BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035892
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 64/67 (95%)
Query: 17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
GQE+++YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNF+T+DFAELYNLG PVAAVY
Sbjct: 104 GQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVY 163
Query: 77 FNCQRES 83
FN QRE+
Sbjct: 164 FNSQREA 170
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 118 bits (295), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
G EIV+YE+P PT GIHR VF+LFRQLGRQTVYAPGWRQNF+TR+FAE+YNLG PVAAV+
Sbjct: 105 GNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVF 164
Query: 77 FNCQRES 83
+N QRES
Sbjct: 165 YNSQRES 171
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 3/74 (4%)
Query: 17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYA--PGWRQNFSTRDFAELYNLGPPVAA 74
G+E+V+YE PRP++GIHRFVFVLFRQ R+ ++ P R +F+TR FA Y+LG PVAA
Sbjct: 108 GKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAA 166
Query: 75 VYFNCQRESGSGGR 88
V+FN QRE+ + R
Sbjct: 167 VFFNAQRETAARKR 180
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Query: 17 GQEIVNYESPRPTMGIHRFVFVLFRQLGR-QTVYAPG--WRQNFSTRDFAELYNLGPPVA 73
G+E+V+YE PRP +GIHRFVF+LF+Q R Q + +P R F+TR F + LG PVA
Sbjct: 107 GKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVA 166
Query: 74 AVYFNCQRESGSGGR 88
AV+FNCQRE+ + R
Sbjct: 167 AVFFNCQRETAARRR 181
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 16 AGQEIVNY--ESPRPTMGIHRFVFVLFRQLGR-------QTVYAPGWRQNFSTRDFAELY 66
G + +Y P G+HR++F+L+RQ + G R NF+ RDFA +
Sbjct: 93 GGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTG-RLNFNARDFAAKH 151
Query: 67 NLGPPVAAVYFNCQRES 83
LG P+AA Y+ Q +
Sbjct: 152 GLGEPIAANYYQAQYDD 168
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 13 HMHAGQEIVNY--ESPRPTMGIHRFVFVLFRQLGRQTVYAP-------GWRQNFSTRDFA 63
++ +G + +Y P G+HR+V++++ Q G P R F F
Sbjct: 95 NISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFR 154
Query: 64 ELYNLGPPVAAVYFNCQ 80
+ Y LG PVA + +
Sbjct: 155 KKYELGAPVAGTCYQAE 171
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 13 HMHAGQEIVNY--ESPRPTMGIHRFVFVLFRQLGRQTVYAP-------GWRQNFSTRDFA 63
++ +G + +Y P G+HR+V++++ Q G P R F F
Sbjct: 95 NISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFR 154
Query: 64 ELYNLGPPVAAVYFNCQ 80
+ Y LG PVA + +
Sbjct: 155 KKYELGAPVAGTCYQAE 171
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 19 EIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAP-------GWRQNFSTRDFAELYNLGPP 71
E V P+ T G+HR+V++++ Q P R F +F + Y+LG P
Sbjct: 105 EYVGSGPPKDT-GLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAP 163
Query: 72 VAAVYFNCQRES 83
VA F + +
Sbjct: 164 VAGTCFQAEWDD 175
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 14 MHAGQEIVNY--ESPRPTMGIHRFVFVLFRQLGRQTVYAP-------GWRQNFSTRDFAE 64
+ +G + +Y P G+HR+V+++++Q P R F T F +
Sbjct: 93 ISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRK 152
Query: 65 LYNLGPPVAAVYFNCQRES 83
Y+LG PVA + + +S
Sbjct: 153 KYHLGAPVAGTCYQAEWDS 171
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 19 EIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAP-------GWRQNFSTRDFAELYNLGPP 71
E V P+ T G+HR+V++++ Q P R F F + Y+LG P
Sbjct: 108 EYVGSGPPKDT-GLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKYHLGAP 166
Query: 72 VAAVYFNCQRES 83
VA F + +
Sbjct: 167 VAGTCFQAEWDD 178
>pdb|3E9C|A Chain A, Structure Of A Tryptic Core Fragment Of Tigar From Danio
Rerio
pdb|3E9C|B Chain B, Structure Of A Tryptic Core Fragment Of Tigar From Danio
Rerio
pdb|3E9D|A Chain A, Structure Of Full-Length Tigar From Danio Rerio
pdb|3E9D|B Chain B, Structure Of Full-Length Tigar From Danio Rerio
Length = 265
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 16 AGQEIVNYESPRPTMGIHRFVFVLFRQ 42
AG ++ SP P GI RF+F + R+
Sbjct: 204 AGLKMNQVFSPCPNTGISRFIFTIHRE 230
>pdb|3E9E|A Chain A, Structure Of Full-Length H11a Mutant Form Of Tigar From
Danio Rerio
pdb|3E9E|B Chain B, Structure Of Full-Length H11a Mutant Form Of Tigar From
Danio Rerio
Length = 265
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 16 AGQEIVNYESPRPTMGIHRFVFVLFRQ 42
AG ++ SP P GI RF+F + R+
Sbjct: 204 AGLKMNQVFSPCPNTGISRFIFTIHRE 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.142 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,273,395
Number of Sequences: 62578
Number of extensions: 124245
Number of successful extensions: 345
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 13
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)