Query 035899
Match_columns 131
No_of_seqs 224 out of 1646
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 99.9 9.6E-23 2.1E-27 154.7 7.8 115 13-127 73-262 (443)
2 COG5184 ATS1 Alpha-tubulin sup 99.8 1E-18 2.2E-23 138.7 8.8 118 10-127 188-318 (476)
3 COG5184 ATS1 Alpha-tubulin sup 99.8 9E-18 2E-22 133.4 11.1 119 6-125 292-424 (476)
4 KOG1427 Uncharacterized conser 99.7 7.9E-18 1.7E-22 128.1 5.1 87 40-126 53-143 (443)
5 PF00415 RCC1: Regulator of ch 99.7 1.3E-16 2.9E-21 92.0 4.6 49 60-108 1-51 (51)
6 KOG0783 Uncharacterized conser 99.6 3.8E-16 8.3E-21 130.7 6.1 113 13-125 138-261 (1267)
7 KOG1428 Inhibitor of type V ad 99.6 1E-14 2.2E-19 126.9 9.1 82 44-125 768-854 (3738)
8 KOG0783 Uncharacterized conser 99.5 6.5E-14 1.4E-18 117.5 8.2 112 15-127 194-320 (1267)
9 PF13540 RCC1_2: Regulator of 99.4 8.9E-13 1.9E-17 68.2 3.7 30 95-124 1-30 (30)
10 PF13540 RCC1_2: Regulator of 99.3 2.2E-12 4.8E-17 66.8 4.3 29 45-73 1-30 (30)
11 KOG1428 Inhibitor of type V ad 99.2 1E-10 2.2E-15 102.8 8.5 33 94-126 768-800 (3738)
12 KOG0941 E3 ubiquitin protein l 99.0 5E-11 1.1E-15 100.2 -1.5 85 43-127 14-107 (850)
13 PF00415 RCC1: Regulator of ch 98.9 5.4E-09 1.2E-13 59.8 5.0 43 16-58 1-51 (51)
14 KOG0941 E3 ubiquitin protein l 98.5 2.8E-09 6E-14 89.9 -4.0 111 13-123 29-156 (850)
15 KOG3669 Uncharacterized conser 92.8 1.9 4.1E-05 36.5 10.2 104 6-116 191-298 (705)
16 PRK02529 petN cytochrome b6-f 86.4 0.65 1.4E-05 23.9 1.8 20 8-31 13-32 (33)
17 KOG0649 WD40 repeat protein [G 83.2 13 0.00027 28.6 8.1 15 59-73 79-93 (325)
18 smart00706 TECPR Beta propelle 80.8 3.7 7.9E-05 21.0 3.4 24 94-117 9-33 (35)
19 PF07569 Hira: TUP1-like enhan 80.5 2.3 5.1E-05 31.4 3.5 26 94-119 14-39 (219)
20 PF07646 Kelch_2: Kelch motif; 79.7 2.2 4.7E-05 23.5 2.4 17 53-69 4-20 (49)
21 PF13964 Kelch_6: Kelch motif 77.9 2.7 5.9E-05 23.0 2.5 19 53-71 4-22 (50)
22 PLN02772 guanylate kinase 76.2 14 0.0003 30.1 6.8 63 52-120 26-95 (398)
23 PF13854 Kelch_5: Kelch motif 72.8 4.7 0.0001 21.5 2.5 18 53-70 7-24 (42)
24 KOG0943 Predicted ubiquitin-pr 71.9 3.9 8.5E-05 38.0 3.0 74 44-117 375-453 (3015)
25 PF01344 Kelch_1: Kelch motif; 68.1 8 0.00017 20.5 2.8 16 53-68 4-19 (47)
26 PF13418 Kelch_4: Galactose ox 61.5 9.9 0.00021 20.5 2.4 16 103-118 4-19 (49)
27 PF10168 Nup88: Nuclear pore c 60.7 1.2E+02 0.0026 26.7 10.2 24 94-117 148-176 (717)
28 PHA03098 kelch-like protein; P 56.0 1.1E+02 0.0023 25.2 8.5 17 53-69 335-351 (534)
29 KOG0315 G-protein beta subunit 54.5 1E+02 0.0022 23.9 9.2 66 45-120 127-197 (311)
30 PF06739 SBBP: Beta-propeller 54.3 13 0.00027 19.6 1.9 17 103-119 15-31 (38)
31 PHA02713 hypothetical protein; 53.7 87 0.0019 26.3 7.7 17 53-69 344-360 (557)
32 PF07250 Glyoxal_oxid_N: Glyox 53.0 60 0.0013 24.5 6.0 106 14-120 75-189 (243)
33 KOG0943 Predicted ubiquitin-pr 49.9 1.4 3E-05 40.7 -3.6 107 12-123 388-508 (3015)
34 KOG0315 G-protein beta subunit 49.8 1.2E+02 0.0026 23.5 9.4 28 43-70 168-198 (311)
35 PF13938 DUF4213: Domain of un 47.1 25 0.00053 21.9 2.7 21 94-114 13-33 (87)
36 CHL00009 petN cytochrome b6/f 47.1 13 0.00027 18.7 1.1 15 8-26 14-28 (29)
37 PF01436 NHL: NHL repeat; Int 46.4 31 0.00067 16.6 2.5 18 103-120 4-21 (28)
38 PHA02146 hypothetical protein 46.3 21 0.00046 21.8 2.2 30 98-127 23-53 (86)
39 PRK14747 cytochrome b6-f compl 45.6 8.7 0.00019 19.2 0.4 15 8-26 14-28 (29)
40 KOG4693 Uncharacterized conser 44.4 44 0.00095 26.2 4.1 65 52-119 242-310 (392)
41 KOG3669 Uncharacterized conser 44.1 75 0.0016 27.4 5.7 56 9-65 239-298 (705)
42 TIGR03548 mutarot_permut cycli 43.7 44 0.00095 25.5 4.2 18 53-70 116-133 (323)
43 PF15525 DUF4652: Domain of un 41.5 35 0.00076 25.0 3.1 56 61-117 88-145 (200)
44 PF07569 Hira: TUP1-like enhan 40.8 67 0.0014 23.6 4.6 28 43-70 13-41 (219)
45 PF03785 Peptidase_C25_C: Pept 38.1 51 0.0011 20.7 3.0 25 94-118 17-42 (81)
46 PF12341 DUF3639: Protein of u 34.8 62 0.0013 15.9 3.3 21 94-114 3-23 (27)
47 PF06204 CBM_X: Putative carbo 32.8 1.1E+02 0.0024 18.2 4.7 27 94-120 26-52 (66)
48 PLN02153 epithiospecifier prot 32.7 2.3E+02 0.005 21.8 6.9 16 53-68 186-201 (341)
49 PLN02193 nitrile-specifier pro 31.9 2.9E+02 0.0062 22.6 10.0 17 53-69 271-287 (470)
50 PF11399 DUF3192: Protein of u 31.2 40 0.00087 22.1 1.9 20 54-73 81-101 (102)
51 KOG1034 Transcriptional repres 29.8 1.6E+02 0.0036 23.6 5.3 53 59-119 327-382 (385)
52 KOG0316 Conserved WD40 repeat- 29.8 1.6E+02 0.0035 22.7 5.1 29 38-66 265-296 (307)
53 KOG1034 Transcriptional repres 28.4 1.6E+02 0.0036 23.6 5.1 53 4-68 327-382 (385)
54 PF07312 DUF1459: Protein of u 26.9 44 0.00094 20.9 1.4 13 61-73 56-69 (84)
55 TIGR03547 muta_rot_YjhT mutatr 26.5 1.8E+02 0.0039 22.3 5.1 15 54-68 251-265 (346)
56 KOG0289 mRNA splicing factor [ 25.7 1.8E+02 0.0039 24.2 5.0 67 53-120 350-419 (506)
57 PF11725 AvrE: Pathogenicity f 25.3 2.3E+02 0.0051 27.6 6.2 121 1-123 377-519 (1774)
58 KOG1274 WD40 repeat protein [G 25.1 5.3E+02 0.012 23.5 10.6 67 39-124 520-588 (933)
59 PF13953 PapC_C: PapC C-termin 24.6 1.3E+02 0.0029 17.5 3.3 19 4-22 30-48 (68)
60 cd00265 MADS_MEF2_like MEF2 (m 24.4 1E+02 0.0022 18.8 2.8 24 47-70 35-60 (77)
61 PHA02790 Kelch-like protein; P 24.1 1E+02 0.0022 25.3 3.5 17 53-69 355-371 (480)
62 PF13570 PQQ_3: PQQ-like domai 23.1 1.1E+02 0.0024 15.6 2.4 20 99-118 18-37 (40)
63 PRK14131 N-acetylneuraminic ac 22.1 3.2E+02 0.0069 21.4 5.9 16 54-69 215-230 (376)
64 PF08735 DUF1786: Putative pyr 22.1 1.5E+02 0.0032 22.7 3.7 24 43-66 167-192 (254)
65 PHA03092 semaphorin-like prote 21.6 2.2E+02 0.0047 19.2 4.0 31 59-89 40-70 (134)
66 PF08887 GAD-like: GAD-like do 21.5 86 0.0019 20.6 2.1 21 101-121 78-98 (109)
67 PF13186 SPASM: Iron-sulfur cl 21.3 76 0.0017 17.5 1.7 14 53-66 6-19 (64)
68 PF05717 TnpB_IS66: IS66 Orf2 20.8 1.9E+02 0.004 18.9 3.6 27 4-30 33-59 (107)
69 PF06462 Hyd_WA: Propeller; I 20.1 1.3E+02 0.0027 15.1 2.2 14 10-23 3-16 (32)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.88 E-value=9.6e-23 Score=154.74 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=93.3
Q ss_pred ecCCCeEEEEecCCCCCCCCCCCCceecC-------CCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCC---
Q 035899 13 LMAEEALVVRLFNSENSPNWNQLANLSVS-------KRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDA--- 81 (131)
Q Consensus 13 ~~~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~--- 81 (131)
+.-++..+.||.|..||||+.+.....-| ..+|++.|||++|+ +|+++|.||+||.|.+||||+++...
