Query 035894
Match_columns 88
No_of_seqs 100 out of 210
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 99.3 3.8E-12 8.3E-17 103.1 7.3 47 42-88 51-99 (376)
2 PF13449 Phytase-like: Esteras 93.3 0.18 3.9E-06 39.0 4.8 42 45-86 147-206 (326)
3 TIGR02604 Piru_Ver_Nterm putat 93.0 0.36 7.8E-06 37.6 6.1 49 35-84 4-70 (367)
4 PF00400 WD40: WD domain, G-be 91.7 0.33 7.2E-06 25.3 3.3 28 45-72 12-39 (39)
5 PRK13684 Ycf48-like protein; P 91.6 1.3 2.7E-05 34.5 7.6 46 34-81 36-81 (334)
6 PF08450 SGL: SMP-30/Gluconola 91.1 0.46 9.9E-06 34.1 4.4 32 47-79 186-218 (246)
7 TIGR02604 Piru_Ver_Nterm putat 90.9 0.47 1E-05 37.0 4.6 39 45-84 124-182 (367)
8 PF01436 NHL: NHL repeat; Int 86.9 0.89 1.9E-05 23.7 2.6 25 45-70 2-27 (28)
9 COG5341 Uncharacterized protei 84.6 5.2 0.00011 29.0 6.4 64 4-73 17-85 (132)
10 PF06977 SdiA-regulated: SdiA- 82.6 2.1 4.5E-05 32.9 3.9 36 35-71 205-247 (248)
11 PF07995 GSDH: Glucose / Sorbo 82.0 2.2 4.8E-05 33.1 3.9 30 46-76 3-32 (331)
12 TIGR03866 PQQ_ABC_repeats PQQ- 81.9 2.7 5.8E-05 29.2 4.0 31 45-75 249-280 (300)
13 PF08450 SGL: SMP-30/Gluconola 81.5 1.5 3.3E-05 31.4 2.6 29 47-76 2-32 (246)
14 PF07995 GSDH: Glucose / Sorbo 80.1 1.2 2.6E-05 34.5 1.9 23 47-70 308-331 (331)
15 smart00135 LY Low-density lipo 77.1 7.6 0.00016 20.1 4.0 33 43-75 7-40 (43)
16 PRK11028 6-phosphogluconolacto 75.3 6.3 0.00014 29.3 4.5 30 45-74 175-205 (330)
17 smart00320 WD40 WD40 repeats. 75.2 5.5 0.00012 17.8 2.8 26 47-72 15-40 (40)
18 TIGR03606 non_repeat_PQQ dehyd 75.1 6 0.00013 33.1 4.7 19 47-66 148-166 (454)
19 PF13570 PQQ_3: PQQ-like domai 75.0 5.6 0.00012 21.5 3.2 24 49-74 16-39 (40)
20 TIGR03866 PQQ_ABC_repeats PQQ- 72.2 9.6 0.00021 26.4 4.5 31 45-75 31-62 (300)
21 TIGR03606 non_repeat_PQQ dehyd 72.0 18 0.00038 30.4 6.8 33 42-75 27-60 (454)
22 COG3386 Gluconolactonase [Carb 71.4 5.9 0.00013 31.2 3.7 31 45-76 213-245 (307)
23 PF03088 Str_synth: Strictosid 71.1 10 0.00022 25.1 4.2 19 62-80 33-51 (89)
24 PRK11028 6-phosphogluconolacto 70.6 12 0.00025 27.9 4.9 30 45-74 35-65 (330)
25 cd00200 WD40 WD40 domain, foun 70.6 4.7 0.0001 26.4 2.5 28 45-72 262-289 (289)
26 PF14517 Tachylectin: Tachylec 67.8 3.9 8.5E-05 31.6 2.0 28 48-76 84-111 (229)
27 smart00564 PQQ beta-propeller 66.6 14 0.00031 18.6 3.5 20 54-74 5-24 (33)
28 PF05787 DUF839: Bacterial pro 66.3 12 0.00027 31.5 4.8 41 44-84 349-416 (524)
29 KOG1036 Mitotic spindle checkp 65.1 4.1 9E-05 33.3 1.7 35 48-82 236-271 (323)
30 COG3386 Gluconolactonase [Carb 62.3 13 0.00027 29.3 3.9 32 43-74 161-193 (307)
31 KOG0318 WD40 repeat stress pro 61.8 8.5 0.00018 33.8 3.0 28 46-73 322-349 (603)
32 KOG1354 Serine/threonine prote 60.9 9.2 0.0002 32.3 3.0 29 47-75 28-56 (433)
33 PF07569 Hira: TUP1-like enhan 60.3 15 0.00033 27.3 3.8 35 48-83 70-104 (219)
34 cd00200 WD40 WD40 domain, foun 59.7 17 0.00037 23.7 3.6 29 47-75 12-40 (289)
35 COG4257 Vgb Streptogramin lyas 57.9 24 0.00052 29.2 4.9 53 35-87 266-318 (353)
36 PF06739 SBBP: Beta-propeller 56.9 22 0.00047 19.8 3.3 21 45-66 13-34 (38)
37 KOG1520 Predicted alkaloid syn 56.6 16 0.00035 30.3 3.8 41 32-73 53-93 (376)
38 PLN02919 haloacid dehalogenase 55.3 25 0.00054 32.1 5.0 37 45-82 804-841 (1057)
39 PF13449 Phytase-like: Esteras 54.2 19 0.00041 27.8 3.6 30 46-76 86-122 (326)
40 KOG0646 WD40 repeat protein [G 53.9 17 0.00037 31.2 3.5 34 37-73 213-246 (476)
41 PRK02888 nitrous-oxide reducta 53.8 22 0.00048 31.4 4.3 36 35-74 368-404 (635)
42 KOG1240 Protein kinase contain 53.4 15 0.00033 35.2 3.4 26 49-75 1310-1335(1431)
43 KOG0296 Angio-associated migra 53.1 22 0.00048 29.9 4.0 33 51-84 197-229 (399)
44 COG3211 PhoX Predicted phospha 53.0 26 0.00057 31.0 4.6 42 44-85 416-481 (616)
45 PLN00033 photosystem II stabil 51.1 97 0.0021 25.3 7.4 48 30-81 72-125 (398)
46 KOG0278 Serine/threonine kinas 50.9 16 0.00035 29.9 2.8 30 43-73 265-296 (334)
47 PF14517 Tachylectin: Tachylec 49.4 19 0.00041 27.9 2.9 37 35-73 121-157 (229)
48 TIGR02608 delta_60_rpt delta-6 49.2 35 0.00077 20.8 3.6 29 48-76 4-39 (55)
49 PLN02919 haloacid dehalogenase 48.7 48 0.001 30.3 5.7 34 44-77 739-773 (1057)
50 PLN00033 photosystem II stabil 48.0 44 0.00096 27.3 5.0 46 35-81 318-363 (398)
51 PF04879 Molybdop_Fe4S4: Molyb 47.7 23 0.00049 20.4 2.5 20 56-75 14-33 (55)
52 COG5226 CEG1 mRNA capping enzy 46.9 19 0.00041 30.1 2.7 36 45-81 218-253 (404)
53 COG3168 PilP Tfp pilus assembl 46.6 15 0.00033 27.7 1.9 19 57-75 125-143 (170)
54 PLN00181 protein SPA1-RELATED; 43.9 29 0.00062 29.7 3.4 26 48-73 487-512 (793)
55 PF10282 Lactonase: Lactonase, 42.4 85 0.0018 24.1 5.5 36 35-72 284-320 (345)
56 KOG2106 Uncharacterized conser 41.6 39 0.00084 29.9 3.9 28 49-77 251-278 (626)
57 KOG3616 Selective LIM binding 41.1 17 0.00037 34.2 1.7 37 45-83 56-92 (1636)
58 KOG0315 G-protein beta subunit 40.7 25 0.00053 28.7 2.4 26 48-73 87-112 (311)
59 KOG0301 Phospholipase A2-activ 39.8 34 0.00073 30.9 3.3 42 35-79 252-293 (745)
60 PTZ00421 coronin; Provisional 39.4 46 0.00099 27.7 3.9 28 48-75 79-107 (493)
61 COG3204 Uncharacterized protei 38.4 40 0.00087 27.6 3.3 31 43-74 282-312 (316)
62 PRK13684 Ycf48-like protein; P 38.3 51 0.0011 25.6 3.8 36 45-81 260-295 (334)
63 KOG2445 Nuclear pore complex c 38.3 28 0.00061 28.9 2.4 26 48-73 17-42 (361)
64 PF03022 MRJP: Major royal jel 37.5 89 0.0019 24.0 5.0 37 48-85 189-230 (287)
65 PF02333 Phytase: Phytase; In 35.6 87 0.0019 25.9 4.9 41 31-74 197-237 (381)
66 COG4717 Uncharacterized conser 35.0 73 0.0016 29.7 4.7 59 7-75 39-102 (984)
67 cd02773 MopB_Res-Cmplx1_Nad11 34.9 51 0.0011 25.5 3.3 24 51-74 5-28 (375)
68 PF15016 DUF4520: Domain of un 34.6 30 0.00065 23.1 1.7 15 56-70 14-28 (85)
69 COG3292 Predicted periplasmic 33.9 66 0.0014 28.8 4.1 43 28-74 21-67 (671)
70 PF10282 Lactonase: Lactonase, 33.7 45 0.00097 25.6 2.8 38 36-74 184-222 (345)
71 KOG0279 G protein beta subunit 33.0 51 0.0011 27.0 3.1 25 49-73 288-312 (315)
72 COG4257 Vgb Streptogramin lyas 32.9 69 0.0015 26.6 3.9 50 32-82 50-99 (353)
73 COG5170 CDC55 Serine/threonine 32.8 48 0.001 28.1 3.0 27 49-77 31-59 (460)
74 PF07263 DMP1: Dentin matrix p 32.6 25 0.00053 30.5 1.3 18 1-18 1-18 (514)
75 KOG2048 WD40 repeat protein [G 32.4 44 0.00096 30.0 2.9 27 49-75 159-185 (691)
76 PF06459 RR_TM4-6: Ryanodine R 32.3 19 0.00042 28.3 0.6 21 1-23 173-193 (274)
77 TIGR03300 assembly_YfgL outer 32.0 2.3E+02 0.0049 21.5 8.5 23 50-74 61-83 (377)
78 KOG1188 WD40 repeat protein [G 31.6 27 0.00058 29.2 1.3 25 49-73 321-345 (376)
79 KOG0291 WD40-repeat-containing 31.4 66 0.0014 29.7 3.8 31 48-79 354-384 (893)
80 PF07202 Tcp10_C: T-complex pr 31.3 1.2E+02 0.0027 22.4 4.7 44 35-83 84-127 (179)
81 PF14870 PSII_BNR: Photosynthe 30.9 84 0.0018 24.9 4.0 38 43-81 231-268 (302)
82 KOG1273 WD40 repeat protein [G 29.8 47 0.001 28.0 2.4 25 51-75 160-184 (405)
83 KOG0318 WD40 repeat stress pro 29.6 89 0.0019 27.7 4.2 44 45-88 444-487 (603)
84 KOG0282 mRNA splicing factor [ 29.5 54 0.0012 28.4 2.8 26 47-72 435-460 (503)
85 COG2133 Glucose/sorbosone dehy 29.4 59 0.0013 27.1 3.0 21 45-66 177-197 (399)
86 PF07494 Reg_prop: Two compone 29.4 61 0.0013 16.1 2.0 15 49-64 9-23 (24)
87 PTZ00421 coronin; Provisional 28.8 69 0.0015 26.7 3.3 29 46-74 170-198 (493)
88 COG4067 Uncharacterized protei 28.6 2.2E+02 0.0047 21.4 5.6 59 23-84 16-74 (162)
89 PF11912 DUF3430: Protein of u 28.6 42 0.00091 23.8 1.8 14 1-14 1-14 (212)
90 KOG0319 WD40-repeat-containing 28.0 52 0.0011 29.9 2.6 25 49-73 594-618 (775)
91 PF00780 CNH: CNH domain; Int 28.0 92 0.002 22.4 3.5 29 53-82 4-33 (275)
92 KOG0263 Transcription initiati 27.8 53 0.0011 29.6 2.6 32 44-75 576-608 (707)
93 PF13128 DUF3954: Protein of u 27.8 85 0.0018 19.3 2.8 26 52-78 5-30 (50)
94 COG2133 Glucose/sorbosone dehy 27.4 73 0.0016 26.5 3.2 29 46-75 368-398 (399)
95 PRK10234 DNA-binding transcrip 27.3 79 0.0017 22.2 2.9 28 44-82 48-78 (118)
96 COG3391 Uncharacterized conser 27.0 1.1E+02 0.0023 24.2 4.0 31 46-76 117-150 (381)
97 PF10055 DUF2292: Uncharacteri 26.8 50 0.0011 19.1 1.6 17 59-75 18-34 (38)
98 PF00058 Ldl_recept_b: Low-den 26.8 41 0.00089 18.7 1.2 16 39-54 27-42 (42)
99 KOG0772 Uncharacterized conser 26.8 73 0.0016 28.3 3.2 45 30-74 153-197 (641)
100 PF01011 PQQ: PQQ enzyme repea 26.5 59 0.0013 17.4 1.8 17 59-75 3-19 (38)
101 PF03032 Brevenin: Brevenin/es 26.2 45 0.00097 19.9 1.3 16 1-16 3-18 (46)
102 PF13619 KTSC: KTSC domain 25.5 1.2E+02 0.0026 18.0 3.2 34 48-81 7-41 (60)
103 PF02239 Cytochrom_D1: Cytochr 25.3 1.4E+02 0.0031 23.7 4.4 40 35-76 29-68 (369)
104 KOG1963 WD40 repeat protein [G 25.1 70 0.0015 29.2 2.9 30 48-77 255-284 (792)
