Query 035899
Match_columns 131
No_of_seqs 224 out of 1646
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mvd_K Regulator of chromosome 99.9 3E-27 1E-31 186.1 14.2 112 14-125 259-378 (423)
2 4d9s_A UVB-resistance protein 99.9 4.5E-27 1.5E-31 184.9 15.0 118 8-125 235-361 (406)
3 3kci_A Probable E3 ubiquitin-p 99.9 3.1E-27 1.1E-31 184.8 13.4 118 8-125 223-349 (389)
4 3kci_A Probable E3 ubiquitin-p 99.9 2.5E-27 8.5E-32 185.3 12.2 119 7-125 62-191 (389)
5 4d9s_A UVB-resistance protein 99.9 1.3E-26 4.5E-31 182.2 15.8 120 7-126 130-258 (406)
6 1a12_A RCC1, regulator of chro 99.9 1.4E-26 4.8E-31 182.0 14.6 117 8-125 242-369 (413)
7 3of7_A Regulator of chromosome 99.9 9.8E-26 3.4E-30 180.4 15.4 120 7-126 213-346 (473)
8 1a12_A RCC1, regulator of chro 99.9 9.9E-26 3.4E-30 177.2 13.1 118 8-125 174-318 (413)
9 3mvd_K Regulator of chromosome 99.9 2.4E-25 8.2E-30 175.2 14.2 117 9-126 86-212 (423)
10 3of7_A Regulator of chromosome 99.9 6E-25 2E-29 175.8 14.3 118 7-125 266-409 (473)
11 3qhy_B Beta-lactamase inhibito 99.9 9.2E-23 3.2E-27 154.0 11.3 100 8-125 34-133 (282)
12 3qhy_B Beta-lactamase inhibito 99.9 1.2E-21 4E-26 148.0 11.7 93 16-125 119-211 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.2 0.0063 2.2E-07 45.7 5.1 64 44-119 310-374 (400)
14 4gbf_A Phikz131; 7-bladed beta 93.9 0.14 4.7E-06 38.5 6.0 54 15-74 326-380 (400)
15 1k3i_A Galactose oxidase precu 62.2 45 0.0015 26.8 8.6 16 104-119 246-261 (656)
16 2zwa_A Leucine carboxyl methyl 62.2 38 0.0013 27.8 8.3 18 103-120 657-674 (695)
17 4asc_A Kelch repeat and BTB do 53.6 57 0.0019 23.2 7.8 17 52-68 188-204 (315)
18 2vpj_A Kelch-like protein 12; 53.2 49 0.0017 23.2 6.8 18 52-69 104-121 (301)
19 3ii7_A Kelch-like protein 7; p 50.8 40 0.0014 23.8 6.0 18 53-70 48-65 (306)
20 1k3i_A Galactose oxidase precu 47.7 44 0.0015 26.9 6.3 70 53-123 458-533 (656)
21 2vpj_A Kelch-like protein 12; 46.6 46 0.0016 23.3 5.7 18 53-70 55-72 (301)
22 2xn4_A Kelch-like protein 2; s 43.3 45 0.0015 23.5 5.2 16 53-68 54-69 (302)
23 2woz_A Kelch repeat and BTB do 39.7 50 0.0017 23.5 5.0 15 54-68 50-64 (318)
24 2keq_A DNA polymerase III alph 38.4 58 0.002 21.0 4.7 64 47-113 67-135 (139)
25 4a11_B DNA excision repair pro 34.3 1.2E+02 0.0042 21.4 10.9 29 43-71 246-277 (408)
26 2uvk_A YJHT; unknown function, 32.7 92 0.0031 22.4 5.5 16 53-68 245-260 (357)
27 1zgk_A Kelch-like ECH-associat 32.6 81 0.0028 22.3 5.1 17 52-68 207-223 (308)
28 2zwa_A Leucine carboxyl methyl 32.4 2E+02 0.007 23.4 10.4 60 52-118 441-507 (695)
29 3k26_A Polycomb protein EED; W 32.2 1.3E+02 0.0043 20.9 9.1 51 59-120 93-146 (366)
30 2z3g_A Blasticidin-S deaminase 27.4 33 0.0011 22.2 2.0 17 105-122 31-47 (130)
31 2ftc_O L27MT, MRP-L27, mitocho 26.1 31 0.0011 20.1 1.5 21 95-115 48-68 (69)
32 1njh_A Protein YOJF; structura 25.6 55 0.0019 21.1 2.7 31 2-32 73-108 (119)
33 3r8s_W 50S ribosomal protein L 21.7 38 0.0013 20.1 1.3 19 96-114 40-58 (76)
34 2fr5_A Cytidine deaminase; tet 21.7 45 0.0015 22.1 1.8 17 105-122 40-56 (146)
35 1kcq_A Gelsolin, brevin, ADF, 20.7 68 0.0023 19.5 2.5 20 102-121 28-48 (104)
36 1r5t_A Cytidine deaminase; zin 20.3 45 0.0015 21.9 1.6 16 105-121 36-51 (142)
No 1
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=99.95 E-value=3e-27 Score=186.06 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=95.3
Q ss_pred cCCCeEEEEecCCCCCCCCCCCC------ceecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCCCC-eeee
Q 035899 14 MAEEALVVRLFNSENSPNWNQLA------NLSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHEDA-AFVP 85 (131)
Q Consensus 14 ~~~~~l~~~g~n~~gqlg~~~~~------~~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~~~-~~~P 85 (131)
..++.+|.||.|.+||||..... +..++..+|++|+||.+|+ ||+++|+||+||.|.+||||+++... ...|
T Consensus 259 ~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p 338 (423)
T 3mvd_K 259 SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKP 338 (423)
T ss_dssp TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEE
T ss_pred CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCc
Confidence 47888999999999999984322 1223345799999999999 56679999999999999999998765 5789
Q ss_pred EEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 86 TLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 86 ~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
++++.+..+|++|+||..|+++|+++|+||+||.|.+||.
