BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035894
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2
          Length = 329

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 31 KGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTT 85
          K +   KL +P    GPE+ AFD  GKG Y GV+ G+ILK+   K G+ +FA  T
Sbjct: 25 KKSSFQKLPVPGNRTGPEAFAFDSTGKGFYTGVTGGKILKYLPKK-GYVDFAQIT 78


>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2
          Length = 335

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 37 KLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTT 85
          KL +P    GPE+ AFD  GKG Y GVS G+ILK+   + G+ +FA  T
Sbjct: 29 KLPVPETRSGPEAFAFDSTGKGFYTGVSGGKILKYL-PETGYVDFAQIT 76


>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2
          Length = 352

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 46 GPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPF 87
           P +  FD   KG Y  V DGR++K++    G+T+FA  +PF
Sbjct: 46 APNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPF 87


>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1
          Length = 344

 Score = 41.6 bits (96), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 46 GPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPF 87
           P S  FD   KG Y  V DGR++K++    G+ +FA  +P+
Sbjct: 42 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY 83


>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1
          PE=3 SV=1
          Length = 342

 Score = 41.6 bits (96), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 46 GPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPF 87
           P S  FD   KG Y  V DGR++K++    G+ +FA  +P+
Sbjct: 40 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY 81


>sp|Q96J84|KIRR1_HUMAN Kin of IRRE-like protein 1 OS=Homo sapiens GN=KIRREL PE=1 SV=2
          Length = 757

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 4   SLLIIFFFLALTLSPSFGLPSNAGGSRKGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGV 63
           S+L+IFFF+AL     F L     GSRK     KL +    V  E L    + +   A V
Sbjct: 506 SILLIFFFIALV----FFLYRRRKGSRKDVTLRKLDIKVETVNREPLTMHSDREDDTASV 561

Query: 64  SDG-RILK 70
           S   R++K
Sbjct: 562 STATRVMK 569


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,040,755
Number of Sequences: 539616
Number of extensions: 1493764
Number of successful extensions: 2534
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2529
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)