Query 035901
Match_columns 415
No_of_seqs 27 out of 29
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 07:29:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09330 cell division protein 100.0 9.4E-36 2E-40 295.8 16.4 162 3-175 151-317 (384)
2 COG0206 FtsZ Cell division GTP 100.0 4.8E-33 1E-37 273.3 16.3 164 4-178 150-317 (338)
3 TIGR00065 ftsZ cell division p 100.0 4.8E-32 1E-36 265.4 16.3 164 3-177 155-325 (349)
4 PRK13018 cell division protein 100.0 3.7E-32 8.1E-37 269.7 15.6 165 3-178 166-333 (378)
5 cd02201 FtsZ_type1 FtsZ is a G 100.0 9.3E-31 2E-35 249.3 16.2 160 4-174 139-303 (304)
6 cd02191 FtsZ FtsZ is a GTPase 100.0 6.5E-29 1.4E-33 238.5 15.8 160 4-174 139-302 (303)
7 cd02202 FtsZ_type2 FtsZ is a G 99.9 3.4E-22 7.3E-27 195.5 15.7 156 4-174 153-341 (349)
8 PF12327 FtsZ_C: FtsZ family, 99.9 1.2E-21 2.6E-26 161.1 8.6 90 84-174 1-92 (95)
9 smart00865 Tubulin_C Tubulin/F 99.2 8.2E-11 1.8E-15 94.2 10.3 105 69-174 1-109 (120)
10 cd00286 Tubulin_FtsZ Tubulin/F 98.2 2.4E-06 5.3E-11 82.2 5.4 157 5-174 147-327 (328)
11 cd06059 Tubulin The tubulin su 95.2 0.0086 1.9E-07 59.7 1.5 74 5-88 148-224 (382)
12 cd02190 epsilon_tubulin The tu 94.9 0.015 3.2E-07 58.6 2.3 60 5-83 157-216 (379)
13 PTZ00387 epsilon tubulin; Prov 93.8 0.03 6.6E-07 58.3 1.8 71 5-85 189-289 (465)
14 PLN00220 tubulin beta chain; P 67.1 2.5 5.3E-05 43.8 1.0 71 5-85 189-262 (447)
15 cd02186 alpha_tubulin The tubu 67.1 3 6.4E-05 43.2 1.5 72 5-86 190-264 (434)
16 cd02187 beta_tubulin The tubul 60.7 3.3 7.2E-05 42.6 0.5 67 5-81 188-257 (425)
17 PRK13441 F0F1 ATP synthase sub 55.6 31 0.00068 31.2 5.8 76 113-195 100-176 (180)
18 PTZ00335 tubulin alpha chain; 54.0 5 0.00011 41.9 0.5 66 5-80 191-259 (448)
19 PF13549 ATP-grasp_5: ATP-gras 47.6 43 0.00094 32.1 5.6 107 63-179 2-135 (222)
20 PRK13434 F0F1 ATP synthase sub 39.8 68 0.0015 29.3 5.5 72 114-192 98-170 (184)
21 PTZ00010 tubulin beta chain; P 35.5 18 0.00038 37.8 1.1 68 5-82 189-259 (445)
22 PRK14474 F0F1 ATP synthase sub 34.9 2.5E+02 0.0055 27.3 8.7 118 38-195 126-245 (250)
23 PRK13430 F0F1 ATP synthase sub 34.7 1.1E+02 0.0024 30.1 6.3 55 115-171 195-249 (271)
24 cd05796 Ribosomal_P0_like Ribo 32.4 89 0.0019 28.4 4.9 73 3-85 9-101 (163)
25 PRK13436 F0F1 ATP synthase sub 30.7 86 0.0019 28.7 4.6 56 113-170 101-156 (179)
26 PRK08474 F0F1 ATP synthase sub 29.4 1.1E+02 0.0024 27.8 5.0 50 113-165 96-145 (176)
27 PLN00222 tubulin gamma chain; 29.4 15 0.00033 38.5 -0.5 66 5-80 192-260 (454)
28 PLN00221 tubulin alpha chain; 28.2 25 0.00054 36.9 0.8 66 5-80 191-259 (450)
29 cd02188 gamma_tubulin Gamma-tu 27.6 21 0.00045 37.3 0.1 67 5-81 190-259 (431)
30 PRK13429 F0F1 ATP synthase sub 26.2 1.7E+02 0.0037 26.3 5.6 72 114-192 102-174 (181)
31 COG0712 AtpH F0F1-type ATP syn 25.1 1.4E+02 0.003 27.8 5.0 75 114-195 102-177 (178)
32 TIGR03690 20S_bact_beta protea 22.4 74 0.0016 29.7 2.7 54 28-83 154-214 (219)
33 PRK05758 F0F1 ATP synthase sub 22.0 2.1E+02 0.0044 25.7 5.3 72 114-192 100-172 (177)
34 cd01464 vWA_subfamily VWA subf 21.2 1.8E+02 0.004 25.4 4.7 89 28-116 78-170 (176)
35 cd01852 AIG1 AIG1 (avrRpt2-ind 20.6 2.7E+02 0.0058 24.8 5.7 73 89-166 58-132 (196)
36 PF14084 DUF4264: Protein of u 20.4 1.1E+02 0.0024 24.3 2.8 37 133-171 13-49 (52)
No 1
>PRK09330 cell division protein FtsZ; Validated
Probab=100.00 E-value=9.4e-36 Score=295.84 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=156.9
Q ss_pred HHHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHh
Q 035901 3 DLAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKIL 80 (415)
Q Consensus 3 ~lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL 80 (415)
.-+++|++++|++||||||+|++. + ..++++||+.||++|..+|++|+++|+.+ |++|+||+||+++|
T Consensus 151 ~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~Af~~ad~vL~~~v~~It~~i~~p----------G~iNvDfaDvk~vm 220 (384)
T PRK09330 151 EGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITKP----------GLINLDFADVKTVM 220 (384)
T ss_pred HHHHHHHHHCCEEEEEecHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----------CcccCCHHHHHHHH
Confidence 458899999999999999999998 5 69999999999999999999999999999 99999999999999
Q ss_pred hccCceeEecccccchhhHHH--HHhhhCCccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEee
Q 035901 81 GNYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSF 157 (415)
Q Consensus 81 ~~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~ 157 (415)
++.|.|+||||.|+|++|+.+ +.|++||||+.. |++|++ +||||+|+.+|++.|++++.+.|++.++++.+||||.
