BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035899
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 34.3 bits (77), Expect = 0.021, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 25 NSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNG--KLWIWGKGDGGRLGFGHEDAA 82
++E+ P+ QL+ L + S +CG H+ +++ WG GD GRLG G+
Sbjct: 52 DAEDRPSPTQLSALDGHQIVS--VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL 109
Query: 83 FVPTLNPYLDD-HVRCIALGGVHSIALT 109
F P L ++ IA G H +A+T
Sbjct: 110 FTPLPIKALHGIRIKQIACGDSHCLAVT 137
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 49 SCGLFHSGLVVNGKLWI-WGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
S G HS +++G + WG+G+ G+LG G + PT LD H + + G H++
Sbjct: 22 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 81
Query: 107 ALTSLAVE 114
A + +E
Sbjct: 82 AYSQSGME 89
Score = 33.1 bits (74), Expect = 0.042, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVP-TLNPYLDDHVRCIALGGVHSI 106
+CG H + + G++ WG+ G+LG G + + VP + + ++ +A G H+
Sbjct: 127 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 186
Query: 107 ALT 109
A+T
Sbjct: 187 AVT 189
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 39 SVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VR 96
++S F + S G H+ L +GKL+ WG G++G G+ P + DD V
Sbjct: 273 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 332
Query: 97 CIALGGVHSIALT 109
++ G H++A+T
Sbjct: 333 QVSCGWRHTLAVT 345
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 49 SCGLFHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPT-LNPYLDDHVRCIALGGVHSI 106
+ G H+ V +G L+ WG G G LG G VP + + + +A G H+I
Sbjct: 179 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 238
Query: 107 ALT 109
+++
Sbjct: 239 SVS 241
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 49 SCGLFHSGLVVN-GKLWIWGKGDGGRLGFG 77
SCG H+ V ++ WG+G G+LG G
Sbjct: 335 SCGWRHTLAVTERNNVFAWGRGTNGQLGIG 364
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 50 CG-LFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVP-TLNPYLDDHVRCIALGGVHSIA 107
CG F L +G ++ WGKGD RLG G +D P + V IA G +H +
Sbjct: 272 CGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVC 331
Query: 108 LT 109
T
Sbjct: 332 CT 333
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 57 LVVNGKLWIWGKGDGGRLGFGHEDAAFVP 85
L + +W WG GD G+LG G D VP
Sbjct: 228 LTDDDTVWSWGDGDYGKLGRGGSDGCKVP 256
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 49 SCGLFHSGLVVN-GKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH 94
+ G HS V G L+ WGKG GRLG + P L L H
Sbjct: 165 AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 60 NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLD-DHVRCIALGGVHSIALTS 110
+G+++ WG D G+LG G +A P L L V +A G H++A ++
Sbjct: 335 DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWST 386
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 57 LVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCI-----ALGGVHSIALTS 110
L G+++ WG+ + G+LG G+ P P + + +R I A GG HS +T+
Sbjct: 122 LSSEGEVYSWGEAEDGKLGHGNRS----PCDRPRVIESLRGIEVVDVAAGGAHSACVTA 176
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 25 NSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNG--KLWIWGKGDGGRLGFGHEDAA 82
++E+ P+ QL+ L + S +CG H+ +++ WG GD GRLG G+
Sbjct: 40 DAEDRPSPTQLSALDGHQIVS--VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL 97
Query: 83 FVP-TLNPYLDDHVRCIALGGVHSIALT 109
F P + ++ IA G H +A+T
Sbjct: 98 FTPLPIKALHGIRIKQIACGDSHCLAVT 125
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 49 SCGLFHSGLVVNGKLWI-WGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
S G HS +++G + WG+G+ G+LG G + PT LD H + + G H++
Sbjct: 10 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 69
Query: 107 ALTSLAVE 114
A + +E
Sbjct: 70 AYSQSGME 77
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPT-LNPYLDDHVRCIALGGVHSI 106
+CG H + + G++ WG+ G+LG G + + VP + + ++ +A G H+
Sbjct: 115 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 174
Query: 107 ALT 109
A+T
Sbjct: 175 AVT 177
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 39 SVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VR 96
++S F + S G H+ L +GKL+ WG G++G G+ P + DD V
Sbjct: 261 ALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 320
Query: 97 CIALGGVHSIALT 109
++ G H++A+T
Sbjct: 321 QVSCGWRHTLAVT 333
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 25 NSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNG--KLWIWGKGDGGRLGFGHEDAA 82
++E+ P+ QL+ L + S +CG H+ +++ WG GD GRLG G+
Sbjct: 42 DAEDRPSPTQLSALDGHQIVS--VTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDL 99
Query: 83 FVP-TLNPYLDDHVRCIALGGVHSIALT 109
F P + ++ IA G H +A+T
Sbjct: 100 FTPLPIKALHGIRIKQIACGDSHCLAVT 127
