Query 035893
Match_columns 755
No_of_seqs 324 out of 3565
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-34 2.2E-39 347.6 28.9 524 103-726 70-607 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.2E-34 9.1E-39 342.4 27.3 505 126-726 68-584 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.6E-25 9.9E-30 223.5 4.7 340 345-720 78-446 (873)
4 PLN03210 Resistant to P. syrin 99.9 5E-22 1.1E-26 238.0 21.0 309 345-706 589-909 (1153)
5 KOG4194 Membrane glycoprotein 99.9 5.8E-24 1.3E-28 215.6 3.1 343 308-699 98-448 (873)
6 PLN03210 Resistant to P. syrin 99.9 1.7E-21 3.6E-26 233.5 23.5 336 343-729 556-909 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.3E-28 215.0 -4.5 340 311-728 31-377 (1255)
8 KOG0618 Serine/threonine phosp 99.8 5.8E-24 1.3E-28 227.2 -8.4 436 101-644 44-486 (1081)
9 KOG0472 Leucine-rich repeat pr 99.8 2E-24 4.4E-29 209.5 -14.1 470 96-708 62-544 (565)
10 KOG0618 Serine/threonine phosp 99.8 4E-23 8.7E-28 220.8 -5.8 194 512-725 287-488 (1081)
11 KOG0472 Leucine-rich repeat pr 99.8 4E-24 8.8E-29 207.5 -14.9 333 345-724 183-539 (565)
12 KOG0444 Cytoskeletal regulator 99.8 5.9E-22 1.3E-26 202.4 -6.7 298 345-708 78-380 (1255)
13 PRK15387 E3 ubiquitin-protein 99.6 5.3E-15 1.2E-19 164.5 16.5 256 345-702 201-457 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 2.1E-14 4.6E-19 159.8 15.5 255 369-725 201-457 (788)
15 PRK15370 E3 ubiquitin-protein 99.4 8.5E-13 1.8E-17 148.2 11.4 94 345-450 178-271 (754)
16 PRK15370 E3 ubiquitin-protein 99.4 8.6E-13 1.9E-17 148.1 11.4 244 369-701 178-426 (754)
17 KOG0617 Ras suppressor protein 99.2 1E-13 2.3E-18 119.7 -6.9 175 512-725 33-211 (264)
18 KOG4341 F-box protein containi 99.2 1.3E-12 2.9E-17 129.0 -2.6 144 304-454 182-333 (483)
19 KOG4237 Extracellular matrix p 99.2 7.7E-13 1.7E-17 129.6 -4.3 264 316-594 71-356 (498)
20 cd00116 LRR_RI Leucine-rich re 99.2 4.9E-12 1.1E-16 132.0 0.8 60 512-571 137-204 (319)
21 cd00116 LRR_RI Leucine-rich re 99.2 4.1E-12 8.8E-17 132.7 -0.2 184 512-700 81-288 (319)
22 KOG4237 Extracellular matrix p 99.1 2.1E-12 4.7E-17 126.5 -4.2 66 370-438 68-135 (498)
23 KOG0617 Ras suppressor protein 99.1 1.5E-12 3.3E-17 112.6 -4.8 125 512-643 56-182 (264)
24 KOG4341 F-box protein containi 99.1 1.8E-12 3.9E-17 128.1 -6.2 282 128-435 139-443 (483)
25 KOG4658 Apoptotic ATPase [Sign 98.8 3.4E-09 7.3E-14 121.5 4.5 103 345-450 545-651 (889)
26 KOG3207 Beta-tubulin folding c 98.7 4.2E-09 9.2E-14 105.3 1.7 127 513-643 198-335 (505)
27 KOG3207 Beta-tubulin folding c 98.6 1.4E-08 3.1E-13 101.6 1.4 183 512-701 146-337 (505)
28 KOG4658 Apoptotic ATPase [Sign 98.5 4E-08 8.7E-13 112.8 2.1 198 532-732 567-789 (889)
29 PF14580 LRR_9: Leucine-rich r 98.5 8.6E-08 1.9E-12 87.7 3.6 109 101-223 18-126 (175)
30 PRK15386 type III secretion pr 98.5 9.2E-07 2E-11 90.9 11.1 162 535-728 51-215 (426)
31 KOG1259 Nischarin, modulator o 98.5 3.3E-08 7.2E-13 93.9 0.3 192 512-724 214-410 (490)
32 KOG0532 Leucine-rich repeat (L 98.4 6.6E-09 1.4E-13 107.2 -5.5 187 516-723 79-270 (722)
33 PRK15386 type III secretion pr 98.4 6.4E-07 1.4E-11 92.0 8.9 154 417-616 51-210 (426)
34 PF14580 LRR_9: Leucine-rich r 98.4 1.8E-07 4E-12 85.5 4.4 127 582-724 17-151 (175)
35 KOG1909 Ran GTPase-activating 98.4 1.5E-08 3.2E-13 98.7 -3.1 244 343-645 28-309 (382)
36 KOG1909 Ran GTPase-activating 98.3 8.2E-08 1.8E-12 93.7 -0.6 186 532-724 88-309 (382)
37 KOG1259 Nischarin, modulator o 98.3 1.8E-07 3.8E-12 89.0 0.7 229 439-708 180-416 (490)
38 KOG2120 SCF ubiquitin ligase, 98.3 7.8E-09 1.7E-13 98.1 -8.5 180 512-723 185-373 (419)
39 COG4886 Leucine-rich repeat (L 98.3 7.3E-07 1.6E-11 95.9 5.2 178 512-708 116-295 (394)
40 KOG2120 SCF ubiquitin ligase, 98.2 3.6E-08 7.7E-13 93.7 -5.1 158 512-700 210-373 (419)
41 COG4886 Leucine-rich repeat (L 98.2 7.4E-07 1.6E-11 95.8 3.8 146 513-676 141-287 (394)
42 PF13855 LRR_8: Leucine rich r 98.0 4.8E-06 1.1E-10 62.2 3.5 56 667-724 2-60 (61)
43 PF13855 LRR_8: Leucine rich r 97.9 1.5E-05 3.2E-10 59.5 3.9 57 537-594 2-59 (61)
44 KOG1859 Leucine-rich repeat pr 97.7 5E-07 1.1E-11 96.2 -8.0 110 600-727 181-293 (1096)
45 PLN03150 hypothetical protein; 97.7 4.3E-05 9.4E-10 86.2 6.2 82 513-594 419-500 (623)
46 KOG0532 Leucine-rich repeat (L 97.6 2.3E-06 4.9E-11 89.0 -5.8 171 535-725 74-246 (722)
47 KOG1947 Leucine rich repeat pr 97.5 2.3E-05 4.9E-10 87.0 0.7 111 344-454 187-308 (482)
48 PLN03150 hypothetical protein; 97.5 0.00024 5.3E-09 80.3 7.8 105 346-452 419-526 (623)
49 KOG2982 Uncharacterized conser 97.4 4.2E-05 9.1E-10 73.3 1.1 87 340-427 66-155 (418)
50 KOG0531 Protein phosphatase 1, 97.4 3.6E-05 7.8E-10 82.9 0.1 104 512-620 95-200 (414)
51 KOG1859 Leucine-rich repeat pr 97.4 5.7E-06 1.2E-10 88.4 -6.0 105 512-621 187-294 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.4 0.0002 4.3E-09 48.8 3.3 41 666-708 1-41 (44)
53 KOG0531 Protein phosphatase 1, 97.3 5E-05 1.1E-09 81.8 -0.6 123 513-644 73-196 (414)
54 KOG1947 Leucine rich repeat pr 97.1 0.0001 2.2E-09 81.8 -0.8 118 309-433 185-310 (482)
55 KOG2982 Uncharacterized conser 97.1 0.00087 1.9E-08 64.6 5.2 192 507-708 66-267 (418)
56 KOG3665 ZYG-1-like serine/thre 96.9 0.00056 1.2E-08 77.2 3.3 112 507-621 143-265 (699)
57 KOG1644 U2-associated snRNP A' 96.9 0.002 4.3E-08 58.8 5.6 125 602-742 38-175 (233)
58 KOG3665 ZYG-1-like serine/thre 96.8 0.00074 1.6E-08 76.2 3.1 82 343-427 146-229 (699)
59 PF12799 LRR_4: Leucine Rich r 96.8 0.0019 4.2E-08 43.9 3.8 38 513-552 2-39 (44)
60 KOG1644 U2-associated snRNP A' 96.4 0.0044 9.6E-08 56.6 4.5 105 512-643 42-149 (233)
61 KOG4579 Leucine-rich repeat (L 95.9 0.00074 1.6E-08 57.4 -2.6 64 629-701 48-111 (177)
62 COG5238 RNA1 Ran GTPase-activa 95.5 0.0048 1E-07 58.9 0.7 40 532-571 88-131 (388)
63 KOG2739 Leucine-rich acidic nu 95.0 0.0081 1.8E-07 57.4 0.6 84 559-643 64-152 (260)
64 KOG4579 Leucine-rich repeat (L 94.9 0.0014 3.1E-08 55.7 -4.2 111 606-731 53-163 (177)
65 PF13306 LRR_5: Leucine rich r 94.5 0.28 6.1E-06 42.8 9.3 12 630-641 77-88 (129)
66 KOG2123 Uncharacterized conser 94.5 0.0027 5.8E-08 60.7 -3.9 63 367-431 39-101 (388)
67 COG5238 RNA1 Ran GTPase-activa 94.1 0.029 6.2E-07 53.8 1.9 188 531-724 25-253 (388)
68 PF13306 LRR_5: Leucine rich r 93.9 0.29 6.4E-06 42.7 8.2 58 580-643 54-112 (129)
69 KOG2739 Leucine-rich acidic nu 93.9 0.034 7.3E-07 53.3 2.1 86 365-452 39-127 (260)
70 KOG2123 Uncharacterized conser 92.8 0.0048 1E-07 59.1 -5.4 98 606-720 19-124 (388)
71 PF13504 LRR_7: Leucine rich r 92.1 0.11 2.4E-06 27.1 1.6 17 690-707 1-17 (17)
72 KOG3864 Uncharacterized conser 91.8 0.039 8.4E-07 50.7 -0.7 79 561-643 102-185 (221)
73 KOG3864 Uncharacterized conser 91.6 0.025 5.4E-07 51.9 -2.0 81 347-428 103-186 (221)
74 PF00560 LRR_1: Leucine Rich R 88.4 0.25 5.5E-06 27.7 1.0 9 692-700 2-10 (22)
75 smart00370 LRR Leucine-rich re 84.1 0.72 1.6E-05 27.0 1.5 21 689-710 1-21 (26)
76 smart00369 LRR_TYP Leucine-ric 84.1 0.72 1.6E-05 27.0 1.5 21 689-710 1-21 (26)
77 smart00367 LRR_CC Leucine-rich 81.4 1 2.2E-05 26.5 1.4 15 690-704 2-16 (26)
78 KOG4308 LRR-containing protein 65.7 0.069 1.5E-06 57.8 -11.1 183 514-701 89-301 (478)
79 smart00364 LRR_BAC Leucine-ric 62.4 5.4 0.00012 23.4 1.3 18 690-708 2-19 (26)
80 PF13516 LRR_6: Leucine Rich r 51.8 8.6 0.00019 21.8 1.1 17 606-622 2-18 (24)
81 smart00365 LRR_SD22 Leucine-ri 42.7 22 0.00047 21.0 1.8 16 690-706 2-17 (26)
82 KOG4308 LRR-containing protein 39.6 0.8 1.7E-05 49.8 -8.2 184 537-726 88-303 (478)
83 PF05725 FNIP: FNIP Repeat; I 39.3 42 0.00092 22.6 3.1 32 690-722 12-43 (44)
84 KOG3763 mRNA export factor TAP 33.1 19 0.00042 38.9 1.0 79 512-590 218-307 (585)
85 KOG3763 mRNA export factor TAP 28.4 42 0.00091 36.5 2.5 9 416-424 299-307 (585)
86 smart00368 LRR_RI Leucine rich 23.8 52 0.0011 19.6 1.3 16 606-621 2-17 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-34 Score=347.63 Aligned_cols=524 Identities=15% Similarity=0.140 Sum_probs=288.6
Q ss_pred CcceEEEeeeCCCc-CCCCcCCCCCCCccEEEEecCCCCCcCC-C-CCCCCCcceEeecccccceeeCccccCCCCCCCC
Q 035893 103 NLEQFGICGYGGTK-FPTWLGDSSFLNLVTLKFEDCGMCTALP-S-VGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPF 179 (755)
Q Consensus 103 ~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~lp-~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 179 (755)
+++.|+++++.+.. +|..+. .+++|+.|++++|.....+| . +..+++|++|+++++.-...++. ..+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~l 139 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--------GSI 139 (968)
T ss_pred cEEEEEecCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--------ccc
Confidence 45555555544322 233332 35566666666554433455 2 23555666666655432222221 115
Q ss_pred CcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCC---CCCCccEEEeccCcccc---ccCCCCCc
Q 035893 180 PCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEECEELS---ISITSLPA 253 (755)
Q Consensus 180 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~---~~~~~l~~ 253 (755)
++|++|+++++.-. ...+..++.+++|++|++++|. +.+.+|. .+++|++|++++|.... ..+..+++
T Consensus 140 ~~L~~L~Ls~n~~~-----~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 140 PNLETLDLSNNMLS-----GEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred CCCCEEECcCCccc-----ccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 55666665555311 1112224455566666666653 4444443 23455555555544221 12233445
Q ss_pred cceEEEcCCCCce-eecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchhhhhh
Q 035893 254 LCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSLVAEE 332 (755)
Q Consensus 254 L~~L~l~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~ 332 (755)
|+.|++.++.... .......+++|+.|+++++.. .|.+|. .+.++++|+.|+++++.-...++..
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~---------~l~~l~~L~~L~L~~n~l~~~~p~~- 279 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL----TGPIPS---------SLGNLKNLQYLFLYQNKLSGPIPPS- 279 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCcee----ccccCh---------hHhCCCCCCEEECcCCeeeccCchh-
Confidence 5555554443211 111122334444444443321 111111 1133344555555444221111110
Q ss_pred HHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCcccchh
Q 035893 333 EKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSLPEA 411 (755)
Q Consensus 333 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~ 411 (755)
+ ..+++|++|++++|...+.+|..+..+++|+.|++++|.....+|. +..+++|+.|++++|.....+|..
T Consensus 280 ----l----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 280 ----I----FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred ----H----hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 0 1124555555555554445555555555555555555544333332 233555555555555544444443
Q ss_pred hhccCCCCccEEEeccCCcccccccc-cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCcc
Q 035893 412 WMCHTNSSLEILIILYCNSLTYIAEV-QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLT 490 (755)
Q Consensus 412 ~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~ 490 (755)
+ ..+++|+.|++++|.-...++.. ...++|+.|+++++.
T Consensus 352 l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~-------------------------------------- 391 (968)
T PLN00113 352 L--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS-------------------------------------- 391 (968)
T ss_pred H--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE--------------------------------------
Confidence 3 44555555555553211122211 111233333333322
Q ss_pred ccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccC
Q 035893 491 CIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDC 570 (755)
Q Consensus 491 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 570 (755)
+.+.++.. ++.+ ++|+.|++++|...+.+|..+..+++|+.|++++|...+.++..+..+++|+.|++++|
T Consensus 392 -------l~~~~p~~-~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 392 -------LEGEIPKS-LGAC-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred -------ecccCCHH-HhCC-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 21112111 2333 57888888888877777888888888888888888766666766677888888888888
Q ss_pred cCcccccccCCCCCCcceeEeCCc-CCC-CccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCc
Q 035893 571 KRLKALPKGLHNLSTLQYLTIGGA-LPS-LEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDM 648 (755)
Q Consensus 571 ~~l~~~~~~l~~l~~L~~L~ls~~-~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 648 (755)
...+.+|..+ ..++|+.|++++| +.. .+..+..+++|+.|++++|.+....+ ..+.++++|++|++++| ...
T Consensus 463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N-~l~ 536 (968)
T PLN00113 463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP----DELSSCKKLVSLDLSHN-QLS 536 (968)
T ss_pred eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC----hHHcCccCCCEEECCCC-ccc
Confidence 8777776654 4578888888887 221 12445667888999999998776655 45788899999999984 334
Q ss_pred ccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCcch
Q 035893 649 VSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPLI 726 (755)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 726 (755)
..+|... ..+++|++|++++|.....+|..+..+++|++|++++|+....+|..+...++....+.+++.+
T Consensus 537 ~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 537 GQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred ccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 4455443 5788999999999877778888889999999999999987777888666666666667777755
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-34 Score=342.40 Aligned_cols=505 Identities=17% Similarity=0.116 Sum_probs=340.0
Q ss_pred CCCccEEEEecCCCCCcCC-CCCCCCCcceEeecccccceeeCccccCCCCCCCCCcccEEEccccccccccccCCCCCc
Q 035893 126 FLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQG 204 (755)
Q Consensus 126 l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 204 (755)
..+++.|+++++.....+| .+..+++|++|+++++.-...++...+.. +++|++|+++++.-... .+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~-----l~~L~~L~Ls~n~l~~~-----~p-- 135 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT-----SSSLRYLNLSNNNFTGS-----IP-- 135 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhcc-----CCCCCEEECcCCccccc-----cC--
Confidence 3478999999876544555 68899999999999865434566555422 88999999988762211 11
Q ss_pred cccCCCcceEeecccccccccCCC---CCCCccEEEeccCcccc---ccCCCCCccceEEEcCCCCceeecccCCCCCCc
Q 035893 205 VERFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEECEELS---ISITSLPALCKMEIGGCKKVVWRSATDHLGSQN 278 (755)
Q Consensus 205 ~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 278 (755)
.+.+++|++|++++|. +.+.+|. .+++|++|++++|.... ..+..+++|+.|++.++....