T Consensus 221 ~~~G~a~~G~G~a~g~~ra~~A~~~Ai~spLl~~~~i~~A~~-vLv~I~g~~~l~l~e~~~~~~~i~~~~~~~a~Ii~G~ 299 (384)
T PRK09330 221 SEMGLAMMGIGEASGEDRAREAAEKAISSPLLEDVDISGAKG-VLVNITGGPDLTLFEVEEAAEIIREAADPDANIIFGT 299 (384)
T ss_pred hcCCeEEEEEEEecCccHHHHHHHHHHhCcCcCCCChhhcce-EEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 999999999999999999999 999999999965 999999 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCCeEEEEEEEe
Q 035901 158 VHEPNLEPDLLVTTVVTL 175 (415)
Q Consensus 158 ~~dp~ledel~VT~Iatl 175 (415)
++||+++++++||+|||=
T Consensus 300 ~~d~~l~~~i~VtviatG 317 (384)
T PRK09330 300 VIDEELGDEIRVTVIATG 317 (384)
T ss_pred eeCCCcCCeEEEEEEEcc
Confidence 999999999999999974
No 2
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.8e-33 Score=273.28 Aligned_cols=164 Identities=16% Similarity=0.248 Sum_probs=158.9
Q ss_pred HHHHHHhccceEEEecCcccccc-ccccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhc
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-DSVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGN 82 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~ 82 (415)
=|++|++++|++||||||+||+. ++.++.+||+.||+++..+|+||+++|+.+ |++|||||||+++|++
T Consensus 150 gi~~L~~~~DtlIvi~Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~i~e~I~~~----------glinvDfaDv~~vm~~ 219 (338)
T COG0206 150 GIEELREVVDTLIVIPNDKLLKGKDKTPIAEAFNEADDVLGNAVKGITELITKP----------GLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHhCCcEEEEecHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHhccC----------ceEeecHHHHHHHHhc
Confidence 37899999999999999999999 899999999999999999999999999999 9999999999999999
Q ss_pred cCceeEecccccchhhHHH--HHhhhCCccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeec
Q 035901 83 YKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVH 159 (415)
Q Consensus 83 aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~ 159 (415)
.|.|+||||.+.+++|+.+ +.|++||||+.. |+||++ +|+||+|+.||++.|+.++.+.|++.++++.+||||..+
T Consensus 220 ~G~A~mG~g~~~~~~r~~~a~~~A~~~pLl~~~~i~gA~~-~Lv~i~g~~dl~l~ev~~~~~~i~~~i~~~~~vi~G~~~ 298 (338)
T COG0206 220 GGFALMGIGRASGEDRAREAVEKALNSPLLDDVDIEGAKG-ALINITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYI 298 (338)
T ss_pred CCceeEEEeeccchhHHHHHHHHHhcCCcccccccccccc-eEEEEecCCccCHHHHHHHHHHHHHHhCCCceEEEcccc
Confidence 9999999999999999999 999999999955 999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEEecCc
Q 035901 160 EPNLEPDLLVTTVVTLGLV 178 (415)
Q Consensus 160 dp~ledel~VT~Iatl~~~ 178 (415)
||+++++++|++|+|=-..
T Consensus 299 d~~~~~~v~v~vi~tg~~~ 317 (338)
T COG0206 299 DPGLRDEVRVLVIATGIRS 317 (338)
T ss_pred CCCCCceEEEEEEEecccc
Confidence 9999999999999986543
No 3
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.98 E-value=4.8e-32 Score=265.36 Aligned_cols=164 Identities=18% Similarity=0.280 Sum_probs=157.4
Q ss_pred HHHHHHHhccceEEEecCcccccc-ccccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 3 DLAAKLQDHINFYIDIDTDRLLEK-DSVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 3 ~lI~kLqe~vd~lIVI~nDrLLe~-D~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
.-+++|++++|++|+||||+|++. +..++++||+.+|++|..+|++|+++|..+ |++|+||+||+++|+
T Consensus 155 ~~l~~L~~~~D~vividNd~L~~~~~~~~i~~af~~~N~iia~~i~~it~~ir~~----------g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 155 EGLERLKQAVDTLIVIPNDKLLEVVPNLPLNDAFKVADDVLVRAVKGISELITKP----------GLINIDFADVRAVMS 224 (349)
T ss_pred HHHHHHHHhCCEEEEEeCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHHhhccC----------CcCcCCHHHHHHHHh
Confidence 357899999999999999999998 569999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchh---hHHH--HHhhhCCccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEE
Q 035901 82 NYKEAKIGFGAGSNIK---TSIL--QAIYDCPFIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIV 155 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~---rAI~--qaa~~sPlLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIf 155 (415)
+.|.|+||||.|.|++ |+.+ +.|++||||+.. |++|++ +|+||+|+.++++.|++++.+.|++.++++.+|||
T Consensus 225 ~~G~a~iG~g~~~g~~~~~r~~~A~~~al~~pLl~~~~i~~A~~-~Lv~i~~~~~l~l~ev~~~~~~i~~~~~~~~~Ii~ 303 (349)
T TIGR00065 225 GGGVAMMGIGEALGEDTANRAFEAVRKALSSPLLDVDKISGAKG-ALVHITGGADLTLLEAEEIQEIITSELDQDANIIW 303 (349)
T ss_pred cCCeEEEEEEEecCCcchHHHHHHHHHHHhCCCcCCcccccccE-EEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 9999999999999999 8888 999999999998 999999 99999999999999999999999999999999999
Q ss_pred eeecCCCCCCCeEEEEEEEecC
Q 035901 156 SFVHEPNLEPDLLVTTVVTLGL 177 (415)
Q Consensus 156 g~~~dp~ledel~VT~Iatl~~ 177 (415)
|.++||+++++++||+|||=-.
T Consensus 304 G~~~d~~l~~~i~VtiIatG~~ 325 (349)
T TIGR00065 304 GAIIDPNLEDEIRVTIVATGVK 325 (349)
T ss_pred EEeeCcccCCcEEEEEEEecCC
Confidence 9999999999999999998543
No 4
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.98 E-value=3.7e-32 Score=269.66 Aligned_cols=165 Identities=14% Similarity=0.220 Sum_probs=158.5
Q ss_pred HHHHHHHhccceEEEecCcccccc-ccccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 3 DLAAKLQDHINFYIDIDTDRLLEK-DSVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 3 ~lI~kLqe~vd~lIVI~nDrLLe~-D~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
.-+++|++++|++||||||+|++. ...++++||+.+|++|..+|++|+++|..+ |++|+||+||+++|+
T Consensus 166 ~gL~~L~e~~D~vividNd~L~~i~~~~~i~~af~~~N~iIa~~I~~It~~i~~~----------G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 166 EGIERLREAADTVIVIDNNRLLDIVPNLPIADAFSVADEVIAETVKGITETITKP----------SLINLDFADVKSVMK 235 (378)
T ss_pred HHHHHHHHhCCEEEEEecHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhcccC----------CceecCHHHHHHHhc
Confidence 458899999999999999999998 789999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeec
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVH 159 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~ 159 (415)
+.|.|.||||.+.|++|+.+ +.|++||||+..|++|++ +|+||+|+.++++.|+.++.+.|++.++.+.+|+||.++
T Consensus 236 ~~G~a~iG~G~a~g~~r~~~Av~~Al~spLL~~di~~A~~-~Lv~I~g~~~l~l~ev~~~~~~i~~~~~~~a~Ii~G~~~ 314 (378)
T PRK13018 236 GGGVAMMGVGEAKGQNRAMEAVRAALANPLLDVDYRGAKG-ALVHITGGPDLTLKEANEAASRITEELDPEANIIWGARI 314 (378)
T ss_pred cCCEEEEEEEEecCCcHHHHHHHHHHhCCCcCCChhhhce-EEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEEEee
Confidence 99999999999999999999 889999999988999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEEecCc
Q 035901 160 EPNLEPDLLVTTVVTLGLV 178 (415)
Q Consensus 160 dp~ledel~VT~Iatl~~~ 178 (415)
||+++++|+||+|||=-.+
T Consensus 315 d~~l~~~v~VtvIatG~~~ 333 (378)
T PRK13018 315 DPDMEGKVRVMVIMTGVKS 333 (378)
T ss_pred CCCCCCcEEEEEEEeCCCC
Confidence 9999999999999985443
No 5
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=9.3e-31 Score=249.27 Aligned_cols=160 Identities=22% Similarity=0.330 Sum_probs=155.2
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
-+++|++++|.+|+||||+|++. + ..++++||+.+|+++..+|++|++++..+ |++|+||+||+++|+
T Consensus 139 ~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~af~~~n~~ia~~i~~it~~~~~~----------g~invD~~dv~~vl~ 208 (304)
T cd02201 139 GLEELRKHVDTLIVIPNDKLLEVVDKNLPLLEAFKLADDVLAQAVKGISDLITKP----------GLINLDFADVKTVMK 208 (304)
T ss_pred HHHHHHHhCCEEEEEecHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHhccC----------ccccCCHHHHHHHhc
Confidence 47899999999999999999998 5 69999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeee
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFV 158 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~ 158 (415)
+.|.|.||||.+.|.+|+.+ +.|++||||+.. |++|++ +|+||+|++++++.|++++.+.+++.++.+.+||||..
