- ..+ ..+++|++|++++|. +++ .+.
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-- 481 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLM-- 481 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHH--
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHH--
Confidence 22211100 00000 0000003566677776655 2 2211 111 235667777776664 222 111
Q ss_pred ccCCcCcccccCCccCCccceeeccccccccc--cCCCccCCCCccEEeecCcccCCC
Q 035891 198 KLGEVPSEEMQNLFPFARLESLSLYALGNLRS--IYPKALPFPHLKELEVNLCPKLEK 253 (309)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--l~~~~~~~~~L~~L~i~~C~~L~~ 253 (309)
.....+++|++|++++|+ ++. ++.....+++|+.|++++|. +..
T Consensus 482 ----------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 482 ----------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp ----------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ----------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 224567999999999986 442 22223368999999999996 543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=2.1e-11 Score=101.00 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=103.3
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .+..++.+.+..+++|++|++++|.+. ......+..+++|+.|+++.+....++..
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLG------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCC------------CcChhhcccCCCcCEEECCCCcCCccChh
Confidence 67999999999 898885555899999999999999996 22334468899999999987766544321
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. ... +++|+.|+++++ .+..++ ..+..+++|+.|++++ +.+..++..... .+++|+.|++.+
T Consensus 107 ~-~~~----l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~l~~ 168 (229)
T 3e6j_A 107 V-FDR----LVHLKELFMCCN-KLTELP-RGIERLTHLTHLALDQ-NQLKSIPHGAFD----------RLSSLTHAYLFG 168 (229)
T ss_dssp T-TTT----CTTCCEEECCSS-CCCSCC-TTGGGCTTCSEEECCS-SCCCCCCTTTTT----------TCTTCCEEECTT
T ss_pred H-hCc----chhhCeEeccCC-cccccC-cccccCCCCCEEECCC-CcCCccCHHHHh----------CCCCCCEEEeeC
Confidence 1 112 447999999995 566776 5678899999999998 688888766554 789999999999
Q ss_pred cee
Q 035891 165 SKL 167 (309)
Q Consensus 165 c~l 167 (309)
|.+
T Consensus 169 N~~ 171 (229)
T 3e6j_A 169 NPW 171 (229)
T ss_dssp SCB
T ss_pred CCc
Confidence 843
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.24 E-value=2.3e-13 Score=124.36 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=57.6
Q ss_pred chhhhhccCCCceEEEEEecchh--hhhhcCCcCccccCCCcCeEEEecCCCCCeecc----cCccccccCCEEEEecCC
Q 035891 58 LVEELLGLERLNVLTITLQSFAA--LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV----FTLASLRHLEALDMTNCK 131 (309)
Q Consensus 58 ~~~~l~~L~~L~~L~l~~~~~~~--l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~ 131 (309)
++..+..+++|+.|+++.+.... ...+... +....++|+.|++++|. +..... ..+..+++|+.|+++++
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n- 180 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG--LLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN- 180 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH--HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSS-
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHH--HhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCC-
Confidence 45667777888888887655442 1111110 00012257788887763 332211 13445677788877774
Q ss_pred CCceEEcCccCcccccCCCcccccCcceEEEeCceecc-----cC-ccCCCCCccEEEEEcC
Q 035891 132 DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRH-----VT-WLILAPNLKHIEVYNC 187 (309)
Q Consensus 132 ~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~-----l~-~l~~l~~L~~L~l~~c 187 (309)
.+.......... .+. ...++|++|++++|.+.. ++ .+..+++|++|++++|
T Consensus 181 ~i~~~~~~~l~~---~l~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 181 DINEAGVRVLCQ---GLK--DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp BCHHHHHHHHHH---HHH--HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred CcchHHHHHHHH---HHh--cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 233222111100 000 013466666666663333 11 2334566666666555
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=2.6e-11 Score=113.28 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=118.0
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.+| + .+++|++|++++|.+.. ++. +.. +|+.|+++.+....++.
T Consensus 80 ~~L~~L~Ls~N-~l~~ip-~---~l~~L~~L~Ls~N~l~~-------------ip~-l~~--~L~~L~Ls~N~l~~lp~- 137 (571)
T 3cvr_A 80 PQITVLEITQN-ALISLP-E---LPASLEYLDACDNRLST-------------LPE-LPA--SLKHLDVDNNQLTMLPE- 137 (571)
T ss_dssp TTCSEEECCSS-CCSCCC-C---CCTTCCEEECCSSCCSC-------------CCC-CCT--TCCEEECCSSCCSCCCC-
T ss_pred CCCCEEECcCC-CCcccc-c---ccCCCCEEEccCCCCCC-------------cch-hhc--CCCEEECCCCcCCCCCC-
Confidence 67999999999 999999 3 47999999999999862 333 333 99999998776665444
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
. +++|+.|+++++ .++.++. .+++|+.|++++ +.+..++. . . ++|+.|++++
T Consensus 138 ----~----l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~-N~L~~lp~--l-----------~-~~L~~L~Ls~ 189 (571)
T 3cvr_A 138 ----L----PALLEYINADNN-QLTMLPE----LPTSLEVLSVRN-NQLTFLPE--L-----------P-ESLEALDVST 189 (571)
T ss_dssp ----C----CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCS-SCCSCCCC--C-----------C-TTCCEEECCS
T ss_pred ----c----CccccEEeCCCC-ccCcCCC----cCCCcCEEECCC-CCCCCcch--h-----------h-CCCCEEECcC
Confidence 1 347999999995 4566652 568999999998 46776654 2 4 8999999999
Q ss_pred ceecccCccCCCCCc-------cEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 165 SKLRHVTWLILAPNL-------KHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 165 c~l~~l~~l~~l~~L-------~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
|+++.+|. ...+| +.|++++| .++.++ ..+..+++|+.|++++++
T Consensus 190 N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp-------------~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 190 NLLESLPA--VPVRNHHSEETEIFFRCREN-RITHIP-------------ENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCSSCCC--CC--------CCEEEECCSS-CCCCCC-------------GGGGGSCTTEEEECCSSS
T ss_pred CCCCchhh--HHHhhhcccccceEEecCCC-cceecC-------------HHHhcCCCCCEEEeeCCc
Confidence 98888875 22377 99999887 566665 456679999999999964
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=9.6e-12 Score=97.83 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=52.7
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEc-CccCcccccCCCcccccCcceEEEeCceecccCc--
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEI-DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 172 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~-- 172 (309)
+|+.|+++++.-...++ ..+..+++|+.|+++++ .+..++. .... .+++|+.|++++|.+..++.
T Consensus 72 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~----------~l~~L~~L~l~~N~l~~~~~~~ 139 (168)
T 2ell_A 72 KLKKLELSENRIFGGLD-MLAEKLPNLTHLNLSGN-KLKDISTLEPLK----------KLECLKSLDLFNCEVTNLNDYR 139 (168)
T ss_dssp SCCEEEEESCCCCSCCC-HHHHHCTTCCEEECBSS-SCCSSGGGGGGS----------SCSCCCEEECCSSGGGTSTTHH
T ss_pred CCCEEECcCCcCchHHH-HHHhhCCCCCEEeccCC-ccCcchhHHHHh----------cCCCCCEEEeeCCcCcchHHHH
Confidence 46666666643322232 23345777888888774 5655542 2222 67888888888886666553
Q ss_pred ---cCCCCCccEEEEEcCcccccc
Q 035891 173 ---LILAPNLKHIEVYNCRYLDEI 193 (309)
Q Consensus 173 ---l~~l~~L~~L~l~~c~~l~~~ 193 (309)
+..+++|++|++++|. ..++
T Consensus 140 ~~~~~~l~~L~~L~l~~n~-~~~~ 162 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDRE-DQEA 162 (168)
T ss_dssp HHHHTTCSSCCEETTEETT-SCBC
T ss_pred HHHHHhCccCcEecCCCCC-hhhc
Confidence 5678888888888874 3444
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=4.3e-11 Score=98.51 Aligned_cols=134 Identities=10% Similarity=0.156 Sum_probs=104.0
Q ss_pred CCCcEEecCCCcCCCCC-chhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 5 VNLKCLNLEYTYRIYKI-PGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
..+++|++++| .++.+ |.++++.+++|++|++++|.+. ......+..+++|+.|+++.+....+..