T Consensus 136 ~~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------ 202 (968)
T PLN00113 136 RGSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG------------ 202 (968)
T ss_pred ccccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC------------
Confidence 3468899999999985 6667774 45778888887775332 223446666666666554221
Q ss_pred eeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCC
Q 035893 279 SVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGL 358 (755)
Q Consensus 279 ~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 358 (755)
.+|. .+.++.+|+.|++.++.-...++.. ...+++|++|++++|...
T Consensus 203 ---------------~~p~---------~l~~l~~L~~L~L~~n~l~~~~p~~---------l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 203 ---------------QIPR---------ELGQMKSLKWIYLGYNNLSGEIPYE---------IGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ---------------cCCh---------HHcCcCCccEEECcCCccCCcCChh---------HhcCCCCCEEECcCceec
Confidence 1111 1133455555555554322222111 112366677777666665
Q ss_pred cccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc
Q 035893 359 VKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV 437 (755)
Q Consensus 359 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 437 (755)
+.+|..++++++|+.|++++|.....+|. +..+++|++|++++|.....+|..+ ..+++|+.|++++|.....++..
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChh
Confidence 56666666677777777766654444432 3446667777777666555555544 56666777777664332223221
Q ss_pred -cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcce
Q 035893 438 -QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKS 516 (755)
Q Consensus 438 -~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 516 (755)
...++|+.|++++|.-...++ .....+++|+.++++++ .+.+.++.. .... ++|+.
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p-----------~~l~~~~~L~~L~Ls~n----------~l~~~~p~~-~~~~-~~L~~ 384 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIP-----------KNLGKHNNLTVLDLSTN----------NLTGEIPEG-LCSS-GNLFK 384 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCC-----------hHHhCCCCCcEEECCCC----------eeEeeCChh-HhCc-CCCCE
Confidence 223456666665554222222 12223345666665443 222222221 1222 58999
Q ss_pred EEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCC
Q 035893 517 LRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALP 596 (755)
Q Consensus 517 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~ 596 (755)
|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....++..+..+++|+.|++++| .
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~ 463 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN-K 463 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc-e
Confidence 999999988889999999999999999999777778888888999999999999988888888889999999999998 3
Q ss_pred CC--ccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecc
Q 035893 597 SL--EEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIF 674 (755)
Q Consensus 597 ~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 674 (755)
.. .+.....++|+.|++++|.+....+ ..+.++++|++|++++| .....+|... ..+++|++|+++
T Consensus 464 ~~~~~p~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~~L~~L~Ls 531 (968)
T PLN00113 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVP----RKLGSLSELMQLKLSEN-KLSGEIPDEL-------SSCKKLVSLDLS 531 (968)
T ss_pred eeeecCcccccccceEEECcCCccCCccC----hhhhhhhccCEEECcCC-cceeeCChHH-------cCccCCCEEECC
Confidence 22 1333345899999999999876655 55789999999999994 4445566544 578999999999
Q ss_pred cCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC-cccccceeecCCcch
Q 035893 675 SFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL-PSSLLRLNIAGCPLI 726 (755)
Q Consensus 675 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c~~l 726 (755)
+|.....+|..+..+++|++|++++|...+.+|.... +++|+.|++++|+..
T Consensus 532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 9876777888999999999999999976667776322 789999999999853
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-25 Score=223.53 Aligned_cols=340 Identities=19% Similarity=0.213 Sum_probs=186.4
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccC-CCCccEEEeccCCCCcccchhhhccCCCCccEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVAL-PSKLKKIQISYCDALKSLPEAWMCHTNSSLEIL 423 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 423 (755)
+.-+.|++++|.....-+..|.++++|+.+++.+| .++.+|.++. ...|+.|++.+|.+...-.+.+ ..++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhhhh
Confidence 45667888887765555566778888888888777 5777777766 4448888888877444444443 667788888
Q ss_pred EeccCCcccccccccCCC--CCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchh
Q 035893 424 IILYCNSLTYIAEVQLPP--SLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPAT 501 (755)
Q Consensus 424 ~l~~c~~l~~~~~~~~~~--~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~ 501 (755)
|++. |.+..++...+|. ++++|+++++. ++.+.. ..+-++++|.++. ++.|.++..
T Consensus 155 DLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~----------~~F~~lnsL~tlk----------LsrNrittL 212 (873)
T KOG4194|consen 155 DLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLET----------GHFDSLNSLLTLK----------LSRNRITTL 212 (873)
T ss_pred hhhh-chhhcccCCCCCCCCCceEEeecccc-cccccc----------ccccccchheeee----------cccCccccc
Confidence 8877 6777777666653 56677666632 333221 1222233344443 222322221
Q ss_pred hhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccC
Q 035893 502 LESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGL 580 (755)
Q Consensus 502 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l 580 (755)
-+. .+..+ +.|+.|++..|..-..-...|.++++|+.|.+..| .+..+.. .+..+.++++|++..|.....-..++
T Consensus 213 p~r-~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 213 PQR-SFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred CHH-Hhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccc
Confidence 111 12333 46666666666433222334566666666666666 3333332 33446666666666666444444456
Q ss_pred CCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccc---
Q 035893 581 HNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLED--- 655 (755)
Q Consensus 581 ~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--- 655 (755)
.++++|+.|++|++ |.++. ..+..+++|++|++++|.++.... ..|..|.+|++|++++| .+..+.+..
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~----~sf~~L~~Le~LnLs~N--si~~l~e~af~~ 363 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE----GSFRVLSQLEELNLSHN--SIDHLAEGAFVG 363 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh----hHHHHHHHhhhhccccc--chHHHHhhHHHH
Confidence 66666666666655 44443 445555666666666666655444 34555555555555552 222222111
Q ss_pred ------------------cccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCCCC-cccc
Q 035893 656 ------------------KRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEKGL-PSSL 715 (755)
Q Consensus 656 ------------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L 715 (755)
+....++..+++|+.|++.+ ++++.+|. .+..+++|++|++.+| .+..|.+.+| +-.|
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~L 441 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMEL 441 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccccchh
Confidence 00122334455555555555 45555555 5555555555555555 3455554444 3345
Q ss_pred cceee
Q 035893 716 LRLNI 720 (755)
Q Consensus 716 ~~L~i 720 (755)
++|.+
T Consensus 442 k~Lv~ 446 (873)
T KOG4194|consen 442 KELVM 446 (873)
T ss_pred hhhhh
Confidence 55443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=5e-22 Score=237.96 Aligned_cols=309 Identities=21% Similarity=0.294 Sum_probs=171.6
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEIL 423 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 423 (755)
++|+.|++.++. +..+|..+ ...+|+.|++.+|. +..++. ...+++|++|++++|..+..+|.. ..+++|+.|
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETL 662 (1153)
T ss_pred cccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEE
Confidence 456666666553 34555444 34566666666653 444433 233666666666666555555532 455666666
Q ss_pred EeccCCcccccccc-cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhh
Q 035893 424 IILYCNSLTYIAEV-QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATL 502 (755)
Q Consensus 424 ~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~ 502 (755)
++.+|..+..+|.. ..+++|+.|++++|..++.++.. ..+++|+.|++.+|..++. ++
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~------------i~l~sL~~L~Lsgc~~L~~-~p-------- 721 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG------------INLKSLYRLNLSGCSRLKS-FP-------- 721 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc------------CCCCCCCEEeCCCCCCccc-cc--------
Confidence 66666666555543 33455666666666666655521 1234566666666655554 11
Q ss_pred hhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC--------CCCCCCCceeEEeccCcCcc
Q 035893 503 ESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE--------GGLPCAKLRTLKIYDCKRLK 574 (755)
Q Consensus 503 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~--------~~~~l~~L~~L~l~~~~~l~ 574 (755)
..+++|++|+++++. .+.+|..+ .+++|++|++.++... .++. .....++|+.|++++|+...
T Consensus 722 ------~~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 722 ------DISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred ------cccCCcCeeecCCCc-cccccccc-cccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCcc
Confidence 122466666666664 33444433 4566666666554211 1111 11123566666666666666
Q ss_pred cccccCCCCCCcceeEeCCcCCCCc--cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCccccc
Q 035893 575 ALPKGLHNLSTLQYLTIGGALPSLE--EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFP 652 (755)
Q Consensus 575 ~~~~~l~~l~~L~~L~ls~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 652 (755)
.+|..+.++++|+.|++++| ..+. +....+++|+.|++++|......+ ....+|++|++++ +.++.+|
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C-~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~--n~i~~iP 862 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENC-INLETLPTGINLESLESLDLSGCSRLRTFP-------DISTNISDLNLSR--TGIEEVP 862 (1153)
T ss_pred ccChhhhCCCCCCEEECCCC-CCcCeeCCCCCccccCEEECCCCCcccccc-------ccccccCEeECCC--CCCccCh
Confidence 66666666666666666666 4333 222245666666666665443322 1234666677765 2444555
Q ss_pred ccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCC
Q 035893 653 LEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYF 706 (755)
Q Consensus 653 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 706 (755)
... ..+++|+.|++++|++++.+|..+..+++|+.+++++|..+..+
T Consensus 863 ~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 863 WWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 433 35667777777777777777766667777777777777666544
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=5.8e-24 Score=215.57 Aligned_cols=343 Identities=19% Similarity=0.226 Sum_probs=227.3
Q ss_pred cccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC
Q 035893 308 SNNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 387 (755)
Q Consensus 308 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 387 (755)
+.++++|+++++... .++.+|... ....+|+.|++.+|...+.-...+..++.|++|+++.| .+..++.
T Consensus 98 f~nl~nLq~v~l~~N-~Lt~IP~f~---------~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~ 166 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKN-ELTRIPRFG---------HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPK 166 (873)
T ss_pred HhcCCcceeeeeccc-hhhhccccc---------ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccC
Confidence 356667777766654 455443321 11145777777777655444445666777777777776 4555554
Q ss_pred ccC--CCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccC--CCCCcEEeeeCCcCCCCCcccccc
Q 035893 388 VAL--PSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQL--PPSLKQLDIYNCDNIRTLTVEEGI 463 (755)
Q Consensus 388 ~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~L~~l~~~~~~ 463 (755)
-.+ -.++++|++++|.+ +.+..+-| .++.+|..|.++. |.++.+|...| ++.|+.|++..+ .++.+
T Consensus 167 ~sfp~~~ni~~L~La~N~I-t~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN-~iriv------ 236 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRI-TTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN-RIRIV------ 236 (873)
T ss_pred CCCCCCCCceEEeeccccc-cccccccc-cccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc-ceeee------
Confidence 333 35677777777763 33333322 5666777777776 56666664422 334444444332 12211
Q ss_pred cccCCCccccccccccceeeccCCCcccc-ccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEE
Q 035893 464 QCSSSSSRRYTSYLLEDLVIWECPSLTCI-FSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETIS 542 (755)
Q Consensus 464 ~~~~~~~~~~~~~~L~~l~i~~c~~l~~l-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 542 (755)
+.+.+.+.++++.+ +..|.+...-...+.+. .+++.|+++.|+....-..++.++++|+.|+
T Consensus 237 ---------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l--~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 237 ---------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL--EKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred ---------------hhhhhcCchhhhhhhhhhcCcccccCcceeee--cccceeecccchhhhhhcccccccchhhhhc
Confidence 12233334444444 55555544433333443 5899999999988777778899999999999
Q ss_pred EecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccc
Q 035893 543 ISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIW 620 (755)
Q Consensus 543 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~ 620 (755)
+++|..-..-+..+..+++|++|++++|...+--+..+..+..|++|.++++ +..+. ..+..+.+|+.||+++|.+..
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 9999544444566777899999999999966655667889999999999988 44443 667788999999999998754
Q ss_pred hhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCC
Q 035893 621 KSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGD 699 (755)
Q Consensus 621 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 699 (755)
... +....+.+|+.|++|++.+ +.+..++. +++..++.||+|++.++ -+.++.+ .+..+ +|++|.+..
T Consensus 380 ~IE-Daa~~f~gl~~LrkL~l~g--Nqlk~I~k------rAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 380 CIE-DAAVAFNGLPSLRKLRLTG--NQLKSIPK------RAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EEe-cchhhhccchhhhheeecC--ceeeecch------hhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence 322 1224578899999999998 46777775 34678999999999995 5555544 66666 888887653
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.7e-21 Score=233.47 Aligned_cols=336 Identities=22% Similarity=0.294 Sum_probs=264.2
Q ss_pred ccccccEEEEecCCC------CcccCccccCCC-CccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhcc
Q 035893 343 LSCRLEYLKLSNCEG------LVKLPQSSLSLS-SLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCH 415 (755)
Q Consensus 343 ~~~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 415 (755)
.+++|+.|.+..+.. ...+|..+..++ +|+.|.+.+++ +..+|....+.+|++|++.+|. +..++... .
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~ 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--H 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-cccccccc--c
Confidence 358999999976531 124566666664 69999999884 6778877778999999999987 66777765 7
Q ss_pred CCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccC
Q 035893 416 TNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSK 495 (755)
Q Consensus 416 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~ 495 (755)
.+++|+.|++++|+.++.+|.....++|+.|++++|..+..++.+ ...+++|+.|++.+|..++.+ +.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-----------i~~L~~L~~L~L~~c~~L~~L-p~ 699 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-----------IQYLNKLEDLDMSRCENLEIL-PT 699 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-----------hhccCCCCEEeCCCCCCcCcc-CC
Confidence 899999999999988999988777889999999999998887632 234568999999999999883 31
Q ss_pred CCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccc
Q 035893 496 NELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKA 575 (755)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 575 (755)
+.-.++|+.|++++|..++.+|.. .++|++|++++| .+..+|..+ .+++|++|.+.++.....
T Consensus 700 ------------~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 700 ------------GINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred ------------cCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-cccccccccccccchhhc
Confidence 111268999999999888877753 568999999998 467788654 578999999887653211
Q ss_pred ------c-cccCCCCCCcceeEeCCcCCC---CccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccC
Q 035893 576 ------L-PKGLHNLSTLQYLTIGGALPS---LEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCD 645 (755)
Q Consensus 576 ------~-~~~l~~l~~L~~L~ls~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 645 (755)
+ +......++|+.|++++| +. ++..++.+++|+.|++++|......+. .. ++++|++|++++ |
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n-~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~-c 835 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDI-PSLVELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSG-C 835 (1153)
T ss_pred cccccccchhhhhccccchheeCCCC-CCccccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCC-C
Confidence 1 112234579999999998 44 345577889999999999987665542 22 789999999999 4
Q ss_pred CCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC-cccccceeecCCc
Q 035893 646 DDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL-PSSLLRLNIAGCP 724 (755)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c~ 724 (755)
..+..+|. .+++|++|++++ +.++.+|.++..+++|+.|++++|++++.+|.... +++|+.+++++|+
T Consensus 836 ~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 836 SRLRTFPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Cccccccc----------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 56666663 457899999999 58899999999999999999999999999987433 7899999999999
Q ss_pred chhHh
Q 035893 725 LIEEK 729 (755)
Q Consensus 725 ~l~~~ 729 (755)
.|++.
T Consensus 905 ~L~~~ 909 (1153)
T PLN03210 905 ALTEA 909 (1153)
T ss_pred ccccc
Confidence 88753
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.1e-23 Score=215.00 Aligned_cols=340 Identities=19% Similarity=0.246 Sum_probs=260.5
Q ss_pred CCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcc-cCCC-c
Q 035893 311 ICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLV-SFPE-V 388 (755)
Q Consensus 311 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~-~ 388 (755)
+.+++-|.+..- .+..++.+ .+.+.+|++|.+++|.. ..+...+..++.|+.+.+..|+.-. .+|. +
T Consensus 31 Mt~~~WLkLnrt-~L~~vPeE---------L~~lqkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 31 MTQMTWLKLNRT-KLEQVPEE---------LSRLQKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred hhheeEEEechh-hhhhChHH---------HHHHhhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 445555665543 44444433 23348899999999874 4556678889999999998875332 3444 4
Q ss_pred cCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccC--CCCCcEEeeeCCcCCCCCccccccccc
Q 035893 389 ALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQL--PPSLKQLDIYNCDNIRTLTVEEGIQCS 466 (755)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~L~~l~~~~~~~~~ 466 (755)
..+..|..|++++|+ ++..|..+ ...+++-+|++++ +++..||..-+ ++.|-.|++++ ..|+.+++.
T Consensus 100 F~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ------ 168 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ------ 168 (1255)
T ss_pred cccccceeeecchhh-hhhcchhh--hhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHH------
Confidence 558999999999998 88888887 7788999999998 78888886533 45566777776 345555531
Q ss_pred CCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecC
Q 035893 467 SSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNC 546 (755)
Q Consensus 467 ~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 546 (755)
.+. + ..|++|++++|+.....-..+-.+++|++|++++.
T Consensus 169 -----------~RR-----------------------------L-~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 169 -----------IRR-----------------------------L-SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred -----------HHH-----------------------------H-hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 111 1 36888999998865443333445778888889886
Q ss_pred CC-CCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhh
Q 035893 547 EN-LVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMI 624 (755)
Q Consensus 547 ~~-l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 624 (755)
.. +..+|.++..+.+|..++++.|. +..+|+.+.++++|+.|++|++ |..+....+...+|++|+++.|+.+..+
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP-- 284 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP-- 284 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch--
Confidence 53 34588888889999999999887 7888899999999999999988 6666666677789999999999887754
Q ss_pred hcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCC
Q 035893 625 ERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLK 704 (755)
Q Consensus 625 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 704 (755)
..++.++.|+.|.+.+|.-..+.+|... ..+..|+++...+ +.+.-+|+++..|+.|+.|.++.| .+.