T Consensus 209 ~~G~a~ig~g~~~g~~r~~~Av~~Al~~pLl~~~~i~~A~~-~Lv~I~~~~~l~l~e~~~~~~~i~~~~~~~~~ii~G~~ 287 (304)
T cd02201 209 NKGVALMGIGEASGENRAIEAAEKAISSPLLEDDSISGAKG-VLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGAT 287 (304)
T ss_pred cCCeEEEEEEEecCchHHHHHHHHHHhCcCcCCCChhcccE-EEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEeee
Confidence 99999999999999999888 888999999988 999999 99999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEEEE
Q 035901 159 HEPNLEPDLLVTTVVT 174 (415)
Q Consensus 159 ~dp~ledel~VT~Iat 174 (415)
+||+++++++||+|||
T Consensus 288 ~d~~l~~~v~Vtiiat 303 (304)
T cd02201 288 IDESLEDEIRVTVIAT 303 (304)
T ss_pred eCCCCCCeEEEEEEEe
Confidence 9999999999999997
No 6
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.96 E-value=6.5e-29 Score=238.47 Aligned_cols=160 Identities=12% Similarity=0.136 Sum_probs=154.7
Q ss_pred HHHHHHhccceEEEecCcccccc-ccccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhc
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-DSVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGN 82 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~ 82 (415)
=+++|++++|.+|+||||+|++. ...++++||+.+|+++..+|++|++++.-+ |.+|+||+||+++|++
T Consensus 139 ~l~~L~~~~D~~iv~dN~~L~~~~~~~~~~~af~~~N~~ia~~i~~it~~i~~~----------g~invD~~dv~~~l~~ 208 (303)
T cd02191 139 GFQTLVREVDNLMVIPNEKLRQIGEKASLEGAFDHADEVLVRAVGGLFGAIEIE----------GEINVDFADVKNVMDG 208 (303)
T ss_pred HHHHHHHhCCEEEEEehHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhhccC----------CcccCCHHHHHHHhcc
Confidence 47899999999999999999999 468999999999999999999999999999 9999999999999999
Q ss_pred cCceeEecccccchhhHHH--HHhhhCCccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeec
Q 035901 83 YKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVH 159 (415)
Q Consensus 83 aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~ 159 (415)
.|.|.||||.+.|++|+.+ +.|+++|||+.. |++|++ +|+||+|+.+|++.|+.++.+.+++.+++..+|+||..+
T Consensus 209 ~G~a~ig~g~~~g~~~~~~a~~~Al~~pll~~~~~~~A~~-~Lv~i~g~~~l~~~e~~~~~~~i~~~~~~~~~i~~G~~~ 287 (303)
T cd02191 209 GGVAMVGYGSEDVTNRATEAVRKAALGPLLLPCEIEGAEG-ALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYI 287 (303)
T ss_pred CCeEEEEEEEecCchHHHHHHHHHHhCCCCCCCCcccCCE-EEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEeeee
Confidence 9999999999999999999 999999999965 999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEE
Q 035901 160 EPNLEPDLLVTTVVT 174 (415)
Q Consensus 160 dp~ledel~VT~Iat 174 (415)
+|+++++++||+|||
T Consensus 288 ~~~~~~~v~v~vi~t 302 (303)
T cd02191 288 DNAPRDKVAVSIVLT 302 (303)
T ss_pred CCCCCCeEEEEEEec
Confidence 999999999999996
No 7
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.88 E-value=3.4e-22 Score=195.48 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=142.1
Q ss_pred HHHHHHhccceEEEecCccccccccccHHHHHHHhhHHHHHHhhHHHHHh-----hcchhhhhhhhccCccccChHHHHH
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEKDSVTLDEALKTANNAVFLAVNAISTLS-----SDMHRKLIDIVHSNVKELKVSEIFK 78 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~D~vTL~EAfk~Annal~~gIkgISdlI-----s~~h~~f~~~~~~glinldfaDVr~ 78 (415)
=+++|++++|++|++|||+|++.. .++.+||+.+|+++..+|++++..+ ..+ |.+|+||+||++
T Consensus 153 ~l~~L~~~~D~viv~dNd~L~~~~-~~~~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~----------g~invD~~dv~~ 221 (349)
T cd02202 153 SLDALSEEADAIILFDNDAWKRKG-ESVEEAYDRINEEIARRIGLLLRAGEANAGDSV----------GESVLDASEVIN 221 (349)
T ss_pred HHHHHHHhCCEEEEEehHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCC----------CeEeccHHHHHH
Confidence 368999999999999999999984 3678999999999999998888776 447 999999999999
Q ss_pred HhhccCceeEecccccc-----------------------hhhHHH--HHhhhCCcccc-ccccCCceEEEEeccCc-cc
Q 035901 79 ILGNYKEAKIGFGAGSN-----------------------IKTSIL--QAIYDCPFIGA-GVKELNGMVICVVATSN-II 131 (415)
Q Consensus 79 iL~~aGeA~iGfGaG~g-----------------------~~rAI~--qaa~~sPlLe~-gI~gan~~vlinItgs~-dl 131 (415)
+|++.|.+.||||.+.+ .+|+++ +.|+.+|||.. -|++|++ +|+||+|+. +|
T Consensus 222 ~L~~~G~~~iG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~a~~~a~~~~L~~~~d~~~A~~-~Li~i~g~~~~l 300 (349)
T cd02202 222 TLSGGGFATIGYAREDLETGPSDGKFRLREEDDEVDEKESISRITTLARKAAYGELTVPCDLTSADR-ALIVIAGPPEEL 300 (349)
T ss_pred HhccCCeEEEEEEEEcccccccccccccccccccccccchhhHHHHHHHHHHcCCCCCCCCcccCcE-EEEEEEeCcccc
Confidence 99999999999999988 788888 89999999875 5999999 999999998 59
Q ss_pred CchhhHHHHHHHHHhhcccCCeEEeeecCCCC-CCCeEEEEEEE
Q 035901 132 GNNDLQSFLHTFRQITEYTGETIVSFVHEPNL-EPDLLVTTVVT 174 (415)
Q Consensus 132 ~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~l-edel~VT~Iat 174 (415)
++.|+.++.+.+++.++ +++|+...+|.. .++|+||+|+|
T Consensus 301 ~~~~~~~~~~~i~~~~~---~~~~~~g~~p~~~~~~v~v~vi~t 341 (349)
T cd02202 301 SRKGIEDGRKWLDEEIG---GVEVRSGDYPVPGGDEVAVLVLLS 341 (349)
T ss_pred CHHHHHHHHHHHHHHcC---CeEEEEEecCCCCCCeEEEEEEEc
Confidence 99999999999999987 789999999988 57999999987
No 8