T Consensus 339 ~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqL 378 (423)
T 3mvd_K 339 TIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL 378 (423)
T ss_dssp EECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCS
T ss_pred eEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCC
Confidence 9998776689999999999999999999999999988774
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=99.95 E-value=4.5e-27 Score=184.89 Aligned_cols=118 Identities=23% Similarity=0.245 Sum_probs=103.6
Q ss_pred EEEEEecCCCeEEEEecCCCCCCCCCCCCceec-------CCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCC
Q 035899 8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSV-------SKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHE 79 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~-------~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~ 79 (131)
-+++.+.+++.+|.||.|.+||||..+...... ...+|++|+||.+|+ ||+++|+||+||.|.+||||+++.
T Consensus 235 ~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 314 (406)
T 4d9s_A 235 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNN 314 (406)
T ss_dssp SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS
T ss_pred CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCC
Confidence 357788899999999999999999987655433 245699999999999 566799999999999999999998
Q ss_pred CCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 80 DAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 80 ~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
.....|++++.+.. +|++|+||..|++||+++|+||+||+|..||.
T Consensus 315 ~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqL 361 (406)
T 4d9s_A 315 LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361 (406)
T ss_dssp SCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCcc
Confidence 88899999986555 89999999999999999999999999887764
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=184.75 Aligned_cols=118 Identities=22% Similarity=0.204 Sum_probs=104.9
Q ss_pred EEEEEecCCCeEEEEecCCCCCCCCCCCCceec-------CCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCCC
Q 035899 8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSV-------SKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGHE 79 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~-------~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~~ 79 (131)
-++..+.+++.+|.||.|.+||||......... .+.+|++|+||.+|+ ||+++|+||+||.|.+||||++..
T Consensus 223 ~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence 467788899999999999999999987654332 245699999999999 566799999999999999999999
Q ss_pred CCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 80 DAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 80 ~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
.....|++|+.+.+ +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus 303 ~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqL 349 (389)
T 3kci_A 303 DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQL 349 (389)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred ccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcC
Confidence 88999999998877 89999999999999999999999999987774
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=185.32 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=104.2
Q ss_pred eEEEEEecCCCeEEEEecCCCCCCCCCCCCceecC-------C--CeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCC
Q 035899 7 ELYIFSLMAEEALVVRLFNSENSPNWNQLANLSVS-------K--RFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGF 76 (131)
Q Consensus 7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~--~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~ 76 (131)
+-+++.+.+++.||.||.|.+||||+++......| . .++++|+||.+|+ ||+++|+||+||.|.+||||+
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 44678899999999999999999999876544322 2 3457899999999 566799999999999999999
Q ss_pred CCCCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 77 GHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 77 g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
++......|++|+.+.+ +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqL 191 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRL 191 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCc
Confidence 99988999999998887 89999999999999999999999999887764
No 5
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=99.95 E-value=1.3e-26 Score=182.20 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=106.1
Q ss_pred eEEEEEecCCCeEEEEecCCCCCCCCCCCCceec-------CCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCCC
Q 035899 7 ELYIFSLMAEEALVVRLFNSENSPNWNQLANLSV-------SKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFGH 78 (131)
Q Consensus 7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~-------~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g~ 78 (131)
.-++..+.+++.+|.||.|.+||||+.+...... ++.+|++|+||.+|+ |++++|+||+||.|.+||||+++
T Consensus 130 ~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~ 209 (406)
T 4d9s_A 130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD 209 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCC
Confidence 3467788999999999999999999987655432 245799999999999 56679999999999999999999
Q ss_pred CCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899 79 EDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEEE 126 (131)
Q Consensus 79 ~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~ 126 (131)
......|++++.+.. +|++|+||..|+++|+++|+||+||+|.+||..