T Consensus 73 i~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~ 152 (443)
T KOG1427|consen 73 IDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVE 152 (443)
T ss_pred EecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccc
Confidence 44578889999999999999976543322 35688999999999 57789999999999999999987321
Q ss_pred ---------------------------------------------------------------eeeeEEcCCCCC-ceEE
Q 035899 82 ---------------------------------------------------------------AFVPTLNPYLDD-HVRC 97 (131)
Q Consensus 82 ---------------------------------------------------------------~~~P~~v~~l~~-~i~~ 97 (131)
++.|..|..+.+ .|++
T Consensus 153 s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~ 232 (443)
T KOG1427|consen 153 STPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVK 232 (443)
T ss_pred cCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEE
Confidence 123445556666 8999
Q ss_pred EeccccceEEEecCCcEEEecCCCCCCccc
Q 035899 98 IALGGVHSIALTSLAVEECNRCLILGEEEK 127 (131)
Q Consensus 98 ia~G~~hs~~lt~~g~vy~wG~~~~G~~~~ 127 (131)
+|||.+|+++++++++||+||.|-|||...
T Consensus 233 ~acg~nhtvavd~nkrVysWGFGGyGRLGH 262 (443)
T KOG1427|consen 233 VACGTNHTVAVDKNKRVYSWGFGGYGRLGH 262 (443)
T ss_pred EeccCcceeeecCCccEEEecccccccccc
Confidence 999999999999999999999999988544
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.77 E-value=1e-18 Score=138.75 Aligned_cols=118 Identities=20% Similarity=0.164 Sum_probs=92.4
Q ss_pred EEEecCCCeEEEEecCCCCCCCCCCC----------CceecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCC
Q 035899 10 IFSLMAEEALVVRLFNSENSPNWNQL----------ANLSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGH 78 (131)
Q Consensus 10 ~~~~~~~~~l~~~g~n~~gqlg~~~~----------~~~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~ 78 (131)
.-++.+++.+|.||....+-++.... ..+.++...|+++|+|.+|. +|+.+|++|+||+|..||||...
T Consensus 188 svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~ 267 (476)
T COG5184 188 SVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPT 267 (476)
T ss_pred EEEEccCCcEEEecCccccccccccccccccceeeeeeeecCchheeeeccCCceEEEEecCCcEEEecCCcccccCCch
Confidence 34566777888888766666655422 12334567899999999998 56779999999999999999998
Q ss_pred CCCeeeeEEcCCCCC--ceEEEeccccceEEEecCCcEEEecCCCCCCccc
Q 035899 79 EDAAFVPTLNPYLDD--HVRCIALGGVHSIALTSLAVEECNRCLILGEEEK 127 (131)
Q Consensus 79 ~~~~~~P~~v~~l~~--~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~~ 127 (131)
.+....+..++.+-. .|.+|+||.+|++||+++|+||+||.|.+||...
T Consensus 268 ~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~ 318 (476)
T COG5184 268 SERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGA 318 (476)
T ss_pred hhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhccccc
Confidence 776655555553332 6788999999999999999999999999998653
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.75 E-value=9e-18 Score=133.36 Aligned_cols=119 Identities=23% Similarity=0.122 Sum_probs=97.3
Q ss_pred ceEEEEEecCCCeEEEEecCCCCCCCCCCCCc-----------eecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCC
Q 035899 6 EELYIFSLMAEEALVVRLFNSENSPNWNQLAN-----------LSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGR 73 (131)
Q Consensus 6 ~~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~-----------~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~Gq 73 (131)
++-+++++..++.++.||.|.+||++.++-.+ .......|.++++|..|+ +|..+|.||+||++..+|
T Consensus 292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~q 371 (476)
T COG5184 292 GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQ 371 (476)
T ss_pred CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccc
Confidence 56789999999999999999999999982111 112245588999999998 566899999999999999
Q ss_pred CCCCCC--CCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 74 LGFGHE--DAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 74 LG~g~~--~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
||+.+. .....|+++.... ++.+++||..|+++.+++|+||+||.|.+|+.
T Consensus 372 lg~~~~~~~~~~~~~~ls~~~-~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnl 424 (476)
T COG5184 372 LGIQEEITIDVSTPTKLSVAI-KLEQVACGTHHNIARTDDGSVYSWGWGEHGNL 424 (476)
T ss_pred ccCcccceeecCCcccccccc-ceEEEEecCccceeeccCCceEEecCchhhhc
Confidence 999984 4445555555333 79999999999999999999999999987764
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.71 E-value=7.9e-18 Score=128.11 Aligned_cols=87 Identities=23% Similarity=0.279 Sum_probs=76.8
Q ss_pred cCCCeEEEEEccC--cceEEEe-CCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEE
Q 035899 40 VSKRFSNSSSCGL--FHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEE 115 (131)
Q Consensus 40 ~~~~~i~~is~G~--~hsal~~-~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy 115 (131)
..+..|.-|+.|. .|++|++ +|+.|+||+|+.||||+++......|+.|+.|.. +|++.|||.+||++||++|.||
T Consensus 53 l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~ 132 (443)
T KOG1427|consen 53 LVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVL 132 (443)
T ss_pred cccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEE
Confidence 3455677776664 6887665 9999999999999999999888999999999988 9999999999999999999999
Q ss_pred EecCCCCCCcc
Q 035899 116 CNRCLILGEEE 126 (131)
Q Consensus 116 ~wG~~~~G~~~ 126 (131)
.+|.|.+||..
