Query 035901
Match_columns 415
No_of_seqs 27 out of 29
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 12:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxd_A Cell division protein F 100.0 1.4E-34 4.8E-39 287.6 17.6 165 4-179 156-324 (396)
2 1ofu_A FTSZ, cell division pro 100.0 2E-29 7E-34 242.1 15.8 160 4-174 150-314 (320)
3 2vxy_A FTSZ, cell division pro 100.0 6.8E-29 2.3E-33 244.9 15.0 163 4-177 150-316 (382)
4 2vaw_A FTSZ, cell division pro 100.0 1.7E-28 5.7E-33 243.0 16.6 162 4-176 150-316 (394)
5 1w5f_A Cell division protein F 100.0 1.3E-28 4.5E-33 240.2 15.3 162 4-176 160-328 (353)
6 2vap_A FTSZ, cell division pro 100.0 4.8E-28 1.6E-32 237.4 17.3 165 4-179 176-343 (364)
7 1rq2_A Cell division protein F 100.0 2.9E-28 1E-32 240.4 15.4 164 4-178 150-317 (382)
8 2r75_1 Cell division protein F 99.9 4.8E-27 1.6E-31 227.4 16.4 165 4-179 146-315 (338)
9 4ei7_A Plasmid replication pro 99.9 7.1E-22 2.4E-26 194.6 11.1 169 3-179 165-363 (389)
10 3v3t_A Cell division GTPase FT 99.7 2.1E-17 7.3E-22 163.1 10.9 137 5-179 146-290 (360)
11 3m89_A FTSZ/tubulin-related pr 99.6 1.3E-15 4.3E-20 153.3 11.2 155 11-179 224-400 (427)
12 2btq_B Tubulin btubb; structur 98.5 1.5E-07 5E-12 93.8 6.5 178 5-199 190-389 (426)
13 2bto_A Tubulin btuba; bacteria 98.3 3.2E-06 1.1E-10 85.5 11.7 178 5-199 193-394 (473)
14 3cb2_A Gamma-1-tubulin, tubuli 98.1 6E-07 2E-11 91.1 1.4 178 5-199 192-399 (475)
15 3ryc_A Tubulin alpha chain; al 95.7 0.0042 1.4E-07 63.1 2.6 178 5-199 191-399 (451)
16 3ryc_B Tubulin beta chain; alp 95.6 0.0053 1.8E-07 62.2 2.8 178 5-199 189-389 (445)
17 2rf4_B DNA-directed RNA polyme 27.3 62 0.0021 26.9 4.0 36 117-152 16-52 (87)
18 3h4p_a Proteasome subunit beta 26.1 26 0.00088 31.1 1.7 58 28-87 149-206 (219)
19 1j2q_H Proteasome beta subunit 23.8 33 0.0011 29.6 1.9 54 28-83 147-200 (202)
20 3onh_A Ubiquitin-activating en 21.6 32 0.0011 30.1 1.3 37 129-168 18-60 (127)
21 1yar_H Proteasome beta subunit 21.6 42 0.0014 29.6 2.1 54 28-84 153-208 (217)
No 1
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*
Probab=100.00 E-value=1.4e-34 Score=287.56 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=159.1
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
-+.+|++++|.+||||||+|++. + ..++.+||+.||++|..+|++|+++|.-+ |++|+||+||+++|.
T Consensus 156 gl~~L~e~vD~vIvIdNeaL~~I~~~~l~i~~af~~aN~ll~q~VsgIT~~irfp----------G~iNvDfaDv~t~m~ 225 (396)
T 4dxd_A 156 GVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVS----------GEVNLDFADVKTIMS 225 (396)
T ss_dssp HHHHHHHHSSEEEEEEGGGGGGTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC----------CTBCCCHHHHHHHHT
T ss_pred HHHHHHhhCCEEEEEcCHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhhhccC----------CcccCCHHHHHHHhh
Confidence 47889999999999999999999 5 79999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeec
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVH 159 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~ 159 (415)
++|.|+||+|.+.|++||.+ +.|++||||+..|+||++ ||+||+|+.++++.|++++.+.|++.++++++||||.++
T Consensus 226 ~~G~A~mG~G~a~G~~ra~~A~~~Ai~sPLL~~~i~gAkg-vLvnItgg~dl~l~Ev~~~~~~i~~~~~~~a~ii~G~~~ 304 (396)
T 4dxd_A 226 NQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQG-VLMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVI 304 (396)
T ss_dssp TCEECEEEEEEEESTTHHHHHHHHHHCCSSCSSCSTTCCE-EEEEEEECTTCCHHHHHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred cCCeEEEEEEeccCCchHHHHHHHHHhCccccCChhhhcc-eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCCeEEEeeee
Confidence 99999999999999999999 999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEEecCcc
Q 035901 160 EPNLEPDLLVTTVVTLGLVE 179 (415)
Q Consensus 160 dp~ledel~VT~Iatl~~~~ 179 (415)
||+++++|+||+|||=-...
T Consensus 305 d~~l~~~i~VtviaTG~~~~ 324 (396)
T 4dxd_A 305 NPELQDEIVVTVIATGFDDK 324 (396)
T ss_dssp CTTSTTEEEEEEEEECCCCC
T ss_pred CCCCCCcEEEEEEEecCCCC
Confidence 99999999999999865544
No 2
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=99.96 E-value=2e-29 Score=242.12 Aligned_cols=160 Identities=17% Similarity=0.246 Sum_probs=154.6
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
-+++|++++|.+||||||+|++. + ..++.+||+.||++|..+|+||+++|.-+ |++|+||+||+++|.