T Consensus 210 ~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG 258 (406)
T 4d9s_A 210 RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 258 (406)
T ss_dssp SCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTC
T ss_pred CCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCC
Confidence 999999999998776 999999999999999999999999999888753
No 6
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=99.94 E-value=1.4e-26 Score=182.03 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=101.9
Q ss_pred EEEEEecCCCeEEEEecCCCCCCCCCCCCceecC-------C--CeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCC
Q 035899 8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSVS-------K--RFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFG 77 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~-------~--~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g 77 (131)
-+++.+.+++.+|.||.|.+||||.+.......| . .+|++|+||.+|+ |++++|+||+||.|.+||||++
T Consensus 242 ~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g 321 (413)
T 1a12_A 242 YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG 321 (413)
T ss_dssp TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSC
T ss_pred CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCC
Confidence 3678889999999999999999999876543322 2 4599999999999 5667999999999999999999
Q ss_pred -CCCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 78 -HEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 78 -~~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
+......|++|+.+. +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus 322 ~~~~~~~~P~~v~~l~-~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqL 369 (413)
T 1a12_A 322 EGAEEKSIPTLISRLP-AVSSVACGASVGYAVTKDGRVFAWGMGTNYQL 369 (413)
T ss_dssp TTCCCEEEEEECCSSS-SEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCCccccCCEEecccC-ceeEEEECcceEEEEeCCCCEEEecCCCCCCC
Confidence 456678999999887 89999999999999999999999999887764
No 7
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.8e-26 Score=180.37 Aligned_cols=120 Identities=21% Similarity=0.160 Sum_probs=101.6
Q ss_pred eEEEEEecCCCeEEEEecCCCCCCCCCCCCc--------eecCCCeEEEEEccCcce-EEEeCCeEEEEeCCCCCCCCCC
Q 035899 7 ELYIFSLMAEEALVVRLFNSENSPNWNQLAN--------LSVSKRFSNSSSCGLFHS-GLVVNGKLWIWGKGDGGRLGFG 77 (131)
Q Consensus 7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~--------~~~~~~~i~~is~G~~hs-al~~~G~vy~wG~n~~GqLG~g 77 (131)
.-++..+.+++.+|.||.|.+||||...... ..+....|++|+||.+|+ |++.+|+||+||.|.+||||.+
T Consensus 213 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~ 292 (473)
T 3of7_A 213 KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVS 292 (473)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCC
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCC
Confidence 3467788899999999999999999875432 222235799999999999 5667999999999999999998
Q ss_pred CCC----CeeeeEEcCCCCC-ceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899 78 HED----AAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAVEECNRCLILGEEE 126 (131)
Q Consensus 78 ~~~----~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~ 126 (131)
... ....|++|+.+.+ +|++|+||..|+++|+++|+||+||.|.+||..
T Consensus 293 ~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG 346 (473)
T 3of7_A 293 EDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVG 346 (473)
T ss_dssp SCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTC
T ss_pred CcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccC
Confidence 754 3568999998776 899999999999999999999999998877643
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=99.93 E-value=9.9e-26 Score=177.18 Aligned_cols=118 Identities=13% Similarity=0.120 Sum_probs=100.5
Q ss_pred EEEEEecCCCeEEEEecCCCCCCCCCCCC---------------c--eec------CCCeEEEEEccCcceE-EEeCCeE
Q 035899 8 LYIFSLMAEEALVVRLFNSENSPNWNQLA---------------N--LSV------SKRFSNSSSCGLFHSG-LVVNGKL 63 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~---------------~--~~~------~~~~i~~is~G~~hsa-l~~~G~v 63 (131)
-++..+.+++.+|.||.|.+||||..... + +.+ ...+|++|+||.+|++ ++++|+|
T Consensus 174 ~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v 253 (413)
T 1a12_A 174 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV 253 (413)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCE
T ss_pred ceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCE
Confidence 36778889999999999999999985321 1 111 2357999999999994 6679999
Q ss_pred EEEeCCCCCCCCCCCCCCeeeeEEcCCCCC---ceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 64 WIWGKGDGGRLGFGHEDAAFVPTLNPYLDD---HVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 64 y~wG~n~~GqLG~g~~~~~~~P~~v~~l~~---~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
|+||.|.+||||.+.......|++|+.+.+ +|++|+||..|+++|+++|+||+||.|.+||.
T Consensus 254 ~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqL 318 (413)
T 1a12_A 254 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 318 (413)
T ss_dssp EEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTT
T ss_pred EEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCcc
Confidence 999999999999999888899999987764 59999999999999999999999999877664
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=99.93 E-value=2.4e-25 Score=175.19 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=97.2
Q ss_pred EEEEecCCCeEEEEecCCCCCCCCCCCCc--eecC-----CCeEEEEEccCcce-EEEeCCeEEEEeC--CCCCCCCCCC
Q 035899 9 YIFSLMAEEALVVRLFNSENSPNWNQLAN--LSVS-----KRFSNSSSCGLFHS-GLVVNGKLWIWGK--GDGGRLGFGH 78 (131)
Q Consensus 9 ~~~~~~~~~~l~~~g~n~~gqlg~~~~~~--~~~~-----~~~i~~is~G~~hs-al~~~G~vy~wG~--n~~GqLG~g~ 78 (131)
++..+.+++.||.||.|.+||||...... ...| ..+|++|+||.+|+ ||+++|+||+||. |.+||||.+.