T Consensus 133 afGeNK~GQlG 143 (443)
T KOG1427|consen 133 AFGENKYGQLG 143 (443)
T ss_pred Eeccccccccc
Confidence 99999999853
No 5
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.66 E-value=1.3e-16 Score=91.96 Aligned_cols=49 Identities=37% Similarity=0.729 Sum_probs=45.5
Q ss_pred CCeEEEEeCCCCCCCC-CCCCCCeeeeEEcCCCCC-ceEEEeccccceEEE
Q 035899 60 NGKLWIWGKGDGGRLG-FGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIAL 108 (131)
Q Consensus 60 ~G~vy~wG~n~~GqLG-~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~l 108 (131)
||+||+||.|++|||| .+.......|++|+.+.. +|++|+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 777778899999998887 899999999999997
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.63 E-value=3.8e-16 Score=130.66 Aligned_cols=113 Identities=27% Similarity=0.288 Sum_probs=93.2
Q ss_pred ecCCCeEEEEecCCCCCCCCCCCCceec---------CCCeEEEEEccCcceE-EEeCCeEEEEeCCCCCCCCCCCCCCe
Q 035899 13 LMAEEALVVRLFNSENSPNWNQLANLSV---------SKRFSNSSSCGLFHSG-LVVNGKLWIWGKGDGGRLGFGHEDAA 82 (131)
Q Consensus 13 ~~~~~~l~~~g~n~~gqlg~~~~~~~~~---------~~~~i~~is~G~~hsa-l~~~G~vy~wG~n~~GqLG~g~~~~~ 82 (131)
+.....+++||.|.+.-||+++-.+-.. ++.-+.+|+.+.+||+ ++..|+||++|-|.-|+||+|+...-
T Consensus 138 ~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~ 217 (1267)
T KOG0783|consen 138 LDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYN 217 (1267)
T ss_pred cCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccccc
Confidence 3344556666668888888876544332 2445667999999995 56799999999999999999988888
Q ss_pred eeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 83 FVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 83 ~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
+.|++|+.|.+ +|.+|+....||++||.+|.||+||.|..+|.
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqL 261 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQL 261 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCccccc
Confidence 99999999888 99999999999999999999999999877663
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.57 E-value=1e-14 Score=126.93 Aligned_cols=82 Identities=23% Similarity=0.273 Sum_probs=73.6
Q ss_pred eEEEEEccCcceEE-EeCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecC--
Q 035899 44 FSNSSSCGLFHSGL-VVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRC-- 119 (131)
Q Consensus 44 ~i~~is~G~~hsal-~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~-- 119 (131)
++.+|+||..|+++ .+|++||+||.|.+||||+|+......|++|..+.+ .+++|++|.+|++++..||.||+||.
T Consensus 768 kv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~ 847 (3738)
T KOG1428|consen 768 KVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFG 847 (3738)
T ss_pred eEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEecccc
Confidence 46789999999965 579999999999999999999999999999988887 89999999999999999999999875
Q ss_pred -CCCCCc
Q 035899 120 -LILGEE 125 (131)
Q Consensus 120 -~~~G~~ 125 (131)
|+++|+
T Consensus 848 KGQL~RP 854 (3738)
T KOG1428|consen 848 KGQLARP 854 (3738)
T ss_pred CccccCc
Confidence 555554
No 8
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.50 E-value=6.5e-14 Score=117.54 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=89.2
Q ss_pred CCCeEEEEecCCCCCCCCCCCCceecC-------CCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCC-eeee
Q 035899 15 AEEALVVRLFNSENSPNWNQLANLSVS-------KRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDA-AFVP 85 (131)
Q Consensus 15 ~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~-~~~P 85 (131)
..+++|+.|...-|.||+++.....+| +-.+++||+...|| +|+.+|-||+||.|..+|||+.+... ...|
T Consensus 194 ~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p 273 (1267)
T KOG0783|consen 194 EKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDP 273 (1267)
T ss_pred CCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCch
Confidence 788899999999999999875544433 34688999999999 67889999999999999999987543 3455
Q ss_pred EEcCCC--CC--ceEEEeccccceEEEecCCcEEEecCC--CCCCccc
Q 035899 86 TLNPYL--DD--HVRCIALGGVHSIALTSLAVEECNRCL--ILGEEEK 127 (131)
Q Consensus 86 ~~v~~l--~~--~i~~ia~G~~hs~~lt~~g~vy~wG~~--~~G~~~~ 127 (131)
++|... .+ .|+.|++|..||++-+ +-.||+||.| ++|-+..
T Consensus 274 ~qI~a~r~kg~~~iIgvaAg~~hsVawt-~~~VY~wGlN~GQlGi~~n 320 (1267)
T KOG0783|consen 274 IQITARRIKGFKQIIGVAAGKSHSVAWT-DTDVYSWGLNNGQLGISDN 320 (1267)
T ss_pred hhhhhHhhcchhhhhhhhcccceeeeee-cceEEEecccCceecCCCC
Confidence 555422 22 7899999999999998 5589999964 6776554
No 9
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.36 E-value=8.9e-13 Score=68.24 Aligned_cols=30 Identities=40% Similarity=0.331 Sum_probs=25.9
Q ss_pred eEEEeccccceEEEecCCcEEEecCCCCCC
Q 035899 95 VRCIALGGVHSIALTSLAVEECNRCLILGE 124 (131)
Q Consensus 95 i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~ 124 (131)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 10
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.33 E-value=2.2e-12 Score=66.75 Aligned_cols=29 Identities=28% Similarity=0.792 Sum_probs=23.8
Q ss_pred EEEEEccCcce-EEEeCCeEEEEeCCCCCC
Q 035899 45 SNSSSCGLFHS-GLVVNGKLWIWGKGDGGR 73 (131)
Q Consensus 45 i~~is~G~~hs-al~~~G~vy~wG~n~~Gq 73 (131)
|++||||.+|+ +|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 67999999999 567899999999999998
No 11
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.17 E-value=1e-10 Score=102.76 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=30.8
Q ss_pred ceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899 94 HVRCIALGGVHSIALTSLAVEECNRCLILGEEE 126 (131)
Q Consensus 94 ~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~ 126 (131)
++.+|+||.+|+++|.+|++||+||+|..||..
T Consensus 768 kv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG 800 (3738)
T KOG1428|consen 768 KVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLG 800 (3738)
T ss_pred eEEEEeccCceEEEEecCCcEEEecCCcccccC
Confidence 789999999999999999999999999988854
No 12
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5e-11 Score=100.22 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=73.9
Q ss_pred CeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccceEEEec-------CCc
Q 035899 43 RFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTS-------LAV 113 (131)
Q Consensus 43 ~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~-------~g~ 113 (131)
+.+++++||.+|+ |+...|++|+||.+.+||+|.+.......|..++.+.+ +..+|+||..||++++. +|.
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~ 93 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK 93 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence 4688999999998 78899999999999999999995544334999998888 89999999998887766 999
Q ss_pred EEEecCCCCCCccc
Q 035899 114 EECNRCLILGEEEK 127 (131)
Q Consensus 114 vy~wG~~~~G~~~~ 127 (131)
++.+|++..|+..+
T Consensus 94 ~fs~Ga~~~~q~~h 107 (850)
T KOG0941|consen 94 VFSFGAGSTGQLGH 107 (850)
T ss_pred ccccCCcccccccc
Confidence 99999999988665
No 13
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.87 E-value=5.4e-09 Score=59.77 Aligned_cols=43 Identities=16% Similarity=0.027 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCCCCC-CCCCCceecC-------CCeEEEEEccCcceEEE
Q 035899 16 EEALVVRLFNSENSPN-WNQLANLSVS-------KRFSNSSSCGLFHSGLV 58 (131)
Q Consensus 16 ~~~l~~~g~n~~gqlg-~~~~~~~~~~-------~~~i~~is~G~~hsal~ 58 (131)
++.+|.||.|.+|||| .........| ..+|++|+||.+||+++
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 4566777779999999 5555444332 46799999999999653
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.8e-09 Score=89.95 Aligned_cols=111 Identities=24% Similarity=0.214 Sum_probs=86.3
Q ss_pred ecCCCeEEEEecCCCCCCCCCC----CCc---eecCCCeEEEEEccCcce-EEEe-------CCeEEEEeCCCCCCCCCC
Q 035899 13 LMAEEALVVRLFNSENSPNWNQ----LAN---LSVSKRFSNSSSCGLFHS-GLVV-------NGKLWIWGKGDGGRLGFG 77 (131)
Q Consensus 13 ~~~~~~l~~~g~n~~gqlg~~~----~~~---~~~~~~~i~~is~G~~hs-al~~-------~G~vy~wG~n~~GqLG~g 77 (131)
+...+.+++||.|.+||++... ... -+..+.+..+|+||..|| ++.. +|.+|++|....||+|+.