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=99.86 E-value=1.2e-21 Score=161.08 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=83.6
Q ss_pred CceeEecccccchhhHHH--HHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCC
Q 035901 84 KEAKIGFGAGSNIKTSIL--QAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEP 161 (415)
Q Consensus 84 GeA~iGfGaG~g~~rAI~--qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp 161 (415)
|.|+||||.|.|++|+.+ +.|++||||+..|++|++ +|+||+|+.+++++|++++.+.||+.++.+.+||||.++||
T Consensus 1 G~A~iGiG~a~G~~r~~~Av~~Al~spLl~~~i~~A~~-vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~ 79 (95)
T PF12327_consen 1 GRAMIGIGEASGENRAEEAVEQALNSPLLDVDIKGAKG-VLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASIDE 79 (95)
T ss_dssp EEEEEEEEEEESTTHHHHHHHHHHTSTTSTS-GGG-SE-EEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-T
T ss_pred CeEEEEEEEECCccHHHHHHHHHHhCccccCChHHhce-EEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEECC
Confidence 689999999999999999 999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEE
Q 035901 162 NLEPDLLVTTVVT 174 (415)
Q Consensus 162 ~ledel~VT~Iat 174 (415)
+++++++||+|||
T Consensus 80 ~l~d~i~VtiIaT 92 (95)
T PF12327_consen 80 ELEDEIRVTIIAT 92 (95)
T ss_dssp TGTTEEEEEEEEE
T ss_pred CCCCeEEEEEEEE
Confidence 9999999999997
No 9
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=99.23 E-value=8.2e-11 Score=94.23 Aligned_cols=105 Identities=13% Similarity=0.223 Sum_probs=93.7
Q ss_pred cccChHHHHHHhhccCceeEecccccchhhHHH--HHhhhCCccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHH
Q 035901 69 KELKVSEIFKILGNYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQ 145 (415)
Q Consensus 69 inldfaDVr~iL~~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~ 145 (415)
+|+||+|++++|..+|.+.+|||-+.|.+|+.+ +.+..+|||+.. +..|.+ ++.+++++.++++.|+..++..+++
T Consensus 1 in~D~~dl~~~L~p~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~a~~-~~~~l~~~~~~~~~ev~~~~~~i~~ 79 (120)
T smart00865 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEPSNIMGAKG-VLVNITGGPDLTLKEVNEAMERIRE 79 (120)
T ss_pred CCCchHHHHHhccCCCeEEEEEEEecCCChHHHHHHHHHhCcccCCcchhhcCc-eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999988777777 899999999976 999998 6669999999999999999999999
Q ss_pred hhcccCCeEEeeecCCCC-CCCeEEEEEEE
Q 035901 146 ITEYTGETIVSFVHEPNL-EPDLLVTTVVT 174 (415)
Q Consensus 146 atg~~~DIIfg~~~dp~l-edel~VT~Iat 174 (415)
-.+....+.||...++.+ ...+.|+.|+|
T Consensus 80 ~~~~~~~v~w~~~~~~~~~~~~~~i~ni~t 109 (120)
T smart00865 80 KADPDAFIIWGPVIDEELGGDEIRVTVIAT 109 (120)
T ss_pred hcCCCceEEEccccCCcCCCCcEEEEEEec
Confidence 876667789999899999 77888887665
No 10
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=98.16 E-value=2.4e-06 Score=82.23 Aligned_cols=157 Identities=10% Similarity=0.074 Sum_probs=120.0
Q ss_pred HHHHHhccceEEEecCccccccc--cc-cHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHh-
Q 035901 5 AAKLQDHINFYIDIDTDRLLEKD--SV-TLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKIL- 80 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~D--~v-TL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL- 80 (415)
+..|.+++|..|++||++|.+.- .. ....+|...|+++-..|.+++..+.-+ |.+|+|+.++...|
T Consensus 147 l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~----------g~~n~d~~~~~~~l~ 216 (328)
T cd00286 147 LHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFD----------GSLNVDLRELSENLV 216 (328)
T ss_pred HHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccC----------ccccchHHHHhhhcC
Confidence 57899999999999999999872 22 345799999999999999999999888 99999997777655
Q ss_pred --hccCceeEecccccch------hhHHH---HHhhhCCccccc----cccCCceEEEEeccCcccCchhhHHHHHHHHH
Q 035901 81 --GNYKEAKIGFGAGSNI------KTSIL---QAIYDCPFIGAG----VKELNGMVICVVATSNIIGNNDLQSFLHTFRQ 145 (415)
Q Consensus 81 --~~aGeA~iGfGaG~g~------~rAI~---qaa~~sPlLe~g----I~gan~~vlinItgs~dl~l~D~~s~l~~~R~ 145 (415)
...+-..+||+-..+. ...++ +.++++++.... ...+-+ +++.+.|. .+..|+......+++
T Consensus 217 p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~rG~--~~~~~v~~~~~~l~~ 293 (328)
T cd00286 217 PFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIA-ALLLVRGP--VSPSEVREGIARVAP 293 (328)
T ss_pred CCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHH-HHHHHhCC--CChHHHHHHHHHHHH
Confidence 6777888888876652 22222 677788876632 444455 55666664 488899888888887
Q ss_pred hhc----ccCCeEEeeecCCCC-CCCeEEEEEEE
Q 035901 146 ITE----YTGETIVSFVHEPNL-EPDLLVTTVVT 174 (415)
Q Consensus 146 atg----~~~DIIfg~~~dp~l-edel~VT~Iat 174 (415)
... ....+.+|....|.. +.+..|++|++
T Consensus 294 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~N 327 (328)
T cd00286 294 RTSHLSWSPPGIKVGVSPTPPASEHKVSALLLSN 327 (328)
T ss_pred hCCcCCcCCCCEeEeecCCCCCCCcCeEEEEecc
Confidence 654 255788999988887 88888888764
No 11