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~------------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKIT------------DIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCC------------EECHHHhCCCCCCCEEECCCCccCccCH
Confidence 35789999999 89887 4455889999999999999996 3444578899999999998776655443
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW 163 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (309)
.. ... +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..+....+. .+++|+.|+++
T Consensus 99 ~~-~~~----l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~ 161 (220)
T 2v70_A 99 KM-FKG----LESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFD----------TLHSLSTLNLL 161 (220)
T ss_dssp GG-GTT----CSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTT----------TCTTCCEEECC
T ss_pred hH-hcC----CcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhc----------CCCCCCEEEec
Confidence 11 111 447999999995 45666546788899999999998 678887655554 78999999999
Q ss_pred Cceec
Q 035891 164 GSKLR 168 (309)
Q Consensus 164 ~c~l~ 168 (309)
+|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 99443
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=1.4e-10 Score=91.04 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=97.9
Q ss_pred CcCeEEEecCCCC-CeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecc-cCc-
Q 035891 96 NTPSLCLRNCHSL-SSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRH-VTW- 172 (309)
Q Consensus 96 ~L~~L~l~~~~~l-~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~-l~~- 172 (309)
+|+.|++++|... ..++ ..+..+++|+.|+++++ .+..+ .... .+++|+.|++++|.+.. +|.
T Consensus 25 ~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~----------~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINV-GLISV--SNLP----------KLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp SCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESS-CCCCC--SSCC----------CCSSCCEEEEESCCCCSCCCHH
T ss_pred cCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCC-CCCCh--hhhc----------cCCCCCEEECcCCcCchHHHHH
Confidence 7899999986532 2554 34678899999999985 57766 3333 78999999999996666 553
Q ss_pred cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC----CccCCCCccEEeecCc
Q 035891 173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP----KALPFPHLKELEVNLC 248 (309)
Q Consensus 173 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~----~~~~~~~L~~L~i~~C 248 (309)
...+++|++|++++| .++.++.. ..+..+++|++|+++++ .+..++. ....+++|+.|++++|
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTL-----------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGG-----------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HhhCCCCCEEeccCC-ccCcchhH-----------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 345899999999988 45554210 25678899999999996 6777765 3457899999999998
Q ss_pred ccCCCCCCC
Q 035891 249 PKLEKLPFD 257 (309)
Q Consensus 249 ~~L~~lp~~ 257 (309)
.++.+|..
T Consensus 158 -~~~~~~~~ 165 (168)
T 2ell_A 158 -EDQEAPDS 165 (168)
T ss_dssp -TSCBCCSS
T ss_pred -Chhhcccc
Confidence 45555543
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.7e-10 Score=100.74 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=49.0
Q ss_pred ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccc-eeecccccccccc
Q 035891 154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLE-SLSLYALGNLRSI 230 (309)
Q Consensus 154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~L~~l 230 (309)
+++|+.|++.+|+++.++ .+..+++|+.|++.+. ++.+.. ..+..+++|+ .+.+.+ .++.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~------------~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ------------RVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECT------------TTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehH------------HHhhCChhccEEEEEcc--cceEE
Confidence 556666666666555554 3455666666666553 444432 3455666666 666665 56666
Q ss_pred CCCcc-CCCCccEEeecCcccCCCCCC
Q 035891 231 YPKAL-PFPHLKELEVNLCPKLEKLPF 256 (309)
Q Consensus 231 ~~~~~-~~~~L~~L~i~~C~~L~~lp~ 256 (309)
+...+ .+++|+.+++.. .+++.++.
T Consensus 289 ~~~aF~~c~~L~~l~l~~-n~i~~I~~ 314 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATG-DKITTLGD 314 (329)
T ss_dssp CTTTTTTCTTEEEEEECS-SCCCEECT
T ss_pred chhhhhCCccCCEEEeCC-CccCccch
Confidence 55444 566666666644 24554443
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.13 E-value=3.7e-12 Score=119.94 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=90.3
Q ss_pred CCCCCcEEecCCCcCCCCC---c-----------hhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhh-ccCC
Q 035891 3 YLVNLKCLNLEYTYRIYKI---P-----------GQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELL-GLER 67 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~l---p-----------~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~-~L~~ 67 (309)
++++|++|+++++..+..+ | ..+...+++|++|++++|.+. ...+..+. .+++
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~------------~~~~~~l~~~~~~ 131 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT------------DDCLELIAKSFKN 131 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC------------HHHHHHHHHHCTT
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc------------HHHHHHHHHhCCC
Confidence 3577888888887434322 1 122456788888888888775 45555564 6788
Q ss_pred CceEEEEEec-ch--hhhhhcCCcCccccCCCcCeEEEecCCCCCeeccc----CccccccCCEEEEecCCCCceEEcCc
Q 035891 68 LNVLTITLQS-FA--ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF----TLASLRHLEALDMTNCKDLEEMEIDY 140 (309)
Q Consensus 68 L~~L~l~~~~-~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~l~~l~~~~ 140 (309)
|+.|++..+. .. .++.+.. . +++|++|++++|. +...... ....+++|+.|++++|. ..+....
T Consensus 132 L~~L~L~~~~~~~~~~l~~~~~--~----~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~ 202 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAIAA--T----CRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSA 202 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHHHH--H----CTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHH
T ss_pred CcEEeCCCcCCCCHHHHHHHHH--h----CCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHH
Confidence 8888887442 22 2333321 1 3368888888765 2222111 12356688888888764 1111111
Q ss_pred cCcccccCCCcccccCcceEEEeCc-eecccC-ccCCCCCccEEEEEcC
Q 035891 141 AGEEVKRIRETHGFFSLHKVSIWGS-KLRHVT-WLILAPNLKHIEVYNC 187 (309)
Q Consensus 141 ~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l~-~l~~l~~L~~L~l~~c 187 (309)
... . ...+++|++|++++| .+..++ .+..+++|++|.+..|
T Consensus 203 l~~---l---~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 203 LER---L---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHH---H---HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHH---H---HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 000 0 003578888888877 555443 3445677777765443
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=5.6e-12 Score=118.73 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=73.2
Q ss_pred CcCeEEEecCCCCCeecccCcc-ccccCCEEEEe-----cCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eec
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLA-SLRHLEALDMT-----NCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLR 168 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~ 168 (309)
+|+.|.+. |+.++......+. .+++|+.|++. +|+.+...+.+... ... ...+++|+.|+++++ .-.
T Consensus 373 ~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~--~~l---~~~~~~L~~L~L~~~l~~~ 446 (594)
T 2p1m_B 373 KLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF--GAI---VEHCKDLRRLSLSGLLTDK 446 (594)
T ss_dssp TCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH--HHH---HHHCTTCCEEECCSSCCHH
T ss_pred hHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH--HHH---HhhCCCccEEeecCcccHH
Confidence 56666433 3444433222232 46677777777 45555533321000 000 004677888888664 211
Q ss_pred ccCccCC-CCCccEEEEEcCccccccccccccCCcCcccccCC-ccCCccceeeccccccccccCC--CccCCCCccEEe
Q 035891 169 HVTWLIL-APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL-FPFARLESLSLYALGNLRSIYP--KALPFPHLKELE 244 (309)
Q Consensus 169 ~l~~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~~l~~--~~~~~~~L~~L~ 244 (309)
.++.+.. +++|++|++++|......+ ..+ ..+++|++|++++|+. +.... ....+++|+.|+
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~-------------~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGM-------------HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLW 512 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHH-------------HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEE
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHH-------------HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEe
Confidence 1222333 7888888888775322211 122 5688999999998853 32221 223578999999
Q ss_pred ecCccc
Q 035891 245 VNLCPK 250 (309)
Q Consensus 245 i~~C~~ 250 (309)
+++|+.
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 999865
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.11 E-value=5.3e-12 Score=118.91 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=38.3
Q ss_pred CCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEE
Q 035891 3 YLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTIT 74 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~ 74 (309)
++++|++|++++| .++. ++. ++.++++|++|++++|.+. ..+..++.+++|+.|++.
T Consensus 190 ~~~~L~~L~L~~n-~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~-------------~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMT-EFAKISPKDLET-IARNCRSLVSVKVGDFEIL-------------ELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTC-CCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG-------------GGHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeecc-CCCccCHHHHHH-HHhhCCCCcEEeccCccHH-------------HHHHHHhhhhHHHhhccc
Confidence 4678888888888 6652 333 3567888888888887763 344555556666666654
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=3.2e-11 Score=92.82 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=42.7
Q ss_pred CCCCCcEEecCCCcCCC--CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891 3 YLVNLKCLNLEYTYRIY--KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS 77 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~ 77 (309)
...+|++|++++| .+. .+|.. ++.+++|++|++++|.+. . . ..++.+++|+.|+++.+.
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n~l~------------~-~-~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINVGLT------------S-I-ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTSCCC------------C-C-TTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCCCCC------------C-c-hhhhcCCCCCEEECCCCc
Confidence 3467899999999 777 78875 788999999999998885 1 2 445556666666554433
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=1.5e-10 Score=91.77 Aligned_cols=16 Identities=13% Similarity=-0.083 Sum_probs=8.7
Q ss_pred cCCCCCceEEecccCC
Q 035891 27 SNLKMLEALRMFKCGS 42 (309)
Q Consensus 27 ~~L~~L~~L~l~~~~~ 42 (309)
.++.+|++|++++|.+
T Consensus 16 ~~~~~L~~L~l~~n~l 31 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKI 31 (176)
T ss_dssp ECTTSCEEEECTTSCC
T ss_pred CCcCCceEEEeeCCCC
Confidence 4455555555555555
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=6.8e-10 Score=89.37 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=71.7
Q ss_pred cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891 8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS 87 (309)
Q Consensus 8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~ 87 (309)
++++++++ .++.+|.+ +. ++|++|++++|.+. .++..+..+++|+.|+++.+...