T Consensus 285 ---~avcKL~kL~kLy~n~NkL~FeGiPSGI-------GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N-rLi 352 (1255)
T KOG0444|consen 285 ---DAVCKLTKLTKLYANNNKLTFEGIPSGI-------GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLI 352 (1255)
T ss_pred ---HHHhhhHHHHHHHhccCcccccCCccch-------hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc-cee
Confidence 5679999999999998766777787665 6889999999998 689999999999999999999999 566
Q ss_pred CCCC-CCCcccccceeecCCcchhH
Q 035893 705 YFPE-KGLPSSLLRLNIAGCPLIEE 728 (755)
Q Consensus 705 ~l~~-~~~~~~L~~L~i~~c~~l~~ 728 (755)
.+|+ ..+++.|+.||+..+|+|-.
T Consensus 353 TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred echhhhhhcCCcceeeccCCcCccC
Confidence 6777 44589999999999998753
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=5.8e-24 Score=227.21 Aligned_cols=436 Identities=18% Similarity=0.173 Sum_probs=225.5
Q ss_pred CCCcceEEEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCC-CCCCCCCcceEeecccccceeeCccccCCCCCCCC
Q 035893 101 HKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPF 179 (755)
Q Consensus 101 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 179 (755)
.-+|+.|+++++....+|.-+. .+..|+.|.++.+. +..+| +...+.+|++|.|.+ +.++..|.++.. +
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it--~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~------l 113 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQIT--LLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISE------L 113 (1081)
T ss_pred eeeeEEeeccccccccCCchhh--hHHHHhhcccchhh-HhhCchhhhhhhcchhheecc-chhhcCchhHHh------h
Confidence 4458888888888888887664 47788888888743 67777 677788888888874 566666655433 6
Q ss_pred CcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCCCCCCccEEEeccCccccccCCCCCccce-EE
Q 035893 180 PCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIEECEELSISITSLPALCK-ME 258 (755)
Q Consensus 180 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~-L~ 258 (755)
.+|..|+++.+... ..|.-+..+..++.+..++|.++. .++... .+.+++..+............++. ++
T Consensus 114 knl~~LdlS~N~f~------~~Pl~i~~lt~~~~~~~s~N~~~~-~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~~ld 184 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG------PIPLVIEVLTAEEELAASNNEKIQ-RLGQTS--IKKLDLRLNVLGGSFLIDIYNLTHQLD 184 (1081)
T ss_pred hcccccccchhccC------CCchhHHhhhHHHHHhhhcchhhh-hhcccc--chhhhhhhhhcccchhcchhhhheeee
Confidence 66666776665511 111113333444444444442221 222111 222222111111101111111111 33
Q ss_pred EcCCCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchhhhhhHHHHHH
Q 035893 259 IGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSLVAEEEKDQQQ 338 (755)
Q Consensus 259 l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 338 (755)
+...... ......+..++.+.+..... ..+..+-++++.|+...|+-.+.
T Consensus 185 Lr~N~~~--~~dls~~~~l~~l~c~rn~l-----------------s~l~~~g~~l~~L~a~~n~l~~~----------- 234 (1081)
T KOG0618|consen 185 LRYNEME--VLDLSNLANLEVLHCERNQL-----------------SELEISGPSLTALYADHNPLTTL----------- 234 (1081)
T ss_pred cccchhh--hhhhhhccchhhhhhhhccc-----------------ceEEecCcchheeeeccCcceee-----------
Confidence 3222211 01111122222222222110 01112334566666666543321
Q ss_pred hhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCcccchhhhccCC
Q 035893 339 QLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSLPEAWMCHTN 417 (755)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 417 (755)
.......+|++++++.+.. ..+|.+++.+.+|+.+.+..|.. ..+|. .....+|+.|.+.+|. +..+|... .++
T Consensus 235 ~~~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~ 309 (1081)
T KOG0618|consen 235 DVHPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGL 309 (1081)
T ss_pred ccccccccceeeecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--ccc
Confidence 1222347899999998864 56778888999999999988854 55543 4457888899888888 66676654 678
Q ss_pred CCccEEEeccCCcccccccccC---CCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCcccccc
Q 035893 418 SSLEILIILYCNSLTYIAEVQL---PPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFS 494 (755)
Q Consensus 418 ~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~ 494 (755)
.+|++|++.. +++..+|...+ ..+++.+..+.. .+..++- +
T Consensus 310 ~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~---------------------------------~- 353 (1081)
T KOG0618|consen 310 KSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPS---------------------------------Y- 353 (1081)
T ss_pred ceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhc-ccccccc---------------------------------c-
Confidence 8899999988 67877775321 112333333221 1111110 0
Q ss_pred CCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCC-CCCCCCceeEEeccCcCc
Q 035893 495 KNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEG-GLPCAKLRTLKIYDCKRL 573 (755)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l 573 (755)
-+...+.|+.|.+.+|.........+.++++|+.|++++| .+.+||+. +.++..|++|+++||. +
T Consensus 354 ------------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L 419 (1081)
T KOG0618|consen 354 ------------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-L 419 (1081)
T ss_pred ------------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-h
Confidence 0111134555556655555544444555666666666665 45555543 2335556666666655 5
Q ss_pred ccccccCCCCCCcceeEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEecc
Q 035893 574 KALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGC 644 (755)
Q Consensus 574 ~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (755)
+.+|..+.+++.|++|...++.-..-+....++.|+.+|++.|++....... . ...++|++||++||
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~---~-~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE---A-LPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhh---h-CCCcccceeeccCC
Confidence 5555555555556555554430111134445555666666655544433221 1 11145666666653
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2e-24 Score=209.52 Aligned_cols=470 Identities=20% Similarity=0.203 Sum_probs=254.1
Q ss_pred hcCCCCCCcceEEEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCC-CCCCCCCcceEeecccccceeeCccccCCC
Q 035893 96 DMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDD 174 (755)
Q Consensus 96 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 174 (755)
+.+..+..|.+|.+..+...++|..++. +..++.++.+++. +..+| .++.+++|+.|+.+. +++.+++.+++.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~--l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~-- 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGE--LEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSS-NELKELPDSIGR-- 135 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHH--HHHHHHhhcccch-HhhccHHHhhhhhhhhhhccc-cceeecCchHHH--
Confidence 3444556788888888888888887764 7788888888765 56666 788888888888887 456666665544
Q ss_pred CCCCCCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCCC---CCCccEEEeccCccccccCCC-
Q 035893 175 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEECEELSISITS- 250 (755)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~~l~~~~~~- 250 (755)
+..|+.++..++. ....+.....+.+|..+++.++. ++ .+|+. +..|++++...+- +....+.
T Consensus 136 ----~~~l~dl~~~~N~------i~slp~~~~~~~~l~~l~~~~n~-l~-~l~~~~i~m~~L~~ld~~~N~-L~tlP~~l 202 (565)
T KOG0472|consen 136 ----LLDLEDLDATNNQ------ISSLPEDMVNLSKLSKLDLEGNK-LK-ALPENHIAMKRLKHLDCNSNL-LETLPPEL 202 (565)
T ss_pred ----Hhhhhhhhccccc------cccCchHHHHHHHHHHhhccccc-hh-hCCHHHHHHHHHHhcccchhh-hhcCChhh
Confidence 6667777666554 22222235566677777777774 55 44432 3344444332211 1111112
Q ss_pred --CCccceEEEcCCCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchh
Q 035893 251 --LPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSL 328 (755)
Q Consensus 251 --l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l 328 (755)
+.+|..|++...+-.. +- ++.+|+.+..+
T Consensus 203 g~l~~L~~LyL~~Nki~~-----------------------------------------------lP--ef~gcs~L~El 233 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRF-----------------------------------------------LP--EFPGCSLLKEL 233 (565)
T ss_pred cchhhhHHHHhhhccccc-----------------------------------------------CC--CCCccHHHHHH
Confidence 2222222222211100 00 22233333333
Q ss_pred hhhhHHHH-HHh-hhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC-CccCCCCccEEEeccCCCC
Q 035893 329 VAEEEKDQ-QQQ-LCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIQISYCDAL 405 (755)
Q Consensus 329 ~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~~ 405 (755)
..+.+... +++ ..+.++++.+||+.+|. +.++|+.+.-+.+|+.|++++|. +..+| .++.+ .|+.|.+.+|+ +
T Consensus 234 h~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP-l 309 (565)
T KOG0472|consen 234 HVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP-L 309 (565)
T ss_pred HhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc-h
Confidence 33222111 111 12245888999999886 67889888889999999999885 44444 56667 88899999888 5
Q ss_pred cccchhhhccCCC-CccEEEe-ccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceee
Q 035893 406 KSLPEAWMCHTNS-SLEILII-LYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVI 483 (755)
Q Consensus 406 ~~~~~~~~~~~~~-~L~~L~l-~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i 483 (755)
+.+...++..+.+ -|++|.= .-|..+..-..+. -. .+..........++..+.+.+++
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~---------------e~-----~~t~~~~~~~~~~~~i~tkiL~~ 369 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT---------------ET-----AMTLPSESFPDIYAIITTKILDV 369 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc---------------cc-----cCCCCCCcccchhhhhhhhhhcc
Confidence 5444443312111 1222210 0011111000000 00 00000000011122223333333
Q ss_pred ccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCce
Q 035893 484 WECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLR 563 (755)
Q Consensus 484 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 563 (755)
++ .+++. ++...|. .+. ..-....+++.|+ +..+|..+..+..+.+.-+..+..+..+|..+..+++|.
T Consensus 370 s~-~qlt~-VPdEVfe-------a~~-~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 370 SD-KQLTL-VPDEVFE-------AAK-SEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred cc-ccccc-CCHHHHH-------Hhh-hcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence 22 11111 1111100 010 0235677888774 455666666666665555555556666777777788888
Q ss_pred eEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEe
Q 035893 564 TLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIR 642 (755)
Q Consensus 564 ~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 642 (755)
.|++++|. +.++|..++.+..|+.|+++.+ ++.++.....+..++.+-.++|
T Consensus 439 ~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n-------------------------- 491 (565)
T KOG0472|consen 439 FLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNN-------------------------- 491 (565)
T ss_pred eeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccc--------------------------
Confidence 88888877 7778887777878888888766 2222211112222333333333
Q ss_pred ccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 643 GCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
.+..++..+ +..+.+|..||+.+ +.+..+|+.+++|++|++|+++||+ ++ .|.
T Consensus 492 ----qi~~vd~~~------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 492 ----QIGSVDPSG------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred ----cccccChHH------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc-cC-CCH
Confidence 333333321 23566666666666 6899999999999999999999996 44 444
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=4e-23 Score=220.85 Aligned_cols=194 Identities=26% Similarity=0.305 Sum_probs=137.4
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCC-C-CCceeEEeccCcCcccccc-cCCCCCCcce
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLP-C-AKLRTLKIYDCKRLKALPK-GLHNLSTLQY 588 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~-l-~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~ 588 (755)
.+|+.|.+.+| .++.+|.....+.+|++|++..| ++.++|..+.. . .+|+.|..+.++ +...|. +=...+.|+.
T Consensus 287 ~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 287 TSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHH
Confidence 46777777777 45566666667888888888887 67777764433 2 235666666665 333332 2245667888
Q ss_pred eEeCCcCCCCc---cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCC
Q 035893 589 LTIGGALPSLE---EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLP 665 (755)
Q Consensus 589 L~ls~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (755)
|.+.++ .--. +.+.++.+|++|++++|.+...+. ..+.+++.|++|+++| +.+..+|... ..+
T Consensus 364 LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSG--NkL~~Lp~tv-------a~~ 429 (1081)
T KOG0618|consen 364 LYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSG--NKLTTLPDTV-------ANL 429 (1081)
T ss_pred HHHhcC-cccccchhhhccccceeeeeecccccccCCH----HHHhchHHhHHHhccc--chhhhhhHHH-------Hhh
Confidence 888876 2111 566777888889988887765544 4578888889999988 5778888666 578
Q ss_pred CccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCC-CCCCc-ccccceeecCCcc
Q 035893 666 ASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFP-EKGLP-SSLLRLNIAGCPL 725 (755)
Q Consensus 666 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~-~~L~~L~i~~c~~ 725 (755)
..|++|...+ +.+..+| .+..++.|+.+|++.| +++.+. +...+ ++|++||++||+.
T Consensus 430 ~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 430 GRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhHHHhhcC-Cceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 8888888877 5888888 7888899999999988 566542 23446 8899999999885
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=4e-24 Score=207.45 Aligned_cols=333 Identities=22% Similarity=0.241 Sum_probs=217.6
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
..|++|+..+|. ++.+|..++.+.+|+.|++..| .+..+|.+..+..|++|+++.|. ++.+|.... ..++++..||
T Consensus 183 ~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~-~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNSNL-LETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHL-KHLNSLLVLD 258 (565)
T ss_pred HHHHhcccchhh-hhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHHh-cccccceeee
Confidence 678888887764 6678888888899999999888 57778888888889999888887 666666654 6788888899
Q ss_pred eccCCcccccccc-cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhh
Q 035893 425 ILYCNSLTYIAEV-QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLE 503 (755)
Q Consensus 425 l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~ 503 (755)
+.+ ++++.+|.+ ....+|++||+++. .+..++.+-+.. .|+.+.+.+ |.+...-.
T Consensus 259 LRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl------------hL~~L~leG----------NPlrTiRr 314 (565)
T KOG0472|consen 259 LRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL------------HLKFLALEG----------NPLRTIRR 314 (565)
T ss_pred ccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc------------eeeehhhcC----------CchHHHHH
Confidence 888 788888877 34567888888774 355555332211 233333222 11111000
Q ss_pred hhh-ccCCCCCcceE-------EEccCccch----hhh----hhcCCCCCcCeEEEecCCCCCccCCCCCCCCC---cee
Q 035893 504 SLE-VGNLPPSLKSL-------RVNFCSKLE----LIA----ERLDNNTSLETISISNCENLVSFPEGGLPCAK---LRT 564 (755)
Q Consensus 504 ~~~-~~~~~~~L~~L-------~l~~~~~~~----~~~----~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~---L~~ 564 (755)
..- .|.- .-|++| .++.-...+ ..+ .......+.+.|++++- .++.+|........ ..+
T Consensus 315 ~ii~~gT~-~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 315 EIISKGTQ-EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHcccHH-HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEE
Confidence 000 0000 001111 000000000 000 11234567888888885 67777765444333 778
Q ss_pred EEeccCcCcccccccCCCCCCcce-eEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEe
Q 035893 565 LKIYDCKRLKALPKGLHNLSTLQY-LTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIR 642 (755)
Q Consensus 565 L~l~~~~~l~~~~~~l~~l~~L~~-L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 642 (755)
.++++|+ +.++|..+..+..+.+ +.++++ +...+.....+++|..|++++|..-. .| ..++.+..|++|+++
T Consensus 393 VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP----~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 393 VNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LP----EEMGSLVRLQTLNLS 466 (565)
T ss_pred Eecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cc----hhhhhhhhhheeccc
Confidence 8888888 6777777766665544 344555 22333567778999999999886544 33 346778889999999
Q ss_pred ccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCC-CCcccccceee
Q 035893 643 GCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEK-GLPSSLLRLNI 720 (755)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i 720 (755)
.| ....+|.-. ..+..++.+-.++ +.++.+++ ++..+.+|..|++.+| .+..+|+. +=..+|++|++
T Consensus 467 ~N--rFr~lP~~~-------y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 467 FN--RFRMLPECL-------YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLEL 535 (565)
T ss_pred cc--ccccchHHH-------hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEe
Confidence 84 555555433 2355566666665 68999988 5999999999999999 78888884 33889999999
Q ss_pred cCCc
Q 035893 721 AGCP 724 (755)
Q Consensus 721 ~~c~ 724 (755)
+|+|
T Consensus 536 ~gNp 539 (565)
T KOG0472|consen 536 DGNP 539 (565)
T ss_pred cCCc
Confidence 9998
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=5.9e-22 Score=202.36 Aligned_cols=298 Identities=20% Similarity=0.257 Sum_probs=159.6
Q ss_pred ccccEEEEecCCCCc-ccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 345 CRLEYLKLSNCEGLV-KLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
|.|+.+.+..|..-. .+|+.+-.+.-|..|+++.|. +..+|. +....++-+|++++|. ++.+|..++ .+++.|-.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLf 154 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLF 154 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhh
Confidence 455555555544322 455555556666666666653 333332 3345556666666655 455555444 45555666
Q ss_pred EEeccCCcccccccc-cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchh
Q 035893 423 LIILYCNSLTYIAEV-QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPAT 501 (755)
Q Consensus 423 L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~ 501 (755)
|++++ +++..+|+- ..+..|++|++++++ |....+...|++
T Consensus 155 LDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NP-------------------------L~hfQLrQLPsm------------ 196 (1255)
T KOG0444|consen 155 LDLSN-NRLEMLPPQIRRLSMLQTLKLSNNP-------------------------LNHFQLRQLPSM------------ 196 (1255)
T ss_pred hcccc-chhhhcCHHHHHHhhhhhhhcCCCh-------------------------hhHHHHhcCccc------------
Confidence 66655 455555433 223345555555543 111111110111
Q ss_pred hhhhhccCCCCCcceEEEccCccc-hhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccC
Q 035893 502 LESLEVGNLPPSLKSLRVNFCSKL-ELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGL 580 (755)
Q Consensus 502 ~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l 580 (755)
++|+.|.+++.+.+ ..+|.++..+.+|+.+|++.| .+..+|..+..+++|+.|++++|. ++.+..+.
