Your job contains 1 sequence.
>035899
MKENDEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVN
GKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCL
ILGEEEKRRLK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035899
(131 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2159295 - symbol:RUG3 "RCC1/UVR8/GEF-like 3" s... 269 5.5e-23 1
ZFIN|ZDB-GENE-081015-2 - symbol:rpgrb "retinitis pigmento... 127 9.6e-07 1
TAIR|locus:505006603 - symbol:AT5G12350 "AT5G12350" speci... 124 1.5e-06 1
TAIR|locus:2025277 - symbol:PRAF1 "AT1G76950" species:370... 120 4.0e-06 1
TAIR|locus:504956339 - symbol:RUG1 "AT5G08710" species:37... 112 8.4e-06 1
ZFIN|ZDB-GENE-090313-139 - symbol:herc3 "hect domain and ... 116 1.0e-05 1
TAIR|locus:2146142 - symbol:AT5G16040 "AT5G16040" species... 109 1.5e-05 1
TAIR|locus:2144291 - symbol:AT5G11580 "AT5G11580" species... 110 2.0e-05 1
TAIR|locus:2076889 - symbol:AT3G02510 "AT3G02510" species... 106 3.2e-05 1
UNIPROTKB|Q9UII4 - symbol:HERC5 "E3 ISG15--protein ligase... 111 3.3e-05 1
UNIPROTKB|F1PB99 - symbol:HERC5 "Uncharacterized protein"... 109 5.5e-05 1
FB|FBgn0031107 - symbol:HERC2 "HECT and RLD domain contai... 115 6.9e-05 1
TAIR|locus:2165770 - symbol:AT5G42140 "AT5G42140" species... 97 7.9e-05 2
RGD|1306366 - symbol:Herc1 "HECT and RLD domain containin... 108 8.4e-05 1
UNIPROTKB|F1N1N9 - symbol:HERC5 "Uncharacterized protein"... 105 0.00013 1
DICTYBASE|DDB_G0282633 - symbol:DDB_G0282633 "putative gu... 103 0.00021 1
TAIR|locus:2156233 - symbol:RUG2 "RCC1/UVR8/GEF-like 2" s... 98 0.00029 1
UNIPROTKB|Q92834 - symbol:RPGR "X-linked retinitis pigmen... 102 0.00030 1
UNIPROTKB|F1MNS0 - symbol:HERC1 "Uncharacterized protein"... 108 0.00037 1
UNIPROTKB|F1S098 - symbol:HERC1 "Uncharacterized protein"... 108 0.00037 1
UNIPROTKB|Q15751 - symbol:HERC1 "Probable E3 ubiquitin-pr... 108 0.00037 1
UNIPROTKB|E1C4H7 - symbol:HERC1 "Uncharacterized protein"... 108 0.00037 1
UNIPROTKB|E2QYQ5 - symbol:HERC1 "Uncharacterized protein"... 108 0.00037 1
MGI|MGI:1919784 - symbol:Rcc2 "regulator of chromosome co... 96 0.00058 1
TAIR|locus:2079147 - symbol:AT3G47660 "AT3G47660" species... 99 0.00059 1
RGD|1561739 - symbol:Herc6 "HECT and RLD domain containin... 99 0.00064 1
UNIPROTKB|F1LPM8 - symbol:Herc6 "Protein Herc6" species:1... 99 0.00064 1
UNIPROTKB|E1BW48 - symbol:HERC2 "Uncharacterized protein"... 103 0.00068 2
UNIPROTKB|E1C8K2 - symbol:HERC2 "Uncharacterized protein"... 103 0.00068 2
UNIPROTKB|F1NUG6 - symbol:Gga.50841 "Uncharacterized prot... 97 0.00068 1
>TAIR|locus:2159295 [details] [associations]
symbol:RUG3 "RCC1/UVR8/GEF-like 3" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008536 "Ran GTPase binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IMP] [GO:0032981 "mitochondrial respiratory chain complex
I assembly" evidence=IMP] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005739 EMBL:CP002688 GO:GO:0008380 EMBL:AB015472
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0032981
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.29139
UniGene:At.50545 HSSP:P18754 IPI:IPI00532631 RefSeq:NP_200895.2
ProteinModelPortal:Q9FJG9 SMR:Q9FJG9 PRIDE:Q9FJG9
EnsemblPlants:AT5G60870.1 GeneID:836208 KEGG:ath:AT5G60870
TAIR:At5g60870 HOGENOM:HOG000030010 InParanoid:Q9FJG9 OMA:ISCGLFH
PhylomeDB:Q9FJG9 ProtClustDB:CLSN2681113 Genevestigator:Q9FJG9
Uniprot:Q9FJG9
Length = 445
Score = 269 (99.8 bits), Expect = 5.5e-23, P = 5.5e-23
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 23 LFNSENSPNWNQLANL--SVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHED 80
LF S+ S + Q + S F SCGLFHSGL ++G LWIWGKGDGGRLGFG E+
Sbjct: 79 LFRSDQSFSLAQTPGRIDADSSSFRIGISCGLFHSGLTIDGDLWIWGKGDGGRLGFGQEN 138
Query: 81 AAFVPTLNPYLDDH-VRCIALGGVHSIALT 109
+ FVP LNP ++H +RCIALGG+HS+ALT
Sbjct: 139 SVFVPNLNPLFEEHSIRCIALGGLHSVALT 168
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 26/65 (40%), Positives = 31/65 (47%)
Query: 47 SSSCG-LFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVH 104
S SCG F L G+LW WG LG G + P P L+ + IA GG H
Sbjct: 266 SVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYH 325
Query: 105 SIALT 109
S+ALT
Sbjct: 326 SLALT 330
>ZFIN|ZDB-GENE-081015-2 [details] [associations]
symbol:rpgrb "retinitis pigmentosa GTPase regulator
b" species:7955 "Danio rerio" [GO:0060287 "epithelial cilium
movement involved in determination of left/right asymmetry"
evidence=IMP] [GO:0060271 "cilium morphogenesis" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0007018
"microtubule-based movement" evidence=IMP] INTERPRO:IPR000408
Pfam:PF00415 ZFIN:ZDB-GENE-081015-2 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0010842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 GO:GO:0060271 GO:GO:0060287
GeneTree:ENSGT00700000104160 EMBL:CR450831 IPI:IPI00798788
RefSeq:XP_685964.5 UniGene:Dr.100975 Ensembl:ENSDART00000088624
GeneID:557752 KEGG:dre:557752 CTD:557752 NextBio:20882140
Bgee:F1QM29 Uniprot:F1QM29
Length = 1413
Score = 127 (49.8 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 48 SSCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAA--FVPTLNP-YLDDHVRCIALGGV 103