T Consensus 150 ~l~~L~e~~D~~ividNe~L~~i~~~~l~i~~af~~~n~~l~~~v~~it~~ir~p----------G~iNvD~~dv~t~l~ 219 (320)
T 1ofu_A 150 GIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRP----------GMINVDFADVKTVMS 219 (320)
T ss_dssp HHHHHHTTCSEEEEEEHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSC----------SSSSCCHHHHHHHHT
T ss_pred HHHHHHHhCCEEEEEecHHhhhhhhcCCCHHHHHHHHHHHHHHHhcccHhhcccC----------CceeecHHHHHHhcc
Confidence 47889999999999999999999 5 89999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCccc-cccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeee
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIG-AGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFV 158 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe-~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~ 158 (415)
..|.++||+|.++|++|+.+ +.|++||||+ ..+++|++ ++|||+++.++++.|++++.+.||+.++.+.+||||..
T Consensus 220 ~~g~~~~g~g~a~g~~~~~~a~~~a~~~~ll~~~d~~~ak~-~l~~i~~~~d~~~~ev~~a~~~i~~~~~~~~~ii~G~~ 298 (320)
T 1ofu_A 220 EMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARG-ILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTV 298 (320)
T ss_dssp TCEEEEEEEEEEESTTHHHHHHHHHHTCGGGTTCCGGGCSE-EEEEEEECTTCCHHHHHHHHHHHHHHSCTTSEEEEEEE
T ss_pred CCCeeEEEEEecCcccHHHHHHHHHHhccccccCCccccce-EEEEEEeCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999999999999988 8899999998 67999999 89999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEEEE
Q 035901 159 HEPNLEPDLLVTTVVT 174 (415)
Q Consensus 159 ~dp~ledel~VT~Iat 174 (415)
+||.++++++||+|||
T Consensus 299 ~~~~~~~~v~vtviat 314 (320)
T 1ofu_A 299 IDADMRDELHVTVVAT 314 (320)
T ss_dssp ECTTCCSEEEEEEEEE
T ss_pred cCCCCCCeEEEEEEEe
Confidence 9999999999999998
No 3
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=99.96 E-value=6.8e-29 Score=244.90 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=156.3
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
-+++|++++|.+||||||+|++. + ..++.+||+.||++|..+|+||+++|.-+ |++|+||+||+++|.
T Consensus 150 ~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~af~~~N~ll~~~vsgIt~~ir~p----------G~iNvD~~dv~t~L~ 219 (382)
T 2vxy_A 150 GISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATP----------GLINLDFADVKTIMS 219 (382)
T ss_dssp HHHHHHHHCSEEEEEEHHHHHHHSCTTCCHHHHHHHHHHHHHHHHHHHHTTTSSC----------CTTCCCHHHHHHHTT
T ss_pred HHHHHHHhCCEEEEEccHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC----------CccccCHHHHHHhcc
Confidence 47899999999999999999998 5 79999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeec
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVH 159 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~ 159 (415)
..|.++||+|.++|++|+.+ +.|++||||+..+++|++ ++|||+|+.++++.|++++...|++..+.+.+|+||..+
T Consensus 220 ~~g~a~~g~g~a~g~~r~~ea~~~a~~s~ll~~d~~~ak~-~l~~i~gg~dl~~~ev~~a~~~I~~~~~~~a~ii~G~~~ 298 (382)
T 2vxy_A 220 NKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQG-VLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVI 298 (382)
T ss_dssp CSSEEEEEEEEEESTTHHHHHHHHHHTCTTSCSCGGGCSE-EEEEEEECTTCCHHHHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCCceEEEEEecccccHHHHHHHHHHhCcCcCCChhhcce-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCCCCEEEEeec
Confidence 99999999999999999988 889999999988999999 899999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEEecC
Q 035901 160 EPNLEPDLLVTTVVTLGL 177 (415)
Q Consensus 160 dp~ledel~VT~Iatl~~ 177 (415)
||.++++++||+|+|=-.
T Consensus 299 d~~~~~~v~VtvIatG~~ 316 (382)
T 2vxy_A 299 NENLKDEIVVTVIATGFI 316 (382)
T ss_dssp CTTCSSEEEEEEEEEEEC
T ss_pred CCCCCCeEEEEEEEcCCC
Confidence 999999999999998543
No 4
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=99.96 E-value=1.7e-28 Score=242.96 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=155.3
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
-+++|++++|.+||||||+|++. + ..++.+||+.||++|..+|++|+++|.-+ |++|+||+||+++|.
T Consensus 150 ~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~af~~~N~li~~~v~~it~~ir~p----------G~iNvD~~dv~t~L~ 219 (394)
T 2vaw_A 150 GIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRP----------GMINVDFADVKTVMS 219 (394)
T ss_dssp HHHHHHTTCSEEEEEEHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSB----------CSSCCCHHHHHHHHT
T ss_pred HHHHHHHhCCEEEEEecHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcCC----------CcccccHHHHHHhcc
Confidence 47899999999999999999998 5 89999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCcccc-ccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeee
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGA-GVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFV 158 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~-gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~ 158 (415)
..|.++||+|.+.|++|+.+ +.|++||||+. .+++|++ ++|||+++.++++.|++++++.|++.++.+.+|+||..
