BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035894
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
          Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
          Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
 pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
 pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
          Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
          Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
          Inhibitor
 pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
          Inhibitor
 pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected
          Pictet-Spenglerase Ac-Tivity Of Strictosidine Synthase
          (Str1): From The Common Tryp-Toline Skeleton To The
          Rare Piperazino-Indole Framework
 pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected
          Pictet-Spenglerase Ac-Tivity Of Strictosidine Synthase
          (Str1): From The Common Tryp-Toline Skeleton To The
          Rare Piperazino-Indole Framework
          Length = 322

 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 37 KLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPF 87
          ++ + A    P S  FD   KG Y  V DGR++K++    G+ +FA  +P+
Sbjct: 11 EILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY 61


>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
          Strictosidine
 pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
          Strictosidine
          Length = 302

 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 46 GPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPF 87
           P S  FD   KG Y  V DGR++K++    G+ +FA  +P+
Sbjct: 11 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY 52


>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
          Entry To The Monoterpenoid Indole Alkaloid Family
 pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
          Entry To The Monoterpenoid Indole Alkaloid Family
          Length = 322

 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 37 KLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPF 87
          ++ + A    P S  FD   KG Y  V DGR+ K++    G+ +FA  +P+
Sbjct: 11 EILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPY 61


>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From
           Mycobacterium Tuberculosis
 pdb|2G85|A Chain A, Crystal Structure Of Chorismate Synthase From
           Mycobacterium Tuberculosis At 2.22 Angstrons Of
           Resolution
          Length = 401

 Score = 26.2 bits (56), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 19  SFGLPSNAGGSRKGNHHLKLQLPAGVVGPESL 50
           + GLP   G    G+H L  QL A V+G +++
Sbjct: 227 ALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAI 258


>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase
 pdb|2O12|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
           With Fmn
 pdb|2QHF|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
           With Nca
          Length = 407

 Score = 26.2 bits (56), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 19  SFGLPSNAGGSRKGNHHLKLQLPAGVVGPESL 50
           + GLP   G    G+H L  QL A V+G +++
Sbjct: 227 ALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAI 258


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.137    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,796,822
Number of Sequences: 62578
Number of extensions: 108149
Number of successful extensions: 113
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)