T Consensus 13 ~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~n~i~-------------~ip~~~~~l~~L~~L~Ls~N~i~-------- 67 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKG-IP--RDVTELYLDGNQFT-------------LVPKELSNYKHLTLIDLSNNRIS-------- 67 (193)
T ss_dssp TEEECTTS-CCSSCCSC-CC--TTCCEEECCSSCCC-------------SCCGGGGGCTTCCEEECCSSCCC--------
T ss_pred CEEEcCCC-CCCcCCCC-CC--CCCCEEECCCCcCc-------------hhHHHhhcccCCCEEECCCCcCC--------
Confidence 67889988 89999976 43 68999999999884 34456666677777666544332
Q ss_pred cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891 88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL 167 (309)
Q Consensus 88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l 167 (309)
.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++|.+
T Consensus 68 ----------------------~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~----------~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 68 ----------------------TLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFD----------GLKSLRLLSLHGNDI 114 (193)
T ss_dssp ----------------------CCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred ----------------------EeCHhHccCCCCCCEEECCC-CccCEeCHHHhC----------CCCCCCEEECCCCCC
Confidence 22222344455555555555 344444443332 455555555555544
Q ss_pred cccCc--cCCCCCccEEEEEcC
Q 035891 168 RHVTW--LILAPNLKHIEVYNC 187 (309)
Q Consensus 168 ~~l~~--l~~l~~L~~L~l~~c 187 (309)
..++. +..+++|++|+++++
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 115 SVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS
T ss_pred CeeChhhhhcCccccEEEeCCC
Confidence 44442 344555666655544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=1.1e-09 Score=88.02 Aligned_cols=125 Identities=11% Similarity=0.157 Sum_probs=73.2
Q ss_pred CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchh-hhhccCCCceEEEEEecchhhhhhc
Q 035891 7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVE-ELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
-++++++++ .++.+|.. +.. +|++|++++|.+..+ ... .++.+++|+.|+++.+..
T Consensus 10 ~~~l~~s~~-~l~~ip~~-~~~--~l~~L~l~~n~i~~~------------~~~~~~~~l~~L~~L~Ls~N~l------- 66 (192)
T 1w8a_A 10 GTTVDCTGR-GLKEIPRD-IPL--HTTELLLNDNELGRI------------SSDGLFGRLPHLVKLELKRNQL------- 66 (192)
T ss_dssp TTEEECTTS-CCSSCCSC-CCT--TCSEEECCSCCCCSB------------CCSCSGGGCTTCCEEECCSSCC-------
T ss_pred CCEEEcCCC-CcCcCccC-CCC--CCCEEECCCCcCCcc------------CCccccccCCCCCEEECCCCCC-------
Confidence 378999999 89999986 443 899999999988521 111 255566666665543332
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
+.+....+..+++|+.|++++ +.+..++...+. .+++|+.|++++|
T Consensus 67 -----------------------~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~L~~N 112 (192)
T 1w8a_A 67 -----------------------TGIEPNAFEGASHIQELQLGE-NKIKEISNKMFL----------GLHQLKTLNLYDN 112 (192)
T ss_dssp -----------------------CCBCTTTTTTCTTCCEEECCS-CCCCEECSSSST----------TCTTCCEEECCSS
T ss_pred -----------------------CCcCHhHcCCcccCCEEECCC-CcCCccCHHHhc----------CCCCCCEEECCCC
Confidence 222213444555566666655 455555544333 4566666666666
Q ss_pred eecccC--ccCCCCCccEEEEEcCc
Q 035891 166 KLRHVT--WLILAPNLKHIEVYNCR 188 (309)
Q Consensus 166 ~l~~l~--~l~~l~~L~~L~l~~c~ 188 (309)
++..++ .+..+++|++|++++++
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 113 QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 444332 34455666666665553
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=9.4e-10 Score=87.08 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=73.3
Q ss_pred CcCeEEEecCCCCCeecccCccccc-cCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCc--
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 172 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~-- 172 (309)
+|+.|+++++ .++.+ +.+..+. +|+.|++++ +.+..+ .... .+++|+.|++++|.+..++.
T Consensus 20 ~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~-N~l~~~--~~l~----------~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 20 RDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSD-NEIRKL--DGFP----------LLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp SCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCS-SCCCEE--CCCC----------CCSSCCEEECCSSCCCEECSCH
T ss_pred CceEEEeeCC-CCchh--HHhhhcCCCCCEEECCC-CCCCcc--cccc----------cCCCCCEEECCCCcccccCcch
Confidence 5666777664 33444 2333333 777777777 456665 2222 56777777777775555542
Q ss_pred cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC----ccCCCCccEEeecCc
Q 035891 173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK----ALPFPHLKELEVNLC 248 (309)
Q Consensus 173 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~----~~~~~~L~~L~i~~C 248 (309)
+..+++|++|++++|. ++.++.. ..+..+++|+.|++.++ .+..++.. ...+|+|+.|+++++
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~-----------~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDL-----------DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGG-----------GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhcCCCCCEEECCCCc-CCcchhh-----------HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 3567777777777663 4444310 13556777777777775 45555543 336677777776655
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=3e-09 Score=84.17 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=77.2
Q ss_pred CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891 7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT 86 (309)
Q Consensus 7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~ 86 (309)
.+.++++++ .++.+|.+ + .++|++|++++|.+. ......+..+++|+.|+++
T Consensus 9 ~~~l~~~~~-~l~~~p~~-~--~~~l~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~------------ 60 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTG-I--PSSATRLELESNKLQ------------SLPHGVFDKLTQLTKLSLS------------ 60 (177)
T ss_dssp TTEEECCSS-CCSSCCTT-C--CTTCSEEECCSSCCC------------CCCTTTTTTCTTCSEEECC------------
T ss_pred CCEEEecCC-CCccCCCC-C--CCCCcEEEeCCCccc------------EeCHHHhcCcccccEEECC------------
Confidence 578889988 88999975 3 378999999998885 2222234555555555554
Q ss_pred CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891 87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK 166 (309)
Q Consensus 87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 166 (309)
++ .+..++...+..+++|+.|++++ +.+..++..... .+++|+.|++++|.
T Consensus 61 -----------------~n-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 61 -----------------QN-QIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFD----------KLTQLKELALDTNQ 111 (177)
T ss_dssp -----------------SS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSSC
T ss_pred -----------------CC-cceEeChhHccCCCccCEEECCC-CCccccCHHHhh----------CCcccCEEECcCCc
Confidence 32 23333323345566666666666 455555544433 56677777777775
Q ss_pred ecccCc--cCCCCCccEEEEEcCc
Q 035891 167 LRHVTW--LILAPNLKHIEVYNCR 188 (309)
Q Consensus 167 l~~l~~--l~~l~~L~~L~l~~c~ 188 (309)
+..++. +..+++|++|++++++
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 112 LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceEeCHHHhcCCcccCEEEecCCC
Confidence 555552 3456777777777664
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.92 E-value=5.8e-10 Score=85.66 Aligned_cols=108 Identities=20% Similarity=0.154 Sum_probs=75.8
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
++.+.+|++|++++| .++.+ .. ++.+++|++|++++|.+. ...+..++.+++|+.|+++.+....
T Consensus 38 ~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 38 TDEFEELEFLSTINV-GLTSI-AN-LPKLNKLKKLELSDNRVS------------GGLEVLAEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp CTTCTTCCEEECTTS-CCCCC-TT-CCCCTTCCEEECCSSCCC------------SCTHHHHHHCTTCCEEECTTSCCCS
T ss_pred HhhcCCCcEEECcCC-CCCCc-hh-hhcCCCCCEEECCCCccc------------chHHHHhhhCCCCCEEECCCCcCCC
Confidence 467899999999999 89888 43 899999999999999996 3356667778889998887666555
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeecc---cCccccccCCEEEEe
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV---FTLASLRHLEALDMT 128 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~ 128 (309)
++....... +++|+.|+++++ .+...+. ..+..+++|+.|+++
T Consensus 103 ~~~~~~~~~----l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 103 LSTIEPLKK----LENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHGGGGG----CTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hHHHHHHhh----CCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 432222222 335777777775 3444432 235566677766554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.89 E-value=4.3e-09 Score=84.64 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=74.8
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
.+|++|++++| .++.+|.. +..+++|++|++++|.+. ......+..+++|+.|+++.+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N~i~------------~i~~~~f~~l~~L~~L~Ls~N-------- 88 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNNRIS------------TLSNQSFSNMTQLLTLILSYN-------- 88 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSS--------
T ss_pred CCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCCcCC------------EeCHhHccCCCCCCEEECCCC--------
Confidence 47999999999 99999976 999999999999999996 333344566666666655433
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
.+..++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++
T Consensus 89 ----------------------~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 ----------------------RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFN----------DLSALSHLAIGA 135 (193)
T ss_dssp ----------------------CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTT----------TCTTCCEEECCS
T ss_pred ----------------------ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhh----------cCccccEEEeCC
Confidence 23333323456666777777776 566666655443 567777777777
Q ss_pred ce
Q 035891 165 SK 166 (309)
Q Consensus 165 c~ 166 (309)
|.