T Consensus 29 l~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~ 108 (850)
T KOG0941|consen 29 LSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHS 108 (850)
T ss_pred hhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCccccccccc
Confidence 4566788888889999998761 111 123356677899999997 4434 899999999999999997
Q ss_pred CCCCeeeeEEcCCCCC-ceEEEeccccceEEEe-cCCcEEEecCCCCC
Q 035899 78 HEDAAFVPTLNPYLDD-HVRCIALGGVHSIALT-SLAVEECNRCLILG 123 (131)
Q Consensus 78 ~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt-~~g~vy~wG~~~~G 123 (131)
.......|..+..+-+ .+.+|+||..|+.+.- .-|++|.+|.+.-|
T Consensus 109 ~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 109 LTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred ccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 6666677777765555 8999999999998864 56899999998877
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.79 E-value=1.9 Score=36.51 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=63.7
Q ss_pred ceEEEEEecCCCeEEEEe-cCCCCCCCCCCCCceecCCCeEEEEEccCcce--EEEeCCeEE-EEeCCCCCCCCCCCCCC
Q 035899 6 EELYIFSLMAEEALVVRL-FNSENSPNWNQLANLSVSKRFSNSSSCGLFHS--GLVVNGKLW-IWGKGDGGRLGFGHEDA 81 (131)
Q Consensus 6 ~~l~~~~~~~~~~l~~~g-~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hs--al~~~G~vy-~wG~n~~GqLG~g~~~~ 81 (131)
+.+..|++.++|.++.+- .-.+..-|..= ....+-..+.+|++|..-. |++.+|.|| --|-.+..+-|..=. +
T Consensus 191 g~~~awAI~s~Gd~y~RtGvs~~~P~GraW--~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-d 267 (705)
T KOG3669|consen 191 GDDTAWAIRSSGDLYLRTGVSVDRPCGRAW--KVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-D 267 (705)
T ss_pred CceEEEEEecCCcEEEeccccCCCCCCcee--eecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-h
Confidence 467788888888887742 22222212110 0111122578999999443 567799875 456666555553222 3
Q ss_pred eeeeEEcCCCCCceEEEeccccceEEEecCCcEEE
Q 035899 82 AFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEEC 116 (131)
Q Consensus 82 ~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~ 116 (131)
..+|+... .++.|+.|..-.-+||.+|.++.
T Consensus 268 I~tP~~a~----~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 268 IVTPRQAL----EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccCccccc----ceEEEEeccceEEEEecCCcEEE
Confidence 34444432 38899999888899999999964
No 16
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=86.37 E-value=0.65 Score=23.92 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=15.9
Q ss_pred EEEEEecCCCeEEEEecCCCCCCC
Q 035899 8 LYIFSLMAEEALVVRLFNSENSPN 31 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~~gqlg 31 (131)
+|+|++ ++++||.|..|.++
T Consensus 13 ~FTfSl----slVVWGRnG~g~~~ 32 (33)
T PRK02529 13 IFTFSI----AMVVWGRNGDGSID 32 (33)
T ss_pred Hhheee----EEEEEecCCccccC
Confidence 466776 79999999988764
No 17
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=83.18 E-value=13 Score=28.64 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=12.7
Q ss_pred eCCeEEEEeCCCCCC
Q 035899 59 VNGKLWIWGKGDGGR 73 (131)
Q Consensus 59 ~~G~vy~wG~n~~Gq 73 (131)
-||+||.|=+++.-.
T Consensus 79 gdG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 79 GDGLVYGWEWNEEEE 93 (325)
T ss_pred cCceEEEeeehhhhh
Confidence 389999999998765
No 18
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=80.84 E-value=3.7 Score=20.96 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=21.0
Q ss_pred ceEEEeccc-cceEEEecCCcEEEe
Q 035899 94 HVRCIALGG-VHSIALTSLAVEECN 117 (131)
Q Consensus 94 ~i~~ia~G~-~hs~~lt~~g~vy~w 117 (131)
.+++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 789999999 888889999999864
No 19
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.51 E-value=2.3 Score=31.36 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=23.6
Q ss_pred ceEEEeccccceEEEecCCcEEEecC
Q 035899 94 HVRCIALGGVHSIALTSLAVEECNRC 119 (131)
Q Consensus 94 ~i~~ia~G~~hs~~lt~~g~vy~wG~ 119 (131)
+++.+.|-..+-+++|.+|.+|+|.-
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 78889999999999999999999964
No 20
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=79.75 E-value=2.2 Score=23.46 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=14.1
Q ss_pred cceEEEeCCeEEEEeCC
Q 035899 53 FHSGLVVNGKLWIWGKG 69 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n 69 (131)
.|++++.++++|+||--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 47788889999999944
No 21
>PF13964 Kelch_6: Kelch motif
Probab=77.91 E-value=2.7 Score=23.05 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=14.8
Q ss_pred cceEEEeCCeEEEEeCCCC
Q 035899 53 FHSGLVVNGKLWIWGKGDG 71 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n~~ 71 (131)
.|+++..+++||.+|-...
T Consensus 4 ~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred cCEEEEECCEEEEECCCCC
Confidence 4678888999999995543
No 22
>PLN02772 guanylate kinase
Probab=76.16 E-value=14 Score=30.06 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=37.0
Q ss_pred CcceEEEeCCeEEEEe-CCCCCCCCCCC----C--CCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCC
Q 035899 52 LFHSGLVVNGKLWIWG-KGDGGRLGFGH----E--DAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCL 120 (131)
Q Consensus 52 ~~hsal~~~G~vy~wG-~n~~GqLG~g~----~--~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~ 120 (131)
..|++++-..++|.|| +++.+++-..- . .....|+..-..+ .+-.-||+++-.+.+++..+.+
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P------~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP------KPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCC------CCCCcceEEEECCceEEEEeCC
Confidence 3488888889999999 44444343221 1 1122333222111 1234689998888999887654
No 23
>PF13854 Kelch_5: Kelch motif
Probab=72.78 E-value=4.7 Score=21.46 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.3
Q ss_pred cceEEEeCCeEEEEeCCC
Q 035899 53 FHSGLVVNGKLWIWGKGD 70 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n~ 70 (131)
.|++++.++++|.+|--.
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 578877889999999443
No 24
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=3.9 Score=38.00 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=49.4
Q ss_pred eEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCC--CCeeeeEEc-CCCCC-ceEEEeccccceEEEecCCcEEEe
Q 035899 44 FSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHE--DAAFVPTLN-PYLDD-HVRCIALGGVHSIALTSLAVEECN 117 (131)
Q Consensus 44 ~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~--~~~~~P~~v-~~l~~-~i~~ia~G~~hs~~lt~~g~vy~w 117 (131)
+++.|.+-++.. |+..+|++|.|-+.+.--|-..-. .+..-|..- -.+.+ +|+.+++..-..-++|++|.|-+|
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 455555544444 566799999999887654433211 222233322 13445 899999999999999999999888
No 25
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=68.13 E-value=8 Score=20.54 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.1
Q ss_pred cceEEEeCCeEEEEeC
Q 035899 53 FHSGLVVNGKLWIWGK 68 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~ 68 (131)
.|++++.+++||+.|-
T Consensus 4 ~~~~~~~~~~iyv~GG 19 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGG 19 (47)
T ss_dssp SEEEEEETTEEEEEEE
T ss_pred cCEEEEECCEEEEEee
Confidence 4667888999999993
No 26
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=61.50 E-value=9.9 Score=20.51 Aligned_cols=16 Identities=13% Similarity=-0.265 Sum_probs=11.1
Q ss_pred cceEEEecCCcEEEec
Q 035899 103 VHSIALTSLAVEECNR 118 (131)
Q Consensus 103 ~hs~~lt~~g~vy~wG 118 (131)
.|+++...++.+|.+|
T Consensus 4 ~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFG 19 (49)
T ss_dssp S-EEEEE-TTEEEEE-
T ss_pred eEEEEEEeCCeEEEEC
Confidence 5888888778999986
No 27
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.73 E-value=1.2e+02 Score=26.70 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=17.6
Q ss_pred ceEEE-----eccccceEEEecCCcEEEe
Q 035899 94 HVRCI-----ALGGVHSIALTSLAVEECN 117 (131)
Q Consensus 94 ~i~~i-----a~G~~hs~~lt~~g~vy~w 117 (131)
.|.++ +..+.|-++||+|+.+-.+
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 56666 3457899999999987443
No 28
>PHA03098 kelch-like protein; Provisional
Probab=55.97 E-value=1.1e+02 Score=25.23 Aligned_cols=17 Identities=18% Similarity=0.222 Sum_probs=13.2
Q ss_pred cceEEEeCCeEEEEeCC
Q 035899 53 FHSGLVVNGKLWIWGKG 69 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n 69 (131)
.|+++..++++|++|-.
