Query 035893
Match_columns 755
No_of_seqs 324 out of 3565
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-45 6.2E-50 427.8 27.4 630 5-748 69-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 3E-40 1E-44 383.9 30.3 564 96-725 71-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-36 4.2E-41 350.7 36.5 555 98-740 45-636 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-35 1E-39 339.2 36.6 538 62-705 44-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 9.3E-34 3.2E-38 322.2 38.9 506 102-726 33-560 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 6.7E-34 2.3E-38 323.4 36.3 202 512-726 350-558 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.1E-33 3.6E-38 321.7 28.2 505 40-702 35-559 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-32 4.5E-37 312.7 37.0 490 97-704 51-559 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-29 7.8E-34 295.6 41.0 515 108-727 10-561 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1E-29 3.5E-34 298.5 38.0 500 102-706 24-563 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-30 1.2E-34 289.1 30.2 189 512-724 310-508 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 8.8E-30 3E-34 287.5 30.1 197 512-725 325-530 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 7.2E-29 2.5E-33 280.0 33.0 182 513-708 348-536 (570)
14 4eco_A Uncharacterized protein 100.0 1.9E-29 6.4E-34 286.3 25.9 337 309-727 270-633 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 9.1E-29 3.1E-33 275.5 27.3 194 513-725 277-480 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-28 1.3E-32 272.6 30.6 168 512-702 334-509 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 4.8E-28 1.6E-32 278.9 28.7 327 309-727 512-873 (876)
18 4eco_A Uncharacterized protein 100.0 1.9E-27 6.4E-32 269.9 23.8 312 345-726 249-600 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-26 8.8E-31 262.8 32.9 496 102-726 52-580 (635)
20 1jl5_A Outer protein YOPM; leu 100.0 1.8E-27 6.3E-32 257.8 21.5 297 345-724 131-427 (454)
21 2z7x_B TOLL-like receptor 1, v 100.0 7.4E-27 2.5E-31 260.0 25.3 126 512-643 348-477 (520)
22 4ecn_A Leucine-rich repeat pro 99.9 3.9E-26 1.3E-30 263.0 30.2 311 345-725 491-839 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.1E-26 2.1E-30 254.8 29.5 101 103-223 32-134 (562)
24 1jl5_A Outer protein YOPM; leu 99.9 7.6E-27 2.6E-31 253.0 19.2 414 102-701 11-427 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-25 1.3E-29 248.4 27.1 125 102-243 52-181 (562)
26 4g8a_A TOLL-like receptor 4; l 99.9 5.7E-25 2E-29 251.6 29.0 128 512-643 445-576 (635)
27 3v47_A TOLL-like receptor 5B a 99.9 7.5E-25 2.6E-29 239.6 25.2 258 345-643 129-404 (455)
28 4fmz_A Internalin; leucine ric 99.9 2.6E-24 8.8E-29 226.3 24.6 300 345-724 44-344 (347)
29 1o6v_A Internalin A; bacterial 99.9 5.3E-24 1.8E-28 233.0 27.9 327 309-708 65-392 (466)
30 1o6v_A Internalin A; bacterial 99.9 3.7E-23 1.3E-27 226.3 28.3 251 102-450 46-296 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 9.9E-24 3.4E-28 228.7 23.4 127 538-708 266-392 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 8.5E-24 2.9E-28 231.2 22.5 344 345-725 30-407 (455)
33 3bz5_A Internalin-J, INLJ; leu 99.9 5.1E-23 1.8E-27 223.1 25.6 80 345-435 170-249 (457)
34 2id5_A Lingo-1, leucine rich r 99.9 6.6E-23 2.3E-27 225.4 24.0 294 345-701 32-331 (477)
35 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.9E-27 213.6 24.7 303 309-701 41-344 (347)
36 3o6n_A APL1; leucine-rich repe 99.9 3E-22 1E-26 213.9 23.0 168 534-726 184-352 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 5.2E-22 1.8E-26 218.2 24.4 294 312-678 32-332 (477)
38 3o6n_A APL1; leucine-rich repe 99.9 2.3E-21 7.9E-26 207.0 22.7 301 311-701 44-350 (390)
39 3oja_B Anopheles plasmodium-re 99.9 1.8E-21 6E-26 219.6 22.5 304 311-725 50-357 (597)
40 1xku_A Decorin; proteoglycan, 99.9 4E-20 1.4E-24 192.5 25.2 291 345-700 31-329 (330)
41 3oja_B Anopheles plasmodium-re 99.9 1.2E-20 4E-25 212.9 21.8 305 273-677 49-356 (597)
42 2ft3_A Biglycan; proteoglycan, 99.9 6E-20 2E-24 191.4 24.3 290 345-700 33-330 (332)
43 3ogk_B Coronatine-insensitive 99.8 1.7E-21 5.7E-26 220.7 9.9 275 309-644 217-523 (592)
44 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.6E-26 221.4 8.7 348 314-706 140-528 (592)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.8E-24 188.5 23.0 283 369-724 33-331 (332)
46 1xku_A Decorin; proteoglycan, 99.8 2.3E-19 7.9E-24 186.8 24.0 262 369-724 31-304 (330)
47 1ogq_A PGIP-2, polygalacturona 99.8 1.7E-20 5.8E-25 193.3 12.1 179 513-727 126-305 (313)
48 1ogq_A PGIP-2, polygalacturona 99.8 3.1E-20 1.1E-24 191.3 13.4 221 345-643 50-277 (313)
49 4fcg_A Uncharacterized protein 99.8 1.7E-19 5.9E-24 186.8 17.1 174 513-700 128-311 (328)
50 4fcg_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 183.9 17.8 227 344-643 80-310 (328)
51 2p1m_B Transport inhibitor res 99.8 1.6E-21 5.6E-26 220.9 -0.9 130 310-451 209-348 (594)
52 1z7x_W Ribonuclease inhibitor; 99.8 5.5E-21 1.9E-25 209.3 1.7 353 344-724 27-438 (461)
53 2p1m_B Transport inhibitor res 99.8 2.6E-20 8.8E-25 211.1 5.7 133 309-451 102-245 (594)
54 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-17 5.6E-22 185.2 27.2 256 345-702 40-296 (622)
55 2z80_A TOLL-like receptor 2, v 99.8 1.6E-18 5.4E-23 182.2 16.9 183 512-724 124-312 (353)
56 2z80_A TOLL-like receptor 2, v 99.8 2E-18 7E-23 181.4 16.9 225 345-643 52-286 (353)
57 3g06_A SSPH2 (leucine-rich rep 99.8 4.2E-17 1.4E-21 181.9 25.6 255 369-725 40-296 (622)
58 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-20 5.2E-25 205.8 -3.7 356 345-725 3-410 (461)
59 3zyj_A Leucine-rich repeat-con 99.7 7.2E-17 2.5E-21 174.9 23.2 194 513-724 89-290 (440)
60 3zyi_A Leucine-rich repeat-con 99.7 7.1E-17 2.4E-21 175.6 22.9 194 513-724 100-301 (452)
61 1ozn_A Reticulon 4 receptor; N 99.7 1.9E-17 6.4E-22 168.4 16.8 202 510-725 30-237 (285)
62 2z66_A Variable lymphocyte rec 99.7 2.8E-17 9.6E-22 169.0 18.1 155 513-701 102-259 (306)
63 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-18 3.8E-23 180.2 7.6 241 340-643 29-271 (317)
64 2z66_A Variable lymphocyte rec 99.7 1.1E-17 3.6E-22 172.2 14.7 128 512-643 126-257 (306)
65 3o53_A Protein LRIM1, AGAP0063 99.7 4.1E-19 1.4E-23 183.4 3.2 262 347-706 12-278 (317)
66 2xwt_C Thyrotropin receptor; s 99.7 3.6E-17 1.2E-21 161.5 16.0 200 510-726 29-239 (239)
67 3zyj_A Leucine-rich repeat-con 99.7 1.8E-16 6.1E-21 171.8 22.9 151 512-676 136-289 (440)
68 3zyi_A Leucine-rich repeat-con 99.7 7.9E-17 2.7E-21 175.2 19.3 110 345-458 75-188 (452)
69 1ozn_A Reticulon 4 receptor; N 99.7 7.8E-17 2.7E-21 163.8 17.2 178 512-702 56-237 (285)
70 3oja_A Leucine-rich immune mol 99.7 2.1E-17 7.1E-22 180.8 12.0 244 336-642 25-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.7 2E-16 6.8E-21 159.9 15.4 201 510-724 26-235 (276)
72 1wwl_A Monocyte differentiatio 99.7 2.7E-17 9.4E-22 169.3 5.0 57 664-724 251-307 (312)
73 2o6q_A Variable lymphocyte rec 99.7 2.5E-15 8.5E-20 151.2 19.0 177 511-701 36-216 (270)
74 1p9a_G Platelet glycoprotein I 99.7 2.4E-15 8.2E-20 152.6 18.2 176 510-701 29-206 (290)
75 1p9a_G Platelet glycoprotein I 99.7 1.2E-15 4.2E-20 154.7 15.8 195 512-725 10-207 (290)
76 3oja_A Leucine-rich immune mol 99.6 1.9E-16 6.5E-21 173.1 9.8 75 367-450 32-108 (487)
77 1wwl_A Monocyte differentiatio 99.6 5.5E-16 1.9E-20 159.5 12.4 173 512-701 121-307 (312)
78 2xwt_C Thyrotropin receptor; s 99.6 3.4E-15 1.2E-19 147.2 16.6 33 666-701 205-237 (239)
79 2z62_A TOLL-like receptor 4, v 99.6 7E-15 2.4E-19 148.5 16.9 177 512-702 52-236 (276)
80 2o6q_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 146.6 18.1 195 513-725 17-217 (270)
81 4glp_A Monocyte differentiatio 99.6 2.4E-15 8.2E-20 154.7 13.5 202 512-725 91-306 (310)
82 1h6u_A Internalin H; cell adhe 99.6 5.9E-15 2E-19 151.3 14.5 171 512-708 63-234 (308)
83 4ay9_X Follicle-stimulating ho 99.6 3.4E-14 1.2E-18 148.7 19.4 82 349-435 13-96 (350)
84 3rfs_A Internalin B, repeat mo 99.6 1.4E-14 4.8E-19 145.7 15.2 106 512-623 133-239 (272)
85 4glp_A Monocyte differentiatio 99.6 5.8E-14 2E-18 144.3 18.0 83 345-429 91-180 (310)
86 3rfs_A Internalin B, repeat mo 99.6 3E-14 1E-18 143.3 15.1 126 513-643 86-214 (272)
87 2ast_B S-phase kinase-associat 99.6 3.3E-15 1.1E-19 155.8 7.4 203 512-731 93-310 (336)
88 3m19_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 140.7 14.1 173 513-701 15-190 (251)
89 1h6u_A Internalin H; cell adhe 99.5 6E-14 2.1E-18 143.7 15.2 76 345-427 41-116 (308)
90 4ay9_X Follicle-stimulating ho 99.5 9E-14 3.1E-18 145.4 15.5 195 512-722 54-255 (350)
91 2ast_B S-phase kinase-associat 99.5 3.5E-15 1.2E-19 155.7 4.4 101 346-452 48-153 (336)
92 3m19_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 135.0 16.0 128 512-643 35-164 (251)
93 3goz_A Leucine-rich repeat-con 99.5 9.3E-15 3.2E-19 153.8 3.9 52 351-403 4-62 (362)
94 2ca6_A RAN GTPase-activating p 99.4 1.7E-14 5.8E-19 153.4 1.8 83 344-428 31-132 (386)
95 3goz_A Leucine-rich repeat-con 99.4 7.9E-15 2.7E-19 154.3 -2.5 201 513-724 52-295 (362)
96 1h6t_A Internalin B; cell adhe 99.4 7.9E-13 2.7E-17 134.1 11.7 171 512-708 46-217 (291)
97 1h6t_A Internalin B; cell adhe 99.4 1.1E-12 3.8E-17 133.1 12.5 169 533-725 43-212 (291)
98 3cvr_A Invasion plasmid antige 99.4 4.9E-12 1.7E-16 139.2 16.5 92 345-451 59-150 (571)
99 4ezg_A Putative uncharacterize 99.4 1.8E-12 6.2E-17 123.2 11.4 149 533-700 41-191 (197)
100 4ezg_A Putative uncharacterize 99.4 2.2E-12 7.4E-17 122.7 11.9 150 559-724 43-192 (197)
101 3cvr_A Invasion plasmid antige 99.4 3.5E-12 1.2E-16 140.4 15.1 162 512-702 80-242 (571)
102 2ca6_A RAN GTPase-activating p 99.4 4.1E-14 1.4E-18 150.4 -0.2 183 512-700 94-313 (386)
103 3e6j_A Variable lymphocyte rec 99.4 5.8E-12 2E-16 122.8 14.5 128 560-701 40-170 (229)
104 2o6s_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 122.4 12.6 161 511-691 27-190 (208)
105 1m9s_A Internalin B; cell inva 99.3 4.8E-12 1.6E-16 141.0 13.0 171 512-708 43-214 (605)
106 1m9s_A Internalin B; cell inva 99.3 6.1E-12 2.1E-16 140.1 12.8 148 512-683 65-213 (605)
107 1xeu_A Internalin C; cellular 99.3 3.1E-12 1.1E-16 127.5 8.7 169 513-708 20-189 (263)
108 2xot_A Amphoterin-induced prot 99.3 1.1E-11 3.7E-16 130.1 12.9 170 515-724 21-200 (361)
109 2v9t_B SLIT homolog 2 protein 99.3 2.1E-11 7.2E-16 117.9 13.4 63 630-701 100-163 (220)
110 2o6s_A Variable lymphocyte rec 99.2 2.5E-11 8.6E-16 116.5 11.2 154 535-708 27-183 (208)
111 2v70_A SLIT-2, SLIT homolog 2 99.2 4.9E-11 1.7E-15 115.3 12.8 146 540-701 15-164 (220)
112 2v9t_B SLIT homolog 2 protein 99.2 4.8E-11 1.7E-15 115.4 12.4 130 510-643 30-161 (220)
113 3e6j_A Variable lymphocyte rec 99.2 4.9E-11 1.7E-15 116.2 12.2 129 510-643 38-168 (229)
114 2ell_A Acidic leucine-rich nuc 99.2 2E-11 6.8E-16 112.8 8.5 133 508-643 20-156 (168)
115 1xeu_A Internalin C; cellular 99.2 1.9E-11 6.6E-16 121.8 8.3 166 345-572 19-184 (263)
116 2xot_A Amphoterin-induced prot 99.2 4.6E-11 1.6E-15 125.3 10.7 136 510-652 37-179 (361)
117 3sb4_A Hypothetical leucine ri 99.2 1.3E-10 4.4E-15 120.3 13.9 288 310-640 23-327 (329)
118 2v70_A SLIT-2, SLIT homolog 2 99.2 2.6E-10 8.8E-15 110.3 14.7 82 513-594 82-163 (220)
119 2je0_A Acidic leucine-rich nuc 99.1 1.9E-11 6.5E-16 110.3 4.8 110 509-620 14-127 (149)
120 2ell_A Acidic leucine-rich nuc 99.1 1E-10 3.5E-15 107.9 8.7 138 534-708 22-164 (168)
121 1dce_A Protein (RAB geranylger 99.1 9.7E-13 3.3E-17 145.7 -8.9 188 512-719 349-566 (567)
122 1dce_A Protein (RAB geranylger 99.1 2E-12 6.9E-17 143.1 -7.0 99 537-643 442-542 (567)
123 3sb4_A Hypothetical leucine ri 99.1 6.6E-10 2.3E-14 114.9 12.1 98 605-718 225-326 (329)
124 2je0_A Acidic leucine-rich nuc 99.0 3.7E-10 1.2E-14 101.8 7.6 58 535-594 16-74 (149)
125 4fdw_A Leucine rich hypothetic 99.0 4.1E-08 1.4E-12 103.6 22.1 170 531-742 221-395 (401)
126 2wfh_A SLIT homolog 2 protein 99.0 3E-09 1E-13 100.2 12.0 96 540-643 14-111 (193)
127 4fdw_A Leucine rich hypothetic 99.0 3.4E-08 1.2E-12 104.3 20.4 123 513-643 249-379 (401)
128 1w8a_A SLIT protein; signaling 98.9 2.2E-09 7.4E-14 101.3 9.9 121 515-643 11-135 (192)
129 2wfh_A SLIT homolog 2 protein 98.9 3.2E-09 1.1E-13 100.1 9.9 81 512-594 31-112 (193)
130 1a9n_A U2A', U2A'; complex (nu 98.9 8.1E-10 2.8E-14 102.7 5.0 128 512-644 19-150 (176)
131 1a9n_A U2A', U2A'; complex (nu 98.9 1.4E-09 4.8E-14 101.0 6.5 59 665-725 87-152 (176)
132 2o6r_A Variable lymphocyte rec 98.9 1.4E-08 4.7E-13 94.4 12.7 36 665-701 99-135 (177)
133 1w8a_A SLIT protein; signaling 98.9 1E-08 3.5E-13 96.6 11.5 123 539-701 11-137 (192)
134 4b8c_D Glucose-repressible alc 98.8 8.1E-10 2.8E-14 126.3 3.1 108 529-643 217-325 (727)
135 2o6r_A Variable lymphocyte rec 98.8 2.6E-08 9E-13 92.5 11.9 107 512-619 28-137 (177)
136 4fs7_A Uncharacterized protein 98.8 2.5E-07 8.5E-12 98.0 20.7 185 513-722 186-375 (394)
137 4fs7_A Uncharacterized protein 98.8 3.1E-07 1E-11 97.4 19.6 61 628-699 314-375 (394)
138 4b8c_D Glucose-repressible alc 98.7 8.3E-09 2.8E-13 118.0 6.4 191 512-723 173-369 (727)
139 1ds9_A Outer arm dynein; leuci 98.7 1.2E-10 4.2E-15 110.6 -8.8 124 513-643 24-149 (198)
140 3g39_A Variable lymphocyte rec 98.6 1.4E-07 4.6E-12 86.8 9.9 80 560-643 30-111 (170)
141 2r9u_A Variable lymphocyte rec 98.6 1.6E-07 5.5E-12 86.6 10.3 80 560-643 33-114 (174)
142 1ds9_A Outer arm dynein; leuci 98.6 2.2E-10 7.5E-15 108.8 -10.1 107 555-701 43-151 (198)
143 3g39_A Variable lymphocyte rec 98.5 4.2E-07 1.4E-11 83.4 10.0 102 514-619 11-115 (170)
144 2r9u_A Variable lymphocyte rec 98.5 5.2E-07 1.8E-11 83.1 10.2 100 515-619 15-118 (174)
145 3un9_A NLR family member X1; l 98.3 3E-08 1E-12 103.7 -2.3 61 512-572 72-138 (372)
146 4gt6_A Cell surface protein; l 98.3 4.5E-05 1.5E-09 80.6 20.9 76 346-426 65-145 (394)
147 3e4g_A ATP synthase subunit S, 98.2 9.4E-07 3.2E-11 79.9 4.6 88 345-433 61-154 (176)
148 4gt6_A Cell surface protein; l 98.2 5.9E-05 2E-09 79.6 19.1 123 309-448 60-189 (394)
149 3un9_A NLR family member X1; l 98.2 5.3E-08 1.8E-12 101.8 -4.8 165 535-706 71-254 (372)
150 3e4g_A ATP synthase subunit S, 98.1 1.9E-06 6.4E-11 77.9 5.4 89 606-705 61-154 (176)
151 4h09_A Hypothetical leucine ri 98.1 0.00016 5.4E-09 75.9 20.7 83 345-437 46-130 (379)
152 2ra8_A Uncharacterized protein 98.1 3.2E-06 1.1E-10 87.4 7.1 147 528-700 164-317 (362)
153 2ra8_A Uncharacterized protein 98.1 5.4E-06 1.8E-10 85.7 8.4 81 344-426 138-227 (362)
154 2ifg_A High affinity nerve gro 98.1 6.6E-06 2.3E-10 85.4 8.7 93 525-619 21-116 (347)
155 4h09_A Hypothetical leucine ri 98.1 0.00049 1.7E-08 72.1 23.3 79 309-402 43-123 (379)
156 2ifg_A High affinity nerve gro 98.1 6.7E-06 2.3E-10 85.4 8.3 100 539-644 11-113 (347)
157 1io0_A Tropomodulin; LRR prote 97.4 5.8E-05 2E-09 70.0 2.3 16 685-700 146-161 (185)
158 1io0_A Tropomodulin; LRR prote 97.3 3.7E-05 1.3E-09 71.4 0.1 38 606-643 121-160 (185)
159 3rw6_A Nuclear RNA export fact 97.0 0.00057 2E-08 66.7 5.1 82 341-424 166-257 (267)
160 3rw6_A Nuclear RNA export fact 96.7 0.00042 1.4E-08 67.7 1.7 78 512-591 170-258 (267)
161 3rfe_A Platelet glycoprotein I 93.3 0.11 3.6E-06 44.4 5.4 36 665-701 30-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 91.9 0.07 2.4E-06 49.0 2.5 37 607-643 71-107 (197)
163 3rfe_A Platelet glycoprotein I 90.9 0.29 1E-05 41.6 5.2 45 678-725 19-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 90.0 0.075 2.6E-06 48.8 0.8 34 513-546 42-80 (197)
165 2lz0_A Uncharacterized protein 21.4 84 0.0029 24.6 3.7 39 659-699 13-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-45 Score=427.84 Aligned_cols=630 Identities=16% Similarity=0.080 Sum_probs=355.5
Q ss_pred CCcCCCCCCCCCccCceEeCCCCCCChhhccccccCCceeEecCCCCCCChhhhHHh--ccCCCCCCCcEEEEeecCCCC
Q 035893 5 MPLGIGKLTCLQTLGNFAVGKDNGSGLRKLKSLIHLQGTLKISKLENVKDDGDAKEA--RLDGKKNLRELSLNWTCSTDG 82 (755)
Q Consensus 5 lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~ 82 (755)
+|..+++|++|+.++....+. ......++++++|+ .|++++.. ....... .+.++++|++|++++|.-
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~--~~l~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~l~~l~~L~~L~Ls~n~l--- 138 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHI--NGSVSGFKCSASLT-SLDLSRNS----LSGPVTTLTSLGSCSGLKFLNVSSNTL--- 138 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCE--EECCCCCCCCTTCC-EEECCSSE----EEEEGGGGGGGGGCTTCCEEECCSSEE---
T ss_pred cChhHhccCcccccCCcCCCc--CCCchhhccCCCCC-EEECCCCc----CCCcCCChHHHhCCCCCCEEECcCCcc---
Confidence 566677776666663322111 01123566667777 77777633 2222222 477788888888866311
Q ss_pred CCccchhhHHhHhhcCCCCCCcceEEEeeeCCCcCCC-C---cCCCCCCCccEEEEecCCCCCcCCCCCCCCCcceEeec
Q 035893 83 SSSREAETETGVLDMLKPHKNLEQFGICGYGGTKFPT-W---LGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVH 158 (755)
Q Consensus 83 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~---~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~ 158 (755)
.. ......+..+++|++|+++++.....+. . + ..+++|++|++++|.. ....+++.+++|++|+++
T Consensus 139 -----~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~Ls 208 (768)
T 3rgz_A 139 -----DF--PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS--DGCGELKHLAISGNKI-SGDVDVSRCVNLEFLDVS 208 (768)
T ss_dssp -----EC--CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT--TCCTTCCEEECCSSEE-ESCCBCTTCTTCCEEECC
T ss_pred -----CC--cCCHHHhccCCCCCEEECCCCccCCcCChhhhhh--ccCCCCCEEECCCCcc-cccCCcccCCcCCEEECc
Confidence 00 0001122456788888888877655432 2 3 2478888888888763 333345778888888888
Q ss_pred ccccceeeCccccCCCCCCCCCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCC-CCCCccEEE
Q 035893 159 GMSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE-HLPALEMLV 237 (755)
Q Consensus 159 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~l~~L~~L~ 237 (755)
+|.....++. ++ .+++|++|++.++.- .. ..+..+..+++|++|++++|. +.+.+|. .+++|++|+
T Consensus 209 ~n~l~~~~~~--l~-----~l~~L~~L~Ls~n~l-~~----~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 209 SNNFSTGIPF--LG-----DCSALQHLDISGNKL-SG----DFSRAISTCTELKLLNISSNQ-FVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp SSCCCSCCCB--CT-----TCCSCCEEECCSSCC-CS----CHHHHTTTCSSCCEEECCSSC-CEESCCCCCCTTCCEEE
T ss_pred CCcCCCCCcc--cc-----cCCCCCEEECcCCcC-CC----cccHHHhcCCCCCEEECCCCc-ccCccCccccCCCCEEE
Confidence 7643333332 22 278888888887752 11 112225677888888888885 5555553 467888888
Q ss_pred eccCccccc---cCCC-CCccceEEEcCCCCce-eecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCC
Q 035893 238 IEECEELSI---SITS-LPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNIC 312 (755)
Q Consensus 238 l~~~~~l~~---~~~~-l~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~ 312 (755)
+++|..... .+.. +++|+.|+++++.... .......+++|++|+++++.-. |.+| ...+..++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~----~~ip--------~~~l~~l~ 343 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS----GELP--------MDTLLKMR 343 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE----EECC--------HHHHTTCT
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc----CcCC--------HHHHhcCC
Confidence 887764321 1222 4788888887765332 1222334455555555543211 1111 11123344
Q ss_pred CcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccC--CCCccEEEEccCCCcccCCC-cc
Q 035893 313 SLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLS--LSSLREIEICKCSSLVSFPE-VA 389 (755)
Q Consensus 313 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~l~~~~~-~~ 389 (755)
+|++|+++++.-...++.... ...++|++|++++|...+.+|..+.. +++|++|++++|.....+|. +.
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~--------~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLT--------NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHH--------HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred CCCEEeCcCCccCccccHHHH--------hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 555555554421112211100 00025555555555444444444433 44555555555543333332 33
Q ss_pred CCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc-cCCCCCcEEeeeCCcCCCCCcccccccccCC
Q 035893 390 LPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV-QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSS 468 (755)
Q Consensus 390 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 468 (755)
.+++|++|++++|...+.+|..+ ..+++|+.|++++|.....++.. ...++|++|++++|.-...++
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---------- 483 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP---------- 483 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC----------
T ss_pred cCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC----------
Confidence 35555555555555443444433 44555555555553222222221 223334444444432111111
Q ss_pred CccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCC
Q 035893 469 SSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCEN 548 (755)
Q Consensus 469 ~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 548 (755)
.. ++.+ ++|++|++++|...+.+|..+..+++|++|++++|..
T Consensus 484 -----------------------------------~~-l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 484 -----------------------------------SG-LSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp -----------------------------------GG-GGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred -----------------------------------HH-HhcC-CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 11 2222 4667777777766666666666677777777777655
Q ss_pred CCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCC-----------------------------------
Q 035893 549 LVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGG----------------------------------- 593 (755)
Q Consensus 549 l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~----------------------------------- 593 (755)
.+.+|..+..+++|++|++++|...+.+|..+.....+..+.+..
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 556666666666777777777766666665544433333222211
Q ss_pred -----------c-C-CCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCC
Q 035893 594 -----------A-L-PSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGT 660 (755)
Q Consensus 594 -----------~-~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (755)
+ + ..++..++.+++|++|++++|.+....+ ..+.++++|+.|++++| .-...+|...
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N-~l~g~ip~~l----- 676 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHN-DISGSIPDEV----- 676 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSS-CCCSCCCGGG-----
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcCC-ccCCCCChHH-----
Confidence 1 0 0011345667899999999999887666 56899999999999994 4455777665
Q ss_pred CCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCcchhH----hhccCCCc
Q 035893 661 ALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPLIEE----KCRKDGGQ 736 (755)
Q Consensus 661 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~----~~~~~~~~ 736 (755)
..+++|++|+++++.....+|..+..+++|++|++++|+..+.+|..+.+.++....+.|||.++- .|....++
T Consensus 677 --~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~ 754 (768)
T 3rgz_A 677 --GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754 (768)
T ss_dssp --GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--
T ss_pred --hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccC
Confidence 578999999999976666899999999999999999997777899887888888999999987642 68999999
Q ss_pred ccccccCcceEE
Q 035893 737 YWDLLTHIPYVV 748 (755)
Q Consensus 737 ~~~~~~~~~~~~ 748 (755)
+|++++|++.++
T Consensus 755 ~~~~~~~~~~~~ 766 (768)
T 3rgz_A 755 GYAHHQRSHHHH 766 (768)
T ss_dssp ------------
T ss_pred CCCCCCCccccC
Confidence 999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-40 Score=383.94 Aligned_cols=564 Identities=18% Similarity=0.112 Sum_probs=385.7
Q ss_pred hcCCCCCCcceEEEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCC---CCCCCCCcceEeecccccceeeCccccC
Q 035893 96 DMLKPHKNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP---SVGQLPSLKHLTVHGMSRVKRLGSEFYG 172 (755)
Q Consensus 96 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp---~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 172 (755)
..+..+++|+.++++.+....+|..++ .+++|++|+|++|.....+| .++.+++|++|++++|.....++....
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~- 147 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHINGSVSGFK--CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG- 147 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEECCCCCC--CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC-
T ss_pred hhHhccCcccccCCcCCCcCCCchhhc--cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHh-
Confidence 455566788888888776666677775 59999999999987655555 578899999999998644333333321
Q ss_pred CCCCCCCCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCC-CCCCCccEEEeccCccccc--cCC
Q 035893 173 DDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP-EHLPALEMLVIEECEELSI--SIT 249 (755)
Q Consensus 173 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~~--~~~ 249 (755)
..+++|++|+++++. +....... ...+..+++|++|++++|. +.+..| ..+++|++|++++|..... .+.
T Consensus 148 ----~~l~~L~~L~Ls~n~-l~~~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~ 220 (768)
T 3rgz_A 148 ----LKLNSLEVLDLSANS-ISGANVVG-WVLSDGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLG 220 (768)
T ss_dssp ----CCCTTCSEEECCSSC-CEEETHHH-HHHTTCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCT
T ss_pred ----ccCCCCCEEECCCCc-cCCcCChh-hhhhccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccc
Confidence 238999999999886 22211100 0004578899999999996 665555 4688999999998865431 266
Q ss_pred CCCccceEEEcCCCCce-eecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchh
Q 035893 250 SLPALCKMEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSL 328 (755)
Q Consensus 250 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l 328 (755)
.+++|+.|+++++.... .......+++|++|+++++.- .|.+|. ..+++|++|+++++.-...+
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l----~~~~~~-----------~~l~~L~~L~L~~n~l~~~i 285 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF----VGPIPP-----------LPLKSLQYLSLAENKFTGEI 285 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC----EESCCC-----------CCCTTCCEEECCSSEEEESC
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc----cCccCc-----------cccCCCCEEECcCCccCCcc
Confidence 78899999998877542 334456788999999988743 233332 25678888888887433233
Q ss_pred hhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--ccCCCCccEEEeccCCCCc
Q 035893 329 VAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIQISYCDALK 406 (755)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~~~ 406 (755)
+.. +...+++|++|++++|...+.+|..++.+++|++|++++|.....+|. +..+++|++|++++|...+
T Consensus 286 p~~--------~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 286 PDF--------LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp CCC--------SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CHH--------HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 221 112347899999999987778888899999999999999865556764 5668999999999998666
Q ss_pred ccchhhhccCCC-CccEEEeccCCcccccccc-cC--CCCCcEEeeeCCcCCCCCcccccccccCCCcccccccccccee
Q 035893 407 SLPEAWMCHTNS-SLEILIILYCNSLTYIAEV-QL--PPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLV 482 (755)
Q Consensus 407 ~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~-~~--~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~ 482 (755)
.+|..+ ..++ +|+.|++++|.....++.. .. +++|++|++++|.-...+ +.....+++|+.|+
T Consensus 358 ~~p~~l--~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-----------p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 358 ELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-----------PPTLSNCSELVSLH 424 (768)
T ss_dssp CCCTTH--HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC-----------CGGGGGCTTCCEEE
T ss_pred cccHHH--HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc-----------CHHHhcCCCCCEEE
Confidence 777665 4555 8999999885433333332 11 456888888776422222 22333445666666
Q ss_pred eccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCc
Q 035893 483 IWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKL 562 (755)
Q Consensus 483 i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 562 (755)
++++ .+.+.++.. ++.+ ++|+.|++++|...+.+|..+..+++|++|++++|...+.+|..+..+++|
T Consensus 425 Ls~N----------~l~~~~p~~-l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 425 LSFN----------YLSGTIPSS-LGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp CCSS----------EEESCCCGG-GGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CcCC----------cccCcccHH-HhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 5543 222222221 2333 467777777777666667667777777777777775555666666667777
Q ss_pred eeEEeccCcCcccccccCCCCCCcceeEeCCc-CC-CCccCCCCCCceeeEeecCCcccchhhhh---------------
Q 035893 563 RTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LP-SLEEEDGLPTNLHFLKIEGNMEIWKSMIE--------------- 625 (755)
Q Consensus 563 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------- 625 (755)
++|++++|...+.+|..+..+++|++|++++| +. .++..++.+++|++|++++|++....+..
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 77777777766677777777777777777776 11 12244556677777777777655332211
Q ss_pred ---------------------------------------------------cCcCcCCCCCccEEEEeccCCCccccccc
Q 035893 626 ---------------------------------------------------RGRGFHRFSSLRELIIRGCDDDMVSFPLE 654 (755)
Q Consensus 626 ---------------------------------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 654 (755)
++..+..+++|++|++++| .....+|.+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHH
Confidence 1124566788999999984 444567765
Q ss_pred ccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCC-CcccccceeecCCcc
Q 035893 655 DKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKG-LPSSLLRLNIAGCPL 725 (755)
Q Consensus 655 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c~~ 725 (755)
. ..+++|+.|+++++.....+|..+..+++|+.|++++|...+.+|... -+++|++|++++|+.
T Consensus 652 l-------~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 652 I-------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp G-------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred H-------hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 5 578999999999976666899999999999999999996555677632 278999999999874
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-36 Score=350.68 Aligned_cols=555 Identities=15% Similarity=0.084 Sum_probs=355.5
Q ss_pred CCCCCCcceEEEeeeCCCcC-CCCcCCCCCCCccEEEEecCCCCCcCC--CCCCCCCcceEeecccccceeeCccccCCC
Q 035893 98 LKPHKNLEQFGICGYGGTKF-PTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVHGMSRVKRLGSEFYGDD 174 (755)
Q Consensus 98 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~lp--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 174 (755)
+..+++|++|+++++.+..+ |..+. .+++|++|++++|. ++.+| .++.+++|++|+++++ .+..++...++.
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~- 119 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK- 119 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT-
T ss_pred HhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCC-ccCccChhHccc-
Confidence 34456777777777766554 33342 46777777777764 55555 3777777777777764 345554333322
Q ss_pred CCCCCCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCC-----CCCCccEEEeccCccccc---
Q 035893 175 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE-----HLPALEMLVIEECEELSI--- 246 (755)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l~~--- 246 (755)
+++|++|++.++. +... .+..+..+++|++|++++|. +++..+. ..++|++|++++|..-..
T Consensus 120 ----l~~L~~L~Ls~n~-l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 120 ----QKNLITLDLSHNG-LSST----KLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp ----CTTCCEEECCSSC-CSCC----CCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred ----cCCCCEEECCCCc-cccc----CchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChh
Confidence 6777777777664 1111 11124566777777777764 4432221 224566666655533221
Q ss_pred cCCCCCccceEEEcCCCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcc
Q 035893 247 SITSLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQ 326 (755)
Q Consensus 247 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~ 326 (755)
.+..+++|+.+.+.++... ... ...+......++|+.|+++++. ++
T Consensus 190 ~~~~l~~L~~L~l~~~~l~-----------------------~~~----------~~~~~~~l~~~~L~~L~L~~n~-l~ 235 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLG-----------------------PSL----------TEKLCLELANTSIRNLSLSNSQ-LS 235 (680)
T ss_dssp GGGGSSEECEEECTTCCCH-----------------------HHH----------HHHHHHHHTTSCCCEEECTTSC-CC
T ss_pred hhhhhhhhhhhhccccccC-----------------------hhh----------HHHHHHHhhhccccEEEccCCc-cc
Confidence 1222334444443332210 000 0000000123678888888773 43
Q ss_pred hhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC-CccCCCCccEEEeccCCCC
Q 035893 327 SLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIQISYCDAL 405 (755)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~~ 405 (755)
.+....+.. . ..++|++|++++|...+..|..++.+++|++|++++|......+ .+..+++|++|++++|...
T Consensus 236 ~~~~~~~~~----l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 236 TTSNTTFLG----L--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp EECTTTTGG----G--GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred ccChhHhhc----c--CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 332221111 0 01459999999998776667788889999999999986544443 3556899999999877533
Q ss_pred c-----ccc---hhhhccCCCCccEEEeccCCcccccccc--cCCCCCcEEeeeCCcC-CCCCcccccccccCCCccccc
Q 035893 406 K-----SLP---EAWMCHTNSSLEILIILYCNSLTYIAEV--QLPPSLKQLDIYNCDN-IRTLTVEEGIQCSSSSSRRYT 474 (755)
Q Consensus 406 ~-----~~~---~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~-L~~l~~~~~~~~~~~~~~~~~ 474 (755)
. .+| ...+ ..+++|++|++++ +.++.++.. ...++|++|++++|.. +..+.. .. .....
T Consensus 310 ~~~~~~~lp~i~~~~~-~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~--~~------f~~~~ 379 (680)
T 1ziw_A 310 QSISLASLPKIDDFSF-QWLKCLEHLNMED-NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN--ET------FVSLA 379 (680)
T ss_dssp C------CCEECTTTT-TTCTTCCEEECCS-CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT--TT------TGGGT
T ss_pred cccccccccccChhhc-ccCCCCCEEECCC-CccCCCChhHhccccCCcEEECCCCchhhhhcch--hh------hcccc
Confidence 2 122 1122 6788999999988 456666544 3356788888887641 222211 00 01122
Q ss_pred cccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhh-hhcCCCCCcCeEEEecCCCCCccC
Q 035893 475 SYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIA-ERLDNNTSLETISISNCENLVSFP 553 (755)
Q Consensus 475 ~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~ 553 (755)
.++|+.++++++. +.+..+. .++.+ ++|+.|++++|...+.+| ..+..+++|++|++++|......+
T Consensus 380 ~~~L~~L~L~~n~----------l~~~~~~-~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 380 HSPLHILNLTKNK----------ISKIESD-AFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp TSCCCEEECTTSC----------CCEECTT-TTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred cCcCceEECCCCC----------CCeEChh-hhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence 3467777766543 2222111 13333 689999999998876665 568899999999999996544455
Q ss_pred CCCCCCCCceeEEeccCcCc--ccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcC--
Q 035893 554 EGGLPCAKLRTLKIYDCKRL--KALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERG-- 627 (755)
Q Consensus 554 ~~~~~l~~L~~L~l~~~~~l--~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-- 627 (755)
..+..+++|+.|++++|... ..+|..+.++++|+.|++++| +..++ ..+..+++|++|++++|.+.......+|
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence 67777999999999999754 567888999999999999988 44444 4577889999999999998765332111
Q ss_pred --cCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCCCCCCC
Q 035893 628 --RGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLK 704 (755)
Q Consensus 628 --~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~ 704 (755)
..+.++++|++|++++| .+..+|... +..+++|++|++++ +.++.+|. .+..+++|++|++++| .++
T Consensus 528 ~~~~~~~l~~L~~L~L~~N--~l~~i~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~ 597 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESN--GFDEIPVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LIT 597 (680)
T ss_dssp CCCTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred cchhhcCCCCCCEEECCCC--CCCCCCHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCC
Confidence 23789999999999984 455666432 46789999999988 58888887 5688999999999999 788
Q ss_pred CCCCCCC---cccccceeecCCcchhHhhcc-CCCccccc
Q 035893 705 YFPEKGL---PSSLLRLNIAGCPLIEEKCRK-DGGQYWDL 740 (755)
Q Consensus 705 ~l~~~~~---~~~L~~L~i~~c~~l~~~~~~-~~~~~~~~ 740 (755)
.+++..+ +++|+.|++++||...+ |.. ..-..|.+
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~~~~~~~~~~~ 636 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCT-CESIAWFVNWIN 636 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBC-CCCCSSEECCSS
T ss_pred ccChhHhcccccccCEEEccCCCcccC-CccHHHHHHHHH
Confidence 8877543 57999999999997654 442 33334543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-35 Score=339.17 Aligned_cols=538 Identities=15% Similarity=0.096 Sum_probs=349.0
Q ss_pred ccCCCCCCCcEEEEeecCCCCCCccchhhHHhHhhcCCCCCCcceEEEeeeCCCcCCCC-cCCCCCCCccEEEEecCCCC
Q 035893 62 RLDGKKNLRELSLNWTCSTDGSSSREAETETGVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSSFLNLVTLKFEDCGMC 140 (755)
Q Consensus 62 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~ 140 (755)
.+.++++|++|++++| . ....... .+..+++|++|+++++....+|.. +. .+++|++|++++|. +
T Consensus 44 ~~~~l~~L~~L~Ls~n--~------l~~~~~~---~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L~~n~-l 109 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFN--T------ISKLEPE---LCQKLPMLKVLNLQHNELSQLSDKTFA--FCTNLTELHLMSNS-I 109 (680)
T ss_dssp GGGGGTTCSEEECCSS--C------CCCCCTT---HHHHCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSC-C
T ss_pred HHhCCCcCcEEECCCC--c------cCccCHH---HHhcccCcCEEECCCCccCccChhhhc--cCCCCCEEECCCCc-c
Confidence 3666777888887652 1 1111111 222346788888887777777653 42 47888888888775 4
Q ss_pred CcCC--CCCCCCCcceEeecccccceeeCccccCCCCCCCCCcccEEEccccccccccccCCCCCccccCCCcceEeecc
Q 035893 141 TALP--SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILR 218 (755)
Q Consensus 141 ~~lp--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 218 (755)
+.++ .++.+++|++|+++++. +..++...++ .+++|++|++.++. ++....... ....+++|++|++++
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~~L~L~~n~-l~~~~~~~~--~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQV-----QLENLQELLLSNNK-IQALKSEEL--DIFANSSLKKLELSS 180 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSS-----CCTTCCEEECCSSC-CCCBCHHHH--GGGTTCEESEEECTT
T ss_pred CccChhHccccCCCCEEECCCCc-ccccCchhhc-----ccccCCEEEccCCc-ccccCHHHh--hccccccccEEECCC
Confidence 4554 57788888888888753 3333332222 27788888887764 221111000 012457788888888
Q ss_pred cccccccCCC---CCCCccEEEeccCccccccC------CCCCccceEEEcCCCCceeecccCCCCCCceeEeecCCCcc
Q 035893 219 CSKLQGTFPE---HLPALEMLVIEECEELSISI------TSLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQV 289 (755)
Q Consensus 219 c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~------~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 289 (755)
|. +++..|. .+++|+.+.+.++..-.... ...++|+.|++.++........