T Consensus 136 N~ 137 (193)
T 2wfh_A 136 NP 137 (193)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.86 E-value=7.7e-10 Score=106.66 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=84.4
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
+..+.+|++|+|++| .+..+|.. +.++++|++|++++|.+. .++..+..|++|+.|+++.+....
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGNSLT-------------ELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTSCCS-------------CCCGGGGGGTTCCEEECTTSCCSS
T ss_pred hccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCCcCc-------------ccChhhhCCCCCCEEeCcCCcCCc
Confidence 356788999999999 88899987 778999999999999884 566778889999999997776654
Q ss_pred hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce
Q 035891 81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE 135 (309)
Q Consensus 81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~ 135 (309)
++.. +.. +++|+.|+++++ .+..+| ..+..+++|+.|+++++ .+..
T Consensus 285 lp~~-----~~~-l~~L~~L~L~~N-~l~~lp-~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 285 LPAE-----LGS-CFQLKYFYFFDN-MVTTLP-WEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp CCSS-----GGG-GTTCSEEECCSS-CCCCCC-SSTTSCTTCCCEECTTS-CCCS
T ss_pred cChh-----hcC-CCCCCEEECCCC-CCCccC-hhhhcCCCccEEeCCCC-ccCC
Confidence 4322 111 457999999985 556776 35888899999999984 5543
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=3.2e-09 Score=99.37 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=63.2
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
.|++|++++| .++.+|. ++.+++|++|++++|.+. .++..++.+++|+.|+++.+.
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~Ls~N~-------- 497 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLR-------------ALPPALAALRCLEVLQASDNA-------- 497 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCC-------------CCCGGGGGCTTCCEEECCSSC--------
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCccccc-------------ccchhhhcCCCCCEEECCCCC--------
Confidence 3566666666 6666664 566666666666666663 334455555555555554333
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEE-cCccCcccccCCCcccccCcceEEEeC
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEME-IDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
++.+| .+..+++|+.|++++ +.+..+. ....+ .+++|+.|++++
T Consensus 498 ----------------------l~~lp--~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~----------~l~~L~~L~L~~ 542 (567)
T 1dce_A 498 ----------------------LENVD--GVANLPRLQELLLCN-NRLQQSAAIQPLV----------SCPRLVLLNLQG 542 (567)
T ss_dssp ----------------------CCCCG--GGTTCSSCCEEECCS-SCCCSSSTTGGGG----------GCTTCCEEECTT
T ss_pred ----------------------CCCCc--ccCCCCCCcEEECCC-CCCCCCCCcHHHh----------cCCCCCEEEecC
Confidence 33332 345555666666655 3444442 22222 456666666666
Q ss_pred ceecccCc-----cCCCCCccEEE
Q 035891 165 SKLRHVTW-----LILAPNLKHIE 183 (309)
Q Consensus 165 c~l~~l~~-----l~~l~~L~~L~ 183 (309)
|.+..+|. ...+|+|+.|+
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcCCCCccHHHHHHHHCcccCccC
Confidence 64444431 12256666664
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=1.7e-07 Score=84.00 Aligned_cols=79 Identities=22% Similarity=0.196 Sum_probs=42.4
Q ss_pred cccCcceEEEeCceec-----ccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891 153 GFFSLHKVSIWGSKLR-----HVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG 225 (309)
Q Consensus 153 ~~~~L~~L~l~~c~l~-----~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 225 (309)
.+++|+.+.+.++... .++ .+..+++|+.+++.+ .++.+.. ..+..+++|+.+.|..
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~------------~aF~~c~~L~~l~lp~-- 332 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ------------GLLGGNRKVTQLTIPA-- 332 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT------------TTTTTCCSCCEEEECT--
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh------------hhhcCCCCccEEEECc--
Confidence 4556666665554111 122 234455556555542 2433322 3455667777777753
Q ss_pred cccccCCCcc-CCCCccEEeecCc
Q 035891 226 NLRSIYPKAL-PFPHLKELEVNLC 248 (309)
Q Consensus 226 ~L~~l~~~~~-~~~~L~~L~i~~C 248 (309)
.++.+....+ .+ +|+.+.+.+.
T Consensus 333 ~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 333 NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCEECTTSSSSS-CCCEEEECCS
T ss_pred cccEEcHHhCCCC-CCCEEEEcCC
Confidence 4666666555 44 7777777764
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=9.1e-09 Score=81.33 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=71.3
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR 83 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 83 (309)
..+|++|++++| .++.+|.+.++.+++|++|++++|.+.. .....+..+++|+.|+++.+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~N------- 86 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQS------------LPDGVFDKLTKLTILYLHEN------- 86 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSS-------
T ss_pred CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceE------------eChhHccCCCccCEEECCCC-------
Confidence 368999999999 8999988767999999999999999862 22223455555555555433
Q ss_pred hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891 84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW 163 (309)
Q Consensus 84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (309)
.++.++...+..+++|+.|++++ +.+..++..... .+++|+.|+++
T Consensus 87 -----------------------~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~ 132 (177)
T 2o6r_A 87 -----------------------KLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFD----------RLTSLQKIWLH 132 (177)
T ss_dssp -----------------------CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT----------TCTTCCEEECC
T ss_pred -----------------------CccccCHHHhhCCcccCEEECcC-CcceEeCHHHhc----------CCcccCEEEec
Confidence 23333323345566666666666 355555544433 46677777777
Q ss_pred Cce
Q 035891 164 GSK 166 (309)
Q Consensus 164 ~c~ 166 (309)
+|.
T Consensus 133 ~N~ 135 (177)
T 2o6r_A 133 TNP 135 (177)
T ss_dssp SSC
T ss_pred CCC
Confidence 663
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=2.3e-10 Score=92.50 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891 18 IYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA 80 (309)
Q Consensus 18 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 80 (309)
++.+|.. ++++++|++|++++|.+. .++ .+..+++|+.|+++.+....
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n~l~-------------~l~-~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTNNIE-------------KIS-SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEEEES-------------CCC-CHHHHTTCCEEEEEEEEECS
T ss_pred HhhhhHH-HhcCCCCCEEECCCCCCc-------------ccc-ccccCCCCCEEECCCCCccc
Confidence 4445555 778888888888887774 233 66677777777777665443
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.4e-08 Score=88.56 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=127.2
Q ss_pred CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCcc--------ccCCccc--------chhhhhccCC
Q 035891 4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSI--------LFGGSLV--------LVEELLGLER 67 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~--------l~~~~~~--------~~~~l~~L~~ 67 (309)
+.+|+.|++.. .++.|+..+|..|++|+.+++.++.+..++.++. +...... ....+..+..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 78999999987 5888998889999999999999888764443310 0000000 0000112223
Q ss_pred Cc-eEEEEEecchhhhhhcC--CcCccccCCCcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCceEEcCccCc
Q 035891 68 LN-VLTITLQSFAALHRLLT--SPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEEMEIDYAGE 143 (309)
Q Consensus 68 L~-~L~l~~~~~~~l~~~~~--~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~ 143 (309)
|+ .+.+ .....++.... ... ..++..+.+.+.- .......+ ..+++|+.+++.. +.++.++...+.
T Consensus 178 L~~~i~~--~~~~~l~~~~~~~~~~----~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~- 247 (329)
T 3sb4_A 178 LETTIQV--GAMGKLEDEIMKAGLQ----PRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFA- 247 (329)
T ss_dssp CEEEEEE--CTTCCHHHHHHHTTCC----GGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTT-
T ss_pred cceeEEe--cCCCcHHHHHhhcccC----ccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhh-
Confidence 33 1211 11122221110 001 1245666666531 11111112 2368899999997 568899887775
Q ss_pred ccccCCCcccccCcceEEEeCceecccC--ccCCCCCcc-EEEEEcCccccccccccccCCcCcccccCCccCCccceee
Q 035891 144 EVKRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLK-HIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLS 220 (309)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 220 (309)
.+.+|+.|++.++ ++.++ .+..+++|+ .+++.+ .++.+.. ..+..+++|+.+.