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=95.18 E-value=0.0086 Score=59.73 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccH-HHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTL-DEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL-~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|..|+++||.|.+. . ...+ ..+|...|+++-..|.+|+..+.-+ |..|+|+.|+.+.|-
T Consensus 148 l~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~----------g~~n~d~~~i~~~Lv 217 (382)
T cd06059 148 LNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFP----------GYLNFDLRKLATNLV 217 (382)
T ss_pred HHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccC----------CCcCCCHHHHhhhcC
Confidence 5689999999999999999987 3 3233 5799999999999999999999888 999999999999887
Q ss_pred ccCceeE
Q 035901 82 NYKEAKI 88 (415)
Q Consensus 82 ~aGeA~i 88 (415)
-+..-.+
T Consensus 218 P~p~~~f 224 (382)
T cd06059 218 PFPRLHF 224 (382)
T ss_pred CCCCcee
Confidence 7666443
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=94.92 E-value=0.015 Score=58.64 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHHHhccceEEEecCccccccccccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhcc
Q 035901 5 AAKLQDHINFYIDIDTDRLLEKDSVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGNY 83 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~D~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~a 83 (415)
+.+|.+++|+.|++|||.|. +|...|+++...|.+++..+.-+ |..|+|+.|+.+-|=-+
T Consensus 157 l~~l~~~~d~~i~~~N~~l~---------~~~~~N~~ia~~i~~~t~~~rf~----------g~~n~d~~~i~~nLvP~ 216 (379)
T cd02190 157 LRELIEHADCVLPIENQALV---------PFDAMNSIVANLLLNLTSSMRFE----------GSLNVDLNEITMNLVPF 216 (379)
T ss_pred HHHHHHhCCeeEEeccHHHH---------HHHHHHHHHHhhhcCccceeecc----------cccccchhhhccccccC
Confidence 57899999999999999998 89999999999999999888878 99999999998876543
No 13
>PTZ00387 epsilon tubulin; Provisional
Probab=93.84 E-value=0.03 Score=58.31 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=59.6
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHH----------------------------HHHHHhhHHHHHHhhHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLD----------------------------EALKTANNAVFLAVNAISTLSS 54 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~----------------------------EAfk~Annal~~gIkgISdlIs 54 (415)
+..|.+++|.+|+++||.|.+. + ...+. .+|...|+++...+.+++..+.
T Consensus 189 l~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~R 268 (465)
T PTZ00387 189 LRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMR 268 (465)
T ss_pred HHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccccccccccccccccccccccccHHHHHHHHHhhhccccceee
Confidence 5789999999999999999987 4 33333 6899999999999999998887
Q ss_pred cchhhhhhhhccCccccChHHHHHHhhccCc
Q 035901 55 DMHRKLIDIVHSNVKELKVSEIFKILGNYKE 85 (415)
Q Consensus 55 ~~h~~f~~~~~~glinldfaDVr~iL~~aGe 85 (415)
-+ |.+|+|+.|+.+-|=-+-.
T Consensus 269 f~----------g~~n~dl~~i~~nLvP~P~ 289 (465)
T PTZ00387 269 FE----------GSLNVDINEITTNLVPYPR 289 (465)
T ss_pred cC----------CccCCCHHHHHhhcCCCCC
Confidence 77 9999999999887755443
No 14
>PLN00220 tubulin beta chain; Provisional
Probab=67.07 E-value=2.5 Score=43.85 Aligned_cols=71 Identities=8% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccH-HHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTL-DEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL-~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|.+|++|||+|... . ...+ .-+|...|+++...+.+++.-+-=+ |-.|.|..++.+-|=
T Consensus 189 l~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~slRFp----------G~ln~~l~~l~~nLV 258 (447)
T PLN00220 189 VHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP----------GQLNSDLRKLAVNLI 258 (447)
T ss_pred HHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhhccC----------CcCCccHHHHHHHhC
Confidence 4679999999999999999876 2 2222 2489999999999998887665555 888888777776655
Q ss_pred ccCc
Q 035901 82 NYKE 85 (415)
Q Consensus 82 ~aGe 85 (415)
-+..
T Consensus 259 P~P~ 262 (447)
T PLN00220 259 PFPR 262 (447)
T ss_pred Cccc
Confidence 4443
No 15
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=67.07 E-value=3 Score=43.19 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=53.3
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHH-HHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLD-EALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~-EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|..|++|||.|.+. . ...+. -+|..-|+++-..+.+++--+--+ |-.++|..|+.+-|=
T Consensus 190 l~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~~rf~----------g~~~~~l~~l~~nLv 259 (434)
T cd02186 190 THSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLRFD----------GALNVDLNEFQTNLV 259 (434)
T ss_pred HHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccceecC----------CccCCCHHHHHhhcc
Confidence 4689999999999999999886 2 22332 478899999988888887544434 777888877777665
Q ss_pred ccCce
Q 035901 82 NYKEA 86 (415)
Q Consensus 82 ~aGeA 86 (415)
-+...