T Consensus 181 n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~------------------- 240 (680)
T 1ziw_A 181 NQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT------------------- 240 (680)
T ss_dssp CC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-------------------
T ss_pred Cc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-------------------
Confidence 84 6645554 34667777776554221110 1246788888877643222110
Q ss_pred cccCCCCCCccchhhccccccC--CCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccC
Q 035893 290 FLSGPLKPRIPKLEELGISNNI--CSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLS 367 (755)
Q Consensus 290 ~~~~~i~~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 367 (755)
.+..+ ++|+.|+++++. ++.+.... ...+++|++|++++|...+..|..+..
T Consensus 241 -----------------~~~~l~~~~L~~L~Ls~n~-l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (680)
T 1ziw_A 241 -----------------TFLGLKWTNLTMLDLSYNN-LNVVGNDS--------FAWLPQLEYFFLEYNNIQHLFSHSLHG 294 (680)
T ss_dssp -----------------TTGGGGGSCCCEEECTTSC-CCEECTTT--------TTTCTTCCEEECCSCCBSEECTTTTTT
T ss_pred -----------------HhhccCcCCCCEEECCCCC-cCccCccc--------ccCcccccEeeCCCCccCccChhhhcC
Confidence 00111 346666666652 33332211 123478888888888777777778888
Q ss_pred CCCccEEEEccCCCcc-----cCC-----CccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCC-ccccccc
Q 035893 368 LSSLREIEICKCSSLV-----SFP-----EVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCN-SLTYIAE 436 (755)
Q Consensus 368 l~~L~~L~l~~~~~l~-----~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~ 436 (755)
+++|+.|++++|.... .+| .+..+++|++|++++|......+..+ ..+++|++|++++|. .+..++.
T Consensus 295 l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTCBSCCCEECT
T ss_pred CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh--ccccCCcEEECCCCchhhhhcch
Confidence 8888888888764222 222 34458889999998888554444333 778889999888753 2334433
Q ss_pred ccC----CCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCC
Q 035893 437 VQL----PPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPP 512 (755)
Q Consensus 437 ~~~----~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~ 512 (755)
..+ .++|+.|+++++. +..+. +..+..+++|+.++++++ .+.+.++...++.+ +
T Consensus 373 ~~f~~~~~~~L~~L~L~~n~-l~~~~----------~~~~~~l~~L~~L~L~~N----------~l~~~~~~~~~~~l-~ 430 (680)
T 1ziw_A 373 ETFVSLAHSPLHILNLTKNK-ISKIE----------SDAFSWLGHLEVLDLGLN----------EIGQELTGQEWRGL-E 430 (680)
T ss_dssp TTTGGGTTSCCCEEECTTSC-CCEEC----------TTTTTTCTTCCEEECCSS----------CCEEECCSGGGTTC-T
T ss_pred hhhcccccCcCceEECCCCC-CCeEC----------hhhhhCCCCCCEEeCCCC----------cCccccCcccccCc-c
Confidence 322 1468888887764 22221 112334456677765543 33333332224444 6
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCC--CccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENL--VSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
+|++|++++|......+..+..+++|+.|++++|... +.+|..+..+++|++|++++|......+..+.++++|++|+
T Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 510 (680)
T 1ziw_A 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510 (680)
T ss_dssp TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEe
Confidence 9999999999887777888899999999999998532 45788888899999999999996655556789999999999
Q ss_pred eCCc-CCCCc---------cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCC
Q 035893 591 IGGA-LPSLE---------EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGT 660 (755)
Q Consensus 591 ls~~-~~~l~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (755)
+++| +..+. ..+..+++|++|++++|.+...+. ..+.++++|++|++++| .++.++...
T Consensus 511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~----- 579 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGLN--NLNTLPASV----- 579 (680)
T ss_dssp CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTT-----
T ss_pred CCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH----HHcccccCcceeECCCC--CCCcCCHhH-----
Confidence 9988 32221 126778999999999998875433 46899999999999984 555666433
Q ss_pred CCCCCCccceEecccCCCCccccc-ccc-CCCCccEEeeCCCCCCCC
Q 035893 661 ALPLPASLTSLTIFSFPSLERLSS-SIV-DLQNLTQLDLGDCPKLKY 705 (755)
Q Consensus 661 ~~~~~~~L~~L~l~~~~~l~~l~~-~~~-~~~~L~~L~l~~c~~l~~ 705 (755)
+..+++|++|+++++ .++.+++ .+. .+++|++|++++|+..-.
T Consensus 580 -~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 580 -FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp -TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred -hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC
Confidence 457899999999995 7777776 454 789999999999975443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.3e-34 Score=322.19 Aligned_cols=506 Identities=15% Similarity=0.110 Sum_probs=246.0
Q ss_pred CCcceEEEeeeCCCcC-CCCcCCCCCCCccEEEEecCCCCCcCC-CCCCCCCcceEeecccccceeeCccccCCCCCCCC
Q 035893 102 KNLEQFGICGYGGTKF-PTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPF 179 (755)
Q Consensus 102 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 179 (755)
+++++|+++++.+..+ |..+. .+++|++|++++|......| .++++++|++|+++++ .+..+....++. +
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l 104 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSG-----P 104 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSS-----C
T ss_pred CcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcc-----c
Confidence 4566677766666655 33442 46677777777665333334 4666777777777664 333333222222 6
Q ss_pred CcccEEEccccccccccccCCCCCccccCCCcceEeecccccccc-cCCC--CCCCccEEEeccCccccc---cCCCCCc
Q 035893 180 PCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG-TFPE--HLPALEMLVIEECEELSI---SITSLPA 253 (755)
Q Consensus 180 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~p~--~l~~L~~L~l~~~~~l~~---~~~~l~~ 253 (755)
++|++|++.++. +.... +..+..+++|++|++++|. +.+ .+|. .+++|++|++++|..... .+..+++
T Consensus 105 ~~L~~L~L~~n~-i~~l~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 105 KALKHLFFIQTG-ISSID----FIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTCCEEECTTSC-CSCGG----GSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred ccccEeeccccC-cccCC----cchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 667777766664 21110 1114566677777777764 442 1232 245666666666644322 2334555
Q ss_pred cc--eEEEcCCCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCC--CcCeEEEccCCCcchhh
Q 035893 254 LC--KMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNIC--SLKRLVITSCPTLQSLV 329 (755)
Q Consensus 254 L~--~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~--~L~~L~l~~~~~l~~l~ 329 (755)
|+ .+++.++.............+++.|++.++...... ...+. .++.+.+..+..+....
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI----------------FKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH----------------HHHTTTCEEEEEECCCCTTSCCCC
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHH----------------hhhccccchhheechhhccccccc
Confidence 55 555555544333332223344555555544322111 01111 12222222222221110
Q ss_pred hhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCccc
Q 035893 330 AEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSL 408 (755)
Q Consensus 330 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~ 408 (755)
... ..+..+ ...+|+.|++++|...+..+..++.+++|++|++++|. +..+|. +..+++|++|++++|......
T Consensus 243 i~~--~~~~~l--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 243 ISP--AVFEGL--CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCG--GGGGGG--GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cCh--hHhchh--hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCc
Confidence 000 000000 00267777777776554445556777777777777774 445543 445677777777777644333
Q ss_pred chhhhccCCCCccEEEeccCCcccccccc--cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccC
Q 035893 409 PEAWMCHTNSSLEILIILYCNSLTYIAEV--QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWEC 486 (755)
Q Consensus 409 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c 486 (755)
+..+ ..+++|++|++++|.....++.. ...+
T Consensus 318 ~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--------------------------------------------- 350 (606)
T 3t6q_A 318 QISA--SNFPSLTHLSIKGNTKRLELGTGCLENLE--------------------------------------------- 350 (606)
T ss_dssp GGCG--GGCTTCSEEECCSCSSCCBCCSSTTTTCT---------------------------------------------
T ss_pred hhhh--hccCcCCEEECCCCCcccccchhhhhccC---------------------------------------------
Confidence 3333 56667777777664332233321 1122
Q ss_pred CCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhh--hhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCcee
Q 035893 487 PSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELI--AERLDNNTSLETISISNCENLVSFPEGGLPCAKLRT 564 (755)
Q Consensus 487 ~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 564 (755)
+|++|++++|...+.. +..+..+++|++|++++|......+..+..+++|++
T Consensus 351 --------------------------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 351 --------------------------NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp --------------------------TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred --------------------------cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 3444444444333222 333444445555555544322223333444445555
Q ss_pred EEeccCcCcccccc-cCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEE
Q 035893 565 LKIYDCKRLKALPK-GLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELII 641 (755)
Q Consensus 565 L~l~~~~~l~~~~~-~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 641 (755)
|++++|......+. .+..+++|++|++++| +.... ..+..+++|++|++++|.+...... .+..+..+++|++|++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVL 483 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEEC
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEEC
Confidence 55555443333222 2444555555555544 11111 2234445555555555554432110 0123556666666666
Q ss_pred eccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC--ccccccee
Q 035893 642 RGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLN 719 (755)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 719 (755)
++| .+..++. ..+..+++|++|+++++......|..+..+++| +|++++| .++.+++..+ +++|+.|+
T Consensus 484 s~n--~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 484 SFC--DLSSIDQ------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp TTS--CCCEECT------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEE
T ss_pred CCC--ccCccCh------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEe
Confidence 663 2222221 112456666666666653333344566777777 7777777 4555555433 56777777
Q ss_pred ecCCcch
Q 035893 720 IAGCPLI 726 (755)
Q Consensus 720 i~~c~~l 726 (755)
+++||..
T Consensus 554 l~~N~~~ 560 (606)
T 3t6q_A 554 LRQNPLD 560 (606)
T ss_dssp CTTCCEE
T ss_pred CCCCCcc
Confidence 7777643
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.7e-34 Score=323.35 Aligned_cols=202 Identities=18% Similarity=0.099 Sum_probs=146.1
Q ss_pred CCcceEEEccCccchh--hhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccccc-ccCCCCCCcce
Q 035893 512 PSLKSLRVNFCSKLEL--IAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALP-KGLHNLSTLQY 588 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~ 588 (755)
++|++|++++|..... ++..+..+++|++|++++| .+..+|..+..+++|++|++++|......+ ..+..+++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 5788888888866544 2566778888888888888 466677777778888888888888666655 46788888888
Q ss_pred eEeCCc-CCCC-ccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCC
Q 035893 589 LTIGGA-LPSL-EEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPA 666 (755)
Q Consensus 589 L~ls~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (755)
|++++| +... +..+..+++|++|++++|.+..... +..+..+++|++|++++| .+..++.. .+..++
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n--~l~~~~~~------~~~~l~ 497 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL---SNVFANTTNLTFLDLSKC--QLEQISWG------VFDTLH 497 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTS--CCCEECTT------TTTTCT
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch---HHhhccCCCCCEEECCCC--cCCccChh------hhcccc
Confidence 888887 2221 2456677888888888887765322 156788888999999884 33333321 235788
Q ss_pred ccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCcch
Q 035893 667 SLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCPLI 726 (755)
Q Consensus 667 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l 726 (755)
+|++|++++|......|..+..+++|++|++++| .++.+|.... +.+|++|++++||..
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCcc
Confidence 8999999886444444668888899999999998 5778877521 346899999888754
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-33 Score=321.73 Aligned_cols=505 Identities=14% Similarity=0.105 Sum_probs=321.1
Q ss_pred CCceeEecCCCCCCChhhhHHhccCCCCCCCcEEEEeecCCCCCCccchhhHHhHhhcCCCCCCcceEEEeeeCCCcC-C
Q 035893 40 LQGTLKISKLENVKDDGDAKEARLDGKKNLRELSLNWTCSTDGSSSREAETETGVLDMLKPHKNLEQFGICGYGGTKF-P 118 (755)
Q Consensus 40 L~~~L~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p 118 (755)
++ .|++++.. ........+.++++|++|++++|. ... .....+..+++|++|+++++....+ |
T Consensus 35 l~-~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~--------i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 35 TE-CLEFSFNV----LPTIQNTTFSRLINLTFLDLTRCQ--------IYW---IHEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CC-EEECTTCC----CSEECTTTSTTCTTCSEEECTTCC--------CCE---ECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred Cc-EEEccCCc----cCcCChhHhccCccceEEECCCCc--------cce---eChhhccCccccCeeeCCCCcccccCh
Confidence 45 66666522 223333457888899999986631 111 1123456678899999988887665 5
Q ss_pred CCcCCCCCCCccEEEEecCCCCCcC-C-CCCCCCCcceEeecccccceeeC-ccccCCCCCCCCCcccEEEccccccccc
Q 035893 119 TWLGDSSFLNLVTLKFEDCGMCTAL-P-SVGQLPSLKHLTVHGMSRVKRLG-SEFYGDDSPIPFPCLETLRFEDLQEWEE 195 (755)
Q Consensus 119 ~~~~~~~l~~L~~L~L~~~~~~~~l-p-~l~~l~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 195 (755)
.++. .+++|++|++++|. ++.+ | .++.+++|++|+++++ .+..++ ..+.+ +++|++|++.++. +..
T Consensus 99 ~~~~--~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~ 167 (606)
T 3t6q_A 99 TALS--GPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFP------TEKLKVLDFQNNA-IHY 167 (606)
T ss_dssp TTTS--SCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCC------CTTCCEEECCSSC-CCE
T ss_pred hhhc--ccccccEeeccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccC------CcccCEEEcccCc-ccc
Confidence 5664 58899999999876 4544 3 6888999999999885 454443 22222 7889999998875 221
Q ss_pred cccCCCCCccccCCCcc--eEeecccccccccCCCCC--CCccEEEeccCccccccCCCCCccc--eEEEcCCCCceeec
Q 035893 196 WIPHGSSQGVERFPKLR--ELHILRCSKLQGTFPEHL--PALEMLVIEECEELSISITSLPALC--KMEIGGCKKVVWRS 269 (755)
Q Consensus 196 ~~~~~~~~~~~~~~~L~--~L~l~~c~~l~~~~p~~l--~~L~~L~l~~~~~l~~~~~~l~~L~--~L~l~~~~~~~~~~ 269 (755)
.. +..++.+++|+ +|++++|. +.+..|..+ .+|++|++++|..+...+..+..+. .+.+..+.......
T Consensus 168 ~~----~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 168 LS----KEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp EC----HHHHHTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred cC----hhhhhhhcccceeEEecCCCc-cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 11 11256778888 88889885 665555443 4688888888775544444444333 23322222111100
Q ss_pred ccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccC--CCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccc
Q 035893 270 ATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNI--CSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRL 347 (755)
Q Consensus 270 ~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L 347 (755)
+. ...+..+ .+++.++++++ .++.++... ...+++|
T Consensus 243 ------------i~---------------------~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~--------~~~l~~L 280 (606)
T 3t6q_A 243 ------------IS---------------------PAVFEGLCEMSVESINLQKH-YFFNISSNT--------FHCFSGL 280 (606)
T ss_dssp ------------CC---------------------GGGGGGGGGSEEEEEECTTC-CCSSCCTTT--------TTTCTTC
T ss_pred ------------cC---------------------hhHhchhhcCceeEEEeecC-ccCccCHHH--------hccccCC
Confidence 00 0001111 26777888776 455543321 1234899
Q ss_pred cEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC-CccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEec
Q 035893 348 EYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIIL 426 (755)
Q Consensus 348 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 426 (755)
++|++++|.. ..+|..+..+++|++|++++|......+ .+..+++|++|++++|.....++...+ ..+++|++|+++
T Consensus 281 ~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~ 358 (606)
T 3t6q_A 281 QELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLS 358 (606)
T ss_dssp SEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEECC
T ss_pred CEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh-hccCcCCEEECC
Confidence 9999999964 5888889999999999999996544333 355699999999999987767766544 789999999999
Q ss_pred cCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhh
Q 035893 427 YCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLE 506 (755)
Q Consensus 427 ~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~ 506 (755)
+| .++.+... +. .
T Consensus 359 ~n-~l~~~~~~--~~-----------~----------------------------------------------------- 371 (606)
T 3t6q_A 359 HD-DIETSDCC--NL-----------Q----------------------------------------------------- 371 (606)
T ss_dssp SS-CCCEEEES--TT-----------T-----------------------------------------------------
T ss_pred CC-ccccccCc--ch-----------h-----------------------------------------------------
Confidence 85 44433200 00 0
Q ss_pred ccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCC
Q 035893 507 VGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLST 585 (755)
Q Consensus 507 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~ 585 (755)
++.+ ++|++|++++|...+..|..+..+++|++|++++|......+. .+..+++|++|++++|......|..+..+++
T Consensus 372 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 372 LRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred cccC-CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 1111 3566666666665555566666677777777777644333333 2555677777777777765555666677777
Q ss_pred cceeEeCCc-CCCC--c--cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCC
Q 035893 586 LQYLTIGGA-LPSL--E--EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGT 660 (755)
Q Consensus 586 L~~L~ls~~-~~~l--~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (755)
|++|++++| +... + ..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++.+.
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~----- 519 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHN--RLTSSSIEA----- 519 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSS--CCCGGGGGG-----
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh----hhhccccCCCEEECCCC--ccCcCChhH-----
Confidence 777777766 2111 1 235566778888888887766544 55778888888888874 233222211
Q ss_pred CCCCCCccceEecccCCCCcccc-ccccCCCCccEEeeCCCCC
Q 035893 661 ALPLPASLTSLTIFSFPSLERLS-SSIVDLQNLTQLDLGDCPK 702 (755)
Q Consensus 661 ~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~ 702 (755)
+..+++| +|+++++ .++.++ ..+..+++|++|++++|+-
T Consensus 520 -l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 520 -LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp -GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred -hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 2567788 8888885 555554 4678899999999999964
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-32 Score=312.72 Aligned_cols=490 Identities=14% Similarity=0.089 Sum_probs=276.9
Q ss_pred cCCCCCCcceEEEeeeCCCcC-CCCcCCCCCCCccEEEEecCCCCCcCC-CCCCCCCcceEeecccccceeeCccccCCC
Q 035893 97 MLKPHKNLEQFGICGYGGTKF-PTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDD 174 (755)
Q Consensus 97 ~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 174 (755)
.+..+++|++|+++++.+..+ |..+. .+++|++|++++|......| .++++++|++|++++| .+..++...++.
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~- 126 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQ- 126 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTT-
T ss_pred hccCCccCcEEeCCCCcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCC-
Confidence 445567788888877776665 34443 47778888887766333334 5777888888888774 344444322222
Q ss_pred CCCCCCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCCCCCC-------ccEEEeccCcccccc
Q 035893 175 SPIPFPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPA-------LEMLVIEECEELSIS 247 (755)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~-------L~~L~l~~~~~l~~~ 247 (755)
+++|++|++.++. +... ..+..++.+++|++|++++|. +++..|..+.. +.+|+++++....+.
T Consensus 127 ----l~~L~~L~L~~n~-l~~~---~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 127 ----LITLKKLNVAHNF-IHSC---KLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp ----CTTCCEEECCSSC-CCCC---CCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred ----CCCCCEEeCCCCc-ccce---echHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeC
Confidence 7777777777765 2111 122336677777778777774 55444544422 225666555433221
Q ss_pred CC--CCCccceEEEcCCCCce--eecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCC
Q 035893 248 IT--SLPALCKMEIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCP 323 (755)
Q Consensus 248 ~~--~l~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 323 (755)
.. ...+|+.++++++.... .......++.++.+.+..... ....
T Consensus 198 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~--------------------------------~~~~ 245 (606)
T 3vq2_A 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF--------------------------------KDER 245 (606)
T ss_dssp TTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC--------------------------------TTSC
T ss_pred cccccCceeeeeeccCCccchhHHHHHhcccccccccccccccc--------------------------------ccCC
Confidence 11 12255555555443210 111112223333332221100 0000
Q ss_pred CcchhhhhhHHHHHHhhhhccccccEEEE-ecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccC
Q 035893 324 TLQSLVAEEEKDQQQQLCELSCRLEYLKL-SNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYC 402 (755)
Q Consensus 324 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~ 402 (755)
.+..+.... ...+. --.++.+++ ..+...+.+|. +..+++|+.|++++|. +..++.+..+++|++|++++|
T Consensus 246 ~l~~~~~~~----~~~l~--~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 246 NLEIFEPSI----MEGLC--DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRC 317 (606)
T ss_dssp CCSCCCGGG----GTTGG--GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESC
T ss_pred cccccChHH----hhhhh--hccHhheeccccccccccccc-cccCCCCCEEEecCcc-chhhhhccccccCCEEEcccc
Confidence 011010000 00000 024555555 23333333443 5666666666666663 345555555666666666666
Q ss_pred CCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCcccccccccccee
Q 035893 403 DALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLV 482 (755)
Q Consensus 403 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~ 482 (755)
.. +.+| . -.+++|++|++++|..+..++. ...++|++|+++++. ++.+..
T Consensus 318 ~l-~~lp-~---~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~~~~----------------------- 367 (606)
T 3vq2_A 318 QL-KQFP-T---LDLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNA-LSFSGC----------------------- 367 (606)
T ss_dssp CC-SSCC-C---CCCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSC-EEEEEE-----------------------
T ss_pred cC-cccc-c---CCCCccceeeccCCcCccchhh-ccCCCCCEEECcCCc-cCCCcc-----------------------
Confidence 64 5555 2 1556666666666544443321 223345555554432 110000
Q ss_pred eccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccC-CCCCCCCC
Q 035893 483 IWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFP-EGGLPCAK 561 (755)
Q Consensus 483 i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~ 561 (755)
.+. ..+.+ ++|++|++++|... .+|..+..+++|+.|++++|...+..+ ..+..+++
T Consensus 368 -------------------~~~-~~~~~-~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 368 -------------------CSY-SDLGT-NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp -------------------CCH-HHHCC-SCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred -------------------hhh-hhccC-CcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 000 02222 57888888877643 355667778888888888875444444 35667788
Q ss_pred ceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCC--CccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccE
Q 035893 562 LRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPS--LEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRE 638 (755)
Q Consensus 562 L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 638 (755)
|++|++++|......|..+.++++|++|++++| +.. ++..+..+++|++|++++|.+....+ ..+.++++|++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~ 501 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRLQL 501 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCE
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh----hhhcccccCCE
Confidence 888888888877777777788888888888877 222 23456777888888888888776554 56788899999
Q ss_pred EEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCC-CccEEeeCCCCCCC
Q 035893 639 LIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQ-NLTQLDLGDCPKLK 704 (755)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~c~~l~ 704 (755)
|++++| .-....|... ..+++|++|++++| .++.+|..+..++ +|++|++++|+..-
T Consensus 502 L~Ls~N-~l~~~~~~~~-------~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 502 LNMSHN-NLLFLDSSHY-------NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECCSS-CCSCEEGGGT-------TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EECCCC-cCCCcCHHHc-------cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCccc
Confidence 999884 2222333333 57888999999985 6888988888887 59999999996443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=295.58 Aligned_cols=515 Identities=18% Similarity=0.128 Sum_probs=307.5
Q ss_pred EEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCC-CCCCCCCcceEeecccccceeeCccccCCCCCCCCCcccEEE
Q 035893 108 GICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFPCLETLR 186 (755)
Q Consensus 108 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~ 186 (755)
+.++++.+.+|. + .++|++|+|++|......| .++.+++|++|++++|..+..++...++. +++|+.|+
T Consensus 10 dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-----L~~L~~L~ 79 (844)
T 3j0a_A 10 FYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-----LPNLRILD 79 (844)
T ss_dssp EESCCCSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-----CTTCCEEE
T ss_pred EccCCCCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-----CCCCCEEE
Confidence 333444555554 2 4566666666654222223 56666666666666665555554333322 66666666
Q ss_pred ccccccccccccCCCCCccccCCCcceEeecccccccccCCC-----CCCCccEEEeccCccccc----cCCCCCccceE
Q 035893 187 FEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPE-----HLPALEMLVIEECEELSI----SITSLPALCKM 257 (755)
Q Consensus 187 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l~~----~~~~l~~L~~L 257 (755)
++++. +... .+..+..+++|++|++++|. +++.+|. .+++|++|++++|..... .+..+++|+.|
T Consensus 80 Ls~N~-l~~~----~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 80 LGSSK-IYFL----HPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CTTCC-CCEE----CTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCCc-Cccc----CHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 66654 1111 12225566777777777764 5443332 245555555555443221 23445555555
Q ss_pred EEcCCCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccC--CCcCeEEEccCCCcchhhhhhHHH
Q 035893 258 EIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNI--CSLKRLVITSCPTLQSLVAEEEKD 335 (755)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~ 335 (755)
+++++... +..+..+ ..+ ++|+.|+++++.-....+..
T Consensus 154 ~Ls~N~i~---------------------------~~~~~~l---------~~l~~~~L~~L~L~~n~l~~~~~~~---- 193 (844)
T 3j0a_A 154 DFSSNQIF---------------------------LVCEHEL---------EPLQGKTLSFFSLAANSLYSRVSVD---- 193 (844)
T ss_dssp EEESSCCC---------------------------CCCSGGG---------HHHHHCSSCCCEECCSBSCCCCCCC----
T ss_pred ECCCCcCC---------------------------eeCHHHc---------ccccCCccceEECCCCccccccccc----
Confidence 55543211 1111111 122 57788888776432222110
Q ss_pred HHHhhhh--ccccccEEEEecCCCCcccCccccC---CCCccEEEEccCCCccc--------CC--Ccc--CCCCccEEE
Q 035893 336 QQQQLCE--LSCRLEYLKLSNCEGLVKLPQSSLS---LSSLREIEICKCSSLVS--------FP--EVA--LPSKLKKIQ 398 (755)
Q Consensus 336 ~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~---l~~L~~L~l~~~~~l~~--------~~--~~~--~l~~L~~L~ 398 (755)
+..... ....|+.|++++|.....++..+.. .++++.|.+..+..-.. .. .+. ..++|++|+
T Consensus 194 -~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 194 -WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp -CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred -hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 000000 0024899999988766666554433 25677777763321111 10 111 147899999
Q ss_pred eccCCCCcccchhhhccCCCCccEEEeccCCccccccccc--CCCCCcEEeeeCCcCCCCCcccccccccCCCccccccc
Q 035893 399 ISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQ--LPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSY 476 (755)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 476 (755)
+++|......+..+ ..+++|+.|++++ +.++.++... ..++|++|+++++. ++.+. +..+..++
T Consensus 273 Ls~n~l~~~~~~~~--~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~----------~~~~~~l~ 338 (844)
T 3j0a_A 273 LSHGFVFSLNSRVF--ETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNL-LGELY----------SSNFYGLP 338 (844)
T ss_dssp CTTCCCCEECSCCS--SSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCC-CSCCC----------SCSCSSCT
T ss_pred CCCCcccccChhhh--hcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCC-CCccC----------HHHhcCCC
Confidence 99988555444444 7888999999988 4676665442 35678888888864 33322 12333456
Q ss_pred cccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCC
Q 035893 477 LLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGG 556 (755)
Q Consensus 477 ~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 556 (755)
+|+.|+++++ .+..+ + +. .++.+ ++|+.|++++|.... +..+++|+.|++++| .+..+|..
T Consensus 339 ~L~~L~L~~N-~i~~~-~--------~~-~~~~l-~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N-~l~~l~~~- 399 (844)
T 3j0a_A 339 KVAYIDLQKN-HIAII-Q--------DQ-TFKFL-EKLQTLDLRDNALTT-----IHFIPSIPDIFLSGN-KLVTLPKI- 399 (844)
T ss_dssp TCCEEECCSC-CCCCC-C--------SS-CSCSC-CCCCEEEEETCCSCC-----CSSCCSCSEEEEESC-CCCCCCCC-
T ss_pred CCCEEECCCC-CCCcc-C--------hh-hhcCC-CCCCEEECCCCCCCc-----ccCCCCcchhccCCC-Cccccccc-
Confidence 7777776664 23321 1 11 12333 689999999986542 334888999999998 55566653
Q ss_pred CCCCCceeEEeccCcCcccccc--cCCCCCCcceeEeCCc-CCCCc--cCCCCCCceeeEeecCCcccchhhhh-cCcCc
Q 035893 557 LPCAKLRTLKIYDCKRLKALPK--GLHNLSTLQYLTIGGA-LPSLE--EEDGLPTNLHFLKIEGNMEIWKSMIE-RGRGF 630 (755)
Q Consensus 557 ~~l~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~ls~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l 630 (755)
..+++.|++++|.. ..++. .+.++++|+.|++++| +.... .....+++|++|++++|.+....... .+..+
T Consensus 400 --~~~l~~L~ls~N~l-~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 400 --NLTANLIHLSENRL-ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp --CTTCCEEECCSCCC-CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred --ccccceeecccCcc-ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 45789999999884 33322 3468899999999988 33222 23455789999999999876432211 12457
Q ss_pred CCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCC
Q 035893 631 HRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKG 710 (755)
Q Consensus 631 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 710 (755)
.++++|++|++++| .+..++.. .+..+++|++|+++++ .++.+|+.... ++|+.|++++| .++.+++..
T Consensus 477 ~~l~~L~~L~Ls~N--~l~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls~N-~l~~~~~~~ 545 (844)
T 3j0a_A 477 EGLSHLQVLYLNHN--YLNSLPPG------VFSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDISRN-QLLAPNPDV 545 (844)
T ss_dssp SCBCCEECCCCCHH--HHTTCCTT------SSSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEEEE-CCCCCCSCC
T ss_pred cCcccccEEECCCC--cccccChh------HccchhhhheeECCCC-CCCccChhhhh-ccccEEECCCC-cCCCCChhH
Confidence 88999999999984 44444432 2467899999999994 78888764333 89999999999 567666644
Q ss_pred CcccccceeecCCcchh
Q 035893 711 LPSSLLRLNIAGCPLIE 727 (755)
Q Consensus 711 ~~~~L~~L~i~~c~~l~ 727 (755)
+.+|+.|++++||...
T Consensus 546 -~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 546 -FVSLSVLDITHNKFIC 561 (844)
T ss_dssp -CSSCCEEEEEEECCCC
T ss_pred -hCCcCEEEecCCCccc
Confidence 4589999999987543
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=298.50 Aligned_cols=500 Identities=13% Similarity=0.072 Sum_probs=295.6
Q ss_pred CCcceEEEeeeCCCcC-CCCcCCCCCCCccEEEEecCCCCCcCC--CCCCCCCcceEeecccccceeeCccccCCCCCCC
Q 035893 102 KNLEQFGICGYGGTKF-PTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIP 178 (755)
Q Consensus 102 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~lp--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 178 (755)
+++++|+++++.+..+ |..+. .+++|++|++++|.....++ .++++++|++|+++++ .+..+....++.
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~----- 95 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQG----- 95 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCS-----
T ss_pred CCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccC-----
Confidence 4555555555555443 23332 35555555555554444442 3555555555555553 233332222221
Q ss_pred CCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCC----CCCCCccEEEeccCcccccc---CCCC
Q 035893 179 FPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFP----EHLPALEMLVIEECEELSIS---ITSL 251 (755)
Q Consensus 179 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l~~~---~~~l 251 (755)
+++|++|+++++.--....... .+..+++|++|++++|. +++..+ ..+++|++|++++|..-... +..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~---~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDG---YFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTC---CCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred CcccCEeeCcCCCCCcccccCc---cccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 5555555555553111010000 13455556666665554 332222 23455555555555432211 1112
Q ss_pred --CccceEEEcCCCCceeec-ccCCC------CCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccC
Q 035893 252 --PALCKMEIGGCKKVVWRS-ATDHL------GSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSC 322 (755)
Q Consensus 252 --~~L~~L~l~~~~~~~~~~-~~~~~------~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~ 322 (755)
++|+.|++.++....... ....+ .+|+.|+++++.- .+.++..+.+. ....+++.+.+..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l----~~~~~~~~~~~------l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW----TVDITGNFSNA------ISKSQAFSLILAHH 241 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS----STTTTSGGGGT------SCSCCBSEEECCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC----chhHHHHHHhh------cCcccccceecccc
Confidence 455555555543222110 00111 1366777665432 22222211110 11234445554411
Q ss_pred --------CCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC-CccCCCC
Q 035893 323 --------PTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSK 393 (755)
Q Consensus 323 --------~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~ 393 (755)
.+++......+.. -.+++|+.|++++|...+..+..+..+++|+.|++++|......+ .+..+++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~------l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAG------LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTT------TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred cccccccccccCCCChhhhhc------cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence 1122211111100 113789999999998777777888999999999999996544433 2456899
Q ss_pred ccEEEeccCCCCcccchhhhccCCCCccEEEeccCCccccccccc--CCCCCcEEeeeCCcCCCCCcccccccccCCCcc
Q 035893 394 LKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQ--LPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSR 471 (755)
Q Consensus 394 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~ 471 (755)
|++|++++|......+..+ ..+++|+.|++++| .++.++... ..++|+.|+++++. ++.+.
T Consensus 316 L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~------------- 378 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH------------- 378 (844)
T ss_dssp CCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCS-------------
T ss_pred CCEEECCCCCCCccCHHHh--cCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCccc-------------
Confidence 9999999998554445544 78899999999984 677766543 25667777777753 22211
Q ss_pred ccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCc
Q 035893 472 RYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVS 551 (755)
Q Consensus 472 ~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 551 (755)
. .++|+.|++++|... .+|. ...+++.|++++| .+..
T Consensus 379 -------------------------------------~-~~~L~~L~l~~N~l~-~l~~---~~~~l~~L~ls~N-~l~~ 415 (844)
T 3j0a_A 379 -------------------------------------F-IPSIPDIFLSGNKLV-TLPK---INLTANLIHLSEN-RLEN 415 (844)
T ss_dssp -------------------------------------S-CCSCSEEEEESCCCC-CCCC---CCTTCCEEECCSC-CCCS
T ss_pred -------------------------------------C-CCCcchhccCCCCcc-cccc---cccccceeecccC-cccc
Confidence 1 258899999998655 4443 2578999999998 5555
Q ss_pred cCC--CCCCCCCceeEEeccCcCcccccc-cCCCCCCcceeEeCCc-CCCCc------cCCCCCCceeeEeecCCcccch
Q 035893 552 FPE--GGLPCAKLRTLKIYDCKRLKALPK-GLHNLSTLQYLTIGGA-LPSLE------EEDGLPTNLHFLKIEGNMEIWK 621 (755)
Q Consensus 552 ~~~--~~~~l~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~ls~~-~~~l~------~~~~~~~~L~~L~l~~~~~~~~ 621 (755)
++. .+..+++|+.|++++|......+. .+..+++|+.|++++| +.... ..+..+++|++|++++|.+...
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence 443 234689999999999986543322 4567899999999988 22111 3466789999999999988765
Q ss_pred hhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 622 SMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 622 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
.+ ..+.++++|++|++++| .+..++... ..++|+.|+++++ .++.+++. .+++|+.|++++|+
T Consensus 496 ~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~--------~~~~L~~L~Ls~N-~l~~~~~~--~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 496 PP----GVFSHLTALRGLSLNSN--RLTVLSHND--------LPANLEILDISRN-QLLAPNPD--VFVSLSVLDITHNK 558 (844)
T ss_dssp CT----TSSSSCCSCSEEEEESC--CCSSCCCCC--------CCSCCCEEEEEEE-CCCCCCSC--CCSSCCEEEEEEEC
T ss_pred Ch----hHccchhhhheeECCCC--CCCccChhh--------hhccccEEECCCC-cCCCCChh--HhCCcCEEEecCCC
Confidence 55 56899999999999984 566666544 3489999999995 66665542 35699999999997
Q ss_pred CCCCC
Q 035893 702 KLKYF 706 (755)
Q Consensus 702 ~l~~l 706 (755)
..-.-
T Consensus 559 ~~C~c 563 (844)
T 3j0a_A 559 FICEC 563 (844)
T ss_dssp CCCSS
T ss_pred ccccc
Confidence 54443
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.6e-30 Score=289.09 Aligned_cols=189 Identities=18% Similarity=0.186 Sum_probs=108.0
Q ss_pred CCcceEEEccCccchhhhhhc-CCCCCcCeEEEecCCCCCccC---CCCCCCCCceeEEeccCcCccccc---ccCCCCC
Q 035893 512 PSLKSLRVNFCSKLELIAERL-DNNTSLETISISNCENLVSFP---EGGLPCAKLRTLKIYDCKRLKALP---KGLHNLS 584 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~~~~l~~~~---~~l~~l~ 584 (755)
++|+.|++++|.. +.+|..+ ..+++|++|++++|...+.+| ..+..+++|++|++++|.. +.++ ..+..++
T Consensus 310 ~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCT
T ss_pred ccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCC
Confidence 4666666666643 3444433 356667777776664433332 2344566677777766653 2222 2356666
Q ss_pred CcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCC
Q 035893 585 TLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALP 663 (755)
Q Consensus 585 ~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 663 (755)
+|++|++++| +..++..+..+++|++|++++|.+..... ...++|++|++++| .+..++ .
T Consensus 388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-------~~~~~L~~L~Ls~N--~l~~~~----------~ 448 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-------CIPQTLEVLDVSNN--NLDSFS----------L 448 (549)
T ss_dssp TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT-------TSCTTCSEEECCSS--CCSCCC----------C
T ss_pred CCCEEECCCCCCccCChhhcccccccEEECCCCCcccccc-------hhcCCceEEECCCC--Chhhhc----------c
Confidence 6777777666 33444445556667777777766543211 11246677777663 222222 2
Q ss_pred CCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCc
Q 035893 664 LPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCP 724 (755)
Q Consensus 664 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 724 (755)
.+++|++|+++++ .++.+|. ...+++|++|++++| .++.+++..+ +++|+.|++++||
T Consensus 449 ~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 449 FLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 4566777777774 5666664 455677777777777 5566655433 5677777777766
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.8e-30 Score=287.46 Aligned_cols=197 Identities=21% Similarity=0.187 Sum_probs=113.2
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCcc---CCCCCCCCCceeEEeccCcCcccccccCCCCCCcce
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSF---PEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQY 588 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 588 (755)
++|+.|++++|......+. ..+++|++|++++|. +... +..+..+++|++|++++|... .++..+..+++|+.
T Consensus 325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 400 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccc-cccccccccCCCCE
Confidence 4566666666654443332 456666666666663 2222 333445566666666666533 33333566666666
Q ss_pred eEeCCc-CCCCc--cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCC
Q 035893 589 LTIGGA-LPSLE--EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLP 665 (755)
Q Consensus 589 L~ls~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 665 (755)
|++++| +.... ..+..+++|++|++++|.+....+ ..+.++++|++|++++|......+|.. +..+
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~p~~-------~~~l 469 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDI-------FTEL 469 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT----TTTTTCTTCCEEECTTCEEGGGEECSC-------CTTC
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccch----hhhhcCCcCcEEECcCCcCccccchhh-------hhcc
Confidence 666665 22221 234556667777777776555433 446667777777777642111234422 2456
Q ss_pred CccceEecccCCCCccc-cccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCcc
Q 035893 666 ASLTSLTIFSFPSLERL-SSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCPL 725 (755)
Q Consensus 666 ~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 725 (755)
++|++|++++| .++.+ |..+..+++|++|++++| .++.+++..+ +++|+.|++++|+.
T Consensus 470 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 470 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 77777777775 44444 556677777777777777 5666665444 56777777777653
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.2e-29 Score=279.98 Aligned_cols=182 Identities=19% Similarity=0.130 Sum_probs=94.2
Q ss_pred CcceEEEccCccchhh--hhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccccc-ccCCCCCCccee
Q 035893 513 SLKSLRVNFCSKLELI--AERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALP-KGLHNLSTLQYL 589 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L 589 (755)
+|++|++++|...... +..+..+++|+.|++++| .+..++..+..+++|++|++++|......+ ..+.++++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 4444444444333221 333444555555555554 223333334444555555555554333322 234455555555
Q ss_pred EeCCc-CCCC-ccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccc-cccccccCCCCCCCC
Q 035893 590 TIGGA-LPSL-EEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSF-PLEDKRLGTALPLPA 666 (755)
Q Consensus 590 ~ls~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 666 (755)
++++| +... +..+..+++|++|++++|.+.... +|..+..+++|++|++++| .+..+ |.. +..++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n--~l~~~~~~~-------~~~l~ 494 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQC--QLEQLSPTA-------FNSLS 494 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTS--CCCEECTTT-------TTTCT
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCC--ccccCChhh-------hhccc
Confidence 55554 1111 123344556666666666544211 1145667777777777763 22232 222 24567
Q ss_pred ccceEecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCC
Q 035893 667 SLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 667 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
+|++|++++| .++.+++ .+..+++|++|++++|+.....|.
T Consensus 495 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 7777777774 5566554 678889999999999965444443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.9e-29 Score=286.32 Aligned_cols=337 Identities=15% Similarity=0.143 Sum_probs=182.5
Q ss_pred ccCCCcCeEEEccCCCcch--hhhhhHHHHHHhhhhccccccEEEEecCCCCcccCc--cccCCCCccEEEEccCCCccc
Q 035893 309 NNICSLKRLVITSCPTLQS--LVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQ--SSLSLSSLREIEICKCSSLVS 384 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~ 384 (755)
.++++|+.|+++++..++. ++....... ....+++|++|++++|... .+|. .++.+++|++|++++|.....