T Consensus 86 h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~ 165 (423)
T 3mvd_K 86 HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTI 165 (423)
T ss_dssp EEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBT
T ss_pred eEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCC
Confidence 45566678899999999999999876532 1111 24689999999999 5667999999999 9999999998
Q ss_pred CCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCcc
Q 035899 79 EDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEEE 126 (131)
Q Consensus 79 ~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~~ 126 (131)
......|.++.... +|++|+||..|+++|+++|+||+||.|.+||..
T Consensus 166 ~~~~~~p~~~~~~~-~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG 212 (423)
T 3mvd_K 166 DGNKRTPIDLMEGT-VCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212 (423)
T ss_dssp TBCEEEEEESSTTC-CEEEEEECSSEEEEEETTSCEEEEECCTTSTTS
T ss_pred CCCCceeeEecCCC-cEEEEecCCCeEEEEecCCeEEEeeCCcCCccC
Confidence 88888887775333 899999999999999999999999998887743
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6e-25 Score=175.82 Aligned_cols=118 Identities=20% Similarity=0.167 Sum_probs=97.6
Q ss_pred eEEEEEecCCCeEEEEecCCCCCCCCCCCC----ce----ec---CCCeEEEEEccCcceE-EEeCCeEEEEeCCCCCCC
Q 035899 7 ELYIFSLMAEEALVVRLFNSENSPNWNQLA----NL----SV---SKRFSNSSSCGLFHSG-LVVNGKLWIWGKGDGGRL 74 (131)
Q Consensus 7 ~l~~~~~~~~~~l~~~g~n~~gqlg~~~~~----~~----~~---~~~~i~~is~G~~hsa-l~~~G~vy~wG~n~~GqL 74 (131)
.-+++.+.+++.+|.||.|.+||||+.... .. .+ .+.+|++|+||.+|++ |+++|+||+||.|.+|||
T Consensus 266 ~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqL 345 (473)
T 3of7_A 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV 345 (473)
T ss_dssp SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTT
T ss_pred CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCcc
Confidence 346788899999999999999999987643 11 11 2357999999999995 667999999999999999
Q ss_pred CCCCCC--------------CeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 75 GFGHED--------------AAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 75 G~g~~~--------------~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
|++... ....|++++.+. +|++|+||..|++||+++|+||+||.|.+||.
T Consensus 346 G~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~-~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqL 409 (473)
T 3of7_A 346 GIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP-KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAV 409 (473)
T ss_dssp CCCGGGCCTTCEECTTSCEEEEEEEEECCSSC-CEEEEEECSSEEEEEETTSCEEEEECCTTCTT
T ss_pred CCCccccccccccccCCceeeeccCcccCCCC-ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCC
Confidence 987531 235788888765 79999999999999999999999999877764
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.89 E-value=9.2e-23 Score=154.02 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=77.2
Q ss_pred EEEEEecCCCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEEeCCeEEEEeCCCCCCCCCCCCCCeeeeEE
Q 035899 8 LYIFSLMAEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTL 87 (131)
Q Consensus 8 l~~~~~~~~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~ 87 (131)
-++..+. ++.||.||.|.+||||++... ..+|++|+||.+|+++++||+||+||.|.+||||. |++
T Consensus 34 ~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~-----~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~--------P~~ 99 (282)
T 3qhy_B 34 FHGLALK-GGKVLGWGANLNGQLTMPAAT-----QSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTV--------PAE 99 (282)
T ss_dssp SEEEEEE-TTEEEEEECCSSSTTSCCGGG-----GSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCC--------CGG
T ss_pred CeEEEEE-CCEEEEEeCCCCCCCCCCccC-----CCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCC--------Ccc
Confidence 3556665 888999999999999865321 23578899999998544699999999999999985 333
Q ss_pred cCCCCCceEEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 88 NPYLDDHVRCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 88 v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
+. . +|++|+||..|+++|+ +|+||+||.|.+||.