T Consensus 260 P~P~l 264 (434)
T cd02186 260 PYPRI 264 (434)
T ss_pred ccccc
Confidence 55443
No 16
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=60.75 E-value=3.3 Score=42.64 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=50.3
Q ss_pred HHHHHhccceEEEecCcccccc-c-ccc-HHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVT-LDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vT-L~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|..|++|||.|.+. . ... -..+|...|+++-..|.+++--+--| |..|.|..++.+-|=
T Consensus 188 l~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~Rfp----------g~~n~dl~~l~~nLv 257 (425)
T cd02187 188 VHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLRFP----------GQLNSDLRKLAVNMV 257 (425)
T ss_pred HHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeeecC----------CccccCHHHHHHhcC
Confidence 4679999999999999999887 2 221 12479999999999998888665556 777777655555443
No 17
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=55.58 E-value=31 Score=31.24 Aligned_cols=76 Identities=9% Similarity=0.068 Sum_probs=60.6
Q ss_pred ccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEEEEEEecCcc-ccccchhhhhhh
Q 035901 113 GVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVTLGLVE-QASRKSSIFSRL 191 (415)
Q Consensus 113 gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT~Iatl~~~~-~~s~k~~~lS~L 191 (415)
-....++++.+.|+++.+|+..+...+.+.+++.+|. .|.+-..+||.+-+-++|.+ ++.. -+|.| |=|.+|
T Consensus 100 l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~~~--~v~l~~~vD~sliGG~~i~i----g~~~~D~Sik-~~L~~l 172 (180)
T PRK13441 100 EKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVLR--DPVFEETIDESLIAGAVVEF----EGKRLDVTVQ-GRLKKI 172 (180)
T ss_pred HHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHHCC--cceEEeeeChHHhCcEEEEE----CCEEEeHhHH-HHHHHH
Confidence 3455788899999999999999999999999999885 57777888999988888764 5544 57777 666777
Q ss_pred hhhh
Q 035901 192 AHHF 195 (415)
Q Consensus 192 a~HF 195 (415)
..+|
T Consensus 173 ~~~l 176 (180)
T PRK13441 173 AREV 176 (180)
T ss_pred HHHH
Confidence 7655
No 18
>PTZ00335 tubulin alpha chain; Provisional
Probab=54.01 E-value=5 Score=41.90 Aligned_cols=66 Identities=9% Similarity=0.204 Sum_probs=49.0
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHH-HHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLD-EALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKIL 80 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~-EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL 80 (415)
+..|.++.|..|+++||.|.+. . ...+. -+|..-|+++-..|.+++--+--+ |..+.|..++.+-|
T Consensus 191 l~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~~~rf~----------g~~~~dl~~l~~nL 259 (448)
T PTZ00335 191 THSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFD----------GALNVDLTEFQTNL 259 (448)
T ss_pred HHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhcccccccccc----------cccCCCHHHHhccc
Confidence 4689999999999999999865 2 22222 378999999999998888555444 77777776665544
No 19
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=47.61 E-value=43 Score=32.08 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=64.7
Q ss_pred hhccCccccChHHHHHHhhccCceeEecccccchhhHHH-HHhhhCCcccccc-------ccCCceEEEEeccCcccCch
Q 035901 63 IVHSNVKELKVSEIFKILGNYKEAKIGFGAGSNIKTSIL-QAIYDCPFIGAGV-------KELNGMVICVVATSNIIGNN 134 (415)
Q Consensus 63 ~~~~glinldfaDVr~iL~~aGeA~iGfGaG~g~~rAI~-qaa~~sPlLe~gI-------~gan~~vlinItgs~dl~l~ 134 (415)
++..|---|+..|.+.+|..||....-.-.-.....|.+ -.-+..|.--+.. .++-+ |.+||.+.+
T Consensus 2 A~~~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~Gg-V~L~l~~~~----- 75 (222)
T PF13549_consen 2 ALAEGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGG-VRLNLNSPE----- 75 (222)
T ss_dssp HHHTT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT--EEEEE-SHH-----
T ss_pred cccCCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCc-EEECCCCHH-----
Confidence 455677789999999999999999998888888888887 4466788655543 23456 888887554
Q ss_pred hhHHHHHHHHHhhc-------------------ccCCeEEeeecCCCCCCCeEEEEEEEecCcc
Q 035901 135 DLQSFLHTFRQITE-------------------YTGETIVSFVHEPNLEPDLLVTTVVTLGLVE 179 (415)
Q Consensus 135 D~~s~l~~~R~atg-------------------~~~DIIfg~~~dp~ledel~VT~Iatl~~~~ 179 (415)
++....+.+++.++ ...++++|..-||.++| ++.+.+|+..
T Consensus 76 ~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGP----vv~~G~GG~~ 135 (222)
T PF13549_consen 76 EVREAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGP----VVMFGLGGIF 135 (222)
T ss_dssp HHHHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETTTEE----EEEEEE-STT
T ss_pred HHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCC----EEEEcCCCce
Confidence 44444444444432 25578999999999998 3445666654
No 20
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=39.77 E-value=68 Score=29.31 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=56.8
Q ss_pred cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEEEEEEecCcc-ccccchhhhhhhh
Q 035901 114 VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVTLGLVE-QASRKSSIFSRLA 192 (415)
Q Consensus 114 I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT~Iatl~~~~-~~s~k~~~lS~La 192 (415)
....++++.+.|+++.+|+..+...+.+.+.+.+|. +|.+-..+||.+=+-++|.+ |+.. -.|.|+- |.+|.
T Consensus 98 ~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g~--~v~l~~~vDpsLIGG~ii~i----gd~viD~Svk~~-L~~l~ 170 (184)
T PRK13434 98 LDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFKS--EFILEVSEDKNLLGGFVVQF----NDLKIEKSIASQ-LGEIK 170 (184)
T ss_pred HHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHCC--EeEEEeeeChHHcCceEEEE----CCEEEeHhHHHH-HHHHH
Confidence 346677899999999999999999999999999984 78899999999988888764 5543 4555532 34444
No 21
>PTZ00010 tubulin beta chain; Provisional
Probab=35.48 E-value=18 Score=37.84 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=49.1
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccH-HHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTL-DEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL-~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|..|++|||.|.+. . ...+ .-.|..-|+++-..|.+++--+--+ |..|.|..++.+-|=
T Consensus 189 l~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~Rfp----------g~ln~dl~~l~tnLv 258 (445)
T PTZ00010 189 VHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLRFP----------GQLNSDLRKLAVNLV 258 (445)
T ss_pred HHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccceecC----------CcccccHHHHHHHHh
Confidence 4678999999999999999876 2 1111 1257788999998888887665555 777777766666554
Q ss_pred c
Q 035901 82 N 82 (415)
Q Consensus 82 ~ 82 (415)
-
T Consensus 259 P 259 (445)
T PTZ00010 259 P 259 (445)
T ss_pred c
Confidence 3
No 22
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=34.92 E-value=2.5e+02 Score=27.34 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=76.6
Q ss_pred hhHHHHHHhhHHHHHhh-cchhhhhhhhccCccccChHHHHHHhhccCceeEecccccchhhHHHHHhhhCCcccccccc
Q 035901 38 ANNAVFLAVNAISTLSS-DMHRKLIDIVHSNVKELKVSEIFKILGNYKEAKIGFGAGSNIKTSILQAIYDCPFIGAGVKE 116 (415)
Q Consensus 38 Annal~~gIkgISdlIs-~~h~~f~~~~~~glinldfaDVr~iL~~aGeA~iGfGaG~g~~rAI~qaa~~sPlLe~gI~g 116 (415)
++-++..+=|-+.++++ ..|++++|.+-+.+-+++.++-..+... . +
T Consensus 126 ~~la~~~A~kiL~~~~d~~~~~~lid~~i~~l~~l~~~~r~~l~~~-~-------------------------------~ 173 (250)
T PRK14474 126 GQQMVKIIRAALADLANATLEQQIVGIFIARLEHLSEAERQALANS-N-------------------------------T 173 (250)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcccCHHHHHHHHhh-h-------------------------------c
Confidence 34444444444444332 3477888887778888877766554432 1 1