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~---~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALA---DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHH---HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhh---ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 5567788888887754543 332211100 1123488999999999766 8888 899999999999999965558
Q ss_pred CCCccCCCCccEEEeccCCCCcccchhhhccCCCC-ccEEEeccCCcccccccccC-C--CCCcEEeeeCCcCCCCCccc
Q 035893 385 FPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSS-LEILIILYCNSLTYIAEVQL-P--PSLKQLDIYNCDNIRTLTVE 460 (755)
Q Consensus 385 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~-~--~~L~~L~l~~~~~L~~l~~~ 460 (755)
+|.+..+++|++|++++|. +..+|..+ ..+++ |++|++++| .++.+|.... . ++|++|+++++.--..++..
T Consensus 346 ip~~~~l~~L~~L~L~~N~-l~~lp~~l--~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LPAFGSEIKLASLNLAYNQ-ITEIPANF--CGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CCCCEEEEEESEEECCSSE-EEECCTTS--EEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hhhhCCCCCCCEEECCCCc-cccccHhh--hhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 8866678999999999988 44777665 67777 899988884 4555553211 1 13444444443211111100
Q ss_pred ccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccC-CCCCcceEEEccCccchhhhhhcCCCCCcC
Q 035893 461 EGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGN-LPPSLKSLRVNFCSKLELIAERLDNNTSLE 539 (755)
Q Consensus 461 ~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 539 (755)
+.....+. -.++|++|++++|......+..+..+++|+
T Consensus 422 -----------------------------------------l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 422 -----------------------------------------FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp -----------------------------------------SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred -----------------------------------------hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 00000000 002455555555544322122233355555
Q ss_pred eEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCC--CCCceeeEeecCC
Q 035893 540 TISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDG--LPTNLHFLKIEGN 616 (755)
Q Consensus 540 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~--~~~~L~~L~l~~~ 616 (755)
.|++++| .+..+|....... ...+.++++|+.|++++| +..++.... .+++|++|++++|
T Consensus 461 ~L~Ls~N-~l~~i~~~~~~~~----------------~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 461 SINLMGN-MLTEIPKNSLKDE----------------NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp EEECCSS-CCSBCCSSSSEET----------------TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS
T ss_pred EEECCCC-CCCCcCHHHhccc----------------cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC
Confidence 5555555 2234443322211 000011224555555544 222222222 4555666666666
Q ss_pred cccchhhhhcCcCcCCCCCccEEEEeccC-----CCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCC
Q 035893 617 MEIWKSMIERGRGFHRFSSLRELIIRGCD-----DDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQN 691 (755)
Q Consensus 617 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 691 (755)
.+.. .+ ..+..+++|++|++++|. .....+|... ..+++|++|++++| .++.+|..+. ++
T Consensus 524 ~l~~-ip----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-------~~l~~L~~L~Ls~N-~l~~ip~~~~--~~ 588 (636)
T 4eco_A 524 SFSK-FP----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-------TLCPSLTQLQIGSN-DIRKVNEKIT--PN 588 (636)
T ss_dssp CCSS-CC----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG-------GGCSSCCEEECCSS-CCCBCCSCCC--TT
T ss_pred CCCC-cC----hhhhcCCCCCEEECCCCcccccCcccccChHHH-------hcCCCCCEEECCCC-cCCccCHhHh--Cc
Confidence 5554 22 345667777777776532 1123344322 45677777777774 4577776544 78
Q ss_pred ccEEeeCCCCCCCCCCCCCC----------cccccceeecCCcchh
Q 035893 692 LTQLDLGDCPKLKYFPEKGL----------PSSLLRLNIAGCPLIE 727 (755)
Q Consensus 692 L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~i~~c~~l~ 727 (755)
|++|++++|+ +..++..++ +...+..++.+|+.|+
T Consensus 589 L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 589 ISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 8888888883 444443222 2234556777887653
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.1e-29 Score=275.48 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=122.2
Q ss_pred CcceEEEccCccchhhh-hhcCCC---CCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcce
Q 035893 513 SLKSLRVNFCSKLELIA-ERLDNN---TSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQY 588 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~-~~l~~l---~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 588 (755)
+|+.+++++|.. .+| ..+..+ ++|+.|++++|.. ...+. ...+++|++|++++|.....+|..+..+++|++
T Consensus 277 ~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 277 ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-ccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 455555555544 222 222222 4566666666632 22221 134666777777777655556666667777777
Q ss_pred eEeCCc-CCCCc---cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCC
Q 035893 589 LTIGGA-LPSLE---EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPL 664 (755)
Q Consensus 589 L~ls~~-~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (755)
|++++| +..+. ..+..+++|++|++++|.+....+. ..+..+++|++|++++|. -...++.. .
T Consensus 353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~---------l 419 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLSLNMSSNI-LTDTIFRC---------L 419 (520)
T ss_dssp EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG---CSCCCCTTCCEEECCSSC-CCGGGGGS---------C
T ss_pred EEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc---chhccCccCCEEECcCCC-CCcchhhh---------h
Confidence 777766 22211 2355667777777777776652221 346777888888888742 22333321 2
Q ss_pred CCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCcc
Q 035893 665 PASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCPL 725 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 725 (755)
.++|++|++++| .++.+|..+..+++|++|++++| .++.+|...+ +++|++|++++||.
T Consensus 420 ~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 420 PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 268888888884 77788887778899999999998 6778887544 67889999988874
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.8e-28 Score=272.59 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=132.2
Q ss_pred CCcceEEEccCccchhhhh---hcCCCCCcCeEEEecCCCCCccC---CCCCCCCCceeEEeccCcCcccccccCCCCCC
Q 035893 512 PSLKSLRVNFCSKLELIAE---RLDNNTSLETISISNCENLVSFP---EGGLPCAKLRTLKIYDCKRLKALPKGLHNLST 585 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~ 585 (755)
++|++|++++|...+.+|. .+..+++|+.|++++| .++.++ ..+..+++|++|++++|. +..+|..+..+++
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~ 411 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEK 411 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTT
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhccccc
Confidence 6899999999988776643 3678899999999998 455543 235668899999999997 4578888888999
Q ss_pred cceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCC
Q 035893 586 LQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPL 664 (755)
Q Consensus 586 L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (755)
|++|++++| +..++ ...+++|++|++++|.+... ...+++|++|++++| .++.+|... .
T Consensus 412 L~~L~Ls~N~l~~l~--~~~~~~L~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N--~l~~ip~~~--------~ 471 (549)
T 2z81_A 412 MRFLNLSSTGIRVVK--TCIPQTLEVLDVSNNNLDSF--------SLFLPRLQELYISRN--KLKTLPDAS--------L 471 (549)
T ss_dssp CCEEECTTSCCSCCC--TTSCTTCSEEECCSSCCSCC--------CCCCTTCCEEECCSS--CCSSCCCGG--------G
T ss_pred ccEEECCCCCccccc--chhcCCceEEECCCCChhhh--------cccCChhcEEECCCC--ccCcCCCcc--------c
Confidence 999999988 33322 23357999999999987642 357899999999985 555777533 6
Q ss_pred CCccceEecccCCCCccccc-cccCCCCccEEeeCCCCC
Q 035893 665 PASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPK 702 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 702 (755)
+++|++|+++++ .++.+++ .+..+++|++|++++|+.
T Consensus 472 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 472 FPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 889999999995 6666665 689999999999999964
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.8e-28 Score=278.88 Aligned_cols=327 Identities=16% Similarity=0.150 Sum_probs=194.7
Q ss_pred ccCCCcCeEEEccCCCcch--hhhhhHHHHHHhhhhccccccEEEEecCCCCcccCc--cccCCCCccEEEEccCCCccc
Q 035893 309 NNICSLKRLVITSCPTLQS--LVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQ--SSLSLSSLREIEICKCSSLVS 384 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~ 384 (755)
.++++|+.|+++++..++. ++..... +......+++|++|++++|... .+|. .++.+++|+.|++++|. +..
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~--L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~ 587 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTR--LADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRH 587 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHH--HHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCB
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHh--hhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-ccc
Confidence 5667888888888754543 4332111 1111234479999999999876 8888 89999999999999996 448
Q ss_pred CCCccCCCCccEEEeccCCCCcccchhhhccCCCC-ccEEEeccCCcccccccccC-C--CCCcEEeeeCCcCCCCCccc
Q 035893 385 FPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSS-LEILIILYCNSLTYIAEVQL-P--PSLKQLDIYNCDNIRTLTVE 460 (755)
Q Consensus 385 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~-~--~~L~~L~l~~~~~L~~l~~~ 460 (755)
+|.+..+++|++|++++|... .+|..+ ..+++ |+.|++++| .++.+|.... . ++|+.|+++++.--..++.
T Consensus 588 lp~~~~L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~- 662 (876)
T 4ecn_A 588 LEAFGTNVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN- 662 (876)
T ss_dssp CCCCCTTSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS-
T ss_pred chhhcCCCcceEEECcCCccc-cchHHH--hhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCcccc-
Confidence 887778999999999999854 777665 67888 999999984 5666664311 1 2366666665432111110
Q ss_pred ccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCC-CCCcceEEEccCccchhhhhh-cCCCCCc
Q 035893 461 EGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNL-PPSLKSLRVNFCSKLELIAER-LDNNTSL 538 (755)
Q Consensus 461 ~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~-l~~l~~L 538 (755)
++ . ..+.+ .++|+.|++++|... .+|.. +..+++|
T Consensus 663 --------------------------------l~-----~-----~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L 699 (876)
T 4ecn_A 663 --------------------------------IS-----C-----SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI 699 (876)
T ss_dssp --------------------------------CS-----S-----CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC
T ss_pred --------------------------------ch-----h-----hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC
Confidence 00 0 00100 146788888887665 44443 3467888
Q ss_pred CeEEEecCCCCCccCCCCCCC--------CCceeEEeccCcCcccccccCC--CCCCcceeEeCCcCCCCccCCCCCCce
Q 035893 539 ETISISNCENLVSFPEGGLPC--------AKLRTLKIYDCKRLKALPKGLH--NLSTLQYLTIGGALPSLEEEDGLPTNL 608 (755)
Q Consensus 539 ~~L~l~~~~~l~~~~~~~~~l--------~~L~~L~l~~~~~l~~~~~~l~--~l~~L~~L~ls~~~~~l~~~~~~~~~L 608 (755)
+.|++++| .+..+|...... ++|+.|++++|.. ..+|..+. .+++|+.|++++|
T Consensus 700 ~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N-------------- 763 (876)
T 4ecn_A 700 STIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYN-------------- 763 (876)
T ss_dssp SEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSS--------------
T ss_pred CEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCC-ccchHHhhhccCCCcCEEEeCCC--------------
Confidence 88888887 455666644432 2666666666653 35555443 5555555555544
Q ss_pred eeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccC-----CCcccccccccccCCCCCCCCccceEecccCCCCcccc
Q 035893 609 HFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCD-----DDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLS 683 (755)
Q Consensus 609 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 683 (755)
.+.. . |..+..+++|+.|++++|. .....+|... ..+++|++|++++| .++.+|
T Consensus 764 --------~L~~-l----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l-------~~L~~L~~L~Ls~N-~L~~Ip 822 (876)
T 4ecn_A 764 --------CFSS-F----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-------TTCPSLIQLQIGSN-DIRKVD 822 (876)
T ss_dssp --------CCSS-C----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG-------GGCSSCCEEECCSS-CCCBCC
T ss_pred --------CCCc-c----chhhhcCCCCCEEECCCCCCcccccccccChHHH-------hcCCCCCEEECCCC-CCCccC
Confidence 4333 1 1334556666666665521 1122333222 35666666666664 446676
Q ss_pred ccccCCCCccEEeeCCCCCCCCCCCCCC----------cccccceeecCCcchh
Q 035893 684 SSIVDLQNLTQLDLGDCPKLKYFPEKGL----------PSSLLRLNIAGCPLIE 727 (755)
Q Consensus 684 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~i~~c~~l~ 727 (755)
..+. ++|+.|++++|+ +..+....+ +..-+..++.+|+.+.
T Consensus 823 ~~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp SCCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred Hhhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 6544 577777777774 444433222 1222344567777653
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.9e-27 Score=269.85 Aligned_cols=312 Identities=18% Similarity=0.206 Sum_probs=223.3
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcc--cCCC-ccC------CCCccEEEeccCCCCcccch--hhh
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLV--SFPE-VAL------PSKLKKIQISYCDALKSLPE--AWM 413 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~-~~~------l~~L~~L~l~~~~~~~~~~~--~~~ 413 (755)
++|++|++++|...+.+|..++++++|++|++++|..+. .+|. ++. +++|++|++++|... .+|. .+
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l- 326 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL- 326 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-
Confidence 778888888888888888888888888888888886333 3443 222 388888888888744 7776 44
Q ss_pred ccCCCCccEEEeccCCccc-ccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCcccc
Q 035893 414 CHTNSSLEILIILYCNSLT-YIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCI 492 (755)
Q Consensus 414 ~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l 492 (755)
..+++|++|++++| .++ .+|....+++|++|+++++. ++.++.
T Consensus 327 -~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~--------------------------------- 370 (636)
T 4eco_A 327 -QKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQ-ITEIPA--------------------------------- 370 (636)
T ss_dssp -TTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCSSE-EEECCT---------------------------------
T ss_pred -ccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCCCc-cccccH---------------------------------
Confidence 77888888888884 455 66522334456666665543 111110
Q ss_pred ccCCCcchhhhhhhccCCCCC-cceEEEccCccchhhhhhcCCCC--CcCeEEEecCCCCCccCCCCC-------CCCCc
Q 035893 493 FSKNELPATLESLEVGNLPPS-LKSLRVNFCSKLELIAERLDNNT--SLETISISNCENLVSFPEGGL-------PCAKL 562 (755)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~~~~~~~-------~l~~L 562 (755)
.++.+ ++ |++|++++|... .+|..+...+ +|+.|++++|...+..|..+. .+++|
T Consensus 371 -------------~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 371 -------------NFCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp -------------TSEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred -------------hhhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 01222 35 888888888755 6676666544 888999988866666666665 67789
Q ss_pred eeEEeccCcCccccccc-CCCCCCcceeEeCCc-CCCCcc-CCC-------CCCceeeEeecCCcccchhhhhcCcCcC-
Q 035893 563 RTLKIYDCKRLKALPKG-LHNLSTLQYLTIGGA-LPSLEE-EDG-------LPTNLHFLKIEGNMEIWKSMIERGRGFH- 631 (755)
Q Consensus 563 ~~L~l~~~~~l~~~~~~-l~~l~~L~~L~ls~~-~~~l~~-~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~l~- 631 (755)
++|++++|... .+|.. +..+++|+.|++++| +..++. .+. .+++|++|++++|.+... + ..+.
T Consensus 436 ~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p----~~~~~ 509 (636)
T 4eco_A 436 SSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-S----DDFRA 509 (636)
T ss_dssp EEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-C----GGGST
T ss_pred CEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-C----hhhhh
Confidence 99999998854 56554 456889999999887 333332 111 123999999999998742 2 3454
Q ss_pred -CCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEeccc------CCCCccccccccCCCCccEEeeCCCCCCC
Q 035893 632 -RFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFS------FPSLERLSSSIVDLQNLTQLDLGDCPKLK 704 (755)
Q Consensus 632 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 704 (755)
.+++|++|++++| .+..+|... ..+++|++|++++ +.....+|..+..+++|++|++++| .++
T Consensus 510 ~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~ 579 (636)
T 4eco_A 510 TTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIR 579 (636)
T ss_dssp TTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCC
T ss_pred ccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCC
Confidence 8999999999994 344477655 5789999999954 4446778889999999999999999 569
Q ss_pred CCCCCCCcccccceeecCCcch
Q 035893 705 YFPEKGLPSSLLRLNIAGCPLI 726 (755)
Q Consensus 705 ~l~~~~~~~~L~~L~i~~c~~l 726 (755)
.+|.. +.++|+.|++++|+..
T Consensus 580 ~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 580 KVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp BCCSC-CCTTCCEEECCSCTTC
T ss_pred ccCHh-HhCcCCEEECcCCCCc
Confidence 99886 4489999999999743
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.6e-26 Score=262.80 Aligned_cols=496 Identities=17% Similarity=0.128 Sum_probs=267.9
Q ss_pred CCcceEEEeeeCCCcCCC-CcCCCCCCCccEEEEecCCCCCcCC--CCCCCCCcceEeecccccceeeCccccCCCCCCC
Q 035893 102 KNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIP 178 (755)
Q Consensus 102 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~lp--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 178 (755)
+++++|+|+++.++.+|. .+. .+++|++|+|++|. ++.+| .++++++|++|+|+++ .++.++...++.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~----- 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG----- 122 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTT-----
T ss_pred cCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcC-----
Confidence 567788888777777654 342 47788888888765 55554 4777888888888774 567776654433
Q ss_pred CCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccc-cCC---CCCCCccEEEeccCccccccCCCCCcc
Q 035893 179 FPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQG-TFP---EHLPALEMLVIEECEELSISITSLPAL 254 (755)
Q Consensus 179 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~p---~~l~~L~~L~l~~~~~l~~~~~~l~~L 254 (755)
+++|++|++.++. ++.... ..++.+++|++|++++|. +++ .+| ..+++|++|++++|.........+..+
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLEN----FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTT----CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCEEECCCCc-CCCCCh----hhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 7778888777764 222211 125667778888887775 432 233 235667777776664433222221111
Q ss_pred c-------eEEEcCCCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcch
Q 035893 255 C-------KMEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQS 327 (755)
Q Consensus 255 ~-------~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~ 327 (755)
. .++++........... .....+..+.+.+...-..
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~-------------------------------------~~~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGA-------------------------------------FKEIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTT-------------------------------------TTTCEEEEEEEESCCSSHH
T ss_pred hhhhhhhhhhhcccCcccccCccc-------------------------------------ccchhhhhhhhhccccccc
Confidence 1 1222211111000000 1111223344433211111
Q ss_pred hhhhhHHHHHHhhhhccccccEEEEecCCC--Cc----ccCccccCCCCccEEEEccCCCc---cc-CCCccCCCCccEE
Q 035893 328 LVAEEEKDQQQQLCELSCRLEYLKLSNCEG--LV----KLPQSSLSLSSLREIEICKCSSL---VS-FPEVALPSKLKKI 397 (755)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~----~~~~~~~~l~~L~~L~l~~~~~l---~~-~~~~~~l~~L~~L 397 (755)
+.. .....+..++...+..+.. .. .....+..+..+....+..+... .. ........+++.+
T Consensus 240 ~~~--------~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 240 VMK--------TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp HHH--------HHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred ccc--------hhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence 100 0111124444444432211 11 11123334444555444433211 11 1123336677777
Q ss_pred EeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCcccccccc
Q 035893 398 QISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYL 477 (755)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 477 (755)
.+.++.... +... ....+|+.|++.+| .+..++.. ....++.+++..+..-....
T Consensus 312 ~~~~~~~~~-~~~~---~~~~~L~~L~l~~~-~~~~~~~~-~l~~L~~l~l~~n~~~~~~~------------------- 366 (635)
T 4g8a_A 312 SLVSVTIER-VKDF---SYNFGWQHLELVNC-KFGQFPTL-KLKSLKRLTFTSNKGGNAFS------------------- 366 (635)
T ss_dssp EEESCEEEE-CGGG---GSCCCCSEEEEESC-EESSCCCC-BCTTCCEEEEESCCSCCBCC-------------------
T ss_pred ccccccccc-cccc---ccchhhhhhhcccc-cccCcCcc-cchhhhhcccccccCCCCcc-------------------
Confidence 777766332 2221 44566777777764 34443322 22346666555533111100
Q ss_pred ccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccch--hhhhhcCCCCCcCeEEEecCCCCCccCCC
Q 035893 478 LEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLE--LIAERLDNNTSLETISISNCENLVSFPEG 555 (755)
Q Consensus 478 L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 555 (755)
...+ ++|+.+++++|.... ..+.....+.+|+.+++..+. ....+..
T Consensus 367 -----------------------------~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~ 415 (635)
T 4g8a_A 367 -----------------------------EVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSN 415 (635)
T ss_dssp -----------------------------CCBC-TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSC
T ss_pred -----------------------------cccc-cccccchhhccccccccccccchhhhhhhhhhhccccc-ccccccc
Confidence 0111 456666666665432 223344456677777777663 3344555
Q ss_pred CCCCCCceeEEeccCcCccccc-ccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCC
Q 035893 556 GLPCAKLRTLKIYDCKRLKALP-KGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHR 632 (755)
Q Consensus 556 ~~~l~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 632 (755)
+..+++|+.+++.++......+ ..+..+++++.++++++ +.... ..+..+++|++|++++|.......+ ..+..
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~ 492 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTE 492 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhh
Confidence 6667777777777666544443 24566777777777766 22222 4456667788888887765443222 46778
Q ss_pred CCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCCCC
Q 035893 633 FSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEKGL 711 (755)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~ 711 (755)
+++|++|++++| .+..++. ..+..+++|++|+++++ .++.+++ .+..+++|++|++++| +++.+++..+
T Consensus 493 l~~L~~L~Ls~N--~L~~l~~------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l 562 (635)
T 4g8a_A 493 LRNLTFLDLSQC--QLEQLSP------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL 562 (635)
T ss_dssp CTTCCEEECTTS--CCCEECT------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCT
T ss_pred ccccCEEECCCC--ccCCcCh------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHH
Confidence 888888888873 3444432 22356788888888884 6777655 6788899999999999 6777766544
Q ss_pred ---cccccceeecCCcch
Q 035893 712 ---PSSLLRLNIAGCPLI 726 (755)
Q Consensus 712 ---~~~L~~L~i~~c~~l 726 (755)
+++|++|++++||--
T Consensus 563 ~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCCCTTCCEEECTTCCBC
T ss_pred HhhhCcCCEEEeeCCCCc
Confidence 468999999887743
No 20
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.8e-27 Score=257.85 Aligned_cols=297 Identities=26% Similarity=0.266 Sum_probs=123.0
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
++|++|++++|... .+| .++.+++|++|++++|. +..+|.. .++|++|++++|. +..++ .+ ..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~-l~~l~-~~--~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQ-LEELP-EL--QNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-CSSCC-CC--TTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCc-CcccCCC--cccccEEECcCCc-CCcCc-cc--cCCCCCCEEE
Confidence 45666666666543 355 46667777777777663 4444432 3567777777766 33344 22 5667777777
Q ss_pred eccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhh
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLES 504 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~ 504 (755)
+++ +.++.++. .+++|++|++++| .++.++ ....+++|+.++++++. ++.
T Consensus 202 l~~-N~l~~l~~--~~~~L~~L~l~~n-~l~~lp------------~~~~l~~L~~L~l~~N~-l~~------------- 251 (454)
T 1jl5_A 202 ADN-NSLKKLPD--LPLSLESIVAGNN-ILEELP------------ELQNLPFLTTIYADNNL-LKT------------- 251 (454)
T ss_dssp CCS-SCCSSCCC--CCTTCCEEECCSS-CCSSCC------------CCTTCTTCCEEECCSSC-CSS-------------
T ss_pred CCC-CcCCcCCC--CcCcccEEECcCC-cCCccc------------ccCCCCCCCEEECCCCc-CCc-------------
Confidence 766 34555542 3346666666665 233332 01122234444433321 111
Q ss_pred hhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCC
Q 035893 505 LEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLS 584 (755)
Q Consensus 505 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~ 584 (755)
+...+++|+.|++++|...+ +|.. +++|+.|++++| .+..++.. .++|++|++++|... .++.. .+
T Consensus 252 --l~~~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N~l~-~i~~~---~~ 317 (454)
T 1jl5_A 252 --LPDLPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSNEIR-SLCDL---PP 317 (454)
T ss_dssp --CCSCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS-CCSEESCC---CTTCCEEECCSSCCS-EECCC---CT
T ss_pred --ccccccccCEEECCCCcccc-cCcc---cCcCCEEECcCC-ccCcccCc---CCcCCEEECcCCcCC-cccCC---cC
Confidence 01122466666666664333 3331 356666666666 33333321 146666666666532 22211 13
Q ss_pred CcceeEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCC
Q 035893 585 TLQYLTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPL 664 (755)
Q Consensus 585 ~L~~L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (755)
+|+.|+++++ . +......+++|++|++++|.+... + . .+++|++|++++| .+..+|. .
T Consensus 318 ~L~~L~Ls~N-~-l~~lp~~~~~L~~L~L~~N~l~~l-p----~---~l~~L~~L~L~~N--~l~~l~~----------i 375 (454)
T 1jl5_A 318 SLEELNVSNN-K-LIELPALPPRLERLIASFNHLAEV-P----E---LPQNLKQLHVEYN--PLREFPD----------I 375 (454)
T ss_dssp TCCEEECCSS-C-CSCCCCCCTTCCEEECCSSCCSCC-C----C---CCTTCCEEECCSS--CCSSCCC----------C
T ss_pred cCCEEECCCC-c-cccccccCCcCCEEECCCCccccc-c----c---hhhhccEEECCCC--CCCcCCC----------C
Confidence 5666666655 1 111112245666666666654421 1 1 3456666666652 2222221 1
Q ss_pred CCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCc
Q 035893 665 PASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCP 724 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 724 (755)
+.++..|.. +.....+|. .+++|++|++++| .++.+|. +|++++.|++.+|.
T Consensus 376 p~~l~~L~~--n~~~~~i~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 376 PESVEDLRM--NSHLAEVPE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp CTTCCEEEC--CC-----------------------------------------------
T ss_pred hHHHHhhhh--ccccccccc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 223333332 223333442 2389999999999 5665544 57789999988875
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.4e-27 Score=260.03 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=60.3
Q ss_pred CCcceEEEccCccch--hhhhhcCCCCCcCeEEEecCCCCCccCCC-CCCCCCceeEEeccCcCcccccccCCCCCCcce
Q 035893 512 PSLKSLRVNFCSKLE--LIAERLDNNTSLETISISNCENLVSFPEG-GLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQY 588 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 588 (755)
++|++|++++|...+ .+|..+..+++|++|++++|.....+|.. +..+++|++|++++|...+.+|..+. ++|+.
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~ 425 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence 356666666665443 34455566666666666666433324443 34455666666666654444443332 45555
Q ss_pred eEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 589 LTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 589 L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
|++++| +..++.....+++|++|++++|++...+. ..+..+++|++|++++
T Consensus 426 L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD----GIFDRLTSLQKIWLHT 477 (520)
T ss_dssp EECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS
T ss_pred EECCCCcccccchhhhcCCCCCEEECCCCcCCccCH----HHhccCCcccEEECcC
Confidence 555544 22222222244444444444444432211 1234444444444444
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.9e-26 Score=263.04 Aligned_cols=311 Identities=16% Similarity=0.177 Sum_probs=214.3
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcc--cCCC--------ccCCCCccEEEeccCCCCcccch--hh
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLV--SFPE--------VALPSKLKKIQISYCDALKSLPE--AW 412 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~--------~~~l~~L~~L~l~~~~~~~~~~~--~~ 412 (755)
++|++|++++|...+.+|..++++++|+.|++++|..+. .+|. ...+++|++|++++|... .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 677777777777777777777778888888888775233 2332 223557888888887744 6666 44
Q ss_pred hccCCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCcccc
Q 035893 413 MCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCI 492 (755)
Q Consensus 413 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l 492 (755)
..+++|+.|++++| .++.+|....+++|+.|+++++. +..++..
T Consensus 570 --~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~-------------------------------- 613 (876)
T 4ecn_A 570 --QKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQ-IEEIPED-------------------------------- 613 (876)
T ss_dssp --TTCTTCCEEECTTS-CCCBCCCCCTTSEESEEECCSSC-CSCCCTT--------------------------------
T ss_pred --hcCCCCCEEECCCC-CcccchhhcCCCcceEEECcCCc-cccchHH--------------------------------
Confidence 67778888888773 45566633444556666666643 2222210
Q ss_pred ccCCCcchhhhhhhccCCCCC-cceEEEccCccchhhhhhcCCCCC--cCeEEEecCCCCCccCC---CCC--CCCCcee
Q 035893 493 FSKNELPATLESLEVGNLPPS-LKSLRVNFCSKLELIAERLDNNTS--LETISISNCENLVSFPE---GGL--PCAKLRT 564 (755)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~l~~~~~---~~~--~l~~L~~ 564 (755)
++.+ ++ |+.|++++|... .+|..+..++. |+.|++++|...+.+|. ... .+++|+.
T Consensus 614 --------------l~~l-~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 614 --------------FCAF-TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp --------------SCEE-CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred --------------Hhhc-cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 1122 34 888888888655 66666655543 88888888855444332 122 3458888
Q ss_pred EEeccCcCcccccccC-CCCCCcceeEeCCc-CCCCccC-CC-------CCCceeeEeecCCcccchhhhhcCcCcC--C
Q 035893 565 LKIYDCKRLKALPKGL-HNLSTLQYLTIGGA-LPSLEEE-DG-------LPTNLHFLKIEGNMEIWKSMIERGRGFH--R 632 (755)
Q Consensus 565 L~l~~~~~l~~~~~~l-~~l~~L~~L~ls~~-~~~l~~~-~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~l~--~ 632 (755)
|++++|... .+|..+ ..+++|+.|++++| +..++.. +. .+++|++|++++|.+... + ..+. .
T Consensus 678 L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p----~~l~~~~ 751 (876)
T 4ecn_A 678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-S----DDFRATT 751 (876)
T ss_dssp EECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-C----GGGSTTT
T ss_pred EEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-h----HHhhhcc
Confidence 999888854 666544 47888999999887 4444421 21 223899999999988732 2 3455 8
Q ss_pred CCCccEEEEeccCCCcccccccccccCCCCCCCCccceEeccc------CCCCccccccccCCCCccEEeeCCCCCCCCC
Q 035893 633 FSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFS------FPSLERLSSSIVDLQNLTQLDLGDCPKLKYF 706 (755)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 706 (755)
+++|+.|++++| .+..+|... ..+++|+.|++++ +.....+|..+..+++|++|++++| .++.+
T Consensus 752 l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~I 821 (876)
T 4ecn_A 752 LPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKV 821 (876)
T ss_dssp CTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC
T ss_pred CCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCcc
Confidence 999999999985 344466554 5789999999987 4446678889999999999999999 56999
Q ss_pred CCCCCcccccceeecCCcc
Q 035893 707 PEKGLPSSLLRLNIAGCPL 725 (755)
Q Consensus 707 ~~~~~~~~L~~L~i~~c~~ 725 (755)
|.. +.++|+.|++++|+.
T Consensus 822 p~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 822 DEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CSC-CCSSSCEEECCSCTT
T ss_pred CHh-hcCCCCEEECCCCCC
Confidence 986 557999999999985
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=6.1e-26 Score=254.77 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=66.5
Q ss_pred CcceEEEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCC--CCCCCCCcceEeecccccceeeCccccCCCCCCCCC
Q 035893 103 NLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFP 180 (755)
Q Consensus 103 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 180 (755)
..+++++++++.+.+|..+ .++|++|++++|. ++.++ .++.+++|++|+++++ .+..++...++. ++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-----l~ 100 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL----PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLF-----NQ 100 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS----CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTT-----CT
T ss_pred CCcEEEcCCCCCccCCCCC----CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCC-----CC
Confidence 4477888888777777654 4788888888876 45554 5788888888888875 566664443332 77
Q ss_pred cccEEEccccccccccccCCCCCccccCCCcceEeeccccccc
Q 035893 181 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQ 223 (755)
Q Consensus 181 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 223 (755)
+|++|+++++. ++.. +. . .+++|++|++++|. ++
T Consensus 101 ~L~~L~Ls~N~-l~~l-----p~-~-~l~~L~~L~Ls~N~-l~ 134 (562)
T 3a79_B 101 DLEYLDVSHNR-LQNI-----SC-C-PMASLRHLDLSFND-FD 134 (562)
T ss_dssp TCCEEECTTSC-CCEE-----CS-C-CCTTCSEEECCSSC-CS
T ss_pred CCCEEECCCCc-CCcc-----Cc-c-ccccCCEEECCCCC-cc
Confidence 77777777765 2222 11 1 56777777777775 54
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=7.6e-27 Score=253.01 Aligned_cols=414 Identities=22% Similarity=0.216 Sum_probs=200.8
Q ss_pred CCcceEEEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCC-CCCCCCCcceEeecccccceeeCccccCCCCCCCCC
Q 035893 102 KNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALP-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFP 180 (755)
Q Consensus 102 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 180 (755)
++|++|.++++....+|..++ .+++|++|++++|.....+| .++.+++|+.+++.+|. ..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~--~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------------~~ 71 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------------DR 71 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------------HH
T ss_pred ccchhhhcccCchhhCChhHh--cccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------------cc
Confidence 567777777777767777664 47777777777766555666 57777777666666552 24
Q ss_pred cccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCCCCCCccEEEeccCccccccCCCC-CccceEEE
Q 035893 181 CLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIEECEELSISITSL-PALCKMEI 259 (755)
Q Consensus 181 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l-~~L~~L~l 259 (755)
++++|++.++. ++.+ ....++|++|++++|. ++ .+|..+++|++|++++|.... ++.+ ++|+.|++
T Consensus 72 ~l~~L~l~~~~-l~~l--------p~~~~~L~~L~l~~n~-l~-~lp~~~~~L~~L~l~~n~l~~--l~~~~~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELNNLG-LSSL--------PELPPHLESLVASCNS-LT-ELPELPQSLKSLLVDNNNLKA--LSDLPPLLEYLGV 138 (454)
T ss_dssp TCSEEECTTSC-CSCC--------CSCCTTCSEEECCSSC-CS-SCCCCCTTCCEEECCSSCCSC--CCSCCTTCCEEEC
T ss_pred CCCEEEecCCc-cccC--------CCCcCCCCEEEccCCc-CC-ccccccCCCcEEECCCCccCc--ccCCCCCCCEEEC
Confidence 45666666664 2221 1123567777777774 66 366666777777776654321 1111 34444444
Q ss_pred cCCCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchhhhhhHHHHHHh
Q 035893 260 GGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSLVAEEEKDQQQQ 339 (755)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 339 (755)
+++.-.. +| -+.++++|++|+++++ .++.++.
T Consensus 139 ~~n~l~~----------------------------lp----------~~~~l~~L~~L~l~~N-~l~~lp~--------- 170 (454)
T 1jl5_A 139 SNNQLEK----------------------------LP----------ELQNSSFLKIIDVDNN-SLKKLPD--------- 170 (454)
T ss_dssp CSSCCSS----------------------------CC----------CCTTCTTCCEEECCSS-CCSCCCC---------
T ss_pred cCCCCCC----------------------------Cc----------ccCCCCCCCEEECCCC-cCcccCC---------
Confidence 4332111 11 0245567777777766 3444322
Q ss_pred hhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCC
Q 035893 340 LCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSS 419 (755)
Q Consensus 340 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 419 (755)
..++|++|++++|... .+| .++.+++|++|++++|. +..+|.. .++|++|++++|. +..+|. + ..+++
T Consensus 171 ---~~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~-l~~l~~~--~~~L~~L~l~~n~-l~~lp~-~--~~l~~ 238 (454)
T 1jl5_A 171 ---LPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNS-LKKLPDL--PLSLESIVAGNNI-LEELPE-L--QNLPF 238 (454)
T ss_dssp ---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTT
T ss_pred ---CcccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCc-CCcCCCC--cCcccEEECcCCc-CCcccc-c--CCCCC
Confidence 1258888888888654 466 58888999999998884 4445542 3688999999887 446664 3 68888
Q ss_pred ccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcc
Q 035893 420 LEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELP 499 (755)
Q Consensus 420 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~ 499 (755)
|++|++++ +.++.++. .+++|++|+++++. ++.++
T Consensus 239 L~~L~l~~-N~l~~l~~--~~~~L~~L~l~~N~-l~~l~----------------------------------------- 273 (454)
T 1jl5_A 239 LTTIYADN-NLLKTLPD--LPPSLEALNVRDNY-LTDLP----------------------------------------- 273 (454)
T ss_dssp CCEEECCS-SCCSSCCS--CCTTCCEEECCSSC-CSCCC-----------------------------------------
T ss_pred CCEEECCC-CcCCcccc--cccccCEEECCCCc-ccccC-----------------------------------------
Confidence 99999888 46776663 45678888777754 33222
Q ss_pred hhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccccccc
Q 035893 500 ATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKG 579 (755)
Q Consensus 500 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 579 (755)
..+++|++|++++|...+ ++. ..++|+.|++++| .+..++.. .++|++|++++|.. ..+|..
T Consensus 274 ---------~~~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N-~l~~i~~~---~~~L~~L~Ls~N~l-~~lp~~ 335 (454)
T 1jl5_A 274 ---------ELPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSN-EIRSLCDL---PPSLEELNVSNNKL-IELPAL 335 (454)
T ss_dssp ---------CCCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSS-CCSEECCC---CTTCCEEECCSSCC-SCCCCC
T ss_pred ---------cccCcCCEEECcCCccCc-ccC---cCCcCCEEECcCC-cCCcccCC---cCcCCEEECCCCcc-cccccc
Confidence 012456666666664332 221 1246666666666 33333321 13667777776663 334433
Q ss_pred CCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCccccccccccc
Q 035893 580 LHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRL 658 (755)
Q Consensus 580 l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 658 (755)
+++|+.|++++| +..++. .+++|++|++++|++..... +|..+. .| +. +.....+|
T Consensus 336 ---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~--ip~~l~------~L--~~-n~~~~~i~------ 392 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPD--IPESVE------DL--RM-NSHLAEVP------ 392 (454)
T ss_dssp ---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCC--CCTTCC------EE--EC-CC------------
T ss_pred ---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCC--ChHHHH------hh--hh-cccccccc------
Confidence 466777777766 222222 46777777777777655211 112222 22 22 12223333
Q ss_pred CCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 659 GTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 659 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
..+++|++|+++++ .++.+|. +. ++++.|.+.+|.
T Consensus 393 ----~~~~~L~~L~ls~N-~l~~~~~-iP--~sl~~L~~~~~~ 427 (454)
T 1jl5_A 393 ----ELPQNLKQLHVETN-PLREFPD-IP--ESVEDLRMNSER 427 (454)
T ss_dssp -------------------------------------------
T ss_pred ----cccCcCCEEECCCC-cCCcccc-ch--hhHhheeCcCcc
Confidence 23567888888774 4443221 11 356667777774
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.7e-25 Score=248.38 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=86.8
Q ss_pred CCcceEEEeeeCCCcCCC-CcCCCCCCCccEEEEecCCCCCcC-C-CCCCCCCcceEeecccccceeeCccccCCCCCCC
Q 035893 102 KNLEQFGICGYGGTKFPT-WLGDSSFLNLVTLKFEDCGMCTAL-P-SVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIP 178 (755)
Q Consensus 102 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l-p-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 178 (755)
++|++|+++++.+..+|. .+. .+++|++|++++|. ++.+ | .++.+++|++|+++++ .++.++.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~------ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--P------ 119 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS-CCCEECSC--C------
T ss_pred CCcCEEECCCCCccccChhhhc--cCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--c------
Confidence 788899998888877763 443 58889999999876 4444 4 5888899999999884 56777754 2
Q ss_pred CCcccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCCCCCCc--cEEEeccCcc
Q 035893 179 FPCLETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPAL--EMLVIEECEE 243 (755)
Q Consensus 179 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L--~~L~l~~~~~ 243 (755)
+++|++|+++++. +.... .+..++.+++|++|++++|. +.+.-...+++| ++|++++|..
T Consensus 120 l~~L~~L~Ls~N~-l~~l~---~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLP---VCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTCSEEECCSSC-CSBCC---CCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEEESSC
T ss_pred cccCCEEECCCCC-ccccC---chHhhcccCcccEEecCCCc-cccCchhhhhhceeeEEEeecccc
Confidence 8889999998886 22221 12236788899999999885 553222334444 6666666543
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=5.7e-25 Score=251.62 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=73.7
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCc-cCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVS-FPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
++++.+++++|......+..+..+++|+.|++++|..... .|..+..+++|++|++++|......|..+.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 4566666666665555555566666666666666654433 344555566666666666665444455666666666666
Q ss_pred eCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCC-CCccEEEEec
Q 035893 591 IGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRF-SSLRELIIRG 643 (755)
Q Consensus 591 ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~ 643 (755)
+++| +..++ ..+..+++|++|++++|++....+ ..+..+ ++|++|++++
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK----QELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS----SCTTCCCTTCCEEECTT
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH----HHHHhhhCcCCEEEeeC
Confidence 6665 33332 234455566666666665555443 334444 3566666655
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=7.5e-25 Score=239.62 Aligned_cols=258 Identities=16% Similarity=0.104 Sum_probs=163.9
Q ss_pred ccccEEEEecCCCCcccCcc-ccCCCCccEEEEccCCCcccCCC-ccC--CCCccEEEeccCCCCcccchhhhc------
Q 035893 345 CRLEYLKLSNCEGLVKLPQS-SLSLSSLREIEICKCSSLVSFPE-VAL--PSKLKKIQISYCDALKSLPEAWMC------ 414 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~--l~~L~~L~l~~~~~~~~~~~~~~~------ 414 (755)
++|++|++++|...+..|.. +..+++|++|++++|......+. +.. ..+|+.|++++|.... ++...+.
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc-cchhhcccccccc
Confidence 78888999988876666765 78999999999999964433332 222 3789999999998443 3322110
Q ss_pred -cCCCCccEEEeccCCcccc-cccc----cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCC
Q 035893 415 -HTNSSLEILIILYCNSLTY-IAEV----QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPS 488 (755)
Q Consensus 415 -~~~~~L~~L~l~~c~~l~~-~~~~----~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~ 488 (755)
..+++|++|++++| .++. ++.. ...++++.|+++++.......
T Consensus 208 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------------------ 256 (455)
T 3v47_A 208 PFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------------------------ 256 (455)
T ss_dssp TTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------------------------------
T ss_pred ccccceeeeEecCCC-cccccchhhhhccccccceeeEeecccccccccc------------------------------
Confidence 24578999999885 4443 2211 123567777777765332211
Q ss_pred ccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEec
Q 035893 489 LTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIY 568 (755)
Q Consensus 489 l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 568 (755)
..+.+.........+.-+++|+.|++++|...+..|..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 257 -----~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 257 -----GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp -----TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 000000000000011112578888888888877778778888888888888885444445567778888888888
Q ss_pred cCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 569 DCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 569 ~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+|......+..+.++++|++|++++| +..+. ..+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHT 404 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH----hHhccCCcccEEEccC
Confidence 88765555667777888888888877 22221 345556667777777766655333 3456666666666666
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.6e-24 Score=226.28 Aligned_cols=300 Identities=16% Similarity=0.150 Sum_probs=193.2
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
++|++|++++|.. ..++ .+..+++|++|++++| .+..++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEEE
Confidence 6777777777654 3444 3667777888888777 45555556667778888887776 444442 2 6777788888
Q ss_pred eccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhh
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLES 504 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~ 504 (755)
+++ +.++.++.....++|+.|++++|..+..+..