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 49 SCGLFHSGLVVNGKLWI-WGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
S G HS +++G + WG+G+ G+LG G + PT LD H + + G H++
Sbjct: 12 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 71
Query: 107 ALTSLAVE 114
A + E
Sbjct: 72 AYSQSGXE 79
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPT-LNPYLDDHVRCIALGGVHSI 106
+CG H + G++ WG+ G+LG G + + VP + + ++ +A G H+
Sbjct: 117 ACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTA 176
Query: 107 ALT 109
A+T
Sbjct: 177 AVT 179
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 39 SVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VR 96
++S F + S G H+ L +GKL+ WG G++G G+ P + DD V
Sbjct: 263 ALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 322
Query: 97 CIALGGVHSIALT 109
++ G H++A+T
Sbjct: 323 QVSCGWRHTLAVT 335
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 25 NSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNG--KLWIWGKGDGGRLGFGHEDAA 82
++E+ P+ QL+ L + S +CG H+ +++ WG GD GRLG G+
Sbjct: 40 DAEDRPSPTQLSALDGHQIVS--VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL 97
Query: 83 FVP-TLNPYLDDHVRCIALGGVHSIALT 109
F P + ++ IA G H +A+T
Sbjct: 98 FTPLPIKALHGIRIKQIACGDSHCLAVT 125
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 49 SCGLFHSGLVVNGKLWI-WGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VRCIALGGVHSI 106
S G HS +++G + WG+G+ G+LG G + PT LD H + + G H++
Sbjct: 10 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 69
Query: 107 ALTSLAVE 114
A + +E
Sbjct: 70 AYSQSGME 77
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 49 SCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPT-LNPYLDDHVRCIALGGVHSI 106
+CG H + + G++ WG+ G+LG G + + VP + + ++ +A G H+
Sbjct: 115 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 174
Query: 107 ALT 109
A+T
Sbjct: 175 AVT 177
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 39 SVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDH-VR 96
++S F + S G H+ L +GKL+ WG G++G G+ P + DD V
Sbjct: 261 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 320
Query: 97 CIALGGVHSIALT 109
++ G H++A+T
Sbjct: 321 QVSCGWRHTLAVT 333
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 47 SSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTL---NPYLDDHVRCIALGG 102
S CG S + ++GKL+ WG G +LG G D P + H+ + GG
Sbjct: 350 SVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGG 409
Query: 103 VHSIAL 108
H+I L
Sbjct: 410 QHAIFL 415
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 59 VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPY--LDDHVRCIALGGVHSIALT 109
V G + + G GD G+LG G ED L+P + D V I+ GG+H++ LT
Sbjct: 41 VLGNVLVCGNGDVGQLGLG-EDILERKRLSPVAGIPDAVD-ISAGGMHNLVLT 91
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 38 LSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRC 97
++ ++ N LF G+ +N ++WI G G R G+ +FV L PYL +
Sbjct: 74 FTIPSKWKNKKVQILFE-GVYLNSEVWINGHWLGKRPN-GY--ISFVYDLTPYLQEGKNQ 129
Query: 98 IALGGVHSIALT 109
IA+ HS ALT
Sbjct: 130 IAVKVDHSKALT 141
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 60 NGKLWIWGKGDGGRLGFGHEDAAFVPT--LNPYLDDH-VRCIALGGVHSIAL 108
+G+++ WG G +LG G ++ A+ P + L++ V ++ GG H++ L
Sbjct: 355 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 60 NGKLWIWGKGDGGRLGFGHEDAAFVPT--LNPYLDDH-VRCIALGGVHSIAL 108
+G+++ WG G +LG G ++ A+ P + L++ V ++ GG H++ L
Sbjct: 344 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 395
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
pdb|3T0F|B Chain B, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
Length = 328
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 222 LAEQAEVVLVVGSKNSSNSNRLAELA 247
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant
pdb|3SZU|B Chain B, Isph:hmbpp Complex Structure Of E126q Mutant
Length = 328
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 222 LAEQAEVVLVVGSKNSSNSNRLAELA 247
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3F7T|B Chain B, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3SZL|A Chain A, Isph:ligand Mutants - Wt 70sec
pdb|3SZL|B Chain B, Isph:ligand Mutants - Wt 70sec
pdb|3SZO|A Chain A, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
pdb|3SZO|B Chain B, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
Length = 328
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 222 LAEQAEVVLVVGSKNSSNSNRLAELA 247
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGL|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
Length = 332
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 226 LAEQAEVVLVVGSKNSSNSNRLAELA 251
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp
pdb|4EB3|B Chain B, Crystal Structure Of Isph In Complex With Iso-hmbpp