T Consensus 335 ~~~~~~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTVFNNRIYVIGGI 351 (534)
T ss_pred cceEEEECCEEEEEeCC
Confidence 46666679999999954
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=54.48 E-value=1e+02 Score=23.93 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=36.7
Q ss_pred EEEEEccCcce-EEE--eCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCceEEEecccc--ceEEEecCCcEEEecC
Q 035899 45 SNSSSCGLFHS-GLV--VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGV--HSIALTSLAVEECNRC 119 (131)
Q Consensus 45 i~~is~G~~hs-al~--~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia~G~~--hs~~lt~~g~vy~wG~ 119 (131)
|-.|.--.+.+ .+. .+|.|+.|-..+.-. ..+ ++|.-...|.+++.... -.++.+..|..|+|..
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c------~~~----liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENSC------THE----LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCcc------ccc----cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 44555555666 333 379999997554311 111 22211114555555444 3456788999999975
Q ss_pred C
Q 035899 120 L 120 (131)
Q Consensus 120 ~ 120 (131)
-
T Consensus 197 ~ 197 (311)
T KOG0315|consen 197 L 197 (311)
T ss_pred c
Confidence 3
No 30
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=54.26 E-value=13 Score=19.60 Aligned_cols=17 Identities=18% Similarity=-0.044 Sum_probs=14.2
Q ss_pred cceEEEecCCcEEEecC
Q 035899 103 VHSIALTSLAVEECNRC 119 (131)
Q Consensus 103 ~hs~~lt~~g~vy~wG~ 119 (131)
.+.++++.+|.+|+-|.
T Consensus 15 ~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGY 31 (38)
T ss_pred EEEEEECCCCCEEEEEe
Confidence 46789999999998775
No 31
>PHA02713 hypothetical protein; Provisional
Probab=53.67 E-value=87 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=13.0
Q ss_pred cceEEEeCCeEEEEeCC
Q 035899 53 FHSGLVVNGKLWIWGKG 69 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n 69 (131)
.|+++..+|+||++|-.
T Consensus 344 ~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred ceeEEEECCEEEEECCc
Confidence 34566779999999964
No 32
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=53.00 E-value=60 Score=24.51 Aligned_cols=106 Identities=10% Similarity=0.070 Sum_probs=50.6
Q ss_pred cCCCeEEEEecCCCCCCCCCCCCceecC-C-C---eEEEEEccCcc-eEE-EeCCeEEEEeCCCCCCCCCCCC-CCeeee
Q 035899 14 MAEEALVVRLFNSENSPNWNQLANLSVS-K-R---FSNSSSCGLFH-SGL-VVNGKLWIWGKGDGGRLGFGHE-DAAFVP 85 (131)
Q Consensus 14 ~~~~~l~~~g~n~~gqlg~~~~~~~~~~-~-~---~i~~is~G~~h-sal-~~~G~vy~wG~n~~GqLG~g~~-~~~~~P 85 (131)
..+|++...|.+.+|.-++.-....... . . ..-.++.++.. |+. +.||+|++.|-....-...-+. .....+
T Consensus 75 L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~ 154 (243)
T PF07250_consen 75 LPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGP 154 (243)
T ss_pred CCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCc
Confidence 3677888777776644433211111100 0 0 11136667766 564 4799999998554111100000 000112
Q ss_pred EEcCCCCCceE-EEeccccceEEEecCCcEEEecCC
Q 035899 86 TLNPYLDDHVR-CIALGGVHSIALTSLAVEECNRCL 120 (131)
Q Consensus 86 ~~v~~l~~~i~-~ia~G~~hs~~lt~~g~vy~wG~~ 120 (131)
..++.+. ... ......+--+.|.-+|+||.|+..
T Consensus 155 ~~~~~l~-~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 155 VTLPFLS-QTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred eeeecch-hhhccCccccCceEEEcCCCCEEEEEcC
Confidence 2222222 111 122334446777789999998764
No 33
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=1.4 Score=40.73 Aligned_cols=107 Identities=15% Similarity=-0.019 Sum_probs=64.9
Q ss_pred EecCCCeEEEEecCCCCCCCC----------CCCCceecCCCeEEEEEccCcc-eEEEeCCeEEEEeCCCCCCCCCCCCC
Q 035899 12 SLMAEEALVVRLFNSENSPNW----------NQLANLSVSKRFSNSSSCGLFH-SGLVVNGKLWIWGKGDGGRLGFGHED 80 (131)
Q Consensus 12 ~~~~~~~l~~~g~n~~gqlg~----------~~~~~~~~~~~~i~~is~G~~h-sal~~~G~vy~wG~n~~GqLG~g~~~ 80 (131)
.++.+|.+|.|-|...--+.- ++...+-+.+.+|+.+++-.-- |+++.+|+|-+|=.- .|.+...
T Consensus 388 AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWlDE----cgagV~f 463 (3015)
T KOG0943|consen 388 ALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWLDE----CGAGVAF 463 (3015)
T ss_pred HHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHHhh----hhhhhhh
Confidence 355677777777655433321 1112233446788998887665 478889999999432 1111111
Q ss_pred --CeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCC
Q 035899 81 --AAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILG 123 (131)
Q Consensus 81 --~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G 123 (131)
....-++++ ..+ .+++..|-..|.++...|..+|.||---+-
T Consensus 464 kLa~ea~Tkie-ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~ 508 (3015)
T KOG0943|consen 464 KLAHEAQTKIE-EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFS 508 (3015)
T ss_pred hhhhhhhhhhh-hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeeh
Confidence 011222333 333 677778888899998899999999965443
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=49.80 E-value=1.2e+02 Score=23.50 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=19.1
Q ss_pred CeEEEEEccCcce---EEEeCCeEEEEeCCC
Q 035899 43 RFSNSSSCGLFHS---GLVVNGKLWIWGKGD 70 (131)
Q Consensus 43 ~~i~~is~G~~hs---al~~~G~vy~wG~n~ 70 (131)
..|.+++...+=+ |+...|++|+|-.-.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 4566776666655 344689999998554
No 35
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=47.09 E-value=25 Score=21.88 Aligned_cols=21 Identities=14% Similarity=-0.059 Sum_probs=18.6
Q ss_pred ceEEEeccccceEEEecCCcE
Q 035899 94 HVRCIALGGVHSIALTSLAVE 114 (131)
Q Consensus 94 ~i~~ia~G~~hs~~lt~~g~v 114 (131)
+|.++..|..+|++..++|.+
T Consensus 13 ~V~~~~iG~~~t~V~~~~G~~ 33 (87)
T PF13938_consen 13 RVEDVCIGLHWTAVELSDGGC 33 (87)
T ss_dssp EEEEEEEBSSEEEEEETT-EE
T ss_pred EEEEEEEcCCEEEEEeCCCce
Confidence 799999999999999999866
No 36
>CHL00009 petN cytochrome b6/f complex subunit VIII
Probab=47.07 E-value=13 Score=18.68 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=10.9
Q ss_pred EEEEEecCCCeEEEEecCC
Q 035899 8 LYIFSLMAEEALVVRLFNS 26 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~ 26 (131)
+|+|++ ++++||.|.