T Consensus 248 ---------~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~------------~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 248 ---------QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF------------GAFMGCDNLRYVL 303 (329)
T ss_dssp ---------TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECT------------TTTTTCTTEEEEE
T ss_pred ---------CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEch------------hhhhCCccCCEEE
Confidence 7889999999887 44444 467788999 999976 5666643 4678889999999
Q ss_pred ccccccccccCCCcc-CCCCccEEee
Q 035891 221 LYALGNLRSIYPKAL-PFPHLKELEV 245 (309)
Q Consensus 221 L~~~~~L~~l~~~~~-~~~~L~~L~i 245 (309)
+.. ..++.++...+ .+++|+.++.
T Consensus 304 l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred eCC-CccCccchhhhcCCcchhhhcc
Confidence 876 47888888666 7788888763
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.78 E-value=1.2e-08 Score=81.97 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=76.2
Q ss_pred CCcEEecCCCcCCCCCchh-hhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891 6 NLKCLNLEYTYRIYKIPGQ-VISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL 84 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~ 84 (309)
+|++|++++| .++.++.. +++.+++|++|++++|.+. ...+..+..+++|+.|+++.+
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N-------- 88 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLT------------GIEPNAFEGASHIQELQLGEN-------- 88 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCC------------CBCTTTTTTCTTCCEEECCSC--------
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCC------------CcCHhHcCCcccCCEEECCCC--------
Confidence 7999999999 89988763 5899999999999999996 334555666666666666433
Q ss_pred cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891 85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG 164 (309)
Q Consensus 85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (309)
.+..++...+..+++|+.|++++ +.+..+...... .+++|+.|++++
T Consensus 89 ----------------------~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 ----------------------KIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFE----------HLNSLTSLNLAS 135 (192)
T ss_dssp ----------------------CCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSST----------TCTTCCEEECTT
T ss_pred ----------------------cCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhh----------cCCCCCEEEeCC
Confidence 23333323456667777777777 566666554443 677788888877
Q ss_pred cee
Q 035891 165 SKL 167 (309)
Q Consensus 165 c~l 167 (309)
|.+
T Consensus 136 N~l 138 (192)
T 1w8a_A 136 NPF 138 (192)
T ss_dssp CCB
T ss_pred CCc
Confidence 744
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=3e-07 Score=82.32 Aligned_cols=189 Identities=10% Similarity=0.082 Sum_probs=117.9
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------cccCC-cccchhhhhccCCCceEEEEE
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILFGG-SLVLVEELLGLERLNVLTITL 75 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~~-~~~~~~~l~~L~~L~~L~l~~ 75 (309)
+|+.+.+.. .++.++..++..|.+|+.+++.++.+..++... .+... .......+..+++|+.+.+..
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 466666664 466666666677777777777666655443321 01100 012223466677788877742
Q ss_pred ecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCC-----ceEEcCccCcccccCCC
Q 035891 76 QSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDL-----EEMEIDYAGEEVKRIRE 150 (309)
Q Consensus 76 ~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l-----~~l~~~~~~~~~~~~~~ 150 (309)
....+....-.. ++|+.+.+. +.+..++...+..+++|+.+.+.+. .+ ..++...+.
T Consensus 236 -~l~~I~~~aF~~------~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~-------- 297 (401)
T 4fdw_A 236 -NVSTIGQEAFRE------SGITTVKLP--NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLE-------- 297 (401)
T ss_dssp -TCCEECTTTTTT------CCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTT--------
T ss_pred -CccCcccccccc------CCccEEEeC--CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhh--------
Confidence 222222111111 268888885 3577777678889999999999873 32 356666554
Q ss_pred cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891 151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228 (309)
Q Consensus 151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 228 (309)
.+++|+.+.+... ++.++ .+..+++|+.+.+.. .++.+.. ..+..+ +|+.+.+.+. .+.
T Consensus 298 --~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~------------~aF~~~-~L~~l~l~~n-~~~ 358 (401)
T 4fdw_A 298 --GCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPA--NVTQINF------------SAFNNT-GIKEVKVEGT-TPP 358 (401)
T ss_dssp --TCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECT--TCCEECT------------TSSSSS-CCCEEEECCS-SCC
T ss_pred --CCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECc--cccEEcH------------HhCCCC-CCCEEEEcCC-CCc
Confidence 7899999999855 33343 466789999999965 3655542 456777 9999999884 555
Q ss_pred ccCCC
Q 035891 229 SIYPK 233 (309)
Q Consensus 229 ~l~~~ 233 (309)
.+...
T Consensus 359 ~l~~~ 363 (401)
T 4fdw_A 359 QVFEK 363 (401)
T ss_dssp BCCCS
T ss_pred ccccc
Confidence 55543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=1.5e-10 Score=93.51 Aligned_cols=80 Identities=23% Similarity=0.179 Sum_probs=58.4
Q ss_pred CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891 2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL 81 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 81 (309)
+++.+|++|++++| .++.+| . +.++++|++|++++|.+. .++..+..+++|+.|+++.+....+
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~-------------~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIK-------------KIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEEC-------------SCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred hcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCcc-------------cccchhhcCCcCCEEECcCCcCCcC
Confidence 45789999999999 899999 5 899999999999999885 3444555667788888877665554
Q ss_pred hhhcCCcCccccCCCcCeEEEec
Q 035891 82 HRLLTSPSLQSIFSNTPSLCLRN 104 (309)
Q Consensus 82 ~~~~~~~~l~~~l~~L~~L~l~~ 104 (309)
+.+.. +++|+.|++++
T Consensus 109 ~~~~~-------l~~L~~L~l~~ 124 (198)
T 1ds9_A 109 SGIEK-------LVNLRVLYMSN 124 (198)
T ss_dssp HHHHH-------HHHSSEEEESE
T ss_pred Ccccc-------CCCCCEEECCC
Confidence 43222 11355566555
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.75 E-value=6.5e-09 Score=100.20 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=55.4
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccC
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLI 174 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~ 174 (309)
+|+.|+++++. +..++ ..+..+++|+.|++++ +.+..++..+. .+++|+.|++++|.+..+| .++
T Consensus 225 ~L~~L~Ls~n~-l~~l~-~~~~~l~~L~~L~Ls~-N~l~~lp~~~~-----------~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 225 LWHALDLSNLQ-IFNIS-ANIFKYDFLTRLYLNG-NSLTELPAEIK-----------NLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp CCCEEECTTSC-CSCCC-GGGGGCCSCSCCBCTT-SCCSCCCGGGG-----------GGTTCCEEECTTSCCSSCCSSGG
T ss_pred CCcEEECCCCC-CCCCC-hhhcCCCCCCEEEeeC-CcCcccChhhh-----------CCCCCCEEeCcCCcCCccChhhc
Confidence 56666666643 33443 2334556666666665 34555543332 5666666666666555554 345
Q ss_pred CCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccc
Q 035891 175 LAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYAL 224 (309)
Q Consensus 175 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 224 (309)
.+++|++|+|++| .++.++ ..++.+++|++|+|+++
T Consensus 291 ~l~~L~~L~L~~N-~l~~lp-------------~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTTLP-------------WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGTTCSEEECCSS-CCCCCC-------------SSTTSCTTCCCEECTTS
T ss_pred CCCCCCEEECCCC-CCCccC-------------hhhhcCCCccEEeCCCC
Confidence 5666666666655 344443 34556666666666664
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=7.4e-08 Score=75.65 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL 85 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~ 85 (309)
..+.++++++ .++.+|.+ + .++|++|++++|.+. ...+..+..+++|+.|+++.+
T Consensus 10 ~~~~l~~s~n-~l~~ip~~-~--~~~l~~L~L~~N~i~------------~~~~~~~~~l~~L~~L~Ls~N--------- 64 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTG-I--PTTTQVLYLYDNQIT------------KLEPGVFDRLTQLTRLDLDNN--------- 64 (170)
T ss_dssp ETTEEECTTS-CCSSCCSC-C--CTTCSEEECCSSCCC------------CCCTTTTTTCTTCSEEECCSS---------
T ss_pred CCCEEEeCCC-CcCccCcc-C--CCCCcEEEcCCCcCC------------ccChhhhcCcccCCEEECCCC---------
Confidence 3578999999 89999986 4 388999999999986 333444555666666655433
Q ss_pred CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
.++.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++|
T Consensus 65 ---------------------~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~N 112 (170)
T 3g39_A 65 ---------------------QLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFD----------NLKSLTHIWLLNN 112 (170)
T ss_dssp ---------------------CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSS
T ss_pred ---------------------CcCccChhhccCCCCCCEEECCC-CccCEeCHHHhc----------CCCCCCEEEeCCC
Confidence 23334323345566677777766 456666554443 5667777777766
Q ss_pred ee
Q 035891 166 KL 167 (309)
Q Consensus 166 ~l 167 (309)
.+
T Consensus 113 ~~ 114 (170)
T 3g39_A 113 PW 114 (170)
T ss_dssp CB
T ss_pred CC
Confidence 33
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.60 E-value=8.3e-08 Score=75.69 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=67.4
Q ss_pred CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891 7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT 86 (309)
Q Consensus 7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~ 86 (309)
-+.++++++ .++.+|.+ +. ++|++|++++|.+. ...+..+..+++|+.|+++.+
T Consensus 14 ~~~l~~~~n-~l~~iP~~-~~--~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N---------- 67 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAG-IP--TDKQRLWLNNNQIT------------KLEPGVFDHLVNLQQLYFNSN---------- 67 (174)
T ss_dssp SSEEECCSS-CCSSCCSC-CC--TTCSEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSS----------
T ss_pred CcEEEeCCC-CCCccCCC-cC--CCCcEEEeCCCCcc------------ccCHHHhcCCcCCCEEECCCC----------
Confidence 367899998 89999987 44 88999999999986 333444555666666655433
Q ss_pred CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891 87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK 166 (309)
Q Consensus 87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 166 (309)
.++.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++|.