++CG H+ L+ NG L+ +G G G+LG G E+ F PTL P +LD HV + GG
Sbjct: 301 AACGENHTALITDNGLLYTFGDGRHGKLGLGEENFTNQFKPTLCPRFLDYHVHSVTCGGC 360
Query: 104 HSIALTSLAVEECNRCLILGEEE 126
H + L E + LIL E++
Sbjct: 361 HMLVLAKPRTERPDD-LILEEDD 382
Score = 112 (44.5 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 38 LSVSKRFSNSSSCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAF--VPTLNPYLDDH 94
+SV KR SCG +HS V V+G L+ +G+ D G+LG E A VP + D
Sbjct: 187 VSVGKRVF-WVSCGYYHSAFVTVDGALYTFGEKDSGKLGLSTEKLANHKVPQQVTDIPDR 245
Query: 95 VRCIALGGVHSIALT 109
V +A GG H++ALT
Sbjct: 246 VVQVACGGGHTVALT 260
Score = 99 (39.9 bits), Expect = 0.00091, P = 0.00091
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 26 SENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFV 84
++N+P+ L N V R S CG H+ LV NGKL+++G + G+LG G +
Sbjct: 24 ADNAPSKFWLKN-DVPLRIS----CGDEHTALVTENGKLFMFGSNNWGQLGLGTKTTVNK 78
Query: 85 PTLNPYL-DDHVRCIALGGVHSIALTS 110
PT L + V+ A G H++ TS
Sbjct: 79 PTCVKALKSERVKLTACGRTHTLVFTS 105
>TAIR|locus:505006603 [details] [associations]
symbol:AT5G12350 "AT5G12350" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0008536 "Ran GTPase binding" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0010638 "positive regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0042546 "cell wall
biogenesis" evidence=RCA] [GO:0044036 "cell wall macromolecule
metabolic process" evidence=RCA] [GO:0045492 "xylan biosynthetic
process" evidence=RCA] InterPro:IPR000306 InterPro:IPR001849
InterPro:IPR024774 Pfam:PF01363 Pfam:PF12814 SMART:SM00064
SMART:SM00233 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005886
GO:GO:0005938 EMBL:CP002688 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0046872 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 Gene3D:3.30.40.10
InterPro:IPR017455 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 PROSITE:PS50178 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0032065 InterPro:IPR013591 Pfam:PF08381
PROSITE:PS51514 IPI:IPI00540281 RefSeq:NP_568268.3 UniGene:At.22310
UniGene:At.51056 ProteinModelPortal:F4K0X5 SMR:F4K0X5
EnsemblPlants:AT5G12350.1 GeneID:831110 KEGG:ath:AT5G12350
OMA:NTNGHPR Uniprot:F4K0X5
Length = 1075
Score = 124 (48.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPT-LNPYLDD-HVRCIALGGVHS 105
+CG FHS + ++G L+ WGKGD G LG G+E + +VP +N L+ HV IA G H+
Sbjct: 366 ACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHT 425
Query: 106 IALTS 110
+TS
Sbjct: 426 AVVTS 430
Score = 106 (42.4 bits), Expect = 0.00012, P = 0.00012
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 32 WNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYL 91
W+ A + V S+SS+C +GKL+ WG GD GRLG G+++ VPT L
Sbjct: 475 WHTAAVVEVMVGSSSSSNCS--------SGKLFTWGDGDKGRLGHGNKEPKLVPTCVAAL 526
Query: 92 DDHVRC-IALGGVHSIALTS 110
+ C +A G ++ALT+
Sbjct: 527 VEPNFCQVACGHSLTVALTT 546
Score = 102 (41.0 bits), Expect = 0.00032, P = 0.00032
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 42 KRFSNSSSCGLFHSGLVVNG-KLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIA 99
K F +CG +H ++ + +++ WGKG GRLG G D PTL L D V+ IA
Sbjct: 580 KSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESLKDKQVKSIA 639
Query: 100 LG 101
G
Sbjct: 640 CG 641
>TAIR|locus:2025277 [details] [associations]
symbol:PRAF1 "AT1G76950" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=ISS]
[GO:0008536 "Ran GTPase binding" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR000306 Pfam:PF01363
SMART:SM00064 INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002684
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0046872
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.30.40.10 InterPro:IPR017455 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 PROSITE:PS50178 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR013591 Pfam:PF08381
PROSITE:PS51514 HSSP:Q15075 EMBL:AF323270 IPI:IPI00521580
RefSeq:NP_565144.1 UniGene:At.19186 ProteinModelPortal:Q947D2
SMR:Q947D2 PRIDE:Q947D2 EnsemblPlants:AT1G76950.1 GeneID:844030
KEGG:ath:AT1G76950 TAIR:At1g76950 InParanoid:Q947D2 OMA:WIPKRIA
PhylomeDB:Q947D2 ProtClustDB:CLSN2686442 Genevestigator:Q947D2
Uniprot:Q947D2
Length = 1103
Score = 120 (47.3 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 32/98 (32%), Positives = 48/98 (48%)
Query: 40 VSKRFSNSSSCGLFH-SGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRC 97
++ F SCG +H + L +++ WGKG GRLG G + VPT+ L D HV+
Sbjct: 554 LASEFVEEISCGAYHVAALTSRNEVYTWGKGANGRLGHGDLEDRKVPTIVEALKDRHVKY 613
Query: 98 IALGGVHSIAL------TSLAVEECNRC-LILGEEEKR 128
IA G ++ A+ + +C+ C L G KR
Sbjct: 614 IACGSNYTAAICLHKWVSGAEQSQCSTCRLAFGFTRKR 651
Score = 101 (40.6 bits), Expect = 0.00042, P = 0.00042
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 32 WNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYL 91
W+ A + + SNSSS V +GKL+ WG GD RLG G +D PT P L
Sbjct: 451 WHTAAVVEIIVTQSNSSS--------VSSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPAL 502
Query: 92 DDH-VRCIALGGVHSIALTS 110
D+ IA G ++ LT+