T Consensus 14 ~fTfSl----slVVWGR~G 28 (29)
T CHL00009 14 VFTFSL----SLVVWGRSG 28 (29)
T ss_pred Hhheee----EEEEEeccC
Confidence 466665 789999874
No 37
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=46.41 E-value=31 Score=16.59 Aligned_cols=18 Identities=17% Similarity=-0.033 Sum_probs=13.7
Q ss_pred cceEEEecCCcEEEecCC
Q 035899 103 VHSIALTSLAVEECNRCL 120 (131)
Q Consensus 103 ~hs~~lt~~g~vy~wG~~ 120 (131)
.|.++++.+|++|+-.++
T Consensus 4 P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEEETTSEEEEEECC
T ss_pred CcEEEEeCCCCEEEEECC
Confidence 467888899999986543
No 38
>PHA02146 hypothetical protein
Probab=46.26 E-value=21 Score=21.84 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=21.2
Q ss_pred EeccccceEE-EecCCcEEEecCCCCCCccc
Q 035899 98 IALGGVHSIA-LTSLAVEECNRCLILGEEEK 127 (131)
Q Consensus 98 ia~G~~hs~~-lt~~g~vy~wG~~~~G~~~~ 127 (131)
|.-|..+++- |++||.+|+.|-.-.|++.+
T Consensus 23 i~ng~ef~v~~~d~dgd~~s~~iswng~dg~ 53 (86)
T PHA02146 23 ITNGTEFTVTNIDDDGDLYTYDISWNGRDGK 53 (86)
T ss_pred cCCCcEEEeeccccCCCeEeecccccCccCC
Confidence 4556555543 78899999988776777655
No 39
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=45.56 E-value=8.7 Score=19.22 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=10.6
Q ss_pred EEEEEecCCCeEEEEecCC
Q 035899 8 LYIFSLMAEEALVVRLFNS 26 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~ 26 (131)
+|+|++ ++++||.|.
T Consensus 14 ~FtfSl----slVVWGRnG 28 (29)
T PRK14747 14 LFTWSI----AMVVWGRNG 28 (29)
T ss_pred HHhhee----eEEEEecCC
Confidence 355665 788999874
No 40
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=44.42 E-value=44 Score=26.19 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=33.1
Q ss_pred CcceEEEeCCeEEEEeCCCCCCCCCCCCCC--eeeeEEcCC--CCCceEEEeccccceEEEecCCcEEEecC
Q 035899 52 LFHSGLVVNGKLWIWGKGDGGRLGFGHEDA--AFVPTLNPY--LDDHVRCIALGGVHSIALTSLAVEECNRC 119 (131)
Q Consensus 52 ~~hsal~~~G~vy~wG~n~~GqLG~g~~~~--~~~P~~v~~--l~~~i~~ia~G~~hs~~lt~~g~vy~wG~ 119 (131)
..||++.-+|++|.+| +-.|.|-. +..+ ...|+.... ++.+-+.-++=..|+.++. .+++|.+|-
T Consensus 242 RSHS~fvYng~~Y~FG-GYng~ln~-HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~-g~kv~LFGG 310 (392)
T KOG4693|consen 242 RSHSTFVYNGKMYMFG-GYNGTLNV-HFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS-GGKVYLFGG 310 (392)
T ss_pred cccceEEEcceEEEec-ccchhhhh-hhcceeecccccchheeeeccCCCCCcccceeEEEE-CCEEEEecC
Confidence 3689999999999999 22232211 1111 122322110 0001112233455666665 789999873
No 41
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=44.13 E-value=75 Score=27.38 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=37.9
Q ss_pred EEEEecCCCeEEEE-ecCCCCCCCCCCCCceecC--CCeEEEEEccCcce-EEEeCCeEEE
Q 035899 9 YIFSLMAEEALVVR-LFNSENSPNWNQLANLSVS--KRFSNSSSCGLFHS-GLVVNGKLWI 65 (131)
Q Consensus 9 ~~~~~~~~~~l~~~-g~n~~gqlg~~~~~~~~~~--~~~i~~is~G~~hs-al~~~G~vy~ 65 (131)
-+|.+..++++|.+ |...+.+.|..=. .+..| ...++.|+-|..-. ||+.+|.+|.
T Consensus 239 ~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 239 VVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQALEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred eEEEEeeCCcEEEEecccccCCCCchhh-hccCcccccceEEEEeccceEEEEecCCcEEE
Confidence 47889999998875 5666666664322 22222 22378999996666 7788999875
No 42
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=43.75 E-value=44 Score=25.55 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.0
Q ss_pred cceEEEeCCeEEEEeCCC
Q 035899 53 FHSGLVVNGKLWIWGKGD 70 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n~ 70 (131)
.|++...+++||++|-..
T Consensus 116 ~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNR 133 (323)
T ss_pred CceEEEECCEEEEEeCcC
Confidence 466667799999999653
No 43
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=41.53 E-value=35 Score=25.01 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=39.5
Q ss_pred CeEEEEe--CCCCCCCCCCCCCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEe
Q 035899 61 GKLWIWG--KGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECN 117 (131)
Q Consensus 61 G~vy~wG--~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~w 117 (131)
|+||... .++.-+|=+++.....+|..+..+.+.-..|..|..|-.+ .+-|.||.-
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTv-S~GGnLy~~ 145 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTV-SKGGNLYKY 145 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceE-ccCCeEEEE
Confidence 8999998 5556667666666688999999888733445566666554 357777764
No 44
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.83 E-value=67 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=20.5
Q ss_pred CeEEEEEccCcce-EEEeCCeEEEEeCCC
Q 035899 43 RFSNSSSCGLFHS-GLVVNGKLWIWGKGD 70 (131)
Q Consensus 43 ~~i~~is~G~~hs-al~~~G~vy~wG~n~ 70 (131)
.+++.+.|-..+. |++.+|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 3455677766666 677899999997554
No 45
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=38.11 E-value=51 Score=20.67 Aligned_cols=25 Identities=8% Similarity=-0.134 Sum_probs=20.1
Q ss_pred ceEEEecc-ccceEEEecCCcEEEec
Q 035899 94 HVRCIALG-GVHSIALTSLAVEECNR 118 (131)
Q Consensus 94 ~i~~ia~G-~~hs~~lt~~g~vy~wG 118 (131)
.=..|+|. ....++|+.||.+|.-+
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~a 42 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKA 42 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEE
Confidence 45679999 88889999999999754
No 46
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=34.82 E-value=62 Score=15.87 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=18.1
Q ss_pred ceEEEeccccceEEEecCCcE
Q 035899 94 HVRCIALGGVHSIALTSLAVE 114 (131)
Q Consensus 94 ~i~~ia~G~~hs~~lt~~g~v 114 (131)
.|..|++|....++.|+.+-|
T Consensus 3 ~i~aia~g~~~vavaTS~~~l 23 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYL 23 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeE
Confidence 588999999999999987755
No 47
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=32.75 E-value=1.1e+02 Score=18.17 Aligned_cols=27 Identities=7% Similarity=-0.144 Sum_probs=17.9
Q ss_pred ceEEEeccccceEEEecCCcEEEecCC
Q 035899 94 HVRCIALGGVHSIALTSLAVEECNRCL 120 (131)
Q Consensus 94 ~i~~ia~G~~hs~~lt~~g~vy~wG~~ 120 (131)
+-+.+-+-..++++|+..|--|+|-.+
T Consensus 26 P~~n~LsNg~y~~mvt~~G~GySw~~~ 52 (66)
T PF06204_consen 26 PWVNVLSNGSYGVMVTNSGSGYSWAKN 52 (66)
T ss_dssp --EEEE-SSSEEEEEETTSBEEEEES-
T ss_pred CEEEEeeCCcEEEEEcCCCceeecccc
Confidence 445555555778888999999998644
No 48
>PLN02153 epithiospecifier protein
Probab=32.72 E-value=2.3e+02 Score=21.78 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=11.7
Q ss_pred cceEEEeCCeEEEEeC
Q 035899 53 FHSGLVVNGKLWIWGK 68 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~ 68 (131)
.|+++..++++|.+|-
T Consensus 186 ~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 186 GAGFAVVQGKIWVVYG 201 (341)
T ss_pred cceEEEECCeEEEEec
Confidence 3555667899999874
No 49
>PLN02193 nitrile-specifier protein
Probab=31.86 E-value=2.9e+02 Score=22.62 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.3
Q ss_pred cceEEEeCCeEEEEeCC
Q 035899 53 FHSGLVVNGKLWIWGKG 69 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n 69 (131)
.|+++..++++|.+|--
T Consensus 271 ~h~~~~~~~~iYv~GG~ 287 (470)
T PLN02193 271 FHSMAADEENVYVFGGV 287 (470)
T ss_pred ceEEEEECCEEEEECCC
Confidence 47776678999999943
No 50
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=31.21 E-value=40 Score=22.08 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=15.2
Q ss_pred ceE-EEeCCeEEEEeCCCCCC
Q 035899 54 HSG-LVVNGKLWIWGKGDGGR 73 (131)
Q Consensus 54 hsa-l~~~G~vy~wG~n~~Gq 73 (131)
.+. +..|++|..||...+.|
T Consensus 81 CTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 81 CTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred eEEEEEECCEEEEEcHHhhhc
Confidence 454 45799999999887654
No 51
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=29.81 E-value=1.6e+02 Score=23.60 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=33.2
Q ss_pred eCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccce--EEEecCCcEEEecC
Q 035899 59 VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHS--IALTSLAVEECNRC 119 (131)
Q Consensus 59 ~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs--~~lt~~g~vy~wG~ 119 (131)
..|+||+|-.... ++...|+....... .|.+.+-...-+ +++++++.|+.|..