T Consensus 68 --------------------~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~----------~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 68 --------------------KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFD----------NLKSLTHIYLYNNP 116 (174)
T ss_dssp --------------------CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCSEEECCSSC
T ss_pred --------------------CCCccChhHhCCcchhhEEECCC-CccceeCHHHhc----------cccCCCEEEeCCCC
Confidence 33334323345566666666666 456665554333 56677777777664
Q ss_pred ec
Q 035891 167 LR 168 (309)
Q Consensus 167 l~ 168 (309)
+.
T Consensus 117 ~~ 118 (174)
T 2r9u_A 117 WD 118 (174)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.58 E-value=2.1e-08 Score=78.61 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=55.0
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eeccc--Cc
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHV--TW 172 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l--~~ 172 (309)
.|++|++++|. +++.....+..+++|+.|++++|..+++-........ .+..++|++|+|++| ++++- ..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~------~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL------ENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC------HHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc------ccccCCCCEEEcCCCCcCCHHHHHH
Confidence 47778888776 5555555666777777777777776666554333200 001246777777777 55542 23
Q ss_pred cCCCCCccEEEEEcCccccc
Q 035891 173 LILAPNLKHIEVYNCRYLDE 192 (309)
Q Consensus 173 l~~l~~L~~L~l~~c~~l~~ 192 (309)
+..+++|++|+|++|+.+++
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 45567777777777766654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.52 E-value=2.7e-07 Score=72.37 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=41.0
Q ss_pred ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891 154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY 231 (309)
Q Consensus 154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 231 (309)
+++|+.|++++|+++.++ .+..+++|++|+++++ .++.++. ..+..+++|++|+++++ .++.++
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~f~~l~~L~~L~L~~N-~l~~~~ 94 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA------------GVFDKLTQLTQLSLNDN-QLKSIP 94 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccCh------------hhccCCCCCCEEECCCC-ccCEeC
Confidence 345555555555444442 2445555666666554 3434432 22345556666666553 455555
Q ss_pred CCc-cCCCCccEEeecCc
Q 035891 232 PKA-LPFPHLKELEVNLC 248 (309)
Q Consensus 232 ~~~-~~~~~L~~L~i~~C 248 (309)
... ..+++|+.|++++.
T Consensus 95 ~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEEeCCC
Confidence 432 25555666665553
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.49 E-value=3.9e-07 Score=71.77 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=44.0
Q ss_pred ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891 154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY 231 (309)
Q Consensus 154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 231 (309)
+++|+.|++++|++..++ .+..+++|++|+++++ .++.++. ..+..+++|++|+++++ .++.++
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~------------~~~~~l~~L~~L~L~~N-~l~~l~ 97 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT------------GVFDKLTQLTQLDLNDN-HLKSIP 97 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccCh------------hHhCCcchhhEEECCCC-ccceeC
Confidence 355666666666555443 2445566666666554 3444432 22345666666666653 555555
Q ss_pred CC-ccCCCCccEEeecCc
Q 035891 232 PK-ALPFPHLKELEVNLC 248 (309)
Q Consensus 232 ~~-~~~~~~L~~L~i~~C 248 (309)
.. ...+++|+.|+++++
T Consensus 98 ~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTTCTTCSEEECCSS
T ss_pred HHHhccccCCCEEEeCCC
Confidence 54 235666666666654
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=1.6e-07 Score=73.60 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=46.2
Q ss_pred CCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec-ch--hhhhhcCCcCccccCCCcCeEEEecCC
Q 035891 30 KMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS-FA--ALHRLLTSPSLQSIFSNTPSLCLRNCH 106 (309)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~-~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~ 106 (309)
.+|+.||+++|.++ ...+..+..+++|+.|++..+. .+ .+..+........ +|++|++++|.
T Consensus 61 ~~L~~LDLs~~~It------------d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~---~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSCIM------------SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK---SMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCCCC------------GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH---HCCEEEEESCT
T ss_pred ceEeEEeCcCCCcc------------HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccC---CCCEEEcCCCC
Confidence 56888888888876 4555555556666666554332 11 2222222100000 35555555555
Q ss_pred CCCeecccCccccccCCEEEEecCCCCce
Q 035891 107 SLSSLSVFTLASLRHLEALDMTNCKDLEE 135 (309)
Q Consensus 107 ~l~~~~~~~l~~l~~L~~L~l~~~~~l~~ 135 (309)
.+++.....+..+++|+.|++++|..+++
T Consensus 126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 55554434444555555555555554443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.46 E-value=3.2e-09 Score=94.23 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCcEEecCCCcCCCCCchhhhc-----CCCCCceEEecccCCC
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVIS-----NLKMLEALRMFKCGSS 43 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~-----~L~~L~~L~l~~~~~~ 43 (309)
.+|++|++++| .++......+. ..++|++|++++|.+.
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 114 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence 45777777777 66543322222 2257777777777764
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=9.9e-07 Score=77.21 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=32.3
Q ss_pred CCCCCCcEEecCC-CcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891 2 KYLVNLKCLNLEY-TYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF 78 (309)
Q Consensus 2 ~~L~~Lr~L~l~~-~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~ 78 (309)
+.+.+|++|+|++ | .++.+|.+.++.|++|++|++++|.+. ...+..+..|++|+.|+++.+..
T Consensus 28 ~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 28 PGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLR------------FVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCC------------EECTTGGGSCSCCCEEECCSSCC
T ss_pred CCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccc------------eeCHHHhcCCcCCCEEeCCCCcc
Confidence 3445555555554 4 555555434555555555555555553 22233345555555555544433
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.21 E-value=3e-06 Score=74.08 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred CCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCc-
Q 035891 94 FSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 172 (309)
Q Consensus 94 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~- 172 (309)
+++|+.|++++.+.++.++...+..+++|+.|++++ +.+..++...+. .+++|+.|++++|++..+|.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFH----------FTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGG----------SCSCCCEEECCSSCCSCCCST
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhc----------CCcCCCEEeCCCCccceeCHH
Confidence 336888888765667777655677778888888887 567777765554 67888888888887666652
Q ss_pred -cCCCCCccEEEEEcCc
Q 035891 173 -LILAPNLKHIEVYNCR 188 (309)
Q Consensus 173 -l~~l~~L~~L~l~~c~ 188 (309)
+..++ |+.|++.++.
T Consensus 99 ~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNP 114 (347)
T ss_dssp TTCSCC-CCEEECCSSC
T ss_pred HcccCC-ceEEEeeCCC
Confidence 22333 7888877653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=8.6e-07 Score=78.15 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=74.4
Q ss_pred CCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--------
Q 035891 94 FSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-------- 165 (309)
Q Consensus 94 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-------- 165 (309)
+++|+.|.+.++..+ .+ ..+. +++|+.|++..|. +..-....... ..+|+|+.|+++.+
T Consensus 171 ~P~L~~L~L~g~~~l-~l--~~~~-~~~L~~L~L~~~~-l~~~~l~~l~~--------~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SI--GKKP-RPNLKSLEIISGG-LPDSVVEDILG--------SDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp CTTCCEEEEECCBTC-BC--CSCB-CTTCSEEEEECSB-CCHHHHHHHHH--------SBCTTCCEEEEECBCGGGTCCS
T ss_pred CCCCcEEEEeCCCCc-ee--cccc-CCCCcEEEEecCC-CChHHHHHHHH--------ccCCCCcEEEEeccccccccch
Confidence 457888888776332 12 2232 6788888887652 32211111100 04788888888632
Q ss_pred eecccC---ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc-----cCCCccCC
Q 035891 166 KLRHVT---WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS-----IYPKALPF 237 (309)
Q Consensus 166 ~l~~l~---~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~-----l~~~~~~~ 237 (309)
.+..+. ....+|+|++|.+.+|.......... .....+|+|++|+|+.+ .++. +......+
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l----------a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF----------LESDILPQLETMDISAG-VLTDEGARLLLDHVDKI 306 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH----------HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH----------HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccC
Confidence 122221 12357899999998875432221000 11245789999999764 5654 33333467
Q ss_pred CCccEEeecCc
Q 035891 238 PHLKELEVNLC 248 (309)
Q Consensus 238 ~~L~~L~i~~C 248 (309)
++|+.|++++|
T Consensus 307 ~~L~~L~L~~n 317 (362)
T 2ra8_A 307 KHLKFINMKYN 317 (362)
T ss_dssp TTCSEEECCSB
T ss_pred CcceEEECCCC
Confidence 88999999887
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=8.4e-05 Score=66.15 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=57.7
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCccCC
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLIL 175 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~ 175 (309)
+|+.+.+.. ....+....+..+..|+.+.+.. .+..+....+. .+..++.+......+... ....