Sbjct: 503 IDYNFHKIACGHSLTVGLTT 522
>TAIR|locus:504956339 [details] [associations]
symbol:RUG1 "AT5G08710" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008536 "Ran GTPase binding"
evidence=ISS] INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
EMBL:BT005498 EMBL:AK118882 IPI:IPI00533904 RefSeq:NP_680156.2
UniGene:At.45869 ProteinModelPortal:Q8GWF2 SMR:Q8GWF2 PRIDE:Q8GWF2
EnsemblPlants:AT5G08710.1 GeneID:830771 KEGG:ath:AT5G08710
TAIR:At5g08710 HOGENOM:HOG000006005 InParanoid:Q8GWF2 OMA:HSACIDE
PhylomeDB:Q8GWF2 ProtClustDB:CLSN2690903 Genevestigator:Q8GWF2
Uniprot:Q8GWF2
Length = 434
Score = 112 (44.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 49 SCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFV--PTLNPYLDD-HVRCIALGGVH 104
S G +HS + V+G+L++WGK G+LG G + A V PT L ++ +ALG H
Sbjct: 140 SAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEH 199
Query: 105 SIALT 109
S+A+T
Sbjct: 200 SVAVT 204
Score = 108 (43.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 65 IWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSIALT 109
+WG GD GRLG G+ D+ + P + L DH + +A GG H++ LT
Sbjct: 53 MWGSGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLT 98
>ZFIN|ZDB-GENE-090313-139 [details] [associations]
symbol:herc3 "hect domain and RLD 3" species:7955
"Danio rerio" [GO:0006464 "cellular protein modification process"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 ZFIN:ZDB-GENE-090313-139
GO:GO:0016567 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00660000095216 CTD:8916 HOGENOM:HOG000208452
HOVERGEN:HBG050878 OMA:SPAVDFR OrthoDB:EOG4RBQHS EMBL:CU467858
IPI:IPI00901161 RefSeq:NP_001139096.1 UniGene:Dr.86009
Ensembl:ENSDART00000112994 Ensembl:ENSDART00000141977
GeneID:100003587 NextBio:20785898 Uniprot:B8JLD4
Length = 1046
Score = 116 (45.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 49 SCGLFHSGLVVN--GKLWIWGKGDGGRLGFGH-EDAAFVPTLNPYLDDH-VRCIALGGVH 104
SCG HS L VN G+++ WG GDGG+LG G E+A VP L L +H + + G H
Sbjct: 90 SCGQAHS-LAVNEQGQVFAWGAGDGGQLGLGTAEEAVRVPRLIKKLCEHRISQVMCGNHH 148
Query: 105 SIALT 109
IAL+
Sbjct: 149 CIALS 153
>TAIR|locus:2146142 [details] [associations]
symbol:AT5G16040 "AT5G16040" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008536 "Ran GTPase binding" evidence=ISS]
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688 EMBL:AL391145
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.19750
UniGene:At.49027 EMBL:BT028960 IPI:IPI00525887 PIR:T51387
RefSeq:NP_197108.1 HSSP:O87916 ProteinModelPortal:Q9LFS0 SMR:Q9LFS0
PRIDE:Q9LFS0 EnsemblPlants:AT5G16040.1 GeneID:831461
KEGG:ath:AT5G16040 TAIR:At5g16040 InParanoid:Q9LFS0 OMA:TTGHPME
PhylomeDB:Q9LFS0 ProtClustDB:CLSN2686124 Genevestigator:Q9LFS0
Uniprot:Q9LFS0
Length = 396
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 49 SCGLFHSGLVVN-GKLWIWGKGDGGRLGFGHEDAA--FVPT-LNPYLDDHVRCIALGGVH 104
+ G +HS + N G+++ WG+G+ GRLGFG D + +P +N + + ++ GG H
Sbjct: 254 AAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTH 313
Query: 105 SIALT 109
S+ALT
Sbjct: 314 SVALT 318
Score = 99 (39.9 bits), Expect = 0.00019, P = 0.00019
Identities = 26/62 (41%), Positives = 31/62 (50%)
Query: 51 GLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRC-IALGGVHSIAL 108
G FH+ L +G LW WG + G+LG G P LDD IA GG HS AL
Sbjct: 204 GAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTAL 263
Query: 109 TS 110
T+
Sbjct: 264 TN 265
>TAIR|locus:2144291 [details] [associations]
symbol:AT5G11580 "AT5G11580" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008536 "Ran GTPase binding" evidence=ISS]
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 HSSP:P18754 EMBL:AY058861 EMBL:AY079040
IPI:IPI00537184 RefSeq:NP_568250.1 UniGene:At.5137 UniGene:At.75215
ProteinModelPortal:Q93Z10 SMR:Q93Z10 PRIDE:Q93Z10
EnsemblPlants:AT5G11580.1 GeneID:831030 KEGG:ath:AT5G11580
TAIR:At5g11580 InParanoid:Q93Z10 OMA:WTFGLGD PhylomeDB:Q93Z10
ProtClustDB:CLSN2689608 Genevestigator:Q93Z10 Uniprot:Q93Z10
Length = 553
Score = 110 (43.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 41 SKRFSN--SSSCGLFHSGLVVNG--KLWIWGKGDGGRLGFGHEDAAFVPTL 87
S RF + SCG H+ LVV+G KLW WG+G G LG G+ +VPTL
Sbjct: 379 SSRFRDPVQVSCGAAHTVLVVDGGYKLWSWGRGRNGVLGTGNVSDCYVPTL 429
>TAIR|locus:2076889 [details] [associations]
symbol:AT3G02510 "AT3G02510" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0008536 "Ran GTPase binding" evidence=ISS] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.20016
UniGene:At.41128 EMBL:AK227929 IPI:IPI00539921 RefSeq:NP_186900.3
UniGene:At.70614 ProteinModelPortal:Q0WSJ9 SMR:Q0WSJ9 PRIDE:Q0WSJ9
EnsemblPlants:AT3G02510.1 GeneID:821100 KEGG:ath:AT3G02510
TAIR:At3g02510 OMA:NGGVQCW PhylomeDB:Q0WSJ9 Genevestigator:Q2V3Z2
Uniprot:Q0WSJ9
Length = 393
Score = 106 (42.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAA--FVPT-LNPYLDDHVRCIALGGVH 104
+ G +HS L G+++ WG+G+ GRLG G D + VP +N ++ + ++ GG H
Sbjct: 254 AAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTH 313
Query: 105 SIALT 109
S+ALT
Sbjct: 314 SVALT 318
>UNIPROTKB|Q9UII4 [details] [associations]