T Consensus 197 ----------tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~ 264 (1255)
T KOG0444|consen 197 ----------TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTE 264 (1255)
T ss_pred ----------hhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccH
Confidence 23444444443332 334555555556666666555 455555555555666666666655 33333444
Q ss_pred CCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccC
Q 035893 581 HNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLG 659 (755)
Q Consensus 581 ~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (755)
.....|++|++|.+ +..++.....+++|+.|++.+|+..-... |++++.+.+|+.+..++ +.++-+|...
T Consensus 265 ~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi---PSGIGKL~~Levf~aan--N~LElVPEgl---- 335 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI---PSGIGKLIQLEVFHAAN--NKLELVPEGL---- 335 (1255)
T ss_pred HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC---ccchhhhhhhHHHHhhc--cccccCchhh----
Confidence 44555566666554 33444445555666666666665544333 25666777777776665 3555555443
Q ss_pred CCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 660 TALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 660 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
..+..|+.|.+++ +.+-.+|..+.-++-|+.|++.+|+++..-|.
T Consensus 336 ---cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 336 ---CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ---hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 4566777777766 56777777777777777777777777665444
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=5.3e-15 Score=164.54 Aligned_cols=256 Identities=30% Similarity=0.406 Sum_probs=168.7
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
.+-..|+++++. ++.+|+.+. ++|+.|++.+| .++.+|. .+++|++|++++|+ +..+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccC-----cccccceee
Confidence 456778888885 457787664 47889999887 4666764 36889999998886 556653 236788888
Q ss_pred eccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhh
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLES 504 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~ 504 (755)
+++ +.++.++. .+.+|+.|+++++ +++.++
T Consensus 269 Ls~-N~L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP---------------------------------------------- 298 (788)
T PRK15387 269 IFS-NPLTHLPA--LPSGLCKLWIFGN-QLTSLP---------------------------------------------- 298 (788)
T ss_pred ccC-Cchhhhhh--chhhcCEEECcCC-cccccc----------------------------------------------
Confidence 888 46777663 5566777777765 333332
Q ss_pred hhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCC
Q 035893 505 LEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLS 584 (755)
Q Consensus 505 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~ 584 (755)
..|++|+.|++++|... .+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++|. +..+|.. .+
T Consensus 299 ----~~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~ 362 (788)
T PRK15387 299 ----VLPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PS 362 (788)
T ss_pred ----ccccccceeECCCCccc-cCCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Cc
Confidence 11246777777776433 33331 235666777776 45555531 1367777777776 4445543 24
Q ss_pred CcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCC
Q 035893 585 TLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALP 663 (755)
Q Consensus 585 ~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 663 (755)
+|+.|+++++ +..++ ..+.+|+.|++++|.+...+. ..++|+.|++++| .+..+|.
T Consensus 363 ~L~~L~Ls~N~L~~LP---~l~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N--~LssIP~---------- 419 (788)
T PRK15387 363 ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV--------LPSELKELMVSGN--RLTSLPM---------- 419 (788)
T ss_pred ccceehhhccccccCc---ccccccceEEecCCcccCCCC--------cccCCCEEEccCC--cCCCCCc----------
Confidence 5666777665 22222 224578888888887664221 1357888999884 4556663
Q ss_pred CCCccceEecccCCCCccccccccCCCCccEEeeCCCCC
Q 035893 664 LPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPK 702 (755)
Q Consensus 664 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 702 (755)
.+.+|+.|++++ +.++.+|..+..+++|+.|++++|+.
T Consensus 420 l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 420 LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 345788899988 57888998888999999999999953
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.1e-14 Score=159.80 Aligned_cols=255 Identities=29% Similarity=0.374 Sum_probs=185.2
Q ss_pred CCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEee
Q 035893 369 SSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDI 448 (755)
Q Consensus 369 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 448 (755)
..-..|+++++ .++.+|. ...++|+.|++.+|+ ++.+|. ..++|++|++++ |+++.+|. .+++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~-N~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSG-NQLTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCC-----CCCCCcEEEecC-CccCcccC--cccccceeec
Confidence 44667888888 5667775 234689999999887 555663 347889999988 57887763 4566777777
Q ss_pred eCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhh
Q 035893 449 YNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELI 528 (755)
Q Consensus 449 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 528 (755)
+++. ++.++ .+|++|+.|++++|.. +.+
T Consensus 270 s~N~-L~~Lp--------------------------------------------------~lp~~L~~L~Ls~N~L-t~L 297 (788)
T PRK15387 270 FSNP-LTHLP--------------------------------------------------ALPSGLCKLWIFGNQL-TSL 297 (788)
T ss_pred cCCc-hhhhh--------------------------------------------------hchhhcCEEECcCCcc-ccc
Confidence 6643 22222 1336899999999854 455
Q ss_pred hhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCc
Q 035893 529 AERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTN 607 (755)
Q Consensus 529 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~ 607 (755)
|. ..++|+.|++++| .+..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++| +..++ ..+.+
T Consensus 298 P~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls~LP---~lp~~ 363 (788)
T PRK15387 298 PV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLASLP---TLPSE 363 (788)
T ss_pred cc---cccccceeECCCC-ccccCCCC---cccccccccccCc-ccccccc---ccccceEecCCCccCCCC---CCCcc
Confidence 54 3578999999998 66677652 2478899999988 4556642 258999999988 33333 23578
Q ss_pred eeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCcccccccc
Q 035893 608 LHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIV 687 (755)
Q Consensus 608 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 687 (755)
|+.|++++|.+... + . ...+|+.|++++| .+..+|. .+++|+.|+++++ .++.+|..
T Consensus 364 L~~L~Ls~N~L~~L-P----~---l~~~L~~LdLs~N--~Lt~LP~----------l~s~L~~LdLS~N-~LssIP~l-- 420 (788)
T PRK15387 364 LYKLWAYNNRLTSL-P----A---LPSGLKELIVSGN--RLTSLPV----------LPSELKELMVSGN-RLTSLPML-- 420 (788)
T ss_pred cceehhhccccccC-c----c---cccccceEEecCC--cccCCCC----------cccCCCEEEccCC-cCCCCCcc--
Confidence 99999999987642 2 1 2357999999984 4556663 4578999999995 78888853
Q ss_pred CCCCccEEeeCCCCCCCCCCCCCC-cccccceeecCCcc
Q 035893 688 DLQNLTQLDLGDCPKLKYFPEKGL-PSSLLRLNIAGCPL 725 (755)
Q Consensus 688 ~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c~~ 725 (755)
..+|+.|++++| +++.+|.... +++|+.|++++|+.
T Consensus 421 -~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 421 -PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 357899999999 7899987533 78999999999984
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=8.5e-13 Score=148.22 Aligned_cols=94 Identities=21% Similarity=0.348 Sum_probs=54.5
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
.+...|+++++. +..+|..+. +.|+.|++++| .++.+|.. ..++|++|++++|. +..+|..+ ..+|+.|+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~~l----~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNN-ELKSLPEN-LQGNIKTLYANSNQ-LTSIPATL----PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCC-CCCcCChh-hccCCCEEECCCCc-cccCChhh----hccccEEE
Confidence 456778887764 445665442 46777777777 45556542 23577777777776 44555432 23577777
Q ss_pred eccCCcccccccccCCCCCcEEeeeC
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYN 450 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~ 450 (755)
+++| .++.+|.. ++++|+.|++++
T Consensus 248 Ls~N-~L~~LP~~-l~s~L~~L~Ls~ 271 (754)
T PRK15370 248 LSIN-RITELPER-LPSALQSLDLFH 271 (754)
T ss_pred CcCC-ccCcCChh-HhCCCCEEECcC
Confidence 7663 45555432 334455555543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=8.6e-13 Score=148.14 Aligned_cols=244 Identities=23% Similarity=0.339 Sum_probs=152.5
Q ss_pred CCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEee
Q 035893 369 SSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDI 448 (755)
Q Consensus 369 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 448 (755)
.+...|+++++ .++.+|.. ..+.|+.|++++|+ +..+|... .++|+.|++++ ++++.+|. .++++|+.|++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~-N~LtsLP~-~l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPENL----QGNIKTLYANS-NQLTSIPA-TLPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChhh----ccCCCEEECCC-CccccCCh-hhhccccEEEC
Confidence 45678899887 46667642 35789999999987 66777654 25899999987 46777764 34556777777
Q ss_pred eCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhh
Q 035893 449 YNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELI 528 (755)
Q Consensus 449 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 528 (755)
++|. ++.++. .++.+|+.|++++|.. ..+
T Consensus 249 s~N~-L~~LP~-------------------------------------------------~l~s~L~~L~Ls~N~L-~~L 277 (754)
T PRK15370 249 SINR-ITELPE-------------------------------------------------RLPSALQSLDLFHNKI-SCL 277 (754)
T ss_pred cCCc-cCcCCh-------------------------------------------------hHhCCCCEEECcCCcc-Ccc
Confidence 7653 223220 1224788888887754 356
Q ss_pred hhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCc
Q 035893 529 AERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTN 607 (755)
Q Consensus 529 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~ 607 (755)
|..+ .++|+.|++++| .++.+|..+. ++|+.|++++|. +..+|..+ .++|+.|++++| +..++ ...+++
T Consensus 278 P~~l--~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP--~~l~~s 347 (754)
T PRK15370 278 PENL--PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENALTSLP--ASLPPE 347 (754)
T ss_pred cccc--CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCccccCC--hhhcCc
Confidence 6544 357888888887 5666765442 478888888877 34455433 257777887776 22222 223467
Q ss_pred eeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccc-
Q 035893 608 LHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSI- 686 (755)
Q Consensus 608 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~- 686 (755)
|+.|++++|++... + ..+ .+.|++|++++| .+..+|... ..+|+.|++++ +.+..+|..+
T Consensus 348 L~~L~Ls~N~L~~L-P----~~l--p~~L~~LdLs~N--~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~ 408 (754)
T PRK15370 348 LQVLDVSKNQITVL-P----ETL--PPTITTLDVSRN--ALTNLPENL---------PAALQIMQASR-NNLVRLPESLP 408 (754)
T ss_pred ccEEECCCCCCCcC-C----hhh--cCCcCEEECCCC--cCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHH
Confidence 77777777765532 1 111 246777777763 344555422 34577777777 4566665533
Q ss_pred ---cCCCCccEEeeCCCC
Q 035893 687 ---VDLQNLTQLDLGDCP 701 (755)
Q Consensus 687 ---~~~~~L~~L~l~~c~ 701 (755)
..++++..|++.+|+
T Consensus 409 ~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 409 HFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhcCCCccEEEeeCCC
Confidence 234667777777774
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=1e-13 Score=119.72 Aligned_cols=175 Identities=21% Similarity=0.305 Sum_probs=108.6
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
..+..|.+++|. +..+|..++.+.+|+.|++++| .++++|.++.++++|+.|+++-|. +..+|.+|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 356666777763 4444555677777777777776 667777777777777777777665 5666677777777777777
Q ss_pred CCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceE
Q 035893 592 GGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSL 671 (755)
Q Consensus 592 s~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 671 (755)
.++ +...... |..|..+..|+-|++++ +..+.+|.+. ..+++|+-|
T Consensus 110 tyn----------------------nl~e~~l---pgnff~m~tlralyl~d--ndfe~lp~dv-------g~lt~lqil 155 (264)
T KOG0617|consen 110 TYN----------------------NLNENSL---PGNFFYMTTLRALYLGD--NDFEILPPDV-------GKLTNLQIL 155 (264)
T ss_pred ccc----------------------ccccccC---CcchhHHHHHHHHHhcC--CCcccCChhh-------hhhcceeEE
Confidence 654 2222111 12344455555556655 3455555554 356666666
Q ss_pred ecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC----cccccceeecCCcc
Q 035893 672 TIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL----PSSLLRLNIAGCPL 725 (755)
Q Consensus 672 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~~~L~~L~i~~c~~ 725 (755)
.+.. +.+-++|..++.++.|++|.+.+| .++.+|++.- ..+=+...+.++|.
T Consensus 156 ~lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 156 SLRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred eecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecChhhhhhhhhhhHHHHhhhhCCC
Confidence 6666 567777778888888888888888 6777766311 22334455555654
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.18 E-value=1.3e-12 Score=129.03 Aligned_cols=144 Identities=19% Similarity=0.296 Sum_probs=85.0
Q ss_pred hccccccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcc--cCccccCCCCccEEEEccCCC
Q 035893 304 ELGISNNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVK--LPQSSLSLSSLREIEICKCSS 381 (755)
Q Consensus 304 ~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~ 381 (755)
...+...+++++.+++..|..++.. .+..+...|++|++|++++|+.+.. +....+++..++.+...+|..
T Consensus 182 ~~sla~~C~~l~~l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e 254 (483)
T KOG4341|consen 182 LLSLARYCRKLRHLNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE 254 (483)
T ss_pred HHHHHHhcchhhhhhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc
Confidence 3445567778888888888777764 4445566678888888888875543 222345566666776666643
Q ss_pred cccC--CC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc---cCCCCCcEEeeeCCcCC
Q 035893 382 LVSF--PE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV---QLPPSLKQLDIYNCDNI 454 (755)
Q Consensus 382 l~~~--~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~L 454 (755)
.+.- .. .+....+.++++.+|..+++.....+...+..|+.|+.++|..+++.... +...+|+.+.+++|.++
T Consensus 255 ~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 255 LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 3211 11 12355566666667766666554444345667777777777666654432 22344555555555543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=7.7e-13 Score=129.57 Aligned_cols=264 Identities=17% Similarity=0.205 Sum_probs=166.5
Q ss_pred eEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCc--cCCCC
Q 035893 316 RLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV--ALPSK 393 (755)
Q Consensus 316 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~l~~ 393 (755)
.+.+... .++.|++..|.. +++|+.|++++|.....-|+.|.++++|..|.+.+++.+++++.. +.+.+
T Consensus 71 eirLdqN-~I~~iP~~aF~~--------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 71 EIRLDQN-QISSIPPGAFKT--------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred EEEeccC-CcccCChhhccc--------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 3444443 677776654322 389999999999887778889999999999999997789999864 44889
Q ss_pred ccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccC--CCCCcEEeeeCCc-----CCCCCccc-ccccc
Q 035893 394 LKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQL--PPSLKQLDIYNCD-----NIRTLTVE-EGIQC 465 (755)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~-----~L~~l~~~-~~~~~ 465 (755)
|+.|.+.-|+ +..+....+ ..+++|..|.+.+ +.+..+....+ ...++.+.+...+ ++.++.-- .....
T Consensus 142 lqrLllNan~-i~Cir~~al-~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 142 LQRLLLNANH-INCIRQDAL-RDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHhcChhh-hcchhHHHH-HHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 9999888887 555555544 7788888888888 67777766533 2345555544433 12111100 00000
Q ss_pred cCCCcccc-----ccccccceeec--cCCCcccc---ccCCCcc-hhhhhhhccCCCCCcceEEEccCccchhhhhhcCC
Q 035893 466 SSSSSRRY-----TSYLLEDLVIW--ECPSLTCI---FSKNELP-ATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDN 534 (755)
Q Consensus 466 ~~~~~~~~-----~~~~L~~l~i~--~c~~l~~l---~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 534 (755)
........ ...+...++-. .|. ++++ +..+.+. +..+..-+..+ ++|+.|++++|...+.-+.+|..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcc
Confidence 00000011 11111111111 011 2221 2333322 22233234445 58899999988777777788888
Q ss_pred CCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc
Q 035893 535 NTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA 594 (755)
Q Consensus 535 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~ 594 (755)
...+++|.+..| .++.+.. .+..+..|+.|.+.+|.....-|..|..+.+|.+|.+-++
T Consensus 297 ~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 297 AAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 888999999888 5555543 4556888888999998877777778888888888888754
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=4.9e-12 Score=132.04 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCcceEEEccCccch----hhhhhcCCCCCcCeEEEecCCCCCc----cCCCCCCCCCceeEEeccCc
Q 035893 512 PSLKSLRVNFCSKLE----LIAERLDNNTSLETISISNCENLVS----FPEGGLPCAKLRTLKIYDCK 571 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~ 571 (755)
++|+.|++++|.... .++..+..+++|++|++++|..... ++..+..+++|++|++++|.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 466777777665542 2233444556666666666632211 11112223455555555554
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=4.1e-12 Score=132.65 Aligned_cols=184 Identities=17% Similarity=0.085 Sum_probs=85.8
Q ss_pred CCcceEEEccCccchhhhhhcCCC---CCcCeEEEecCCCCC----ccCCCCCCC-CCceeEEeccCcCcc----ccccc
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNN---TSLETISISNCENLV----SFPEGGLPC-AKLRTLKIYDCKRLK----ALPKG 579 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~l~----~~~~~~~~l-~~L~~L~l~~~~~l~----~~~~~ 579 (755)
++|+.|++++|......+..+..+ ++|++|++++|.... .+...+..+ ++|++|++++|.... .++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 356666666655543333322222 336666666664221 111122233 566666666665432 12223
Q ss_pred CCCCCCcceeEeCCcCCCC-------ccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCccccc
Q 035893 580 LHNLSTLQYLTIGGALPSL-------EEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFP 652 (755)
Q Consensus 580 l~~l~~L~~L~ls~~~~~l-------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 652 (755)
+..++.|++|++++| .-. .......++|++|++++|.+.......+...+..+++|++|++++|......+.