T Consensus 327 q~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 327 QSGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEECCCC--------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 5899999984422 22234455444444 677766665444 45578999998854
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.76 E-value=1.6e+02 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=15.2
Q ss_pred eecCCCe-EEEEEccCcce-EEEe-CCeEEEE
Q 035899 38 LSVSKRF-SNSSSCGLFHS-GLVV-NGKLWIW 66 (131)
Q Consensus 38 ~~~~~~~-i~~is~G~~hs-al~~-~G~vy~w 66 (131)
++++... +.+++|-..-- .++. .+..+.|
T Consensus 265 ~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 265 LSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred eccCCceeEEeeecccCccceeEecCCceece
Confidence 3444444 66788854443 3443 5555555
No 53
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=28.42 E-value=1.6e+02 Score=23.60 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred cCceEEEEEecCCCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceE---EEeCCeEEEEeC
Q 035899 4 NDEELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSG---LVVNGKLWIWGK 68 (131)
Q Consensus 4 ~d~~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsa---l~~~G~vy~wG~ 68 (131)
+.+.+|+|-|..++.- ....-.-+..+..|.|.|-...-+. +.+++.||-|-+
T Consensus 327 q~g~v~vwdL~~~ep~------------~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPP------------KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEECCCCCCc------------cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4567777777544331 1111112334566778776666653 236899999864
No 54
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=26.93 E-value=44 Score=20.94 Aligned_cols=13 Identities=23% Similarity=0.930 Sum_probs=9.6
Q ss_pred CeE-EEEeCCCCCC
Q 035899 61 GKL-WIWGKGDGGR 73 (131)
Q Consensus 61 G~v-y~wG~n~~Gq 73 (131)
-.+ |.||+|+.-+
T Consensus 56 Psv~waWGSNKnk~ 69 (84)
T PF07312_consen 56 PSVYWAWGSNKNKQ 69 (84)
T ss_pred cceeeeeccCCCCC
Confidence 345 9999997654
No 55
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=26.54 E-value=1.8e+02 Score=22.33 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=11.7
Q ss_pred ceEEEeCCeEEEEeC
Q 035899 54 HSGLVVNGKLWIWGK 68 (131)
Q Consensus 54 hsal~~~G~vy~wG~ 68 (131)
|++++.+|+||.+|-
T Consensus 251 ~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 251 AFAGISNGVLLVAGG 265 (346)
T ss_pred EeeeEECCEEEEeec
Confidence 445567999999984
No 56
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.73 E-value=1.8e+02 Score=24.20 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=34.8
Q ss_pred cceEEE-eCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCceEEEecc--ccceEEEecCCcEEEecCC
Q 035899 53 FHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALG--GVHSIALTSLAVEECNRCL 120 (131)
Q Consensus 53 ~hsal~-~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia~G--~~hs~~lt~~g~vy~wG~~ 120 (131)
+|++.. -||-+|.-|.- .|++-+=+...+..-.+++.-.++|+.|+-+ +++-+.-++|+.|.+|..-
T Consensus 350 ~ts~~fHpDgLifgtgt~-d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEeccCC-CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 344433 47777766543 2333222222222222233211278777766 4455666788889999753
No 57
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=25.33 E-value=2.3e+02 Score=27.60 Aligned_cols=121 Identities=16% Similarity=0.070 Sum_probs=60.5
Q ss_pred CcccCceEEEEEecCCCeEEE----EecCCCCCCCCCCCCcee-cCCCeEEEEEccCcceEE---------EeCCeE-EE
Q 035899 1 MKENDEELYIFSLMAEEALVV----RLFNSENSPNWNQLANLS-VSKRFSNSSSCGLFHSGL---------VVNGKL-WI 65 (131)
Q Consensus 1 ~~~~d~~l~~~~~~~~~~l~~----~g~n~~gqlg~~~~~~~~-~~~~~i~~is~G~~hsal---------~~~G~v-y~ 65 (131)
++..|++||.|-. +.+.|. ......-+|+...--.+. -.+..++.++++..+... ..+|+| ..
T Consensus 377 lRlHd~~LY~~d~--~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYAk~~~~l~nLSs~~~~~~~v~~l~sfSv~~~g~vA~L 454 (1774)
T PF11725_consen 377 LRLHDDRLYQFDP--NTARWKPPPDKSDTPFSSLSRQGDGKLYAKDDDTLVNLSSGQMSEAEVDKLKSFSVAPDGTVAML 454 (1774)
T ss_pred EEeecCceeeecc--ccceecCCCCcccchhhhhcccCCCceEecCCCceeecCCCCcchhhhhhcccccccCCCceeee
Confidence 3567888888864 222333 111222222222111111 223445566666554322 124554 44
Q ss_pred EeCCCCC-CCCCCCCC-CeeeeEEcC--CCCC---ceEEEeccccceEEEecCCcEEEecCCCCC
Q 035899 66 WGKGDGG-RLGFGHED-AAFVPTLNP--YLDD---HVRCIALGGVHSIALTSLAVEECNRCLILG 123 (131)
Q Consensus 66 wG~n~~G-qLG~g~~~-~~~~P~~v~--~l~~---~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G 123 (131)
-|....+ ||+.-... ....|+.-. .|.+ ....|.....+-++.+.+|++|+--....+
T Consensus 455 ~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~drLFvADseGkLYsa~l~~~~ 519 (1774)
T PF11725_consen 455 TGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSNDRLFVADSEGKLYSADLPAAQ 519 (1774)
T ss_pred ecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCCeEEEEeCCCCEEeccccccc
Confidence 4555555 55543322 123342211 2222 677788888889999999999986555443
No 58
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=25.06 E-value=5.3e+02 Score=23.54 Aligned_cols=67 Identities=16% Similarity=-0.007 Sum_probs=40.9
Q ss_pred ecCC-CeEEEEEccCcceE-EEeCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEE
Q 035899 39 SVSK-RFSNSSSCGLFHSG-LVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEEC 116 (131)
Q Consensus 39 ~~~~-~~i~~is~G~~hsa-l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~ 116 (131)
.+|. ..++.|+|+....| +|+.|-+-+|=.+ -.|+.|..+..+++.++ |..|++++ ||.