symbol:HERC5 "E3 ISG15--protein ligase HERC5" species:9606
"Homo sapiens" [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] [GO:0032020 "ISG15-protein conjugation" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042296 "ISG15
ligase activity" evidence=IDA] [GO:0050688 "regulation of defense
response to virus" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 EMBL:AY337518
EMBL:AB027289 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005829
GO:GO:0005634 GO:GO:0048471 Reactome:REACT_6900 GO:GO:0000079
GO:GO:0045087 GO:GO:0019221 GO:GO:0051607 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
GO:GO:0032480 GO:GO:0050688 SUPFAM:SSF56204 eggNOG:COG5021
HOGENOM:HOG000208452 HOVERGEN:HBG050878 EMBL:AC083829 EMBL:BC140716
IPI:IPI00008821 RefSeq:NP_057407.2 UniGene:Hs.26663
ProteinModelPortal:Q9UII4 SMR:Q9UII4 DIP:DIP-44200N IntAct:Q9UII4
STRING:Q9UII4 PhosphoSite:Q9UII4 DMDM:296434523 PaxDb:Q9UII4
PRIDE:Q9UII4 Ensembl:ENST00000264350 GeneID:51191 KEGG:hsa:51191
UCSC:uc003hrt.3 CTD:51191 GeneCards:GC04P089378 H-InvDB:HIX0200636
HGNC:HGNC:24368 HPA:HPA043929 MIM:608242 neXtProt:NX_Q9UII4
PharmGKB:PA134973940 InParanoid:Q9UII4 OMA:KDWITNT
OrthoDB:EOG4N30N6 PhylomeDB:Q9UII4 GenomeRNAi:51191 NextBio:54182
ArrayExpress:Q9UII4 Bgee:Q9UII4 CleanEx:HS_HERC5
Genevestigator:Q9UII4 GermOnline:ENSG00000138646 GO:GO:0042296
GO:GO:0032020 Uniprot:Q9UII4
Length = 1024
Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
S G HS L ++G ++ WGK + G+LG GH ++ P+L LD+ V +A GG HS
Sbjct: 197 SAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSA 256
Query: 107 ALT 109
LT
Sbjct: 257 LLT 259
>UNIPROTKB|F1PB99 [details] [associations]
symbol:HERC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0016567 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 OMA:KDWITNT EMBL:AAEX03016753
EMBL:AAEX03016752 Ensembl:ENSCAFT00000015560 Uniprot:F1PB99
Length = 1025
Score = 109 (43.4 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
S G HS L ++G ++ WG+ D G+LG GH + P+L LD+ V +A GG H+
Sbjct: 196 SAGKAHSMALSMSGNIYSWGRNDLGQLGLGHTNGEDFPSLIEALDNQKVEFLACGGSHTA 255
Query: 107 ALT 109
LT
Sbjct: 256 LLT 258
>FB|FBgn0031107 [details] [associations]
symbol:HERC2 "HECT and RLD domain containing protein 2
ortholog (H. sapiens)" species:7227 "Drosophila melanogaster"
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=NAS] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA;NAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0020037 "heme binding" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF06701 PROSITE:PS50237 PROSITE:PS51416
SMART:SM00119 UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005737 GO:GO:0005814 GO:GO:0046872
EMBL:AE014298 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 InterPro:IPR015940 PROSITE:PS50030
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
PROSITE:PS51284 InterPro:IPR000859 SUPFAM:SSF49854 GO:GO:0042787
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00700000104208 EMBL:AY113293 EMBL:AF189221
RefSeq:NP_608388.2 UniGene:Dm.3302 ProteinModelPortal:Q9VR91
SMR:Q9VR91 IntAct:Q9VR91 STRING:Q9VR91 PaxDb:Q9VR91
EnsemblMetazoa:FBtr0301344 GeneID:33035 KEGG:dme:Dmel_CG11734
UCSC:CG11734-RB CTD:8924 FlyBase:FBgn0031107 InParanoid:Q9VR91
KO:K10595 OMA:QLAFTRD OrthoDB:EOG48GTJ3 PhylomeDB:Q9VR91
GenomeRNAi:33035 NextBio:781623 Bgee:Q9VR91 GermOnline:CG11734
Uniprot:Q9VR91
Length = 4912
Score = 115 (45.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 50 CGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGG--VHS 105
CG +S + G L WG+G RLG G+ D +PTL L DH V +ALG HS
Sbjct: 675 CGCSYSAAITCGGNLLTWGRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGDAHS 734
Query: 106 IALTS 110
+ALTS
Sbjct: 735 LALTS 739
>TAIR|locus:2165770 [details] [associations]
symbol:AT5G42140 "AT5G42140" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0008536 "Ran GTPase binding" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007165 "signal
transduction" evidence=ISS] [GO:0035091 "phosphatidylinositol
binding" evidence=ISS] InterPro:IPR000306 Pfam:PF01363
SMART:SM00064 INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0046872 EMBL:AB017067 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.30.40.10 InterPro:IPR017455
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
PROSITE:PS50178 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 InterPro:IPR013591 Pfam:PF08381 PROSITE:PS51514
HSSP:Q15075 ProtClustDB:CLSN2686442 IPI:IPI00533393
RefSeq:NP_199029.1 UniGene:At.28039 ProteinModelPortal:Q9FHX1
SMR:Q9FHX1 PRIDE:Q9FHX1 EnsemblPlants:AT5G42140.1 GeneID:834219
KEGG:ath:AT5G42140 TAIR:At5g42140 HOGENOM:HOG000240974
InParanoid:Q9FHX1 OMA:RNEVFTW PhylomeDB:Q9FHX1
Genevestigator:Q9FHX1 Uniprot:Q9FHX1
Length = 1073
Score = 97 (39.2 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 49 SCGLFHSGLVVN-GKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSI 106
+CG +H ++ + +++ WGKG GRLG G + PTL L + HV+ IA G +
Sbjct: 552 ACGAYHVAVLTSRNEVFTWGKGANGRLGHGDVEDRKAPTLVDALKERHVKNIACGSNFTA 611
Query: 107 AL 108
A+
Sbjct: 612 AI 613