T Consensus 161 ~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 161 LRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 445556666666655 111 011222346666666666654433322224455667777777776432111111
Q ss_pred ccccccCCCCCCCCccceEecccCCCCc-----cccccccCCCCccEEeeCCC
Q 035893 653 LEDKRLGTALPLPASLTSLTIFSFPSLE-----RLSSSIVDLQNLTQLDLGDC 700 (755)
Q Consensus 653 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c 700 (755)
.-... .....+.|++|++++| .++ .+...+..+++|+++++++|
T Consensus 240 ~l~~~---~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 240 ALASA---LLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHH---HhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 00000 0002356666666665 332 22334455567777777776
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=2.1e-12 Score=126.49 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=41.0
Q ss_pred CccEEEEccCCCcccCCCccC--CCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCccccccccc
Q 035893 370 SLREIEICKCSSLVSFPEVAL--PSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQ 438 (755)
Q Consensus 370 ~L~~L~l~~~~~l~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 438 (755)
.-..+++..| .++.+|+.++ +++|+.|++++|.+....|..+ .++++|..|-+.+.+++++++...
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF--~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF--KGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhh--hhhHhhhHHHhhcCCchhhhhhhH
Confidence 4455666666 4666665443 6777777777776444444444 667777777666666777766543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=1.5e-12 Score=112.57 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=85.5
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcc-cccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLK-ALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~l~~l~~L~~L~ 590 (755)
.+|+.|++++|+ .+.+|..++.+++|+.|+++-| .+..+|.+++++|.|++|++..|.... .+|.-|..++.|+.|.
T Consensus 56 ~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 589999999884 6677888999999999999987 788899999999999999999887443 4565566666666666
Q ss_pred eCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 591 IGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 591 ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
++++ +..+++..+.+++|+.|.+.+|...+.+ ..+..+..|++|.+.+
T Consensus 134 l~dndfe~lp~dvg~lt~lqil~lrdndll~lp-----keig~lt~lrelhiqg 182 (264)
T KOG0617|consen 134 LGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP-----KEIGDLTRLRELHIQG 182 (264)
T ss_pred hcCCCcccCChhhhhhcceeEEeeccCchhhCc-----HHHHHHHHHHHHhccc
Confidence 6665 2233344455555555555555443322 1234444444444444
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=1.8e-12 Score=128.14 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=138.8
Q ss_pred CccEEEEecCCCCCcCC---CCCCCCCcceEeecccccceeeCccccCCCCCCCCCcccEEEccccccccccccCCCCCc
Q 035893 128 NLVTLKFEDCGMCTALP---SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQG 204 (755)
Q Consensus 128 ~L~~L~L~~~~~~~~lp---~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 204 (755)
.|+.|.+++|.....-+ ....+|++++|.+.+|..+.+.....+. ..+++|++|.+..|..+++......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l--- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL--- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH---
Confidence 45666666665544433 2345666666666666554443211111 1156666666666665554332222
Q ss_pred cccCCCcceEeecccccccc----cCCCCCCCccEEEeccCccccc-----cCCCCCccceEEEcCCCCceeecc---cC
Q 035893 205 VERFPKLRELHILRCSKLQG----TFPEHLPALEMLVIEECEELSI-----SITSLPALCKMEIGGCKKVVWRSA---TD 272 (755)
Q Consensus 205 ~~~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~~~~~~~---~~ 272 (755)
...+++|++++++-|+.+++ .+.++...++++...+|..+.. .-....-+..+++.+|..+..... ..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 34566666666666665554 2223444455554445543321 111233444455555544433221 11
Q ss_pred CCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEE
Q 035893 273 HLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKL 352 (755)
Q Consensus 273 ~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l 352 (755)
.+..++.+..+++.+.... ....+....++|+.+.+.+|.+++.. .+..+...++.|+.+++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~-----------~l~aLg~~~~~L~~l~l~~c~~fsd~-------~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDE-----------VLWALGQHCHNLQVLELSGCQQFSDR-------GFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhhHhhhhcccCCCCCchH-----------HHHHHhcCCCceEEEeccccchhhhh-------hhhhhhcCChhhhhhcc
Confidence 3344455555444332221 12223344566666666666654442 33344445566666666
Q ss_pred ecCCCCccc--CccccCCCCccEEEEccCCCcccCCC------ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 353 SNCEGLVKL--PQSSLSLSSLREIEICKCSSLVSFPE------VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 353 ~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
..|...... -..-.+++.|++|.++.|..+++... ...+..|..+.+++|+.+.+...... ..+++|+.++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~ 432 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIE 432 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceee
Confidence 666543321 11223456666666666655554311 11255666666666665554433332 4566666666
Q ss_pred eccCCcccccc
Q 035893 425 ILYCNSLTYIA 435 (755)
Q Consensus 425 l~~c~~l~~~~ 435 (755)
+.+|..++.-+
T Consensus 433 l~~~q~vtk~~ 443 (483)
T KOG4341|consen 433 LIDCQDVTKEA 443 (483)
T ss_pred eechhhhhhhh
Confidence 66666555443
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=3.4e-09 Score=121.48 Aligned_cols=103 Identities=23% Similarity=0.251 Sum_probs=54.6
Q ss_pred ccccEEEEecCCC-CcccCc-cccCCCCccEEEEccCCCcccCCCc-cCCCCccEEEeccCCCCcccchhhhccCCCCcc
Q 035893 345 CRLEYLKLSNCEG-LVKLPQ-SSLSLSSLREIEICKCSSLVSFPEV-ALPSKLKKIQISYCDALKSLPEAWMCHTNSSLE 421 (755)
Q Consensus 345 ~~L~~L~l~~~~~-~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 421 (755)
++|++|-+.++.. +..++. .|..++.|+.|++++|..+..+|.. +.+-+|++|+++++. +..+|..+ ..+..|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l--~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGL--GNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHH--HHHHhhh
Confidence 4566666655542 222222 3555666666666666666655543 336666666666655 44556555 5566666
Q ss_pred EEEeccCCcccccccccC-CCCCcEEeeeC
Q 035893 422 ILIILYCNSLTYIAEVQL-PPSLKQLDIYN 450 (755)
Q Consensus 422 ~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~ 450 (755)
+|++..+..+..++.... ..+|++|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 666665544444433322 44455555433
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.2e-09 Score=105.26 Aligned_cols=127 Identities=18% Similarity=0.177 Sum_probs=59.4
Q ss_pred CcceEEEccCccc-hhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccccc--ccCCCCCCccee
Q 035893 513 SLKSLRVNFCSKL-ELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALP--KGLHNLSTLQYL 589 (755)
Q Consensus 513 ~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~l~~l~~L~~L 589 (755)
.|+.|.++.|... +++-..+..+|+|+.|++.+|..+........-+..|+.|++++|.... .+ .....+|.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence 4444555555443 2223333445555555555553222111122224455555555555322 22 233555566666
Q ss_pred EeCCc-CCCCc-cC------CCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 590 TIGGA-LPSLE-EE------DGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 590 ~ls~~-~~~l~-~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
.++.| |+.+. +. ...+++|++|++..|++...... ..+..+++|+.|.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl---~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL---NHLRTLENLKHLRITL 335 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccccccc---chhhccchhhhhhccc
Confidence 66555 33333 11 24566777777777765443221 2344555555555443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.4e-08 Score=101.60 Aligned_cols=183 Identities=16% Similarity=0.134 Sum_probs=127.9
Q ss_pred CCcceEEEccCccch--hhhhhcCCCCCcCeEEEecCCCCCccCCC--CCCCCCceeEEeccCcCcc-cccccCCCCCCc
Q 035893 512 PSLKSLRVNFCSKLE--LIAERLDNNTSLETISISNCENLVSFPEG--GLPCAKLRTLKIYDCKRLK-ALPKGLHNLSTL 586 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~~~~l~-~~~~~l~~l~~L 586 (755)
++++.|+++.|-... .+......+|+|+.|+++.|. +..+..+ -..++.|+.|.++.|...- .+-..+..+|+|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 689999999984432 334445679999999999984 3333222 2247899999999998543 222356788999
Q ss_pred ceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCC
Q 035893 587 QYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPL 664 (755)
Q Consensus 587 ~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (755)
+.|++.++ ..... .....+..|+.|++++|++...... .....++.|+.|+++.|......+|+.. -......
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~--s~~kt~~ 299 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVE--SLDKTHT 299 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccchhhhhccccCcchhcCCCcc--chhhhcc
Confidence 99999987 22222 4556678899999999998775532 3568899999999998654444444321 0111236
Q ss_pred CCccceEecccCCCCccccc--cccCCCCccEEeeCCCC
Q 035893 665 PASLTSLTIFSFPSLERLSS--SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~ 701 (755)
+++|++|.+..+ .+..++. .+..+++|+.|.+..++
T Consensus 300 f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 300 FPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 889999999994 5555554 67778888888877775
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=4e-08 Score=112.78 Aligned_cols=198 Identities=21% Similarity=0.263 Sum_probs=93.2
Q ss_pred cCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc--CCCCccCCCCCCcee
Q 035893 532 LDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA--LPSLEEEDGLPTNLH 609 (755)
Q Consensus 532 l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~--~~~l~~~~~~~~~L~ 609 (755)
|..+|.|++||+++|..+..+|..++.+-+|+.|++++.. ...+|.++.++..|.+|++..+ ....+.....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 4445555555555555555555555555555555555544 3445555555555555555433 111112223344555
Q ss_pred eEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCC-ccc-------------cc---ccccccCCCCCCCCccceEe
Q 035893 610 FLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDD-MVS-------------FP---LEDKRLGTALPLPASLTSLT 672 (755)
Q Consensus 610 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~-------------~~---~~~~~~~~~~~~~~~L~~L~ 672 (755)
+|.+..-....+.... ..+.++.+|+.+.+...+.. .+. +. ............+.+|+.|.
T Consensus 646 ~L~l~~s~~~~~~~~l--~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLL--KELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELS 723 (889)
T ss_pred EEEeeccccccchhhH--HhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEE
Confidence 5555444311111100 22344444444444331110 000 00 00000111234577777777
Q ss_pred cccCCCCcccc----c-cccC-CCCccEEeeCCCCCCCCCCCCCCcccccceeecCCcchhHhhcc
Q 035893 673 IFSFPSLERLS----S-SIVD-LQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPLIEEKCRK 732 (755)
Q Consensus 673 l~~~~~l~~l~----~-~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~ 732 (755)
+.+|......- . .... ++++..+.+.+|...+.+....++++|+.|.+..|+.+.++..+
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 77775533211 1 1112 55677777777766666665556778888888887776665544
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=8.6e-08 Score=87.67 Aligned_cols=109 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCCcceEEEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCCcceEeecccccceeeCccccCCCCCCCCC
Q 035893 101 HKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFP 180 (755)
Q Consensus 101 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 180 (755)
+.++++|++.|+.+..+. .++ ..+.+|+.|++++|. ++.++.+..+++|++|++++ +.+..+...+.. .+|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~-~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~-----~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLG-ATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSN-NRISSISEGLDK-----NLP 88 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHHHH-----H-T
T ss_pred cccccccccccccccccc-chh-hhhcCCCEEECCCCC-CccccCccChhhhhhcccCC-CCCCccccchHH-----hCC
Confidence 346788888888877764 343 247888999998865 77788888889999999987 567776543321 178
Q ss_pred cccEEEccccccccccccCCCCCccccCCCcceEeeccccccc
Q 035893 181 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQ 223 (755)
Q Consensus 181 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 223 (755)
+|++|.+.++. +.++..... ...+++|++|++.+|| +.
T Consensus 89 ~L~~L~L~~N~-I~~l~~l~~---L~~l~~L~~L~L~~NP-v~ 126 (175)
T PF14580_consen 89 NLQELYLSNNK-ISDLNELEP---LSSLPKLRVLSLEGNP-VC 126 (175)
T ss_dssp T--EEE-TTS----SCCCCGG---GGG-TT--EEE-TT-G-GG
T ss_pred cCCEEECcCCc-CCChHHhHH---HHcCCCcceeeccCCc-cc
Confidence 88888887765 333332222 6678889999998887 44
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=9.2e-07 Score=90.89 Aligned_cols=162 Identities=21% Similarity=0.376 Sum_probs=80.2
Q ss_pred CCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCccCCCCCCceeeEeec
Q 035893 535 NTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFLKIE 614 (755)
Q Consensus 535 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~~L~l~ 614 (755)
+.+++.|++++| .++.+|. + -++|++|.+++|..+..+|..+. ++|+.|++++| ..+. ..+++|+.|+++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C-s~L~---sLP~sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC-PEIS---GLPESVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc-cccc---ccccccceEEeC
Confidence 455555555555 4454541 1 12455555555555555544332 35555555555 3332 233455555555
Q ss_pred CCcccchhhhhcCcCcCCC-CCccEEEEeccCCC-cccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCc
Q 035893 615 GNMEIWKSMIERGRGFHRF-SSLRELIIRGCDDD-MVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNL 692 (755)
Q Consensus 615 ~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L 692 (755)
.+.... +..+ +.|++|.+.+++.. ...++. ..+++|++|++++|..+ .+|..+. .+|
T Consensus 121 ~n~~~~---------L~~LPssLk~L~I~~~n~~~~~~lp~---------~LPsSLk~L~Is~c~~i-~LP~~LP--~SL 179 (426)
T PRK15386 121 GSATDS---------IKNVPNGLTSLSINSYNPENQARIDN---------LISPSLKTLSLTGCSNI-ILPEKLP--ESL 179 (426)
T ss_pred CCCCcc---------cccCcchHhheecccccccccccccc---------ccCCcccEEEecCCCcc-cCccccc--ccC
Confidence 433211 1222 24556665432111 111110 24577777887776544 3443344 578
Q ss_pred cEEeeCCCCCC-CCCCCCCCcccccceeecCCcchhH
Q 035893 693 TQLDLGDCPKL-KYFPEKGLPSSLLRLNIAGCPLIEE 728 (755)
Q Consensus 693 ~~L~l~~c~~l-~~l~~~~~~~~L~~L~i~~c~~l~~ 728 (755)
+.|+++.|... -.++...+++++ .|++.+|-++..
T Consensus 180 k~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 180 QSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 88887765311 134444556677 777777765533
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=3.3e-08 Score=93.86 Aligned_cols=192 Identities=21% Similarity=0.224 Sum_probs=104.6
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcC-cccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKR-LKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~l~~l~~L~~L~ 590 (755)
.+|+.+.++.|. .+.+-.....=|.|+++.+.+. .....| .+.....+....-..-.. .+..-..+...+.|+++|
T Consensus 214 ~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s-~~~~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 214 RNLKTLKFSALS-TENIVDIELLKPTLQTICVHNT-TIQDVP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred hhhheeeeeccc-hhheeceeecCchhheeeeecc-cccccc-cccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 678888888774 3333332334566777777653 222221 111111111111111000 001111234456677777
Q ss_pred eCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccc
Q 035893 591 IGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLT 669 (755)
Q Consensus 591 ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 669 (755)
+|++ |..+.......|.++.|+++.|.+... ..+..+++|..||+++ +.+..+...+ ..+.+++
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~--N~Ls~~~Gwh-------~KLGNIK 355 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSG--NLLAECVGWH-------LKLGNIK 355 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccceeee------hhhhhcccceEeeccc--chhHhhhhhH-------hhhcCEe
Confidence 7766 444445555667777777777776654 3367777777777776 3444444333 3566677
Q ss_pred eEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC---CCCcccccceeecCCc
Q 035893 670 SLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE---KGLPSSLLRLNIAGCP 724 (755)
Q Consensus 670 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~ 724 (755)
.|.++. +.+..+. +++.+-+|..|++++| ++..+.+ .+-+|.|+.+.+.++|
T Consensus 356 tL~La~-N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQ-NKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeehhh-hhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 777776 4555555 5666677777777777 5555443 2336667777777766
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=6.6e-09 Score=107.21 Aligned_cols=187 Identities=24% Similarity=0.307 Sum_probs=129.2
Q ss_pred eEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-
Q 035893 516 SLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA- 594 (755)
Q Consensus 516 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~- 594 (755)
..+++.|. ...+|..+..|..|+.+.+..| .+..+|..++++..|..++++.|. +..+|..+..|+ |+.|-++++
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc
Confidence 34555553 3344555566667777777666 556677777777777777777776 555666555554 666666665
Q ss_pred CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecc
Q 035893 595 LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIF 674 (755)
Q Consensus 595 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 674 (755)
+..++...+..+.|..||++.|.+.+.. ..+..+.+|+.|.++. +.+..+|.+. .--.|.+||++
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slp-----sql~~l~slr~l~vrR--n~l~~lp~El--------~~LpLi~lDfS 219 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLP-----SQLGYLTSLRDLNVRR--NHLEDLPEEL--------CSLPLIRLDFS 219 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhch-----HHhhhHHHHHHHHHhh--hhhhhCCHHH--------hCCceeeeecc
Confidence 4455555556777888888888766543 3467888888888876 4677777766 34568889988
Q ss_pred cCCCCccccccccCCCCccEEeeCCCCCCCCCCCC----CCcccccceeecCC
Q 035893 675 SFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEK----GLPSSLLRLNIAGC 723 (755)
Q Consensus 675 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~i~~c 723 (755)
+ +++..+|..|..|..|++|-+.+|+ +++-|.. |...-.++|++.-|
T Consensus 220 c-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 C-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred c-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 7 6899999999999999999999996 5665553 33556678887777
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.44 E-value=6.4e-07 Score=92.02 Aligned_cols=154 Identities=25% Similarity=0.433 Sum_probs=71.7
Q ss_pred CCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCC
Q 035893 417 NSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKN 496 (755)
Q Consensus 417 ~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~ 496 (755)
+.+++.|++++| .++.+| .+|++|++|.+++|.+++.++- .+ .+.|+.|.+++|..++.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~------------~L-P~nLe~L~Ls~Cs~L~s----- 109 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPG------------SI-PEGLEKLTVCHCPEISG----- 109 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCc------------hh-hhhhhheEccCcccccc-----
Confidence 355555555554 455555 4555566666666555544431 00 12355555555444332
Q ss_pred CcchhhhhhhccCCCCCcceEEEccCcc--chhhhhhcCCCCCcCeEEEecCCCC--CccCCCCCCCCCceeEEeccCcC
Q 035893 497 ELPATLESLEVGNLPPSLKSLRVNFCSK--LELIAERLDNNTSLETISISNCENL--VSFPEGGLPCAKLRTLKIYDCKR 572 (755)
Q Consensus 497 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~ 572 (755)
+|++|+.|++..+.. +..+| ++|+.|.+.++... ..++..+ -++|++|.+++|..