T Consensus 520 ~lP~~E~~~~V~~t~~~Vav~TS~~~lRvFt~g-------------Gvq~~I~t~~gP~vtaa-g~~d~L~i-----v~h 580 (933)
T KOG1274|consen 520 ILPLQESIEAVAATSGWVAVATSLGYLRVFTIG-------------GVQREIFTLPGPVVTAA-GFEDSLAI-----VYH 580 (933)
T ss_pred ecCCCCceeEEEccCcEEEEEeccceEEEEEec-------------ceeeeEeecccceEEee-cccceEEE-----EEe
Confidence 3554 67899999999984 6667754443222 14555654544666655 66666664 555
Q ss_pred ecCCCCCC
Q 035899 117 NRCLILGE 124 (131)
Q Consensus 117 wG~~~~G~ 124 (131)
-|...+||
T Consensus 581 ~s~~~~~~ 588 (933)
T KOG1274|consen 581 SSKRFYGR 588 (933)
T ss_pred cCCCCCcc
Confidence 56665654
No 59
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=24.64 E-value=1.3e+02 Score=17.50 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=9.6
Q ss_pred cCceEEEEEecCCCeEEEE
Q 035899 4 NDEELYIFSLMAEEALVVR 22 (131)
Q Consensus 4 ~d~~l~~~~~~~~~~l~~~ 22 (131)
+||++|+=++...++|.+.
T Consensus 30 ~~G~vyl~~~~~~~~L~V~ 48 (68)
T PF13953_consen 30 QDGQVYLSGLPPKGTLTVK 48 (68)
T ss_dssp GCGEEEEEEE-TCEEEEEE
T ss_pred CCCEEEEECCCCCcEEEEE
Confidence 3455555555555555543
No 60
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=24.40 E-value=1e+02 Score=18.75 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=18.0
Q ss_pred EEEccCcceEE-E-eCCeEEEEeCCC
Q 035899 47 SSSCGLFHSGL-V-VNGKLWIWGKGD 70 (131)
Q Consensus 47 ~is~G~~hsal-~-~~G~vy~wG~n~ 70 (131)
.+-|+..++++ . .+|++|.|+...
T Consensus 35 s~Lc~~~v~lvv~sp~gk~~~f~s~s 60 (77)
T cd00265 35 SVLCDAEVALIIFSSSGKLYEFSSPS 60 (77)
T ss_pred eeccCCceeEEEEcCCCceEEecCCC
Confidence 46889888854 3 489999998654
No 61
>PHA02790 Kelch-like protein; Provisional
Probab=24.06 E-value=1e+02 Score=25.29 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=12.9
Q ss_pred cceEEEeCCeEEEEeCC
Q 035899 53 FHSGLVVNGKLWIWGKG 69 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n 69 (131)
.|+++..+|+||+.|-.
T Consensus 355 ~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 355 NPAVASINNVIYVIGGH 371 (480)
T ss_pred ccEEEEECCEEEEecCc
Confidence 35566679999999854
No 62
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.15 E-value=1.1e+02 Score=15.55 Aligned_cols=20 Identities=15% Similarity=-0.139 Sum_probs=11.9
Q ss_pred eccccceEEEecCCcEEEec
Q 035899 99 ALGGVHSIALTSLAVEECNR 118 (131)
Q Consensus 99 a~G~~hs~~lt~~g~vy~wG 118 (131)
+....+.++.+.+|.||+..
T Consensus 18 ~v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEE
T ss_pred EEECCEEEEEcCCCEEEEEe
Confidence 33445666667778887763
No 63
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=22.09 E-value=3.2e+02 Score=21.44 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.1
Q ss_pred ceEEEeCCeEEEEeCC
Q 035899 54 HSGLVVNGKLWIWGKG 69 (131)
Q Consensus 54 hsal~~~G~vy~wG~n 69 (131)
|+++..+++||..|-.
T Consensus 215 ~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 215 SAVVIKGNKLWLINGE 230 (376)
T ss_pred ceEEEECCEEEEEeee
Confidence 4456679999999954
No 64
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=22.08 E-value=1.5e+02 Score=22.68 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=18.9
Q ss_pred CeEEEEEccCcce-E-EEeCCeEEEE
Q 035899 43 RFSNSSSCGLFHS-G-LVVNGKLWIW 66 (131)
Q Consensus 43 ~~i~~is~G~~hs-a-l~~~G~vy~w 66 (131)
..++-|..|..|| + ++.+++||..
T Consensus 167 ~~~~~vniGN~HTlaa~v~~~rI~Gv 192 (254)
T PF08735_consen 167 EGIIVVNIGNGHTLAALVKDGRIYGV 192 (254)
T ss_pred CCeEEEEeCCccEEEEEEeCCEEEEE
Confidence 4577789999998 4 5679999874
No 65
>PHA03092 semaphorin-like protein; Provisional
Probab=21.59 E-value=2.2e+02 Score=19.15 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=22.8
Q ss_pred eCCeEEEEeCCCCCCCCCCCCCCeeeeEEcC
Q 035899 59 VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNP 89 (131)
Q Consensus 59 ~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~ 89 (131)
.+|-||++..|+...-|+....-..+..+|+
T Consensus 40 vngavytfsnn~lnktglan~nyittsikve 70 (134)
T PHA03092 40 VNGAVYTFSNNKLNKTGLANTNYITTSIKVE 70 (134)
T ss_pred cCceEEEecCCccccccccccceEEEEEEEc
Confidence 4799999999999888887655444444454
No 66
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=21.47 E-value=86 Score=20.61 Aligned_cols=21 Identities=14% Similarity=-0.182 Sum_probs=17.5
Q ss_pred cccceEEEecCCcEEEecCCC
Q 035899 101 GGVHSIALTSLAVEECNRCLI 121 (131)
Q Consensus 101 G~~hs~~lt~~g~vy~wG~~~ 121 (131)
-..|.++.|.=|+||.|+.+.
T Consensus 78 ~~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 78 DNYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred ceEEEEEEcccccEEEEEcCC
Confidence 357889999999999998653
No 67
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=21.26 E-value=76 Score=17.52 Aligned_cols=14 Identities=7% Similarity=0.010 Sum_probs=10.6
Q ss_pred cceEEEeCCeEEEE
Q 035899 53 FHSGLVVNGKLWIW 66 (131)
Q Consensus 53 ~hsal~~~G~vy~w 66 (131)
.+.++..||+||.+
T Consensus 6 ~~~~I~~dG~v~pC 19 (64)
T PF13186_consen 6 NSLYIDPDGDVYPC 19 (64)
T ss_pred eEEEEeeCccEEeC
Confidence 34456679999998
No 68
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.78 E-value=1.9e+02 Score=18.89 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=19.4
Q ss_pred cCceEEEEEecCCCeEEEEecCCCCCC
Q 035899 4 NDEELYIFSLMAEEALVVRLFNSENSP 30 (131)
Q Consensus 4 ~d~~l~~~~~~~~~~l~~~g~n~~gql 30 (131)
.++.+|+|.......+-+--+..+|-.
T Consensus 33 ~~g~~fvF~nr~r~riKiL~wd~~G~~ 59 (107)
T PF05717_consen 33 FSGDLFVFCNRRRDRIKILYWDGDGFW 59 (107)
T ss_pred CcceEEEEEeccCCceEEEeccCCceE
Confidence 468899999887777776666655543
No 69
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=20.14 E-value=1.3e+02 Score=15.06 Aligned_cols=14 Identities=7% Similarity=0.413 Sum_probs=11.4
Q ss_pred EEEecCCCeEEEEe
Q 035899 10 IFSLMAEEALVVRL 23 (131)
Q Consensus 10 ~~~~~~~~~l~~~g 23 (131)
+|++..++.++.+-
T Consensus 3 VWav~~~G~v~~R~ 16 (32)
T PF06462_consen 3 VWAVTSDGSVYFRT 16 (32)
T ss_pred EEEEcCCCCEEEEC
Confidence 78888888888764
Done!