Score = 35 (17.4 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 24 FNSENSPNWNQLANLSVSKRFSNSSS 49
+NS N P ++ N SVS S+ +S
Sbjct: 166 YNSTNFPRTSRTEN-SVSSERSHVAS 190
>RGD|1306366 [details] [associations]
symbol:Herc1 "HECT and RLD domain containing E3 ubiquitin
protein ligase family member 1" species:10116 "Rattus norvegicus"
[GO:0010507 "negative regulation of autophagy" evidence=ISO]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISO] [GO:0031175 "neuron projection development"
evidence=ISO] [GO:0050885 "neuromuscular process controlling
balance" evidence=ISO] RGD:1306366 INTERPRO:IPR000408 Pfam:PF00415
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 OrthoDB:EOG40GCPW
GeneTree:ENSGT00700000104312 IPI:IPI00765979
Ensembl:ENSRNOT00000049300 UCSC:RGD:1306366 Uniprot:D3Z9N9
Length = 1203
Score = 108 (43.1 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 49 SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIA 107
S G HS V +G+L+ WG+GD GRLG G ++ +PTL + + V ++ G H+IA
Sbjct: 517 SAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN-VGEVSCGSSHTIA 575
Query: 108 LT 109
L+
Sbjct: 576 LS 577
Score = 102 (41.0 bits), Expect = 0.00037, P = 0.00037
Identities = 29/89 (32%), Positives = 42/89 (47%)
Query: 49 SCGLFHS-GLVVNGK-LWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHS 105
SCG H+ L +G+ +W +G GD G+LG G + + P + L +R + G S
Sbjct: 567 SCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSS 626
Query: 106 IALTSLA---VEECNRCLILGEEEKRRLK 131
+ALTS C CL G E L+
Sbjct: 627 LALTSTGQVYAWGCGACLGCGSSEATALR 655
>UNIPROTKB|F1N1N9 [details] [associations]
symbol:HERC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050688 "regulation of defense response to virus"
evidence=IEA] [GO:0042296 "ISG15 ligase activity" evidence=IEA]
[GO:0032020 "ISG15-protein conjugation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0016567 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0050688 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 OMA:KDWITNT GO:GO:0042296
GO:GO:0032020 EMBL:DAAA02017014 IPI:IPI00907336
Ensembl:ENSBTAT00000052811 Uniprot:F1N1N9
Length = 959
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 7 ELYIFSLMAEEALVV-RLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHS-GLVVNGKLW 64
EL+ + + L V R+F S ++P + NLS S+ G HS L ++G ++
Sbjct: 168 ELFAWGQNLDGQLGVGRIFASTSTPEI--VENLSGVPLVQISA--GEAHSMALSMSGNVY 223
Query: 65 IWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSIALT 109
WG+ D G+LG GH P+ LDD V +A GG H+ LT
Sbjct: 224 SWGRNDCGQLGLGHTYNKESPSCIEALDDQKVEFLACGGCHTALLT 269
>DICTYBASE|DDB_G0282633 [details] [associations]
symbol:DDB_G0282633 "putative guanine nucleotide
exchange factor (GEF)" species:44689 "Dictyostelium discoideum"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR002110 InterPro:IPR000210
InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50088 PROSITE:PS50097
SMART:SM00225 SMART:SM00248 dictyBase:DDB_G0282633
INTERPRO:IPR000408 Pfam:PF00415 EMBL:AAFI02000047 Gene3D:1.25.40.20
InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
RefSeq:XP_640165.2 ProteinModelPortal:Q54S74
EnsemblProtists:DDB0234270 GeneID:8623703 KEGG:ddi:DDB_G0282633
OMA:RLAYLCN ProtClustDB:CLSZ2501699 Uniprot:Q54S74
Length = 919
Score = 103 (41.3 bits), Expect = 0.00021, P = 0.00021
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 34 QLANLSVSKRFSNSSSCGLFHSGLVVN--GKLWIWGKGDGGRLGFGHEDAAFVPTLNPYL 91
Q+ LS +KR S +CG HS L ++ G+++ WG G GRLG G+ D + VPT P L
Sbjct: 239 QILELS-NKRIK-SIACGTHHS-LAMDDLGQVYSWGNGASGRLGLGN-DFSIVPT--PTL 292
Query: 92 DDHVRCIALGGVHSIALTSLAVEECNRCLILG 123
+ I G + IA T++A C+ +ILG
Sbjct: 293 ---ISVINRFGSNEIA-TAIAAG-CDNSMILG 319
>TAIR|locus:2156233 [details] [associations]
symbol:RUG2 "RCC1/UVR8/GEF-like 2" species:3702
"Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
HSSP:P18754 EMBL:BT005508 EMBL:AK117526 IPI:IPI00527447
RefSeq:NP_199644.2 UniGene:At.29855 ProteinModelPortal:Q8GYL6
SMR:Q8GYL6 PRIDE:Q8GYL6 EnsemblPlants:AT5G48330.1 GeneID:834886
KEGG:ath:AT5G48330 TAIR:At5g48330 HOGENOM:HOG000238877
InParanoid:Q8GYL6 OMA:SAGHYHS PhylomeDB:Q8GYL6
ProtClustDB:CLSN2680477 ArrayExpress:Q8GYL6 Genevestigator:Q8GYL6
Uniprot:Q8GYL6
Length = 455
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 35 LANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDA-AFVPT-LNPYLD 92
L N++V F++ G+ + + +G LW+WG+ G+LG G+ A VP+ +
Sbjct: 135 LENVNVQAAFAS----GVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAA 190
Query: 93 DHVRCIALGGVHSIALT 109
+HV ++LG H++ALT
Sbjct: 191 EHVVKVSLGWGHALALT 207
>UNIPROTKB|Q92834 [details] [associations]
symbol:RPGR "X-linked retinitis pigmentosa GTPase
regulator" species:9606 "Homo sapiens" [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=IEA]
[GO:0050896 "response to stimulus" evidence=IEA] [GO:0035085
"cilium axoneme" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007601 "visual perception" evidence=IMP] [GO:0001750
"photoreceptor outer segment" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0042384 "cilium assembly"
evidence=IMP] [GO:0042073 "intraflagellar transport" evidence=ISS]