T Consensus 220 ~~g~a~~g~g~a~g~~rv~ea~~~A~~spLl~~~d~~~ak~-~lv~i~~~~dl~~~ev~~a~~~I~~~~~~~a~i~~G~~ 298 (394)
T 2vaw_A 220 EMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARG-ILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTV 298 (394)
T ss_dssp TTCCBEEEEEEECSTTHHHHHHHHHHTCGGGTTCCTTTCSE-EEEEEEECTTCCHHHHHHHHHHHHHHSCTTSEEEEEEE
T ss_pred CCCceeEEEEeccccchHHHHHHHHHhcCccCCCCccccce-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCCCCEEEEee
Confidence 99999999999999999998 88999999996 6999999 89999999999999999999999999998999999999
Q ss_pred cCCCCCCCeEEEEEEEec
Q 035901 159 HEPNLEPDLLVTTVVTLG 176 (415)
Q Consensus 159 ~dp~ledel~VT~Iatl~ 176 (415)
++|.++++++||+|+|=-
T Consensus 299 ~d~~~~~~v~VtvIatG~ 316 (394)
T 2vaw_A 299 IDADMRDELHVTVVATGL 316 (394)
T ss_dssp ECSSCCSCEEEEEEEECC
T ss_pred cCCCCCCeEEEEEEEccC
Confidence 999999999999999843
No 5
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=99.96 E-value=1.3e-28 Score=240.16 Aligned_cols=162 Identities=17% Similarity=0.277 Sum_probs=155.6
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCcccc--ChHHHHHH
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKEL--KVSEIFKI 79 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinl--dfaDVr~i 79 (415)
-+++|++++|.+||||||+|++. + ..++.+||+.||++|..+|++|+++|.-+ |++|+ ||+||+++
T Consensus 160 ~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~af~~~N~ll~~~v~~it~~ir~p----------G~iNv~~D~~dv~t~ 229 (353)
T 1w5f_A 160 GLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKR----------GYIRLTSRFARIESV 229 (353)
T ss_dssp HHHHHHHTCSEEEEEEHHHHHTTSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEecHHHHhhhcccCCHHHHHHHHHHHHHHHhcCchhhccCC----------cccccccCHHHHHHh
Confidence 47899999999999999999999 5 89999999999999999999999999999 99999 99999999
Q ss_pred hhccCceeEecccccchhhHHH--HHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEee
Q 035901 80 LGNYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSF 157 (415)
Q Consensus 80 L~~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~ 157 (415)
|...|.++||+|.++|++|+.+ +.|++||||+..+++|++ ++|||+++.++++.|++++.+.|++.++.+.+|+||.
T Consensus 230 L~~~g~a~~g~g~a~g~~~v~ea~~~a~~~~ll~~d~~~ak~-~l~~i~~~~dl~~~ev~~a~~~I~~~~~~~~~i~~G~ 308 (353)
T 1w5f_A 230 MKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASS-IVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGL 308 (353)
T ss_dssp HTTCEEEEEEEEEEESTTHHHHHHHHHHTCTTCCSCGGGCSE-EEEEEEECTTCCHHHHHHHHHHHHTTSCTTSEEEEEE
T ss_pred ccCCCeeEEEEeecCCcchHHHHHHHHHhCCCcCCChhhcce-eEEEEEeCCCCCHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 9999999999999999999988 888899999988999999 9999999999999999999999999999999999999
Q ss_pred ecCCCCCC-CeEEEEEEEec
Q 035901 158 VHEPNLEP-DLLVTTVVTLG 176 (415)
Q Consensus 158 ~~dp~led-el~VT~Iatl~ 176 (415)
.+||.+++ +++||+|+|=-
T Consensus 309 ~~d~~~~~~~v~vtviatg~ 328 (353)
T 1w5f_A 309 IFDDEVPDDEIRVIFIATRF 328 (353)
T ss_dssp EECTTSCTTEEEEEEEEECC
T ss_pred EeCCCCCCCeEEEEEEEeCC
Confidence 99999999 99999999843
No 6
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*
Probab=99.95 E-value=4.8e-28 Score=237.44 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=157.3
Q ss_pred HHHHHHhccceEEEecCcccccc-ccccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhc
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-DSVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGN 82 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~ 82 (415)
-+++|++++|.+|+||||+|++. +..++.+||+.||++|..+|++|+++|.-+ |++|+||+||+++|..
T Consensus 176 ~l~~L~e~~D~~ividNeaL~~i~~~l~i~~af~~~N~li~~~v~~it~~ir~p----------G~iNvD~~dv~t~L~~ 245 (364)
T 2vap_A 176 GLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELITKD----------GLINVDFADVKAVMNN 245 (364)
T ss_dssp HHHHHHTTCSEEEEEEGGGHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC----------CSBCCCHHHHHHHHTT
T ss_pred HHHHHHHhCCeEEEEcHHHHHHHHccCChhhhhhhHHHHHHHHHhhhhHHhhcC----------CceeccHHHHHHhccC
Confidence 47899999999999999999998 678889999999999999999999999999 9999999999999999
Q ss_pred cCceeEecccccchhhHHH--HHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeecC
Q 035901 83 YKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHE 160 (415)
Q Consensus 83 aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~d 160 (415)
.|.++||+|.+.|++|+.+ +.|+++|||+..+++|++ ++|||+++.++++.|++++.+.|++.++++.+|+||.+++
T Consensus 246 ~g~a~~g~g~a~g~~r~~ea~~~a~~~~ll~~d~~~ak~-~l~~i~~~~dl~~~ev~~a~~~I~~~~~~~a~ii~G~~~~ 324 (364)
T 2vap_A 246 GGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATG-ALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATID 324 (364)
T ss_dssp CEEEEEEEEEECSTTHHHHHHHHHHTCTTCCSCGGGCCE-EEEEEEECTTCCHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CCeeEEEEEecCCcchHHHHHHHHHhCcCcCcChhhcce-EEEEEEeCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEEec
Confidence 9999999999999999988 888899999988999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEecCcc
Q 035901 161 PNLEPDLLVTTVVTLGLVE 179 (415)
Q Consensus 161 p~ledel~VT~Iatl~~~~ 179 (415)
|.++++++||+|||=-.++
T Consensus 325 ~~~~~~v~VtvIatG~~~~ 343 (364)
T 2vap_A 325 ENLENTVRVLLVITGVQSR 343 (364)
T ss_dssp TTCSSCEEEEEEEECCGGG
T ss_pred CCCCCeEEEEEEEeCCCCC
Confidence 9999999999999855443
No 7
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=99.95 E-value=2.9e-28 Score=240.38 Aligned_cols=164 Identities=20% Similarity=0.289 Sum_probs=155.8
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
-+++|++++|.+|+||||+|++. + ..++.+||+.||++|..+|++|+++|.-+ |++|+||+||+++|.