105 PF14435 SUKH-4: SUKH-4 immuni 24.5 1.4E+02 0.0031 20.6 3.8 36 50-85 78-115 (179)
106 PF03736 EPTP: EPTP domain; I 24.5 1.4E+02 0.003 16.6 3.9 28 45-73 12-44 (44)
107 PF14655 RAB3GAP2_N: Rab3 GTPa 24.3 98 0.0021 25.8 3.4 26 47-74 310-337 (415)
108 KOG0293 WD40 repeat-containing 24.0 79 0.0017 27.4 2.8 32 45-76 313-344 (519)
109 KOG2055 WD40 repeat protein [G 23.7 87 0.0019 27.3 3.0 37 36-75 339-375 (514)
110 PF14382 ECR1_N: Exosome compl 23.7 37 0.0008 19.3 0.6 28 39-70 2-29 (39)
111 KOG0646 WD40 repeat protein [G 23.6 73 0.0016 27.5 2.6 24 50-73 129-152 (476)
112 TIGR02658 TTQ_MADH_Hv methylam 23.1 1.9E+02 0.0041 23.4 4.8 37 35-74 292-330 (352)
113 KOG0642 Cell-cycle nuclear pro 23.1 52 0.0011 29.0 1.7 31 45-75 532-562 (577)
114 PF06923 GutM: Glucitol operon 22.8 1.2E+02 0.0026 20.6 3.1 27 45-82 48-77 (109)
115 PF09680 Tiny_TM_bacill: Prote 22.8 59 0.0013 17.3 1.2 13 4-16 6-18 (24)
116 PF12930 DUF3836: Family of un 22.6 1.1E+02 0.0025 21.5 3.1 28 50-82 66-93 (132)
117 PF11725 AvrE: Pathogenicity f 22.6 46 0.00099 32.9 1.3 29 49-80 609-637 (1774)
118 PF14567 SUKH_5: SMI1-KNR4 cel 22.1 31 0.00067 24.5 0.1 28 48-75 86-113 (132)
119 PF01403 Sema: Sema domain; I 22.0 84 0.0018 25.1 2.5 23 48-70 367-395 (433)
120 PF14870 PSII_BNR: Photosynthe 21.9 2.6E+02 0.0056 22.1 5.2 50 31-82 4-53 (302)
121 KOG0286 G-protein beta subunit 21.8 1.6E+02 0.0035 24.4 4.1 33 41-73 270-302 (343)
122 COG3391 Uncharacterized conser 21.6 1.5E+02 0.0033 23.4 3.9 30 46-75 161-191 (381)
123 COG1520 FOG: WD40-like repeat 21.5 1E+02 0.0022 23.7 2.8 25 51-76 64-88 (370)
124 KOG0272 U4/U6 small nuclear ri 21.5 76 0.0016 27.3 2.3 28 48-75 349-376 (459)
125 PLN00181 protein SPA1-RELATED; 21.5 1.1E+02 0.0025 26.1 3.4 28 47-74 711-738 (793)
126 COG2075 RPL24A Ribosomal prote 21.4 1E+02 0.0023 19.9 2.4 18 55-72 15-32 (66)
127 KOG0275 Conserved WD40 repeat- 21.4 77 0.0017 27.0 2.3 38 35-73 205-242 (508)
128 TIGR02726 phenyl_P_delta pheny 21.4 1.2E+02 0.0026 21.7 3.0 29 47-81 7-35 (169)
129 KOG0266 WD40 repeat-containing 21.3 1.1E+02 0.0024 24.6 3.2 30 46-75 290-319 (456)
130 PF04970 LRAT: Lecithin retino 21.2 89 0.0019 20.7 2.2 17 57-75 23-39 (125)
131 smart00284 OLF Olfactomedin-li 21.1 1.6E+02 0.0035 23.0 3.9 29 49-77 132-164 (255)
132 KOG1963 WD40 repeat protein [G 21.0 74 0.0016 29.1 2.2 27 49-75 210-236 (792)
133 PF07542 ATP12: ATP12 chaperon 21.0 74 0.0016 22.0 1.8 17 54-71 11-27 (122)
134 KOG4378 Nuclear protein COP1 [ 21.0 88 0.0019 27.9 2.6 27 48-74 254-280 (673)
135 cd08523 Reeler_cohesin_like Do 20.9 1.1E+02 0.0023 21.6 2.6 17 61-77 105-121 (124)
136 KOG0641 WD40 repeat protein [G 20.4 1.7E+02 0.0037 23.9 4.0 41 30-71 18-58 (350)
137 PF13511 DUF4124: Domain of un 20.3 1.2E+02 0.0026 17.5 2.4 21 65-86 12-32 (60)
138 KOG0271 Notchless-like WD40 re 20.2 1E+02 0.0022 26.5 2.8 26 49-74 162-187 (480)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.32 E-value=3.8e-12 Score=103.08 Aligned_cols=47 Identities=53% Similarity=0.962 Sum_probs=43.8
Q ss_pred CCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEEEC--CCCC
Q 035894 42 AGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFAST--TPFR 88 (88)
Q Consensus 42 ~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~T--s~~r 88 (88)
..+.|||+++||+.|+|||+|++||||++|.+...||++||++ |+||
T Consensus 51 ~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~ 99 (376)
T KOG1520|consen 51 NHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNR 99 (376)
T ss_pred cccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccc
Confidence 4589999999999999999999999999999988899999999 7765
No 2
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.28 E-value=0.18 Score=38.96 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=33.6
Q ss_pred cCCceEEeccCCCcceEEeecc----------------eEEEEeCCCC--CeEEEEECCC
Q 035894 45 VGPESLAFDCNGKGPYAGVSDG----------------RILKWQDSKL--GWTEFASTTP 86 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DG----------------RIlR~~~~~~--gw~~FA~Ts~ 86 (88)
.|.|++|+.++|+.+|+.+... ||++++.... .|.+|+|..+
T Consensus 147 ~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld 206 (326)
T PF13449_consen 147 RGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLD 206 (326)
T ss_pred CCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCC
Confidence 6999999999999899986554 7889987643 4888887643
No 3
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.96 E-value=0.36 Score=37.62 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=34.5
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEe------------ecc-eEEEEeC---CCC--CeEEEEEC
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGV------------SDG-RILKWQD---SKL--GWTEFAST 84 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv------------~DG-RIlR~~~---~~~--gw~~FA~T 84 (88)
++.+.-+..+.-|+.||+|++|+ +|.+- ..| ||++++. ++. .++.||..
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~ 70 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE 70 (367)
T ss_pred EEEEECCCccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC
Confidence 34444333578999999999999 99985 345 9999975 222 36777753
No 4
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=91.74 E-value=0.33 Score=25.33 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.8
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEe
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQ 72 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~ 72 (88)
..-.++++.+++.-+.||..||.|.-|+
T Consensus 12 ~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567899999999899999999999885
No 5
>PRK13684 Ycf48-like protein; Provisional
Probab=91.60 E-value=1.3 Score=34.54 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=34.2
Q ss_pred ceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEE
Q 035894 34 HHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEF 81 (88)
Q Consensus 34 ~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~F 81 (88)
..++..+|. ..-.-+|+|..+.+|.+.| ++|.|+|=...++.|+..
T Consensus 36 ~W~~~~~~~-~~~l~~v~F~d~~~g~avG-~~G~il~T~DgG~tW~~~ 81 (334)
T PRK13684 36 PWQVIDLPT-EANLLDIAFTDPNHGWLVG-SNRTLLETNDGGETWEER 81 (334)
T ss_pred CcEEEecCC-CCceEEEEEeCCCcEEEEE-CCCEEEEEcCCCCCceEC
Confidence 356666654 3567889999888866666 689999987777789864
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.10 E-value=0.46 Score=34.09 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=26.6
Q ss_pred CceEEeccCCCcceEEe-ecceEEEEeCCCCCeE
Q 035894 47 PESLAFDCNGKGPYAGV-SDGRILKWQDSKLGWT 79 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv-~DGRIlR~~~~~~gw~ 79 (88)
|..+++|++|+ +|.+. ..|+|++++++++-..
T Consensus 186 pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 186 PDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLR 218 (246)
T ss_dssp EEEEEEBTTS--EEEEEETTTEEEEEETTSCEEE
T ss_pred CCcceEcCCCC-EEEEEcCCCEEEEECCCccEEE
Confidence 99999999999 99986 4899999999875333
No 7
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.87 E-value=0.47 Score=36.96 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=32.2
Q ss_pred cCCceEEeccCCCcceEEeec--------------------ceEEEEeCCCCCeEEEEEC
Q 035894 45 VGPESLAFDCNGKGPYAGVSD--------------------GRILKWQDSKLGWTEFAST 84 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~D--------------------GRIlR~~~~~~gw~~FA~T 84 (88)
.+|-.+++++||. +|....+ |+|+|+++++...+.+|.-
T Consensus 124 ~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G 182 (367)
T TIGR02604 124 HSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG 182 (367)
T ss_pred ccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC
Confidence 5688999999999 9986662 7899999998778877643
No 8
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=86.90 E-value=0.89 Score=23.73 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=18.0
Q ss_pred cCCceEEeccCCCcceEEee-cceEEE
Q 035894 45 VGPESLAFDCNGKGPYAGVS-DGRILK 70 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~-DGRIlR 70 (88)
..|.++|+|++|+ +|..-. ..||.+
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEE
Confidence 4689999999998 887643 445544
No 9
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.65 E-value=5.2 Score=29.01 Aligned_cols=64 Identities=27% Similarity=0.342 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHhcCCccccCCCCCC-----cccCCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeC
Q 035894 4 SLLIIFFFLALTLSPSFGLPSNAGG-----SRKGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
.+|+|++|+.|.+ |.+.++..+ +.++.....+++- .|||.+..-..|++--+-=-||.=+|...