T Consensus 231 ~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~--~~~~i~~~~F~----------~~~~l~~~~~~~~~i~~~-~F~~ 295 (394)
T 4fs7_A 231 GVKNIIIPD--SFTELGKSVFYGCTDLESISIQN--NKLRIGGSLFY----------NCSGLKKVIYGSVIVPEK-TFYG 295 (394)
T ss_dssp CCCEEEECT--TCCEECSSTTTTCSSCCEEEECC--TTCEECSCTTT----------TCTTCCEEEECSSEECTT-TTTT
T ss_pred CCceEEECC--CceecccccccccccceeEEcCC--Ccceeeccccc----------cccccceeccCceeeccc-cccc
Confidence 466666543 33444434555666777776654 34444443332 445555554443322111 2334
Q ss_pred CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEEeec
Q 035891 176 APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKELEVN 246 (309)
Q Consensus 176 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~ 246 (309)
+.+|+.+.+.+ .++.+.. ..+..+++|+.+.|.. .++.+....+ .+.+|+.+.+.
T Consensus 296 ~~~L~~i~l~~--~i~~I~~------------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 296 CSSLTEVKLLD--SVKFIGE------------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp CTTCCEEEECT--TCCEECT------------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccc--ccceech------------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 55566666543 2333321 2344555666666643 3555554444 44555555543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=1.1e-07 Score=84.26 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=9.0
Q ss_pred CCCceEEecccCCC
Q 035891 30 KMLEALRMFKCGSS 43 (309)
Q Consensus 30 ~~L~~L~l~~~~~~ 43 (309)
++|++|++++|.+.
T Consensus 72 ~~L~~L~Ls~n~l~ 85 (372)
T 3un9_A 72 SSLRQLNLAGVRMT 85 (372)
T ss_dssp TTCCEEECTTSCCC
T ss_pred hhCCEEEecCCCCC
Confidence 45666777666664
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1e-05 Score=71.22 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=94.6
Q ss_pred CCCCCcEEecCCCcCCC----------CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEE
Q 035891 3 YLVNLKCLNLEYTYRIY----------KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLT 72 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~----------~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~ 72 (309)
++++||.|.+.+. ... .++. ++..+++|+.|.+++|... .. ..+ .+++|+.|+
T Consensus 137 ~l~~L~~L~l~~~-~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l-------------~l-~~~-~~~~L~~L~ 199 (362)
T 2ra8_A 137 KFAHFEGLFWGDI-DFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL-------------SI-GKK-PRPNLKSLE 199 (362)
T ss_dssp HHTTCSEEEECCC-CTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC-------------BC-CSC-BCTTCSEEE
T ss_pred hcchhhheeecCc-chhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc-------------ee-ccc-cCCCCcEEE
Confidence 4678999988654 221 2444 4788999999999887422 11 113 388999999
Q ss_pred EEEecch--hhhhhcCCcCccccCCCcCeEEEecCCC-------CCeec-ccCccccccCCEEEEecCCCCceEEcCccC
Q 035891 73 ITLQSFA--ALHRLLTSPSLQSIFSNTPSLCLRNCHS-------LSSLS-VFTLASLRHLEALDMTNCKDLEEMEIDYAG 142 (309)
Q Consensus 73 l~~~~~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~-------l~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 142 (309)
+..+... .+..+... . +++|+.|+++.+.+ +..+. ......+++|+.|++.+|. +.........
T Consensus 200 L~~~~l~~~~l~~l~~~-~----lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la 273 (362)
T 2ra8_A 200 IISGGLPDSVVEDILGS-D----LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFL 273 (362)
T ss_dssp EECSBCCHHHHHHHHHS-B----CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHH
T ss_pred EecCCCChHHHHHHHHc-c----CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHH
Confidence 9755433 22233211 1 44799999964211 11111 0111357899999999864 3221111100
Q ss_pred cccccCCCcccccCcceEEEeCceecc-----cC-ccCCCCCccEEEEEcCc
Q 035891 143 EEVKRIRETHGFFSLHKVSIWGSKLRH-----VT-WLILAPNLKHIEVYNCR 188 (309)
Q Consensus 143 ~~~~~~~~~~~~~~L~~L~l~~c~l~~-----l~-~l~~l~~L~~L~l~~c~ 188 (309)
... .+++|++|+++.|.+.+ ++ .+..+++|+.|++++|.
T Consensus 274 ------~a~-~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 274 ------ESD-ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp ------HCS-SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred ------hCc-cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 001 57899999999885554 22 23567999999998874
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.58 E-value=0.0014 Score=58.10 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCCCCCcEEecCCC--cCCCCCchhhhcCCCCCceEEec
Q 035891 1 LKYLVNLKCLNLEYT--YRIYKIPGQVISNLKMLEALRMF 38 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~--~~l~~lp~~~i~~L~~L~~L~l~ 38 (309)
|.++.+|+.+.+..+ ..++.|+..++..+.+|+.+.+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~ 122 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL 122 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence 456788888888654 23667777777777777776654
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.002 Score=57.15 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG 41 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 41 (309)
.|+.+.+.. .++.|...++.++.+|+.+.+..+.
T Consensus 65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~ 98 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNK 98 (394)
T ss_dssp CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGC
T ss_pred cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCC
Confidence 488899986 4889988889999999999987653
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.48 E-value=0.0025 Score=56.55 Aligned_cols=204 Identities=15% Similarity=0.134 Sum_probs=110.0
Q ss_pred CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCCcccchhhhhccCCCce
Q 035891 1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGGSLVLVEELLGLERLNV 70 (309)
Q Consensus 1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~~~~~~~~l~~L~~L~~ 70 (309)
|.++.+|+.+.+..+ +..++.+++..+.+|+.+.+..+ +..++... .+...............+|+.
T Consensus 158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 456788999999864 67788888889999999988654 22111110 000000111111222345555
Q ss_pred EEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCC
Q 035891 71 LTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRE 150 (309)
Q Consensus 71 L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (309)
+.+. .....+... .+. .++.++.+.+.. ....+....+..+..++.+..... .++...+.
T Consensus 235 i~ip-~~~~~i~~~----~f~-~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~-------- 294 (394)
T 4fs7_A 235 IIIP-DSFTELGKS----VFY-GCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFY-------- 294 (394)
T ss_dssp EEEC-TTCCEECSS----TTT-TCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSS----EECTTTTT--------
T ss_pred EEEC-CCceecccc----ccc-ccccceeEEcCC--CcceeeccccccccccceeccCce----eecccccc--------
Confidence 5442 111111110 011 134677777764 234454445666666776655431 23333332
Q ss_pred cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891 151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228 (309)
Q Consensus 151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 228 (309)
.+.+|+.+.+... ++.++ .+..+++|+.+++.+ .++.+.. ..+..+.+|+.+.+.. .++
T Consensus 295 --~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~------------~aF~~c~~L~~i~lp~--~l~ 355 (394)
T 4fs7_A 295 --GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGK------------RSFRGCTSLSNINFPL--SLR 355 (394)
T ss_dssp --TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECT------------TTTTTCTTCCEECCCT--TCC
T ss_pred --ccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhH------------HhccCCCCCCEEEECc--ccc
Confidence 5677777777655 22222 345667788777743 3444432 3566677788777764 366
Q ss_pred ccCCCcc-CCCCccEEeec
Q 035891 229 SIYPKAL-PFPHLKELEVN 246 (309)
Q Consensus 229 ~l~~~~~-~~~~L~~L~i~ 246 (309)
.+....+ .|++|+.+++.
T Consensus 356 ~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECTTTBTTCTTCCEEEEE
T ss_pred EehHHHhhCCCCCCEEEEC
Confidence 6766555 66777777664
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.37 E-value=0.02 Score=50.14 Aligned_cols=33 Identities=6% Similarity=0.012 Sum_probs=23.6
Q ss_pred CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecc
Q 035891 5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFK 39 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 39 (309)
.+|+.+.+.. .++.|+..++.++.+|+.+.+..