T Consensus 110 -------------LP~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~ 168 (426)
T PRK15386 110 -------------LPESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSN 168 (426)
T ss_pred -------------cccccceEEeCCCCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCc
Confidence 235666666654322 22222 24556665432211 1111100 14777777777774
Q ss_pred cccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCC
Q 035893 573 LKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGN 616 (755)
Q Consensus 573 l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~ 616 (755)
. .+|..+. .+|+.|+++.+ ...+. .....++++ .|++.+|
T Consensus 169 i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 169 I-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred c-cCccccc--ccCcEEEecccccccccCccccccccc-Eechhhh
Confidence 3 2333333 46777777653 01111 222333455 5655555
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1.8e-07 Score=85.53 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCC
Q 035893 582 NLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGT 660 (755)
Q Consensus 582 ~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (755)
+...+++|++.|+ |+.++.....+.+|+.|++++|.+... ..+..++.|++|++++| .+..++...
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N--~I~~i~~~l----- 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNN--RISSISEGL----- 83 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS-----S-CHHH-----
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCC--CCCccccch-----
Confidence 3445566666655 444443333456677777777766554 34566777777777763 344443211
Q ss_pred CCCCCCccceEecccCCCCccccc--cccCCCCccEEeeCCCCCCCCCCCC-----CCcccccceeecCCc
Q 035893 661 ALPLPASLTSLTIFSFPSLERLSS--SIVDLQNLTQLDLGDCPKLKYFPEK-----GLPSSLLRLNIAGCP 724 (755)
Q Consensus 661 ~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~ 724 (755)
...+++|++|++++ +.+.++.. .+..+++|+.|++.+||- ...+.. ..+|+|+.||-....
T Consensus 84 -~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 84 -DKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -HHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred -HHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence 01356777777776 45555543 677899999999999963 433431 116788888765544
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.43 E-value=1.5e-08 Score=98.72 Aligned_cols=244 Identities=20% Similarity=0.185 Sum_probs=138.3
Q ss_pred ccccccEEEEecCCCCcc----cCccccCCCCccEEEEccCCCccc----CC--------CccCCCCccEEEeccCCCCc
Q 035893 343 LSCRLEYLKLSNCEGLVK----LPQSSLSLSSLREIEICKCSSLVS----FP--------EVALPSKLKKIQISYCDALK 406 (755)
Q Consensus 343 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~----~~--------~~~~l~~L~~L~l~~~~~~~ 406 (755)
.+..++.+++++|.+... +...+.+.++|+..++++. +... +| .+..+++|+++++++|-.-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 346788899998876543 3335666778888888764 2221 12 12346688999998887443
Q ss_pred ccchh---hhccCCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceee
Q 035893 407 SLPEA---WMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVI 483 (755)
Q Consensus 407 ~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i 483 (755)
..+.. ++ .++..|++|++.+|. +.......+..- |..+..
T Consensus 107 ~g~~~l~~ll-~s~~~L~eL~L~N~G-lg~~ag~~l~~a-----------------------------------l~~l~~ 149 (382)
T KOG1909|consen 107 KGIRGLEELL-SSCTDLEELYLNNCG-LGPEAGGRLGRA-----------------------------------LFELAV 149 (382)
T ss_pred cchHHHHHHH-HhccCHHHHhhhcCC-CChhHHHHHHHH-----------------------------------HHHHHH
Confidence 33222 22 557777887777752 221111000000 001100
Q ss_pred ccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccc----hhhhhhcCCCCCcCeEEEecCCCCCc----cCCC
Q 035893 484 WECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKL----ELIAERLDNNTSLETISISNCENLVS----FPEG 555 (755)
Q Consensus 484 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~----~~~~ 555 (755)
.. ....++.|+.+...+|..- +.+...+...+.|+++.+..|..-.. +...
T Consensus 150 ~k---------------------k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea 208 (382)
T KOG1909|consen 150 NK---------------------KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA 208 (382)
T ss_pred Hh---------------------ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence 00 1222356777776666432 12334455667777777777732211 2223
Q ss_pred CCCCCCceeEEeccCcCccc----ccccCCCCCCcceeEeCCcCCCCc-------cCCCCCCceeeEeecCCcccchhhh
Q 035893 556 GLPCAKLRTLKIYDCKRLKA----LPKGLHNLSTLQYLTIGGALPSLE-------EEDGLPTNLHFLKIEGNMEIWKSMI 624 (755)
Q Consensus 556 ~~~l~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~ls~~~~~l~-------~~~~~~~~L~~L~l~~~~~~~~~~~ 624 (755)
+..++.|++|++.+|.+... +...+..++.|+++++++|+-.-. ......++|++|.+.+|.++.....
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 45577888888887765442 233567777888888888833322 2233467888888888887665443
Q ss_pred hcCcCcCCCCCccEEEEeccC
Q 035893 625 ERGRGFHRFSSLRELIIRGCD 645 (755)
Q Consensus 625 ~~~~~l~~l~~L~~L~l~~~~ 645 (755)
.....+...+.|+.|+|++|.
T Consensus 289 ~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHhcchhhHHhcCCccc
Confidence 322334557788888888753
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=8.2e-08 Score=93.67 Aligned_cols=186 Identities=17% Similarity=0.106 Sum_probs=83.8
Q ss_pred cCCCCCcCeEEEecCCCCCccCC----CCCCCCCceeEEeccCcCcccc-------------cccCCCCCCcceeEeCCc
Q 035893 532 LDNNTSLETISISNCENLVSFPE----GGLPCAKLRTLKIYDCKRLKAL-------------PKGLHNLSTLQYLTIGGA 594 (755)
Q Consensus 532 l~~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~l~~~-------------~~~l~~l~~L~~L~ls~~ 594 (755)
+..+|.|++++||+|-.-...+. .+.++..|++|++.+|..-..- ..-.+.-+.|+++..+.+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34455666666666632222211 2233556666666666521110 011233455555555544
Q ss_pred CCCCc-------cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccc-cccCCCCCCCC
Q 035893 595 LPSLE-------EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLED-KRLGTALPLPA 666 (755)
Q Consensus 595 ~~~l~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 666 (755)
..-. ..+...+.|+.+.++.|.+......-....+..+++|+.||+.+|. |..++ ....++++..+
T Consensus 168 -rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-----ft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 168 -RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-----FTLEGSVALAKALSSWP 241 (382)
T ss_pred -ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-----hhhHHHHHHHHHhcccc
Confidence 1110 2223335566666666654433322222345666666666666531 11111 11223445555
Q ss_pred ccceEecccCCCCcc-----ccccccCCCCccEEeeCCCCCCCCCCCCC------CcccccceeecCCc
Q 035893 667 SLTSLTIFSFPSLER-----LSSSIVDLQNLTQLDLGDCPKLKYFPEKG------LPSSLLRLNIAGCP 724 (755)
Q Consensus 667 ~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~l~~~~------~~~~L~~L~i~~c~ 724 (755)
+|+.|.+++|..-.. +...-...|+|+.|.+.+| .++.-.... --+.|++|++++|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 666666666532221 1112223566666666666 333311100 03566666666664
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=1.8e-07 Score=89.05 Aligned_cols=229 Identities=16% Similarity=0.112 Sum_probs=117.5
Q ss_pred CCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCC--ccccccCCCcchhhhhhhccCCCCCcce
Q 035893 439 LPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPS--LTCIFSKNELPATLESLEVGNLPPSLKS 516 (755)
Q Consensus 439 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~--l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 516 (755)
|...|..|.+++-.. -+. ..+......++....+.+|+.+.++.|.. +.. +...-|.|.+
T Consensus 180 f~~~l~~l~vs~~~~--p~~-~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~---------------~~~~kptl~t 241 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKD--PID-RSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD---------------IELLKPTLQT 241 (490)
T ss_pred hhhheeEEEecCCCC--CCc-cccccccccccchHHhhhhheeeeeccchhheec---------------eeecCchhhe
Confidence 344566666665331 011 12333334455556678888888888753 333 2223367888
Q ss_pred EEEccCccchhhhhhcCCCCCcCeEEEecCCC-C--CccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCC
Q 035893 517 LRVNFCSKLELIAERLDNNTSLETISISNCEN-L--VSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGG 593 (755)
Q Consensus 517 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-l--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~ 593 (755)
+.+.+... ...|. + +|.-..-|.++-.. . +......-.+..|+++++++|. ...+...+.-.|.++.|++|+
T Consensus 242 ~~v~~s~~-~~~~~-l--~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~ 316 (490)
T KOG1259|consen 242 ICVHNTTI-QDVPS-L--LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQ 316 (490)
T ss_pred eeeecccc-ccccc-c--cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEeccc
Confidence 87765422 11111 1 11111111111100 0 0011112224455666666655 333434455556666666665
Q ss_pred cCCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEe
Q 035893 594 ALPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLT 672 (755)
Q Consensus 594 ~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 672 (755)
+ .-.. .....+++|+.||+++|....... .-..+-+.++|.+++ +.++.+..-. .+-+|+.||
T Consensus 317 N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-----wh~KLGNIKtL~La~--N~iE~LSGL~--------KLYSLvnLD 380 (490)
T KOG1259|consen 317 N-RIRTVQNLAELPQLQLLDLSGNLLAECVG-----WHLKLGNIKTLKLAQ--NKIETLSGLR--------KLYSLVNLD 380 (490)
T ss_pred c-ceeeehhhhhcccceEeecccchhHhhhh-----hHhhhcCEeeeehhh--hhHhhhhhhH--------hhhhheecc
Confidence 5 1111 234445666666666665443321 123455666777766 3444444322 566677777
Q ss_pred cccCCCCccccc--cccCCCCccEEeeCCCCCCCCCCC
Q 035893 673 IFSFPSLERLSS--SIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 673 l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
+++ ++++.+.+ +++++|.|+.+.+.+|| +..+++
T Consensus 381 l~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 381 LSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred ccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 777 46666655 88899999999999996 555555
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.8e-09 Score=98.10 Aligned_cols=180 Identities=17% Similarity=0.164 Sum_probs=109.0
Q ss_pred CCcceEEEccCccch-hhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccc--cCCCCCCcce
Q 035893 512 PSLKSLRVNFCSKLE-LIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPK--GLHNLSTLQY 588 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~ 588 (755)
++|+.+|++...... .+...+..|.+|+.|.+.|+..-..+...+..-..|+.|+++.|...+.... .+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 579999999876653 3445567799999999999865555666677778899999998877665432 3466666766
Q ss_pred eEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCcc
Q 035893 589 LTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASL 668 (755)
Q Consensus 589 L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 668 (755)
|+++-| ...+..... ..-+--+.|+.|+++|+...+..-..+ ..-..+++|
T Consensus 265 LNlsWc----------------------~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~-----tL~~rcp~l 315 (419)
T KOG2120|consen 265 LNLSWC----------------------FLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLS-----TLVRRCPNL 315 (419)
T ss_pred cCchHh----------------------hccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHH-----HHHHhCCce
Confidence 666655 222221110 001112345555555532222111000 011356677
Q ss_pred ceEecccCCCCccc-cccccCCCCccEEeeCCCCCCCCCCCCCC-----cccccceeecCC
Q 035893 669 TSLTIFSFPSLERL-SSSIVDLQNLTQLDLGDCPKLKYFPEKGL-----PSSLLRLNIAGC 723 (755)
Q Consensus 669 ~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~~~L~~L~i~~c 723 (755)
.+||+++|..++.= -..+..|+.|++|.++.|- .|++..+ -|+|.+|++.||
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY---~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY---DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhc---CCChHHeeeeccCcceEEEEeccc
Confidence 77777776666652 2267788888888888884 3333222 578888888887
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.28 E-value=7.3e-07 Score=95.86 Aligned_cols=178 Identities=24% Similarity=0.281 Sum_probs=114.4
Q ss_pred CCcceEEEccCccchhhhhhcCCCC-CcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNT-SLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
+.+..+++.++.... ++.....++ +|+.|++++| .+..+|..+..+++|+.|++++|+ +..+|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhee
Confidence 467777777775443 344345553 7888888887 666666566677888888888887 555655545777888888
Q ss_pred eCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccc
Q 035893 591 IGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLT 669 (755)
Q Consensus 591 ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 669 (755)
++++ +..++.....+..|+++.+++|+..... ..+..+..+..+.+.++ .+..++... ..+++++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n--~~~~~~~~~-------~~l~~l~ 258 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNN--KLEDLPESI-------GNLSNLE 258 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCc--eeeeccchh-------ccccccc
Confidence 8876 4444444445566888888888533322 23566666776666552 232222211 3566788
Q ss_pred eEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 670 SLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 670 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
.|++++ +.+..++. +..+.+++.|+++++......+.
T Consensus 259 ~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 259 TLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred eecccc-cccccccc-ccccCccCEEeccCccccccchh
Confidence 888887 47777775 77778888888888854444444
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.6e-08 Score=93.72 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=98.6
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC--CCCCCCCceeEEeccCcCccccccc-C-CCCCCcc
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE--GGLPCAKLRTLKIYDCKRLKALPKG-L-HNLSTLQ 587 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~-l-~~l~~L~ 587 (755)
..|+.|.+.+++....+...++.-.+|+.|+++.|..+++... .+.+++.|..|++++|...+..-.. + .--+.|.
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 5899999999988888888899999999999999998887543 3456999999999999876644211 1 1225777
Q ss_pred eeEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCccc-ccccccccCCCCCCCC
Q 035893 588 YLTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVS-FPLEDKRLGTALPLPA 666 (755)
Q Consensus 588 ~L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 666 (755)
.|+++||-..+. ....+ --...+|+|.+||+++| ..+.. .-. ++..++
T Consensus 290 ~LNlsG~rrnl~---------------------~sh~~--tL~~rcp~l~~LDLSD~-v~l~~~~~~-------~~~kf~ 338 (419)
T KOG2120|consen 290 QLNLSGYRRNLQ---------------------KSHLS--TLVRRCPNLVHLDLSDS-VMLKNDCFQ-------EFFKFN 338 (419)
T ss_pred hhhhhhhHhhhh---------------------hhHHH--HHHHhCCceeeeccccc-cccCchHHH-------HHHhcc
Confidence 888887722111 00000 01234555555555552 11111 111 113455
Q ss_pred ccceEecccCCCCcccc-ccccCCCCccEEeeCCC
Q 035893 667 SLTSLTIFSFPSLERLS-SSIVDLQNLTQLDLGDC 700 (755)
Q Consensus 667 ~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c 700 (755)
.|++|.++.|..+---. -.+.+.|+|.+|++-+|
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 66666666664432100 05667788888888887
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=7.4e-07 Score=95.81 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=77.6
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
+|+.|+++++. ...+|..+..+++|+.|++++| .+.+++......+.|+.|++++|. ...+|........|+++.++
T Consensus 141 nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 56666666653 3333334555666666666666 455555544445666666666665 44554443444456666666
Q ss_pred Cc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceE
Q 035893 593 GA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSL 671 (755)
Q Consensus 593 ~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 671 (755)
++ +.........+.++..+.+.+|+..... ..+..++.+++|++++ +.+..++. . ....+++.|
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~-----~~~~~l~~l~~L~~s~--n~i~~i~~-~-------~~~~~l~~L 282 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLP-----ESIGNLSNLETLDLSN--NQISSISS-L-------GSLTNLREL 282 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeeecc-----chhccccccceecccc--cccccccc-c-------cccCccCEE
Confidence 55 2333344555555666665555544321 2345555666666665 23333332 1 355666666
Q ss_pred ecccC
Q 035893 672 TIFSF 676 (755)
Q Consensus 672 ~l~~~ 676 (755)
++++.
T Consensus 283 ~~s~n 287 (394)
T COG4886 283 DLSGN 287 (394)
T ss_pred eccCc
Confidence 66663
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=4.8e-06 Score=62.16 Aligned_cols=56 Identities=27% Similarity=0.401 Sum_probs=28.8
Q ss_pred ccceEecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCc
Q 035893 667 SLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCP 724 (755)
Q Consensus 667 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 724 (755)
+|++|++++| .++.+|. .+..+++|++|++++| .++.+++..| +++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3445555542 4555544 4455555555555555 4555555444 4555555555553
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=1.5e-05 Score=59.53 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=24.3
Q ss_pred CcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc
Q 035893 537 SLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA 594 (755)
Q Consensus 537 ~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~ 594 (755)
+|++|++++| .+..++. .+..+++|++|++++|.....-+..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444 3333332 2233444444444444432222234445555555555544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=5e-07 Score=96.17 Aligned_cols=110 Identities=25% Similarity=0.218 Sum_probs=84.7
Q ss_pred cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCC
Q 035893 600 EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSL 679 (755)
Q Consensus 600 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 679 (755)
.....++.|+.|+++.|++.... .+..+++|++|||++| .+..+|... +.--.|..|.+++ |-+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN--~L~~vp~l~-------~~gc~L~~L~lrn-N~l 244 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYN--CLRHVPQLS-------MVGCKLQLLNLRN-NAL 244 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccc--hhccccccc-------hhhhhheeeeecc-cHH
Confidence 45566788999999999988764 3788999999999985 456666544 2233489999998 577
Q ss_pred ccccccccCCCCccEEeeCCCCCCCCCCCCC---CcccccceeecCCcchh
Q 035893 680 ERLSSSIVDLQNLTQLDLGDCPKLKYFPEKG---LPSSLLRLNIAGCPLIE 727 (755)
Q Consensus 680 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~ 727 (755)
+.+- ++.++.+|+.||+++| -+....+.. .+.+|.+|.+.|||.-.