T Consensus 100 ~~--~-~v~~ia~G~~hs~al~-~G~v~~wG~n~~gql 133 (282)
T 3qhy_B 100 AR--S-GVDAIAAGAWASYALK-DGKVIAWGDDSDGQT 133 (282)
T ss_dssp GS--S-SEEEEEEETTEEEEEE-TTEEEEEECCTTSTT
T ss_pred cC--C-CeEEEECcCCEEEEEe-CCeEEEecCCCCCcC
Confidence 32 1 6888888888888888 888888888887764
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.87 E-value=1.2e-21 Score=147.95 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=55.6
Q ss_pred CCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEEeCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCce
Q 035899 16 EEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLVVNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHV 95 (131)
Q Consensus 16 ~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i 95 (131)
++.+|.||.|.+||++++... ..+|++|+||.+|++++++|+||+||.|.+||||. |.++. .+|
T Consensus 119 ~G~v~~wG~n~~gqlg~~~~~-----~~~i~~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~--------p~~~~---~~v 182 (282)
T 3qhy_B 119 DGKVIAWGDDSDGQTTVPAEA-----QSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTV--------PAEAQ---SGV 182 (282)
T ss_dssp TTEEEEEECCTTSTTSCCGGG-----GSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSC--------CGGGG---SSE
T ss_pred CCeEEEecCCCCCcCCCCccC-----CCCeEEEEcccCEEEEEECCEEEEecCCCCCCCCC--------ceecC---CCe
Confidence 455566666666666543211 12355666666665433356666666666666652 22121 168
Q ss_pred EEEeccccceEEEecCCcEEEecCCCCCCc
Q 035899 96 RCIALGGVHSIALTSLAVEECNRCLILGEE 125 (131)
Q Consensus 96 ~~ia~G~~hs~~lt~~g~vy~wG~~~~G~~ 125 (131)
++|+||..|+++| ++|+||+||.|.+||.
T Consensus 183 ~~i~~G~~hs~al-~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 183 DDVAGGIFHSLAL-KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp EEEEECSSEEEEE-ETTEEEEEECCTTSTT
T ss_pred EEEEecCCEEEEE-ECCeEEEEECCCCCCC
Confidence 8888888888888 7888888888777764
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.24 E-value=0.0063 Score=45.66 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=51.8
Q ss_pred eEEEEEccCcceEEE-eCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCceEEEeccccceEEEecCCcEEEecC
Q 035899 44 FSNSSSCGLFHSGLV-VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNRC 119 (131)
Q Consensus 44 ~i~~is~G~~hsal~-~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG~ 119 (131)
.+-.||.-+.|..++ -|+++++||+++.||+-.... .++..++++|..+++-+..-..+--||.
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t------------agPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH------------AGPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG------------GCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC------------cchHHhHhccCCeEEEEeceeeEEEecC
Confidence 355678888898665 499999999999999854322 1268899999999999999999999995
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=93.88 E-value=0.14 Score=38.51 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCCeEEEEecCCCCCCCCCCCCceecCCCeEEEEEccCcceEEE-eCCeEEEEeCCCCCCC
Q 035899 15 AEEALVVRLFNSENSPNWNQLANLSVSKRFSNSSSCGLFHSGLV-VNGKLWIWGKGDGGRL 74 (131)
Q Consensus 15 ~~~~l~~~g~n~~gqlg~~~~~~~~~~~~~i~~is~G~~hsal~-~~G~vy~wG~n~~GqL 74 (131)
.+++|+..|.|++||+-++.... +..++++|..+++-+ .-..+--||......|
T Consensus 326 gd~el~sFG~~sNGQ~~ip~tag------Pfla~~AG~~fTVTVn~~nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 326 GDGQIAFFGNNDNGQCDVDDHAG------PYIQLAAGHNFTVTVNTLNQVMFWGDSPDNSL 380 (400)
T ss_dssp TTTCCCEEECCTTSTTCCCGGGC------CEEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred cCceeEEeccCCCCceecCCCcc------hHHhHhccCCeEEEEeceeeEEEecCCCCcce
Confidence 34456666678889988775443 256899999999755 5789999998866554
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=62.19 E-value=45 Score=26.84 Aligned_cols=16 Identities=6% Similarity=-0.070 Sum_probs=12.2
Q ss_pred ceEEEecCCcEEEecC
Q 035899 104 HSIALTSLAVEECNRC 119 (131)
Q Consensus 104 hs~~lt~~g~vy~wG~ 119 (131)
|++++..+|+||.+|-
T Consensus 246 ~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGG 261 (656)
T ss_dssp CEEEECTTSCEEEECS
T ss_pred ccccCCCCCCEEEeCC
Confidence 3466678999999974
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=62.16 E-value=38 Score=27.76 Aligned_cols=18 Identities=17% Similarity=-0.108 Sum_probs=11.4
Q ss_pred cceEEEecCCcEEEecCC
Q 035899 103 VHSIALTSLAVEECNRCL 120 (131)
Q Consensus 103 ~hs~~lt~~g~vy~wG~~ 120 (131)
.|++++..+|+||..|-+
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 488887778899998753
No 17
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=53.64 E-value=57 Score=23.15 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=13.2
Q ss_pred CcceEEEeCCeEEEEeC
Q 035899 52 LFHSGLVVNGKLWIWGK 68 (131)
Q Consensus 52 ~~hsal~~~G~vy~wG~ 68 (131)
..|+++..++++|.+|-
T Consensus 188 ~~~~~~~~~~~iyv~GG 204 (315)
T 4asc_A 188 SLFGATVHDGRIIVAAG 204 (315)
T ss_dssp BSCEEEEETTEEEEEEE
T ss_pred hceEEEEECCEEEEEec
Confidence 34677777999999984
No 18
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=53.17 E-value=49 Score=23.17 Aligned_cols=18 Identities=6% Similarity=0.082 Sum_probs=13.5
Q ss_pred CcceEEEeCCeEEEEeCC
Q 035899 52 LFHSGLVVNGKLWIWGKG 69 (131)
Q Consensus 52 ~~hsal~~~G~vy~wG~n 69 (131)
..|+++..++++|.+|--
T Consensus 104 ~~~~~~~~~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTLGDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEETTEEEEECCB
T ss_pred cceeEEEECCEEEEEccc
Confidence 346666679999999843
No 19
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=50.79 E-value=40 Score=23.78 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=13.9
Q ss_pred cceEEEeCCeEEEEeCCC
Q 035899 53 FHSGLVVNGKLWIWGKGD 70 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n~ 70 (131)
.|+++..+++||.+|-..