T Consensus 150 ~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~af~~~N~li~~~vs~it~~ir~p----------G~iNvD~~dv~t~L~ 219 (382)
T 1rq2_A 150 GIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTP----------GLINVDFADVKGIMS 219 (382)
T ss_dssp HHHHHHHHCSEEEEEEHHHHTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSB----------CSSCCCHHHHHHHHT
T ss_pred HHHHHHHhCCEEEEEechhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHccC----------CceeccHHHHHHhcc
Confidence 47889999999999999999998 5 78999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeeec
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVH 159 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~~ 159 (415)
..|.++||+|.++|++|+.+ +.|++||||+..+++|++ ++|||+|+.++++.|++++...|++.++.+.+||||..+
T Consensus 220 ~~g~a~~g~g~a~g~~r~~ea~~~a~~s~ll~~d~~~ak~-~l~~i~gg~dl~~~ev~~a~~~I~~~~~~~a~ii~G~~~ 298 (382)
T 1rq2_A 220 GAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQG-VLMSIAGGSDLGLFEINEAASLVQDAAHPDANIIFGTVI 298 (382)
T ss_dssp TCEEEEEEEEEEESTTHHHHHHHHHHTCGGGTTCGGGCSE-EEEEEEECTTCCHHHHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCCeeEEEeeecccccHHHHHHHHHHhCcCcCCChhchhe-EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 99999999999999999988 888999999988999999 899999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEEecCc
Q 035901 160 EPNLEPDLLVTTVVTLGLV 178 (415)
Q Consensus 160 dp~ledel~VT~Iatl~~~ 178 (415)
||.++++++||+|+|=-..
T Consensus 299 d~~~~~~v~VtvIatG~~~ 317 (382)
T 1rq2_A 299 DDSLGDEVRVTVIAAGFDV 317 (382)
T ss_dssp CGGGTTEEEEEEEEECC--
T ss_pred CCCCCCeEEEEEEEccCCc
Confidence 9999999999999995433
No 8
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Probab=99.95 E-value=4.8e-27 Score=227.39 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=157.0
Q ss_pred HHHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 4 LAAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 4 lI~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
-+++|++++|.+|+||||+|++. + ..++.+||+.||++|..+|++|+++|.-+ |.+|+||+||+++|.
T Consensus 146 ~l~~L~e~~D~~ividNe~L~~i~~~~l~i~~af~~~N~~i~~~v~~it~~ir~p----------G~iNvD~~dv~t~L~ 215 (338)
T 2r75_1 146 GLEKLKESSDAYIVIHNDKIKELSNRTLTIKDAFKEVDSVLSKAVRGITSIVVTP----------AVINVDFADVRTTLE 215 (338)
T ss_dssp HHHHHHHTCSEEEEEEHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSC----------CSBCCCHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEeccHHHHhhhhccCChHHHHHHHHHHHHHHHhhhhhhhccC----------CceeCCHHHhhhhee
Confidence 47899999999999999999999 5 78999999999999999999999999999 999999999999999
Q ss_pred ccCceeEecccccchhhHHH--HHhhhCCcccc-ccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEeee
Q 035901 82 NYKEAKIGFGAGSNIKTSIL--QAIYDCPFIGA-GVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFV 158 (415)
Q Consensus 82 ~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe~-gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg~~ 158 (415)
.+|.|.||+|.+.|++|+.+ ++++.+|||+. .+.+|++ +++|++|+.++++.|++++...|++..+++.+|+||.+
T Consensus 216 ~~g~a~~g~g~a~g~~r~~~a~~~ai~s~lle~n~~~~a~~-~l~~i~G~~dl~~~ev~~a~~~I~~~~~~~~~i~~G~~ 294 (338)
T 2r75_1 216 EGGLSIIGMGEGRGDEKADIAVEKAVTSPLLEGNTIEGARR-LLVTIWTSEDIPYDIVDEVMERIHSKVHPEAEIIFGAV 294 (338)
T ss_dssp TCEEEEEEEEEEESTTHHHHHHHHHHHCBSSBSSCGGGCSE-EEEEEEECTTSCTTHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCccceeeeccCCccchHHHHHHHHHHhhhhcccchhhhhe-EEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 99999999999999999988 78999999996 6999999 99999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEEEEecCcc
Q 035901 159 HEPNLEPDLLVTTVVTLGLVE 179 (415)
Q Consensus 159 ~dp~ledel~VT~Iatl~~~~ 179 (415)
++|.++++++||+|+|--...