T Consensus 17 v~LiI~sf~~i~~---f~~a~~~kG~~A~i~v~Gk~~r~i~l~---Kg~~t~~v~~~~g~~n~vev~g~~IRV~e 85 (132)
T COG5341 17 VMLIILSFLPILL---FSLAKAKKGAVAEISVDGKVIRTIPLT---KGNETFDVKENGGFYNKVEVKGNRIRVVE 85 (132)
T ss_pred hHHHHHHHHHHHh---heeeeccCCcEEEEEECCEEEEEEEcc---cCCccEEEEcCCCceEEEEEcCCEEEEEe
Confidence 5788999998877 555533222 3333335567773 79999998887773332333444445443
No 10
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=82.59 E-value=2.1 Score=32.87 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=21.2
Q ss_pred eeEeeCCCC-------ccCCceEEeccCCCcceEEeecceEEEE
Q 035894 35 HLKLQLPAG-------VVGPESLAFDCNGKGPYAGVSDGRILKW 71 (88)
Q Consensus 35 ~~~l~l~~~-------v~GPESiAfD~~G~GpYTGv~DGRIlR~ 71 (88)
...+.|..+ +..||-||||++|. +|-...-.+-+|+
T Consensus 205 ~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 205 VSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 445556543 34599999999998 9987766655554
No 11
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.05 E-value=2.2 Score=33.08 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.5
Q ss_pred CCceEEeccCCCcceEEeecceEEEEeCCCC
Q 035894 46 GPESLAFDCNGKGPYAGVSDGRILKWQDSKL 76 (88)
Q Consensus 46 GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~ 76 (88)
-|-+|||.|||+ +|..-..|+|+++..++.
T Consensus 3 ~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~ 32 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVAERSGRIWVVDKDGS 32 (331)
T ss_dssp SEEEEEEETTSC-EEEEETTTEEEEEETTTE
T ss_pred CceEEEEeCCCc-EEEEeCCceEEEEeCCCc
Confidence 478999999999 999999999999996553
No 12
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=81.88 E-value=2.7 Score=29.16 Aligned_cols=31 Identities=13% Similarity=-0.069 Sum_probs=26.7
Q ss_pred cCCceEEeccCCCcceEEe-ecceEEEEeCCC
Q 035894 45 VGPESLAFDCNGKGPYAGV-SDGRILKWQDSK 75 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv-~DGRIlR~~~~~ 75 (88)
..|.+++|+++|+-+|++. .+|.|..|+...
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4799999999999899875 589999999865
No 13
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=81.47 E-value=1.5 Score=31.42 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=17.8
Q ss_pred CceEEecc-CCCcceEE-eecceEEEEeCCCC
Q 035894 47 PESLAFDC-NGKGPYAG-VSDGRILKWQDSKL 76 (88)
Q Consensus 47 PESiAfD~-~G~GpYTG-v~DGRIlR~~~~~~ 76 (88)
||+.++|+ +|. +|-. ...|+|+||++++.
T Consensus 2 ~Egp~~d~~~g~-l~~~D~~~~~i~~~~~~~~ 32 (246)
T PF08450_consen 2 GEGPVWDPRDGR-LYWVDIPGGRIYRVDPDTG 32 (246)
T ss_dssp EEEEEEETTTTE-EEEEETTTTEEEEEETTTT
T ss_pred CcceEEECCCCE-EEEEEcCCCEEEEEECCCC
Confidence 57777776 444 5443 45677777776553
No 14
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.07 E-value=1.2 Score=34.53 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred CceEEeccCCCcceEEee-cceEEE
Q 035894 47 PESLAFDCNGKGPYAGVS-DGRILK 70 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~-DGRIlR 70 (88)
|-+|++++||. +|-... +|+|+|
T Consensus 308 ~~~v~~~pDG~-Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 308 PRDVAQGPDGA-LYVSDDSDGKIYR 331 (331)
T ss_dssp EEEEEEETTSE-EEEEE-TTTTEEE
T ss_pred ceEEEEcCCCe-EEEEECCCCeEeC
Confidence 78999999999 999877 999998
No 15
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=77.09 E-value=7.6 Score=20.13 Aligned_cols=33 Identities=21% Similarity=0.075 Sum_probs=24.3
Q ss_pred CccCCceEEeccCCCcce-EEeecceEEEEeCCC
Q 035894 43 GVVGPESLAFDCNGKGPY-AGVSDGRILKWQDSK 75 (88)
Q Consensus 43 ~v~GPESiAfD~~G~GpY-TGv~DGRIlR~~~~~ 75 (88)
++.-|+.+|+|+.++-+| +=..-+.|.|.+-++
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 567899999999987677 445556677665554
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.30 E-value=6.3 Score=29.28 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=25.3
Q ss_pred cCCceEEeccCCCcceEEee-cceEEEEeCC
Q 035894 45 VGPESLAFDCNGKGPYAGVS-DGRILKWQDS 74 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~-DGRIlR~~~~ 74 (88)
.||.+++|+++|+=+|.... +++|..|+-+
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 69999999999998888876 8888777653
No 17
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=75.19 E-value=5.5 Score=17.75 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=19.4
Q ss_pred CceEEeccCCCcceEEeecceEEEEe
Q 035894 47 PESLAFDCNGKGPYAGVSDGRILKWQ 72 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~DGRIlR~~ 72 (88)
--++.+.+++.-..+|..||.|.-|+
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35677777776678888899887663
No 18
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.13 E-value=6 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.8
Q ss_pred CceEEeccCCCcceEEeecc
Q 035894 47 PESLAFDCNGKGPYAGVSDG 66 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~DG 66 (88)
=-.|+|++||. +|-++.|+
T Consensus 148 GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 148 GGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred CceEEECCCCc-EEEEECCC
Confidence 45789999999 99987775
No 19
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.99 E-value=5.6 Score=21.54 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=17.0
Q ss_pred eEEeccCCCcceEEeecceEEEEeCC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
+.+++ +|. +|.|..||+++.++.+
T Consensus 16 ~~~v~-~g~-vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVA-GGR-VYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EEC-TSE-EEEE-TTSEEEEEETT
T ss_pred CCEEE-CCE-EEEEcCCCEEEEEeCC
Confidence 44664 566 9999999999998854
No 20
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=72.16 E-value=9.6 Score=26.39 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=25.1
Q ss_pred cCCceEEeccCCCcce-EEeecceEEEEeCCC
Q 035894 45 VGPESLAFDCNGKGPY-AGVSDGRILKWQDSK 75 (88)
Q Consensus 45 ~GPESiAfD~~G~GpY-TGv~DGRIlR~~~~~ 75 (88)
.+|-+++++++|+-+| ++..|++|..|+...
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 4688899999998777 456789999998754
No 21
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=71.96 E-value=18 Score=30.39 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCccCCceEEeccCCCcceEEee-cceEEEEeCCC
Q 035894 42 AGVVGPESLAFDCNGKGPYAGVS-DGRILKWQDSK 75 (88)
Q Consensus 42 ~~v~GPESiAfD~~G~GpYTGv~-DGRIlR~~~~~ 75 (88)
.++.-|-+|+|.+||+ +|..-. .|||++++..+
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPET 60 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCC
Confidence 3578999999999998 888887 59999998654
No 22
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=71.37 E-value=5.9 Score=31.16 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=26.0
Q ss_pred cCCceEEeccCCCcce-EEeecc-eEEEEeCCCC
Q 035894 45 VGPESLAFDCNGKGPY-AGVSDG-RILKWQDSKL 76 (88)
Q Consensus 45 ~GPESiAfD~~G~GpY-TGv~DG-RIlR~~~~~~ 76 (88)
-.|..+++|.+|. +| .++.+| +|.+|+++++
T Consensus 213 G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 213 GLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred CCCCceEEeCCCC-EEEecccCCceEEEECCCCc
Confidence 4799999999999 99 555555 9999999964
No 23
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.06 E-value=10 Score=25.15 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=12.2
Q ss_pred EeecceEEEEeCCCCCeEE
Q 035894 62 GVSDGRILKWQDSKLGWTE 80 (88)
Q Consensus 62 Gv~DGRIlR~~~~~~gw~~ 80 (88)
+-.+||++||++..+..+.
T Consensus 33 ~~~~GRll~ydp~t~~~~v 51 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTV 51 (89)
T ss_dssp T---EEEEEEETTTTEEEE
T ss_pred CCCCcCEEEEECCCCeEEE
Confidence 3567999999997755544
No 24
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=70.61 E-value=12 Score=27.89 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=24.2
Q ss_pred cCCceEEeccCCCcceEEe-ecceEEEEeCC
Q 035894 45 VGPESLAFDCNGKGPYAGV-SDGRILKWQDS 74 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv-~DGRIlR~~~~ 74 (88)
-+|..++++++|+-+|.+. .+++|.-|+-+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 4799999999999899875 58888666544
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=70.57 E-value=4.7 Score=26.39 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=24.3
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEe
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQ 72 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~ 72 (88)
....+++++++|.-++++..||.|.-|+
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 4578899999988899999999998874
No 26
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=67.79 E-value=3.9 Score=31.64 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=19.8
Q ss_pred ceEEeccCCCcceEEeecceEEEEeCCCC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQDSKL 76 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~~~~ 76 (88)
.+|++|+.|. +|+-..||++.|+.+...
T Consensus 84 ~~i~~d~~G~-LYaV~~~G~lyR~~~~~~ 111 (229)
T PF14517_consen 84 KFIFFDPTGV-LYAVTPDGKLYRHPRPTN 111 (229)
T ss_dssp SEEEE-TTS--EEEEETT-EEEEES---S
T ss_pred eEEEecCCcc-EEEeccccceeeccCCCc
Confidence 4899999999 999999999999876433
No 27
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.57 E-value=14 Score=18.55 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=17.3
Q ss_pred cCCCcceEEeecceEEEEeCC
Q 035894 54 CNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 54 ~~G~GpYTGv~DGRIlR~~~~ 74 (88)
.+|. +|++..||+|+-++.+
T Consensus 5 ~~~~-v~~~~~~g~l~a~d~~ 24 (33)
T smart00564 5 SDGT-VYVGSTDGTLYALDAK 24 (33)
T ss_pred ECCE-EEEEcCCCEEEEEEcc
Confidence 4666 9999999999999984
No 28
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=66.26 E-value=12 Score=31.54 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=31.8
Q ss_pred ccCCceEEeccCCCcceEEee--------------------cceEEEEeCCCC-------CeEEEEEC
Q 035894 44 VVGPESLAFDCNGKGPYAGVS--------------------DGRILKWQDSKL-------GWTEFAST 84 (88)
Q Consensus 44 v~GPESiAfD~~G~GpYTGv~--------------------DGRIlR~~~~~~-------gw~~FA~T 84 (88)
..-||.+++++...-+|.... .|+|+||.+++. .|+.|...
T Consensus 349 f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~ 416 (524)
T PF05787_consen 349 FDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVG 416 (524)
T ss_pred ccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEe
Confidence 457999999998666998753 367999998766 68887653
No 29
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=65.11 E-value=4.1 Score=33.27 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=27.3
Q ss_pred ceEEeccCCCcceEEeecceEEEEeC-CCCCeEEEE
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQD-SKLGWTEFA 82 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~-~~~gw~~FA 82 (88)
.+|+|.|-=+=.+||-+||-|.+|++ ..++-.+|+
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchhhhhhcc
Confidence 57899888444999999999999998 444555554
No 30
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=62.27 E-value=13 Score=29.34 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=27.4
Q ss_pred CccCCceEEeccCCCcceEEeec-ceEEEEeCC
Q 035894 43 GVVGPESLAFDCNGKGPYAGVSD-GRILKWQDS 74 (88)
Q Consensus 43 ~v~GPESiAfD~~G~GpYTGv~D-GRIlR~~~~ 74 (88)
.+..|..|||++||+-+|..-.. +||.|++-+
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 47899999999999779988766 999998665
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=61.84 E-value=8.5 Score=33.78 Aligned_cols=28 Identities=32% Similarity=0.601 Sum_probs=24.6
Q ss_pred CCceEEeccCCCcceEEeecceEEEEeC
Q 035894 46 GPESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 46 GPESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
+=-++++.++|.=+|+|..||+|..|+-
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 4457888999988999999999999985
No 32
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=60.90 E-value=9.2 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.4
Q ss_pred CceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 47 PESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
=+.|.||..|+-+|||-.+||++-++.+.