[GO:0036064 "cilium basal body" evidence=ISS] [GO:0036126 "sperm
flagellum" evidence=ISS] [GO:0006886 "intracellular protein
transport" evidence=TAS] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005794 GO:GO:0005813 GO:GO:0006886 GO:GO:0007601
Orphanet:1872 Orphanet:791 GO:GO:0050896 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005085 GO:GO:0042384
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
EMBL:CH471141 GO:GO:0042073 GO:GO:0001750 eggNOG:COG5184
Orphanet:244 GO:GO:0036064 Orphanet:49382 GO:GO:0036126
EMBL:AL606748 CTD:6103 HOVERGEN:HBG026899 EMBL:U57629 EMBL:X97668
EMBL:AJ238395 EMBL:AJ318463 EMBL:BC031624 EMBL:AF286471
EMBL:BK005711 IPI:IPI00023757 IPI:IPI00215806 IPI:IPI00215807
IPI:IPI00215808 IPI:IPI00382445 IPI:IPI00397031 RefSeq:NP_000319.1
RefSeq:NP_001030025.1 UniGene:Hs.61438 ProteinModelPortal:Q92834
SMR:Q92834 STRING:Q92834 PhosphoSite:Q92834 DMDM:23503098
PaxDb:Q92834 PRIDE:Q92834 DNASU:6103 Ensembl:ENST00000309513
Ensembl:ENST00000318842 Ensembl:ENST00000338898
Ensembl:ENST00000339363 Ensembl:ENST00000342811
Ensembl:ENST00000378505 Ensembl:ENST00000474584
Ensembl:ENST00000482855 GeneID:6103 KEGG:hsa:6103 UCSC:uc004deb.3
GeneCards:GC0XM038128 HGNC:HGNC:10295 HPA:HPA001593 MIM:300029
MIM:300455 MIM:300834 MIM:304020 MIM:312610 neXtProt:NX_Q92834
Orphanet:247522 PharmGKB:PA34656 OMA:NNVLPHY PhylomeDB:Q92834
ChiTaRS:RPGR GenomeRNAi:6103 NextBio:23741 ArrayExpress:Q92834
Bgee:Q92834 CleanEx:HS_RPGR Genevestigator:Q92834
GermOnline:ENSG00000156313 Uniprot:Q92834
Length = 1020
Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 25 NSENSPNWNQLANLSVSKRFSNSS-----SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGH 78
NSE ++N+ V ++ + SCG +HS V +G+L+++G+ + G+LG +
Sbjct: 167 NSEGQIGLKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPN 226
Query: 79 EDAAF--VPTLNPYLDDHVRCIALGGVHSIALTSLAV 113
+ P L + + V +A GG H++ LT AV
Sbjct: 227 QLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTENAV 263
>UNIPROTKB|F1MNS0 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR017986 InterPro:IPR000569 InterPro:IPR001680
InterPro:IPR003877 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 INTERPRO:IPR000408 Pfam:PF00415 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016567
GO:GO:0005622 InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 SUPFAM:SSF56204
OMA:HHYQDGI GeneTree:ENSGT00700000104312 EMBL:DAAA02028744
EMBL:DAAA02028745 EMBL:DAAA02028746 IPI:IPI00924381
Ensembl:ENSBTAT00000061038 ArrayExpress:F1MNS0 Uniprot:F1MNS0
Length = 4857
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 49 SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIA 107
S G HS V +G+L+ WG+GD GRLG G ++ +PTL + + V ++ G H+IA
Sbjct: 517 SAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN-VGEVSCGSSHTIA 575
Query: 108 LT 109
L+
Sbjct: 576 LS 577
>UNIPROTKB|F1S098 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR017986 InterPro:IPR000569 InterPro:IPR001680
InterPro:IPR003877 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 INTERPRO:IPR000408 Pfam:PF00415 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016567
GO:GO:0005622 InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 SUPFAM:SSF56204
CTD:8925 KO:K10594 OMA:HHYQDGI GeneTree:ENSGT00700000104312
EMBL:CU550694 EMBL:CU582937 RefSeq:XP_001927286.4 UniGene:Ssc.96208
UniGene:Ssc.97542 Ensembl:ENSSSCT00000005038 GeneID:100153537
KEGG:ssc:100153537 Uniprot:F1S098
Length = 4859
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 49 SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIA 107
S G HS V +G+L+ WG+GD GRLG G ++ +PTL + + V ++ G H+IA
Sbjct: 517 SAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN-VGEVSCGSSHTIA 575
Query: 108 LT 109
L+
Sbjct: 576 LS 577
>UNIPROTKB|Q15751 [details] [associations]
symbol:HERC1 "Probable E3 ubiquitin-protein ligase HERC1"
species:9606 "Homo sapiens" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005086 "ARF
guanyl-nucleotide exchange factor activity" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=TAS] Pfam:PF00632
InterPro:IPR017986 InterPro:IPR000569 InterPro:IPR001680
InterPro:IPR003877 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005829 GO:GO:0005794 GO:GO:0016020 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006810
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0005086
SUPFAM:SSF56204 eggNOG:COG5021 EMBL:U50078 EMBL:AC073167
EMBL:AC118274 EMBL:BC040929 IPI:IPI00022479 PIR:S71752
RefSeq:NP_003913.3 UniGene:Hs.210385 HSSP:Q922Y1
ProteinModelPortal:Q15751 SMR:Q15751 IntAct:Q15751 STRING:Q15751
PhosphoSite:Q15751 DMDM:296434522 PaxDb:Q15751 PRIDE:Q15751
Ensembl:ENST00000443617 GeneID:8925 KEGG:hsa:8925 UCSC:uc002amp.3
CTD:8925 GeneCards:GC15M063900 HGNC:HGNC:4867 HPA:HPA049749
MIM:605109 neXtProt:NX_Q15751 PharmGKB:PA29242 HOGENOM:HOG000168589
HOVERGEN:HBG053919 InParanoid:Q15751 KO:K10594 OMA:HHYQDGI
OrthoDB:EOG40GCPW GenomeRNAi:8925 NextBio:33556 ArrayExpress:Q15751
Bgee:Q15751 CleanEx:HS_HERC1 Genevestigator:Q15751 Uniprot:Q15751
Length = 4861