T Consensus 245 ~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 245 TTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred Hhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7776 7889999999999999 566554422 27889999999999644
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.72 E-value=4.3e-05 Score=86.23 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=66.1
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
.++.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888887777778888888888888888886666788777888888888888888777888877888888888887
Q ss_pred Cc
Q 035893 593 GA 594 (755)
Q Consensus 593 ~~ 594 (755)
+|
T Consensus 499 ~N 500 (623)
T PLN03150 499 GN 500 (623)
T ss_pred CC
Confidence 76
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.59 E-value=2.3e-06 Score=88.97 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=134.4
Q ss_pred CCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEee
Q 035893 535 NTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKI 613 (755)
Q Consensus 535 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l 613 (755)
+.--...|++.| ....+|..+..|..|+.+.+..|. .+.+|..+.++..|..++++.+ +..++...+. --|+.|-+
T Consensus 74 ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LPLKVLIV 150 (722)
T ss_pred ccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhc-CcceeEEE
Confidence 444566788887 667788888888899999998887 6788888999999999999976 3333333332 35899999
Q ss_pred cCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCcc
Q 035893 614 EGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLT 693 (755)
Q Consensus 614 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 693 (755)
++|+++..+. .++.+..|..|+.+. +.+..+|... ..+.+|+.|.+.. +.+..+|+.+. .-.|.
T Consensus 151 sNNkl~~lp~-----~ig~~~tl~~ld~s~--nei~slpsql-------~~l~slr~l~vrR-n~l~~lp~El~-~LpLi 214 (722)
T KOG0532|consen 151 SNNKLTSLPE-----EIGLLPTLAHLDVSK--NEIQSLPSQL-------GYLTSLRDLNVRR-NHLEDLPEELC-SLPLI 214 (722)
T ss_pred ecCccccCCc-----ccccchhHHHhhhhh--hhhhhchHHh-------hhHHHHHHHHHhh-hhhhhCCHHHh-CCcee
Confidence 9998776543 356888999999997 4566777655 5789999999999 68888998877 45588
Q ss_pred EEeeCCCCCCCCCCCCCC-cccccceeecCCcc
Q 035893 694 QLDLGDCPKLKYFPEKGL-PSSLLRLNIAGCPL 725 (755)
Q Consensus 694 ~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c~~ 725 (755)
.||++.| ++..||...- ...|++|.+.+||.
T Consensus 215 ~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 215 RLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eeecccC-ceeecchhhhhhhhheeeeeccCCC
Confidence 8999988 8999998533 88999999999985
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=2.3e-05 Score=87.05 Aligned_cols=111 Identities=26% Similarity=0.441 Sum_probs=48.9
Q ss_pred cccccEEEEecCCCCcc--cCccccCCCCccEEEEccC-CCcccCC-----CccCCCCccEEEeccCCCCcccchhhhcc
Q 035893 344 SCRLEYLKLSNCEGLVK--LPQSSLSLSSLREIEICKC-SSLVSFP-----EVALPSKLKKIQISYCDALKSLPEAWMCH 415 (755)
Q Consensus 344 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~l~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 415 (755)
++.|+.|.+.+|..+.. +-.....++.|+.|++++| ......+ ....+.+|+.|+++++..+.+.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35555555555544433 2223344455555555542 1111111 11124555555555555444443333333
Q ss_pred CCCCccEEEeccCCcccccccc---cCCCCCcEEeeeCCcCC
Q 035893 416 TNSSLEILIILYCNSLTYIAEV---QLPPSLKQLDIYNCDNI 454 (755)
Q Consensus 416 ~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~L 454 (755)
.+++|++|.+.+|..+++.... ...++|++|+++.|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 4555555555555544332211 22334555555555544
No 48
>PLN03150 hypothetical protein; Provisional
Probab=97.47 E-value=0.00024 Score=80.26 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=79.5
Q ss_pred cccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 346 RLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 346 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
.++.|++++|...+.+|..++.+++|+.|++++|.....+|. ++.+++|+.|++++|.....+|..+ ..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEE
Confidence 378899999988888888899999999999999976667774 6679999999999999777888776 7899999999
Q ss_pred eccCCcccccccc--cCCCCCcEEeeeCCc
Q 035893 425 ILYCNSLTYIAEV--QLPPSLKQLDIYNCD 452 (755)
Q Consensus 425 l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 452 (755)
+++|+.-..+|.. ....++..+++.++.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 9986433344432 112234555665554
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=4.2e-05 Score=73.31 Aligned_cols=87 Identities=8% Similarity=-0.033 Sum_probs=53.3
Q ss_pred hhhccccccEEEEecCCCCc--ccCccccCCCCccEEEEccCCCcccCCCc-cCCCCccEEEeccCCCCcccchhhhccC
Q 035893 340 LCELSCRLEYLKLSNCEGLV--KLPQSSLSLSSLREIEICKCSSLVSFPEV-ALPSKLKKIQISYCDALKSLPEAWMCHT 416 (755)
Q Consensus 340 ~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 416 (755)
+...++.++.+++.+|...+ ++..-+.++|.|+.|+|+.|+.-..+... ....+|++|.+.+....-.-...+. ..
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~ 144 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DD 144 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hc
Confidence 34445778888888876543 33334567888888888887655555444 3467788888877652211111111 55
Q ss_pred CCCccEEEecc
Q 035893 417 NSSLEILIILY 427 (755)
Q Consensus 417 ~~~L~~L~l~~ 427 (755)
+|.+++|+++.
T Consensus 145 lP~vtelHmS~ 155 (418)
T KOG2982|consen 145 LPKVTELHMSD 155 (418)
T ss_pred chhhhhhhhcc
Confidence 67777777776
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.41 E-value=3.6e-05 Score=82.91 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
.+|+.+++.+|...+. ...+..+++|+.|++++| .++.+. .+..++.|+.|++++|. ...+ ..+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNL-ISDI-SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheecccc-cccccc-chhhccchhhheeccCc-chhc-cCCccchhhhcccC
Confidence 3555555555533222 211344555666666655 344333 23334445555665555 2223 23344555555555
Q ss_pred CCc-CCCCccC-CCCCCceeeEeecCCcccc
Q 035893 592 GGA-LPSLEEE-DGLPTNLHFLKIEGNMEIW 620 (755)
Q Consensus 592 s~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~ 620 (755)
+++ +..+... ...+.+++.+++.+|.+..
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 555 1111111 2444555555555555433
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=5.7e-06 Score=88.41 Aligned_cols=105 Identities=25% Similarity=0.271 Sum_probs=78.6
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
+.|+.|++++|...+.- .+..++.|+.|||++| .+..+|..-..-..|+.|.+++|. ++.+ .++.++.+|+-||+
T Consensus 187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~-l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNA-LTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeecccH-HHhh-hhHHhhhhhhccch
Confidence 67999999999766543 5788999999999998 777787644433359999999998 5655 57889999999999
Q ss_pred CCc-CCCCc--cCCCCCCceeeEeecCCcccch
Q 035893 592 GGA-LPSLE--EEDGLPTNLHFLKIEGNMEIWK 621 (755)
Q Consensus 592 s~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~~ 621 (755)
+++ +-.-. .....+..|+.|++.+|++--.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 976 22221 3344566788888888875443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.37 E-value=0.0002 Score=48.81 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=32.0
Q ss_pred CccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 666 ASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 666 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
++|++|++++ +.++.+|+.+..+++|+.|++++| .++++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4678888888 588889877999999999999999 6777654
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.28 E-value=5e-05 Score=81.79 Aligned_cols=123 Identities=22% Similarity=0.220 Sum_probs=90.1
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
.++.+.+..+...+ +-..+..+++|+.+++.+| .+..+...+..+++|++|++++|.. +.+ ..+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeecccc-chhhcccchhhhhcchheecccccc-ccc-cchhhccchhhheec
Confidence 45556666654433 2334677999999999998 6666665467799999999999984 444 457778889999999
Q ss_pred Cc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEecc
Q 035893 593 GA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGC 644 (755)
Q Consensus 593 ~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (755)
+| |..+ ..+..+.+|+.+++++|.+...... . +..+.+++.+++.+|
T Consensus 149 ~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 149 GNLISDI-SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGN 196 (414)
T ss_pred cCcchhc-cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCC
Confidence 98 2222 3344489999999999987765331 0 377889999999984
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.08 E-value=0.0001 Score=81.83 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=81.0
Q ss_pred ccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecC-CCCcccC----ccccCCCCccEEEEccCCCcc
Q 035893 309 NNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNC-EGLVKLP----QSSLSLSSLREIEICKCSSLV 383 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~~l~ 383 (755)
..++.|+.+.+.+|..+.... .......+++|+.|++++| ......+ .....+++|+.|+++.|..++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 346788888888887777532 3344556689999999873 3322222 234556889999999887655
Q ss_pred cCC--Ccc-CCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccc
Q 035893 384 SFP--EVA-LPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTY 433 (755)
Q Consensus 384 ~~~--~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 433 (755)
+.. .++ .+++|++|.+.+|..+++.....+...+++|++|++++|..+++
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 443 122 27899999988888655555444447889999999999988754
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00087 Score=64.57 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=116.3
Q ss_pred ccCCCCCcceEEEccCccc--hhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcc-cccccCCCC
Q 035893 507 VGNLPPSLKSLRVNFCSKL--ELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLK-ALPKGLHNL 583 (755)
Q Consensus 507 ~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~l~~l 583 (755)
++...+.++.+++.+|... .++...+.++|.|+.|+++.|+.-..+...-....+|++|.+.|-...= .....+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 3444468899999998765 3555667789999999999986443333222456789999998764211 122345677
Q ss_pred CCcceeEeCCc-CCCCc----cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCccccccccccc
Q 035893 584 STLQYLTIGGA-LPSLE----EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRL 658 (755)
Q Consensus 584 ~~L~~L~ls~~-~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 658 (755)
|.+++|++|.+ +..+. .....-+.+++++.-.|......-.. ..-.-+|++..+.+.+|- +.....+
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~P--lK~~s~e---- 217 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGP--LKTESSE---- 217 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCc--ccchhhc----
Confidence 88888888855 22221 12223345666666666543322211 223446777777777731 1111111
Q ss_pred CCCCCCCCccceEecccCCCCccccc--cccCCCCccEEeeCCCCCCCCCCC
Q 035893 659 GTALPLPASLTSLTIFSFPSLERLSS--SIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 659 ~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
+....++.+--|.++. +++.++.. .+..|+.|..|.++++|....+..
T Consensus 218 -k~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 218 -KGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred -ccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 1123455566677776 46666554 778899999999999986665543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.93 E-value=0.00056 Score=77.16 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=65.0
Q ss_pred ccCCCCCcceEEEccCccc-hhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcc-cccccCCCCC
Q 035893 507 VGNLPPSLKSLRVNFCSKL-ELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLK-ALPKGLHNLS 584 (755)
Q Consensus 507 ~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~l~~l~ 584 (755)
.|...|+|+.|.+++-... +++.....++|+|..||+|++ +++.+ .++..+++|++|.+.+-+... ..-..+.+++
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 4555577888877764432 334445567888888888876 55555 456667777777776654332 1112456677
Q ss_pred CcceeEeCCcCCCCc---------cCCCCCCceeeEeecCCcccch
Q 035893 585 TLQYLTIGGALPSLE---------EEDGLPTNLHFLKIEGNMEIWK 621 (755)
Q Consensus 585 ~L~~L~ls~~~~~l~---------~~~~~~~~L~~L~l~~~~~~~~ 621 (755)
.|+.||+|.. .... .-...+|+|+.||.++..+...
T Consensus 221 ~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 221 KLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred CCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7777777743 1111 2233455666666665554443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.002 Score=58.77 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCcc
Q 035893 602 DGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLER 681 (755)
Q Consensus 602 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 681 (755)
.....+...+|+++|.+... ..|.+++.|.+|.+.+ +.++.+.... ...++.|.+|.+.+ +.+..
T Consensus 38 g~~~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~n--NrIt~I~p~L------~~~~p~l~~L~Ltn-Nsi~~ 102 (233)
T KOG1644|consen 38 GATLDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNN--NRITRIDPDL------DTFLPNLKTLILTN-NSIQE 102 (233)
T ss_pred cccccccceecccccchhhc------ccCCCccccceEEecC--Ccceeeccch------hhhccccceEEecC-cchhh
Confidence 33445677778888876654 3467788888888876 3455554322 24677888888888 46555
Q ss_pred ccc--cccCCCCccEEeeCCCCCCCCCCCCC---C--cccccceeecCCcchh-----Hhh-ccCCCccccccc
Q 035893 682 LSS--SIVDLQNLTQLDLGDCPKLKYFPEKG---L--PSSLLRLNIAGCPLIE-----EKC-RKDGGQYWDLLT 742 (755)
Q Consensus 682 l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~---~--~~~L~~L~i~~c~~l~-----~~~-~~~~~~~~~~~~ 742 (755)
+.. .+..||.|++|.+-+|+ +..-...- + +++|+.||+.+-..-+ ..+ .+..++.|.+++
T Consensus 103 l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f~~k~~k~~~~~i~ 175 (233)
T KOG1644|consen 103 LGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFFKGKKGKKAAKSIN 175 (233)
T ss_pred hhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHhccccchhhhhhhh
Confidence 543 67889999999999994 44443321 1 7899999988765321 122 345556676665
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.81 E-value=0.00074 Score=76.16 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=37.2
Q ss_pred ccccccEEEEecCCCCc-ccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCccc-chhhhccCCCCc
Q 035893 343 LSCRLEYLKLSNCEGLV-KLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSL-PEAWMCHTNSSL 420 (755)
Q Consensus 343 ~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L 420 (755)
.+|+|++|.+.+-.... ++.....++|+|..|||+++ .+..+...+.+++|+.|.+.+-...... -..+ -.+++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L--F~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLIDL--FNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHHH--hcccCC
Confidence 34555555555532211 12223344555555555555 3444444445555555555544322211 1111 245555
Q ss_pred cEEEecc
Q 035893 421 EILIILY 427 (755)
Q Consensus 421 ~~L~l~~ 427 (755)
+.||++.
T Consensus 223 ~vLDIS~ 229 (699)
T KOG3665|consen 223 RVLDISR 229 (699)
T ss_pred Ceeeccc
Confidence 5555554
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.77 E-value=0.0019 Score=43.94 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=24.7
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCcc
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSF 552 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 552 (755)
+|++|++++|... .+|..+.++++|+.|++++| .++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCC-CCCCC
Confidence 6777777777544 45555777788888888777 34444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.39 E-value=0.0044 Score=56.57 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCC-CCCceeEEeccCcCccccc--ccCCCCCCcce
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLP-CAKLRTLKIYDCKRLKALP--KGLHNLSTLQY 588 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~-l~~L~~L~l~~~~~l~~~~--~~l~~l~~L~~ 588 (755)
.+...+|+++|..... + .+.+++.|.+|.+.+| .+..+...+.. +++|+.|.+.+|.. ..+. ..+..||+|++
T Consensus 42 d~~d~iDLtdNdl~~l-~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-D-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhc-c-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccce
Confidence 5677778887754332 2 2556777888888877 55555554544 56788888877763 2221 23444555555
Q ss_pred eEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 589 LTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 589 L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
|.+-+ |+.....-+. -.++..+|+|+.||+..
T Consensus 118 Ltll~----------------------Npv~~k~~YR-~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLG----------------------NPVEHKKNYR-LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecC----------------------CchhcccCce-eEEEEecCcceEeehhh
Confidence 55544 4433221111 04567788888888875
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.90 E-value=0.00074 Score=57.37 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=32.4
Q ss_pred CcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 629 GFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 629 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
.+....+|...++++ +.+..||.... ..++.++.|.+.+ +.+..+|+.+..++.|+.|+++.|+
T Consensus 48 ~l~~~~el~~i~ls~--N~fk~fp~kft------~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 48 MLSKGYELTKISLSD--NGFKKFPKKFT------IKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred HHhCCceEEEEeccc--chhhhCCHHHh------hccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc
Confidence 344445555555554 23444443321 2344555555555 4555555555555555555555553
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.48 E-value=0.0048 Score=58.86 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=19.1
Q ss_pred cCCCCCcCeEEEecCCCCCccCC----CCCCCCCceeEEeccCc
Q 035893 532 LDNNTSLETISISNCENLVSFPE----GGLPCAKLRTLKIYDCK 571 (755)
Q Consensus 532 l~~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~ 571 (755)
+..||.|+..++|+|-.-..+|. .+.+-+.|++|.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34455555555555543333332 22334455555555554
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.00 E-value=0.0081 Score=57.39 Aligned_cols=84 Identities=19% Similarity=0.108 Sum_probs=39.4
Q ss_pred CCCceeEEeccC--cCcccccccCCCCCCcceeEeCCc-CCCCc--cCCCCCCceeeEeecCCcccchhhhhcCcCcCCC
Q 035893 559 CAKLRTLKIYDC--KRLKALPKGLHNLSTLQYLTIGGA-LPSLE--EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRF 633 (755)
Q Consensus 559 l~~L~~L~l~~~--~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l 633 (755)
+++|++|.++.| .....++.....+|+|++++++++ |.-+. .....+++|..|++.+|..+...-+. -.++.-+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyr-e~vf~ll 142 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYR-EKVFLLL 142 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHH-HHHHHHh
Confidence 445555555555 323333333344455555555544 11111 23334455556666666544321111 0345667
Q ss_pred CCccEEEEec
Q 035893 634 SSLRELIIRG 643 (755)
Q Consensus 634 ~~L~~L~l~~ 643 (755)
++|++|+-.+
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 7777777665
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.88 E-value=0.0014 Score=55.68 Aligned_cols=111 Identities=18% Similarity=0.093 Sum_probs=69.3
Q ss_pred CceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCcccccc
Q 035893 606 TNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSS 685 (755)
Q Consensus 606 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 685 (755)
..|+..++++|.+-..+. ..-...+..++|++++ +.+..+|.|. ..++.|+.|.++.+ .+...|..