T Consensus 117 l~~-n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------------------------------------------- 150 (347)
T 4fmz_A 117 LNE-DNISDISPLANLTKMYSLNLGANHNLSDLSP--------------------------------------------- 150 (347)
T ss_dssp CTT-SCCCCCGGGTTCTTCCEEECTTCTTCCCCGG---------------------------------------------
T ss_pred CcC-CcccCchhhccCCceeEEECCCCCCcccccc---------------------------------------------
Confidence 777 3566655544555666776666654443331
Q ss_pred hhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCC
Q 035893 505 LEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLS 584 (755)
Q Consensus 505 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~ 584 (755)
.+.+ ++|++|++++|......+ +..+++|++|++++| .+..++. +..+++|+.|++++|...... . +..++
T Consensus 151 --~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~-~~~~~ 221 (347)
T 4fmz_A 151 --LSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQITDIT-P-VANMT 221 (347)
T ss_dssp --GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCG-G-GGGCT
T ss_pred --hhhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCCCCCCc-h-hhcCC
Confidence 1111 466677777665443322 556777777777776 3444443 555677777777777643322 2 56677
Q ss_pred CcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCC
Q 035893 585 TLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALP 663 (755)
Q Consensus 585 ~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 663 (755)
+|++|++++| +..+.. +..+++|++|++++|.+... ..+..+++|++|++++| .+..++. +.
T Consensus 222 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n--~l~~~~~--------~~ 284 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSN--QISDISV--------LN 284 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS--CCCCCGG--------GG
T ss_pred cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCC--ccCCChh--------hc
Confidence 7777777776 222223 56677788888888776553 23677888888888874 3333432 23
Q ss_pred CCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCc
Q 035893 664 LPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCP 724 (755)
Q Consensus 664 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 724 (755)
.+++|++|++++|......+..+..+++|++|++++| .++.+++...+++|++|++++|+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 6788888888886444444557888889999999998 46666654447788888888886
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.3e-24 Score=233.00 Aligned_cols=327 Identities=17% Similarity=0.180 Sum_probs=174.6
Q ss_pred ccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCc
Q 035893 309 NNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV 388 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 388 (755)
..+++|++|+++++ .++.++. ...+++|++|++++|...+. +. ++.+++|++|++++| .+..++.+
T Consensus 65 ~~l~~L~~L~Ls~n-~l~~~~~----------~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n-~l~~~~~~ 130 (466)
T 1o6v_A 65 EYLNNLTQINFSNN-QLTDITP----------LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNN-QITDIDPL 130 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG----------GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhhcCCCEEECCCC-ccCCchh----------hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCC-CCCCChHH
Confidence 45666777777666 3444321 12336677777776654333 32 666677777777666 34445555
Q ss_pred cCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCC
Q 035893 389 ALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSS 468 (755)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 468 (755)
..+++|++|++++|. +..++. + ..+++|+.|++.+ .+..++....+++|+.|+++++. ++.+.
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---------- 193 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDISA-L--SGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK-VSDIS---------- 193 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCCGG-G--TTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC-CCCCG----------
T ss_pred cCCCCCCEEECCCCc-cCCChh-h--ccCCcccEeecCC--cccCchhhccCCCCCEEECcCCc-CCCCh----------
Confidence 566777777777666 333332 2 5666777776642 34444434444556666666653 32222
Q ss_pred CccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCC
Q 035893 469 SSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCEN 548 (755)
Q Consensus 469 ~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 548 (755)
....+++|+.|+++++. +.. ..+ .+.+ ++|+.|++++|.... ++ .+..+++|+.|++++|.
T Consensus 194 --~l~~l~~L~~L~l~~n~-l~~---------~~~---~~~l-~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~- 254 (466)
T 1o6v_A 194 --VLAKLTNLESLIATNNQ-ISD---------ITP---LGIL-TNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQ- 254 (466)
T ss_dssp --GGGGCTTCSEEECCSSC-CCC---------CGG---GGGC-TTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSC-
T ss_pred --hhccCCCCCEEEecCCc-ccc---------ccc---cccc-CCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCc-
Confidence 12233455555554432 111 110 1222 466666666665433 22 35556666666666663
Q ss_pred CCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcC
Q 035893 549 LVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERG 627 (755)
Q Consensus 549 l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 627 (755)
+..++. +..+++|++|++++|.... ++. +..+++|+.|++++| +..+ .....+++|++|++++|.+....+
T Consensus 255 l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~---- 326 (466)
T 1o6v_A 255 ISNLAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP---- 326 (466)
T ss_dssp CCCCGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCGG----
T ss_pred cccchh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hhhcCCCCCCEEECcCCcCCCchh----
Confidence 333332 4456666666666665333 322 556666666666665 2222 224455666666666666554332
Q ss_pred cCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCC
Q 035893 628 RGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFP 707 (755)
Q Consensus 628 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 707 (755)
+..+++|++|++++| .+..++. +..+++|+.|++++| .+..+++ +..+++|++|++++| .+..+|
T Consensus 327 --~~~l~~L~~L~l~~n--~l~~~~~--------l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNN--KVSDVSS--------LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp --GGGCTTCCEEECCSS--CCCCCGG--------GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE-EEECCC
T ss_pred --hccCccCCEeECCCC--ccCCchh--------hccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCC-cccCCc
Confidence 456666666666663 2222221 135666666666664 3444443 566666666666666 344444
Q ss_pred C
Q 035893 708 E 708 (755)
Q Consensus 708 ~ 708 (755)
.
T Consensus 392 ~ 392 (466)
T 1o6v_A 392 V 392 (466)
T ss_dssp B
T ss_pred h
Confidence 3
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=3.7e-23 Score=226.31 Aligned_cols=251 Identities=15% Similarity=0.174 Sum_probs=125.7
Q ss_pred CCcceEEEeeeCCCcCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCCcceEeecccccceeeCccccCCCCCCCCCc
Q 035893 102 KNLEQFGICGYGGTKFPTWLGDSSFLNLVTLKFEDCGMCTALPSVGQLPSLKHLTVHGMSRVKRLGSEFYGDDSPIPFPC 181 (755)
Q Consensus 102 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 181 (755)
++++.|++.++....+|.. ..+++|++|++++|. ++.++.++.+++|++|+++++ .+..++. + + .+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~-~-----~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGV---EYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNN-QIADITP-L-A-----NLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCCCTTG---GGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-G-T-----TCTT
T ss_pred ccccEEecCCCCCccCcch---hhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCC-ccccChh-h-c-----CCCC
Confidence 4666777766666666542 246777777777764 455555677777777777764 3333332 2 1 1666
Q ss_pred ccEEEccccccccccccCCCCCccccCCCcceEeecccccccccCCCCCCCccEEEeccCccccccCCCCCccceEEEcC
Q 035893 182 LETLRFEDLQEWEEWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEMLVIEECEELSISITSLPALCKMEIGG 261 (755)
Q Consensus 182 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~ 261 (755)
|++|++.++. ++... .+..+++|++|++++|. +. .++ .+..+++|+.|++.+
T Consensus 114 L~~L~L~~n~-l~~~~------~~~~l~~L~~L~l~~n~-l~-~~~-------------------~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDID------PLKNLTNLNRLELSSNT-IS-DIS-------------------ALSGLTSLQQLSFGN 165 (466)
T ss_dssp CCEEECCSSC-CCCCG------GGTTCTTCSEEEEEEEE-EC-CCG-------------------GGTTCTTCSEEEEEE
T ss_pred CCEEECCCCC-CCCCh------HHcCCCCCCEEECCCCc-cC-CCh-------------------hhccCCcccEeecCC
Confidence 6666666653 22211 14566677777777764 44 222 122233333443321
Q ss_pred CCCceeecccCCCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchhhhhhHHHHHHhhh
Q 035893 262 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSLVAEEEKDQQQQLC 341 (755)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 341 (755)
. ...... +.++++|+.|+++++. ++.+.. .
T Consensus 166 ~--~~~~~~-------------------------------------~~~l~~L~~L~l~~n~-l~~~~~----------l 195 (466)
T 1o6v_A 166 Q--VTDLKP-------------------------------------LANLTTLERLDISSNK-VSDISV----------L 195 (466)
T ss_dssp S--CCCCGG-------------------------------------GTTCTTCCEEECCSSC-CCCCGG----------G
T ss_pred c--ccCchh-------------------------------------hccCCCCCEEECcCCc-CCCChh----------h
Confidence 0 000000 1233444444444432 222210 1
Q ss_pred hccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCcc
Q 035893 342 ELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLE 421 (755)
Q Consensus 342 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 421 (755)
..+++|++|++++|...+..| ++.+++|++|++++|. +..++.+..+++|++|++++|..... +. + ..+++|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-~--~~l~~L~ 268 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNL-AP-L--SGLTKLT 268 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GG-G--TTCTTCS
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccc-hh-h--hcCCCCC
Confidence 123566666666665443332 4556666666666663 44445555566666666666663332 22 2 5566666
Q ss_pred EEEeccCCcccccccccCCCCCcEEeeeC
Q 035893 422 ILIILYCNSLTYIAEVQLPPSLKQLDIYN 450 (755)
Q Consensus 422 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 450 (755)
+|++++| .++.++....+++|+.|++++
T Consensus 269 ~L~l~~n-~l~~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 269 ELKLGAN-QISNISPLAGLTALTNLELNE 296 (466)
T ss_dssp EEECCSS-CCCCCGGGTTCTTCSEEECCS
T ss_pred EEECCCC-ccCccccccCCCccCeEEcCC
Confidence 6666663 444443333333444444444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=9.9e-24 Score=228.73 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=69.9
Q ss_pred cCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCccCCCCCCceeeEeecCCc
Q 035893 538 LETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFLKIEGNM 617 (755)
Q Consensus 538 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~~L~l~~~~ 617 (755)
|+.|++++|...+.+| ...+++|+.|++++|..++.+|. ..++|+.|++++| ++|++|++++|.
T Consensus 266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-----------~~L~~L~L~~N~ 329 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-----------PKLVYLYLNNTE 329 (457)
T ss_dssp CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------TTCCEEECTTCC
T ss_pred CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-----------ccCCEEECCCCc
Confidence 4444555554444444 23345555666666655555542 3355666666666 567777777777
Q ss_pred ccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEee
Q 035893 618 EIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDL 697 (755)
Q Consensus 618 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 697 (755)
+... .+.++++|++|++++|. +.. ++.|..|+++++ .+... ..+..|+.+++
T Consensus 330 l~~l-------~l~~l~~L~~L~l~~N~--l~~--------------l~~L~~L~l~~n-~l~g~----~~~~~l~~l~l 381 (457)
T 3bz5_A 330 LTEL-------DVSHNTKLKSLSCVNAH--IQD--------------FSSVGKIPALNN-NFEAE----GQTITMPKETL 381 (457)
T ss_dssp CSCC-------CCTTCTTCSEEECCSSC--CCB--------------CTTGGGSSGGGT-SEEEE----EEEEECCCBCC
T ss_pred cccc-------ccccCCcCcEEECCCCC--CCC--------------ccccccccccCC-cEEec----ceeeecCcccc
Confidence 6552 15677778888887742 222 234455555542 22221 24455666777
Q ss_pred CCCCCCCCCCC
Q 035893 698 GDCPKLKYFPE 708 (755)
Q Consensus 698 ~~c~~l~~l~~ 708 (755)
++|.--+.+|+
T Consensus 382 ~~N~l~g~ip~ 392 (457)
T 3bz5_A 382 TNNSLTIAVSP 392 (457)
T ss_dssp BTTBEEEECCT
T ss_pred ccCcEEEEcCh
Confidence 77744445665
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=8.5e-24 Score=231.21 Aligned_cols=344 Identities=17% Similarity=0.110 Sum_probs=218.1
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--ccCCCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
++|++|++++|...+..|..++.+++|++|++++|.....++. +..+++|++|++++|......+..+ ..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT--TTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc--cCcccCCE
Confidence 5667777777665555566666777777777776654434432 4446777777777766444434444 56677777
Q ss_pred EEeccCCcccc-ccc---ccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCc
Q 035893 423 LIILYCNSLTY-IAE---VQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNEL 498 (755)
Q Consensus 423 L~l~~c~~l~~-~~~---~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~ 498 (755)
|++++| .++. ++. ....++|++|+++++. ++.+.+.. ....+++|+.|+++++. +
T Consensus 108 L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---------~~~~l~~L~~L~L~~n~----------l 166 (455)
T 3v47_A 108 LTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPAS---------FFLNMRRFHVLDLTFNK----------V 166 (455)
T ss_dssp EECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCG---------GGGGCTTCCEEECTTCC----------B
T ss_pred EeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCccc---------ccCCCCcccEEeCCCCc----------c
Confidence 777664 3433 221 1234556666666643 22221100 02234456666654432 1
Q ss_pred chhhhhhhccCCCCCcceEEEccCccchhhhhh--------cCCCCCcCeEEEecCCCCCccCCCCCC---CCCceeEEe
Q 035893 499 PATLESLEVGNLPPSLKSLRVNFCSKLELIAER--------LDNNTSLETISISNCENLVSFPEGGLP---CAKLRTLKI 567 (755)
Q Consensus 499 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~l~~~~~~~~~---l~~L~~L~l 567 (755)
.+..+......-..+|+.|++++|......+.. +..+++|++|++++|......+..+.. .++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 111111101111147899999998765543222 345789999999999655544433322 378999999
Q ss_pred ccCcCccccc----------ccCC--CCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCC
Q 035893 568 YDCKRLKALP----------KGLH--NLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRF 633 (755)
Q Consensus 568 ~~~~~l~~~~----------~~l~--~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l 633 (755)
++|....... ..+. ..++|+.|++++| +.... ..+..+++|++|++++|.+....+ ..+..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l 322 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NAFWGL 322 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----TTTTTC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----hHhcCc
Confidence 9886544221 1111 2368999999988 33222 457788999999999999887655 568899
Q ss_pred CCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccc-cccccCCCCccEEeeCCCCCCCCCCCCCC-
Q 035893 634 SSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERL-SSSIVDLQNLTQLDLGDCPKLKYFPEKGL- 711 (755)
Q Consensus 634 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~- 711 (755)
++|++|++++| .+..++... +..+++|++|+++++ .++.+ |..+..+++|++|++++| .++.+|+..+
T Consensus 323 ~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 392 (455)
T 3v47_A 323 THLLKLNLSQN--FLGSIDSRM------FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFD 392 (455)
T ss_dssp TTCCEEECCSS--CCCEECGGG------GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred ccCCEEECCCC--ccCCcChhH------hcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhc
Confidence 99999999984 344443222 357899999999996 55665 668899999999999999 7888888654
Q ss_pred -cccccceeecCCcc
Q 035893 712 -PSSLLRLNIAGCPL 725 (755)
Q Consensus 712 -~~~L~~L~i~~c~~ 725 (755)
+++|++|++++|+.
T Consensus 393 ~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 393 RLTSLQKIWLHTNPW 407 (455)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred cCCcccEEEccCCCc
Confidence 78999999999874
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=5.1e-23 Score=223.13 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=43.0
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
++|++|++++|... .+| ++.+++|+.|++++|. +..+ .++.+++|++|++++|+. ..+| + ..+++|+.|+
T Consensus 170 ~~L~~L~ls~n~l~-~l~--l~~l~~L~~L~l~~N~-l~~~-~l~~l~~L~~L~Ls~N~l-~~ip--~--~~l~~L~~L~ 239 (457)
T 3bz5_A 170 TQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNN-ITKL-DLNQNIQLTFLDCSSNKL-TEID--V--TPLTQLTYFD 239 (457)
T ss_dssp TTCCEEECCSSCCC-CCC--CTTCTTCCEEECCSSC-CSCC-CCTTCTTCSEEECCSSCC-SCCC--C--TTCTTCSEEE
T ss_pred CcCCEEECCCCccc-eec--cccCCCCCEEECcCCc-CCee-ccccCCCCCEEECcCCcc-cccC--c--cccCCCCEEE
Confidence 45555555555432 233 5556666666666663 3333 244566666666666653 3344 2 4566666666
Q ss_pred eccCCcccccc
Q 035893 425 ILYCNSLTYIA 435 (755)
Q Consensus 425 l~~c~~l~~~~ 435 (755)
+++ +.++.++
T Consensus 240 l~~-N~l~~~~ 249 (457)
T 3bz5_A 240 CSV-NPLTELD 249 (457)
T ss_dssp CCS-SCCSCCC
T ss_pred eeC-CcCCCcC
Confidence 666 3454443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=6.6e-23 Score=225.41 Aligned_cols=294 Identities=19% Similarity=0.136 Sum_probs=209.0
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC-CccCCCCccEEEeccCCCCcccchhhhccCCCCccEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEIL 423 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 423 (755)
+++++|++++|...+..+..+..+++|++|++++|......+ .+..+++|++|++++|. +..++...+ ..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCCEE
Confidence 678899999888766667788889999999998885433323 34568899999999887 555665443 678889999
Q ss_pred EeccCCcccccccc--cCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchh
Q 035893 424 IILYCNSLTYIAEV--QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPAT 501 (755)
Q Consensus 424 ~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~ 501 (755)
++++ +.++.+... ...++|++|+++++. ++.+...
T Consensus 110 ~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------------------------------------- 146 (477)
T 2id5_A 110 DISE-NKIVILLDYMFQDLYNLKSLEVGDND-LVYISHR----------------------------------------- 146 (477)
T ss_dssp ECTT-SCCCEECTTTTTTCTTCCEEEECCTT-CCEECTT-----------------------------------------
T ss_pred ECCC-CccccCChhHccccccCCEEECCCCc-cceeChh-----------------------------------------
Confidence 9988 456555433 224556666666542 1111100
Q ss_pred hhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCC
Q 035893 502 LESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLH 581 (755)
Q Consensus 502 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~ 581 (755)
.++.+ ++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.....++....
T Consensus 147 ----~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 147 ----AFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp ----SSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT
T ss_pred ----hccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc
Confidence 02222 5889999999877666666788899999999999854443444677789999999999988888877766
Q ss_pred CCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccC
Q 035893 582 NLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLG 659 (755)
Q Consensus 582 ~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (755)
...+|+.|++++| +..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++.
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~------ 289 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGG--QLAVVEP------ 289 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSS--CCSEECT------
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCC--ccceECH------
Confidence 6778999999887 44443 345677888899998888776544 55788888888888874 3333322
Q ss_pred CCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCCCC
Q 035893 660 TALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 660 ~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 701 (755)
..+..+++|++|+++++ .++.++. .+..+++|++|++++|+
T Consensus 290 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 12356788888888884 6777766 56778888888888885
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.1e-22 Score=213.65 Aligned_cols=303 Identities=18% Similarity=0.242 Sum_probs=214.5
Q ss_pred ccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCc
Q 035893 309 NNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV 388 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 388 (755)
..++++++|++.++ .++.++. ...+++|++|++++|... .++. +..+++|++|++++| .+..++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~----------~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG----------IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT----------GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh----------hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 35677888888876 3444421 123589999999998654 4554 889999999999998 56667777
Q ss_pred cCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCC
Q 035893 389 ALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSS 468 (755)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 468 (755)
..+++|++|++++|. +..++. + ..+++|+.|++++|..+..++.....++|++|++++|. +..+..
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--------- 172 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--------- 172 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------
T ss_pred cCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---------
Confidence 889999999999998 444544 3 78999999999998888877766667778888888764 222210
Q ss_pred CccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCC
Q 035893 469 SSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCEN 548 (755)
Q Consensus 469 ~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 548 (755)
++.+ ++|++|++++|..... +. +..+++|+.+++++| .
T Consensus 173 --------------------------------------~~~l-~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n-~ 210 (347)
T 4fmz_A 173 --------------------------------------IANL-TDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVN-Q 210 (347)
T ss_dssp --------------------------------------GGGC-TTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSS-C
T ss_pred --------------------------------------hccC-CCCCEEEccCCccccc-cc-ccCCCccceeecccC-C
Confidence 1111 4677777777754433 33 667788888888887 3
Q ss_pred CCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcC
Q 035893 549 LVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERG 627 (755)
Q Consensus 549 l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 627 (755)
+..++. +..+++|++|++++|.. ..++. +..+++|++|++++| +..+ ..+..+++|++|++++|.+...
T Consensus 211 l~~~~~-~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~------ 280 (347)
T 4fmz_A 211 ITDITP-VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI------ 280 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC------
T ss_pred CCCCch-hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC------
Confidence 444433 55677888888888874 33433 777888888888877 2222 4466778888888888877664
Q ss_pred cCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 628 RGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 628 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
..+..+++|++|++++|. +...+... +..+++|++|++++| .++.+++ +..+++|++|++++|+
T Consensus 281 ~~~~~l~~L~~L~L~~n~--l~~~~~~~------l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQ--LGNEDMEV------IGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGGCTTCSEEECCSSC--CCGGGHHH------HHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred hhhcCCCCCCEEECcCCc--CCCcChhH------hhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence 236788999999999842 33222221 146789999999996 5677765 8889999999999994
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3e-22 Score=213.90 Aligned_cols=168 Identities=14% Similarity=0.024 Sum_probs=105.7
Q ss_pred CCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEe
Q 035893 534 NNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLK 612 (755)
Q Consensus 534 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~ 612 (755)
.+++|+.|++++| .+..++ ..++|++|++++|.. ..+|.. ..++|+.|++++| +... ..+..+++|++|+
T Consensus 184 ~l~~L~~L~l~~n-~l~~~~----~~~~L~~L~l~~n~l-~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 184 LIPSLFHANVSYN-LLSTLA----IPIAVEELDASHNSI-NVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVD 254 (390)
T ss_dssp GCTTCSEEECCSS-CCSEEE----CCSSCSEEECCSSCC-CEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEE
T ss_pred cccccceeecccc-cccccC----CCCcceEEECCCCee-eecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEE
Confidence 3445555555554 222221 123455555555542 222221 2345556666555 1111 3344556777777
Q ss_pred ecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCc
Q 035893 613 IEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNL 692 (755)
Q Consensus 613 l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L 692 (755)
+++|.+....+ ..+..+++|++|++++| .+..++... ..+++|++|++++| .+..+|..+..+++|
T Consensus 255 Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 255 LSYNELEKIMY----HPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRL 320 (390)
T ss_dssp CCSSCCCEEES----GGGTTCSSCCEEECCSS--CCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTC
T ss_pred CCCCcCCCcCh----hHccccccCCEEECCCC--cCcccCccc-------CCCCCCCEEECCCC-cceecCccccccCcC
Confidence 77776665443 45778888888888874 444555433 46788999999985 777888888889999
Q ss_pred cEEeeCCCCCCCCCCCCCCcccccceeecCCcch
Q 035893 693 TQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPLI 726 (755)
Q Consensus 693 ~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 726 (755)
++|++++| .++.++. ..+++|++|++++|+.-
T Consensus 321 ~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 321 ENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SEEECCSS-CCCCCCC-CTTCCCSEEECCSSCEE
T ss_pred CEEECCCC-ccceeCc-hhhccCCEEEcCCCCcc
Confidence 99999999 5777763 34778999999998843
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=5.2e-22 Score=218.25 Aligned_cols=294 Identities=21% Similarity=0.219 Sum_probs=225.1
Q ss_pred CCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--cc
Q 035893 312 CSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VA 389 (755)
Q Consensus 312 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~ 389 (755)
.+++.|+++++ .++.+.... ...+++|++|++++|...+..|..+.++++|++|++++|. +..++. +.
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDE--------FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTT--------TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSST
T ss_pred CCCcEEECCCC-ccceECHhH--------ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCccccc
Confidence 35667777766 355443221 1234899999999998777778889999999999999985 666664 45
Q ss_pred CCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCccccccccc--CCCCCcEEeeeCCcCCCCCcccccccccC
Q 035893 390 LPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQ--LPPSLKQLDIYNCDNIRTLTVEEGIQCSS 467 (755)
Q Consensus 390 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 467 (755)
.+++|++|++++|......+..+ ..+++|++|++++ +.++.++... ..++|+.|+++++. ++.++..
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~------- 170 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTE------- 170 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHH-------
T ss_pred CCCCCCEEECCCCccccCChhHc--cccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCc-CcccChh-------
Confidence 69999999999999655555554 7899999999998 5677665432 34678888887763 3322210
Q ss_pred CCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCC
Q 035893 468 SSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCE 547 (755)
Q Consensus 468 ~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 547 (755)
.++.+ ++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 171 --------------------------------------~l~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 171 --------------------------------------ALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp --------------------------------------HHTTC-TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred --------------------------------------Hhccc-CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 02223 589999999998877777778999999999999999
Q ss_pred CCCccCCCCCCCCCceeEEeccCcCccccc-ccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhh
Q 035893 548 NLVSFPEGGLPCAKLRTLKIYDCKRLKALP-KGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMI 624 (755)
Q Consensus 548 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~ 624 (755)
.++.++.......+|++|++++|.. ..+| ..+..+++|+.|++++| +..+. ..+..+++|++|++++|.+....+
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 289 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP- 289 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-
T ss_pred cccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-
Confidence 9999988777778999999999985 4555 46789999999999998 33333 456788999999999999887655
Q ss_pred hcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCC
Q 035893 625 ERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPS 678 (755)
Q Consensus 625 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 678 (755)
..+..+++|++|++++| .+..++... +..+++|++|++++++-
T Consensus 290 ---~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 290 ---YAFRGLNYLRVLNVSGN--QLTTLEESV------FHSVGNLETLILDSNPL 332 (477)
T ss_dssp ---TTBTTCTTCCEEECCSS--CCSCCCGGG------BSCGGGCCEEECCSSCE
T ss_pred ---HHhcCcccCCEEECCCC--cCceeCHhH------cCCCcccCEEEccCCCc
Confidence 56899999999999984 555565433 35789999999999643
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.3e-21 Score=207.04 Aligned_cols=301 Identities=17% Similarity=0.134 Sum_probs=181.3
Q ss_pred CCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--c
Q 035893 311 ICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--V 388 (755)
Q Consensus 311 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~ 388 (755)
+.+++.+++.++ .++.++...+ ..+++|++|++++|...+..+..+..+++|++|++++|. +..++. +
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~--------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCceEEEecCC-chhhCChhHh--------cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHh
Confidence 456777777765 4665544321 223788888888887655555577888888888888885 444432 3
Q ss_pred cCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc--cCCCCCcEEeeeCCcCCCCCccccccccc
Q 035893 389 ALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV--QLPPSLKQLDIYNCDNIRTLTVEEGIQCS 466 (755)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~~~~~~ 466 (755)
..+++|++|++++|. +..++...+ ..+++|++|++++ +.++.++.. ...++|++|+++++. ++.++
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------- 181 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-------- 181 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--------
T ss_pred cCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCc-CCccc--------
Confidence 558888888888887 455665543 6778888888887 456655443 234567777776643 22221
Q ss_pred CCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecC
Q 035893 467 SSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNC 546 (755)
Q Consensus 467 ~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 546 (755)
.+.+ ++|+.+++++|.... +...++|++|++++|
T Consensus 182 ----------------------------------------~~~l-~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 182 ----------------------------------------LSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHN 215 (390)
T ss_dssp ----------------------------------------GGGC-TTCSEEECCSSCCSE-----EECCSSCSEEECCSS
T ss_pred ----------------------------------------cccc-cccceeecccccccc-----cCCCCcceEEECCCC
Confidence 1111 355566666553321 122345666666665
Q ss_pred CCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhh
Q 035893 547 ENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMI 624 (755)
Q Consensus 547 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~ 624 (755)
.+..++... .++|++|++++|... .. ..+..+++|++|++++| +.... ..+..+++|++|++++|.+....
T Consensus 216 -~l~~~~~~~--~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-- 288 (390)
T 3o6n_A 216 -SINVVRGPV--NVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-- 288 (390)
T ss_dssp -CCCEEECCC--CSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE--
T ss_pred -eeeeccccc--cccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC--
Confidence 344444322 356666666666533 22 34566666666666665 22221 34455666777777777655432
Q ss_pred hcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 625 ERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 625 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
..+..+++|++|++++| .+..++... ..+++|++|+++++ .++.++ +..+++|++|++++|+
T Consensus 289 ---~~~~~l~~L~~L~L~~n--~l~~~~~~~-------~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 ---LYGQPIPTLKVLDLSHN--HLLHVERNQ-------PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ---CSSSCCTTCCEEECCSS--CCCCCGGGH-------HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ---cccCCCCCCCEEECCCC--cceecCccc-------cccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 23456777777777774 344454433 35677888888774 566665 6778888888888884
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.8e-21 Score=219.58 Aligned_cols=304 Identities=17% Similarity=0.139 Sum_probs=159.2
Q ss_pred CCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--c
Q 035893 311 ICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--V 388 (755)
Q Consensus 311 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~ 388 (755)
+.+++.+++.++ .++.++...+ ..+++|++|++++|...+..|..++.+++|++|++++|. +..++. +
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCceEEEeeCC-CCCCcCHHHH--------ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH
Confidence 456666776665 3555543321 123667777777776554445566677777777777764 333332 2
Q ss_pred cCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc--cCCCCCcEEeeeCCcCCCCCccccccccc
Q 035893 389 ALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV--QLPPSLKQLDIYNCDNIRTLTVEEGIQCS 466 (755)
Q Consensus 389 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~~~~~~ 466 (755)
+.+++|++|++++|. +..+|...+ ..+++|++|++++| .++.++.. ..+++|+.|+++++. ++.++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-------- 187 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD-------- 187 (597)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--------
T ss_pred cCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcC--------
Confidence 446777777777766 444444433 56667777777663 44444322 122344444444432 11111
Q ss_pred CCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecC
Q 035893 467 SSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNC 546 (755)
Q Consensus 467 ~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 546 (755)
.+.+ ++|+.|++++|.... +...++|+.|++++|
T Consensus 188 ----------------------------------------~~~l-~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 188 ----------------------------------------LSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHN 221 (597)
T ss_dssp ----------------------------------------GGGC-TTCSEEECCSSCCSE-----EECCTTCSEEECCSS
T ss_pred ----------------------------------------hhhh-hhhhhhhcccCcccc-----ccCCchhheeeccCC
Confidence 1111 355555555553221 122345555555555
Q ss_pred CCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhc
Q 035893 547 ENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIER 626 (755)
Q Consensus 547 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 626 (755)
.+..++..+ .++|+.|++++|.... . ..+.. +++|++|++++|.+....+
T Consensus 222 -~l~~~~~~~--~~~L~~L~L~~n~l~~-~-~~l~~----------------------l~~L~~L~Ls~N~l~~~~~--- 271 (597)
T 3oja_B 222 -SINVVRGPV--NVELTILKLQHNNLTD-T-AWLLN----------------------YPGLVEVDLSYNELEKIMY--- 271 (597)
T ss_dssp -CCCEEECSC--CSCCCEEECCSSCCCC-C-GGGGG----------------------CTTCSEEECCSSCCCEEES---
T ss_pred -ccccccccc--CCCCCEEECCCCCCCC-C-hhhcc----------------------CCCCCEEECCCCccCCCCH---
Confidence 233333222 2345555555554222 1 23334 4555555555555544333
Q ss_pred CcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCC
Q 035893 627 GRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYF 706 (755)
Q Consensus 627 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 706 (755)
..+..+++|++|++++| .+..++... ..+++|++|++++| .+..+|..+..+++|++|++++| .+..+
T Consensus 272 -~~~~~l~~L~~L~Ls~N--~l~~l~~~~-------~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~ 339 (597)
T 3oja_B 272 -HPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTL 339 (597)
T ss_dssp -GGGTTCSSCCEEECTTS--CCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCC
T ss_pred -HHhcCccCCCEEECCCC--CCCCCCccc-------ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCc
Confidence 34566666666666663 333344322 34566777777663 55566666667777777777777 45555
Q ss_pred CCCCCcccccceeecCCcc
Q 035893 707 PEKGLPSSLLRLNIAGCPL 725 (755)
Q Consensus 707 ~~~~~~~~L~~L~i~~c~~ 725 (755)
+. ..+++|+.|++++||.
T Consensus 340 ~~-~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 340 KL-STHHTLKNLTLSHNDW 357 (597)
T ss_dssp CC-CTTCCCSEEECCSSCE
T ss_pred Ch-hhcCCCCEEEeeCCCC
Confidence 42 2355777777777663
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=4e-20 Score=192.54 Aligned_cols=291 Identities=16% Similarity=0.185 Sum_probs=171.1
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--ccCCCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
.+++.++++++. +..+|..+. ++|+.|++++|. +..++. +..+++|++|++++|......+..+ ..+++|++
T Consensus 31 c~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLER 104 (330)
T ss_dssp EETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCE
T ss_pred CCCeEEEecCCC-ccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCCE
Confidence 478888888765 446665443 678888888884 445543 5568888888888888554445554 77888888
Q ss_pred EEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhh
Q 035893 423 LIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATL 502 (755)
Q Consensus 423 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~ 502 (755)
|++++ +.++.++.... ++|++|+++++. ++.+...
T Consensus 105 L~Ls~-n~l~~l~~~~~-~~L~~L~l~~n~-l~~~~~~------------------------------------------ 139 (330)
T 1xku_A 105 LYLSK-NQLKELPEKMP-KTLQELRVHENE-ITKVRKS------------------------------------------ 139 (330)
T ss_dssp EECCS-SCCSBCCSSCC-TTCCEEECCSSC-CCBBCHH------------------------------------------
T ss_pred EECCC-CcCCccChhhc-ccccEEECCCCc-ccccCHh------------------------------------------
Confidence 88888 45666654332 557777766643 2221100
Q ss_pred hhhhccCCCCCcceEEEccCccch--hhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccC
Q 035893 503 ESLEVGNLPPSLKSLRVNFCSKLE--LIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGL 580 (755)
Q Consensus 503 ~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l 580 (755)
.++.+ ++|+.|++++|.... ..+..+..+++|++|++++| .++.+|..+. ++|++|++++|......+..+
T Consensus 140 ---~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 140 ---VFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp ---HHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred ---HhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHh
Confidence 02222 477788888776643 44556777888888888887 4556665443 678888888887555556667
Q ss_pred CCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCccccccccccc
Q 035893 581 HNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRL 658 (755)
Q Consensus 581 ~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 658 (755)
..+++|+.|++++| +..+. ..+..+++|++|++++|.+... |..+..+++|++|++++| .+..++......
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N--~i~~~~~~~f~~ 285 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-----PGGLADHKYIQVVYLHNN--NISAIGSNDFCP 285 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-----CTTTTTCSSCCEEECCSS--CCCCCCTTSSSC
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-----ChhhccCCCcCEEECCCC--cCCccChhhcCC
Confidence 77777777777776 22222 2345566677777777765522 134566667777777663 333333322100
Q ss_pred CCCCCCCCccceEecccCCCCc--cccccccCCCCccEEeeCCC
Q 035893 659 GTALPLPASLTSLTIFSFPSLE--RLSSSIVDLQNLTQLDLGDC 700 (755)
Q Consensus 659 ~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c 700 (755)
.......++++.|++++++... ..|..+..+++++.+++++|
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 0001123455555555543211 11224455555555555554
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.2e-20 Score=212.86 Aligned_cols=305 Identities=17% Similarity=0.173 Sum_probs=194.8
Q ss_pred CCCCCceeEeecCCCcccccCCCCCCccchhhccccccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEE
Q 035893 273 HLGSQNSVVCRDTSNQVFLSGPLKPRIPKLEELGISNNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKL 352 (755)
Q Consensus 273 ~~~~l~~L~l~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l 352 (755)
.+.+++.+++.++. +..+ ...++..+++|+.|+++++. ++.++... ...+++|++|++
T Consensus 49 ~l~~l~~l~l~~~~-l~~l------------p~~~~~~l~~L~~L~L~~n~-l~~~~~~~--------~~~l~~L~~L~L 106 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKL------------PAALLDSFRQVELLNLNDLQ-IEEIDTYA--------FAYAHTIQKLYM 106 (597)
T ss_dssp GGCCCSEEEESSCE-ESEE------------CTHHHHHCCCCSEEECTTSC-CCEECTTT--------TTTCTTCCEEEC
T ss_pred cCCCceEEEeeCCC-CCCc------------CHHHHccCCCCcEEECCCCC-CCCCChHH--------hcCCCCCCEEEC
Confidence 46788888887753 2222 22335678999999999884 66554322 123489999999
Q ss_pred ecCCCCcccCccccCCCCccEEEEccCCCcccCCC--ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCc
Q 035893 353 SNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNS 430 (755)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 430 (755)
++|...+..|..++.+++|++|++++|. +..+|. +..+++|++|++++|......+..+ ..+++|+.|++++ +.
T Consensus 107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~-N~ 182 (597)
T 3oja_B 107 GFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSS-NR 182 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTT-SC
T ss_pred CCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcC-CC
Confidence 9998777667778999999999999995 556665 3569999999999998555444444 7899999999999 56
Q ss_pred ccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCC
Q 035893 431 LTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNL 510 (755)
Q Consensus 431 l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~ 510 (755)
++.++.. .+++|+.|+++++. +..+. .
T Consensus 183 l~~~~~~-~l~~L~~L~l~~n~-l~~l~---------------------------------------------------~ 209 (597)
T 3oja_B 183 LTHVDLS-LIPSLFHANVSYNL-LSTLA---------------------------------------------------I 209 (597)
T ss_dssp CSBCCGG-GCTTCSEEECCSSC-CSEEE---------------------------------------------------C
T ss_pred CCCcChh-hhhhhhhhhcccCc-ccccc---------------------------------------------------C
Confidence 7776543 34558888877642 22111 1
Q ss_pred CCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 511 PPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 511 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
|++|+.|++++|..... +.. ..++|+.|++++|. +... ..+..+++|+.|++++|......|..+..+++|+.|+
T Consensus 210 ~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 210 PIAVEELDASHNSINVV-RGP--VNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp CTTCSEEECCSSCCCEE-ECS--CCSCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CchhheeeccCCccccc-ccc--cCCCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 24566666666643322 221 13566666666663 3322 3344566666677766665555556666666677776
Q ss_pred eCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccc
Q 035893 591 IGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLT 669 (755)
Q Consensus 591 ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 669 (755)
+++| +..++.....+++|++|++++|.+...+ ..+..+++|++|++++|. +..++ +..+++|+
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~~l~~L~~L~L~~N~--l~~~~---------~~~~~~L~ 348 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE-----RNQPQFDRLENLYLDHNS--IVTLK---------LSTHHTLK 348 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSSCCCCCG-----GGHHHHTTCSEEECCSSC--CCCCC---------CCTTCCCS
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCCCCCccC-----cccccCCCCCEEECCCCC--CCCcC---------hhhcCCCC
Confidence 6665 3333334445566777777776655322 234566777777777632 33332 13456677
Q ss_pred eEecccCC
Q 035893 670 SLTIFSFP 677 (755)
Q Consensus 670 ~L~l~~~~ 677 (755)
.|++++++
T Consensus 349 ~L~l~~N~ 356 (597)
T 3oja_B 349 NLTLSHND 356 (597)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 77776643
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6e-20 Score=191.35 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=162.2
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC--CccCCCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
.+++.++++++. +..+|..+ .++|+.|++++|. +..++ .+..+++|++|++++|......+..+ ..+++|++
T Consensus 33 c~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCE
T ss_pred ccCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCE
Confidence 467777777765 34666544 2678888888775 44443 25557888888888887444434444 67788888
Q ss_pred EEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhh
Q 035893 423 LIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATL 502 (755)
Q Consensus 423 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~ 502 (755)
|++++ +.++.++.... ++|++|+++++. ++.++..
T Consensus 107 L~L~~-n~l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~------------------------------------------ 141 (332)
T 2ft3_A 107 LYISK-NHLVEIPPNLP-SSLVELRIHDNR-IRKVPKG------------------------------------------ 141 (332)
T ss_dssp EECCS-SCCCSCCSSCC-TTCCEEECCSSC-CCCCCSG------------------------------------------
T ss_pred EECCC-CcCCccCcccc-ccCCEEECCCCc-cCccCHh------------------------------------------
Confidence 88877 45666654433 556666666543 2222100
Q ss_pred hhhhccCCCCCcceEEEccCccch--hhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccC
Q 035893 503 ESLEVGNLPPSLKSLRVNFCSKLE--LIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGL 580 (755)
Q Consensus 503 ~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l 580 (755)
.++.+ ++|+.|++++|.... ..+..+..+ +|+.|++++| .++.+|..+. ++|++|++++|......+..+
T Consensus 142 ---~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 142 ---VFSGL-RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp ---GGSSC-SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred ---HhCCC-ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHh
Confidence 01122 467777777776542 334555555 7777777777 4555665443 577777777777555555566
Q ss_pred CCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCccccccccccc
Q 035893 581 HNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRL 658 (755)
Q Consensus 581 ~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 658 (755)
..+++|+.|++++| +..+. ..+..+++|++|++++|.+... |..+..+++|++|++++| .++.++......
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~ 286 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-----PAGLPDLKLLQVVYLHTN--NITKVGVNDFCP 286 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-----CTTGGGCTTCCEEECCSS--CCCBCCTTSSSC
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-----ChhhhcCccCCEEECCCC--CCCccChhHccc
Confidence 77777777777766 33332 2345566677777777665522 134566677777777663 333443222000
Q ss_pred CCCCCCCCccceEecccCCCC--ccccccccCCCCccEEeeCCC
Q 035893 659 GTALPLPASLTSLTIFSFPSL--ERLSSSIVDLQNLTQLDLGDC 700 (755)
Q Consensus 659 ~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~l~~c 700 (755)
.......++|+.|++++++.. ...|..+..+++|+.+++++|
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 000011344555555554322 122334555555555555555
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.7e-21 Score=220.68 Aligned_cols=275 Identities=16% Similarity=0.118 Sum_probs=139.3
Q ss_pred ccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCC---cccCccccCCCCccEEEEccCCCcccC
Q 035893 309 NNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGL---VKLPQSSLSLSSLREIEICKCSSLVSF 385 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~l~~~ 385 (755)
.++++|++|++.+|. +..++ .....+++|++|+++++... ...+..+..+++|+.|.++++. ...+
T Consensus 217 ~~~~~L~~L~L~~~~-~~~l~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l 285 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFE-ILELV---------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM 285 (592)
T ss_dssp HHCTTCCEEECSSCB-GGGGH---------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTG
T ss_pred hhCCCCcEEeccCcc-HHHHH---------HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHH
Confidence 345666666666652 22221 11223367777777654322 2333456667777777777652 2333
Q ss_pred CC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc-cCCCCCcEEeeeC----------CcC
Q 035893 386 PE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV-QLPPSLKQLDIYN----------CDN 453 (755)
Q Consensus 386 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~----------~~~ 453 (755)
+. ...+++|++|++++|.........++ ..+++|++|++.++-.-..++.. ...++|++|++++ |..