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 49 SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIA 107
S G HS V +G+L+ WG+GD GRLG G ++ +PTL + + V ++ G H+IA
Sbjct: 517 SAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN-VGEVSCGSSHTIA 575
Query: 108 LT 109
L+
Sbjct: 576 LS 577
>UNIPROTKB|E1C4H7 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00632 InterPro:IPR017986
InterPro:IPR000569 InterPro:IPR001680 InterPro:IPR003877
InterPro:IPR015880 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 SMART:SM00355 INTERPRO:IPR000408 Pfam:PF00415
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0008270 GO:GO:0016567 GO:GO:0005622
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 SUPFAM:SSF56204
OMA:HHYQDGI GeneTree:ENSGT00700000104312 EMBL:AADN02040444
EMBL:AADN02040445 EMBL:AADN02040446 IPI:IPI00593079
Ensembl:ENSGALT00000005344 Uniprot:E1C4H7
Length = 4863
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 49 SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIA 107
S G HS V +G+L+ WG+GD GRLG G ++ +PTL + + V ++ G H+IA
Sbjct: 517 SAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN-VGEVSCGSSHTIA 575
Query: 108 LT 109
L+
Sbjct: 576 LS 577
>UNIPROTKB|E2QYQ5 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR017986 InterPro:IPR000569
InterPro:IPR001680 InterPro:IPR003877 InterPro:IPR015943
Pfam:PF00400 Pfam:PF00622 PROSITE:PS50082 PROSITE:PS50237
PROSITE:PS50294 SMART:SM00119 SMART:SM00320 INTERPRO:IPR000408
Pfam:PF00415 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0016567 GO:GO:0005622 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 SUPFAM:SSF56204 OMA:HHYQDGI
GeneTree:ENSGT00700000104312 EMBL:AAEX03016202
Ensembl:ENSCAFT00000026962 Uniprot:E2QYQ5
Length = 4863
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 49 SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIA 107
S G HS V +G+L+ WG+GD GRLG G ++ +PTL + + V ++ G H+IA
Sbjct: 517 SAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN-VGEVSCGSSHTIA 575
Query: 108 LT 109
L+
Sbjct: 576 LS 577
>MGI|MGI:1919784 [details] [associations]
symbol:Rcc2 "regulator of chromosome condensation 2"
species:10090 "Mus musculus" [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0051301 "cell division"
evidence=IEA] MGI:MGI:1919784 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005737 GO:GO:0000775 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GO:GO:0005819 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0005874 PRINTS:PR00633 PROSITE:PS00625
PROSITE:PS00626 PROSITE:PS50012 EMBL:AL954710 eggNOG:COG5184
GeneTree:ENSGT00700000104160 CTD:55920 HOGENOM:HOG000232061
HOVERGEN:HBG080538 OMA:FGENKLG OrthoDB:EOG4DNF4B EMBL:AK076040
EMBL:BC086666 EMBL:AK129370 IPI:IPI00222509 RefSeq:NP_776292.1
UniGene:Mm.253 ProteinModelPortal:Q8BK67 SMR:Q8BK67 STRING:Q8BK67
PhosphoSite:Q8BK67 PaxDb:Q8BK67 PRIDE:Q8BK67
Ensembl:ENSMUST00000038893 Ensembl:ENSMUST00000071169 GeneID:108911
KEGG:mmu:108911 UCSC:uc008vna.2 InParanoid:A2AWQ3 ChiTaRS:RCC2
NextBio:361459 Bgee:Q8BK67 CleanEx:MM_RCC2 Genevestigator:Q8BK67
GermOnline:ENSMUSG00000040945 Uniprot:Q8BK67
Length = 520
Score = 96 (38.9 bits), Expect = 0.00058, P = 0.00058
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 47 SSSCGLFHSGLVVN-GKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLD-DHVRCIALGGVH 104
S SC HS L+ GKLW WG+ + G+LG G P L L + + A G H
Sbjct: 153 SGSCAA-HSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEALSHEAIVLAACGRNH 211
Query: 105 SIALT 109
++ALT
Sbjct: 212 TLALT 216
>TAIR|locus:2079147 [details] [associations]
symbol:AT3G47660 "AT3G47660" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0008536
"Ran GTPase binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000306 Pfam:PF01363 SMART:SM00064
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002686 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0046872 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 Gene3D:3.30.40.10
InterPro:IPR017455 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 PROSITE:PS50178 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 IPI:IPI00548806 RefSeq:NP_190350.4 UniGene:At.48747
UniGene:At.66547 ProteinModelPortal:F4JCN3 SMR:F4JCN3 PRIDE:F4JCN3
EnsemblPlants:AT3G47660.1 GeneID:823920 KEGG:ath:AT3G47660
OMA:CLSHEIS ArrayExpress:F4JCN3 Uniprot:F4JCN3
Length = 954
Score = 99 (39.9 bits), Expect = 0.00059, P = 0.00059
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 48 SSCGLFHSGLVVN--------GKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCI 98
++CG++HS VV+ GKL+ WG GD GRLG G + +P+ LD + +
Sbjct: 463 AACGVWHSAAVVSVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPSCVTELDTTSFQQV 522
Query: 99 ALGGVHSIALT 109
A G ++AL+
Sbjct: 523 ACGQSITVALS 533
>RGD|1561739 [details] [associations]
symbol:Herc6 "HECT and RLD domain containing E3 ubiquitin
protein ligase family member 6" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237
SMART:SM00119 RGD:1561739 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0042787 SUPFAM:SSF56204 eggNOG:COG5021