T Consensus 53 ~el~~i~ls~N~fk~fp~----kft~kf~t~t~lNl~~--neisdvPeE~-------Aam~aLr~lNl~~N-~l~~~p~v 118 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPK----KFTIKFPTATTLNLAN--NEISDVPEEL-------AAMPALRSLNLRFN-PLNAEPRV 118 (177)
T ss_pred ceEEEEecccchhhhCCH----HHhhccchhhhhhcch--hhhhhchHHH-------hhhHHhhhcccccC-ccccchHH
Confidence 456666777765543332 1223455777888887 4677777765 57788888888884 55556665
Q ss_pred ccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCcchhHhhc
Q 035893 686 IVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPLIEEKCR 731 (755)
Q Consensus 686 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~ 731 (755)
+..+.++-.|+.-++ ....++...+-++++-+.--|+.-+.+-|.
T Consensus 119 i~~L~~l~~Lds~~n-a~~eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPEN-ARAEIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred HHHHHhHHHhcCCCC-ccccCcHHHhccccHHHHHhcCCcccccCc
Confidence 666888888888888 566676654434444443335555554444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.52 E-value=0.28 Score=42.82 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=4.8
Q ss_pred cCCCCCccEEEE
Q 035893 630 FHRFSSLRELII 641 (755)
Q Consensus 630 l~~l~~L~~L~l 641 (755)
+..+++|+.+++
T Consensus 77 F~~~~~l~~i~~ 88 (129)
T PF13306_consen 77 FSNCTNLKNIDI 88 (129)
T ss_dssp TTT-TTECEEEE
T ss_pred cccccccccccc
Confidence 334444444444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.0027 Score=60.74 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcc
Q 035893 367 SLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSL 431 (755)
Q Consensus 367 ~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 431 (755)
.++.|+.|.|+-| .+.++.++..+++|++|++..|. +.++.+.....++|+|+.|.+..++..
T Consensus 39 kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcc
Confidence 4455555555554 34444444455555555555554 222222211145555555555544433
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.05 E-value=0.029 Score=53.77 Aligned_cols=188 Identities=18% Similarity=0.100 Sum_probs=113.8
Q ss_pred hcCCCCCcCeEEEecCCCCCc----cCCCCCCCCCceeEEeccCcCcc---cc-------cccCCCCCCcceeEeCCcCC
Q 035893 531 RLDNNTSLETISISNCENLVS----FPEGGLPCAKLRTLKIYDCKRLK---AL-------PKGLHNLSTLQYLTIGGALP 596 (755)
Q Consensus 531 ~l~~l~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~~l~---~~-------~~~l~~l~~L~~L~ls~~~~ 596 (755)
.+..+..+.++++|+|..-++ ++..+.+-.+|+..++++-..-+ .+ ...+..||.|+..++|++--
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 345588999999999965443 45556667788888887654211 11 12467889999999997711
Q ss_pred CC--c----cCCCCCCceeeEeecCCcccchhhhhcCcCc---------CCCCCccEEEEeccCCCcccccccccccCCC
Q 035893 597 SL--E----EEDGLPTNLHFLKIEGNMEIWKSMIERGRGF---------HRFSSLRELIIRGCDDDMVSFPLEDKRLGTA 661 (755)
Q Consensus 597 ~l--~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l---------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (755)
.. + .....-+.|++|.+++|......-..++..+ .+-|.|++..... +.++..+.+.. ...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr--NRlengs~~~~--a~~ 180 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR--NRLENGSKELS--AAL 180 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc--chhccCcHHHH--HHH
Confidence 11 1 3345567899999999976554433333222 3446777777665 34554443321 011
Q ss_pred CCCCCccceEecccCCCCcc-----c-cccccCCCCccEEeeCCCCCCCCCCCC----CC--cccccceeecCCc
Q 035893 662 LPLPASLTSLTIFSFPSLER-----L-SSSIVDLQNLTQLDLGDCPKLKYFPEK----GL--PSSLLRLNIAGCP 724 (755)
Q Consensus 662 ~~~~~~L~~L~l~~~~~l~~-----l-~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~--~~~L~~L~i~~c~ 724 (755)
+..-..|+++.+..+ .++. + -.++..+.+|+.|++.+|. .+..... .+ .+.|..|.+.+|-
T Consensus 181 l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 181 LESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh
Confidence 223357788887774 3332 1 1166788899999999884 2322211 11 3568888888884
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.91 E-value=0.29 Score=42.67 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=21.3
Q ss_pred CCCCCCcceeEeCCcCCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 580 LHNLSTLQYLTIGGALPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 580 l~~l~~L~~L~ls~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+.++++++.+.+.+.+..+. ..+..+++|+.+++..+ ...... ..+.+. .|+.+.+..
T Consensus 54 F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~----~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 54 FSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEIGS----SSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEEHT----TTTTT--T--EEE-TT
T ss_pred eecccccccccccccccccccccccccccccccccCcc-ccEEch----hhhcCC-CceEEEECC
Confidence 34444455555543322222 23444556666666443 211111 335554 666665543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.90 E-value=0.034 Score=53.29 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=45.2
Q ss_pred ccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccc---cccCCC
Q 035893 365 SLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIA---EVQLPP 441 (755)
Q Consensus 365 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~ 441 (755)
.-.+..|+.|.+.++ .++++..+-.+++|++|.+++|.........+.+..+|+|+++++++ |++..+. ...-..
T Consensus 39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhc
Confidence 334455566665555 34445445556777777777773222222222225567777777777 4554332 223334
Q ss_pred CCcEEeeeCCc
Q 035893 442 SLKQLDIYNCD 452 (755)
Q Consensus 442 ~L~~L~l~~~~ 452 (755)
+|..|++.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 45555555554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.0048 Score=59.10 Aligned_cols=98 Identities=18% Similarity=0.113 Sum_probs=58.6
Q ss_pred CceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-
Q 035893 606 TNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS- 684 (755)
Q Consensus 606 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 684 (755)
.+.+.|+.-+|.+..... ...++.|+.|.|+- +.+..+... ..+++|++|+|.. +.+.++.+
T Consensus 19 ~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSv--NkIssL~pl--------~rCtrLkElYLRk-N~I~sldEL 81 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSV--NKISSLAPL--------QRCTRLKELYLRK-NCIESLDEL 81 (388)
T ss_pred HHhhhhcccCCCccHHHH------HHhcccceeEEeec--cccccchhH--------HHHHHHHHHHHHh-cccccHHHH
Confidence 455666666666655433 35677777777775 233333321 2567777777776 45666555
Q ss_pred -cccCCCCccEEeeCCCCCCCCCCCC----C--Ccccccceee
Q 035893 685 -SIVDLQNLTQLDLGDCPKLKYFPEK----G--LPSSLLRLNI 720 (755)
Q Consensus 685 -~~~~~~~L~~L~l~~c~~l~~l~~~----~--~~~~L~~L~i 720 (755)
.+.++|+|+.|.+..|+=.+.-+.. . .+|+|++||=
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 6677777777777777654444331 1 1667777763
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.13 E-value=0.11 Score=27.06 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=8.3
Q ss_pred CCccEEeeCCCCCCCCCC
Q 035893 690 QNLTQLDLGDCPKLKYFP 707 (755)
Q Consensus 690 ~~L~~L~l~~c~~l~~l~ 707 (755)
++|++|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456677777773 55544
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=0.039 Score=50.67 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=47.3
Q ss_pred CceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCc-----cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCC
Q 035893 561 KLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLE-----EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSS 635 (755)
Q Consensus 561 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 635 (755)
.++.++-+++.....--..+.++++++.|.+.+| ..+. ...+..++|+.|++++|..+++... ..+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhh
Confidence 4555555555544443345566667777777766 4443 2334567777777777766555433 34666777
Q ss_pred ccEEEEec
Q 035893 636 LRELIIRG 643 (755)
Q Consensus 636 L~~L~l~~ 643 (755)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 77777765
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=0.025 Score=51.91 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=42.7
Q ss_pred ccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC--Ccc-CCCCccEEEeccCCCCcccchhhhccCCCCccEE
Q 035893 347 LEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVA-LPSKLKKIQISYCDALKSLPEAWMCHTNSSLEIL 423 (755)
Q Consensus 347 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 423 (755)
++.++-+++....+-.+.+.+++.++.|.+.+|..+.+.. .++ ..++|+.|++++|+.+++.....+ ..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHH
Confidence 4455555554444444455556666666666665444321 111 256666666666666555544433 455666666
Q ss_pred EeccC
Q 035893 424 IILYC 428 (755)
Q Consensus 424 ~l~~c 428 (755)
.+.+.
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 55543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.37 E-value=0.25 Score=27.71 Aligned_cols=9 Identities=44% Similarity=0.505 Sum_probs=4.0
Q ss_pred ccEEeeCCC
Q 035893 692 LTQLDLGDC 700 (755)
Q Consensus 692 L~~L~l~~c 700 (755)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.11 E-value=0.72 Score=27.04 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=14.9
Q ss_pred CCCccEEeeCCCCCCCCCCCCC
Q 035893 689 LQNLTQLDLGDCPKLKYFPEKG 710 (755)
Q Consensus 689 ~~~L~~L~l~~c~~l~~l~~~~ 710 (755)
+++|++|++++| .++.+|+..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467778888888 677777643
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.11 E-value=0.72 Score=27.04 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=14.9
Q ss_pred CCCccEEeeCCCCCCCCCCCCC
Q 035893 689 LQNLTQLDLGDCPKLKYFPEKG 710 (755)
Q Consensus 689 ~~~L~~L~l~~c~~l~~l~~~~ 710 (755)
+++|++|++++| .++.+|+..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 467778888888 677777643
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.39 E-value=1 Score=26.48 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=8.4
Q ss_pred CCccEEeeCCCCCCC
Q 035893 690 QNLTQLDLGDCPKLK 704 (755)
Q Consensus 690 ~~L~~L~l~~c~~l~ 704 (755)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455666666665444
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.70 E-value=0.069 Score=57.82 Aligned_cols=183 Identities=20% Similarity=0.143 Sum_probs=91.0
Q ss_pred cceEEEccCccchh----hhhhcCCCCCcCeEEEecCCCCCc----cCCCCCCC-CCceeEEeccCcCcccc----cccC
Q 035893 514 LKSLRVNFCSKLEL----IAERLDNNTSLETISISNCENLVS----FPEGGLPC-AKLRTLKIYDCKRLKAL----PKGL 580 (755)
Q Consensus 514 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~----~~~~~~~l-~~L~~L~l~~~~~l~~~----~~~l 580 (755)
+..+.+.+|..... +...+...+.|..|++++|..-.. +...+... ..++.|++..|.....- ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666655432 234455677777777777743321 11122222 45666666666543322 2344
Q ss_pred CCCCCcceeEeCCcCCCCc-------cC----CCCCCceeeEeecCCcccchhhhhcCcCcCCCCC-ccEEEEeccCCCc
Q 035893 581 HNLSTLQYLTIGGALPSLE-------EE----DGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSS-LRELIIRGCDDDM 648 (755)
Q Consensus 581 ~~l~~L~~L~ls~~~~~l~-------~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~ 648 (755)
.....++.++++.| +... .. +....++++|++++|.++..........+...+. +++|++..|....
T Consensus 169 ~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44667777777765 2222 11 1234567777777777665443333344555555 6666666532221
Q ss_pred ccccccccccCCCCCCC-CccceEecccCCCCcc----ccccccCCCCccEEeeCCCC
Q 035893 649 VSFPLEDKRLGTALPLP-ASLTSLTIFSFPSLER----LSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 649 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~----l~~~~~~~~~L~~L~l~~c~ 701 (755)
..+. .....+..+ ..+++++++.|+.... +...+..+++++++.+++|+
T Consensus 248 ~g~~----~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 248 VGVE----KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHH----HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 1000 000111223 4556666666543222 33355566666666666664
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.43 E-value=5.4 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=14.0
Q ss_pred CCccEEeeCCCCCCCCCCC
Q 035893 690 QNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 690 ~~L~~L~l~~c~~l~~l~~ 708 (755)
++|+.|++++| +++.+|+
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 46788888888 6788876
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=51.78 E-value=8.6 Score=21.82 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=9.6
Q ss_pred CceeeEeecCCcccchh
Q 035893 606 TNLHFLKIEGNMEIWKS 622 (755)
Q Consensus 606 ~~L~~L~l~~~~~~~~~ 622 (755)
++|++|++++|.+....
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 56777777777755443
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=42.66 E-value=22 Score=20.96 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=10.5
Q ss_pred CCccEEeeCCCCCCCCC
Q 035893 690 QNLTQLDLGDCPKLKYF 706 (755)
Q Consensus 690 ~~L~~L~l~~c~~l~~l 706 (755)
++|+.|++++| +++.+
T Consensus 2 ~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 2 TNLEELDLSQN-KIKKI 17 (26)
T ss_pred CccCEEECCCC-cccee
Confidence 56777777777 45554
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=39.63 E-value=0.8 Score=49.75 Aligned_cols=184 Identities=22% Similarity=0.145 Sum_probs=106.8
Q ss_pred CcCeEEEecCCCCCc----cCCCCCCCCCceeEEeccCcCcccc----cccCCCC-CCcceeEeCCcCCCCc------cC
Q 035893 537 SLETISISNCENLVS----FPEGGLPCAKLRTLKIYDCKRLKAL----PKGLHNL-STLQYLTIGGALPSLE------EE 601 (755)
Q Consensus 537 ~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~~l~~~----~~~l~~l-~~L~~L~ls~~~~~l~------~~ 601 (755)
.+..+.+.+|..... +...+...+.|+.|++++|.....- ...+... ..++.|++..|...-. ..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 378888888854432 2334455788999999998854211 1123332 5667777776622221 22
Q ss_pred CCCCCceeeEeecCCcccchhhhhcCcCcC----CCCCccEEEEeccCCCcccccccccccCCCCCCCCc-cceEecccC
Q 035893 602 DGLPTNLHFLKIEGNMEIWKSMIERGRGFH----RFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPAS-LTSLTIFSF 676 (755)
Q Consensus 602 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 676 (755)
....+.++.++++.|.+.......+...+. ...++++|.+++|.......... ...+...++ +..|++.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l----~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL----DEVLASGESLLRELDLASN 243 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH----HHHHhccchhhHHHHHHhc
Confidence 333678889999999876544433334455 37788889988854321111100 011223444 666888774
Q ss_pred CCCcc-----ccccccCC-CCccEEeeCCCCCCCCCCCCCC------cccccceeecCCcch
Q 035893 677 PSLER-----LSSSIVDL-QNLTQLDLGDCPKLKYFPEKGL------PSSLLRLNIAGCPLI 726 (755)
Q Consensus 677 ~~l~~-----l~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~------~~~L~~L~i~~c~~l 726 (755)
.+.. +.+.+..+ ..+++++++.|+ ++.-....+ .+.++.+.++.++..
T Consensus 244 -~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 244 -KLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred -CcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3332 33355555 788899999994 443322111 457888888888754
No 83
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=39.27 E-value=42 Score=22.59 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=19.4
Q ss_pred CCccEEeeCCCCCCCCCCCCCCcccccceeecC
Q 035893 690 QNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAG 722 (755)
Q Consensus 690 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 722 (755)
+++++|.+.++ --..+....+|+++++|.+..
T Consensus 12 ~~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSS-FNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCc-cCccCCCCccCCCceEEEeeC
Confidence 56677777444 224455555677788777653
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.09 E-value=19 Score=38.92 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=46.0
Q ss_pred CCcceEEEccCccc--hhhhhhcCCCCCcCeEEEecCCCCCccCCCCC--CCCCceeEEeccCcCcccccc-------cC
Q 035893 512 PSLKSLRVNFCSKL--ELIAERLDNNTSLETISISNCENLVSFPEGGL--PCAKLRTLKIYDCKRLKALPK-------GL 580 (755)
Q Consensus 512 ~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~-------~l 580 (755)
+.+..+++++|+.. +.+.......|+|+.|+|++|....+....+. ....|++|.+.||+..+.... .-
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~ 297 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIR 297 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHH
Confidence 56777778877543 23333334578888888888732222111122 145688888888887665532 12
Q ss_pred CCCCCcceeE
Q 035893 581 HNLSTLQYLT 590 (755)
Q Consensus 581 ~~l~~L~~L~ 590 (755)
..+|+|..||
T Consensus 298 ~~FPKL~~LD 307 (585)
T KOG3763|consen 298 ELFPKLLRLD 307 (585)
T ss_pred Hhcchheeec
Confidence 3556666554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.38 E-value=42 Score=36.49 Aligned_cols=9 Identities=22% Similarity=-0.178 Sum_probs=5.4
Q ss_pred CCCCccEEE
Q 035893 416 TNSSLEILI 424 (755)
Q Consensus 416 ~~~~L~~L~ 424 (755)
.+|+|..||
T Consensus 299 ~FPKL~~LD 307 (585)
T KOG3763|consen 299 LFPKLLRLD 307 (585)
T ss_pred hcchheeec
Confidence 456666665
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.76 E-value=52 Score=19.57 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=10.3
Q ss_pred CceeeEeecCCcccch
Q 035893 606 TNLHFLKIEGNMEIWK 621 (755)
Q Consensus 606 ~~L~~L~l~~~~~~~~ 621 (755)
++|++|+|++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4567777777766543
Done!