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLI-QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHH-TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHH-HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 33 23467777777777772222221222 56777777777632111111111 1234466666663 332
Q ss_pred CCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcC
Q 035893 454 IRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLD 533 (755)
Q Consensus 454 L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 533 (755)
++... +... ...+ ++|++|+++.+......+..+.
T Consensus 365 ~~~~~-------------------------------------------~~~l-~~~~-~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 365 VSQRG-------------------------------------------LIAL-AQGC-QELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCHHH-------------------------------------------HHHH-HHHC-TTCSEEEEEESCCCHHHHHHHH
T ss_pred cCHHH-------------------------------------------HHHH-HhhC-ccCeEEEeecCCccHHHHHHHH
Confidence 22111 0000 0111 5788888866655555544454
Q ss_pred C-CCCcCeEEEec---CCCCCccCC------CCCCCCCceeEEeccCcC--ccccccc-CCCCCCcceeEeCCcCCCCc-
Q 035893 534 N-NTSLETISISN---CENLVSFPE------GGLPCAKLRTLKIYDCKR--LKALPKG-LHNLSTLQYLTIGGALPSLE- 599 (755)
Q Consensus 534 ~-l~~L~~L~l~~---~~~l~~~~~------~~~~l~~L~~L~l~~~~~--l~~~~~~-l~~l~~L~~L~ls~~~~~l~- 599 (755)
. +++|+.|++++ |..++..|. .+..+++|+.|+++.|.. ....+.. ...+++|+.|++++| .--.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 478 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDE 478 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHH
Confidence 4 78888888874 334444321 133366777777765542 1111111 133566777777766 2111
Q ss_pred ---cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEecc
Q 035893 600 ---EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGC 644 (755)
Q Consensus 600 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (755)
.....+++|++|++++|.+...... ..+..+++|++|++++|
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIA---AAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHH---HHHHHCSSCCEEEEESC
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHH---HHHHhcCccCeeECcCC
Confidence 2234456677777777764332221 22345666777777764
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.3e-21 Score=221.44 Aligned_cols=348 Identities=10% Similarity=0.015 Sum_probs=202.0
Q ss_pred cCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcc----cCccccCCCCccEEEEccCCCc----ccC
Q 035893 314 LKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVK----LPQSSLSLSSLREIEICKCSSL----VSF 385 (755)
Q Consensus 314 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l----~~~ 385 (755)
|++|++.+|..+.. ..+......+++|++|++++|...+. ++.....+++|++|++++|..- ..+
T Consensus 140 L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 140 LETLKLDKCSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp CCEEEEESCEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred CcEEECcCCCCcCH-------HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 88888888764332 12333344568888888888864332 3334456788888888877532 112
Q ss_pred CC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCccccc----ccccCCCCCcEEeeeCCcCCCCCccc
Q 035893 386 PE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYI----AEVQLPPSLKQLDIYNCDNIRTLTVE 460 (755)
Q Consensus 386 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~~~L~~L~l~~~~~L~~l~~~ 460 (755)
+. ...+++|++|++++|. +..++..+ ..+++|++|+++++...... .....+++|+.++++++. ...+
T Consensus 213 ~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l--- 285 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM--- 285 (592)
T ss_dssp HHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTG---
T ss_pred HHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHH---
Confidence 11 2347888888888876 34455443 67788888888753332111 111334566666665531 1111
Q ss_pred ccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCe
Q 035893 461 EGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLET 540 (755)
Q Consensus 461 ~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 540 (755)
+.....+++|+.|++++|. +... .+.. ..+.+ ++|+.|+++++-....++.....+++|++
T Consensus 286 --------~~~~~~~~~L~~L~Ls~~~-l~~~--------~~~~-~~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 286 --------PILFPFAAQIRKLDLLYAL-LETE--------DHCT-LIQKC-PNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp --------GGGGGGGGGCCEEEETTCC-CCHH--------HHHH-HHTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred --------HHHHhhcCCCcEEecCCCc-CCHH--------HHHH-HHHhC-cCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 1122345578888877766 3321 0101 02333 68888888855333444554566888888
Q ss_pred EEEec----------CCCCCc--cCCCCCCCCCceeEEeccCcCcccccccCC-CCCCcceeEeCCcC--CCCcc-----
Q 035893 541 ISISN----------CENLVS--FPEGGLPCAKLRTLKIYDCKRLKALPKGLH-NLSTLQYLTIGGAL--PSLEE----- 600 (755)
Q Consensus 541 L~l~~----------~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~-~l~~L~~L~ls~~~--~~l~~----- 600 (755)
|++++ |..++. ++.....+++|++|+++.+......+..+. .+++|+.|+++++- ..+..
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 88884 545443 222223477888888866654443333343 37888888886320 22221
Q ss_pred ----CCCCCCceeeEeecCCc--ccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecc
Q 035893 601 ----EDGLPTNLHFLKIEGNM--EIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIF 674 (755)
Q Consensus 601 ----~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 674 (755)
....+++|++|+++.|. +....+. .....+++|++|++++|......++... ..+++|++|+++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~ 496 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLS---YIGQYSPNVRWMLLGYVGESDEGLMEFS-------RGCPNLQKLEMR 496 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHH---HHHHSCTTCCEEEECSCCSSHHHHHHHH-------TCCTTCCEEEEE
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHH---HHHHhCccceEeeccCCCCCHHHHHHHH-------hcCcccCeeecc
Confidence 13447888888887655 3333222 2234578888888887532222333222 356888888888
Q ss_pred cCCCCcc--ccccccCCCCccEEeeCCCCCCCCC
Q 035893 675 SFPSLER--LSSSIVDLQNLTQLDLGDCPKLKYF 706 (755)
Q Consensus 675 ~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l 706 (755)
+|+ ++. ++.....+++|++|++++|+ ++..
T Consensus 497 ~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 497 GCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp SCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred CCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 876 443 44455678888888888884 5543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.4e-19 Score=188.52 Aligned_cols=283 Identities=17% Similarity=0.173 Sum_probs=171.3
Q ss_pred CCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc--cCCCCCcEE
Q 035893 369 SSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV--QLPPSLKQL 446 (755)
Q Consensus 369 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L 446 (755)
.+++.++++++ .+..+|.. ..++|++|++++|......+..+ ..+++|++|++++| .++.+... ...++|++|
T Consensus 33 c~l~~l~~~~~-~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKE-ISPDTTLLDLQNNDISELRKDDF--KGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSS-CCSSCCSC-CCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCC-CccccCCC-CCCCCeEEECCCCcCCccCHhHh--hCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEE
Confidence 36899999888 46667643 35899999999998443333344 78899999999984 57666433 234567777
Q ss_pred eeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccch
Q 035893 447 DIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLE 526 (755)
Q Consensus 447 ~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 526 (755)
+++++. ++.++. .++++|++|++++|....
T Consensus 108 ~L~~n~-l~~l~~-------------------------------------------------~~~~~L~~L~l~~n~i~~ 137 (332)
T 2ft3_A 108 YISKNH-LVEIPP-------------------------------------------------NLPSSLVELRIHDNRIRK 137 (332)
T ss_dssp ECCSSC-CCSCCS-------------------------------------------------SCCTTCCEEECCSSCCCC
T ss_pred ECCCCc-CCccCc-------------------------------------------------cccccCCEEECCCCccCc
Confidence 776643 222220 111578888888887665
Q ss_pred hhhhhcCCCCCcCeEEEecCCCCC--ccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCC
Q 035893 527 LIAERLDNNTSLETISISNCENLV--SFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EED 602 (755)
Q Consensus 527 ~~~~~l~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~ 602 (755)
..+..+..+++|+.|++++|.... ..+..+..+ +|++|++++|. +..+|..+. ++|++|+++++ +..+. ..+
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHh
Confidence 555567888888888888885421 334444445 78888888887 444555443 67777777776 33333 345
Q ss_pred CCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccc
Q 035893 603 GLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERL 682 (755)
Q Consensus 603 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 682 (755)
..+++|++|++++|.+....+ ..+..+++|++|++++| .+..+|... ..+++|++|++++ +.++.+
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~lp~~l-------~~l~~L~~L~l~~-N~l~~~ 279 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNN--KLSRVPAGL-------PDLKLLQVVYLHT-NNITKV 279 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSS--CCCBCCTTG-------GGCTTCCEEECCS-SCCCBC
T ss_pred cCCCCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCC--cCeecChhh-------hcCccCCEEECCC-CCCCcc
Confidence 566677777777776655433 34566677777777763 333444332 3556666666666 355555
Q ss_pred cc-cccC------CCCccEEeeCCCCCCC-CCCCCCC--cccccceeecCCc
Q 035893 683 SS-SIVD------LQNLTQLDLGDCPKLK-YFPEKGL--PSSLLRLNIAGCP 724 (755)
Q Consensus 683 ~~-~~~~------~~~L~~L~l~~c~~l~-~l~~~~~--~~~L~~L~i~~c~ 724 (755)
+. .+.. .++|+.|++++|+... .+++..+ +++|+.+++++|.
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 43 2221 3556666666664221 2333222 5566666666553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.3e-19 Score=186.79 Aligned_cols=262 Identities=15% Similarity=0.214 Sum_probs=151.2
Q ss_pred CCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccc--cCCCCCcEE
Q 035893 369 SSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEV--QLPPSLKQL 446 (755)
Q Consensus 369 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L 446 (755)
.+++.++++++ .+..+|. ...+.+++|++++|. +..++...+ ..+++|++|++++ +.++.+... ...++|++|
T Consensus 31 c~l~~l~~~~~-~l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDL-GLEKVPK-DLPPDTALLDLQNNK-ITEIKDGDF-KNLKNLHTLILIN-NKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTS-CCCSCCC-SCCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCC-CccccCc-cCCCCCeEEECCCCc-CCEeChhhh-ccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEE
Confidence 47888998887 4566664 335789999999998 444554333 7889999999988 456665332 224556666
Q ss_pred eeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccch
Q 035893 447 DIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLE 526 (755)
Q Consensus 447 ~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 526 (755)
+++++. ++.++ ..++++|++|++++|....
T Consensus 106 ~Ls~n~-l~~l~-------------------------------------------------~~~~~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 106 YLSKNQ-LKELP-------------------------------------------------EKMPKTLQELRVHENEITK 135 (330)
T ss_dssp ECCSSC-CSBCC-------------------------------------------------SSCCTTCCEEECCSSCCCB
T ss_pred ECCCCc-CCccC-------------------------------------------------hhhcccccEEECCCCcccc
Confidence 666543 22222 0112578888888887766
Q ss_pred hhhhhcCCCCCcCeEEEecCCCCC--ccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCccCCCC
Q 035893 527 LIAERLDNNTSLETISISNCENLV--SFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGL 604 (755)
Q Consensus 527 ~~~~~l~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~ 604 (755)
..+..+..+++|++|++++|.... ..+..+..+++|++|++++|. +..+|..+. ++|++|++++|
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n---------- 202 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGN---------- 202 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTS----------
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCC----------
Confidence 666667788888888888874422 234445556777777777766 333443322 45555555544
Q ss_pred CCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc
Q 035893 605 PTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS 684 (755)
Q Consensus 605 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 684 (755)
.+....+ ..+..+++|++|++++| .+..++.. .+..+++|++|+++++ .++.+|.
T Consensus 203 ------------~l~~~~~----~~~~~l~~L~~L~Ls~n--~l~~~~~~------~~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 203 ------------KITKVDA----ASLKGLNNLAKLGLSFN--SISAVDNG------SLANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp ------------CCCEECT----GGGTTCTTCCEEECCSS--CCCEECTT------TGGGSTTCCEEECCSS-CCSSCCT
T ss_pred ------------cCCccCH----HHhcCCCCCCEEECCCC--cCceeChh------hccCCCCCCEEECCCC-cCccCCh
Confidence 4333222 23445555555555542 22222211 1124455555555553 4555555
Q ss_pred cccCCCCccEEeeCCCCCCCCCCCCCC--------cccccceeecCCc
Q 035893 685 SIVDLQNLTQLDLGDCPKLKYFPEKGL--------PSSLLRLNIAGCP 724 (755)
Q Consensus 685 ~~~~~~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~i~~c~ 724 (755)
.+..+++|++|++++| .++.++...+ ..+++.|+++++|
T Consensus 258 ~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 258 GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 5556666666666666 4555554333 2445566666665
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.7e-20 Score=193.27 Aligned_cols=179 Identities=13% Similarity=0.115 Sum_probs=110.2
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCC-CceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCA-KLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
+|++|++++|...+.+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.....+|..+..++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~------- 198 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------- 198 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-------
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-------
Confidence 455555555554444555555555555555555533334444444444 555555555554444444443333
Q ss_pred CCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceE
Q 035893 592 GGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSL 671 (755)
Q Consensus 592 s~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 671 (755)
|++|++++|.+....+ ..+..+++|++|++++|. ....++. +..+++|++|
T Consensus 199 ----------------L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~--------~~~l~~L~~L 249 (313)
T 1ogq_A 199 ----------------LAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAKNS-LAFDLGK--------VGLSKNLNGL 249 (313)
T ss_dssp ----------------CSEEECCSSEEEECCG----GGCCTTSCCSEEECCSSE-ECCBGGG--------CCCCTTCCEE
T ss_pred ----------------ccEEECcCCcccCcCC----HHHhcCCCCCEEECCCCc-eeeecCc--------ccccCCCCEE
Confidence 5555555555554333 446777777777777732 1112222 1357788888
Q ss_pred ecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCcchh
Q 035893 672 TIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPLIE 727 (755)
Q Consensus 672 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~ 727 (755)
+++++.....+|..+..+++|++|++++|+..+.+|..+-+++|+.+++++|+.+.
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 88886444478888999999999999999544477876668899999999998765
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.1e-20 Score=191.31 Aligned_cols=221 Identities=17% Similarity=0.127 Sum_probs=147.3
Q ss_pred ccccEEEEecCCCCc--ccCccccCCCCccEEEEcc-CCCcccCCC-ccCCCCccEEEeccCCCCcccchhhhccCCCCc
Q 035893 345 CRLEYLKLSNCEGLV--KLPQSSLSLSSLREIEICK-CSSLVSFPE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSL 420 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 420 (755)
.+++.|++++|...+ .+|..++.+++|++|++++ |.....+|. +..+++|++|++++|...+.+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 478889999988777 7888899999999999985 654445553 5568899999999988665777665 778888
Q ss_pred cEEEeccCCcccc-cccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcc
Q 035893 421 EILIILYCNSLTY-IAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELP 499 (755)
Q Consensus 421 ~~L~l~~c~~l~~-~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~ 499 (755)
++|++++| .++. ++..
T Consensus 128 ~~L~Ls~N-~l~~~~p~~-------------------------------------------------------------- 144 (313)
T 1ogq_A 128 VTLDFSYN-ALSGTLPPS-------------------------------------------------------------- 144 (313)
T ss_dssp CEEECCSS-EEESCCCGG--------------------------------------------------------------
T ss_pred CEEeCCCC-ccCCcCChH--------------------------------------------------------------
Confidence 88888874 3332 2110
Q ss_pred hhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCC-CcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccc
Q 035893 500 ATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNT-SLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPK 578 (755)
Q Consensus 500 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 578 (755)
++.+ ++|++|++++|...+.+|..+..++ +|+.|++++|...+.+|..+..++ |++|++++|......|.
T Consensus 145 -------~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 145 -------ISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp -------GGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred -------HhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH
Confidence 1111 4667777777766656666666666 777777777754445666565555 77778877776666666
Q ss_pred cCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 579 GLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 579 ~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
.+..+++|+.|++++| +....+.+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP----QGLTQLKFLHSLNVSF 277 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC----GGGGGCTTCCEEECCS
T ss_pred HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC----hHHhcCcCCCEEECcC
Confidence 7777777777777766 22222334455666666666666554333 3455666666666665
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.7e-19 Score=186.82 Aligned_cols=174 Identities=21% Similarity=0.278 Sum_probs=84.4
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCC---------CCCceeEEeccCcCcccccccCCCC
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLP---------CAKLRTLKIYDCKRLKALPKGLHNL 583 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~---------l~~L~~L~l~~~~~l~~~~~~l~~l 583 (755)
+|++|++++|... .+|..+..+++|++|++++|...+.+|..+.. +++|++|++++|.. ..+|..+..+
T Consensus 128 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l 205 (328)
T 4fcg_A 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANL 205 (328)
T ss_dssp TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGC
T ss_pred CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCC
Confidence 3444444444322 33334444455555555554444444443322 45555555555542 2444445555
Q ss_pred CCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCC
Q 035893 584 STLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTAL 662 (755)
Q Consensus 584 ~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 662 (755)
++|++|++++| +..++..++.+++|++|++++|......+ ..+..+++|++|++++ +.....+|...
T Consensus 206 ~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~-n~~~~~~p~~~------- 273 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKD-CSNLLTLPLDI------- 273 (328)
T ss_dssp TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTT-CTTCCBCCTTG-------
T ss_pred CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCC-CCchhhcchhh-------
Confidence 55555555544 22222223334444444444444443332 3455556666666665 23344444332
Q ss_pred CCCCccceEecccCCCCccccccccCCCCccEEeeCCC
Q 035893 663 PLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDC 700 (755)
Q Consensus 663 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 700 (755)
..+++|++|++++|+.++.+|..+..+++|+.+++..+
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 34555666666665666666666666666666665544
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.2e-19 Score=183.92 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=161.9
Q ss_pred cccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC-ccCCCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 344 SCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 344 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
.++++.|++++|.. ..+|..+..+++|++|++++|... .+|. ++.+++|++|++++|.. ..+|..+ ..+++|++
T Consensus 80 ~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l--~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASI--ASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGG--GGCTTCCE
T ss_pred ccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHH--hcCcCCCE
Confidence 47899999999875 488888999999999999999644 6765 56699999999999984 4777766 78899999
Q ss_pred EEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhh
Q 035893 423 LIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATL 502 (755)
Q Consensus 423 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~ 502 (755)
|++++|+....+|.. +....+.+.
T Consensus 155 L~L~~n~~~~~~p~~-----~~~~~~~~~--------------------------------------------------- 178 (328)
T 4fcg_A 155 LSIRACPELTELPEP-----LASTDASGE--------------------------------------------------- 178 (328)
T ss_dssp EEEEEETTCCCCCSC-----SEEEC-CCC---------------------------------------------------
T ss_pred EECCCCCCccccChh-----Hhhccchhh---------------------------------------------------
Confidence 999998766655432 111111000
Q ss_pred hhhhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCC
Q 035893 503 ESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHN 582 (755)
Q Consensus 503 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~ 582 (755)
++.+ ++|++|++++|... .+|..+..+++|++|++++| .+..+|..+..+++|++|++++|...+.+|..+..
T Consensus 179 ----~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 179 ----HQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp ----EEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred ----hccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 1111 46777788777544 66666777888888888887 45566666777788888888888777777777777
Q ss_pred CCCcceeEeCCcCCCC---ccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 583 LSTLQYLTIGGALPSL---EEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 583 l~~L~~L~ls~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+++|++|++++| ... +..+..+++|++|++++|+.....| ..+.++++|+.+++..
T Consensus 252 l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP----~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 252 RAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP----SLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----GGGGGSCTTCEEECCG
T ss_pred CCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhcc----HHHhhccCceEEeCCH
Confidence 777888887776 222 2344556677777777776666554 4567777777777765
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.6e-21 Score=220.89 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=61.8
Q ss_pred cCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCC------CcccCccccCCCCccEE-EEccCCCc
Q 035893 310 NICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEG------LVKLPQSSLSLSSLREI-EICKCSSL 382 (755)
Q Consensus 310 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~L-~l~~~~~l 382 (755)
++++|++|++.+|..++.+ ......+++|+.|++.++.. ...++..+.++++|+.| .+.+. ..
T Consensus 209 ~~~~L~~L~L~~~~~~~~l---------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~ 278 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKL---------ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VP 278 (594)
T ss_dssp HCTTCCEEECCTTSCHHHH---------HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CG
T ss_pred hCCCCcEEecCCCCcHHHH---------HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-ch
Confidence 3556666666666444332 12222346667766655532 11223345666666666 23222 11
Q ss_pred ccCCCcc-CCCCccEEEeccCCCCccc-chhhhccCCCCccEEEeccCCcccccccc-cCCCCCcEEeeeCC
Q 035893 383 VSFPEVA-LPSKLKKIQISYCDALKSL-PEAWMCHTNSSLEILIILYCNSLTYIAEV-QLPPSLKQLDIYNC 451 (755)
Q Consensus 383 ~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~ 451 (755)
..++... .+++|++|++++|. +... ...++ ..+++|++|++.+|-.-..++.. ...++|++|++.+|
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~-~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLL-CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHH-TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECS
T ss_pred hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHH-hcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecC
Confidence 2222221 36777777777776 3322 11111 56677777777765111111111 12345666666544
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=5.5e-21 Score=209.32 Aligned_cols=353 Identities=16% Similarity=0.127 Sum_probs=208.6
Q ss_pred cccccEEEEecCCCCc----ccCccccCCCCccEEEEccCCCcccCC-Cc-cCCC----CccEEEeccCCCCc----ccc
Q 035893 344 SCRLEYLKLSNCEGLV----KLPQSSLSLSSLREIEICKCSSLVSFP-EV-ALPS----KLKKIQISYCDALK----SLP 409 (755)
Q Consensus 344 ~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~-~~l~----~L~~L~l~~~~~~~----~~~ 409 (755)
+++|++|++++|.... .++..+..+++|++|++++|..-...+ .+ ..++ +|++|++++|.... .++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3677777777776432 234456666777777777764222111 11 1122 57777777776332 223
Q ss_pred hhhhccCCCCccEEEeccCCcccccccc-------cCCCCCcEEeeeCCcCCCCCcccccccccCCCcccccccccccee
Q 035893 410 EAWMCHTNSSLEILIILYCNSLTYIAEV-------QLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLV 482 (755)
Q Consensus 410 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~ 482 (755)
..+ ..+++|++|++++|. +++.... ...++|++|++++|. ++...... .+.....+++|+.|+
T Consensus 107 ~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~------l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 107 STL--RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP------LASVLRAKPDFKELT 176 (461)
T ss_dssp HHT--TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH------HHHHHHHCTTCCEEE
T ss_pred HHH--ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH------HHHHHhhCCCCCEEE
Confidence 333 566777777777643 4432111 112357777776653 22211000 000111234566666
Q ss_pred eccCCCccccccCCCcchhhhhhh---ccCCCCCcceEEEccCccchh----hhhhcCCCCCcCeEEEecCCCCCcc---
Q 035893 483 IWECPSLTCIFSKNELPATLESLE---VGNLPPSLKSLRVNFCSKLEL----IAERLDNNTSLETISISNCENLVSF--- 552 (755)
Q Consensus 483 i~~c~~l~~l~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~~--- 552 (755)
++++. +. +...... .....++|++|++++|..... ++..+..+++|++|++++|. ++..
T Consensus 177 L~~n~-i~---------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~ 245 (461)
T 1z7x_W 177 VSNND-IN---------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMA 245 (461)
T ss_dssp CCSSB-CH---------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH
T ss_pred CcCCC-cc---------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHH
Confidence 55433 21 1110000 111125899999999977653 56777789999999999994 4332
Q ss_pred ---CCCCCCCCCceeEEeccCcCccc----ccccCCCCCCcceeEeCCcCCCCc--------cCCCCCCceeeEeecCCc
Q 035893 553 ---PEGGLPCAKLRTLKIYDCKRLKA----LPKGLHNLSTLQYLTIGGALPSLE--------EEDGLPTNLHFLKIEGNM 617 (755)
Q Consensus 553 ---~~~~~~l~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~ls~~~~~l~--------~~~~~~~~L~~L~l~~~~ 617 (755)
+.....+++|++|++++|..... ++..+..+++|++|++++| .--. ......++|++|++++|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 22223478999999999975442 5666777899999999998 3211 122334699999999999
Q ss_pred ccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCC-CCCCccceEecccCCCCc-----cccccccCCCC
Q 035893 618 EIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTAL-PLPASLTSLTIFSFPSLE-----RLSSSIVDLQN 691 (755)
Q Consensus 618 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~ 691 (755)
+.......++..+..+++|++|++++|. +....... ..+.+ ...++|++|++++| .++ .++..+..+++
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~--l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNR--LEDAGVRE--LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSB--CHHHHHHH--HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCc--cccccHHH--HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCC
Confidence 8876544444567788999999999853 33221110 00000 12679999999997 555 67888889999
Q ss_pred ccEEeeCCCCCCCCCCCCC-------CcccccceeecCCc
Q 035893 692 LTQLDLGDCPKLKYFPEKG-------LPSSLLRLNIAGCP 724 (755)
Q Consensus 692 L~~L~l~~c~~l~~l~~~~-------~~~~L~~L~i~~c~ 724 (755)
|++|++++| .++...... ...+|+.|++.++.
T Consensus 400 L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 400 LRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred ccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 999999999 455431110 12356666665544
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=2.6e-20 Score=211.05 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=67.5
Q ss_pred ccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcc--cCccccCCCCccEEEEccCCCcccC-
Q 035893 309 NNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVK--LPQSSLSLSSLREIEICKCSSLVSF- 385 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~- 385 (755)
..+++|++|++++|. ++.. ....+...+++|++|++++|...+. ++.....+++|++|++++|. +...
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~-------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDD-------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHH-------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC
T ss_pred HhCCCCCeEEeeCcE-EcHH-------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc
Confidence 455667777777663 3321 1112222346777777777643332 33334456777777777764 2221
Q ss_pred ----CCc-cCCCCccEEEeccCC-CCcc-cchhhhccCCCCccEEEeccCCcccccccc-cCCCCCcEEeeeCC
Q 035893 386 ----PEV-ALPSKLKKIQISYCD-ALKS-LPEAWMCHTNSSLEILIILYCNSLTYIAEV-QLPPSLKQLDIYNC 451 (755)
Q Consensus 386 ----~~~-~~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~ 451 (755)
+.. ..+++|++|++++|. .+.. ....+. ..+++|++|++++|..++.++.. ...++|+.|+++.+
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 111 135677777777665 1111 011111 34677777777776555554322 22345666655443
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.6e-17 Score=185.20 Aligned_cols=256 Identities=30% Similarity=0.400 Sum_probs=177.3
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
.+++.|++++|.. +.+|..+. ++|+.|++++| .++.+|. .+++|++|++++|. +..+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 4689999998874 47777655 79999999999 4667776 68999999999998 555653 568899999
Q ss_pred eccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhh
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLES 504 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~ 504 (755)
+++ +.++.++. .+++|+.|+++++. ++.++.
T Consensus 108 Ls~-N~l~~l~~--~l~~L~~L~L~~N~-l~~lp~--------------------------------------------- 138 (622)
T 3g06_A 108 IFS-NPLTHLPA--LPSGLCKLWIFGNQ-LTSLPV--------------------------------------------- 138 (622)
T ss_dssp ECS-CCCCCCCC--CCTTCCEEECCSSC-CSCCCC---------------------------------------------
T ss_pred CcC-CcCCCCCC--CCCCcCEEECCCCC-CCcCCC---------------------------------------------
Confidence 988 57777775 56778888887753 433331
Q ss_pred hhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCC
Q 035893 505 LEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLS 584 (755)
Q Consensus 505 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~ 584 (755)
.+++|++|++++|... .+|. .+++|+.|++++| .++.+| ..+++|+.|++++|. +..+|.. ++
T Consensus 139 -----~l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~ 201 (622)
T 3g06_A 139 -----LPPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPTL---PS 201 (622)
T ss_dssp -----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCCC---CT
T ss_pred -----CCCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCCc---cc
Confidence 1146777777776443 2332 3466777777776 455565 235677777777776 3344432 36
Q ss_pred CcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCC
Q 035893 585 TLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALP 663 (755)
Q Consensus 585 ~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 663 (755)
+|+.|++++| +..++ ..+++|++|++++|.+...+ ..+++|++|++++| .+..+|.
T Consensus 202 ~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N--~L~~lp~---------- 258 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGN--RLTSLPM---------- 258 (622)
T ss_dssp TCCEEECCSSCCSSCC---CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS--CCSCCCC----------
T ss_pred hhhEEECcCCcccccC---CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCC--CCCcCCc----------
Confidence 7777777776 22222 23577888888888665421 34578888888874 4555553
Q ss_pred CCCccceEecccCCCCccccccccCCCCccEEeeCCCCC
Q 035893 664 LPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPK 702 (755)
Q Consensus 664 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 702 (755)
.+++|++|++++| .++.+|..+..+++|+.|++++|+.
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 4678888888884 7778888888888888899888853
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=182.24 Aligned_cols=183 Identities=16% Similarity=0.122 Sum_probs=96.9
Q ss_pred CCcceEEEccCccchhhh-hhcCCCCCcCeEEEecCCCCCccC-CCCCCCCCceeEEeccCcCcccccccCCCCCCccee
Q 035893 512 PSLKSLRVNFCSKLELIA-ERLDNNTSLETISISNCENLVSFP-EGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYL 589 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 589 (755)
++|++|++++|......+ ..+..+++|++|++++|..++.++ ..+..+++|++|++++|......|..+..+++|++|
T Consensus 124 ~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 467777777765443222 256677777777777775555543 455667777777777777555556666666666666
Q ss_pred EeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCc
Q 035893 590 TIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPAS 667 (755)
Q Consensus 590 ~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (755)
+++++ +..++ .....+++|++|++++|.+....+..+ ........++.++++++.
T Consensus 204 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~~~~l~~l~L~~~~---------------------- 260 (353)
T 2z80_A 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-STGETNSLIKKFTFRNVK---------------------- 260 (353)
T ss_dssp EEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCB----------------------
T ss_pred cCCCCccccchhhhhhhcccccEEECCCCcccccccccc-ccccccchhhcccccccc----------------------
Confidence 66665 11111 112234556666666555443322110 011223344444444321
Q ss_pred cceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCc
Q 035893 668 LTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCP 724 (755)
Q Consensus 668 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 724 (755)
+.+ +.+..+|..+..+++|++|++++| .++.+|...+ +++|++|++++|+
T Consensus 261 -----l~~-~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 -----ITD-ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -----CCH-HHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----ccC-cchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 111 112234555566666666666666 4556665432 5566666666665
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=181.38 Aligned_cols=225 Identities=18% Similarity=0.173 Sum_probs=122.9
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--ccCCCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
++|++|++++|...+..+..+..+++|++|++++|. +..++. +..+++|++|++++|. +..++...+ ..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCE
Confidence 567777777776443333356777777777777764 333322 4456777777777776 334444422 56667777
Q ss_pred EEeccCCccccccc-ccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchh
Q 035893 423 LIILYCNSLTYIAE-VQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPAT 501 (755)
Q Consensus 423 L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~ 501 (755)
|++++ +.++.++. ..
T Consensus 129 L~L~~-n~l~~l~~~~~--------------------------------------------------------------- 144 (353)
T 2z80_A 129 LNLLG-NPYKTLGETSL--------------------------------------------------------------- 144 (353)
T ss_dssp EECTT-CCCSSSCSSCS---------------------------------------------------------------
T ss_pred EECCC-CCCcccCchhh---------------------------------------------------------------
Confidence 77766 34444432 10
Q ss_pred hhhhhccCCCCCcceEEEccCccchhh-hhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccccccc-
Q 035893 502 LESLEVGNLPPSLKSLRVNFCSKLELI-AERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKG- 579 (755)
Q Consensus 502 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~- 579 (755)
++.+ ++|++|++++|...+.+ +..+..+++|++|++++|......+..+..+++|++|++++|.. ..+|..
T Consensus 145 -----~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~ 217 (353)
T 2z80_A 145 -----FSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF 217 (353)
T ss_dssp -----CTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH
T ss_pred -----hccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh
Confidence 1111 35555555555333222 34455566666666666643333355555566666666666653 333332
Q ss_pred CCCCCCcceeEeCCc-CCCCc----cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 580 LHNLSTLQYLTIGGA-LPSLE----EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 580 l~~l~~L~~L~ls~~-~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+..+++|+.|++++| +.... ........++.++++++.+.......++..+..+++|++|++++
T Consensus 218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 234566666666665 22211 11233466778888888766654433334566677777777776
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=4.2e-17 Score=181.86 Aligned_cols=255 Identities=28% Similarity=0.357 Sum_probs=195.9
Q ss_pred CCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEee
Q 035893 369 SSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDI 448 (755)
Q Consensus 369 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 448 (755)
.+++.|++++|. ++.+|... .++|++|++++|. +..+|. .+++|++|++++| .++.++. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGN-QLTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCCC-cCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEEC
Confidence 468999999884 66777533 3899999999997 556664 5689999999984 6888775 5677888888
Q ss_pred eCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhh
Q 035893 449 YNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELI 528 (755)
Q Consensus 449 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 528 (755)
+++. ++.++ . .+++|+.|++++|... .+
T Consensus 109 s~N~-l~~l~------------------------------------------------~--~l~~L~~L~L~~N~l~-~l 136 (622)
T 3g06_A 109 FSNP-LTHLP------------------------------------------------A--LPSGLCKLWIFGNQLT-SL 136 (622)
T ss_dssp CSCC-CCCCC------------------------------------------------C--CCTTCCEEECCSSCCS-CC
T ss_pred cCCc-CCCCC------------------------------------------------C--CCCCcCEEECCCCCCC-cC
Confidence 7753 33322 0 2368999999998644 45
Q ss_pred hhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCc
Q 035893 529 AERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTN 607 (755)
Q Consensus 529 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~ 607 (755)
|. .+++|+.|++++| .+..+|. .+++|+.|++++|. +..+| ..+++|+.|++++| +..+ ...+++
T Consensus 137 p~---~l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~l---~~~~~~ 202 (622)
T 3g06_A 137 PV---LPPGLQELSVSDN-QLASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLASL---PTLPSE 202 (622)
T ss_dssp CC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCC---CCCCTT
T ss_pred CC---CCCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCCC---CCccch
Confidence 54 3589999999999 6666765 24789999999998 45566 56789999999998 3332 234689
Q ss_pred eeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCcccccccc
Q 035893 608 LHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIV 687 (755)
Q Consensus 608 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 687 (755)
|+.|++++|.+.... ..+++|++|++++| .+..+| ..+++|+.|++++| .++.+|.
T Consensus 203 L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N--~L~~lp----------~~l~~L~~L~Ls~N-~L~~lp~--- 258 (622)
T 3g06_A 203 LYKLWAYNNRLTSLP--------ALPSGLKELIVSGN--RLTSLP----------VLPSELKELMVSGN-RLTSLPM--- 258 (622)
T ss_dssp CCEEECCSSCCSSCC--------CCCTTCCEEECCSS--CCSCCC----------CCCTTCCEEECCSS-CCSCCCC---
T ss_pred hhEEECcCCcccccC--------CCCCCCCEEEccCC--ccCcCC----------CCCCcCcEEECCCC-CCCcCCc---
Confidence 999999999876532 23588999999984 555566 25789999999995 8888986
Q ss_pred CCCCccEEeeCCCCCCCCCCCCCC-cccccceeecCCcc
Q 035893 688 DLQNLTQLDLGDCPKLKYFPEKGL-PSSLLRLNIAGCPL 725 (755)
Q Consensus 688 ~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c~~ 725 (755)
.+++|++|++++| .++.+|.... +++|+.|++++|+.
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 6799999999999 7888887422 78999999999984
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=1.5e-20 Score=205.81 Aligned_cols=356 Identities=18% Similarity=0.130 Sum_probs=224.1
Q ss_pred ccccEEEEecCCCCcccCc-cccCCCCccEEEEccCCCcc----cCC-CccCCCCccEEEeccCCCCcccchhhhccCCC
Q 035893 345 CRLEYLKLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLV----SFP-EVALPSKLKKIQISYCDALKSLPEAWMCHTNS 418 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~----~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 418 (755)
++|++|++++|........ .+..+++|++|++++|.... .++ .+..+++|++|++++|......+..+. ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL-QGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH-HTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH-HHHh
Confidence 7899999999876543322 37788999999999996332 122 234579999999999984433333332 4455
Q ss_pred ----CccEEEeccCCccccc-----cc-ccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCC
Q 035893 419 ----SLEILIILYCNSLTYI-----AE-VQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPS 488 (755)
Q Consensus 419 ----~L~~L~l~~c~~l~~~-----~~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~ 488 (755)
+|++|++++| .++.. +. ....++|++|+++++. +....+.. ... ......++|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~----~l~~~~~~L~~L~L~~n~- 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCE----GLLDPQCRLEKLQLEYCS- 153 (461)
T ss_dssp STTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHH----HHTSTTCCCCEEECTTSC-
T ss_pred hCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHH-HHH----HHhcCCCcceEEECCCCC-
Confidence 7999999996 46532 22 1345679999998875 33211100 000 001113468888887763
Q ss_pred ccccccCCCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcC-----CCCCcCeEEEecCCCCCc----cCCCCCCC
Q 035893 489 LTCIFSKNELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLD-----NNTSLETISISNCENLVS----FPEGGLPC 559 (755)
Q Consensus 489 l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~l~~----~~~~~~~l 559 (755)
+... .. ..+... +... ++|++|++++|......+..+. ..++|++|++++|..... ++..+..+
T Consensus 154 l~~~----~~-~~l~~~-l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 154 LSAA----SC-EPLASV-LRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp CBGG----GH-HHHHHH-HHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred CCHH----HH-HHHHHH-HhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 2220 00 011111 1222 5899999999986654433332 367999999999943332 34455568
Q ss_pred CCceeEEeccCcCcccc-----cccCCCCCCcceeEeCCc-CCC-----CccCCCCCCceeeEeecCCcccchhhhhcCc
Q 035893 560 AKLRTLKIYDCKRLKAL-----PKGLHNLSTLQYLTIGGA-LPS-----LEEEDGLPTNLHFLKIEGNMEIWKSMIERGR 628 (755)
Q Consensus 560 ~~L~~L~l~~~~~l~~~-----~~~l~~l~~L~~L~ls~~-~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 628 (755)
++|++|++++|...... +.....+++|++|++++| +.. +......+++|++|++++|.+....+..+..
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 89999999999743321 223346899999999998 222 1123344789999999999876654432222
Q ss_pred Cc-CCCCCccEEEEeccCCCcc---cccccccccCCCCCCCCccceEecccCCCCcccc-cccc----C-CCCccEEeeC
Q 035893 629 GF-HRFSSLRELIIRGCDDDMV---SFPLEDKRLGTALPLPASLTSLTIFSFPSLERLS-SSIV----D-LQNLTQLDLG 698 (755)
Q Consensus 629 ~l-~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~----~-~~~L~~L~l~ 698 (755)
.+ ...++|++|++++|..... .++.. +..+++|++|+++++ .+.... ..+. . .++|++|+++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-------l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSV-------LAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHH-------HHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHH-------HhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECC
Confidence 22 2346999999998532211 12221 235689999999996 555532 2232 2 7899999999
Q ss_pred CCCCCC-----CCCCC-CCcccccceeecCCcc
Q 035893 699 DCPKLK-----YFPEK-GLPSSLLRLNIAGCPL 725 (755)
Q Consensus 699 ~c~~l~-----~l~~~-~~~~~L~~L~i~~c~~ 725 (755)
+| .++ .++.. .-.++|++|++++|+.
T Consensus 379 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 379 DC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 99 566 34431 1168999999999973
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=7.2e-17 Score=174.92 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=94.4
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
+|++|++++|......+..+.++++|++|++++| .++.++. .+..+++|++|++++|......+..+..+++|+.|++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 4555555555444333444555555555555555 3333333 3444555555555555533222234455555555555
Q ss_pred CCcCCCCc----cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCc
Q 035893 592 GGALPSLE----EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPAS 667 (755)
Q Consensus 592 s~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (755)
+++ ..+. ..+..+++|++|++++|.+... ..+..+++|++|++++| .+..++. ..+..+++
T Consensus 168 ~~~-~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~N--~l~~~~~------~~~~~l~~ 232 (440)
T 3zyj_A 168 GEL-KRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLSGN--HLSAIRP------GSFQGLMH 232 (440)
T ss_dssp CCC-TTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSCCEEECTTS--CCCEECT------TTTTTCTT
T ss_pred CCC-CCcceeCcchhhcccccCeecCCCCcCccc------cccCCCcccCEEECCCC--ccCccCh------hhhccCcc
Confidence 543 2222 2344455555555555554432 12455555555655552 2222221 11234555
Q ss_pred cceEecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCc
Q 035893 668 LTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCP 724 (755)
Q Consensus 668 L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 724 (755)
|++|+++++ .++.++. .+..+++|++|++++| .++.++...+ +++|+.|++++||
T Consensus 233 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 666666553 4444433 5556666666666666 4555555433 4566666666655
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=7.1e-17 Score=175.64 Aligned_cols=194 Identities=19% Similarity=0.178 Sum_probs=86.5
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
+|++|++++|......+..+.++++|++|++++| .+..++. .+..+++|++|++++|......+..+.++++|+.|++
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 4444444444433333344444455555555544 2333332 2333445555555554432222223444455555555
Q ss_pred CCcCCCCc----cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCc
Q 035893 592 GGALPSLE----EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPAS 667 (755)
Q Consensus 592 s~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (755)
++| ..+. ..+..+++|++|++++|.+... ..+..+++|++|++++| .+..++... +..+++
T Consensus 179 ~~~-~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~ 243 (452)
T 3zyi_A 179 GEL-KKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGN--HFPEIRPGS------FHGLSS 243 (452)
T ss_dssp CCC-TTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTTS--CCSEECGGG------GTTCTT
T ss_pred CCC-CCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEECcCC--cCcccCccc------ccCccC
Confidence 443 2222 1233444555555555544332 12444555555555542 222221111 234455
Q ss_pred cceEecccCCCCccc-cccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCc
Q 035893 668 LTSLTIFSFPSLERL-SSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCP 724 (755)
Q Consensus 668 L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 724 (755)
|++|+++++ .+..+ +..+..+++|++|++++| .++.++...+ +++|+.|++++||
T Consensus 244 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 555555553 33333 224555555666666555 4555554333 4555555555554
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.9e-17 Score=168.41 Aligned_cols=202 Identities=19% Similarity=0.197 Sum_probs=146.1
Q ss_pred CCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccc-cccCCCCCCcce
Q 035893 510 LPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKAL-PKGLHNLSTLQY 588 (755)
Q Consensus 510 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~ 588 (755)
+|++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|..++.+ +..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3468888888888766665666788888888888888433333666777888888888888744544 567788888888
Q ss_pred eEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCC
Q 035893 589 LTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPA 666 (755)
Q Consensus 589 L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (755)
|++++| +..+. ..+..+++|++|++++|.+....+ ..+..+++|++|++++| .++.++.. .+..++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~------~~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGN--RISSVPER------AFRGLH 177 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCEECTT------TTTTCT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----hHhccCCCccEEECCCC--cccccCHH------HhcCcc
Confidence 888887 33332 446677888888888888765443 45778888888888874 44455432 235678
Q ss_pred ccceEecccCCCCccc-cccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCcc
Q 035893 667 SLTSLTIFSFPSLERL-SSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCPL 725 (755)
Q Consensus 667 ~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 725 (755)
+|++|+++++ .+..+ |..+..+++|++|++++| .++.++...+ +++|++|++++||.