HOGENOM:HOG000208452 HOVERGEN:HBG050878 OrthoDB:EOG4N30N6
IPI:IPI00553869 EMBL:BC085921 UniGene:Rn.107120
ProteinModelPortal:Q5U2P8 PhosphoSite:Q5U2P8 UCSC:RGD:1561739
InParanoid:Q5U2P8 ArrayExpress:Q5U2P8 Genevestigator:Q5U2P8
Uniprot:Q5U2P8
Length = 1034
Score = 99 (39.9 bits), Expect = 0.00064, P = 0.00064
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 49 SCGLFHSGLVVN-GKLWIWGKGDGGRLGFGH-EDAAFVPT-LNPYLDDHVRCIALGGVHS 105
SCG HS V + G+++ WG G G+LG G ++ +F+PT +N + ++ G HS
Sbjct: 86 SCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHS 145
Query: 106 IALT 109
+AL+
Sbjct: 146 LALS 149
>UNIPROTKB|F1LPM8 [details] [associations]
symbol:Herc6 "Protein Herc6" species:10116 "Rattus
norvegicus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
RGD:1561739 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 SUPFAM:SSF56204 GeneTree:ENSGT00660000095216
EMBL:AC126722 IPI:IPI00553869 Ensembl:ENSRNOT00000058626
ArrayExpress:F1LPM8 Uniprot:F1LPM8
Length = 1036
Score = 99 (39.9 bits), Expect = 0.00064, P = 0.00064
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 49 SCGLFHSGLVVN-GKLWIWGKGDGGRLGFGH-EDAAFVPT-LNPYLDDHVRCIALGGVHS 105
SCG HS V + G+++ WG G G+LG G ++ +F+PT +N + ++ G HS
Sbjct: 87 SCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHS 146
Query: 106 IALT 109
+AL+
Sbjct: 147 LALS 150
>UNIPROTKB|E1BW48 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0020037
"heme binding" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005743 "mitochondrial inner membrane" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0031625 "ubiquitin protein
ligase binding" evidence=IEA] [GO:0032183 "SUMO binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF00569 Pfam:PF06701 PROSITE:PS01357
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS51416
SMART:SM00119 SMART:SM00291 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 SUPFAM:SSF46934 Gene3D:2.30.30.30
InterPro:IPR021097 InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 OMA:QLAFTRD EMBL:AADN02017653
IPI:IPI00571031 Ensembl:ENSGALT00000027018 ArrayExpress:E1BW48
Uniprot:E1BW48
Length = 4841
Score = 103 (41.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 11 FSLMAEEALV-VRLFNSEN-SPNWNQ-LANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWG 67
F +++ V + +NS+ P Q LA+ ++ K ++S G + L NG+++ WG
Sbjct: 464 FLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIAAHSD--GHHYLALSANGEVFSWG 521
Query: 68 KGDGGRLGFGH----EDAAFVPTLN-PYLDDHVRCIALGGVHSIALTS 110
GDGGRLG G E+ + L+ HV IA G +S A+T+
Sbjct: 522 CGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACGSTYSAAITA 569
Score = 33 (16.7 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 117 NRCLILGEEEKR 128
+ C+I+G+ E+R
Sbjct: 3453 DECMIVGDIEER 3464
>UNIPROTKB|E1C8K2 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF00569 Pfam:PF06701 PROSITE:PS01357
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS51416
SMART:SM00119 SMART:SM00291 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0046872 GO:GO:0008270 GO:GO:0020037 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 EMBL:AADN02017653 IPI:IPI00818548
Ensembl:ENSGALT00000036596 ArrayExpress:E1C8K2 Uniprot:E1C8K2
Length = 4841
Score = 103 (41.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 11 FSLMAEEALV-VRLFNSEN-SPNWNQ-LANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWG 67
F +++ V + +NS+ P Q LA+ ++ K ++S G + L NG+++ WG
Sbjct: 464 FLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIAAHSD--GHHYLALSANGEVFSWG 521
Query: 68 KGDGGRLGFGH----EDAAFVPTLN-PYLDDHVRCIALGGVHSIALTS 110
GDGGRLG G E+ + L+ HV IA G +S A+T+
Sbjct: 522 CGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACGSTYSAAITA 569
Score = 33 (16.7 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 117 NRCLILGEEEKR 128
+ C+I+G+ E+R
Sbjct: 3453 DECMIVGDIEER 3464
>UNIPROTKB|F1NUG6 [details] [associations]
symbol:Gga.50841 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005929
"cilium" evidence=IEA] [GO:0007601 "visual perception"
evidence=IEA] [GO:0042462 "eye photoreceptor cell development"
evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737
GO:GO:0005929 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GeneTree:ENSGT00700000104160 EMBL:AADN02011054 IPI:IPI00586770
Ensembl:ENSGALT00000026211 OMA:ENGLMFT Uniprot:F1NUG6
Length = 720
Score = 97 (39.2 bits), Expect = 0.00068, P = 0.00068
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 38 LSVSKRFSNSSSCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLD--DH 94
+ V K S S SCG +HS + +G+L+ +G+ + G+LG E P L +
Sbjct: 188 VDVGKPVS-SISCGYYHSAFITGDGELYTFGEPENGKLGLLPEQLKNSRVPQPVLGIMEK 246
Query: 95 VRCIALGGVHSIALTSLAV 113
V +A GG H++ LT V
Sbjct: 247 VNKVACGGEHTVVLTETGV 265
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 131 131 0.00091 102 3 11 22 0.41 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 589 (63 KB)
Total size of DFA: 149 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.38u 0.23s 12.61t Elapsed: 00:00:00
Total cpu time: 12.39u 0.23s 12.62t Elapsed: 00:00:00
Start: Fri May 10 13:29:47 2013 End: Fri May 10 13:29:47 2013