Q ss_pred CCceEEEEeccCcccCchhhHHHHHHHHH-hhcccCCeEEeeecCCCCCCCeEEEEEEEecCccccccchhhhhhhhhhh
Q 035901 117 LNGMVICVVATSNIIGNNDLQSFLHTFRQ-ITEYTGETIVSFVHEPNLEPDLLVTTVVTLGLVEQASRKSSIFSRLAHHF 195 (415)
Q Consensus 117 an~~vlinItgs~dl~l~D~~s~l~~~R~-atg~~~DIIfg~~~dp~ledel~VT~Iatl~~~~~~s~k~~~lS~La~HF 195 (415)
... =+.|++..+|+..+-..+...+++ ..|....|-|-+ ||+|-.-+... .++.-.+-.=.+.|..|..||
T Consensus 174 ~~~--~~~i~ta~~l~~~~~~~~~~~l~~~~~~~~~~~~f~~--~p~li~Giel~----~~~~~i~ws~~~yl~~l~~~~ 245 (250)
T PRK14474 174 TPE--MLRIRTSFELSQDLRAQILESLHQTHLIPGTDIHFVT--SPELICGIELK----TEGYKIAWTLAEYLDALESQL 245 (250)
T ss_pred CCC--CeEEEeCCCCCHHHHHHHHHHHHHHhcCCCCceeeec--CcccccCeEEe----cCCceEeccHHHHHHHHHHHH
Confidence 111 267899999999999999999999 888888887766 77766555443 344434445556677776665
No 23
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=34.66 E-value=1.1e+02 Score=30.11 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=48.8
Q ss_pred ccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEEE
Q 035901 115 KELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTT 171 (415)
Q Consensus 115 ~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT~ 171 (415)
...++.+.+-|++..+|+..+.+.+.+.+.+.+|. +|.+-..+||.+=+-++|.+
T Consensus 195 ~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~--~V~l~~~VDpsLIGGivI~v 249 (271)
T PRK13430 195 AARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGR--PVHLNSEVDPSVLGGMRVQV 249 (271)
T ss_pred HHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHCC--ceEEEeeECccccCcEEEEE
Confidence 34577789999999999999999999999999985 68899999999999988875
No 24
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=32.43 E-value=89 Score=28.35 Aligned_cols=73 Identities=11% Similarity=0.220 Sum_probs=48.0
Q ss_pred HHHHHHHhccceEEEecCccccccccccHHHHHHH------hhHHHHHHhhH------------HHHHhhcchhhhhhhh
Q 035901 3 DLAAKLQDHINFYIDIDTDRLLEKDSVTLDEALKT------ANNAVFLAVNA------------ISTLSSDMHRKLIDIV 64 (415)
Q Consensus 3 ~lI~kLqe~vd~lIVI~nDrLLe~D~vTL~EAfk~------Annal~~gIkg------------ISdlIs~~h~~f~~~~ 64 (415)
+|.+.|.++ +.+++++.+-+--...-.|+..|+. =|+.++.|++. +++.+.|+
T Consensus 9 ~l~e~l~~y-~~v~iv~~~gl~~~ql~~iR~~lr~~~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~-------- 79 (163)
T cd05796 9 NIREAVDKY-KYIYVFSVDNMRNNKLKDIRQEWKDSRFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ-------- 79 (163)
T ss_pred HHHHHHHhC-CEEEEEEecCCCHHHHHHHHHHhcCCEEEEEchHHHHHHHhhCccccccccHHHHHHHhCCC--------
Confidence 333444433 6688999888766666667777763 47777877774 34445554
Q ss_pred ccCcc--ccChHHHHHHhhccCc
Q 035901 65 HSNVK--ELKVSEIFKILGNYKE 85 (415)
Q Consensus 65 ~~gli--nldfaDVr~iL~~aGe 85 (415)
.|++ |-|+.+++++|.+++.
T Consensus 80 -~~lift~~dp~~v~k~l~~~~~ 101 (163)
T cd05796 80 -VGLLFTNEPPEEVIEYFDSYSE 101 (163)
T ss_pred -EEEEEECCCHHHHHHHHHHcCC
Confidence 2332 5688899999988875
No 25
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=30.69 E-value=86 Score=28.68 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=49.6
Q ss_pred ccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEE
Q 035901 113 GVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVT 170 (415)
Q Consensus 113 gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT 170 (415)
-....++++.+-|++..+|+..+...+.+.+.+.+|. .|.+-...||.+=+-++|.
T Consensus 101 ~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g~--~v~l~~~vDpslIGGi~i~ 156 (179)
T PRK13436 101 LSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLNK--KVHLVNKIDPKLIAGIKIK 156 (179)
T ss_pred HHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHCC--eEEEEeecCHHHcCceEEE
Confidence 3556888899999999999999999999999999994 7899999999988877775
No 26
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=29.36 E-value=1.1e+02 Score=27.84 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=43.5
Q ss_pred ccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCC
Q 035901 113 GVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEP 165 (415)
Q Consensus 113 gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~led 165 (415)
-....++++.+.|++..+|+..+...+.+.+.+.+|. .|-+-...|| +++
T Consensus 96 ~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g~--~v~l~~~vD~-IGG 145 (176)
T PRK08474 96 QIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFNA--KIKLKQKKSD-YDG 145 (176)
T ss_pred HHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhCC--eEEEEEEEcC-CCC
Confidence 3566888899999999999999999999999999995 6777788888 665
No 27
>PLN00222 tubulin gamma chain; Provisional
Probab=29.35 E-value=15 Score=38.52 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=49.1
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHH-HHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLD-EALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKIL 80 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~-EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL 80 (415)
+..|.+++|..|++||+.|.+. . ...+. -.|..-|+++-..+.+++--+.-+ |..|.|..++.+-|
T Consensus 192 l~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T~s~Rfp----------g~ln~dl~~l~~nL 260 (454)
T PLN00222 192 LKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTTTLRYP----------GYMNNDLVGLLASL 260 (454)
T ss_pred HHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcccccCCC----------CccCCCHHHHhhhc
Confidence 4678999999999999999886 2 11111 257788999998888888666666 77888877776544
No 28
>PLN00221 tubulin alpha chain; Provisional
Probab=28.19 E-value=25 Score=36.90 Aligned_cols=66 Identities=11% Similarity=0.209 Sum_probs=47.0
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHH-HHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLD-EALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKIL 80 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~-EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL 80 (415)
+..|.++.|.++++|||.|.+. . ..-++ -.|..-|+++-..|.+++-.+--+ |..|.|..++.+-|
T Consensus 191 l~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~s~RF~----------g~ln~dl~~l~~nL 259 (450)
T PLN00221 191 THSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTASLRFD----------GALNVDITEFQTNL 259 (450)
T ss_pred HHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccccccccc----------ccccCCHHHHHHhc
Confidence 4678999999999999999886 2 11111 247778999988888888655555 66777766665544
No 29
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=27.64 E-value=21 Score=37.27 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=44.7
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccH-HHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTL-DEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL-~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|..|+++||.|.+. . ...+ ...|..-|+++-..+.+++--+--+ |..|.|..++.+-|=
T Consensus 190 l~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~~~Rf~----------g~ln~dl~~i~tnLv 259 (431)
T cd02188 190 LKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTTLRYP----------GYMNNDLISLIASLI 259 (431)
T ss_pred HHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCcccceecC----------CccCCCHHHHHHhcC
Confidence 4578899999999999988775 2 1111 1357777888777777766555544 667777666655443
No 30
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=26.20 E-value=1.7e+02 Score=26.28 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=55.0
Q ss_pred cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEEEEEEecCcc-ccccchhhhhhhh
Q 035901 114 VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVTLGLVE-QASRKSSIFSRLA 192 (415)
Q Consensus 114 I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT~Iatl~~~~-~~s~k~~~lS~La 192 (415)
+...++.+.+.|++..+++..+...+.+.+.+.+| ..+.+=...||.+-.-+++.+ ++.. .+|.+ +-|.++.