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT
T ss_pred cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC
Confidence 4566666665 47777777778888888888754
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.26 E-value=6.7e-05 Score=59.44 Aligned_cols=122 Identities=15% Similarity=0.017 Sum_probs=58.1
Q ss_pred hcCCCCCceEEeccc-CCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh--hhhhcCCcCccccCCCcCeEEE
Q 035891 26 ISNLKMLEALRMFKC-GSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA--LHRLLTSPSLQSIFSNTPSLCL 102 (309)
Q Consensus 26 i~~L~~L~~L~l~~~-~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--l~~~~~~~~l~~~l~~L~~L~l 102 (309)
+...++|++|++++| .+.. .+...+...+...++|+.|+++.+.... ...+... +.. .++|++|++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~--------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~--L~~-n~~L~~L~L 100 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV--------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM--LKV-NNTLKSLNV 100 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH--------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH--HHH-CSSCCEEEC
T ss_pred HhcCCCCCEEEecCCCCCCH--------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH--HHh-CCCcCEEEC
Confidence 556667777777766 5541 0011233445556667777766554432 1111110 000 125777777
Q ss_pred ecCCCCCeecc----cCccccccCCEEEE--ecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891 103 RNCHSLSSLSV----FTLASLRHLEALDM--TNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK 166 (309)
Q Consensus 103 ~~~~~l~~~~~----~~l~~l~~L~~L~l--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 166 (309)
+++. +..... ..+...++|+.|++ .+ +.+..-+...... .+ ...++|++|++++|.
T Consensus 101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~---~L---~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 101 ESNF-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIAN---ML---EKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHH---HH---HHCSSCCEEECCCSS
T ss_pred cCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHH---HH---HhCCCcCEEeccCCC
Confidence 7643 333211 23455567777777 44 4444332211110 00 034677777777773
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.05 E-value=5.6e-05 Score=63.43 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=46.4
Q ss_pred cCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCC
Q 035891 27 SNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCH 106 (309)
Q Consensus 27 ~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~ 106 (309)
.++++|++|++++|.+..+ ..++..++.+++|+.|+++.+....+.++..... + +|+.|++.++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l----------~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~----l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL----------DDMSSIVQKAPNLKILNLSGNELKSERELDKIKG----L-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC----------GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT----S-CCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCC----------ccchhHHhhCCCCCEEECCCCccCCchhhhhccc----C-CcceEEccCCc
Confidence 4567777777777777522 2333445567777777776655554444333221 1 47777777654
Q ss_pred CCCeecc------cCccccccCCEEE
Q 035891 107 SLSSLSV------FTLASLRHLEALD 126 (309)
Q Consensus 107 ~l~~~~~------~~l~~l~~L~~L~ 126 (309)
-...++. ..+..+++|+.|+
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 3332221 1244566666554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.01 E-value=0.0096 Score=52.28 Aligned_cols=120 Identities=13% Similarity=0.228 Sum_probs=62.5
Q ss_pred CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC--cc
Q 035891 96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--WL 173 (309)
Q Consensus 96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l 173 (309)
+++.+.+.. .+..+....+..+.+|+.+.+.. +++.++...+. .+.+|+.+.+... ++.++ .+
T Consensus 218 ~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~----------~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 218 NLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQ----------NCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp SCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTT----------TCTTCCEEEECCC-CSEECTTTT
T ss_pred ccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCccccc----------eeehhcccccccc-ceecccccc
Confidence 344444432 34444434455566677666653 36666554443 5666777766544 22222 34
Q ss_pred CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEEee
Q 035891 174 ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKELEV 245 (309)
Q Consensus 174 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i 245 (309)
..+++|+.+.+.++ .++.+.. ..+..+++|+.+.|.. .++.+....+ .+.+|+++.+
T Consensus 283 ~~c~~L~~i~l~~~-~i~~I~~------------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 283 SGCSNLTKVVMDNS-AIETLEP------------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCTTCCEEEECCT-TCCEECT------------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccc-ccceehh------------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 55677777777542 3444422 3455667777777653 3555554443 3444444433
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.82 E-value=0.00085 Score=56.18 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=48.6
Q ss_pred CCCCCcEEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891 3 YLVNLKCLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA 79 (309)
Q Consensus 3 ~L~~Lr~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 79 (309)
++.+|+.|+|++| .+..++. +.+..+++|++|++++|.+..+ ..+..+..+ +|+.|++.++...
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-----------~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-----------RELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-----------GGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-----------hhhhhcccC-CcceEEccCCcCc
Confidence 4789999999999 8887653 2367999999999999999621 123344444 9999999876654
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.32 E-value=0.00068 Score=53.52 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=75.3
Q ss_pred CCCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe
Q 035891 2 KYLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ 76 (309)
Q Consensus 2 ~~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~ 76 (309)
....+|++|++++|..+.. +... +...++|++|++++|.+.. .+...+...+...++|++|+++.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~--------~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSND--------PVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCH--------HHHHHHHHHHHHCSSCCEEECCSS
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCCh--------HHHHHHHHHHHhCCCcCEEECcCC
Confidence 4567899999998734543 4443 6778999999999999861 011224455677789999999877
Q ss_pred cchh--hhhhcCCcCccccCCCcCeEEE--ecCCCCCeeccc----CccccccCCEEEEecC
Q 035891 77 SFAA--LHRLLTSPSLQSIFSNTPSLCL--RNCHSLSSLSVF----TLASLRHLEALDMTNC 130 (309)
Q Consensus 77 ~~~~--l~~~~~~~~l~~~l~~L~~L~l--~~~~~l~~~~~~----~l~~l~~L~~L~l~~~ 130 (309)
.... ...+... +.. .+.|+.|++ .+ +.+...... .+...++|+.|+++++
T Consensus 104 ~i~~~g~~~l~~~--L~~-n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGSGILALVEA--LQS-NTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHHHHHHHG--GGG-CSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCCHHHHHHHHHH--HHh-CCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 6653 2222211 111 236999999 54 444443211 3455578999999874
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.56 E-value=0.011 Score=43.54 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=30.7
Q ss_pred EEecCCCcCCC--CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891 9 CLNLEYTYRIY--KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS 77 (309)
Q Consensus 9 ~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~ 77 (309)
.++-++. .++ .+|.+ + -.+|++|++++|.+..+ -.+.+..+++|+.|++.++.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l------------~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTA-F--PVDTTELVLTGNNLTAL------------PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSC-C--CTTCSEEECTTSCCSSC------------CTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCC-C--CcCCCEEECCCCcCCcc------------ChhhhhhccccCEEEecCCC
Confidence 4555665 565 66654 2 23577777777777522 22335566677777776553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.51 E-value=0.18 Score=36.97 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=33.9
Q ss_pred CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCC
Q 035891 6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSS 43 (309)
Q Consensus 6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 43 (309)
+|++|+|++| .++.+|.+++..+++|++|++.+|...
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 6999999999 999999998899999999999988763
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.82 E-value=0.58 Score=36.90 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891 5 VNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA 79 (309)
Q Consensus 5 ~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 79 (309)
..|+.|+|+++..+.. +-.. +..=+.|+.|++++|.+.+ .+...+.+.+..-+.|+.|++..+...
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd--------~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISD--------SEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBH--------HHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCCh--------HHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4566666665323332 2222 4444566677776666641 011223333444566666666554443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=67.68 E-value=3 Score=32.80 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=41.4
Q ss_pred CCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEE
Q 035891 4 LVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTIT 74 (309)
Q Consensus 4 L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~ 74 (309)
=.+|+.|+|++| .+.. |.. ++..=+.|++|+++.|.+.. .+...+.+.+..-+.|+.|++.
T Consensus 69 N~~L~~L~L~~n-~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~--------~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 69 SKHIEKFSLANT-AISDSEARGLIE-LIETSPSLRVLNVESNFLTP--------ELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp CSCCCEEECTTS-CCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCH--------HHHHHHHHHTTTTCCCSEEECC
T ss_pred CCCcCEEEccCC-CCChHHHHHHHH-HHhcCCccCeEecCCCcCCH--------HHHHHHHHHHhhCCceeEEECC
Confidence 367999999999 8774 343 35566889999999999961 1112234445555667777765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.18 E-value=11 Score=25.87 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=31.6
Q ss_pred CCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891 107 SLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS 165 (309)
Q Consensus 107 ~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 165 (309)
.++.+....+.++.+|+.+.|.. .++.++...+. .+.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~----------~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFS----------GCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSST----------TCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHh----------ccCCccEEEEcCC
Confidence 34455545677777888888874 57777766554 6777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.68 E-value=15 Score=25.10 Aligned_cols=23 Identities=0% Similarity=0.120 Sum_probs=13.8
Q ss_pred CCCCCchhhhcCCCCCceEEecc
Q 035891 17 RIYKIPGQVISNLKMLEALRMFK 39 (309)
Q Consensus 17 ~l~~lp~~~i~~L~~L~~L~l~~ 39 (309)
.++.|...+|..+.+|+.+.+-.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT
T ss_pred ccCEecHHHhcCCCCCcEEEcCC
Confidence 45556555566666666666643
Done!