T Consensus 295 ~~~~~~~~~~vtviatg~~~~ 315 (338)
T 2r75_1 295 LEPQEQDFIRVAIVATDFPEE 315 (338)
T ss_dssp ECTTCCSEEEEEEEEECCSSC
T ss_pred eCCCCCCeEEEEEEECCCCCC
Confidence 999999999999999965544
No 9
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=99.86 E-value=7.1e-22 Score=194.64 Aligned_cols=169 Identities=14% Similarity=0.068 Sum_probs=142.4
Q ss_pred HHHHHH---HhccceEEEecCcccccc-c----cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChH
Q 035901 3 DLAAKL---QDHINFYIDIDTDRLLEK-D----SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVS 74 (415)
Q Consensus 3 ~lI~kL---qe~vd~lIVI~nDrLLe~-D----~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfa 74 (415)
+-|+.| .++||++||||||+|++. + ..++.+||+.||++|..+|++|++++..+ .-.|++|+||+
T Consensus 165 ~~i~~l~~~~~~vd~~ividN~~l~~~~~~~~~~~~~~~af~~an~~l~~~v~~i~~~~~~~-------~~~g~in~D~a 237 (389)
T 4ei7_A 165 SRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEINLVTSSF-------TPFSDTHFDAS 237 (389)
T ss_dssp HHHHHHHHTGGGSSEEEEEEHHHHHHHHHHHCTTCCGGGHHHHHHHHHHHHHHHHHHHTTSS-------EESSSCCCCHH
T ss_pred HHHHHHHHHhccCCeEEEeccHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCeEEeeHH
Confidence 346667 467999999999999997 3 47899999999999999999999999765 12389999999
Q ss_pred HHHHHhhccCceeEeccc-------ccchhhHHH--HHhhhCCcccc----ccccCCceEEEEeccCcc-----cCchhh
Q 035901 75 EIFKILGNYKEAKIGFGA-------GSNIKTSIL--QAIYDCPFIGA----GVKELNGMVICVVATSNI-----IGNNDL 136 (415)
Q Consensus 75 DVr~iL~~aGeA~iGfGa-------G~g~~rAI~--qaa~~sPlLe~----gI~gan~~vlinItgs~d-----l~l~D~ 136 (415)
||+++|++.|.|.||+|. +.|++++.+ +.++.+|+|.. .|++|.+ +++||+++.+ ++..++
T Consensus 238 Dv~~vm~~~G~a~~G~~~~~~~~~~~~~~~~~~~a~~~ai~~~ll~~~~~~~i~~A~~-~ll~I~~~~~~~~~~~~~~~~ 316 (389)
T 4ei7_A 238 EFAQVINTPGVLSLAKLELKSNQLDTENPLGYLTQLGNALEKGVLYDTEREELESAKK-SALSIVTSPLRAGRLYNFSFL 316 (389)
T ss_dssp HHHHHHTSSEEEEEEEEEEEGGGCCTTSTHHHHHHHHHHHHBCSSSBCCHHHHTTCSE-EEEEEEECHHHHHHHSSHHHH
T ss_pred HHHHHhcCCCEEEEEeeeccccccccccchHHHHHHHHHHhccccccccccChhhhhe-EEEEEEcCcccchhhhhHHHH
Confidence 999999999999999995 566678877 88899999964 5999999 9999999987 556667
Q ss_pred HHHHHHHHHhhcc----cCCeEEeeecCCCCCCCeEEEEEEEecCcc
Q 035901 137 QSFLHTFRQITEY----TGETIVSFVHEPNLEPDLLVTTVVTLGLVE 179 (415)
Q Consensus 137 ~s~l~~~R~atg~----~~DIIfg~~~dp~ledel~VT~Iatl~~~~ 179 (415)
..+-+.+++.+.. ...|++|...++.++++++||+||+=-+.+
T Consensus 317 ~~~~~~i~~~~~~~~~~~~~i~~g~~~~~~~~~~V~v~viatG~~~~ 363 (389)
T 4ei7_A 317 NQMENFLKERTPYVDERPIAPYVNKHTTKKEEDIVKFYSVVAGLPLP 363 (389)
T ss_dssp HHHHHHHHHHSTTCSCCCEEEEECTTCCGGGTTEEEEEEEEEEECCC
T ss_pred HHHHHHHHhhccccCcccceEEecCCCCcCCCCeEEEEEEEecCCch
Confidence 7777777777752 345788999999999999999999866543
No 10
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C}
Probab=99.71 E-value=2.1e-17 Score=163.05 Aligned_cols=137 Identities=11% Similarity=-0.048 Sum_probs=118.8
Q ss_pred HHHHHh---ccceE--EEecCccccccccccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHH
Q 035901 5 AAKLQD---HINFY--IDIDTDRLLEKDSVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKI 79 (415)
Q Consensus 5 I~kLqe---~vd~l--IVI~nDrLLe~D~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~i 79 (415)
+..|++ ++|.+ |+||||+ ..+|..+|+++..+|++|+.++..+ |.+||||+|||++
T Consensus 146 l~~L~e~sD~vD~lcvividNea---------~~ay~~lN~lIaq~vs~lt~~l~~~----------G~iNVDfaDv~tv 206 (360)
T 3v3t_A 146 WNDIMRSTNEGKDISIYLLDNNK---------REKESDINKEFATLFNDFMNMSESH----------AEGVVDEDEISKL 206 (360)
T ss_dssp HHHHHHHTTTTTSSEEEEEEGGG---------SSSHHHHHHHHHHHHHHHHGGGSCC----------SSCCCCHHHHHHH