T Consensus 102 ~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~~--~~~~~~~~vd~sligG~~i~~----~~~~iD~Si~-~~L~~l~ 174 (181)
T PRK13429 102 ADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMTG--KKVELDTAVDPSLIGGVVVKI----GDKVLDASVR-TQLRRLK 174 (181)
T ss_pred HHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHHC--CEEEEEeeeChhhhCceEEEE----CCEEEehhHH-HHHHHHH
Confidence 44567779999999999999999999999999888 566677788999988888765 4433 45555 4444443
No 31
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=25.11 E-value=1.4e+02 Score=27.80 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=59.1
Q ss_pred cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEEEEEEecCcc-ccccchhhhhhhh
Q 035901 114 VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVTLGLVE-QASRKSSIFSRLA 192 (415)
Q Consensus 114 I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT~Iatl~~~~-~~s~k~~~lS~La 192 (415)
....++++...|++...|+..+...+...+.+-+| .++-+-..+||.+=+-++|-+ |+.- -.|.| |-|.+|+
T Consensus 102 ~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~--~~v~i~~~VD~sliGG~iI~v----gd~viD~Svr-~~L~~l~ 174 (178)
T COG0712 102 AAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFG--KKVKLNNKIDPSLIGGLIIKV----GDEVIDGSVR-GKLKRLA 174 (178)
T ss_pred HHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhC--CCceEEeeeCHHHhCceEEEE----CCEEEechHH-HHHHHHH
Confidence 45678889999999999999999999999999999 888899999999988887754 4433 23333 4566666
Q ss_pred hhh
Q 035901 193 HHF 195 (415)
Q Consensus 193 ~HF 195 (415)
.++
T Consensus 175 ~~l 177 (178)
T COG0712 175 KAL 177 (178)
T ss_pred Hhc
Confidence 543
No 32
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=22.37 E-value=74 Score=29.66 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=38.7
Q ss_pred cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhh------hhhh-ccCccccChHHHHHHhhcc
Q 035901 28 SVTLDEALKTANNAVFLAVNAISTLSSDMHRKL------IDIV-HSNVKELKVSEIFKILGNY 83 (415)
Q Consensus 28 ~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f------~~~~-~~glinldfaDVr~iL~~a 83 (415)
..|++||++.|=++++.+.. -|+.++....+ +..+ ++|+..|+..||.++|+.-
T Consensus 154 ~ms~eeai~l~~~al~~~~~--~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~~~ 214 (219)
T TIGR03690 154 DLDEDDALRVAVEALYDAAD--DDSATGGPDLVRGIYPTVVVITADGARRVPESELEELARAI 214 (219)
T ss_pred CcCHHHHHHHHHHHHHHHHh--cccccCCcccccccccEEEEEccCceEEcCHHHHHHHHHHH
Confidence 57899999999999988877 34444442111 2222 5799999999999999753
No 33
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=22.04 E-value=2.1e+02 Score=25.69 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=54.5
Q ss_pred cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEEEEEEecCcc-ccccchhhhhhhh
Q 035901 114 VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVTLGLVE-QASRKSSIFSRLA 192 (415)
Q Consensus 114 I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT~Iatl~~~~-~~s~k~~~lS~La 192 (415)
+...++++.+.|++...|+..+...+.+.+++.+|.. +-+-...||++-.-+.+.+ ++.. ..|.+ +-|.++.
T Consensus 100 ~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~~~--v~l~~~vd~~ligG~~i~~----~~~~~d~Si~-~~L~~l~ 172 (177)
T PRK05758 100 RAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLGRK--VKLNEKVDPSLIGGVIIKV----GDRVIDGSVR-GKLERLK 172 (177)
T ss_pred HHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHHCCe--eEEEeeEChHHhCceEEEE----CCEEeehhHH-HHHHHHH
Confidence 3446677899999999999999999999999998864 7788888999888887765 3332 45555 4444444
No 34
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=21.19 E-value=1.8e+02 Score=25.41 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=46.1
Q ss_pred cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhccC---ceeEecccccchhhHHH-HH
Q 035901 28 SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGNYK---EAKIGFGAGSNIKTSIL-QA 103 (415)
Q Consensus 28 ~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~aG---eA~iGfGaG~g~~rAI~-qa 103 (415)
...+.+||+.|-+.+......=.---....++.+=-+=+|.-+-+.....+.++..+ --+..||.|.+.+...+ +-
T Consensus 78 gT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~i 157 (176)
T cd01464 78 GTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQI 157 (176)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHH
Confidence 466777777776665432210000000000112222345655444444434454443 46667777777887777 66
Q ss_pred hhhCCcccccccc
Q 035901 104 IYDCPFIGAGVKE 116 (415)
Q Consensus 104 a~~sPlLe~gI~g 116 (415)
+-..|++-.+++.
T Consensus 158 a~~~~~~~~~~~~ 170 (176)
T cd01464 158 TEGVPLLDDALSG 170 (176)
T ss_pred HCCCccccchhHH
Confidence 7777888777654
No 35
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=20.60 E-value=2.7e+02 Score=24.84 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=44.0
Q ss_pred ecccccchhhHHHHHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcc--cCCeEEeeecCCCCCCC
Q 035901 89 GFGAGSNIKTSILQAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEY--TGETIVSFVHEPNLEPD 166 (415)
Q Consensus 89 GfGaG~g~~rAI~qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~--~~DIIfg~~~dp~lede 166 (415)
||+...+....+.+.+..|-. .+..|++.++++ +-... ++..| ..+++.+++..|. ...+|+-+++-+.++++
T Consensus 58 G~~d~~~~~~~~~~~i~~~~~--~~~~g~~~illV-i~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 58 GLFDTSVSPEQLSKEIVRCLS--LSAPGPHAFLLV-VPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCccCChHHHHHHHHHHHH--hcCCCCEEEEEE-EECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 566554433334433333322 234788874444 44444 77665 5678899999883 46778888888887664
No 36
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=20.45 E-value=1.1e+02 Score=24.30 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHHhhcccCCeEEeeecCCCCCCCeEEEE
Q 035901 133 NNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTT 171 (415)
Q Consensus 133 l~D~~s~l~~~R~atg~~~DIIfg~~~dp~ledel~VT~ 171 (415)
..|+--+++..-++. .+.++|||.+-|+. ++++.+|+
T Consensus 13 ~~dlYKvVDfLNktL-K~~~lmFGLs~d~~-~~k~vitI 49 (52)
T PF14084_consen 13 NDDLYKVVDFLNKTL-KDKNLMFGLSKDEK-EEKMVITI 49 (52)
T ss_pred CccHHHHHHHHhhhh-hhccEEEEEeecCc-CCEEEEEE
Confidence 345566666666555 46799999999988 88887775
Done!