BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035893
         (755 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 36.6 bits (83), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 18/117 (15%)

Query: 498 LPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE--G 555
           LPA++ +L+      +LKSL++   S L  +   + +   LE + +  C  L ++P   G
Sbjct: 198 LPASIANLQ------NLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 556 GLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGG-----ALPSLEEEDGLPTN 607
           G   A L+ L + DC  L  LP  +H L+ L+ L + G      LPSL  +  LP N
Sbjct: 251 GR--APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ--LPAN 303


>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
 pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
          Length = 606

 Score = 33.1 bits (74), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 30/196 (15%)

Query: 519 VNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPK 578
           +++ SK ++ + +   N SL      N  ++     G    A  ++L     + L  + K
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNL----NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 579 GLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFL---KIEG-NMEIWKSMIERGRGFHRFS 634
           GL N ST+Q L +G     +++ED  P     L    +E  N++           FH FS
Sbjct: 221 GLKN-STIQSLWLG-TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 635 SLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQ 694
            L+EL       D+ +  L +        LP+ L  L+     +L++L  S    +NL Q
Sbjct: 279 GLQEL-------DLTATHLSE--------LPSGLVGLS-----TLKKLVLSANKFENLCQ 318

Query: 695 LDLGDCPKLKYFPEKG 710
           +   + P L +   KG
Sbjct: 319 ISASNFPSLTHLSIKG 334


>pdb|1VHB|A Chain A, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
 pdb|1VHB|B Chain B, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
 pdb|2VHB|A Chain A, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
           Stercoraria
 pdb|2VHB|B Chain B, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
           Stercoraria
 pdb|3VHB|A Chain A, Imidazole Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp.
 pdb|3VHB|B Chain B, Imidazole Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp.
 pdb|4VHB|A Chain A, Thiocyanate Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp.
 pdb|4VHB|B Chain B, Thiocyanate Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp
          Length = 146

 Score = 29.3 bits (64), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 200 GSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIEECEELSISITSLPALCKMEI 259
           G  + +E+ PK   + +L  ++     P  LPA++ + ++ C+   ++    P + +  +
Sbjct: 46  GRQESLEQ-PKALAMTVLAAAQNIENLPAILPAVKKIAVKHCQA-GVAAAHYPIVGQELL 103

Query: 260 GGCKKVVWRSATDHL 274
           G  K+V+  +ATD +
Sbjct: 104 GAIKEVLGDAATDDI 118


>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R2.1 In Complex With Hen Egg Lysozyme
          Length = 251

 Score = 29.3 bits (64), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 17/101 (16%)

Query: 514 LKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLP-CAKLRTLKI----Y 568
           LK LR+N      + A   D  T+L+T+S+S  + L S P G      KL+T+ +    +
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191

Query: 569 DCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLH 609
           DC R + L           YL+      S + +DG   NLH
Sbjct: 192 DCSRCETL-----------YLSQWIRENSNKVKDGTGQNLH 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,168,103
Number of Sequences: 62578
Number of extensions: 914448
Number of successful extensions: 2093
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2083
Number of HSP's gapped (non-prelim): 17
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)