T Consensus 48 ~~~~~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEEETTEEEEECCBS
T ss_pred eeEEEEECCEEEEEeCCC
Confidence 467777799999999543
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=47.69 E-value=44 Score=26.85 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=33.9
Q ss_pred cceEEEe-CCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCceEEEe----ccccceEE-EecCCcEEEecCCCCC
Q 035899 53 FHSGLVV-NGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIA----LGGVHSIA-LTSLAVEECNRCLILG 123 (131)
Q Consensus 53 ~hsal~~-~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia----~G~~hs~~-lt~~g~vy~wG~~~~G 123 (131)
.|+++.. +|+||..|-...++- .........+.....-..+...++ .=..|+++ +..+|+||..|.+..|
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 4675554 999999996544421 111111111111100000111111 12457644 5579999999876544
No 21
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=46.59 E-value=46 Score=23.33 Aligned_cols=18 Identities=11% Similarity=0.475 Sum_probs=13.9
Q ss_pred cceEEEeCCeEEEEeCCC
Q 035899 53 FHSGLVVNGKLWIWGKGD 70 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~n~ 70 (131)
.|+++..++++|.+|-..
T Consensus 55 ~~~~~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVSLHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred cccEEEECCEEEEEcCCC
Confidence 467777799999999543
No 22
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=43.34 E-value=45 Score=23.47 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=12.8
Q ss_pred cceEEEeCCeEEEEeC
Q 035899 53 FHSGLVVNGKLWIWGK 68 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~ 68 (131)
.|+++..+++||.+|-
T Consensus 54 ~~~~~~~~~~lyv~GG 69 (302)
T 2xn4_A 54 RAGMVYMAGLVFAVGG 69 (302)
T ss_dssp SCEEEEETTEEEEESC
T ss_pred cceEEEECCEEEEEeC
Confidence 4676667999999984
No 23
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=39.69 E-value=50 Score=23.49 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=12.2
Q ss_pred ceEEEeCCeEEEEeC
Q 035899 54 HSGLVVNGKLWIWGK 68 (131)
Q Consensus 54 hsal~~~G~vy~wG~ 68 (131)
|+++..+++||.+|-
T Consensus 50 ~~~~~~~~~lyv~GG 64 (318)
T 2woz_A 50 SSIVTQQNQVYVVGG 64 (318)
T ss_dssp EEEECSSSCEEEEES
T ss_pred eEEEEECCEEEEECC
Confidence 556667999999995
No 24
>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102}
Probab=38.44 E-value=58 Score=21.01 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=36.3
Q ss_pred EEEccCcceEEEeCCeEEE----EeCCCCCCCCCCCCCCeeeeEEcCCCCC-ceEEEeccccceEEEecCCc
Q 035899 47 SSSCGLFHSGLVVNGKLWI----WGKGDGGRLGFGHEDAAFVPTLNPYLDD-HVRCIALGGVHSIALTSLAV 113 (131)
Q Consensus 47 ~is~G~~hsal~~~G~vy~----wG~n~~GqLG~g~~~~~~~P~~v~~l~~-~i~~ia~G~~hs~~lt~~g~ 113 (131)
.|.|-.+|-+++.+|+.+. | -..++|-.++......-..++.+.. .|=++..-..|.+++ .+|-
T Consensus 67 ~i~~T~dH~~lt~~G~~~~~~~~W--k~~~eL~~gD~v~~~~i~~i~~~~~~~vydl~v~~~hnf~~-ang~ 135 (139)
T 2keq_A 67 LIRATKDHKFMTVDGQMLPIDEIF--ERELDLMRVDNLPNIKIATRKYLGKQNVYDIGVERDHNFAL-KNGF 135 (139)
T ss_dssp EEEEETTCEEEBTTCCEEEHHHHH--HHTCCBCCSSCCCCCCEEEEEEEEEECEEEEECSSCSEEEC-TTSC
T ss_pred EEEEeCCCcEEEECCccccchhhh--eehhhccCCCcccccceeEEEEcCCCcEEEEEECCCCccEe-eCCE
Confidence 3567778998888886554 4 3345665555422222222221111 566778888888886 3453
No 25
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=34.29 E-value=1.2e+02 Score=21.39 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=17.4
Q ss_pred CeEEEEEccCcc--eEE-EeCCeEEEEeCCCC
Q 035899 43 RFSNSSSCGLFH--SGL-VVNGKLWIWGKGDG 71 (131)
Q Consensus 43 ~~i~~is~G~~h--sal-~~~G~vy~wG~n~~ 71 (131)
..|..++...+. .+. ..||.|+.|-....