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~ 56 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREK 56 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeeccc
Confidence 35688999999999999999999998754
No 33
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.27 E-value=15 Score=27.28 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=29.9
Q ss_pred ceEEeccCCCcceEEeecceEEEEeCCCCCeEEEEE
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFAS 83 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~ 83 (88)
-++.++.+|. |+..+++|..+.|+.+=..|...+.
T Consensus 70 ~~~~lt~~G~-PiV~lsng~~y~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 70 TSCSLTSNGV-PIVTLSNGDSYSYSPDLGCWIRVSD 104 (219)
T ss_pred EEEEEcCCCC-EEEEEeCCCEEEeccccceeEEecc
Confidence 4567888999 9999999999999998878998543
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=59.72 E-value=17 Score=23.73 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.2
Q ss_pred CceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 47 PESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
-.+++++++|+-+++|..||.|.-|+-+.
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~ 40 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLET 40 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeC
Confidence 35788999988789999999999998754
No 35
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=57.90 E-value=24 Score=29.18 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=42.0
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEEECCCC
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPF 87 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~Ts~~ 87 (88)
.+..+||+.--=|||+-+|.+|+.=..=..-|-|.|+++....+++|--.+||
T Consensus 266 W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 266 WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCC
Confidence 55678987666799999999999444467789999999988888887655554
No 36
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=56.94 E-value=22 Score=19.80 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=15.7
Q ss_pred cCCceEEeccCCCcce-EEeecc
Q 035894 45 VGPESLAFDCNGKGPY-AGVSDG 66 (88)
Q Consensus 45 ~GPESiAfD~~G~GpY-TGv~DG 66 (88)
.=|-+||+|++|. .| ||..+|
T Consensus 13 ~~~~~IavD~~GN-iYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGN-IYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCC-EEEEEeecC
Confidence 3478899999999 66 555554
No 37
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=56.64 E-value=16 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=29.7
Q ss_pred CCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeC
Q 035894 32 GNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 32 ~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
....+.+.+..+..||+..+.|..-- .|||-.+|+|.+.+.
T Consensus 53 ~~g~E~~~fd~~~~gp~~~v~dg~il-~~~g~~~Gwv~~~~~ 93 (376)
T KOG1520|consen 53 LTGPESLLFDPQGGGPYTGVVDGRIL-KYTGNDDGWVKFADT 93 (376)
T ss_pred cCChhhheecccCCCceEEEECCceE-EEeccCceEEEEEec
Confidence 33456677765556777777655444 899999999999876
No 38
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=55.28 E-value=25 Score=32.09 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.4
Q ss_pred cCCceEEeccCCCcceEE-eecceEEEEeCCCCCeEEEE
Q 035894 45 VGPESLAFDCNGKGPYAG-VSDGRILKWQDSKLGWTEFA 82 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTG-v~DGRIlR~~~~~~gw~~FA 82 (88)
..|..+++|++|+ +|.. ..++||.+|+.++....+++
T Consensus 804 ~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 804 QHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred cCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEe
Confidence 4699999999999 7776 45789999998664445444
No 39
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=54.18 E-value=19 Score=27.80 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCceEEeccCCCcceEEeecc-------eEEEEeCCCC
Q 035894 46 GPESLAFDCNGKGPYAGVSDG-------RILKWQDSKL 76 (88)
Q Consensus 46 GPESiAfD~~G~GpYTGv~DG-------RIlR~~~~~~ 76 (88)
=||+|+++++|. .|-+..-+ +|++++.+++
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~ 122 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGR 122 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCc
Confidence 799999977777 88887766 8999998754
No 40
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=53.93 E-value=17 Score=31.20 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=28.3
Q ss_pred EeeCCCCccCCceEEeccCCCcceEEeecceEEEEeC
Q 035894 37 KLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 37 ~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
.+.+| .-+-++|.||.++..|.|.+||.|+-.+-
T Consensus 213 ti~fp---~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 213 TITFP---SSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred EEecC---CcceeEEEcccccEEEecCCcceEEeeeh
Confidence 45565 46889999999999999999999987543
No 41
>PRK02888 nitrous-oxide reductase; Validated
Probab=53.83 E-value=22 Score=31.39 Aligned_cols=36 Identities=33% Similarity=0.626 Sum_probs=29.6
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEe-ecceEEEEeCC
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGV-SDGRILKWQDS 74 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv-~DGRIlR~~~~ 74 (88)
+.++++ | .||=..+||.+|. .||.+ .|-.|+||+-+
T Consensus 368 vaevev-G--lGPLHTaFDg~G~-aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 368 VAEPEL-G--LGPLHTAFDGRGN-AYTTLFLDSQIVKWNIE 404 (635)
T ss_pred EEeecc-C--CCcceEEECCCCC-EEEeEeecceeEEEehH
Confidence 445666 2 6999999999998 99985 69999999864
No 42
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=53.37 E-value=15 Score=35.16 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=20.3
Q ss_pred eEEeccCCCcceEEeecceEEEEeCCC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
+-..+..|- .|||.+|++|.+|+...
T Consensus 1310 ~~~~~~~~~-~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1310 CGVCEKNGF-LLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred eecccCCce-eeecCCccceeeccCCC
Confidence 334456666 99999999999999853
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=53.06 E-value=22 Score=29.91 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.0
Q ss_pred EeccCCCcceEEeecceEEEEeCCCCCeEEEEEC
Q 035894 51 AFDCNGKGPYAGVSDGRILKWQDSKLGWTEFAST 84 (88)
Q Consensus 51 AfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~T 84 (88)
-|-|+|+-+.||+.||.|+.|++.. +...|-.+
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~ 229 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKIT 229 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCC-CceeEEec
Confidence 4788999999999999999999854 44555444
No 44
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=53.05 E-value=26 Score=30.97 Aligned_cols=42 Identities=21% Similarity=0.458 Sum_probs=31.7
Q ss_pred ccCCceEEeccCCCcceEEeec-----------------ceEEEEeCCCC-------CeEEEEECC
Q 035894 44 VVGPESLAFDCNGKGPYAGVSD-----------------GRILKWQDSKL-------GWTEFASTT 85 (88)
Q Consensus 44 v~GPESiAfD~~G~GpYTGv~D-----------------GRIlR~~~~~~-------gw~~FA~Ts 85 (88)
..=||.|++.+.-.-.|-.+.+ |+|+||-+... .|+.|+...
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG 481 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAG 481 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecC
Confidence 3569999998885447877655 46999998776 799998654
No 45
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=51.13 E-value=97 Score=25.35 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=34.1
Q ss_pred ccCCceeEeeCCCCccCC----ceEEe--ccCCCcceEEeecceEEEEeCCCCCeEEE
Q 035894 30 RKGNHHLKLQLPAGVVGP----ESLAF--DCNGKGPYAGVSDGRILKWQDSKLGWTEF 81 (88)
Q Consensus 30 ~~~~~~~~l~l~~~v~GP----ESiAf--D~~G~GpYTGv~DGRIlR~~~~~~gw~~F 81 (88)
......+++..|- +| -+|+| +.+.+ -+.--++|.|++-+..++.|+..
T Consensus 72 d~G~~W~q~~~p~---~~~~~L~~V~F~~~d~~~-GwAVG~~G~IL~T~DGG~tW~~~ 125 (398)
T PLN00033 72 EQSSEWEQVDLPI---DPGVVLLDIAFVPDDPTH-GFLLGTRQTLLETKDGGKTWVPR 125 (398)
T ss_pred cCCCccEEeecCC---CCCCceEEEEeccCCCCE-EEEEcCCCEEEEEcCCCCCceEC
Confidence 4555678888773 44 57888 44445 45656699999988778889974
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=50.91 E-value=16 Score=29.89 Aligned_cols=30 Identities=43% Similarity=0.823 Sum_probs=24.4
Q ss_pred CccCCc-eEEeccCCCcceE-EeecceEEEEeC
Q 035894 43 GVVGPE-SLAFDCNGKGPYA-GVSDGRILKWQD 73 (88)
Q Consensus 43 ~v~GPE-SiAfD~~G~GpYT-Gv~DGRIlR~~~ 73 (88)
+-.||- .+-|.|+|+ .|+ |..||.|.-|+-
T Consensus 265 gh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQT 296 (334)
T ss_pred CCCCceEEEEECCCCc-eeeccCCCceEEEEEe
Confidence 456886 468999999 886 788999999975
No 47
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=49.41 E-value=19 Score=27.90 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=25.5
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeC
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
.+.|... +....+.+-+|++|. +|+=..|||++|+.+
T Consensus 121 ~~~iG~~-GW~~f~~vfa~~~Gv-LY~i~~dg~~~~~~~ 157 (229)
T PF14517_consen 121 GKKIGGT-GWNDFDAVFAGPNGV-LYAITPDGRLYRRYR 157 (229)
T ss_dssp SEEEE-S-SGGGEEEEEE-TTS--EEEEETTE-EEEE--
T ss_pred ceecccC-CCccceEEEeCCCcc-EEEEcCCCceEEeCC
Confidence 4455442 466799999999999 999999999999844
No 48
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=49.22 E-value=35 Score=20.80 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=20.6
Q ss_pred ceEEeccCCCcceEE-------eecceEEEEeCCCC
Q 035894 48 ESLAFDCNGKGPYAG-------VSDGRILKWQDSKL 76 (88)
Q Consensus 48 ESiAfD~~G~GpYTG-------v~DGRIlR~~~~~~ 76 (88)
.++++.+||+=+-.| -.|..|+|++.++.
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 368888999844444 23667999998875
No 49
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=48.67 E-value=48 Score=30.32 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=26.6
Q ss_pred ccCCceEEeccCCCcceEEee-cceEEEEeCCCCC
Q 035894 44 VVGPESLAFDCNGKGPYAGVS-DGRILKWQDSKLG 77 (88)
Q Consensus 44 v~GPESiAfD~~G~GpYTGv~-DGRIlR~~~~~~g 77 (88)
...|..||++++|+-+|..-. +++|.+|+.+..+
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 357999999999876886654 5899999876433
No 50
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=48.00 E-value=44 Score=27.30 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=35.3
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEE
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEF 81 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~F 81 (88)
++.+..+....+.-+++|.+++. .|..-.+|.|++....++.|+.-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRSTDGGKSWKRD 363 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeCCCCcceeEc
Confidence 34444432335678899999988 89999999999998888889874
No 51
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=47.73 E-value=23 Score=20.42 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=14.9
Q ss_pred CCcceEEeecceEEEEeCCC
Q 035894 56 GKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 56 G~GpYTGv~DGRIlR~~~~~ 75 (88)
|=|+...+.||+|+++.++.
T Consensus 14 gC~i~~~v~~g~i~~v~g~~ 33 (55)
T PF04879_consen 14 GCGIDVYVKDGKIVKVEGDP 33 (55)
T ss_dssp --EEEEEEETTEEEEEEE-T
T ss_pred CCcEEEEEecCceEEEECCC
Confidence 44578889999999998864
No 52
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=46.90 E-value=19 Score=30.12 Aligned_cols=36 Identities=33% Similarity=0.665 Sum_probs=31.5
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEE
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEF 81 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~F 81 (88)
+|-..+-|.|.-. ||+...||-|+||.+......+|
T Consensus 218 HgnDGLIFTp~~~-PY~~Gkd~~lLKWKP~~~NTiDF 253 (404)
T COG5226 218 HGNDGLIFTPADE-PYSVGKDGALLKWKPASLNTIDF 253 (404)
T ss_pred CCCCceEeccCCC-CcccCccceeeecCccccCceee
Confidence 6778899999977 99999999999999987776776
No 53
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.62 E-value=15 Score=27.67 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=15.6
Q ss_pred CcceEEeecceEEEEeCCC
Q 035894 57 KGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 57 ~GpYTGv~DGRIlR~~~~~ 75 (88)
.|-|-|-.||||.|++.+.