Length = 327
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 222 LAEQAEVVLVVGSKNSSNSNRLAELA 247
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
pdb|3T0G|B Chain B, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
Length = 328
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 222 LAEQAEVVLVVGSKNSSNSNRLAELA 247
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE8|B Chain B, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE9|A Chain A, Crystal Structure Of Isph:intermediate-Complex
pdb|3KE9|B Chain B, Crystal Structure Of Isph:intermediate-Complex
pdb|3KEF|A Chain A, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEF|B Chain B, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEL|A Chain A, Crystal Structure Of Isph:pp Complex
pdb|3KEL|B Chain B, Crystal Structure Of Isph:pp Complex
pdb|3KEM|A Chain A, Crystal Structure Of Isph:ipp Complex
pdb|3KEM|B Chain B, Crystal Structure Of Isph:ipp Complex
Length = 326
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 220 LAEQAEVVLVVGSKNSSNSNRLAELA 245
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4C|B Chain B, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|A Chain A, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|B Chain B, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|A Chain A, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|B Chain B, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
Length = 323
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 218 LAEQAEVVLVVGSKNSSNSNRLAELA 243
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3URK|B Chain B, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3UTC|A Chain A, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTC|B Chain B, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTD|A Chain A, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UTD|B Chain B, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UV3|A Chain A, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV3|B Chain B, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV6|A Chain A, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV6|B Chain B, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV7|A Chain A, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UV7|B Chain B, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UWM|A Chain A, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
pdb|3UWM|B Chain B, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
Length = 324
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 14 MAEEALVVRLFNSENSPNWNQLANLS 39
+AE+A VV + S+NS N N+LA L+
Sbjct: 218 LAEQAEVVLVVGSKNSSNSNRLAELA 243
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 61 GKLWIWGKGDGGRLGFGHEDAAFVPTLN--PYLDDHVRCIALGGVHSIALT 109
G ++ WG G +LG + + TL+ P+ HV+ IA G H ALT
Sbjct: 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALT 273
>pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
pdb|3UET|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
Length = 478
Score = 26.2 bits (56), Expect = 6.1, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 31 NWNQLANLSVSKR---FSNSSSCGLFHSGL-VVNGKLWIWGKGDGGRLGFGHEDAAFVPT 86
N N LAN+ S R + H G+ + + W G GHED A
Sbjct: 10 NLNYLANVRPSSRQLAWQRMEMYAFLHFGMNTMTDREW----------GLGHEDPALFNP 59
Query: 87 LNPYLDDHVRCIALGGVHSIALT 109
N +D + + GG+ + LT
Sbjct: 60 RNVDVDQWMDALVAGGMAGVILT 82
>pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
pdb|3UES|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
Length = 478
Score = 26.2 bits (56), Expect = 6.1, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 31 NWNQLANLSVSKR---FSNSSSCGLFHSGL-VVNGKLWIWGKGDGGRLGFGHEDAAFVPT 86
N N LAN+ S R + H G+ + + W G GHED A
Sbjct: 10 NLNYLANVRPSSRQLAWQRMEMYAFLHFGMNTMTDREW----------GLGHEDPALFNP 59
Query: 87 LNPYLDDHVRCIALGGVHSIALT 109
N +D + + GG+ + LT
Sbjct: 60 RNVDVDQWMDALVAGGMAGVILT 82
>pdb|1NMB|N Chain N, The Structure Of A Complex Between The Nc10 Antibody And
Influenza Virus Neuraminidase And Comparison With The
Overlapping Binding Site Of The Nc41 Antibody
Length = 470
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 25 NSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFV 84
N N N Q++N ++ S GL I+GK + R+G ED+ +
Sbjct: 60 NYYNETNITQISNTNIQVEERASREFNNLTKGLCTINSWHIYGKDNAVRIG---EDSDVL 116
Query: 85 PTLNPYLD---DHVRCIAL 100
T PY+ D R AL
Sbjct: 117 VTREPYVSCDPDECRFYAL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,041,929
Number of Sequences: 62578
Number of extensions: 161017
Number of successful extensions: 449
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 60
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)