T ss_pred HHHHHhhhccCCceEEEEEeCCC---------chhHHHHHHHHHHHHHHHHHhhccC----------CceeeeHHHHHHH
Confidence 678999 78888 9999998 4689999999999999999999988 9999999999999
Q ss_pred hhccCceeEecccccchhhHHH--HHhhhCCccc-cccccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCCeEEe
Q 035901 80 LGNYKEAKIGFGAGSNIKTSIL--QAIYDCPFIG-AGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVS 156 (415)
Q Consensus 80 L~~aGeA~iGfGaG~g~~rAI~--qaa~~sPlLe-~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~DIIfg 156 (415)
|+..|.|+||. +.|++||.+ +.|++||||+ ..|+||++ ++||+|+ ..|++++...| ++..+ +||
T Consensus 207 m~~~G~a~mg~--~~g~~ra~~A~~~Ai~spLl~~~~i~ga~~-~linit~-----~~d~~ei~~~i----~~~~~-~fg 273 (360)
T 3v3t_A 207 LTMKKSNVILE--FDDKEDIQVALAKSLKESIFAEYTTNTCEF-MGISTTR-----VVDVEAIKSIV----GYPRR-TFK 273 (360)
T ss_dssp HHCCEEEEEEE--CCSSSCHHHHHHHHHHTCSBCCCCCCBCSE-EEEEESS-----CCCHHHHHHHH----CBCSE-EEE
T ss_pred HhCCCcEEEEE--ecCccHHHHHHHHHHhCcCCCCCCccCCcE-EEEEecC-----CCCHHHHHHHh----CCchh-eee
Confidence 99999999994 689999999 9999999998 56999999 9999986 57888888888 54555 788
Q ss_pred eecCCCCCCCeEEEEEEEecCcc
Q 035901 157 FVHEPNLEPDLLVTTVVTLGLVE 179 (415)
Q Consensus 157 ~~~dp~ledel~VT~Iatl~~~~ 179 (415)
+ + +.+.+ |+|||=...+
T Consensus 274 ~-y----~~~~~-~vv~tG~~~~ 290 (360)
T 3v3t_A 274 G-Y----NSKKN-IVVATGIEPQ 290 (360)
T ss_dssp E-E----CSSCC-EEEEEEECCC
T ss_pred e-e----CCccc-EEEEcCCCcc
Confidence 8 5 46667 7777655544
No 11
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Probab=99.62 E-value=1.3e-15 Score=153.30 Aligned_cols=155 Identities=13% Similarity=0.054 Sum_probs=124.1
Q ss_pred ccceEEEecCcccccc-ccc----cHHH---HHH-HhhHHHHHHhhHHHHHhhc--chhhhhhhhccCccccChHHHHHH
Q 035901 11 HINFYIDIDTDRLLEK-DSV----TLDE---ALK-TANNAVFLAVNAISTLSSD--MHRKLIDIVHSNVKELKVSEIFKI 79 (415)
Q Consensus 11 ~vd~lIVI~nDrLLe~-D~v----TL~E---Afk-~Annal~~gIkgISdlIs~--~h~~f~~~~~~glinldfaDVr~i 79 (415)
++|.+|+||||+|.+. +.. ++.+ ||+ .||++|..+|++|++++.. + |.+|+||+||+++
T Consensus 224 ~~D~vividNe~l~~i~~~~~~~~~~~~~~~af~~~aN~~Ia~~I~~I~~~i~~~~~----------G~iNvD~aDv~t~ 293 (427)
T 3m89_A 224 PLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPENYGS----------DNVTYDPSDLIKL 293 (427)
T ss_dssp SEEEEEEEEHHHHHHHHHHSSCSSSCCCSCSCHHHHHHHHHHHHHHHHHHHHHHCCC----------SSSCCCHHHHHHH
T ss_pred cccEEEEEehHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhccCCC----------CcEeecHHHHHHh
Confidence 9999999999998766 322 3455 999 8999999999999999974 7 9999999999999
Q ss_pred hh-ccCceeEecccccchh--hHHH--HHhh-hCCccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHHhhcccCC
Q 035901 80 LG-NYKEAKIGFGAGSNIK--TSIL--QAIY-DCPFIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGE 152 (415)
Q Consensus 80 L~-~aGeA~iGfGaG~g~~--rAI~--qaa~-~sPlLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg~~~D 152 (415)
|. ..|.|.||+|.+.+.. ++.. +.++ ++||+... +++|++ ++|+|+++.+++..+...+.+.+|++.++..|
T Consensus 294 L~~~~G~a~iG~a~~~~~d~~~~~~ai~~al~~~~Ll~~~d~~~Ak~-~lv~i~g~~~~~~~~~~~~~~~~~~~l~e~t~ 372 (427)
T 3m89_A 294 LSIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATM-YGGFVLRPSNADFFKDVNTENRIRNTLGEYKR 372 (427)
T ss_dssp HHSSCSEEEEEEEEECSCSHHHHHHHHHHHHHSSTTCSCCCGGGCCE-EEEEEEEESSCGGGGCHHHHHHHHHHHTTTSC
T ss_pred CCCCCCeEEEEEecccccchhhHHHHHHHHHhCCCcccccCcccccE-EEEEEEeCchhhhhhhHHHHHHHHHHHHhcCC
Confidence 99 8999999999987653 3333 4455 56665554 999999 99999999999999999999999999993333
Q ss_pred --eEEeeecCC--CCCCCeEEEEEEEecCcc