T Consensus 125 vG~YlGqN~GrV~rI~d~~ 143 (170)
T COG3168 125 VGQYLGQNYGRVVRITDDS 143 (170)
T ss_pred eccEeeccCceEEEecCCe
Confidence 4679999999999987543
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=43.89 E-value=29 Score=29.74 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=23.0
Q ss_pred ceEEeccCCCcceEEeecceEEEEeC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
-+++|+++|+-+.||..||.|..|+-
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~ 512 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFEC 512 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 45899999997889999999999974
No 55
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=42.39 E-value=85 Score=24.06 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=24.2
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEe-ecceEEEEe
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGV-SDGRILKWQ 72 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv-~DGRIlR~~ 72 (88)
++.+...+ ..|.++++|++|+=+|.+- .+++|..|+
T Consensus 284 ~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 284 VQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp EEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 33444432 5799999999999899776 455666543
No 56
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.58 E-value=39 Score=29.90 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.1
Q ss_pred eEEeccCCCcceEEeecceEEEEeCCCCC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQDSKLG 77 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~~~~g 77 (88)
+++|.++|. ..||-++|.|+-|+.....
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 789999999 9999999999999986544
No 57
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=41.12 E-value=17 Score=34.16 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=29.9
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEEE
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFAS 83 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~ 83 (88)
.-||.+.|.. .|+||.++|-|.+-|..++.-...|-|
T Consensus 56 ~p~~nlv~tn--hgl~~~tsdrr~la~~~dgvvqqqfdy 92 (1636)
T KOG3616|consen 56 KPKENLVFTN--HGLVTATSDRRALAWKEDGVVQQQFDY 92 (1636)
T ss_pred CCccceeeec--cceEEEeccchhheeeccCcchhhccc
Confidence 4689999855 568999999999999998866666654
No 58
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=40.73 E-value=25 Score=28.68 Aligned_cols=26 Identities=31% Similarity=0.809 Sum_probs=23.4
Q ss_pred ceEEeccCCCcceEEeecceEEEEeC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
-++.|..+|+=.|||..||.+--|+-
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEec
Confidence 57889999999999999999888875
No 59
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=39.79 E-value=34 Score=30.92 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=31.0
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeE
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWT 79 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~ 79 (88)
.+.|.+|+. -==|..+=++|+ +|+|.+||||.-|.-+..+|.
T Consensus 252 ~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 252 VQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EEEEecCcc--ceEEEEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 566777752 234556667899 999999999999987765553
No 60
>PTZ00421 coronin; Provisional
Probab=39.42 E-value=46 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=23.6
Q ss_pred ceEEecc-CCCcceEEeecceEEEEeCCC
Q 035894 48 ESLAFDC-NGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 48 ESiAfD~-~G~GpYTGv~DGRIlR~~~~~ 75 (88)
-+++|++ +++-+++|..||.|.-|+-..
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4789998 776699999999999998643
No 61
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.37 E-value=40 Score=27.60 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=26.3
Q ss_pred CccCCceEEeccCCCcceEEeecceEEEEeCC
Q 035894 43 GVVGPESLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 43 ~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
.+.+||-||.|.+|. +|-...-+.-+|+.++
T Consensus 282 dipqaEGiamDd~g~-lYIvSEPnlfy~F~~~ 312 (316)
T COG3204 282 DIPQAEGIAMDDDGN-LYIVSEPNLFYRFTPQ 312 (316)
T ss_pred cCCCcceeEECCCCC-EEEEecCCcceecccC
Confidence 567999999999999 9988888877777654
No 62
>PRK13684 Ycf48-like protein; Provisional
Probab=38.31 E-value=51 Score=25.61 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=29.6
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEE
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEF 81 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~F 81 (88)
.+.-++++.++|. .|....+|.|++-...++.|+..
T Consensus 260 ~~l~~v~~~~~~~-~~~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 260 YGYLDLAYRTPGE-IWAGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred cceeeEEEcCCCC-EEEEcCCCeEEEeCCCCCCCeEC
Confidence 4566789999888 89999999999877677889874
No 63
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.28 E-value=28 Score=28.93 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.3
Q ss_pred ceEEeccCCCcceEEeecceEEEEeC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
-++.||.-|+-.-|+.+|++|--|+-
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~ 42 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDS 42 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEec
Confidence 46789999999999999999999983
No 64
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=37.54 E-value=89 Score=24.02 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=27.4
Q ss_pred ceEEeccCCCcce-EEeecceEEEEeCCC----CCeEEEEECC
Q 035894 48 ESLAFDCNGKGPY-AGVSDGRILKWQDSK----LGWTEFASTT 85 (88)
Q Consensus 48 ESiAfD~~G~GpY-TGv~DGRIlR~~~~~----~gw~~FA~Ts 85 (88)
-.++.|++|. +| +=+....|.+|+.++ ......+..+
T Consensus 189 ~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~ 230 (287)
T PF03022_consen 189 DGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDP 230 (287)
T ss_dssp CEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-C
T ss_pred ceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcC
Confidence 4579999998 66 668889999999876 3556665443
No 65
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=35.57 E-value=87 Score=25.94 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=31.4
Q ss_pred cCCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCC
Q 035894 31 KGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 31 ~~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
+...++++.++. -||.+++|..-.-+|-|=.|--||||.-+
T Consensus 197 ~~~lVR~f~~~s---Q~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 197 SATLVREFKVGS---QPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEEEEE-SS----EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred eeEEEEEecCCC---cceEEEEecccCCEEEecCccEEEEEecC
Confidence 334466777764 59999999886669999999999999874
No 66
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=34.96 E-value=73 Score=29.74 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCccccCCCCCCcccCCceeEeeCCCCccCCceEEeccCCCcce-----EEeecceEEEEeCCC
Q 035894 7 IIFFFLALTLSPSFGLPSNAGGSRKGNHHLKLQLPAGVVGPESLAFDCNGKGPY-----AGVSDGRILKWQDSK 75 (88)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~v~GPESiAfD~~G~GpY-----TGv~DGRIlR~~~~~ 75 (88)
+||.||.-.| ||.| .+.+.+..+. ..|+.+|=-=++.|++|. -| +|.++|.+--|-|+|
T Consensus 39 Tl~sFI~sml---FGfP----~~sk~~~~eP--~~Gg~yGG~L~~~~~~~~-~~~IER~kgsa~gdvkvylpdG 102 (984)
T COG4717 39 TLFSFIHSML---FGFP----TSSKYPRLEP--KQGGQYGGRLVAIDREGG-AYRIERNKGSAIGDVKVYLPDG 102 (984)
T ss_pred HHHHHHHHHH---cCCC----CCCCCCCCCc--ccCCCcccEEEEecCCCc-eEEEEeccCcccCCceEECCCC
Confidence 6788888778 9999 4444555553 335668888889999987 55 678888888887776
No 67
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=34.94 E-value=51 Score=25.51 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.2
Q ss_pred EeccCCCcceEEeecceEEEEeCC
Q 035894 51 AFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 51 AfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
.+|+-|=++...+.||||+|+.++
T Consensus 5 ~~~~~GC~i~v~~~~g~i~ri~~~ 28 (375)
T cd02773 5 VLDAVGSNIRVDTRGGEVMRILPR 28 (375)
T ss_pred CCCCCCCceEEEEeCCEEEEEeCC
Confidence 467778888999999999999874
No 68
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=34.62 E-value=30 Score=23.06 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=9.8
Q ss_pred CCcceEEeecceEEE
Q 035894 56 GKGPYAGVSDGRILK 70 (88)
Q Consensus 56 G~GpYTGv~DGRIlR 70 (88)
|.|-++..+||||--
T Consensus 14 ~~GrF~AysDgrVr~ 28 (85)
T PF15016_consen 14 GVGRFTAYSDGRVRV 28 (85)
T ss_pred CceEEEEEcCCeEEE
Confidence 344578888887644
No 69
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=33.88 E-value=66 Score=28.82 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=29.0
Q ss_pred CcccCCceeEeeCCCCccCC----ceEEeccCCCcceEEeecceEEEEeCC
Q 035894 28 GSRKGNHHLKLQLPAGVVGP----ESLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 28 ~~~~~~~~~~l~l~~~v~GP----ESiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
-.+..+.+..++. +..+| .+++.|.||. +.-.+.||. +||++.
T Consensus 21 ~v~~ms~f~vl~~--tsglp~nv~~~~~q~~dGy-lW~at~~G~-vrY~g~ 67 (671)
T COG3292 21 AVPEMSRFRVLDA--TSGLPSNVVRAMLQDADGY-LWLATSDGL-VRYDGP 67 (671)
T ss_pred hcccccceEeeeh--hccCchHHHHHHhhccCCc-EEEEecccE-EEecCC
Confidence 3345555554444 33566 4678999998 999999996 467763
No 70
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=33.73 E-value=45 Score=25.58 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=25.9
Q ss_pred eEeeCCCCccCCceEEeccCCCcceEEe-ecceEEEEeCC
Q 035894 36 LKLQLPAGVVGPESLAFDCNGKGPYAGV-SDGRILKWQDS 74 (88)
Q Consensus 36 ~~l~l~~~v~GPESiAfD~~G~GpYTGv-~DGRIlR~~~~ 74 (88)
..+.+|.+ .||.+++|+++|+-.|.-- .++.|..++-+
T Consensus 184 ~~~~~~~G-~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 184 DSIKVPPG-SGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEECSTT-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eccccccC-CCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 44567644 7999999999998788764 35556555443
No 71
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=33.05 E-value=51 Score=27.03 Aligned_cols=25 Identities=40% Similarity=0.691 Sum_probs=22.3
Q ss_pred eEEeccCCCcceEEeecceEEEEeC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
|+|+..||.-+|.|.+||-|.-|+-
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEe
Confidence 5699999999999999999988863
No 72
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=32.89 E-value=69 Score=26.57 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEE
Q 035894 32 GNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFA 82 (88)
Q Consensus 32 ~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA 82 (88)
....+..++|.+ .+|-++|.++||-.=||+-..|-|=+.++....-+.+.
T Consensus 50 ~~s~~~fpvp~G-~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp 99 (353)
T COG4257 50 DGSSAEFPVPNG-SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP 99 (353)
T ss_pred CCccceeccCCC-CCccccccCCCCceEEecCccccceecCCCCCceEEEe
Confidence 344666788765 79999999999987999999998888887544445443
No 73
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=32.76 E-value=48 Score=28.08 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=19.8
Q ss_pred eEEeccCCCcceEEeec--ceEEEEeCCCCC
Q 035894 49 SLAFDCNGKGPYAGVSD--GRILKWQDSKLG 77 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~D--GRIlR~~~~~~g 77 (88)
++.||.. |.|.|+.| |||+-+......
T Consensus 31 aVefd~t--g~YlatGDkgGRVvlfer~~s~ 59 (460)
T COG5170 31 AVEFDET--GLYLATGDKGGRVVLFEREKSY 59 (460)
T ss_pred EEEeccc--cceEeecCCCceEEEeeccccc
Confidence 4566665 45988888 999999875443
No 74
>PF07263 DMP1: Dentin matrix protein 1 (DMP1); InterPro: IPR009889 This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21 []. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca2+ surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation []. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown [].; GO: 0001503 ossification, 0030198 extracellular matrix organization
Probab=32.63 E-value=25 Score=30.52 Aligned_cols=18 Identities=39% Similarity=0.611 Sum_probs=15.0
Q ss_pred CchhhhHHHHHHHHhcCC
Q 035894 1 MKTSLLIIFFFLALTLSP 18 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (88)
||+++|+||++-|-..||
T Consensus 1 mktsill~~lwgls~alp 18 (514)
T PF07263_consen 1 MKTSILLMFLWGLSCALP 18 (514)
T ss_pred CcceeHHHHHHHhhcccc
Confidence 999999999988866655
No 75
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=32.37 E-value=44 Score=29.98 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.5
Q ss_pred eEEeccCCCcceEEeecceEEEEeCCC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
+++++++|.-+.+|..||+|.-|+...