T Consensus 178 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 8888888885 45554 567888888888888888 6777765323 67888888888874
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=169.01 Aligned_cols=155 Identities=18% Similarity=0.123 Sum_probs=73.9
Q ss_pred CcceEEEccCccchhhh-hhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcc-cccccCCCCCCcceeE
Q 035893 513 SLKSLRVNFCSKLELIA-ERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLK-ALPKGLHNLSTLQYLT 590 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~l~~l~~L~~L~ 590 (755)
+|++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 55555555554433322 345555666666666654333334444445555555555555333 2344444444444444
Q ss_pred eCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 591 IGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 591 ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
++ +|.+....+ ..+..+++|++|++++| .+..++... +..+++|++
T Consensus 182 Ls----------------------~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~ 227 (306)
T 2z66_A 182 LS----------------------QCQLEQLSP----TAFNSLSSLQVLNMSHN--NFFSLDTFP------YKCLNSLQV 227 (306)
T ss_dssp CT----------------------TSCCCEECT----TTTTTCTTCCEEECTTS--CCSBCCSGG------GTTCTTCCE
T ss_pred CC----------------------CCCcCCcCH----HHhcCCCCCCEEECCCC--ccCccChhh------ccCcccCCE
Confidence 44 444333222 33455556666666552 222222111 124455555
Q ss_pred EecccCCCCccccccccCCC-CccEEeeCCCC
Q 035893 671 LTIFSFPSLERLSSSIVDLQ-NLTQLDLGDCP 701 (755)
Q Consensus 671 L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~c~ 701 (755)
|+++++......|..+..++ +|++|++++|+
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 55555433333333555553 66666666663
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=1.1e-18 Score=180.19 Aligned_cols=241 Identities=14% Similarity=0.149 Sum_probs=160.8
Q ss_pred hhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCC
Q 035893 340 LCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSS 419 (755)
Q Consensus 340 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 419 (755)
....+++|++|++++|...+..|..+..+++|++|++++|.. ...+.+..+++|++|++++|. +..++ ..++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~Ls~n~-l~~l~------~~~~ 100 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNY-VQELL------VGPS 100 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEEETTCTTCCEEECCSSE-EEEEE------ECTT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-CcchhhhhcCCCCEEECcCCc-ccccc------CCCC
Confidence 334558999999999987666667889999999999999954 444457778999999999987 33333 3478
Q ss_pred ccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcc
Q 035893 420 LEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELP 499 (755)
Q Consensus 420 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~ 499 (755)
|++|++++ +.++.++... +++|++|+++++. ++.+...
T Consensus 101 L~~L~l~~-n~l~~~~~~~-~~~L~~L~l~~N~-l~~~~~~--------------------------------------- 138 (317)
T 3o53_A 101 IETLHAAN-NNISRVSCSR-GQGKKNIYLANNK-ITMLRDL--------------------------------------- 138 (317)
T ss_dssp CCEEECCS-SCCSEEEECC-CSSCEEEECCSSC-CCSGGGB---------------------------------------
T ss_pred cCEEECCC-CccCCcCccc-cCCCCEEECCCCC-CCCccch---------------------------------------
Confidence 99999988 4666665444 3457777776653 2222100
Q ss_pred hhhhhhhccCCCCCcceEEEccCccchhhhhhc-CCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccc
Q 035893 500 ATLESLEVGNLPPSLKSLRVNFCSKLELIAERL-DNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPK 578 (755)
Q Consensus 500 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 578 (755)
.++.+ ++|++|++++|......+..+ ..+++|++|++++| .++.++.. ..+++|++|++++|.. ..+|.
T Consensus 139 ------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~ 208 (317)
T 3o53_A 139 ------DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNKL-AFMGP 208 (317)
T ss_dssp ------CTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSCC-CEECG
T ss_pred ------hhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCCcC-Ccchh
Confidence 01111 578888888887666555544 36788888888888 45555433 3477888888888874 45555
Q ss_pred cCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 579 GLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 579 ~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
.+..+++|+.|++++| +..++..+..+++|++|++++|+....... ..+..+++|+.|++++
T Consensus 209 ~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHHHHHH
T ss_pred hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEEECCC
Confidence 5777788888888777 333334455667777777777776622222 3355666666666654
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.1e-17 Score=172.19 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCC-ccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLV-SFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
++|++|++++|......+..+..+++|++|++++|...+ .+|..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 356666666665555555556666666777666663332 2555566666777777776665444455666666666666
Q ss_pred eCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCC-CccEEEEec
Q 035893 591 IGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFS-SLRELIIRG 643 (755)
Q Consensus 591 ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 643 (755)
+++| +..+. ..+..+++|++|++++|.+....+ ..+..++ +|++|++++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK----QELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS----SSCCCCCTTCCEEECTT
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCH----HHHHhhhccCCEEEccC
Confidence 6665 22222 234445666666666665554433 3345553 666666665
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=4.1e-19 Score=183.44 Aligned_cols=262 Identities=13% Similarity=0.064 Sum_probs=132.2
Q ss_pred ccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC--CccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 347 LEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 347 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
++..+++.+.....+...+..+++|++|++++|. +..++ .+..+++|++|++++|......+ + ..+++|++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E--TTCTTCCEEE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh--h--hhcCCCCEEE
Confidence 4444444443322223334556677777777774 44443 24457777777777776433332 2 5666777777
Q ss_pred eccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhh
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLES 504 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~ 504 (755)
+++| .++.++.. +
T Consensus 87 Ls~n-~l~~l~~~---~--------------------------------------------------------------- 99 (317)
T 3o53_A 87 LNNN-YVQELLVG---P--------------------------------------------------------------- 99 (317)
T ss_dssp CCSS-EEEEEEEC---T---------------------------------------------------------------
T ss_pred CcCC-ccccccCC---C---------------------------------------------------------------
Confidence 7663 44443311 2
Q ss_pred hhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccC-CCC
Q 035893 505 LEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGL-HNL 583 (755)
Q Consensus 505 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l-~~l 583 (755)
+|++|++++|...+..+. .+++|++|++++|......+..+..+++|++|++++|......+..+ ..+
T Consensus 100 --------~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 100 --------SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp --------TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred --------CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 344444444433222211 24455555555553222222234445556666666555433333333 345
Q ss_pred CCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCC
Q 035893 584 STLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTAL 662 (755)
Q Consensus 584 ~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 662 (755)
++|++|++++| +..+ .....+++|++|++++|.+....+ .+..+++|++|++++| .+..+|...
T Consensus 169 ~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~L~~N--~l~~l~~~~------- 233 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGP-----EFQSAAGVTWISLRNN--KLVLIEKAL------- 233 (317)
T ss_dssp TTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECG-----GGGGGTTCSEEECTTS--CCCEECTTC-------
T ss_pred CcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchh-----hhcccCcccEEECcCC--cccchhhHh-------
Confidence 56666666655 1111 222235666666666666554322 2556667777777663 333444322
Q ss_pred CCCCccceEecccCCCC-ccccccccCCCCccEEeeCCCCCCCCC
Q 035893 663 PLPASLTSLTIFSFPSL-ERLSSSIVDLQNLTQLDLGDCPKLKYF 706 (755)
Q Consensus 663 ~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~l 706 (755)
..+++|++|++++++.. ..++..+..+++|+.+++++|+.++..
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 34566666666664333 244556666666666666655444443
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=3.6e-17 Score=161.52 Aligned_cols=200 Identities=16% Similarity=0.152 Sum_probs=158.7
Q ss_pred CCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEecc-CcCccccc-ccCCCCCCc
Q 035893 510 LPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYD-CKRLKALP-KGLHNLSTL 586 (755)
Q Consensus 510 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~-~~~l~~~~-~~l~~l~~L 586 (755)
+|++|++|++++|...+..+..+..+++|++|++++|..++.++. .+..+++|++|++++ |. ++.++ ..+.++++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCC
Confidence 557899999999987666666788999999999999965777775 567799999999999 66 45554 567899999
Q ss_pred ceeEeCCc-CCCCccCCCCCCcee---eEeecCC-cccchhhhhcCcCcCCCCCcc-EEEEeccCCCcccccccccccCC
Q 035893 587 QYLTIGGA-LPSLEEEDGLPTNLH---FLKIEGN-MEIWKSMIERGRGFHRFSSLR-ELIIRGCDDDMVSFPLEDKRLGT 660 (755)
Q Consensus 587 ~~L~ls~~-~~~l~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~ 660 (755)
++|++++| +..++. +..+++|+ +|++++| .+....+ ..+.++++|+ +|++++| .+..++...
T Consensus 108 ~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~L~~~L~l~~n--~l~~i~~~~----- 175 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCNETLTLKLYNN--GFTSVQGYA----- 175 (239)
T ss_dssp CEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBSSEEEEECCSC--CCCEECTTT-----
T ss_pred CEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc----ccccchhcceeEEEcCCC--CCcccCHhh-----
Confidence 99999988 444333 66777777 9999999 6655443 5688999999 9999984 455676543
Q ss_pred CCCCCCccceEecccCCCCccccc-cccCC-CCccEEeeCCCCCCCCCCCCCCcccccceeecCCcch
Q 035893 661 ALPLPASLTSLTIFSFPSLERLSS-SIVDL-QNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPLI 726 (755)
Q Consensus 661 ~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 726 (755)
+.. ++|++|+++++..++.++. .+..+ ++|++|++++| .++.+|.. .+++|+.|++.+++.|
T Consensus 176 -~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 -FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp -TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred -cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 233 7999999999756888876 67888 99999999999 78888875 5779999999988753
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.8e-16 Score=171.81 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=93.3
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
++|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|++|++++|. +..+| .+..+++|+.|+
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELD 213 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEE
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEE
Confidence 4677777777766555555677788888888888777777665 45567788888888876 44554 356667777777
Q ss_pred eCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCcc
Q 035893 591 IGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASL 668 (755)
Q Consensus 591 ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 668 (755)
+++| +..+. ..+..+++|++|++++|.+....+ ..+.++++|++|++++| .+..++... +..+++|
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L 281 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER----NAFDNLQSLVEINLAHN--NLTLLPHDL------FTPLHHL 281 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT----TSSTTCTTCCEEECTTS--CCCCCCTTT------TSSCTTC
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEECh----hhhcCCCCCCEEECCCC--CCCccChhH------hccccCC
Confidence 7766 22221 345556666666666666555443 44566666666666653 333333221 2345566
Q ss_pred ceEecccC
Q 035893 669 TSLTIFSF 676 (755)
Q Consensus 669 ~~L~l~~~ 676 (755)
+.|+++++
T Consensus 282 ~~L~L~~N 289 (440)
T 3zyj_A 282 ERIHLHHN 289 (440)
T ss_dssp CEEECCSS
T ss_pred CEEEcCCC
Confidence 66666554
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=7.9e-17 Score=175.25 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=74.1
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC--CccCCCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
+++++|++++|......+..+..+++|+.|++++|. +..++ .+..+++|++|++++|. +..++...+ ..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCCCE
Confidence 578888888887666666778888888888888884 44443 24457888888888887 445554433 67788888
Q ss_pred EEeccCCccccccccc--CCCCCcEEeeeCCcCCCCCc
Q 035893 423 LIILYCNSLTYIAEVQ--LPPSLKQLDIYNCDNIRTLT 458 (755)
Q Consensus 423 L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~L~~l~ 458 (755)
|++++ +.++.++... ..++|++|++++|..++.++
T Consensus 152 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 152 LWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp EECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred EECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 88887 4566665432 24556666666665555443
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=7.8e-17 Score=163.81 Aligned_cols=178 Identities=24% Similarity=0.267 Sum_probs=131.8
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCcc-CCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSF-PEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
++|++|++++|...+..+..+..+++|++|++++|..++.+ +..+..+++|++|++++|......+..+.++++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 47888888888666655777888888888888888656665 55667788888888888886665566778888888888
Q ss_pred eCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCcc
Q 035893 591 IGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASL 668 (755)
Q Consensus 591 ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 668 (755)
++++ +..+. ..+..+++|++|++++|.+..... ..+..+++|++|++++| .+..+.. ..+..+++|
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~------~~~~~l~~L 203 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQN--RVAHVHP------HAFRDLGRL 203 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS--CCCEECT------TTTTTCTTC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCCC--cccccCH------hHccCcccc
Confidence 8877 44433 336677888889988887765443 45778889999999884 2333321 223567889
Q ss_pred ceEecccCCCCccccc-cccCCCCccEEeeCCCCC
Q 035893 669 TSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPK 702 (755)
Q Consensus 669 ~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 702 (755)
++|+++++ .++.++. .+..+++|++|++++|+-
T Consensus 204 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 204 MTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 99999985 6666665 688899999999999954
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.1e-17 Score=180.77 Aligned_cols=244 Identities=14% Similarity=0.146 Sum_probs=167.2
Q ss_pred HHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhcc
Q 035893 336 QQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCH 415 (755)
Q Consensus 336 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 415 (755)
.+......+++|++|++++|...+..|..++.+++|++|++++|.. ...+++..+++|++|++++|. +..++
T Consensus 25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~-l~~l~------ 96 (487)
T 3oja_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNY-VQELL------ 96 (487)
T ss_dssp HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EEEEECTTCTTCCEEECCSSE-EEEEE------
T ss_pred HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CCCcccccCCCCCEEEecCCc-CCCCC------
Confidence 3444444557999999999987776677899999999999999964 444447789999999999997 44433
Q ss_pred CCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccC
Q 035893 416 TNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSK 495 (755)
Q Consensus 416 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~ 495 (755)
..++|++|++++ +.++.++... +++|+.|+++++. ++.+...
T Consensus 97 ~~~~L~~L~L~~-N~l~~~~~~~-l~~L~~L~L~~N~-l~~~~~~----------------------------------- 138 (487)
T 3oja_A 97 VGPSIETLHAAN-NNISRVSCSR-GQGKKNIYLANNK-ITMLRDL----------------------------------- 138 (487)
T ss_dssp ECTTCCEEECCS-SCCCCEEECC-CSSCEEEECCSSC-CCSGGGB-----------------------------------
T ss_pred CCCCcCEEECcC-CcCCCCCccc-cCCCCEEECCCCC-CCCCCch-----------------------------------
Confidence 337899999988 4666665543 3457777776654 2221100
Q ss_pred CCcchhhhhhhccCCCCCcceEEEccCccchhhhhhcC-CCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcc
Q 035893 496 NELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLD-NNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLK 574 (755)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 574 (755)
.++.+ ++|+.|++++|...+..|..+. .+++|+.|++++| .+..++. ...+++|+.|++++|.. .
T Consensus 139 ----------~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~Ls~N~l-~ 204 (487)
T 3oja_A 139 ----------DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSNKL-A 204 (487)
T ss_dssp ----------CGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSSCC-C
T ss_pred ----------hhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCEEECCCCCC-C
Confidence 01222 5788888888877776666665 6888888888888 4555544 33478888888888874 4
Q ss_pred cccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEe
Q 035893 575 ALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIR 642 (755)
Q Consensus 575 ~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 642 (755)
.+|..+..+++|+.|++++| +..++..+..+++|+.|++++|+......+ ..+..++.|+.++++
T Consensus 205 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHHHHHH
T ss_pred CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcEEecc
Confidence 45556778888888888877 444444566667788888888776632222 335566666666664
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2e-16 Score=159.93 Aligned_cols=201 Identities=21% Similarity=0.220 Sum_probs=154.8
Q ss_pred CCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcce
Q 035893 510 LPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQY 588 (755)
Q Consensus 510 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 588 (755)
+|++|++|++++|......+..+..+++|++|++++| .+..++. .+..+++|++|++++|......+..+.++++|++
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 4568999999999776666667889999999999999 5555544 6777999999999999866666677899999999
Q ss_pred eEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCC
Q 035893 589 LTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPA 666 (755)
Q Consensus 589 L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (755)
|+++++ +..+. ..+..+++|++|++++|.+..... +..+..+++|++|++++| .++.++... +..++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l---~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~ 173 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL---PEYFSNLTNLEHLDLSSN--KIQSIYCTD------LRVLH 173 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC---CGGGGGCTTCCEEECCSS--CCCEECGGG------GHHHH
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecC---chhhccCCCCCEEECCCC--CCCcCCHHH------hhhhh
Confidence 999987 44444 357788999999999998766331 146788999999999984 344443221 12344
Q ss_pred ccc----eEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCc
Q 035893 667 SLT----SLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCP 724 (755)
Q Consensus 667 ~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 724 (755)
+|+ +|++++ +.++.++.......+|++|++++| .++.+|...+ +++|++|++++||
T Consensus 174 ~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 174 QMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 454 889998 577888776666779999999999 6888887654 7899999999654
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.7e-17 Score=169.32 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=33.6
Q ss_pred CCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCc
Q 035893 664 LPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCP 724 (755)
Q Consensus 664 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 724 (755)
.+++|++|+++++ .++.+|..+. ++|++|++++| +++.+|...-+++|++|++++|+
T Consensus 251 ~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 3456666666663 4556665444 66666666666 55555553335666666666665
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.5e-15 Score=151.15 Aligned_cols=177 Identities=23% Similarity=0.234 Sum_probs=91.4
Q ss_pred CCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCC-CCCCCCceeEEeccCcCcccccccCCCCCCccee
Q 035893 511 PPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEG-GLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYL 589 (755)
Q Consensus 511 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 589 (755)
|+++++|++++|......+..+..+++|++|++++| .++.++.. +..+++|++|++++|......+..+..+++|++|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 356666666666554444445666666666666666 34444443 2446666666666666433333344566666666
Q ss_pred EeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCc
Q 035893 590 TIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPAS 667 (755)
Q Consensus 590 ~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (755)
+++++ +..+. ..+..+++|++|++++|.+..... ..+..+++|++|++++| .+..++.. .+..+++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~------~~~~l~~ 182 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYNN--QLKRVPEG------AFDKLTE 182 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCSCCCTT------TTTTCTT
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecCC--cCcEeChh------HhccCCC
Confidence 66655 22222 234455566666666665544322 33455556666666552 23333321 1234455
Q ss_pred cceEecccCCCCccccc-cccCCCCccEEeeCCCC
Q 035893 668 LTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 668 L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 701 (755)
|++|+++++ .++.+|. .+..+++|+.|++++|+
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 555555553 4444444 34455555555555553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.4e-15 Score=152.57 Aligned_cols=176 Identities=19% Similarity=0.134 Sum_probs=135.4
Q ss_pred CCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCccee
Q 035893 510 LPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYL 589 (755)
Q Consensus 510 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 589 (755)
+|++++.|++++|......+..+..+++|+.|++++| .++.++.. ..+++|++|++++|. +..+|..+..+++|++|
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVL 105 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEE
Confidence 4478999999999877777778889999999999998 56666654 668899999999987 55777788888999999
Q ss_pred EeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCc
Q 035893 590 TIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPAS 667 (755)
Q Consensus 590 ~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (755)
+++++ +..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++... +..+++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~l~~~~------~~~l~~ 173 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLANN--NLTELPAGL------LNGLEN 173 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTTS--CCSCCCTTT------TTTCTT
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----hhcccccCCCEEECCCC--cCCccCHHH------hcCcCC
Confidence 99887 44444 456777888888888888776544 45778888888888873 455555422 346788
Q ss_pred cceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 668 LTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 668 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
|++|++++ +.++.+|..+...++|+.+++++|+
T Consensus 174 L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 174 LDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 88888888 4777888877778888888888875
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.2e-15 Score=154.69 Aligned_cols=195 Identities=18% Similarity=0.189 Sum_probs=157.4
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
+++++++++++.. +.+|..+ .++++.|++++|......+..+..+++|++|++++|.. ..++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l-~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCC-SSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCC-CcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEEC
Confidence 5899999998754 4566544 47899999999954444456678899999999999984 455443 78999999999
Q ss_pred CCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 592 GGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 592 s~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
+++ +..++..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++.. .+..+++|+.
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N--~l~~~~~~------~~~~l~~L~~ 152 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGN--ELKTLPPG------LLTPTPKLEK 152 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTS--CCCCCCTT------TTTTCTTCCE
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCC--CCCccChh------hcccccCCCE
Confidence 988 55555667788999999999999887654 56899999999999984 45555543 2457899999
Q ss_pred EecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCCCC-cccccceeecCCcc
Q 035893 671 LTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEKGL-PSSLLRLNIAGCPL 725 (755)
Q Consensus 671 L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c~~ 725 (755)
|++++ +.++.+|. .+..+++|++|++++| .++.+|...+ ..+|+.|++++||.
T Consensus 153 L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCC-CcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 99999 57888887 5578999999999999 7889988655 67899999999875
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.9e-16 Score=173.13 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=44.8
Q ss_pred CCCCccEEEEccCCCcccCC--CccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCc
Q 035893 367 SLSSLREIEICKCSSLVSFP--EVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLK 444 (755)
Q Consensus 367 ~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~ 444 (755)
.+++|+.|++++|. +..++ .+..+++|++|++++|......+ + ..+++|++|++++| .++.++.. ++|+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N-~l~~l~~~---~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNN-YVQELLVG---PSIE 102 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSS-EEEEEEEC---TTCC
T ss_pred cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCC-cCCCCCCC---CCcC
Confidence 34578888888874 44443 24557788888888777443333 2 66777777777773 45554422 3344
Q ss_pred EEeeeC
Q 035893 445 QLDIYN 450 (755)
Q Consensus 445 ~L~l~~ 450 (755)
.|++++
T Consensus 103 ~L~L~~ 108 (487)
T 3oja_A 103 TLHAAN 108 (487)
T ss_dssp EEECCS
T ss_pred EEECcC
Confidence 444444
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=5.5e-16 Score=159.53 Aligned_cols=173 Identities=23% Similarity=0.181 Sum_probs=114.3
Q ss_pred CCcceEEEccCccchhhhhhcCCC-----CCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccc--ccccC--CC
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNN-----TSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKA--LPKGL--HN 582 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~l--~~ 582 (755)
++|++|++++|...+. |..+..+ ++|++|++++|......+..+..+++|++|++++|...+. ++..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 5788888888866554 5444444 7888888888744333346677788888888888875543 22233 77
Q ss_pred CCCcceeEeCCc-CCCCc----cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccc
Q 035893 583 LSTLQYLTIGGA-LPSLE----EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKR 657 (755)
Q Consensus 583 l~~L~~L~ls~~-~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 657 (755)
+++|++|++++| +..+. ..+..+++|++|++++|.+....+. ..+..+++|++|++++| .++.+|...
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N--~l~~ip~~~-- 272 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFT--GLKQVPKGL-- 272 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC---SCCCCCTTCCEEECTTS--CCSSCCSSC--
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch---hhhhhcCCCCEEECCCC--ccChhhhhc--
Confidence 788888888877 22221 2234567888888888877664421 23556778888888874 344565433
Q ss_pred cCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 658 LGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 658 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
.++|++|++++ +.++.+|. +..+++|++|++++|+
T Consensus 273 -------~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 -------PAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -------CSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred -------cCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 27788888887 46777765 7778888888888883
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=3.4e-15 Score=147.23 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=15.9
Q ss_pred CccceEecccCCCCccccccccCCCCccEEeeCCCC
Q 035893 666 ASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 666 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 701 (755)
++|++|++++ +.++.+|.. .+++|+.|+++++.
T Consensus 205 ~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 205 SGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp BCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC-
T ss_pred cCCcEEECCC-CccccCChh--HhccCceeeccCcc
Confidence 3344444444 344444433 45666666666554
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=7e-15 Score=148.51 Aligned_cols=177 Identities=16% Similarity=0.087 Sum_probs=125.7
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
++|++|++++|...+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 47788888887665555556777888888888887433333455667888888888888755544446778888888888
Q ss_pred CCc-CCC--CccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCcc----EEEEeccCCCcccccccccccCCCCCC
Q 035893 592 GGA-LPS--LEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLR----ELIIRGCDDDMVSFPLEDKRLGTALPL 664 (755)
Q Consensus 592 s~~-~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (755)
+++ +.. ++..+..+++|++|++++|.+....+ ..+..+++|+ +|++++| .+..++... ..
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~-------~~ 198 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLN--PMNFIQPGA-------FK 198 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEEEECCSS--CCCEECTTS-------SC
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccceeeecCCC--cccccCccc-------cC
Confidence 877 333 23456667888888888888776544 3345555555 8899884 455555433 23
Q ss_pred CCccceEecccCCCCccccc-cccCCCCccEEeeCCCCC
Q 035893 665 PASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPK 702 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 702 (755)
..+|++|+++++ .++.+|. .+..+++|++|++++|+-
T Consensus 199 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 199 EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 458999999995 6888877 568899999999999953
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=1e-14 Score=146.62 Aligned_cols=195 Identities=22% Similarity=0.237 Sum_probs=153.4
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
+.+.++++++.. +.+|..+ .+++++|++++| .+..++. .+..+++|++|++++|......+..+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKL-TAIPSNI--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCC-SSCCSCC--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCC-CccCCCC--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 567888887754 4566544 368999999999 4566654 6778999999999999854433345688999999999
Q ss_pred CCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccc
Q 035893 592 GGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLT 669 (755)
Q Consensus 592 s~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 669 (755)
+++ +..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++.. .+..+++|+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n--~l~~~~~~------~~~~l~~L~ 160 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSLGYN--ELQSLPKG------VFDKLTSLK 160 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTT------TTTTCTTCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEECCCC--cCCccCHh------HccCCcccc
Confidence 988 44444 456778999999999999877655 56889999999999984 45555543 245789999
Q ss_pred eEecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCcc
Q 035893 670 SLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCPL 725 (755)
Q Consensus 670 ~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 725 (755)
+|+++++ .++.++. .+..+++|++|++++| .++.+++..+ +++|+.|++++||.
T Consensus 161 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999995 7777776 5888999999999999 7888888655 78999999999873
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=154.66 Aligned_cols=202 Identities=14% Similarity=0.081 Sum_probs=151.0
Q ss_pred CCcceEEEccCccchhhhhhc--CCCCCcCeEEEecCCCCCccC----CCCCCCCCceeEEeccCcCcccccccCCCCCC
Q 035893 512 PSLKSLRVNFCSKLELIAERL--DNNTSLETISISNCENLVSFP----EGGLPCAKLRTLKIYDCKRLKALPKGLHNLST 585 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~ 585 (755)
++|++|++++|...+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 469999999998888877776 889999999999996544333 22345889999999999976666678889999
Q ss_pred cceeEeCCcCCCC-----c--cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccc-cccccc
Q 035893 586 LQYLTIGGALPSL-----E--EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSF-PLEDKR 657 (755)
Q Consensus 586 L~~L~ls~~~~~l-----~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~ 657 (755)
|++|++++| .-. . .....+++|++|++++|.+....... ...+..+++|++|++++| .+..+ |....
T Consensus 171 L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~- 245 (310)
T 4glp_A 171 LTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAGVQPHSLDLSHN--SLRATVNPSAP- 245 (310)
T ss_dssp CCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHTCCCSSEECTTS--CCCCCCCSCCS-
T ss_pred CCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcCCCCCEEECCCC--CCCccchhhHH-
Confidence 999999998 321 1 22357889999999999886433211 012467899999999984 33333 43321
Q ss_pred cCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecCCcc
Q 035893 658 LGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPL 725 (755)
Q Consensus 658 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 725 (755)
....+++|++|++++ +.++.+|..+. ++|++|++++| .++.+|....+++|+.|++++|+.
T Consensus 246 ---~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 246 ---RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ---SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred ---hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 111247999999999 47888988664 89999999999 678877644578999999999873
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=5.9e-15 Score=151.27 Aligned_cols=171 Identities=18% Similarity=0.185 Sum_probs=112.8
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
++|++|++++|.... ++. +..+++|+.|++++|. ++.++ .+..+++|++|++++|.. ..++. +..+++|+.|++
T Consensus 63 ~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEEC
Confidence 578888888775444 333 7777888888888873 55554 456677888888888773 44433 677778888888
Q ss_pred CCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 592 GGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 592 s~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
++| +..+ ..+..+++|++|++++|.+....+ +..+++|++|++++| .+..++. +..+++|++
T Consensus 137 ~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n--~l~~~~~--------l~~l~~L~~ 199 (308)
T 1h6u_A 137 DLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDN--KISDISP--------LASLPNLIE 199 (308)
T ss_dssp CSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSS--CCCCCGG--------GGGCTTCCE
T ss_pred CCCccCcC-ccccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCC--ccCcChh--------hcCCCCCCE
Confidence 777 2222 225566778888888877655322 567777888888773 3333332 135777888
Q ss_pred EecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 671 LTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 671 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
|++++| .+..++ .+..+++|++|++++| .+...|.
T Consensus 200 L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 200 VHLKNN-QISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp EECTTS-CCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred EEccCC-ccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 888774 666666 3677788888888877 4555544
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=3.4e-14 Score=148.65 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=44.0
Q ss_pred EEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--ccCCCCccEEEeccCCCCcccchhhhccCCCCccEEEec
Q 035893 349 YLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIIL 426 (755)
Q Consensus 349 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 426 (755)
+++-+++. ++.+|..+ .+++++|++++| .++.++. +..+++|++|++++|+..+.++...+ .+++++.++...
T Consensus 13 ~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESK-VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTT-CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEE
T ss_pred EEEecCCC-CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcc
Confidence 34444432 44555443 245666666666 3455553 33466666666666665555554433 455665555544
Q ss_pred cCCcccccc
Q 035893 427 YCNSLTYIA 435 (755)
Q Consensus 427 ~c~~l~~~~ 435 (755)
++++++.++
T Consensus 88 ~~N~l~~l~ 96 (350)
T 4ay9_X 88 KANNLLYIN 96 (350)
T ss_dssp EETTCCEEC
T ss_pred cCCcccccC
Confidence 445555544
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.4e-14 Score=145.74 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=69.4
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
++|++|++++|...+..+..+..+++|+.|++++|. ++.++. .+..+++|++|++++|......+..+..+++|+.|+
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 467777777775554445556677788888888773 444443 345677888888888775555555567777888888
Q ss_pred eCCcCCCCccCCCCCCceeeEeecCCcccchhh
Q 035893 591 IGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSM 623 (755)
Q Consensus 591 ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 623 (755)
+++| + ..+.+++|+.+++..|......+
T Consensus 212 l~~N-~----~~~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 212 LHDN-P----WDCTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCSS-C----BCCCTTTTHHHHHHHHHTGGGBB
T ss_pred ccCC-C----ccccCcHHHHHHHHHHhCCCccc
Confidence 8777 2 22445677777777776655444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=5.8e-14 Score=144.25 Aligned_cols=83 Identities=17% Similarity=0.043 Sum_probs=62.3
Q ss_pred ccccEEEEecCCCCcccCccc--cCCCCccEEEEccCCCcccCCC-----ccCCCCccEEEeccCCCCcccchhhhccCC
Q 035893 345 CRLEYLKLSNCEGLVKLPQSS--LSLSSLREIEICKCSSLVSFPE-----VALPSKLKKIQISYCDALKSLPEAWMCHTN 417 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 417 (755)
++|++|++++|...+..|..+ ..+++|++|++++|......+. ...+++|++|++++|......+..+ ..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccC
Confidence 679999999998877888777 8899999999999965543332 2347889999999888544444443 677
Q ss_pred CCccEEEeccCC
Q 035893 418 SSLEILIILYCN 429 (755)
Q Consensus 418 ~~L~~L~l~~c~ 429 (755)
++|++|++++|.
T Consensus 169 ~~L~~L~Ls~N~ 180 (310)
T 4glp_A 169 PALTSLDLSDNP 180 (310)
T ss_dssp TTCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 888888888753
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=3e-14 Score=143.33 Aligned_cols=126 Identities=20% Similarity=0.116 Sum_probs=58.7
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
+|++|++++|...+..+..+..+++|++|++++|. +..++. .+..+++|++|++++|......+..+..+++|+.|++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 45555555554443333344555555555555553 333332 2344555555555555433222233445555555555
Q ss_pred CCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 592 GGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 592 s~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
++| +..+. ..+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCEEEccC
Confidence 554 22222 123344455555555554443222 2344555555555554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=3.3e-15 Score=155.83 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=147.1
Q ss_pred CCcceEEEccCccchh-hhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcc--cccccCCCCCCcce
Q 035893 512 PSLKSLRVNFCSKLEL-IAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLK--ALPKGLHNLSTLQY 588 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~ 588 (755)
++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..++ .++..+.++++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 6899999999986655 77788899999999999996444556566678999999999995455 35666788999999
Q ss_pred eEeCCcCCCCc-----cCCCCCC-ceeeEeecCCc--ccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCC
Q 035893 589 LTIGGALPSLE-----EEDGLPT-NLHFLKIEGNM--EIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGT 660 (755)
Q Consensus 589 L~ls~~~~~l~-----~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (755)
|++++| +.+. .....++ +|++|++++|. +...... ..+..+++|++|++++|.......+..
T Consensus 173 L~l~~~-~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~------ 242 (336)
T 2ast_B 173 LNLSWC-FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSVMLKNDCFQE------ 242 (336)
T ss_dssp EECCCC-TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCTTCCGGGGGG------
T ss_pred EcCCCC-CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCCCcCCHHHHHH------
Confidence 999998 5554 3345677 99999999995 3322221 346789999999999953111222222
Q ss_pred CCCCCCccceEecccCCCCccc-cccccCCCCccEEeeCCCCCCCCCCCCCC---cccccceeecCCcchhHhhc
Q 035893 661 ALPLPASLTSLTIFSFPSLERL-SSSIVDLQNLTQLDLGDCPKLKYFPEKGL---PSSLLRLNIAGCPLIEEKCR 731 (755)
Q Consensus 661 ~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~~~ 731 (755)
+..+++|++|++++|..+..- ...+..+++|++|++++| +++.++ ...++.|++++| .++....
T Consensus 243 -l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~~~ 310 (336)
T 2ast_B 243 -FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTIAR 310 (336)
T ss_dssp -GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCTTC
T ss_pred -HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCccccC
Confidence 246799999999998643321 125788999999999999 555444 356899998654 4444333
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=3.9e-14 Score=140.68 Aligned_cols=173 Identities=18% Similarity=0.139 Sum_probs=104.2
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
+.+.++++++. ++.+|..+. ++++.|++++|......+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 56677777664 344554432 577777887774433334456667777777777777555555556777777777777
Q ss_pred Cc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 593 GA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 593 ~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
++ +..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++.. .+..+++|++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~------~~~~l~~L~~ 159 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTN--QLQSIPAG------AFDKLTNLQT 159 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTT------TTTTCTTCCE
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCC--cCCccCHH------HcCcCcCCCE
Confidence 66 33333 344566677777777776654333 34566677777777663 33344331 1235566666
Q ss_pred EecccCCCCccccc-cccCCCCccEEeeCCCC
Q 035893 671 LTIFSFPSLERLSS-SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 671 L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 701 (755)
|+++++ .++.++. .+..+++|++|++++|+
T Consensus 160 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 160 LSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 666663 5555544 55666666666666663
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=6e-14 Score=143.75 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=36.3
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
++|++|++++|.. ..++ .+..+++|++|++++| .+..++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVSA-I--AGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCGG-G--TTCTTCCEEE
T ss_pred CCcCEEEeeCCCc-cCch-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCchh-h--cCCCCCCEEE
Confidence 4555555555532 2333 3455555555555555 23333334445555555555554 222321 1 3445555555
Q ss_pred ecc
Q 035893 425 ILY 427 (755)
Q Consensus 425 l~~ 427 (755)
+++
T Consensus 114 l~~ 116 (308)
T 1h6u_A 114 LTS 116 (308)
T ss_dssp CTT
T ss_pred CCC
Confidence 544
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=9e-14 Score=145.41 Aligned_cols=195 Identities=18% Similarity=0.144 Sum_probs=111.9
Q ss_pred CCcceEEEccCccchhhhh-hcCCCCCcCeEEEecCCCCCccC-CCCCCCCCceeEEeccCcCcccccccCCCCCCccee
Q 035893 512 PSLKSLRVNFCSKLELIAE-RLDNNTSLETISISNCENLVSFP-EGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYL 589 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 589 (755)
++|++|++++|...+.++. .+.++++++++.+.++..+..++ ..+..+++|++|++++|......+..+.....+..+
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 4667777776665555443 35566666654444433555553 334556677777777666433333334445556666
Q ss_pred EeCCcCCCCc----cC-CCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCC
Q 035893 590 TIGGALPSLE----EE-DGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPL 664 (755)
Q Consensus 590 ~ls~~~~~l~----~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (755)
++.++ ..+. .. .+....++.|++++|.+..... ......+|++|++++ ++.++.+|.+. +..
T Consensus 134 ~l~~~-~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f~~~~L~~l~l~~-~n~l~~i~~~~------f~~ 200 (350)
T 4ay9_X 134 DIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLDELNLSD-NNNLEELPNDV------FHG 200 (350)
T ss_dssp EEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSSTTEEEEEEECTT-CTTCCCCCTTT------TTT
T ss_pred hhccc-cccccccccchhhcchhhhhhccccccccCCCh-----hhccccchhHHhhcc-CCcccCCCHHH------hcc
Confidence 66554 2222 11 2223456777777776654332 223445677777765 35566666432 356
Q ss_pred CCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccceeecC
Q 035893 665 PASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRLNIAG 722 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 722 (755)
+++|++|++++ +.++.+|.. .+.+|++|.+.+|..++.+|...-+++|+.+++.+
T Consensus 201 l~~L~~LdLs~-N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISR-TRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTT-SCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CcccchhhcCC-CCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 77777777777 367777652 35677777777777777777644466777777654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=3.5e-15 Score=155.67 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=50.0
Q ss_pred cccEEEEecCCCCcccCccccCC--CCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcc-cchhhhccCCCCccE
Q 035893 346 RLEYLKLSNCEGLVKLPQSSLSL--SSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKS-LPEAWMCHTNSSLEI 422 (755)
Q Consensus 346 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~ 422 (755)
.++.++++++... +..+..+ ++++.|++++|......+....+++|++|++++|..... ++..+ ..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCE
Confidence 3566666655432 2233444 566666666664333334444466666666666653222 33322 55666666
Q ss_pred EEeccCCcccc-ccc-ccCCCCCcEEeeeCCc
Q 035893 423 LIILYCNSLTY-IAE-VQLPPSLKQLDIYNCD 452 (755)
Q Consensus 423 L~l~~c~~l~~-~~~-~~~~~~L~~L~l~~~~ 452 (755)
|++++|. +++ .+. ....++|++|++++|.
T Consensus 123 L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 123 LSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp EECTTCB-CCHHHHHHHTTCTTCSEEECTTCB
T ss_pred EeCcCcc-cCHHHHHHHhcCCCCCEEECCCCC
Confidence 6666642 332 111 1223445555555554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=2.4e-13 Score=134.96 Aligned_cols=128 Identities=17% Similarity=0.108 Sum_probs=57.3
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
++++.|++++|...+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 44555555555444444444445555555555554222222223344455555555555433333333445555555555
Q ss_pred CCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 592 GGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 592 s~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+++ +..++ ..+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA----GAFDKLTNLQTLSLST 164 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCH----HHcCcCcCCCEEECCC
Confidence 544 22222 123444555555555554443222 2344455555555554
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=9.3e-15 Score=153.80 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=23.6
Q ss_pred EEecCCCCcccCccccCCCCccEEEEccCCCcccCCC------ccCCC-CccEEEeccCC
Q 035893 351 KLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE------VALPS-KLKKIQISYCD 403 (755)
Q Consensus 351 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~------~~~l~-~L~~L~l~~~~ 403 (755)
+++.+...+.+|..+...++|++|++++|. ++..+. +..++ +|++|++++|.
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence 344444444444434444445555555553 333321 12234 55555555554
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=1.7e-14 Score=153.39 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=50.5
Q ss_pred cccccEEEEecCCCCcc----cCccccCCCCccEEEEccCCC--cc-cCCC--------ccCCCCccEEEeccCCCCcc-
Q 035893 344 SCRLEYLKLSNCEGLVK----LPQSSLSLSSLREIEICKCSS--LV-SFPE--------VALPSKLKKIQISYCDALKS- 407 (755)
Q Consensus 344 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~--l~-~~~~--------~~~l~~L~~L~l~~~~~~~~- 407 (755)
+++|++|++++|..... ++..+..+++|++|++++|.. +. .+|. +..+++|++|++++|.....