Q 035901 153 --TIVSFVHEP--NLEPDLLVTTVVTLGLVE 179 (415)
Q Consensus 153 --IIfg~~~dp--~ledel~VT~Iatl~~~~ 179 (415)
.|-|-..+| +-+ + |+..+-+++-+
T Consensus 373 ~~~v~g~~~~~~~~~~-~--~~~~~~~~g~~ 400 (427)
T 3m89_A 373 LDEIAGKFGDPIWDNE-Y--AVCYTIFAGMT 400 (427)
T ss_dssp GGGSEEEEECCEESSS-S--EEEEEEEEEEC
T ss_pred ceeccCCCCCcccCCc-c--eEEEEEecCCC
Confidence 346777777 444 3 55555555544
No 12
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}
Probab=98.47 E-value=1.5e-07 Score=93.81 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=115.7
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhc
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGN 82 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~ 82 (415)
+.+|++++|.+|+||||+|++. . ..+...+|+.+|++|..+|++|++.+.-+ |.+|+||+||++.|--
T Consensus 190 l~~L~e~~D~~i~idN~al~~i~~~~l~~~~~f~~~N~lia~~v~~it~~lr~~----------g~lN~D~~d~~t~lvP 259 (426)
T 2btq_B 190 LQRILDNADGAVLLDNEALFRIAKAKLNRSPNYMDLNNIIALIVSSVTASLRFP----------GKLNTDLSEFVTNLVP 259 (426)
T ss_dssp HHHHHHHCSEEEEEEHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHSS----------CSSSCSHHHHHHHHCS
T ss_pred HHHHHHhCCcceeeccHHHHHHHhccCCCCcHHHHHHHHHHhhhcchhhhccCC----------CcccCCHHHHHHHHhh
Confidence 6789999999999999999998 3 45577899999999999999999999999 9999999999999975
Q ss_pred cC---ceeEecccccc------hhhHHH---HHhhhC--CccccccccCCceEEEEeccCcccCchhhHHHHHHHHHhhc
Q 035901 83 YK---EAKIGFGAGSN------IKTSIL---QAIYDC--PFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITE 148 (415)
Q Consensus 83 aG---eA~iGfGaG~g------~~rAI~---qaa~~s--PlLe~gI~gan~~vlinItgs~dl~l~D~~s~l~~~R~atg 148 (415)
+. -...|+.-=.. ++..+. +.+++. -++....+..+-+-.|.+.-| ++...|+...+..||+..-
T Consensus 260 ~P~~hf~~~~~aP~~~~~~~~~~~~sv~~l~~~~f~~~n~m~~~dp~~g~yla~~~i~rG-~v~~~~v~~~~~~ik~~~~ 338 (426)
T 2btq_B 260 FPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTAAIDWQQGVYLAASALFRG-DVKAKDVDENMATIRKSLN 338 (426)
T ss_dssp STTCCEEEEECSCC-----------CCHHHHHHHTCGGGBSSCCCTTTCCEEEEEEEEEC-C----CTTTTHHHHHTTSC
T ss_pred CCCCceeeccccccccchhhccccCCHHHHhhhhcCccceeEecCCCCchHHHHHHHHcC-CCCHHHHHHHHHHHhcCCC
Confidence 43 33445443111 222222 444331 122212233344434555544 7888899888888876654
Q ss_pred c----c--CCeEEeeecCCCCCCCeEEEEEEEecCccccccchhhhhhhhhhhhHHH
Q 035901 149 Y----T--GETIVSFVHEPNLEPDLLVTTVVTLGLVEQASRKSSIFSRLAHHFPFVF 199 (415)
Q Consensus 149 ~----~--~DIIfg~~~dp~ledel~VT~Iatl~~~~~~s~k~~~lS~La~HFPfi~ 199 (415)
+ . ..+=+|+..-|-.+-++-|+. |+|++ .=...|+++.+-|--.+
T Consensus 339 fv~W~p~~~~~k~~i~~~~p~~~~~s~~~---lsNst---aI~~~~~~~~~~f~~m~ 389 (426)
T 2btq_B 339 YASYMPASGGLKLGYAETAPEGFASSGLA---LVNHT---GIAAVFERLIAQFDIMF 389 (426)
T ss_dssp BCTTSCSSCSEEEEEESCCCTTCSSBCCE---EEEEG---GGHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCceeeeeeccCCCCCcceeEE---ecCCh---HHHHHHHHHHHHHHHHh
Confidence 2 1 466788887776666665554 44443 12236778877776433
No 13
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*
Probab=98.30 E-value=3.2e-06 Score=85.53 Aligned_cols=178 Identities=14% Similarity=0.215 Sum_probs=110.2
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHH-HHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccC--hHHHHHH
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLD-EALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELK--VSEIFKI 79 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~-EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinld--faDVr~i 79 (415)
+..|.+++|.+|+||||+|++. . ..++. .+|+.+|++|..+|++|+..+.-+ |.+|+| |+||++.