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCC
Confidence 678889988799999999999998743
No 76
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=32.25 E-value=19 Score=28.35 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=15.3
Q ss_pred CchhhhHHHHHHHHhcCCccccC
Q 035894 1 MKTSLLIIFFFLALTLSPSFGLP 23 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (88)
||+++||+.+.|+|.|| |+=+
T Consensus 173 lr~lALflAFaINFILL--FYKV 193 (274)
T PF06459_consen 173 LRFLALFLAFAINFILL--FYKV 193 (274)
T ss_pred HHHHHHHHHHHHHHHHH--HHHh
Confidence 57889999998887743 5544
No 77
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=32.01 E-value=2.3e+02 Score=21.49 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.7
Q ss_pred EEeccCCCcceEEeecceEEEEeCC
Q 035894 50 LAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 50 iAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
.+++ +|. +|.+..||.|..++..
T Consensus 61 p~v~-~~~-v~v~~~~g~v~a~d~~ 83 (377)
T TIGR03300 61 PAVA-GGK-VYAADADGTVVALDAE 83 (377)
T ss_pred eEEE-CCE-EEEECCCCeEEEEEcc
Confidence 3443 445 9999999999999863
No 78
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=31.61 E-value=27 Score=29.23 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.1
Q ss_pred eEEeccCCCcceEEeecceEEEEeC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
|+-||..+.-.|||-.||++.-|.-
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEec
Confidence 5668888988999999999999983
No 79
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=31.40 E-value=66 Score=29.68 Aligned_cols=31 Identities=29% Similarity=0.622 Sum_probs=25.9
Q ss_pred ceEEeccCCCcceEEeecceEEEEeCCCCCeE
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQDSKLGWT 79 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~ 79 (88)
-+++..|||.-+-||..||+|--|+-.. +++
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC 384 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQS-GFC 384 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccC-ceE
Confidence 4678999999899999999999999643 444
No 80
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=31.33 E-value=1.2e+02 Score=22.41 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=32.4
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEEE
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFAS 83 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~ 83 (88)
...|.+|++.. -.+.++|. =++-..||.+++.+.++....+|.+
T Consensus 84 ~keI~fPDGt~----k~~~~dG~-e~~~fpDGT~~~~~~nG~k~i~~pn 127 (179)
T PF07202_consen 84 SKEIVFPDGTI----KYIHPDGR-EETVFPDGTIVTIDPNGDKTITFPN 127 (179)
T ss_pred CEEEEeCCCcE----EEEeCCCc-EEEECCCceEEEEeCCCcEEEEeCC
Confidence 34566665432 34568888 7999999999999998888888765
No 81
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=30.92 E-value=84 Score=24.87 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=27.2
Q ss_pred CccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEE
Q 035894 43 GVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEF 81 (88)
Q Consensus 43 ~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~F 81 (88)
+-+|==++|++++++ .+++...|.+++-...++.|+.-
T Consensus 231 ~~~~~ld~a~~~~~~-~wa~gg~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 231 NGYGILDLAYRPPNE-IWAVGGSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp --S-EEEEEESSSS--EEEEESTT-EEEESSTTSS-EE-
T ss_pred CceeeEEEEecCCCC-EEEEeCCccEEEeCCCCccceEC
Confidence 345667889999988 99999999999987788889863
No 82
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=29.82 E-value=47 Score=27.97 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.5
Q ss_pred EeccCCCcceEEeecceEEEEeCCC
Q 035894 51 AFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 51 AfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
.||+.|+=+|||++-|+|+-++-+.
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecch
Confidence 4899999999999999999998754
No 83
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=29.55 E-value=89 Score=27.70 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=34.1
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEEECCCCC
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFASTTPFR 88 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~Ts~~r 88 (88)
+-|+.+|+.++|.-.-.|..||+|--|.-.+..-+++|..-++|
T Consensus 444 y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 444 YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 67999999999988889999998776665554457777665554
No 84
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=29.54 E-value=54 Score=28.44 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=23.4
Q ss_pred CceEEeccCCCcceEEeecceEEEEe
Q 035894 47 PESLAFDCNGKGPYAGVSDGRILKWQ 72 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~DGRIlR~~ 72 (88)
+=.+.|.+||+=+.+|-+||++.-|+
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEee
Confidence 45688999999999999999999997
No 85
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=29.42 E-value=59 Score=27.05 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.9
Q ss_pred cCCceEEeccCCCcceEEeecc
Q 035894 45 VGPESLAFDCNGKGPYAGVSDG 66 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DG 66 (88)
+-=-.|+|++||. +|..+.|.
T Consensus 177 H~g~~l~f~pDG~-Lyvs~G~~ 197 (399)
T COG2133 177 HFGGRLVFGPDGK-LYVTTGSN 197 (399)
T ss_pred cCcccEEECCCCc-EEEEeCCC
Confidence 3345799999998 99998776
No 86
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.36 E-value=61 Score=16.14 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=10.7
Q ss_pred eEEeccCCCcceEEee
Q 035894 49 SLAFDCNGKGPYAGVS 64 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~ 64 (88)
+|..|++|+ +..|+.
T Consensus 9 ~i~~D~~G~-lWigT~ 23 (24)
T PF07494_consen 9 SIYEDSDGN-LWIGTY 23 (24)
T ss_dssp EEEE-TTSC-EEEEET
T ss_pred EEEEcCCcC-EEEEeC
Confidence 678888888 877764
No 87
>PTZ00421 coronin; Provisional
Probab=28.83 E-value=69 Score=26.71 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=25.3
Q ss_pred CCceEEeccCCCcceEEeecceEEEEeCC
Q 035894 46 GPESLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 46 GPESiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
.-.+++|.++|.-+.||..||.|.-|+..
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence 34688999999889999999999999874
No 88
>COG4067 Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones]
Probab=28.61 E-value=2.2e+02 Score=21.39 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=35.7
Q ss_pred CCCCCCcccCCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEEEC
Q 035894 23 PSNAGGSRKGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFAST 84 (88)
Q Consensus 23 ~~~~~~~~~~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA~T 84 (88)
++..+.-......+.+-+|+- +=+-=|--..|. .-+.++--.|.++..++..|+.|...
T Consensus 16 ~s~~~~~~v~G~~E~~~l~~l--~~~~kAkiDTGA-~TSsL~A~dI~~fkRdGe~WVRF~~~ 74 (162)
T COG4067 16 TSCAAEKMVLGWIEWVSLPGL--KIQLKAKIDTGA-VTSSLSASDIERFKRDGERWVRFRLA 74 (162)
T ss_pred ccccccceEeeeEEEEEcCcc--cceeeeeecccc-eeeeEEeecceeeeeCCceEEEEEee
Confidence 344444445555677778742 222113222333 44456677899999999999999754
No 89
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=28.56 E-value=42 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=8.1
Q ss_pred CchhhhHHHHHHHH
Q 035894 1 MKTSLLIIFFFLAL 14 (88)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (88)
||++.++|++.+++
T Consensus 1 MKll~~lilli~~~ 14 (212)
T PF11912_consen 1 MKLLISLILLILLI 14 (212)
T ss_pred CcHHHHHHHHHHHH
Confidence 89965555544443
No 90
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.02 E-value=52 Score=29.94 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred eEEeccCCCcceEEeecceEEEEeC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
+++..+++.=.|||..||||.+|..
T Consensus 594 aL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 594 ALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEeecCccceeEecCCCeEEEEeec
Confidence 3556666666899999999999975
No 91
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=27.96 E-value=92 Score=22.37 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=20.8
Q ss_pred ccCCCcceEEeecceEEEEeC-CCCCeEEEE
Q 035894 53 DCNGKGPYAGVSDGRILKWQD-SKLGWTEFA 82 (88)
Q Consensus 53 D~~G~GpYTGv~DGRIlR~~~-~~~gw~~FA 82 (88)
+..|+-+|.|+.|| |+.++. +..+|....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~ 33 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL 33 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe
Confidence 45566699999999 888877 455566543
No 92
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=27.82 E-value=53 Score=29.58 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=27.4
Q ss_pred ccCC-ceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 44 VVGP-ESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 44 v~GP-ESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
-.|| ++++|.++|+=+=+|..||+|.-|+-..
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 4577 6789999999888999999999998754
No 93
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=27.80 E-value=85 Score=19.26 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.1
Q ss_pred eccCCCcceEEeecceEEEEeCCCCCe
Q 035894 52 FDCNGKGPYAGVSDGRILKWQDSKLGW 78 (88)
Q Consensus 52 fD~~G~GpYTGv~DGRIlR~~~~~~gw 78 (88)
+|-.-+|+|.- .||.|..++++.+|+
T Consensus 5 Id~~~ngiYiV-~~G~v~~i~pP~sGf 30 (50)
T PF13128_consen 5 IDVKENGIYIV-KDGEVTFIEPPESGF 30 (50)
T ss_pred eeccCCeEEEE-ECCeEEEcCCCCCCc
Confidence 34455678987 999999999987653
No 94
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=27.41 E-value=73 Score=26.52 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCceEEeccCCCcceEE-ee-cceEEEEeCCC
Q 035894 46 GPESLAFDCNGKGPYAG-VS-DGRILKWQDSK 75 (88)
Q Consensus 46 GPESiAfD~~G~GpYTG-v~-DGRIlR~~~~~ 75 (88)
=|-+++.++||- +|-- -. ||+|+|....+
T Consensus 368 R~~dV~v~~DGa-llv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 368 RPRDVAVAPDGA-LLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred cccceEECCCCe-EEEeecCCCCeEEEecCCC
Confidence 388999999998 5544 33 88999987654
No 95
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=27.26 E-value=79 Score=22.16 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=18.3
Q ss_pred ccCCceE---EeccCCCcceEEeecceEEEEeCCCCCeEEEE
Q 035894 44 VVGPESL---AFDCNGKGPYAGVSDGRILKWQDSKLGWTEFA 82 (88)
Q Consensus 44 v~GPESi---AfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA 82 (88)
-..|-.+ |+|++|+ +.|+++++ |++.||
T Consensus 48 rf~~g~IvllaiD~~~~-----I~d~~~M~------G~TVFA 78 (118)
T PRK10234 48 RFKPRVVVALALDEQQR-----VVDTLFMK------GLTVFA 78 (118)
T ss_pred ccCCCeEEEEEECCCCc-----EEeeEEEc------cEEEEe
Confidence 3566665 6777777 56666665 566666
No 96
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=26.97 E-value=1.1e+02 Score=24.18 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCceEEeccCCCcceEEee---cceEEEEeCCCC
Q 035894 46 GPESLAFDCNGKGPYAGVS---DGRILKWQDSKL 76 (88)
Q Consensus 46 GPESiAfD~~G~GpYTGv~---DGRIlR~~~~~~ 76 (88)
.|..+++|++|+-.|..-. +++|..++....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 8999999999977999988 689998887643
No 97
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.81 E-value=50 Score=19.06 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=12.6
Q ss_pred ceEEeecceEEEEeCCC
Q 035894 59 PYAGVSDGRILKWQDSK 75 (88)
Q Consensus 59 pYTGv~DGRIlR~~~~~ 75 (88)
.---++||||+.++..+
T Consensus 18 V~iiiqdG~vvQIe~~E 34 (38)
T PF10055_consen 18 VTIIIQDGRVVQIEKTE 34 (38)
T ss_pred EEEEEECCEEEEEEhhh
Confidence 33457999999998643
No 98
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=26.79 E-value=41 Score=18.72 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.3
Q ss_pred eCCCCccCCceEEecc
Q 035894 39 QLPAGVVGPESLAFDC 54 (88)
Q Consensus 39 ~l~~~v~GPESiAfD~ 54 (88)
.+..++.=|++||+|+
T Consensus 27 vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 27 VISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEESSTSSEEEEEEET
T ss_pred EEECCCCCcCEEEECC
Confidence 3345688999999985
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=26.77 E-value=73 Score=28.30 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=34.7
Q ss_pred ccCCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCC
Q 035894 30 RKGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 30 ~~~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
++.+..+.|.++++..-=-++++|+.|-..|+|..|=.|--|+=.