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 345566654443 232 34899999986643
No 26
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=32.71 E-value=92 Score=22.39 Aligned_cols=16 Identities=19% Similarity=-0.041 Sum_probs=12.9
Q ss_pred cceEEEeCCeEEEEeC
Q 035899 53 FHSGLVVNGKLWIWGK 68 (131)
Q Consensus 53 ~hsal~~~G~vy~wG~ 68 (131)
.|+++..+++||.+|-
T Consensus 245 ~~~~~~~~~~iyv~GG 260 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGG 260 (357)
T ss_dssp SCEEEEETTEEEEECC
T ss_pred cceEEEECCEEEEEcC
Confidence 4567778999999984
No 27
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=32.60 E-value=81 Score=22.28 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=13.1
Q ss_pred CcceEEEeCCeEEEEeC
Q 035899 52 LFHSGLVVNGKLWIWGK 68 (131)
Q Consensus 52 ~~hsal~~~G~vy~wG~ 68 (131)
..|+++..++++|.+|-
T Consensus 207 ~~~~~~~~~~~iyv~GG 223 (308)
T 1zgk_A 207 SGAGVCVLHNCIYAAGG 223 (308)
T ss_dssp BSCEEEEETTEEEEECC
T ss_pred ccceEEEECCEEEEEeC
Confidence 34676667999999984
No 28
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=32.36 E-value=2e+02 Score=23.38 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=31.1
Q ss_pred CcceEEEe--CCeEEEEeCCCCCCCCCCCCCCe-----eeeEEcCCCCCceEEEeccccceEEEecCCcEEEec
Q 035899 52 LFHSGLVV--NGKLWIWGKGDGGRLGFGHEDAA-----FVPTLNPYLDDHVRCIALGGVHSIALTSLAVEECNR 118 (131)
Q Consensus 52 ~~hsal~~--~G~vy~wG~n~~GqLG~g~~~~~-----~~P~~v~~l~~~i~~ia~G~~hs~~lt~~g~vy~wG 118 (131)
..|+++.. +|++|.+|--....--. .+... ..-+.+..+. ..=..|++++-.+++||++|
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~-~dv~~yd~~t~~W~~~~~~p------~~R~~h~~~~~~~~~iyv~G 507 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGL-SDNWIFDMKTREWSMIKSLS------HTRFRHSACSLPDGNVLILG 507 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBC-CCCEEEETTTTEEEECCCCS------BCCBSCEEEECTTSCEEEEC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcc-ccEEEEeCCCCcEEECCCCC------CCcccceEEEEcCCEEEEEC
Confidence 35786665 99999998432211000 01001 1122232222 12246777775588999987
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=32.18 E-value=1.3e+02 Score=20.92 Aligned_cols=51 Identities=4% Similarity=-0.149 Sum_probs=28.4
Q ss_pred eCCeEEEEeCCCCCCCCCCCCCCeeeeEEcCCCCCceEEEecc---ccceEEEecCCcEEEecCC
Q 035899 59 VNGKLWIWGKGDGGRLGFGHEDAAFVPTLNPYLDDHVRCIALG---GVHSIALTSLAVEECNRCL 120 (131)
Q Consensus 59 ~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~i~~ia~G---~~hs~~lt~~g~vy~wG~~ 120 (131)
.||.|..|-.... + ....+..-...|..++.. ...-+....+|.|+.|...