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 36777777777755443 223466777888888877631 11 1221 13567788888888774442
Q ss_pred ---cchhhhccCCCCccEEEeccC
Q 035893 408 ---LPEAWMCHTNSSLEILIILYC 428 (755)
Q Consensus 408 ---~~~~~~~~~~~~L~~L~l~~c 428 (755)
++..+ ..+++|++|++++|
T Consensus 111 ~~~l~~~l--~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 111 QEPLIDFL--SKHTPLEHLYLHNN 132 (386)
T ss_dssp HHHHHHHH--HHCTTCCEEECCSS
T ss_pred HHHHHHHH--HhCCCCCEEECcCC
Confidence 33333 56777888887774
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=7.9e-15 Score=154.35 Aligned_cols=201 Identities=15% Similarity=0.088 Sum_probs=93.9
Q ss_pred CcceEEEccCccchhhhhhcCCC-----CCcCeEEEecCCCCCccC-CC----CCCC-CCceeEEeccCcCccccccc--
Q 035893 513 SLKSLRVNFCSKLELIAERLDNN-----TSLETISISNCENLVSFP-EG----GLPC-AKLRTLKIYDCKRLKALPKG-- 579 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~~~-~~----~~~l-~~L~~L~l~~~~~l~~~~~~-- 579 (755)
+|++|++++|......+..+..+ ++|++|++++|. ++..+ .. +..+ ++|++|++++|......+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 66666666665544433333332 666666666663 32221 11 2222 56666666666643322221
Q ss_pred --CCC-CCCcceeEeCCc-CCCCc-----cCC-CCCCceeeEeecCCcccchhhhhcCcCcCCC-CCccEEEEeccCCCc
Q 035893 580 --LHN-LSTLQYLTIGGA-LPSLE-----EED-GLPTNLHFLKIEGNMEIWKSMIERGRGFHRF-SSLRELIIRGCDDDM 648 (755)
Q Consensus 580 --l~~-l~~L~~L~ls~~-~~~l~-----~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 648 (755)
+.. .++|++|++++| +.... ... ...++|++|++++|.+....+..+...+..+ ++|++|++++|. +
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i 208 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL--L 208 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC--G
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC--C
Confidence 223 246666666665 11100 111 1223666666666665544432222233444 366666666632 2
Q ss_pred cc-----ccccccccCCCCCCCCccceEecccCCCCcccc-----ccccCCCCccEEeeCCCCCCCCCCCC-------C-
Q 035893 649 VS-----FPLEDKRLGTALPLPASLTSLTIFSFPSLERLS-----SSIVDLQNLTQLDLGDCPKLKYFPEK-------G- 710 (755)
Q Consensus 649 ~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~~~~~~~~L~~L~l~~c~~l~~l~~~-------~- 710 (755)
.. ++.... ...++|++|++++| .++..+ ..+..+++|++|++++| .+..+++. .
T Consensus 209 ~~~~~~~l~~~l~------~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 209 GLKSYAELAYIFS------SIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAF 280 (362)
T ss_dssp GGSCHHHHHHHHH------HSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHh------cCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHh
Confidence 22 221110 11346666666664 443332 23355566666666666 32222221 1
Q ss_pred -CcccccceeecCCc
Q 035893 711 -LPSSLLRLNIAGCP 724 (755)
Q Consensus 711 -~~~~L~~L~i~~c~ 724 (755)
-+++|+.|++++|+
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 14556666666665
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=7.9e-13 Score=134.13 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=128.4
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
++|+.|++++|... .++. +..+++|++|++++| .+..++. +..+++|++|++++|. +..++ .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~-~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcc-cChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 47888888888543 3343 777889999999988 5555655 7778899999999887 44454 4788889999999
Q ss_pred CCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 592 GGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 592 s~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
++| +..+ ..+..+++|++|++++|.+... ..+..+++|++|++++| .+..++. +..+++|++
T Consensus 120 ~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N--~l~~~~~--------l~~l~~L~~ 182 (291)
T 1h6t_A 120 EHNGISDI-NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN--QISDIVP--------LAGLTKLQN 182 (291)
T ss_dssp TTSCCCCC-GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS--CCCCCGG--------GTTCTTCCE
T ss_pred CCCcCCCC-hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCC--ccccchh--------hcCCCccCE
Confidence 887 3333 4456678899999999987664 24678999999999984 3444433 247889999
Q ss_pred EecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 671 LTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 671 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
|+++++ .++.++ .+..+++|+.|++++| .+...|.
T Consensus 183 L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 183 LYLSKN-HISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp EECCSS-CCCBCG-GGTTCTTCSEEEEEEE-EEECCCE
T ss_pred EECCCC-cCCCCh-hhccCCCCCEEECcCC-cccCCcc
Confidence 999994 788887 4889999999999999 4555544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=1.1e-12 Score=133.05 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=137.4
Q ss_pred CCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeE
Q 035893 533 DNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFL 611 (755)
Q Consensus 533 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L 611 (755)
..+++|+.|++++| .+..++ .+..+++|++|++++|.. ..++. +..+++|+.|++++| +..+ ..+..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEE
T ss_pred hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcCCCC-hhhccCCCCCEE
Confidence 35788999999998 666675 467799999999999985 44544 899999999999998 3332 457888999999
Q ss_pred eecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCC
Q 035893 612 KIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQN 691 (755)
Q Consensus 612 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 691 (755)
++++|.+... ..+..+++|++|++++| .+..++. +..+++|++|++++| .++.+++ +..+++
T Consensus 118 ~L~~n~i~~~------~~l~~l~~L~~L~l~~n--~l~~~~~--------l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDI------NGLVHLPQLESLYLGNN--KITDITV--------LSRLTKLDTLSLEDN-QISDIVP-LAGLTK 179 (291)
T ss_dssp ECTTSCCCCC------GGGGGCTTCCEEECCSS--CCCCCGG--------GGGCTTCSEEECCSS-CCCCCGG-GTTCTT
T ss_pred ECCCCcCCCC------hhhcCCCCCCEEEccCC--cCCcchh--------hccCCCCCEEEccCC-ccccchh-hcCCCc
Confidence 9999988764 24788999999999985 3444432 247899999999995 7788875 899999
Q ss_pred ccEEeeCCCCCCCCCCCCCCcccccceeecCCcc
Q 035893 692 LTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGCPL 725 (755)
Q Consensus 692 L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 725 (755)
|++|++++| .++.++...-+++|+.|++++|+.
T Consensus 180 L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 180 LQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred cCEEECCCC-cCCCChhhccCCCCCEEECcCCcc
Confidence 999999999 788887744588999999999863
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=4.9e-12 Score=139.25 Aligned_cols=92 Identities=29% Similarity=0.411 Sum_probs=65.4
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
.+|+.|++++|... .+|..+ +++|+.|++++|. ++.+| ..+++|++|++++|. +..+|. + .. +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNR-LSTLPE-L--PA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC-C--CT--TCCEEE
T ss_pred CCccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCC-CCCcch-h--hc--CCCEEE
Confidence 48899999988754 477655 3789999998884 55777 568889999999887 444665 3 33 788888
Q ss_pred eccCCcccccccccCCCCCcEEeeeCC
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYNC 451 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~~ 451 (755)
+++ +.++.+|. .+++|+.|+++++
T Consensus 127 Ls~-N~l~~lp~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 127 VDN-NQLTMLPE--LPALLEYINADNN 150 (571)
T ss_dssp CCS-SCCSCCCC--CCTTCCEEECCSS
T ss_pred CCC-CcCCCCCC--cCccccEEeCCCC
Confidence 887 46666665 4455666666554
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=1.8e-12 Score=123.25 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=85.5
Q ss_pred CCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCC-CccCCCCCCceee
Q 035893 533 DNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPS-LEEEDGLPTNLHF 610 (755)
Q Consensus 533 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~-l~~~~~~~~~L~~ 610 (755)
..+++|+.|++++| .+..++ .+..+++|++|++++|. ...+ ..+..+++|++|++++| +.. ....+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34678999999998 566777 57778889999998884 4444 35667777777777766 211 1234455566666
Q ss_pred EeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCC
Q 035893 611 LKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQ 690 (755)
Q Consensus 611 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 690 (755)
|++++|.+....+ ..+..+++|++|++++| ..+..++. +..+++|++|++++| .++.++ .+..++
T Consensus 117 L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n-~~i~~~~~--------l~~l~~L~~L~l~~n-~i~~~~-~l~~l~ 181 (197)
T 4ezg_A 117 LDISHSAHDDSIL----TKINTLPKVNSIDLSYN-GAITDIMP--------LKTLPELKSLNIQFD-GVHDYR-GIEDFP 181 (197)
T ss_dssp EECCSSBCBGGGH----HHHTTCSSCCEEECCSC-TBCCCCGG--------GGGCSSCCEEECTTB-CCCCCT-TGGGCS
T ss_pred EEecCCccCcHhH----HHHhhCCCCCEEEccCC-CCccccHh--------hcCCCCCCEEECCCC-CCcChH-HhccCC
Confidence 6666666554333 23455666666666652 11333321 123444555555442 344443 344445
Q ss_pred CccEEeeCCC
Q 035893 691 NLTQLDLGDC 700 (755)
Q Consensus 691 ~L~~L~l~~c 700 (755)
+|++|++++|
T Consensus 182 ~L~~L~l~~N 191 (197)
T 4ezg_A 182 KLNQLYAFSQ 191 (197)
T ss_dssp SCCEEEECBC
T ss_pred CCCEEEeeCc
Confidence 5555555544
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=2.2e-12 Score=122.73 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=78.6
Q ss_pred CCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccE
Q 035893 559 CAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRE 638 (755)
Q Consensus 559 l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 638 (755)
+++|++|++++|. +..+| .+..+++|++|++++|-......+..+++|++|++++|.+....+ ..+..+++|++
T Consensus 43 l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~ 116 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTL 116 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCE
T ss_pred cCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC----hhhcCCCCCCE
Confidence 4556666666665 33444 455666666666666511111344455666666666665554333 34556666666
Q ss_pred EEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCCccEEeeCCCCCCCCCCCCCCcccccce
Q 035893 639 LIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPEKGLPSSLLRL 718 (755)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 718 (755)
|++++|... ...+... ..+++|++|++++|..++.+| .+..+++|++|++++| .++.++...-+++|++|
T Consensus 117 L~Ls~n~i~-~~~~~~l-------~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 117 LDISHSAHD-DSILTKI-------NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQL 186 (197)
T ss_dssp EECCSSBCB-GGGHHHH-------TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEE
T ss_pred EEecCCccC-cHhHHHH-------hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEE
Confidence 666653211 1111111 345666666666654455555 4566666666666666 45555432225566666
Q ss_pred eecCCc
Q 035893 719 NIAGCP 724 (755)
Q Consensus 719 ~i~~c~ 724 (755)
++++++
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 666654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=3.5e-12 Score=140.43 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=99.2
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
++|++|++++|... .+| ..+++|+.|++++| .++.+|. +.. +|++|++++|.. ..+|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l-~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQL-TMLPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCC-SCCCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcC-CCCCC---cCccccEEeC
Confidence 57777777777544 455 34677777777777 4555666 433 777777777764 33655 5677777777
Q ss_pred CCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 592 GGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 592 s~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
++| +..++. .+++|++|++++|.+... + . +. ++|++|++++| .++.+|. .. .......+.|+.
T Consensus 148 s~N~l~~lp~---~l~~L~~L~Ls~N~L~~l-p----~-l~--~~L~~L~Ls~N--~L~~lp~-~~--~~L~~~~~~L~~ 211 (571)
T 3cvr_A 148 DNNQLTMLPE---LPTSLEVLSVRNNQLTFL-P----E-LP--ESLEALDVSTN--LLESLPA-VP--VRNHHSEETEIF 211 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSCC-C----C-CC--TTCCEEECCSS--CCSSCCC-CC----------CCEE
T ss_pred CCCccCcCCC---cCCCcCEEECCCCCCCCc-c----h-hh--CCCCEEECcCC--CCCchhh-HH--HhhhcccccceE
Confidence 776 222222 567777777777776552 1 2 33 67777777773 3445554 20 000011122277
Q ss_pred EecccCCCCccccccccCCCCccEEeeCCCCC
Q 035893 671 LTIFSFPSLERLSSSIVDLQNLTQLDLGDCPK 702 (755)
Q Consensus 671 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 702 (755)
|++++ +.++.+|..+..+++|+.|++++|+.
T Consensus 212 L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 212 FRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 77777 46677777677777777777777743
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=4.1e-14 Score=150.43 Aligned_cols=183 Identities=16% Similarity=0.109 Sum_probs=83.4
Q ss_pred CCcceEEEccCccch----hhhhhcCCCCCcCeEEEecCCCCCc----cCCCCCCC---------CCceeEEeccCcCc-
Q 035893 512 PSLKSLRVNFCSKLE----LIAERLDNNTSLETISISNCENLVS----FPEGGLPC---------AKLRTLKIYDCKRL- 573 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~----~~~~~~~l---------~~L~~L~l~~~~~l- 573 (755)
++|++|++++|.... .++..+..+++|+.|++++|..... ++..+..+ ++|++|++++|...
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 456666666665444 3444555566666666666532111 11111112 55666666666533
Q ss_pred cccc---ccCCCCCCcceeEeCCc-CCC-----Ccc-CCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 574 KALP---KGLHNLSTLQYLTIGGA-LPS-----LEE-EDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 574 ~~~~---~~l~~l~~L~~L~ls~~-~~~-----l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
..++ ..+..+++|++|++++| +.. +.. .+..+++|++|++++|.+.......++..+..+++|++|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 2222 23345556666666655 110 011 3444556666666666554222111223455556666666665
Q ss_pred cCCCcc---cccccccccCCCCCCCCccceEecccCCCCcc-----ccccc-cCCCCccEEeeCCC
Q 035893 644 CDDDMV---SFPLEDKRLGTALPLPASLTSLTIFSFPSLER-----LSSSI-VDLQNLTQLDLGDC 700 (755)
Q Consensus 644 ~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c 700 (755)
|..... .++.... ...+++|++|++++| .++. +|..+ ..+++|++|++++|
T Consensus 254 n~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFS-----KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CCCCHHHHHHHHHHHH-----TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCchhhHHHHHHHHh-----hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 321110 0111100 012555666666654 3333 55444 34566666666666
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=5.8e-12 Score=122.83 Aligned_cols=128 Identities=23% Similarity=0.211 Sum_probs=67.2
Q ss_pred CCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCcc
Q 035893 560 AKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLR 637 (755)
Q Consensus 560 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 637 (755)
++|++|++++|......|..+..+++|+.|+++++ +..++ ..+..+++|++|++++|.+..... ..+..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh----hHhCcchhhC
Confidence 45555555555544333444445555555555544 22222 223444555555555555443322 3355666667
Q ss_pred EEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCCCC
Q 035893 638 ELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 638 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 701 (755)
+|++++| .+..+|... ..+++|++|++++ +.++.++. .+..+++|++|++++|+
T Consensus 116 ~L~Ls~N--~l~~lp~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 116 ELFMCCN--KLTELPRGI-------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSS--CCCSCCTTG-------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEeccCC--cccccCccc-------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 7776663 333444332 3456666666666 35555554 46667777777777774
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=3.7e-12 Score=122.36 Aligned_cols=161 Identities=19% Similarity=0.117 Sum_probs=103.6
Q ss_pred CCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCC-CCCCCCceeEEeccCcCcccccccCCCCCCccee
Q 035893 511 PPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEG-GLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYL 589 (755)
Q Consensus 511 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 589 (755)
+++|++|++++|...+..+..+..+++|++|++++| .++.++.. +..+++|++|++++|......+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 468888888888766555556778888888888888 45555543 4568888888888887544444456778888888
Q ss_pred EeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCc
Q 035893 590 TIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPAS 667 (755)
Q Consensus 590 ~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (755)
+++++ +..+. ..+..+++|++|++++|.+..... ..+..+++|++|++++|. +. ..+++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~-----~~----------~~~~~ 166 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNP-----WD----------CTCPG 166 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCC-----BC----------CCTTT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCCC-----ee----------cCCCC
Confidence 88876 33333 234566777777777776654333 345667777777777631 00 13445
Q ss_pred cceEecccCCCCccccccccCCCC
Q 035893 668 LTSLTIFSFPSLERLSSSIVDLQN 691 (755)
Q Consensus 668 L~~L~l~~~~~l~~l~~~~~~~~~ 691 (755)
|+.|+++.+..-..+|..++.++.
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHHHHhCCceeeccCccccC
Confidence 666666654444455555444443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=4.8e-12 Score=140.97 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=135.5
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
++|+.|++++|... .++ .+..+++|+.|+|++| .+..++. +..+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 58999999998654 444 4788999999999999 5556655 7779999999999998 45554 6889999999999
Q ss_pred CCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 592 GGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 592 s~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
++| +..+ ..+..+++|+.|++++|.+... ..+..+++|+.|+|++| .+..++. +..+++|++
T Consensus 117 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N--~l~~~~~--------l~~l~~L~~ 179 (605)
T 1m9s_A 117 EHNGISDI-NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN--QISDIVP--------LAGLTKLQN 179 (605)
T ss_dssp TTSCCCCC-GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSS--CCCCCGG--------GTTCTTCCE
T ss_pred cCCCCCCC-ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCC--cCCCchh--------hccCCCCCE
Confidence 988 3332 4567789999999999988764 24788999999999984 3333332 247899999
Q ss_pred EecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 671 LTIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 671 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
|++++| .+..++ .+..+++|+.|++++| .+...|.
T Consensus 180 L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 180 LYLSKN-HISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp EECCSS-CCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred EECcCC-CCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 999995 777786 6889999999999999 4555554
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=6.1e-12 Score=140.12 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=109.2
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
++|+.|++++|......+ +..+++|+.|+|++| .+..++ .+..+++|+.|++++|.. ..+ ..+..+++|+.|++
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCC-CCC-GGGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCC-CCC-ccccCCCccCEEEC
Confidence 689999999886655443 778899999999988 555565 577788999999999884 444 45778889999999
Q ss_pred CCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 592 GGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 592 s~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
++| +..+ ..+..+++|+.|++++|.+....+ +..+++|+.|+|++| .+..++. +..+++|+.
T Consensus 139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N--~i~~l~~--------l~~l~~L~~ 201 (605)
T 1m9s_A 139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKN--HISDLRA--------LAGLKNLDV 201 (605)
T ss_dssp CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSS--CCCBCGG--------GTTCTTCSE
T ss_pred CCCccCCc-hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcCC--CCCCChH--------HccCCCCCE
Confidence 888 3333 556678889999999998766433 678889999999884 3444432 246888999
Q ss_pred EecccCCCCcccc
Q 035893 671 LTIFSFPSLERLS 683 (755)
Q Consensus 671 L~l~~~~~l~~l~ 683 (755)
|++++| .+...|
T Consensus 202 L~L~~N-~l~~~p 213 (605)
T 1m9s_A 202 LELFSQ-ECLNKP 213 (605)
T ss_dssp EECCSE-EEECCC
T ss_pred EEccCC-cCcCCc
Confidence 999885 444443
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=3.1e-12 Score=127.54 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=120.2
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
++..++++++... .++ .+..+++|+.|++++| .++.++ .+..+++|++|++++|. +..++. +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECC
Confidence 4555556655433 223 3556788888888887 566666 56667888888888887 444444 7788888888888
Q ss_pred Cc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceE
Q 035893 593 GA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSL 671 (755)
Q Consensus 593 ~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 671 (755)
+| +..++.... ++|++|++++|.+... ..+..+++|++|++++| .+..++. +..+++|++|
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N--~i~~~~~--------l~~l~~L~~L 155 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNN--KLKSIVM--------LGFLSKLEVL 155 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTS--CCCBCGG--------GGGCTTCCEE
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCC------hhhcCcccccEEECCCC--cCCCChH--------HccCCCCCEE
Confidence 77 333333222 8899999999987764 23788999999999984 3445542 2468899999
Q ss_pred ecccCCCCccccccccCCCCccEEeeCCCCCCCCCCC
Q 035893 672 TIFSFPSLERLSSSIVDLQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 672 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 708 (755)
+++++ .++.+ ..+..+++|+.|++++| .+...|.
T Consensus 156 ~L~~N-~i~~~-~~l~~l~~L~~L~l~~N-~~~~~~~ 189 (263)
T 1xeu_A 156 DLHGN-EITNT-GGLTRLKKVNWIDLTGQ-KCVNEPV 189 (263)
T ss_dssp ECTTS-CCCBC-TTSTTCCCCCEEEEEEE-EEECCCE
T ss_pred ECCCC-cCcch-HHhccCCCCCEEeCCCC-cccCCcc
Confidence 99994 67777 57889999999999999 4555554
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1.1e-11 Score=130.12 Aligned_cols=170 Identities=19% Similarity=0.185 Sum_probs=80.5
Q ss_pred ceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCC-CC-CCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 515 KSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEG-GL-PCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 515 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~-~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
+.++.+++. ++.+|..+ .+.++.|++++| .++.++.. +. .+++|+.|++++|......+..+.++++|++|+++
T Consensus 21 ~~l~c~~~~-l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSC-CSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCC-cCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 455555542 33344322 234566666665 34444332 22 45666666666665433333345555555555555
Q ss_pred CcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEe
Q 035893 593 GALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLT 672 (755)
Q Consensus 593 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 672 (755)
++ .+....+ ..+..+++|++|++++| .+..++. ..+..+++|++|+
T Consensus 97 ~N----------------------~l~~~~~----~~~~~l~~L~~L~L~~N--~i~~~~~------~~~~~l~~L~~L~ 142 (361)
T 2xot_A 97 SN----------------------HLHTLDE----FLFSDLQALEVLLLYNN--HIVVVDR------NAFEDMAQLQKLY 142 (361)
T ss_dssp SS----------------------CCCEECT----TTTTTCTTCCEEECCSS--CCCEECT------TTTTTCTTCCEEE
T ss_pred CC----------------------cCCcCCH----HHhCCCcCCCEEECCCC--cccEECH------HHhCCcccCCEEE
Confidence 54 4333222 23444555555555542 2222211 1123445555555
Q ss_pred cccCCCCccccccc----cCCCCccEEeeCCCCCCCCCCCCCC--ccc--ccceeecCCc
Q 035893 673 IFSFPSLERLSSSI----VDLQNLTQLDLGDCPKLKYFPEKGL--PSS--LLRLNIAGCP 724 (755)
Q Consensus 673 l~~~~~l~~l~~~~----~~~~~L~~L~l~~c~~l~~l~~~~~--~~~--L~~L~i~~c~ 724 (755)
+++ +.++.+|..+ ..+++|+.|++++| .++.+|...+ ++. ++.|++.+||
T Consensus 143 L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 143 LSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 555 3555555432 35666666666666 4555554222 222 3566666655
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=2.1e-11 Score=117.93 Aligned_cols=63 Identities=17% Similarity=0.381 Sum_probs=33.8
Q ss_pred cCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCCCC
Q 035893 630 FHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 630 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 701 (755)
+..+++|++|++++| .+..++.. .+..+++|++|++++ +.++.++. .+..+++|++|++++|+
T Consensus 100 f~~l~~L~~L~L~~N--~l~~~~~~------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN--KINCLRVD------AFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTT------TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCC--CCCEeCHH------HcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 455555566665552 22222211 123455555555555 34555554 46667777777777774
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=2.5e-11 Score=116.51 Aligned_cols=154 Identities=17% Similarity=0.081 Sum_probs=97.7
Q ss_pred CCCcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeE
Q 035893 535 NTSLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFL 611 (755)
Q Consensus 535 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L 611 (755)
.++|++|++++| .++.++. .+..+++|++|++++|......+..+..+++|++|+++++ +..++ ..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 567888888888 4455554 3566888888888888754433345677888888888877 33333 234667777777
Q ss_pred eecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccccccCCCC
Q 035893 612 KIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSSSIVDLQN 691 (755)
Q Consensus 612 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 691 (755)
++++|.+....+ ..+..+++|++|++++| .+..++... +..+++|++|++++++ ....+++
T Consensus 106 ~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N--~l~~~~~~~------~~~l~~L~~L~l~~N~-------~~~~~~~ 166 (208)
T 2o6s_A 106 ALNTNQLQSLPD----GVFDKLTQLKDLRLYQN--QLKSVPDGV------FDRLTSLQYIWLHDNP-------WDCTCPG 166 (208)
T ss_dssp ECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCSCCCTTT------TTTCTTCCEEECCSCC-------BCCCTTT
T ss_pred EcCCCcCcccCH----hHhccCCcCCEEECCCC--ccceeCHHH------hccCCCccEEEecCCC-------eecCCCC
Confidence 777777665433 34667777777777763 333343321 2456677777776652 2344566
Q ss_pred ccEEeeCCCCCCCCCCC
Q 035893 692 LTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 692 L~~L~l~~c~~l~~l~~ 708 (755)
|++|+++.|..-+.+|+
T Consensus 167 l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRN 183 (208)
T ss_dssp THHHHHHHHHCTTTBBC
T ss_pred HHHHHHHHHhCCceeec
Confidence 67777666654445554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=4.9e-11 Score=115.33 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=77.3
Q ss_pred eEEEecCCCCCccCCCCCCCCCceeEEeccCcCccccc-ccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCC
Q 035893 540 TISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALP-KGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGN 616 (755)
Q Consensus 540 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~ 616 (755)
.++++++ .++.+|..+. +.+++|++++|......+ ..+..+++|+.|+++++ +..+. ..+..+++|++|++++|
T Consensus 15 ~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4444444 3344444332 234555555554322222 12445555555555554 22222 23445555666666666
Q ss_pred cccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccc-cccccCCCCccEE
Q 035893 617 MEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERL-SSSIVDLQNLTQL 695 (755)
Q Consensus 617 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L 695 (755)
.+....+ ..+..+++|++|++++| .+..++. ..+..+++|++|++++ +.++.+ |..+..+++|++|
T Consensus 92 ~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 92 RLENVQH----KMFKGLESLKTLMLRSN--RITCVGN------DSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CCCCCCG----GGGTTCSSCCEEECTTS--CCCCBCT------TSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEE
T ss_pred ccCccCH----hHhcCCcCCCEEECCCC--cCCeECH------hHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEE
Confidence 5554433 34666777777777763 2333321 1124566777777777 355555 4477778888888
Q ss_pred eeCCCC
Q 035893 696 DLGDCP 701 (755)
Q Consensus 696 ~l~~c~ 701 (755)
++++|+
T Consensus 159 ~L~~N~ 164 (220)
T 2v70_A 159 NLLANP 164 (220)
T ss_dssp ECCSCC
T ss_pred EecCcC
Confidence 888884
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=4.8e-11 Score=115.37 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=84.2
Q ss_pred CCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCccee
Q 035893 510 LPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYL 589 (755)
Q Consensus 510 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 589 (755)
+|++++.|++++|......+..+..+++|+.|++++|......|..+..+++|++|++++|......+..+..+++|+.|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 34578888888886665555567778888888888874333346667777888888888877443333345677777777
Q ss_pred EeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 590 TIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 590 ~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+++++ +..+. ..+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK----GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH----HHHhCCCCCCEEEeCC
Confidence 77766 33332 345556667777777766655443 3456666666666666
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=4.9e-11 Score=116.19 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=83.2
Q ss_pred CCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCC-CCCCCCceeEEeccCcCcccccccCCCCCCcce
Q 035893 510 LPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEG-GLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQY 588 (755)
Q Consensus 510 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 588 (755)
+|++|+.|++++|...+..|..+..+++|+.|++++| .++.++.. +..+++|++|++++|......+..+..+++|+.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 3467888888888776666777777888888888887 45555543 456778888888887744433344567777777
Q ss_pred eEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 589 LTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 589 L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
|+++++ +..++..+..+++|++|++++|.+..... ..+..+++|++|++++
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH----GAFDRLSSLTHAYLFG 168 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECTT
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeC
Confidence 777766 44443444555666666666665554332 3455566666666665
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=2e-11 Score=112.76 Aligned_cols=133 Identities=19% Similarity=0.156 Sum_probs=95.8
Q ss_pred cCCCCCcceEEEccCccc-hhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCc
Q 035893 508 GNLPPSLKSLRVNFCSKL-ELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTL 586 (755)
Q Consensus 508 ~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L 586 (755)
+..|++|+.|++++|... +.+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..+..+++|
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 445578999999999866 4777777889999999999985 5656 667778999999999998666576666678888
Q ss_pred ceeEeCCc-CCCCc--cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 587 QYLTIGGA-LPSLE--EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 587 ~~L~ls~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+.|++++| +..++ ..+..+++|++|++++|++....... ...+..+++|++|++++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR-ESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH-HHHHTTCSSCCEETTEE
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH-HHHHHhCccCcEecCCC
Confidence 88888887 43333 34556677777777777665443200 01356667777777766
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=1.9e-11 Score=121.77 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=103.1
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhccCCCCccEEE
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILI 424 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (755)
.++..++++++.. ..++ .+..+++|++|++++| .+..++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 19 ~~l~~l~l~~~~i-~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~-l--~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSV-TDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQ-ISDLSP-L--KDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCT-TSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-G--TTCSSCCEEE
T ss_pred HHHHHHHhcCCCc-cccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCc-cCCChh-h--ccCCCCCEEE
Confidence 4455566666543 3344 4677888888888888 46677767778888888888887 444444 3 7788888888
Q ss_pred eccCCcccccccccCCCCCcEEeeeCCcCCCCCcccccccccCCCccccccccccceeeccCCCccccccCCCcchhhhh
Q 035893 425 ILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTVEEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCIFSKNELPATLES 504 (755)
Q Consensus 425 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l~~~~~~~~~~~~ 504 (755)
+++ +.++.++.... ++|+.|+++++. ++.++
T Consensus 92 L~~-N~l~~l~~~~~-~~L~~L~L~~N~-l~~~~---------------------------------------------- 122 (263)
T 1xeu_A 92 VNR-NRLKNLNGIPS-ACLSRLFLDNNE-LRDTD---------------------------------------------- 122 (263)
T ss_dssp CCS-SCCSCCTTCCC-SSCCEEECCSSC-CSBSG----------------------------------------------
T ss_pred CCC-CccCCcCcccc-CcccEEEccCCc-cCCCh----------------------------------------------
Confidence 887 46666654433 556666665542 22211
Q ss_pred hhccCCCCCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcC
Q 035893 505 LEVGNLPPSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKR 572 (755)
Q Consensus 505 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 572 (755)
.++.+ ++|+.|++++|...+ ++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|+.
T Consensus 123 -~l~~l-~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 123 -SLIHL-KNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -GGTTC-TTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred -hhcCc-ccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCcc
Confidence 01122 467777777765433 33 3666777777777776 33434 4455566777777777664
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=4.6e-11 Score=125.32 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=98.3
Q ss_pred CCCCcceEEEccCccchhhhhhcC-CCCCcCeEEEecCCCCCccC-CCCCCCCCceeEEeccCcCcccccccCCCCCCcc
Q 035893 510 LPPSLKSLRVNFCSKLELIAERLD-NNTSLETISISNCENLVSFP-EGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQ 587 (755)
Q Consensus 510 ~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~ 587 (755)
+|+.++.|++++|...+..+..+. .+++|+.|++++| .+..++ ..+..+++|++|++++|......+..+..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 456899999999987766666676 8999999999999 555655 4677899999999999985554455678889999
Q ss_pred eeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCc---CCCCCccEEEEeccCCCccccc
Q 035893 588 YLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGF---HRFSSLRELIIRGCDDDMVSFP 652 (755)
Q Consensus 588 ~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~ 652 (755)
.|++++| +..+. ..+..+++|++|++++|.+..... ..+ ..+++|++|++++| .+..++
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~~l~~L~~L~L~~N--~l~~l~ 179 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV----ELIKDGNKLPKLMLLDLSSN--KLKKLP 179 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG----GGTC----CTTCCEEECCSS--CCCCCC
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH----HHhcCcccCCcCCEEECCCC--CCCccC
Confidence 9999887 33332 456667788888888887665433 223 45777777777763 344444
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=1.3e-10 Score=120.29 Aligned_cols=288 Identities=16% Similarity=0.097 Sum_probs=160.9
Q ss_pred cCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCCC--
Q 035893 310 NICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-- 387 (755)
Q Consensus 310 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 387 (755)
.+.++++|.+.+.-.-. .+..+...+++|+.|++++|.... ....-+.++.+..+.+..+ .++.
T Consensus 23 ~~~~l~~L~l~g~i~~~---------~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAE---------DFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEEECHH---------HHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEeccccHH---------HHHHHHHhhccCeEEecCcceeEE-ecCcccccccccccccccc----ccCHHH
Confidence 35678889888642111 122222225889999999987541 1111122333444544444 2332
Q ss_pred ccC--------CCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccCCCCCcEEeeeCCcCCCCCcc
Q 035893 388 VAL--------PSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQLPPSLKQLDIYNCDNIRTLTV 459 (755)
Q Consensus 388 ~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 459 (755)
+.. +++|+++++.+ .+..++...| .++++|+.+++.+ +.++.++...|.... ++..++.
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~-n~i~~i~~~aF~~~~---------~l~~l~~ 155 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRK-KTAPNLLPEALADSV---------TAIFIPL 155 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCC-SSCCEECTTSSCTTT---------CEEEECT
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCC-CCccccchhhhcCCC---------ceEEecC
Confidence 334 78899999988 3666776655 7889999999987 567777766554332 2222221
Q ss_pred cccccccCCCccccccccccceeeccCCCcccc--ccCC-CcchhhhhhhccCCCCCcceEEEccCccchhhhhhcCCCC
Q 035893 460 EEGIQCSSSSSRRYTSYLLEDLVIWECPSLTCI--FSKN-ELPATLESLEVGNLPPSLKSLRVNFCSKLELIAERLDNNT 536 (755)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~L~~l~i~~c~~l~~l--~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 536 (755)
..... ......++...+.+|..++.. +... .+...+.. ....+.++..+.+.+.-...........++
T Consensus 156 ~~~~~-------~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~ 226 (329)
T 3sb4_A 156 GSSDA-------YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK--AGLQPRDINFLTIEGKLDNADFKLIRDYMP 226 (329)
T ss_dssp TCTHH-------HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH--TTCCGGGCSEEEEEECCCHHHHHHHHHHCT
T ss_pred cchhh-------hhccccccccccccccccceeEEecCCCcHHHHHhh--cccCccccceEEEeeeecHHHHHHHHHhcC
Confidence 11000 000112233334445444421 1100 00010000 111234677777766533333222222378
Q ss_pred CcCeEEEecCCCCCccCC-CCCCCCCceeEEeccCcCccccc-ccCCCCCCcc-eeEeCCcCCCCc-cCCCCCCceeeEe
Q 035893 537 SLETISISNCENLVSFPE-GGLPCAKLRTLKIYDCKRLKALP-KGLHNLSTLQ-YLTIGGALPSLE-EEDGLPTNLHFLK 612 (755)
Q Consensus 537 ~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~l~~l~~L~-~L~ls~~~~~l~-~~~~~~~~L~~L~ 612 (755)
+|+++++++| .++.++. .+..+++|+++++.++ ++.++ ..|.++++|+ .+++.+.+..+. ..+..+++|+.++
T Consensus 227 ~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 227 NLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred CCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence 8888888887 4666665 4556888888888886 45454 3678888888 888877644544 5666777777777
Q ss_pred ecCCcccchhhhhcCcCcCCCCCccEEE
Q 035893 613 IEGNMEIWKSMIERGRGFHRFSSLRELI 640 (755)
Q Consensus 613 l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 640 (755)
++++.+..... .+|.++++|++++
T Consensus 304 l~~n~i~~I~~----~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGD----ELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECT----TTTCTTCCCCEEE
T ss_pred eCCCccCccch----hhhcCCcchhhhc
Confidence 77776655444 5577777777665
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=2.6e-10 Score=110.25 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=44.1
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
+|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|......|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 45555555554444444445556666666666663332234445556666666666665444445555555555555555
Q ss_pred Cc
Q 035893 593 GA 594 (755)
Q Consensus 593 ~~ 594 (755)
++
T Consensus 162 ~N 163 (220)
T 2v70_A 162 AN 163 (220)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=1.9e-11 Score=110.34 Aligned_cols=110 Identities=21% Similarity=0.157 Sum_probs=73.9
Q ss_pred CCCCCcceEEEccCccc-hhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcc
Q 035893 509 NLPPSLKSLRVNFCSKL-ELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQ 587 (755)
Q Consensus 509 ~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~ 587 (755)
..+++|+.|++++|... +.+|..+..+++|+.|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 33467888888888766 567777788888888888888 45555 5566788888888888886555666666677777
Q ss_pred eeEeCCc-CCCCc--cCCCCCCceeeEeecCCcccc
Q 035893 588 YLTIGGA-LPSLE--EEDGLPTNLHFLKIEGNMEIW 620 (755)
Q Consensus 588 ~L~ls~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~ 620 (755)
+|++++| +..++ ..+..+++|++|++++|.+..
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 7777766 22221 334445555555555554443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=1e-10 Score=107.92 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=77.4
Q ss_pred CCCCcCeEEEecCCCC-CccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCccCCCCCCceeeEe
Q 035893 534 NNTSLETISISNCENL-VSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFLK 612 (755)
Q Consensus 534 ~l~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~~L~ 612 (755)
..++|++|++++|... ..+|..+..+++|++|++++|.. ..+ ..+..+++|++|++++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~N------------------ 81 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNLPKLPKLKKLELSEN------------------ 81 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-SSCCCCSSCCEEEEESC------------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-hhhccCCCCCEEECcCC------------------
Confidence 4577888888887432 26666666677777777777763 333 44555555555555554
Q ss_pred ecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc----cccC
Q 035893 613 IEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS----SIVD 688 (755)
Q Consensus 613 l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~ 688 (755)
.+....+ ..+..+++|++|++++| .+..++.. ..+..+++|++|+++++ .+..+|. .+..
T Consensus 82 ----~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~-----~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 82 ----RIFGGLD----MLAEKLPNLTHLNLSGN--KLKDISTL-----EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKL 145 (168)
T ss_dssp ----CCCSCCC----HHHHHCTTCCEEECBSS--SCCSSGGG-----GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTT
T ss_pred ----cCchHHH----HHHhhCCCCCEEeccCC--ccCcchhH-----HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHh
Confidence 3333211 22344566666666653 23332210 01134556666666663 4555554 5677
Q ss_pred CCCccEEeeCCCCCCCCCCC
Q 035893 689 LQNLTQLDLGDCPKLKYFPE 708 (755)
Q Consensus 689 ~~~L~~L~l~~c~~l~~l~~ 708 (755)
+++|++|++++| .+..+|+
T Consensus 146 l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 146 LPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CSSCCEETTEET-TSCBCCS
T ss_pred CccCcEecCCCC-Chhhccc
Confidence 788888888887 4555554
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=9.7e-13 Score=145.68 Aligned_cols=188 Identities=13% Similarity=0.049 Sum_probs=109.3
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCC-------------CCCccCCCCCCCCCceeEE-eccCcCccccc
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCE-------------NLVSFPEGGLPCAKLRTLK-IYDCKRLKALP 577 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~l~~~~~~~~~l~~L~~L~-l~~~~~l~~~~ 577 (755)
+.|+.|++++|. ++.+|..++.+++|++|++++|. ..+..|..+..+++|+.|+ ++.+. ...++
T Consensus 349 ~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLR 426 (567)
T ss_dssp TTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHH
T ss_pred ccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhh
Confidence 578888888874 45778888888888888886553 2223333444455666665 33332 11111
Q ss_pred c------cCCC--CCCcceeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCc
Q 035893 578 K------GLHN--LSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDM 648 (755)
Q Consensus 578 ~------~l~~--l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 648 (755)
. .+.. ...|+.|++++| +..++. ++.+++|+.|++++|.+... | ..+..+++|++|++++| .+
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p----~~~~~l~~L~~L~Ls~N--~l 498 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-P----PALAALRCLEVLQASDN--AL 498 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-C----GGGGGCTTCCEEECCSS--CC
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-c----hhhhcCCCCCEEECCCC--CC
Confidence 0 0000 124667777766 333333 55666777777777766522 2 34667777777777763 34
Q ss_pred ccccccccccCCCCCCCCccceEecccCCCCccc--cccccCCCCccEEeeCCCCCCCCCCCCCC-----ccccccee
Q 035893 649 VSFPLEDKRLGTALPLPASLTSLTIFSFPSLERL--SSSIVDLQNLTQLDLGDCPKLKYFPEKGL-----PSSLLRLN 719 (755)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~~~L~~L~ 719 (755)
+.+| .. ..+++|++|+++++ .++.+ |..+..+++|+.|++++| .++.+|+... +++|+.|+
T Consensus 499 ~~lp-~l-------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 ENVD-GV-------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCG-GG-------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-cc-------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 4455 22 35677777777773 55555 567777777777777777 4555554221 45566554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=2e-12 Score=143.13 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=55.8
Q ss_pred CcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCceeeEeecC
Q 035893 537 SLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTNLHFLKIEG 615 (755)
Q Consensus 537 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~L~~L~l~~ 615 (755)
.|+.|++++| .++.+|. +..+++|+.|++++|.. ..+|..+.++++|+.|++++| +..++ .++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 3666666666 4555554 55566666666666663 356666666666666666655 22322 344455555555555
Q ss_pred Ccccchh-hhhcCcCcCCCCCccEEEEec
Q 035893 616 NMEIWKS-MIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 616 ~~~~~~~-~~~~~~~l~~l~~L~~L~l~~ 643 (755)
|.+.... + ..+..+++|++|++++
T Consensus 518 N~l~~~~~p----~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 518 NRLQQSAAI----QPLVSCPRLVLLNLQG 542 (567)
T ss_dssp SCCCSSSTT----GGGGGCTTCCEEECTT
T ss_pred CCCCCCCCc----HHHhcCCCCCEEEecC
Confidence 5554432 2 3355566666666655
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=6.6e-10 Score=114.89 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=64.7
Q ss_pred CCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccc-eEecccCCCCcccc
Q 035893 605 PTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLT-SLTIFSFPSLERLS 683 (755)
Q Consensus 605 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~ 683 (755)
+++|+.+++++|.+..... ..|.++++|+++++.++ +..++. .+|..+++|+ .+++.+ .++.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n---i~~I~~------~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN---LKTIGQ------RVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT---CCEECT------TTTTTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc---cceehH------HHhhCChhccEEEEEcc--cceEEc
Confidence 5677777777776655444 56777777777777762 555553 3356677777 777766 566665
Q ss_pred c-cccCCCCccEEeeCCCCCCCCCCCCCC--cccccce
Q 035893 684 S-SIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRL 718 (755)
Q Consensus 684 ~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L 718 (755)
. .+..|++|+++++.++ .++.+++.+| .++|+.+
T Consensus 290 ~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence 4 6777777777777776 5777776555 4445544
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=3.7e-10 Score=101.82 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCcCeEEEecCCCC-CccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc
Q 035893 535 NTSLETISISNCENL-VSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA 594 (755)
Q Consensus 535 l~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~ 594 (755)
.++|+.|++++|... +.+|..+..+++|++|++++|.. ..+ ..+..+++|++|++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSS
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCC
Confidence 456777777776432 25665556666666666666653 222 34444555555555444
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=4.1e-08 Score=103.61 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=88.7
Q ss_pred hcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccc-cccCCCCCCcceeEeCCcCCCCccCCCCCCcee
Q 035893 531 RLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKAL-PKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLH 609 (755)
Q Consensus 531 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~ 609 (755)
.|.++++|+.+++.++ ++.++.....-.+|+.+.+.++ +..+ ...|.+|++|+.+++.++...