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~ 197 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQ 197 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecc
Confidence 445566677777655555678999999889999999999888754
No 100
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.49 E-value=59 Score=17.40 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=14.7
Q ss_pred ceEEeecceEEEEeCCC
Q 035894 59 PYAGVSDGRILKWQDSK 75 (88)
Q Consensus 59 pYTGv~DGRIlR~~~~~ 75 (88)
.|.+..||+|+-++.+.
T Consensus 3 v~~~~~~g~l~AlD~~T 19 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKT 19 (38)
T ss_dssp EEEETTTSEEEEEETTT
T ss_pred EEEeCCCCEEEEEECCC
Confidence 78899999999999753
No 101
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=26.19 E-value=45 Score=19.93 Aligned_cols=16 Identities=44% Similarity=0.883 Sum_probs=12.5
Q ss_pred CchhhhHHHHHHHHhc
Q 035894 1 MKTSLLIIFFFLALTL 16 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (88)
||=|+|.+++.-.|||
T Consensus 3 lKKsllLlfflG~ISl 18 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISL 18 (46)
T ss_pred chHHHHHHHHHHHccc
Confidence 5778888888778887
No 102
>PF13619 KTSC: KTSC domain
Probab=25.46 E-value=1.2e+02 Score=18.01 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=26.3
Q ss_pred ceEEeccCCCcceEEeecceEEEEeC-CCCCeEEE
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQD-SKLGWTEF 81 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~-~~~gw~~F 81 (88)
.++..|++.+-++--..+|.+.++.+ +..-|..|
T Consensus 7 ~~v~Yd~~~~~L~V~F~~G~~Y~Y~~Vp~~~~~~l 41 (60)
T PF13619_consen 7 RSVGYDPETRTLEVEFKSGSVYRYFGVPPEVYEAL 41 (60)
T ss_pred cEEeECCCCCEEEEEEcCCCEEEECCCCHHHHHHH
Confidence 46778888888999999999999987 44445544
No 103
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.27 E-value=1.4e+02 Score=23.68 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=28.1
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCC
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKL 76 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~ 76 (88)
..+++..+. . +-+++|.+||+=.|....||.|-.|+....
T Consensus 29 ~~~i~~~~~-~-h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 29 VARIPTGGA-P-HAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEE-STT-E-EEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEcCCCC-c-eeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 455665432 1 567899999998999999999999987543
No 104
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=25.14 E-value=70 Score=29.19 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=26.1
Q ss_pred ceEEeccCCCcceEEeecceEEEEeCCCCC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQDSKLG 77 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~~~~g 77 (88)
-+++|.++|.-+|+|...|-.++|+-+...
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC
Confidence 368999999999999999999999975443
No 105
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=24.55 E-value=1.4e+02 Score=20.63 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=24.1
Q ss_pred EEeccCC-CcceEEe-ecceEEEEeCCCCCeEEEEECC
Q 035894 50 LAFDCNG-KGPYAGV-SDGRILKWQDSKLGWTEFASTT 85 (88)
Q Consensus 50 iAfD~~G-~GpYTGv-~DGRIlR~~~~~~gw~~FA~Ts 85 (88)
+.+..++ .+.+.=- .+|+|+.++.+......|.|+|
T Consensus 78 ~vlG~~~~~~~i~ld~~tG~V~~~~~~~~~~~~~vNss 115 (179)
T PF14435_consen 78 IVLGSDGSGGSICLDPATGAVYALDPDEEPEPVFVNSS 115 (179)
T ss_pred EEEEEcCCCCeEEEECCCCeEEEecCCccccceeccCC
Confidence 4555555 4333333 6999999988764567788876
No 106
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=24.51 E-value=1.4e+02 Score=16.62 Aligned_cols=28 Identities=21% Similarity=0.653 Sum_probs=15.6
Q ss_pred cCCceE-EeccCCCcceEEeec----ceEEEEeC
Q 035894 45 VGPESL-AFDCNGKGPYAGVSD----GRILKWQD 73 (88)
Q Consensus 45 ~GPESi-AfD~~G~GpYTGv~D----GRIlR~~~ 73 (88)
.||-++ .|.-+|+ .|-.+++ -.|+||++
T Consensus 12 ~~~~~~e~F~i~~~-~fl~~a~~~~~s~Iy~Wd~ 44 (44)
T PF03736_consen 12 RGARDVEPFSIGGD-QFLAVASFFGDSQIYRWDG 44 (44)
T ss_pred cceeEEEEEEECCE-EEEEEEeCCCCCEEEEeCC
Confidence 355555 3333444 7766543 46889874
No 107
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=24.26 E-value=98 Score=25.75 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred CceEEeccCCCcceEEeec--ceEEEEeCC
Q 035894 47 PESLAFDCNGKGPYAGVSD--GRILKWQDS 74 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~D--GRIlR~~~~ 74 (88)
=|+|+.+|.|+ |..+.| |||+-+|-.
T Consensus 310 ~~~i~~sP~~~--laA~tDslGRV~LiD~~ 337 (415)
T PF14655_consen 310 GESICLSPSGR--LAAVTDSLGRVLLIDVA 337 (415)
T ss_pred EEEEEECCCCC--EEEEEcCCCcEEEEECC
Confidence 37899999966 777777 899887653
No 108
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.98 E-value=79 Score=27.44 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=28.9
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEeCCCC
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQDSKL 76 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~ 76 (88)
.-+-|.|.-|||.+..||..|+.|+-|+-+++
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn 344 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN 344 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcc
Confidence 56889999999999999999999999988765
No 109
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=23.72 E-value=87 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=29.1
Q ss_pred eEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 36 LKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 36 ~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
..+.++|.+ -+++|++||+-+|..-.+|.|+-|+-..
T Consensus 339 ~s~KieG~v---~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 339 TSFKIEGVV---SDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred heeeeccEE---eeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 345565543 4789999999999999999999998643
No 110
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=23.66 E-value=37 Score=19.34 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=15.9
Q ss_pred eCCCCccCCceEEeccCCCcceEEeecceEEE
Q 035894 39 QLPAGVVGPESLAFDCNGKGPYAGVSDGRILK 70 (88)
Q Consensus 39 ~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR 70 (88)
-+||+..|+++= + -.|.|-|. .||.|+-
T Consensus 2 V~PG~~l~~~~e-~-~~G~GTY~--~~g~I~a 29 (39)
T PF14382_consen 2 VVPGDRLGSSEE-Y-MPGHGTYV--RDGNIYA 29 (39)
T ss_dssp E-TT-EEEETTT-S-EESTTEEE--ETTEEEE
T ss_pred CCCCCEeecCCC-E-ecCCCEEE--eCCEEEE
Confidence 357776666541 1 13677776 7888864
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=23.62 E-value=73 Score=27.48 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEeccCCCcceEEeecceEEEEeC
Q 035894 50 LAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 50 iAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
+.|..||.-++||..||+|+-|.-
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEE
Confidence 468889988999999999999964
No 112
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.14 E-value=1.9e+02 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=26.4
Q ss_pred eeEeeCCCCccCCceEEeccCCC-cceEEe-ecceEEEEeCC
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGK-GPYAGV-SDGRILKWQDS 74 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~-GpYTGv-~DGRIlR~~~~ 74 (88)
..+|++. ..|++++|++||+ =+|+.- .+|.|-.++..
T Consensus 292 i~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 292 LRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 4456663 5999999999999 667655 45667776653
No 113
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=23.13 E-value=52 Score=28.97 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=25.9
Q ss_pred cCCceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 45 VGPESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 45 ~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
.+=-++|+|++|--+-+|-+||||.-|.-+.
T Consensus 532 ~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 532 DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ceecceeecCCCceEEeecCCceeehhhccc
Confidence 3445789999998888999999999998754
No 114
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=22.81 E-value=1.2e+02 Score=20.63 Aligned_cols=27 Identities=41% Similarity=0.690 Sum_probs=15.3
Q ss_pred cCCceE---EeccCCCcceEEeecceEEEEeCCCCCeEEEE
Q 035894 45 VGPESL---AFDCNGKGPYAGVSDGRILKWQDSKLGWTEFA 82 (88)
Q Consensus 45 ~GPESi---AfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA 82 (88)
.+|-++ |+|++|+ +.|+++++ |.+.||
T Consensus 48 f~~g~Ivlla~D~~~~-----I~~~~~M~------G~TVFA 77 (109)
T PF06923_consen 48 FRPGVIVLLAVDEDGR-----IVDAEIMK------GITVFA 77 (109)
T ss_pred ccCCeEEEEEECCCCc-----EEEEEEEe------ceEEEE
Confidence 456555 6676666 45555554 455555
No 115
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.78 E-value=59 Score=17.33 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHhc
Q 035894 4 SLLIIFFFLALTL 16 (88)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (88)
.+|++++|+|+..
T Consensus 6 FalivVLFILLiI 18 (24)
T PF09680_consen 6 FALIVVLFILLII 18 (24)
T ss_pred chhHHHHHHHHHH
Confidence 3577788888654
No 116
>PF12930 DUF3836: Family of unknown function (DUF3836); InterPro: IPR024339 This entry represents a family of bacterial proteins of unknown function.; PDB: 3MSW_A.
Probab=22.59 E-value=1.1e+02 Score=21.45 Aligned_cols=28 Identities=29% Similarity=0.809 Sum_probs=21.5
Q ss_pred EEeccCCCcceEEeecceEEEEeCCCCCeEEEE
Q 035894 50 LAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFA 82 (88)
Q Consensus 50 iAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA 82 (88)
..-|.+|+ +..-.+.||+....+|+.+.
T Consensus 66 Y~YD~~gr-----l~eK~a~kWn~~k~~W~~~~ 93 (132)
T PF12930_consen 66 YKYDDNGR-----LTEKEAYKWNSNKNGWENYY 93 (132)
T ss_dssp EEEETTTT-----EEEEEEEEEETTTTEEEEEE
T ss_pred EEECCCCC-----EeeeeeeeecccccceeeeE
Confidence 55677777 66777889999877899753
No 117
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=22.56 E-value=46 Score=32.87 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=23.9
Q ss_pred eEEeccCCCcceEEeecceEEEEeCCCCCeEE
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQDSKLGWTE 80 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~ 80 (88)
-+-+|..|. .|++||||.+|+....+|++
T Consensus 609 ~ldl~r~G~---v~L~~G~i~~wD~ttq~W~~ 637 (1774)
T PF11725_consen 609 ILDLGRAGL---VGLQDGKIQYWDSTTQCWKD 637 (1774)
T ss_pred hhccccccc---eeeccceEeeecCcchhhhh
Confidence 345667776 79999999999998778986
No 118
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=22.07 E-value=31 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=19.7
Q ss_pred ceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
|-|.+-.+|++-|.=..+|.|+.|..++
T Consensus 86 ~~ipice~~~~yYcl~~~g~V~~W~~~g 113 (132)
T PF14567_consen 86 ELIPICEDGGDYYCLDQEGEVVYWSHNG 113 (132)
T ss_dssp TSEEEEEETTEEEEE-TTS-EEEE----
T ss_pred hheeEEecCCcEEEEeCCCeEEEecCCC
Confidence 5678888899899999999999998644
No 119
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=22.05 E-value=84 Score=25.07 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=17.1
Q ss_pred ceEEec----cCC--CcceEEeecceEEE
Q 035894 48 ESLAFD----CNG--KGPYAGVSDGRILK 70 (88)
Q Consensus 48 ESiAfD----~~G--~GpYTGv~DGRIlR 70 (88)
=+||+| .+| ...|.|+.||+|+|
T Consensus 367 T~i~v~~v~~~~~~~tV~flGT~~G~l~K 395 (433)
T PF01403_consen 367 TSIAVDRVQVENGSYTVAFLGTDDGRLHK 395 (433)
T ss_dssp EEEEEEEEEETTTCEEEEEEEETTSEEEE
T ss_pred eEEEEEEEecCCCcEEEEEEecCCceEEE
Confidence 567777 332 45788999999994
No 120
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=21.91 E-value=2.6e+02 Score=22.13 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=31.7
Q ss_pred cCCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeCCCCCeEEEE
Q 035894 31 KGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEFA 82 (88)
Q Consensus 31 ~~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~FA 82 (88)
.....+++.+|.+ .-.-+|+|..+.+|-.. -+.|.|+|=...+..|+...