T Consensus 93 ~dg~i~v~d~~~~-~----------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 93 SRGIIRIINPITM-Q----------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCEEEEECTTTC-C----------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEEchhc-e----------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 4889999964421 1 111122122256666654 3444555678999999653
No 30
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=27.39 E-value=33 Score=22.19 Aligned_cols=17 Identities=24% Similarity=-0.037 Sum_probs=13.0
Q ss_pred eEEEecCCcEEEecCCCC
Q 035899 105 SIALTSLAVEECNRCLIL 122 (131)
Q Consensus 105 s~~lt~~g~vy~wG~~~~ 122 (131)
++++++||++|. |.|.-
T Consensus 31 Aal~~~dG~i~~-G~NvE 47 (130)
T 2z3g_A 31 SAALSSDGRIFT-GVNVY 47 (130)
T ss_dssp EEEEETTSCEEE-EECCC
T ss_pred EEEEecCCeEEE-Eeccc
Confidence 456779999997 87754
No 31
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=26.15 E-value=31 Score=20.12 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=17.4
Q ss_pred eEEEeccccceEEEecCCcEE
Q 035899 95 VRCIALGGVHSIALTSLAVEE 115 (131)
Q Consensus 95 i~~ia~G~~hs~~lt~~g~vy 115 (131)
=..|.+|.+||++...+|.|.
T Consensus 48 G~nVg~GkD~TLfAl~~G~V~ 68 (69)
T 2ftc_O 48 GAHVGVGKNKCLYALEEGIVR 68 (69)
T ss_pred CCCeeecCCCcEEEccceEEe
Confidence 346789999999999999873
No 32
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=25.61 E-value=55 Score=21.07 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=23.2
Q ss_pred cccCceEEEEEe-----cCCCeEEEEecCCCCCCCC
Q 035899 2 KENDEELYIFSL-----MAEEALVVRLFNSENSPNW 32 (131)
Q Consensus 2 ~~~d~~l~~~~~-----~~~~~l~~~g~n~~gqlg~ 32 (131)
|..+|=||+=++ ..+++|...|.+.+|+|..
T Consensus 73 k~~~GWvYaeGLTh~e~d~~grLLlAGhd~~GkLav 108 (119)
T 1njh_A 73 KTEEGWIYAEGLTEYTVDEENRLLMAGHLPGGKLAI 108 (119)
T ss_dssp EESSSEEEEEEECEEEECTTCCEEEEEEETTTTEEE
T ss_pred EcCCCEEEEccceeeEEcCCCcEEEcccCCCCcEEE
Confidence 455677777444 4678999999999998854
No 33
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=21.74 E-value=38 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=16.9
Q ss_pred EEEeccccceEEEecCCcE
Q 035899 96 RCIALGGVHSIALTSLAVE 114 (131)
Q Consensus 96 ~~ia~G~~hs~~lt~~g~v 114 (131)
..|..|.+||++...+|.|
T Consensus 40 ~NVG~GkD~TLfAl~~G~V 58 (76)
T 3r8s_W 40 ANVGCGRDHTLFAKADGKV 58 (76)
T ss_dssp TTEEECTTSCEEESSSEEE
T ss_pred CCeeecCCCeEEEccCEEE
Confidence 3578899999999999999
No 34
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=21.65 E-value=45 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=12.9
Q ss_pred eEEEecCCcEEEecCCCC
Q 035899 105 SIALTSLAVEECNRCLIL 122 (131)
Q Consensus 105 s~~lt~~g~vy~wG~~~~ 122 (131)
++++++||+||. |.|.-
T Consensus 40 Aal~~~dG~i~~-G~NvE 56 (146)
T 2fr5_A 40 AALLTGDGRIFS-GCNIE 56 (146)
T ss_dssp EEEEETTSCEEE-EECBC
T ss_pred EEEEeCCCcEEE-EEecc
Confidence 456779999996 87753
No 35
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=20.67 E-value=68 Score=19.47 Aligned_cols=20 Identities=5% Similarity=-0.350 Sum_probs=15.2
Q ss_pred ccceEEEecCCcEEEe-cCCC
Q 035899 102 GVHSIALTSLAVEECN-RCLI 121 (131)
Q Consensus 102 ~~hs~~lt~~g~vy~w-G~~~ 121 (131)
...+++|+..+.+|.| |.+.
T Consensus 28 s~d~FILd~g~~iyvW~G~~s 48 (104)
T 1kcq_A 28 NGDCFILDLGNNIHQWCGSNS 48 (104)
T ss_dssp TTSEEEEECSSEEEEEECTTC
T ss_pred CCCeEEEeCCCEEEEEeCCCC
Confidence 4568888888899999 4443
No 36
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=20.33 E-value=45 Score=21.91 Aligned_cols=16 Identities=19% Similarity=-0.049 Sum_probs=11.9
Q ss_pred eEEEecCCcEEEecCCC
Q 035899 105 SIALTSLAVEECNRCLI 121 (131)
Q Consensus 105 s~~lt~~g~vy~wG~~~ 121 (131)
.+++++||+||+ |+|.
T Consensus 36 AAl~~~dG~i~~-G~Nv 51 (142)
T 1r5t_A 36 CSILTNNDVIFT-GANV 51 (142)
T ss_dssp EEEECTTSCEEE-EECB
T ss_pred EEEEeCCCCEEE-EEee
Confidence 455678999997 7664
Done!