T Consensus 221 aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~------------ 284 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFN------------ 284 (401)
T ss_dssp TTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCC------------
T ss_pred HhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCcccc------------
Confidence 4555666666666553 3444433322245666655322 2222 234455555555555443111
Q ss_pred eEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccC
Q 035893 610 FLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVD 688 (755)
Q Consensus 610 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~ 688 (755)
.+....... ..|.++++|+.+.+.+ .+..++. .+|..+++|+.+++.+ +++.++. .+..
T Consensus 285 -----~~~~~~I~~----~aF~~c~~L~~l~l~~---~i~~I~~------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~ 344 (401)
T 4fdw_A 285 -----DDPEAMIHP----YCLEGCPKLARFEIPE---SIRILGQ------GLLGGNRKVTQLTIPA--NVTQINFSAFNN 344 (401)
T ss_dssp -----CCTTCEECT----TTTTTCTTCCEECCCT---TCCEECT------TTTTTCCSCCEEEECT--TCCEECTTSSSS
T ss_pred -----CCcccEECH----HHhhCCccCCeEEeCC---ceEEEhh------hhhcCCCCccEEEECc--cccEEcHHhCCC
Confidence 000001111 4456666666666653 2444443 2345566777777744 4666655 6777
Q ss_pred CCCccEEeeCCCCCCCCCCCCCC---cccccceeecCCcchhHhhccCCCccccccc
Q 035893 689 LQNLTQLDLGDCPKLKYFPEKGL---PSSLLRLNIAGCPLIEEKCRKDGGQYWDLLT 742 (755)
Q Consensus 689 ~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 742 (755)
+ +|+++++.++ ....++...+ +.+++.|.+-... .+.+... ..|...+
T Consensus 345 ~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~~f~ 395 (401)
T 4fdw_A 345 T-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWRDFT 395 (401)
T ss_dssp S-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGGGGG
T ss_pred C-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchhhhh
Confidence 7 8999999888 5566666444 4577788776543 2233322 3476554
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=3e-09 Score=100.24 Aligned_cols=96 Identities=24% Similarity=0.280 Sum_probs=42.9
Q ss_pred eEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCc
Q 035893 540 TISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNM 617 (755)
Q Consensus 540 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~ 617 (755)
.++++++ .++.+|..+. ++|++|++++|. ++.+|..+.++++|+.|+++++ +..+. ..+..+++|++|++++|.
T Consensus 14 ~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNK-GLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCC-CCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4444444 3444554332 355556665555 2344444555555555555544 22222 223333444444444444
Q ss_pred ccchhhhhcCcCcCCCCCccEEEEec
Q 035893 618 EIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 618 ~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
+....+ ..+..+++|++|++++
T Consensus 90 l~~i~~----~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 90 LRCIPP----RTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CCBCCT----TTTTTCTTCCEEECCS
T ss_pred cCEeCH----HHhCCCCCCCEEECCC
Confidence 333222 2344444444444444
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=3.4e-08 Score=104.26 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=61.7
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCC----CccC-CCCCCCCCceeEEeccCcCccccc-ccCCCCCCc
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENL----VSFP-EGGLPCAKLRTLKIYDCKRLKALP-KGLHNLSTL 586 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l----~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~l~~l~~L 586 (755)
+|+.+.+..+ ....-...|.+|++|+.+++.++... ..++ ..+..|++|+.+.+.++ +..++ ..|.+|++|
T Consensus 249 ~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSC
T ss_pred CccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCc
Confidence 4555555322 22222445667777777777765321 1232 24445666666666632 33332 345666666
Q ss_pred ceeEeCCcCCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCC-CccEEEEec
Q 035893 587 QYLTIGGALPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFS-SLRELIIRG 643 (755)
Q Consensus 587 ~~L~ls~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~ 643 (755)
+.+.+..++..+. ..+..+ +|+.+++++|....... ..+.+++ .++.|.+-.
T Consensus 326 ~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~----~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 326 TQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFE----KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCC----SSCCCSCTTCCEEEECG
T ss_pred cEEEECccccEEcHHhCCCC-CCCEEEEcCCCCccccc----ccccCCCCCccEEEeCH
Confidence 6666655433333 344444 56666666554333221 3344443 455555544
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=2.2e-09 Score=101.25 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=67.4
Q ss_pred ceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCC--CCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 515 KSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEG--GLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 515 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
+.++++++.. +.+|..+ .++|++|++++| .++.++.. +..+++|++|++++|......|..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCC--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4555555533 3444433 236666666666 34444432 4456666666666666555445566666666666666
Q ss_pred Cc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 593 GA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 593 ~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
++ +..+. ..+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP----GSFEHLNSLTSLNLAS 135 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT----TSSTTCTTCCEEECTT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH----HHhhcCCCCCEEEeCC
Confidence 65 22222 224455666666666666555433 4456666666666666
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=3.2e-09 Score=100.06 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=37.5
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccC-CCCCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFP-EGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
++|++|++++|... .+|..+..+++|+.|++++|. ++.++ ..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 45555555555332 334445555555555555552 22322 2344455555555555553333333344444444444
Q ss_pred eCCc
Q 035893 591 IGGA 594 (755)
Q Consensus 591 ls~~ 594 (755)
++++
T Consensus 109 L~~N 112 (193)
T 2wfh_A 109 LHGN 112 (193)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 4443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=8.1e-10 Score=102.66 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=76.5
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCccccccc-CCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKG-LHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-l~~l~~L~~L~ 590 (755)
++|+.|++++|... .++......++|+.|++++| .++.+ ..+..+++|++|++++|... .+|.. +..+++|+.|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEE
Confidence 57777888877554 34442223347888888887 45555 45666778888888887743 44433 36677777777
Q ss_pred eCCc-CCCCcc--CCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEecc
Q 035893 591 IGGA-LPSLEE--EDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGC 644 (755)
Q Consensus 591 ls~~-~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (755)
+++| +..++. .+..+++|++|++++|++....... ...+..+++|++|++++|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~-~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR-LYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHH-HHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHH-HHHHHHCCccceeCCCcC
Confidence 7766 333332 3455666777777777654332100 012556677777777663
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=1.4e-09 Score=101.02 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=33.8
Q ss_pred CCccceEecccCCCCccccc--cccCCCCccEEeeCCCCCCCCCCCC---CC--cccccceeecCCcc
Q 035893 665 PASLTSLTIFSFPSLERLSS--SIVDLQNLTQLDLGDCPKLKYFPEK---GL--PSSLLRLNIAGCPL 725 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~---~~--~~~L~~L~i~~c~~ 725 (755)
+++|++|++++ +.++.+|. .+..+++|++|++++| .+..+|.. .+ +++|+.|++++|+.
T Consensus 87 l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 34444444444 24455554 5666777777777777 45555542 11 56677777777664
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=1.4e-08 Score=94.40 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=19.4
Q ss_pred CCccceEecccCCCCccccc-cccCCCCccEEeeCCCC
Q 035893 665 PASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 701 (755)
+++|++|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 99 l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 34444444444 24445544 24556777777777774
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=1e-08 Score=96.62 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=65.7
Q ss_pred CeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccc-cCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecC
Q 035893 539 ETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPK-GLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEG 615 (755)
Q Consensus 539 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~ 615 (755)
+.++++++ .++.+|..+.. ++++|++++|......+. .+..+++|++|+++++ +..+. ..+..+++|++|++++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67777776 56777765533 777788877764333322 2566666666666655 22221 2333444444444444
Q ss_pred CcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccc-cccccCCCCccE
Q 035893 616 NMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERL-SSSIVDLQNLTQ 694 (755)
Q Consensus 616 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~ 694 (755)
|.+....+ ..+.+ +++|++|+++++ .++.+ |..+..+++|++
T Consensus 88 N~l~~~~~----~~~~~--------------------------------l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 88 NKIKEISN----KMFLG--------------------------------LHQLKTLNLYDN-QISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp CCCCEECS----SSSTT--------------------------------CTTCCEEECCSS-CCCEECTTSSTTCTTCCE
T ss_pred CcCCccCH----HHhcC--------------------------------CCCCCEEECCCC-cCCeeCHHHhhcCCCCCE
Confidence 44433222 22334 455555555553 33333 445666667777
Q ss_pred EeeCCCC
Q 035893 695 LDLGDCP 701 (755)
Q Consensus 695 L~l~~c~ 701 (755)
|++++|+
T Consensus 131 L~L~~N~ 137 (192)
T 1w8a_A 131 LNLASNP 137 (192)
T ss_dssp EECTTCC
T ss_pred EEeCCCC
Confidence 7777664
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.84 E-value=8.1e-10 Score=126.32 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=67.2
Q ss_pred hhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCccCCCCCCc
Q 035893 529 AERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEEEDGLPTN 607 (755)
Q Consensus 529 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~~~~~~~~ 607 (755)
+..+..++.|+.|+|++| .+..+|..+..+++|++|+|++|... .+|..+.++++|+.|+|++| +..++..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 555666777777777776 34566666666777777777777643 66666777777777777766 4444445556667
Q ss_pred eeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 608 LHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 608 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
|++|++++|.+... |..+..+++|++|+|++
T Consensus 295 L~~L~L~~N~l~~l-----p~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 295 LKYFYFFDNMVTTL-----PWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSEEECCSSCCCCC-----CSSTTSCTTCCCEECTT
T ss_pred CCEEECCCCCCCcc-----ChhhhcCCCccEEeCCC
Confidence 77777777765422 23466677777777766
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=2.6e-08 Score=92.46 Aligned_cols=107 Identities=21% Similarity=0.137 Sum_probs=58.6
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCC-CCCCCCceeEEeccCcCcccccccCCCCCCcceeE
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEG-GLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLT 590 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 590 (755)
++|+.|++++|...+..+..+..+++|++|++++| .++.++.. +..+++|++|++++|......+..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 56777777776655444444566677777777776 34444433 45566677777776664433333445566666666
Q ss_pred eCCc-CCCCc-cCCCCCCceeeEeecCCccc
Q 035893 591 IGGA-LPSLE-EEDGLPTNLHFLKIEGNMEI 619 (755)
Q Consensus 591 ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~ 619 (755)
++++ +..++ ..+..+++|++|++++|+..
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655 22222 12234455555555555433
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=2.5e-07 Score=98.04 Aligned_cols=185 Identities=15% Similarity=0.087 Sum_probs=112.9
Q ss_pred CcceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccc-cccCCCCCCcceeEe
Q 035893 513 SLKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKAL-PKGLHNLSTLQYLTI 591 (755)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l 591 (755)
+|+.+.+..+ ........+.+++.|+.+.+..+. ..+........+|+.+.+.+.. ..+ ...+..+..|+.+.+
T Consensus 186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISI 260 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEE
T ss_pred CceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCCc--eecccccccccccceeEEc
Confidence 4555554433 111113345667777777665542 2333334445677777775432 222 235567777888877
Q ss_pred CCcCCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccce
Q 035893 592 GGALPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTS 670 (755)
Q Consensus 592 s~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 670 (755)
......+. ..+..+..++.+......+.. ..+..+.+|+.+.+.+ .+..++. .++..+++|++
T Consensus 261 ~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~---~i~~I~~------~aF~~c~~L~~ 324 (394)
T 4fs7_A 261 QNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD---SVKFIGE------EAFESCTSLVS 324 (394)
T ss_dssp CCTTCEECSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECT---TCCEECT------TTTTTCTTCCE
T ss_pred CCCcceeeccccccccccceeccCceeecc-------cccccccccccccccc---ccceech------hhhcCCCCCCE
Confidence 66533333 456666777777766543211 4567788888888865 3455543 33567788888
Q ss_pred EecccCCCCccccc-cccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecC
Q 035893 671 LTIFSFPSLERLSS-SIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAG 722 (755)
Q Consensus 671 L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~ 722 (755)
+++.+ .++.+.. .+..|.+|+++++..+ ++.+++.+| ..+|+.+++..
T Consensus 325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 325 IDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 88864 4777765 7778888888888755 777877777 56788887754
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.75 E-value=3.1e-07 Score=97.36 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=32.6
Q ss_pred cCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCC
Q 035893 628 RGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGD 699 (755)
Q Consensus 628 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 699 (755)
.+|.++.+|+.+++.+ .++.++. .+|..+++|+++++.. .++.+.. .+..|++|+++++..
T Consensus 314 ~aF~~c~~L~~i~lp~---~v~~I~~------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY---LVEEIGK------RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCT---TCCEECT------TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhhcCCCCCCEEEeCC---cccEEhH------HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 3455566666666543 2333432 2344556666666643 2555544 566666666666643
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.72 E-value=8.3e-09 Score=118.00 Aligned_cols=191 Identities=15% Similarity=0.074 Sum_probs=96.1
Q ss_pred CCcceEEEccCccchhhhhhcCCCCCcCeEEEecCC----CCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcc
Q 035893 512 PSLKSLRVNFCSKLELIAERLDNNTSLETISISNCE----NLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQ 587 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~ 587 (755)
+.++.|++.++.... .+..+.....|+.+.+.+.. .+...+..+..++.|+.|++++|.. ..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCC
Confidence 568888888775544 34333333444444433321 2333455677788999999999984 47777777889999
Q ss_pred eeEeCCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCC
Q 035893 588 YLTIGGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPA 666 (755)
Q Consensus 588 ~L~ls~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (755)
+|+|++| +..++..++.+++|++|+|++|.+.. .+ ..+..+++|++|+|++| .+..+|... ..++
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp----~~~~~l~~L~~L~L~~N--~l~~lp~~~-------~~l~ 316 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LP----AELGSCFQLKYFYFFDN--MVTTLPWEF-------GNLC 316 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CC----SSGGGGTTCSEEECCSS--CCCCCCSST-------TSCT
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cC----hhhcCCCCCCEEECCCC--CCCccChhh-------hcCC
Confidence 9999987 55555566778889999999988763 22 56788888999999884 455666543 5788
Q ss_pred ccceEecccCCCCccccccccCCCC-ccEEeeCCCCCCCCCCCCCCcccccceeecCC
Q 035893 667 SLTSLTIFSFPSLERLSSSIVDLQN-LTQLDLGDCPKLKYFPEKGLPSSLLRLNIAGC 723 (755)
Q Consensus 667 ~L~~L~l~~~~~l~~l~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 723 (755)
+|++|++++++....+|..+..+.. +..+++++|.....+ +..|..|+++++
T Consensus 317 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p~~l~~l~l~~n 369 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----PHERRFIEINTD 369 (727)
T ss_dssp TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC---------
T ss_pred CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC-----ccccceeEeecc
Confidence 8888888886444455554433321 223677777433333 456777777766
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=1.2e-10 Score=110.61 Aligned_cols=124 Identities=18% Similarity=0.152 Sum_probs=69.7
Q ss_pred CcceEEEccC-ccchhhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEe
Q 035893 513 SLKSLRVNFC-SKLELIAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTI 591 (755)
Q Consensus 513 ~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 591 (755)
.++...+.+. +.++.+|..+..+++|++|++++| .+..+| .+..+++|++|++++|. +..+|..+..+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence 3444444433 123344446777888888888887 455566 56667888888888887 4456655555566777777
Q ss_pred CCc-CCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 592 GGA-LPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 592 s~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
++| +..++ .+..+++|++|++++|.+...... ..+..+++|++|++++
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECS
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecC
Confidence 665 22221 223334555555555544432211 1234455555555554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=1.4e-07 Score=86.79 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=35.3
Q ss_pred CCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCcc
Q 035893 560 AKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLR 637 (755)
Q Consensus 560 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 637 (755)
++|++|++++|......|..+.++++|++|+++++ +..++ ..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR----GAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH----HHhcCCCCCC
Confidence 34444444444433333334444444444444444 22222 122344445555555554443322 2345555555
Q ss_pred EEEEec
Q 035893 638 ELIIRG 643 (755)
Q Consensus 638 ~L~l~~ 643 (755)
+|++++
T Consensus 106 ~L~L~~ 111 (170)
T 3g39_A 106 HIWLLN 111 (170)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 555555
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.60 E-value=1.6e-07 Score=86.57 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecCCcccchhhhhcCcCcCCCCCcc
Q 035893 560 AKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLR 637 (755)
Q Consensus 560 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 637 (755)
++|++|++++|......|..+.++++|++|+++++ +..++ ..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR----GAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH----HHhccccCCC
Confidence 34444444444433333334444444444444444 22222 122334444455555444443222 2345555555
Q ss_pred EEEEec
Q 035893 638 ELIIRG 643 (755)
Q Consensus 638 ~L~l~~ 643 (755)
+|++++
T Consensus 109 ~L~L~~ 114 (174)
T 2r9u_A 109 HIYLYN 114 (174)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 555555
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.58 E-value=2.2e-10 Score=108.84 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=58.0
Q ss_pred CCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCcCCCCccCCCCCCceeeEeecCCcccchhhhhcCcCcCCCC
Q 035893 555 GGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGALPSLEEEDGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFS 634 (755)
Q Consensus 555 ~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 634 (755)
.+..+++|++|++++|. +..+| .+..+++|+.|++++| .+... +..+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n----------------------~l~~l-----~~~~~~~~ 93 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN----------------------LIKKI-----ENLDAVAD 93 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE----------------------EECSC-----SSHHHHHH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC----------------------Ccccc-----cchhhcCC
Confidence 45557777777777776 34455 5556666666666655 32211 12233345
Q ss_pred CccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCccccc--cccCCCCccEEeeCCCC
Q 035893 635 SLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLERLSS--SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 635 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~ 701 (755)
+|++|++++| .+..++. . ..+++|++|++++ +.+..++. .+..+++|++|++++|+
T Consensus 94 ~L~~L~L~~N--~l~~l~~-~-------~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 94 TLEELWISYN--QIASLSG-I-------EKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HCSEEEEEEE--ECCCHHH-H-------HHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCEEECcCC--cCCcCCc-c-------ccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 5555555553 2223331 1 2455566666655 34555443 56667777777777773
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.49 E-value=4.2e-07 Score=83.43 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=54.5
Q ss_pred cceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCcc-CCCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeC
Q 035893 514 LKSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSF-PEGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIG 592 (755)
Q Consensus 514 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls 592 (755)
.+.++++++. ++.+|..+ .++|+.|++++| .+..+ +..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3455555553 23344333 355666666666 33333 4445556666666666665433333344566666666666
Q ss_pred Cc-CCCCc-cCCCCCCceeeEeecCCccc
Q 035893 593 GA-LPSLE-EEDGLPTNLHFLKIEGNMEI 619 (755)
Q Consensus 593 ~~-~~~l~-~~~~~~~~L~~L~l~~~~~~ 619 (755)
++ +..++ ..+..+++|++|++++|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55 33333 23555667777777777654
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=5.2e-07 Score=83.12 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=49.0
Q ss_pred ceEEEccCccchhhhhhcCCCCCcCeEEEecCCCCCcc-CCCCCCCCCceeEEeccCcCcccccc-cCCCCCCcceeEeC
Q 035893 515 KSLRVNFCSKLELIAERLDNNTSLETISISNCENLVSF-PEGGLPCAKLRTLKIYDCKRLKALPK-GLHNLSTLQYLTIG 592 (755)
Q Consensus 515 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~ls 592 (755)
+.++++++. ++.+|..+ .++|++|++++|. +..+ |..+..+++|++|++++|.. ..+|. .+.++++|+.|+++
T Consensus 15 ~~l~~~~n~-l~~iP~~~--~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGI--PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSC-CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCC-CCccCCCc--CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECC
Confidence 344454443 23334333 2555555555553 3332 33444555555555555553 22332 34555566666665
Q ss_pred Cc-CCCCcc-CCCCCCceeeEeecCCccc
Q 035893 593 GA-LPSLEE-EDGLPTNLHFLKIEGNMEI 619 (755)
Q Consensus 593 ~~-~~~l~~-~~~~~~~L~~L~l~~~~~~ 619 (755)
++ +..++. .+..+++|++|++++|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55 333332 2455566666666666544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.34 E-value=3e-08 Score=103.67 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=32.8
Q ss_pred CCcceEEEccCccchhhh----hhcC-CCCCcCeEEEecCCCCCccCCCC-CCCCCceeEEeccCcC
Q 035893 512 PSLKSLRVNFCSKLELIA----ERLD-NNTSLETISISNCENLVSFPEGG-LPCAKLRTLKIYDCKR 572 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~----~~l~-~l~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~ 572 (755)
+.|+.|++++|....... ..+. ..++|++|++++|.....-...+ ..+++|++|++++|..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 567888888877654332 2222 23577777777774221111111 1244666677766653
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.29 E-value=4.5e-05 Score=80.56 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=37.6
Q ss_pred cccEEEEecCCCCcccC-ccccCCCCccEEEEccC--CCcccCCCccC--CCCccEEEeccCCCCcccchhhhccCCCCc
Q 035893 346 RLEYLKLSNCEGLVKLP-QSSLSLSSLREIEICKC--SSLVSFPEVAL--PSKLKKIQISYCDALKSLPEAWMCHTNSSL 420 (755)
Q Consensus 346 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~--~~l~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 420 (755)
.|+.+.+... ++.+. ..|.++++|+.+.+..+ ..++.++..++ +.+|+.+.+.++ +..+....+ ..+.+|
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF-~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF-HHCEEL 139 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT-TTCTTC
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh-hhhccc
Confidence 4666666543 33333 25666677777776554 22444443322 455555444332 333333333 455566
Q ss_pred cEEEec
Q 035893 421 EILIIL 426 (755)
Q Consensus 421 ~~L~l~ 426 (755)
+.+.+.
T Consensus 140 ~~i~lp 145 (394)
T 4gt6_A 140 DTVTIP 145 (394)
T ss_dssp CEEECC
T ss_pred cccccc
Confidence 666553
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=9.4e-07 Score=79.91 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=53.1
Q ss_pred ccccEEEEecCCCCcccCccccCCCCccEEEEccCCCcccCC--CccC----CCCccEEEeccCCCCcccchhhhccCCC
Q 035893 345 CRLEYLKLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVAL----PSKLKKIQISYCDALKSLPEAWMCHTNS 418 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 418 (755)
.+|+.|++++|.....--..+..+++|++|++++|..+++.. .++. .++|++|++++|..+++.....+ ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 357777777776444433455667777777777776665432 1222 23577777777766665444433 4566
Q ss_pred CccEEEeccCCcccc
Q 035893 419 SLEILIILYCNSLTY 433 (755)
Q Consensus 419 ~L~~L~l~~c~~l~~ 433 (755)
+|++|++++|+.+++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777766665
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=5.9e-05 Score=79.64 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=77.4
Q ss_pred ccC-CCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCC--CCcccCc-cccCCCCccEEEEccCCCccc
Q 035893 309 NNI-CSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCE--GLVKLPQ-SSLSLSSLREIEICKCSSLVS 384 (755)
Q Consensus 309 ~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~-~~~~l~~L~~L~l~~~~~l~~ 384 (755)
.++ ..|+++.+-. .++.+....| ..|.+|+.+.+..+. .+..+.. .|..+.+|+.+.+..+ +..
T Consensus 60 ~~~~~~L~sI~iP~--svt~Ig~~AF--------~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~ 127 (394)
T 4gt6_A 60 CNYKYVLTSVQIPD--TVTEIGSNAF--------YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTE 127 (394)
T ss_dssp TTCCSCCCEEEECT--TCCEECTTTT--------TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSE
T ss_pred cCCCCcCEEEEECC--CeeEEhHHHh--------hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cce
Confidence 344 4588888853 4666644322 345889999997752 3444443 6778888888777554 455
Q ss_pred CCCc--cCCCCccEEEeccCCCCcccchhhhccCCCCccEEEeccCCcccccccccC-CCCCcEEee
Q 035893 385 FPEV--ALPSKLKKIQISYCDALKSLPEAWMCHTNSSLEILIILYCNSLTYIAEVQL-PPSLKQLDI 448 (755)
Q Consensus 385 ~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l 448 (755)
++.. ..+.+|+.+.+... ...+....+ ..+.+|+.+.+.. .++.+....+ ...|+.+.+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F-~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG--VTSVADGMF-SYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEE
T ss_pred ehhhhhhhhcccccccccce--eeeecccce-ecccccccccccc--eeeEeccccccccceeEEEE
Confidence 5443 34889999998643 445555444 6788899888864 4666665544 234555554
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.17 E-value=5.3e-08 Score=101.75 Aligned_cols=165 Identities=14% Similarity=0.013 Sum_probs=108.0
Q ss_pred CCCcCeEEEecCCCCCc----cCCCCC-CCCCceeEEeccCcCcccccc-cCCCCCCcceeEeCCcCCCCc---cC----
Q 035893 535 NTSLETISISNCENLVS----FPEGGL-PCAKLRTLKIYDCKRLKALPK-GLHNLSTLQYLTIGGALPSLE---EE---- 601 (755)
Q Consensus 535 l~~L~~L~l~~~~~l~~----~~~~~~-~l~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~ls~~~~~l~---~~---- 601 (755)
.++|+.|++++|..... +...+. ..++|++|++++|........ ....+++|+.|++++| .--. ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 56899999999953321 221222 236999999999985332222 2245678999999998 2211 11
Q ss_pred -CCCCCceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCc
Q 035893 602 -DGLPTNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLE 680 (755)
Q Consensus 602 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 680 (755)
....++|++|++++|.+.......+...+..+++|++|++++|. +...+.. .....+...++|++|++++| .++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~--~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLE--LLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHH--HHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHH--HHHHHHhcCCCcCeEECCCC-CCC
Confidence 13457899999999998775554433556788999999999853 3221110 00112245678999999996 555
Q ss_pred c-----ccccccCCCCccEEeeCCCCCCCCC
Q 035893 681 R-----LSSSIVDLQNLTQLDLGDCPKLKYF 706 (755)
Q Consensus 681 ~-----l~~~~~~~~~L~~L~l~~c~~l~~l 706 (755)
. +...+...++|++|++++| .++..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~ 254 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFN-ELSSE 254 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCC-CCCHH
Confidence 3 3445667899999999999 45543
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.9e-06 Score=77.94 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=52.0
Q ss_pred CceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCC----CCccceEecccCCCCcc
Q 035893 606 TNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPL----PASLTSLTIFSFPSLER 681 (755)
Q Consensus 606 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~ 681 (755)
.+|+.||+++|.++.... ..+.++++|++|++++| ..++.-.... +.. .++|++|++++|+.++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C-~~ItD~gL~~------L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKC-HYIEDGCLER------LSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESC-TTCCHHHHHH------HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCC-CccCHHHHHH------HHhcccccCCCCEEEcCCCCcCCH
Confidence 357777777777555444 34567788888888874 3333322211 011 23567777777766655
Q ss_pred ccc-cccCCCCccEEeeCCCCCCCC
Q 035893 682 LSS-SIVDLQNLTQLDLGDCPKLKY 705 (755)
Q Consensus 682 l~~-~~~~~~~L~~L~l~~c~~l~~ 705 (755)
--- .+..+++|++|++++|+.+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 211 455667777777777766554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=0.00016 Score=75.90 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=50.9
Q ss_pred ccccEEEEecCCCCcccCc-cccCCCCccEEEEccCCCcccCCCccC-CCCccEEEeccCCCCcccchhhhccCCCCccE
Q 035893 345 CRLEYLKLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFPEVAL-PSKLKKIQISYCDALKSLPEAWMCHTNSSLEI 422 (755)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 422 (755)
.+|+.+.+.. .++.+++ .|.++.+|+.+++..+ ++.++..++ -.+|+.+.+..+ +..+....+ .. .+|+.
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~~~--l~~I~~~aF-~~-~~L~~ 117 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGMER--VKKFGDYVF-QG-TDLDD 117 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEECTT--CCEECTTTT-TT-CCCSE
T ss_pred cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECCce--eeEecccee-cc-CCccc
Confidence 6788888864 3455554 6788889999988653 556655443 236777766533 555555544 33 36888
Q ss_pred EEeccCCcccccccc
Q 035893 423 LIILYCNSLTYIAEV 437 (755)
Q Consensus 423 L~l~~c~~l~~~~~~ 437 (755)
+.+.. .++.+...
T Consensus 118 i~lp~--~~~~i~~~ 130 (379)
T 4h09_A 118 FEFPG--ATTEIGNY 130 (379)
T ss_dssp EECCT--TCCEECTT
T ss_pred ccCCC--cccccccc
Confidence 87754 34444433
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=3.2e-06 Score=87.41 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=71.8
Q ss_pred hhhhcCCCCCcCeEEEecCCCCCccCCCCCCCCCceeEEeccCcCcccccccC--CCCCCcceeEeCCcCCCCccCCCCC
Q 035893 528 IAERLDNNTSLETISISNCENLVSFPEGGLPCAKLRTLKIYDCKRLKALPKGL--HNLSTLQYLTIGGALPSLEEEDGLP 605 (755)
Q Consensus 528 ~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~l--~~l~~L~~L~ls~~~~~l~~~~~~~ 605 (755)
+...+..+|+|++|.+++|..+ .++. + ..++|++|++..|.........+ ..+|+|+.|+++.+ ....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~-~~~~------ 233 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG-VEDY------ 233 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECB-CGGG------
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecc-cccc------
Confidence 3344566788888888887333 2333 2 26788888887766332221122 35677777776421 0000
Q ss_pred CceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEeccCCCcccccccccccCCCCCCCCccceEecccCCCCcc----
Q 035893 606 TNLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRGCDDDMVSFPLEDKRLGTALPLPASLTSLTIFSFPSLER---- 681 (755)
Q Consensus 606 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---- 681 (755)
.++......... .....+++|++|++++|.... ..+.... . .+.+++|++|+++. +.+..
T Consensus 234 --------~~~~~~~~l~~~--l~~~~~p~Lr~L~L~~~~i~~-~~~~~la---~-a~~~~~L~~LdLs~-n~L~d~G~~ 297 (362)
T 2ra8_A 234 --------GFDGDMNVFRPL--FSKDRFPNLKWLGIVDAEEQN-VVVEMFL---E-SDILPQLETMDISA-GVLTDEGAR 297 (362)
T ss_dssp --------TCCSCGGGTGGG--SCTTTCTTCCEEEEESCTTHH-HHHHHHH---H-CSSGGGCSEEECCS-SCCBHHHHH
T ss_pred --------ccchhHHHHHHH--HhcCCCCCcCEEeCCCCCCch-HHHHHHH---h-CccCCCCCEEECCC-CCCChHHHH
Confidence 000000000000 001235566666666532111 0000000 0 02456777777765 34544
Q ss_pred -ccccccCCCCccEEeeCCC
Q 035893 682 -LSSSIVDLQNLTQLDLGDC 700 (755)
Q Consensus 682 -l~~~~~~~~~L~~L~l~~c 700 (755)
++..+..+++|+.|++++|
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSB
T ss_pred HHHhhcccCCcceEEECCCC
Confidence 3445567788899998888
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=5.4e-06 Score=85.72 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=43.7
Q ss_pred cccccEEEEecCCC---------CcccCccccCCCCccEEEEccCCCcccCCCccCCCCccEEEeccCCCCcccchhhhc
Q 035893 344 SCRLEYLKLSNCEG---------LVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIQISYCDALKSLPEAWMC 414 (755)
Q Consensus 344 ~~~L~~L~l~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 414 (755)
+++|+.|.+.+... ...+...+..+|+|+.|.+++|..+ .++.. ..++|++|++..|.........+..
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 46777777754321 0123334556777888888776332 23332 3677788877766632222222211
Q ss_pred cCCCCccEEEec
Q 035893 415 HTNSSLEILIIL 426 (755)
Q Consensus 415 ~~~~~L~~L~l~ 426 (755)
..+|+|+.|+++
T Consensus 216 ~~lp~L~~L~L~ 227 (362)
T 2ra8_A 216 SDLPNLEKLVLY 227 (362)
T ss_dssp SBCTTCCEEEEE
T ss_pred ccCCCCcEEEEe
Confidence 356677777664
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.07 E-value=6.6e-06 Score=85.39 Aligned_cols=93 Identities=23% Similarity=0.183 Sum_probs=42.2
Q ss_pred chhhhhhcCCCCCcCeEEEecCCCCCccC-CCCCCCCCceeEEeccCcCcccccccCCCCCCcceeEeCCc-CCCCcc-C
Q 035893 525 LELIAERLDNNTSLETISISNCENLVSFP-EGGLPCAKLRTLKIYDCKRLKALPKGLHNLSTLQYLTIGGA-LPSLEE-E 601 (755)
Q Consensus 525 ~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~~-~ 601 (755)
++.+|. +..+++|++|+|+++..++.++ ..+..+++|++|+|++|......|..+.++++|+.|+|+++ +..++. .
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 334444 5555555555555411344433 23444555555555555533333334455555555555544 222221 1
Q ss_pred CCCCCceeeEeecCCccc
Q 035893 602 DGLPTNLHFLKIEGNMEI 619 (755)
Q Consensus 602 ~~~~~~L~~L~l~~~~~~ 619 (755)
+..++ |+.|++.+|++.
T Consensus 100 ~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TCSCC-CCEEECCSSCCC
T ss_pred cccCC-ceEEEeeCCCcc
Confidence 22222 555555555443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00049 Score=72.08 Aligned_cols=79 Identities=6% Similarity=0.108 Sum_probs=42.7
Q ss_pred ccCCCcCeEEEccCCCcchhhhhhHHHHHHhhhhccccccEEEEecCCCCcccCc-cccCCCCccEEEEccCCCcccCCC
Q 035893 309 NNICSLKRLVITSCPTLQSLVAEEEKDQQQQLCELSCRLEYLKLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFPE 387 (755)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~ 387 (755)
....+++++.+.. .++.|....| ..|.+|+.+.+..+ +..+.. .+.++ +|+.+.+..+ +..++.
T Consensus 43 ~~~~~i~~v~ip~--~vt~Ig~~aF--------~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~ 107 (379)
T 4h09_A 43 KDRDRISEVRVNS--GITSIGEANF--------NSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGD 107 (379)
T ss_dssp GGGGGCSEEEECT--TEEEECTTTT--------TTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECT
T ss_pred ccccCCEEEEeCC--CccChHHHHh--------hCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEecc
Confidence 3445677777652 4565543321 23467788777643 344443 45554 5666666433 444444
Q ss_pred ccC-CCCccEEEeccC
Q 035893 388 VAL-PSKLKKIQISYC 402 (755)
Q Consensus 388 ~~~-l~~L~~L~l~~~ 402 (755)
.++ ..+|+.+.+.+.
T Consensus 108 ~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 108 YVFQGTDLDDFEFPGA 123 (379)
T ss_dssp TTTTTCCCSEEECCTT
T ss_pred ceeccCCcccccCCCc
Confidence 333 346777777643
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.05 E-value=6.7e-06 Score=85.37 Aligned_cols=100 Identities=21% Similarity=0.151 Sum_probs=76.2
Q ss_pred CeEEEecCCCCCccCCCCCCCCCceeEEecc-CcCcccccccCCCCCCcceeEeCCc-CCCCc-cCCCCCCceeeEeecC
Q 035893 539 ETISISNCENLVSFPEGGLPCAKLRTLKIYD-CKRLKALPKGLHNLSTLQYLTIGGA-LPSLE-EEDGLPTNLHFLKIEG 615 (755)
Q Consensus 539 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~-~~~l~~~~~~l~~l~~L~~L~ls~~-~~~l~-~~~~~~~~L~~L~l~~ 615 (755)
..++.+++..++.+|. +..+++|++|++++ |......+..+.++++|+.|+|+++ +..+. ..+..+++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3567777657888998 88899999999997 7754444467899999999999988 33333 3567889999999999
Q ss_pred CcccchhhhhcCcCcCCCCCccEEEEecc
Q 035893 616 NMEIWKSMIERGRGFHRFSSLRELIIRGC 644 (755)
Q Consensus 616 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (755)
|.+....+ ..+..++ |++|++.+|
T Consensus 90 N~l~~~~~----~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSW----KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCCSCCCS----TTTCSCC-CCEEECCSS
T ss_pred CccceeCH----HHcccCC-ceEEEeeCC
Confidence 98876543 3455555 999999885
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.36 E-value=5.8e-05 Score=70.02 Aligned_cols=16 Identities=6% Similarity=-0.052 Sum_probs=8.9
Q ss_pred cccCCCCccEEeeCCC
Q 035893 685 SIVDLQNLTQLDLGDC 700 (755)
Q Consensus 685 ~~~~~~~L~~L~l~~c 700 (755)
.+...++|++|++++|
T Consensus 146 ~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHCSSCCEEECCCS
T ss_pred HHHhCCCcCEEeccCC
Confidence 4444555666666555
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.30 E-value=3.7e-05 Score=71.39 Aligned_cols=38 Identities=16% Similarity=0.007 Sum_probs=17.2
Q ss_pred CceeeEee--cCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 606 TNLHFLKI--EGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 606 ~~L~~L~l--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
++|++|++ ++|.+.......+...+...+.|++|++++
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 34455555 444444433222223344445555555555
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.99 E-value=0.00057 Score=66.69 Aligned_cols=82 Identities=18% Similarity=0.057 Sum_probs=59.2
Q ss_pred hhccccccEEEEecCCCCc--ccCccccCCCCccEEEEccCCCcccCCCccCCC--CccEEEeccCCCCcccch------
Q 035893 341 CELSCRLEYLKLSNCEGLV--KLPQSSLSLSSLREIEICKCSSLVSFPEVALPS--KLKKIQISYCDALKSLPE------ 410 (755)
Q Consensus 341 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~--~L~~L~l~~~~~~~~~~~------ 410 (755)
...+++|+.|+|++|...+ .++..+..+++|+.|+|++|. +..+..+..+. +|++|++++|+....++.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3456899999999998765 556667789999999999985 55544444444 899999999986554431
Q ss_pred hhhccCCCCccEEE
Q 035893 411 AWMCHTNSSLEILI 424 (755)
Q Consensus 411 ~~~~~~~~~L~~L~ 424 (755)
..+ ..+|+|+.|+
T Consensus 245 ~il-~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIR-ERFPKLLRLD 257 (267)
T ss_dssp HHH-HHCTTCCEES
T ss_pred HHH-HHCcccCeEC
Confidence 112 5678888776
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.72 E-value=0.00042 Score=67.66 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=50.6
Q ss_pred CCcceEEEccCccch--hhhhhcCCCCCcCeEEEecCCCCCccCCCCCCCC--CceeEEeccCcCcccccc-------cC
Q 035893 512 PSLKSLRVNFCSKLE--LIAERLDNNTSLETISISNCENLVSFPEGGLPCA--KLRTLKIYDCKRLKALPK-------GL 580 (755)
Q Consensus 512 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~-------~l 580 (755)
++|+.|++++|...+ .++..+..+++|+.|+|++| .+..+. .+..+. +|++|++++|+....+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 578888888887655 44555667888888888887 444432 122233 788888888886654442 34
Q ss_pred CCCCCcceeEe
Q 035893 581 HNLSTLQYLTI 591 (755)
Q Consensus 581 ~~l~~L~~L~l 591 (755)
..+|+|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 56667766653
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.30 E-value=0.11 Score=44.39 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=21.0
Q ss_pred CCccceEecccCCCCccccc-cccCCCCccEEeeCCCC
Q 035893 665 PASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGDCP 701 (755)
Q Consensus 665 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 701 (755)
+++|++|+|++ +.++.+|. .+..+++|++|+|++|+
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 44566666666 45555655 44556666666666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.93 E-value=0.07 Score=48.95 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=15.9
Q ss_pred ceeeEeecCCcccchhhhhcCcCcCCCCCccEEEEec
Q 035893 607 NLHFLKIEGNMEIWKSMIERGRGFHRFSSLRELIIRG 643 (755)
Q Consensus 607 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (755)
.|+.|+|++|.+.......+..++..-+.|++|+|++
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 3444444444444333322223333444555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.85 E-value=0.29 Score=41.59 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=27.5
Q ss_pred CCc--cccccccCCCCccEEeeCCCCCCCCCCCCCC--cccccceeecCCcc
Q 035893 678 SLE--RLSSSIVDLQNLTQLDLGDCPKLKYFPEKGL--PSSLLRLNIAGCPL 725 (755)
Q Consensus 678 ~l~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 725 (755)
.++ .+|..+. ++|++|+|++| +++.++...| +++|+.|++.+||.
T Consensus 19 ~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 19 GLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 444 5554332 45677777777 5666766555 55677777777663
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.99 E-value=0.075 Score=48.76 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=15.1
Q ss_pred CcceEEEccC-ccch----hhhhhcCCCCCcCeEEEecC
Q 035893 513 SLKSLRVNFC-SKLE----LIAERLDNNTSLETISISNC 546 (755)
Q Consensus 513 ~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~ 546 (755)
.|++|+++++ .... .+...+..-+.|++|+|++|
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 80 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC
Confidence 4555555543 2211 12333444445555555555
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.44 E-value=84 Score=24.65 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCCCCccceEecccCCCCccccc-cccCCCCccEEeeCC
Q 035893 659 GTALPLPASLTSLTIFSFPSLERLSS-SIVDLQNLTQLDLGD 699 (755)
Q Consensus 659 ~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 699 (755)
..+|..+++|+++.+-. .++.+.. .+..|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Done!