T Consensus 4 ~~~~W~~v~l~t~-~~l~dV~F~d~~~G~~V-G~~g~il~T~DGG~tW~~~~ 53 (302)
T PF14870_consen 4 SGNSWQQVSLPTD-KPLLDVAFVDPNHGWAV-GAYGTILKTTDGGKTWQPVS 53 (302)
T ss_dssp SS--EEEEE-S-S-S-EEEEEESSSS-EEEE-ETTTEEEEESSTTSS-EE--
T ss_pred cCCCcEEeecCCC-CceEEEEEecCCEEEEE-ecCCEEEEECCCCccccccc
Confidence 4456778888754 57899999988885554 56799999877777898754
No 121
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=21.81 E-value=1.6e+02 Score=24.42 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=28.7
Q ss_pred CCCccCCceEEeccCCCcceEEeecceEEEEeC
Q 035894 41 PAGVVGPESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 41 ~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
+....|=-|+||.-.|+=+|.|..|..+.-|+-
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 334568889999999999999999999999975
No 122
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=21.57 E-value=1.5e+02 Score=23.36 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=25.7
Q ss_pred CCceEEeccCCCcceEEe-ecceEEEEeCCC
Q 035894 46 GPESLAFDCNGKGPYAGV-SDGRILKWQDSK 75 (88)
Q Consensus 46 GPESiAfD~~G~GpYTGv-~DGRIlR~~~~~ 75 (88)
.|+.+|+|++|.-+|..- .+++|..++...
T Consensus 161 ~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 161 TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred CcceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 789999999999889887 788888888654
No 123
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=21.51 E-value=1e+02 Score=23.74 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.3
Q ss_pred EeccCCCcceEEeecceEEEEeCCCC
Q 035894 51 AFDCNGKGPYAGVSDGRILKWQDSKL 76 (88)
Q Consensus 51 AfD~~G~GpYTGv~DGRIlR~~~~~~ 76 (88)
+.+.+|. +|.++.||+|.-++.+..
T Consensus 64 ~~~~dg~-v~~~~~~G~i~A~d~~~g 88 (370)
T COG1520 64 PADGDGT-VYVGTRDGNIFALNPDTG 88 (370)
T ss_pred cEeeCCe-EEEecCCCcEEEEeCCCC
Confidence 3677899 999999999999998653
No 124
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=21.50 E-value=76 Score=27.26 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.0
Q ss_pred ceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
-+++|+|+|.-+-||.+|+.+--|+-..
T Consensus 349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred eeEeECCCceEEeecCCCCcEEEeeecc
Confidence 4789999998899999999887777643
No 125
>PLN00181 protein SPA1-RELATED; Provisional
Probab=21.47 E-value=1.1e+02 Score=26.14 Aligned_cols=28 Identities=4% Similarity=0.132 Sum_probs=24.1
Q ss_pred CceEEeccCCCcceEEeecceEEEEeCC
Q 035894 47 PESLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
...++++++|.-+.+|..||+|.-|+..
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 3568999999889999999999999853
No 126
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=21.42 E-value=1e+02 Score=19.90 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.3
Q ss_pred CCCcceEEeecceEEEEe
Q 035894 55 NGKGPYAGVSDGRILKWQ 72 (88)
Q Consensus 55 ~G~GpYTGv~DGRIlR~~ 72 (88)
.|.|.+---.||+|+++-
T Consensus 15 PGtG~m~Vr~Dg~v~~Fc 32 (66)
T COG2075 15 PGTGIMYVRNDGKVLRFC 32 (66)
T ss_pred CCceEEEEecCCeEEEEe
Confidence 578888889999999974
No 127
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=21.42 E-value=77 Score=27.03 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.5
Q ss_pred eeEeeCCCCccCCceEEeccCCCcceEEeecceEEEEeC
Q 035894 35 HLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKWQD 73 (88)
Q Consensus 35 ~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~~~ 73 (88)
+..|.+. +-.=||.-.|.|||+=+-+|..||-|-.|+-
T Consensus 205 ~r~IKFg-~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny 242 (508)
T KOG0275|consen 205 ARSIKFG-QKSHVECARFSPDGQYLVSGSVDGFIEVWNY 242 (508)
T ss_pred hhheecc-cccchhheeeCCCCceEeeccccceeeeehh
Confidence 4567784 5578999999999998999999999999875
No 128
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=21.38 E-value=1.2e+02 Score=21.69 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=21.6
Q ss_pred CceEEeccCCCcceEEeecceEEEEeCCCCCeEEE
Q 035894 47 PESLAFDCNGKGPYAGVSDGRILKWQDSKLGWTEF 81 (88)
Q Consensus 47 PESiAfD~~G~GpYTGv~DGRIlR~~~~~~gw~~F 81 (88)
..-+.||-||. ..||+|+- ++++..+..|
T Consensus 7 i~~~v~d~dGv-----~tdg~~~~-~~~g~~~~~~ 35 (169)
T TIGR02726 7 IKLVILDVDGV-----MTDGRIVI-NDEGIESRNF 35 (169)
T ss_pred CeEEEEeCcee-----eECCeEEE-cCCCcEEEEE
Confidence 45688999987 78999875 6666556665
No 129
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.32 E-value=1.1e+02 Score=24.64 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.1
Q ss_pred CCceEEeccCCCcceEEeecceEEEEeCCC
Q 035894 46 GPESLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 46 GPESiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
+=-+++|.++|+=+.++..||.|.-|+-..
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence 334589999999888998899999999764
No 130
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=21.23 E-value=89 Score=20.66 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=12.7
Q ss_pred CcceEEeecceEEEEeCCC
Q 035894 57 KGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 57 ~GpYTGv~DGRIlR~~~~~ 75 (88)
.|+|.| ||+|+-+.+++
T Consensus 23 ~gIYvG--~~~ViH~~~~~ 39 (125)
T PF04970_consen 23 WGIYVG--DGEVIHFSGPG 39 (125)
T ss_dssp EEEEEE--TTEEEEEE-S-
T ss_pred EEEEec--CCeEEEecccc
Confidence 478988 99999998654
No 131
>smart00284 OLF Olfactomedin-like domains.
Probab=21.09 E-value=1.6e+02 Score=23.00 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=20.5
Q ss_pred eEEeccCC-CcceEEeec-ceEE--EEeCCCCC
Q 035894 49 SLAFDCNG-KGPYAGVSD-GRIL--KWQDSKLG 77 (88)
Q Consensus 49 SiAfD~~G-~GpYTGv~D-GRIl--R~~~~~~g 77 (88)
|+|+|..| -.+|+.-.+ |+|+ |++++.-.
T Consensus 132 DlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ 164 (255)
T smart00284 132 DLAVDENGLWVIYATEQNAGKIVISKLNPATLT 164 (255)
T ss_pred EEEEcCCceEEEEeccCCCCCEEEEeeCcccce
Confidence 56888888 457887554 9898 78875443
No 132
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=21.03 E-value=74 Score=29.06 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=23.3
Q ss_pred eEEeccCCCcceEEeecceEEEEeCCC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQDSK 75 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~~~ 75 (88)
-+++.+.|+-.-+|-.||||+-|..-+
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccc
Confidence 368899999888999999999998755
No 133
>PF07542 ATP12: ATP12 chaperone protein; InterPro: IPR011419 This entry represents a group of ATPase F1F0-assembly proteins, including ATP12 and ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2). These proteins are essential for the assembly of the mitochondrial F1-F0 complex. Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with N-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment []. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0043461 proton-transporting ATP synthase complex assembly; PDB: 2R6I_B 2ZD2_B 2P4X_B 2R31_A.
Probab=21.02 E-value=74 Score=22.03 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=13.0
Q ss_pred cCCCcceEEeecceEEEE
Q 035894 54 CNGKGPYAGVSDGRILKW 71 (88)
Q Consensus 54 ~~G~GpYTGv~DGRIlR~ 71 (88)
+.+.| |+-..|||.+|-
T Consensus 11 ~~~~g-~~V~LDgR~lkT 27 (122)
T PF07542_consen 11 ENDGG-FQVLLDGRPLKT 27 (122)
T ss_dssp EETTS-EEEEETTEE-BE
T ss_pred ecCCC-EEEEeCCCCCCC
Confidence 45565 999999999994
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.95 E-value=88 Score=27.86 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.9
Q ss_pred ceEEeccCCCcceEEeecceEEEEeCC
Q 035894 48 ESLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 48 ESiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
-++||.++|.=+-.|.+.|||+.|+--
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecc
Confidence 468999999888999999999999763
No 135
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=20.91 E-value=1.1e+02 Score=21.60 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=13.2
Q ss_pred EEeecceEEEEeCCCCC
Q 035894 61 AGVSDGRILKWQDSKLG 77 (88)
Q Consensus 61 TGv~DGRIlR~~~~~~g 77 (88)
--.+||+|++|...+++
T Consensus 105 Qty~dg~vv~w~~~g~~ 121 (124)
T cd08523 105 SEKGDHRIAGTQDEGSG 121 (124)
T ss_pred EEEeCCEEEEEEecCCc
Confidence 45779999999876654
No 136
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=20.43 E-value=1.7e+02 Score=23.91 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=30.4
Q ss_pred ccCCceeEeeCCCCccCCceEEeccCCCcceEEeecceEEEE
Q 035894 30 RKGNHHLKLQLPAGVVGPESLAFDCNGKGPYAGVSDGRILKW 71 (88)
Q Consensus 30 ~~~~~~~~l~l~~~v~GPESiAfD~~G~GpYTGv~DGRIlR~ 71 (88)
+....++.|.+-...+.=.++||.|.|. +|+--++-+-+|+
T Consensus 18 ~~k~~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ri 58 (350)
T KOG0641|consen 18 KEKKHFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRI 58 (350)
T ss_pred ccccceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEE
Confidence 3344455554434557889999999998 9999999988886
No 137
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=20.29 E-value=1.2e+02 Score=17.49 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=12.9
Q ss_pred cceEEEEeCCCCCeEEEEECCC
Q 035894 65 DGRILKWQDSKLGWTEFASTTP 86 (88)
Q Consensus 65 DGRIlR~~~~~~gw~~FA~Ts~ 86 (88)
-..|+||..++ |-+.|.++.+
T Consensus 12 aa~vYk~~D~~-G~v~ysd~P~ 32 (60)
T PF13511_consen 12 AAEVYKWVDEN-GVVHYSDTPP 32 (60)
T ss_pred hccEEEEECCC-CCEEECccCC
Confidence 35788886433 5667776654
No 138
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=20.22 E-value=1e+02 Score=26.53 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.8
Q ss_pred eEEeccCCCcceEEeecceEEEEeCC
Q 035894 49 SLAFDCNGKGPYAGVSDGRILKWQDS 74 (88)
Q Consensus 49 SiAfD~~G~GpYTGv~DGRIlR~~~~ 74 (88)
+++..|||.-+-+|..||.|.-|++.
T Consensus 162 cvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 162 CVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred EEEECCCcchhhccccCCeEEEecCC
Confidence 67899999999999999999999964
Done!