T Consensus 193 l~~L~e~~D~~i~idNeaL~~i~~~~l~i~~~~f~~~N~lia~~v~~it~~lr~~----------g~lN~D~~l~d~~t~ 262 (473)
T 2bto_A 193 LNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRFS----------GFLTVEISLRELLTN 262 (473)
T ss_dssp HHHHHHTCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHH
T ss_pred HHHHHhhCCeEEEeccHHHHHHhccccccCcchHHHHHHHHhhhcccchhhcccC----------CcccCCccHHhhhhh
Confidence 6789999999999999999998 4 66774 899999999999999999999999 999999 9999999
Q ss_pred hhccCc---eeEeccc------ccchhhHHH---HHhhh-CC-ccccccccCCceEEEEeccCcccCchhh-HHHHHHHH
Q 035901 80 LGNYKE---AKIGFGA------GSNIKTSIL---QAIYD-CP-FIGAGVKELNGMVICVVATSNIIGNNDL-QSFLHTFR 144 (415)
Q Consensus 80 L~~aGe---A~iGfGa------G~g~~rAI~---qaa~~-sP-lLe~gI~gan~~vlinItgs~dl~l~D~-~s~l~~~R 144 (415)
|--+.. ...|+.- .+-++..+. +..++ .. ++.......+-+..|.+.-| +++..|+ ...+..|+
T Consensus 263 LvP~Prlhf~~~~~aPl~s~~~~~~~~~sv~~l~~~~f~~~n~m~~~dp~~gkyla~~~i~RG-~v~~~dv~~~~i~~ik 341 (473)
T 2bto_A 263 LVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEGRFLSTAVLYRG-IMEDKPLADAALAAMR 341 (473)
T ss_dssp HCSSTTCCEEEEEEECCCCCC-----CCCHHHHHHHHTSGGGBSSSSCGGGSCEEEEEEEEEE-C----CCHHHHHHHHH
T ss_pred eeecCCcceeeeccccccccchhccccCCHHHHHhhhcccccceeecCCCCchHHHHHHhhcC-CCChHHhhHHHHHHHH
Confidence 954443 3445421 111233333 44433 11 22222444555444555545 4788899 88888888
Q ss_pred Hh--hcc--cCCeEEeeecCCCCCCCeEEEEEEEecCccccccchhhhhhhhhhhhHHH
Q 035901 145 QI--TEY--TGETIVSFVHEPNLEPDLLVTTVVTLGLVEQASRKSSIFSRLAHHFPFVF 199 (415)
Q Consensus 145 ~a--tg~--~~DIIfg~~~dp~ledel~VT~Iatl~~~~~~s~k~~~lS~La~HFPfi~ 199 (415)
+- .-+ ...+=+++..-|-.+.+.-++. |+|++ .=...|++|.+-|--.+
T Consensus 342 ~k~~~~FW~p~~~kv~i~~~pp~g~~~s~~~---lsNsT---aI~~~~~~l~~kf~~m~ 394 (473)
T 2bto_A 342 EKLPLTYWIPTAFKIGYVEQPGISHRKSMVL---LANNT---EIARVLDRICHNFDKLW 394 (473)
T ss_dssp TTSCBCSSSCCCEEEEEESSCCSSCSEEEEE---EEEET---THHHHHHHHHHHHHHHH
T ss_pred hhcccceecCCcceecccccCCcCcceeEEE---ecCCc---hHHHHHHHHHHHHHHHh
Confidence 54 222 3456678777777776665554 44443 12236777777665443
No 14
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*
Probab=98.10 E-value=6e-07 Score=91.05 Aligned_cols=178 Identities=12% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccHHH-HHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTLDE-ALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL~E-Afk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|.+|+||||+|++. + ..++.+ +|+.+|++|..+|+||+..+.-+ |.+|+||+||++.|-
T Consensus 192 l~~L~e~sD~~i~idNeaL~~i~~~~l~i~~p~f~~~N~lia~~vs~iT~~lr~p----------G~lN~Dl~d~~tnLv 261 (475)
T 3cb2_A 192 LKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYP----------GYMNNDLIGLIASLI 261 (475)
T ss_dssp HHHHHHSCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTTTTSSS----------SCTTCSHHHHHHHHC
T ss_pred HHHHHhhCCEEEEeccHHHHHHHhhcCCCCcchHHHHHHHHhhhccccccccccC----------Ccccchhhhhcceee
Confidence 6789999999999999999998 4 677765 99999999999999999999999 999999999999996
Q ss_pred ccCce---eEecc------c-ccchhhHHH---HHhhhCC-ccccc-cc---cCCceEEEEeccCcccCchhhHHHHHHH
Q 035901 82 NYKEA---KIGFG------A-GSNIKTSIL---QAIYDCP-FIGAG-VK---ELNGMVICVVATSNIIGNNDLQSFLHTF 143 (415)
Q Consensus 82 ~aGeA---~iGfG------a-G~g~~rAI~---qaa~~sP-lLe~g-I~---gan~~vlinItgs~dl~l~D~~s~l~~~ 143 (415)
-+-.- ..+|- . .+-++..+. +.+++.- .+-++ -+ .-+-+-.|++--| ++...|+...+..|
T Consensus 262 P~PrlhFl~~s~aP~~s~~~~~~~~~~sv~~l~~~~f~~~n~m~~~dp~~~~~gkyla~~~~~RG-~v~~~dv~~~i~~i 340 (475)
T 3cb2_A 262 PTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQG-EVDPTQVHKSLQRI 340 (475)
T ss_dssp SSTTCCEEEEEEECCC------CCSCCCHHHHHHHTTSGGGBSSCCCCC--CCCCEEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred cccceeEeecccccccccccccccccCCHHHHHHHHhccccceEecCcccccccchhhhHHhhcC-CCCHHHHHHHHHHh
Confidence 65442 23332 1 222333332 4444310 11010 11 1122334444444 88999999999998
Q ss_pred HHh--hc----ccCCeEEeeecCCCC---CCCeEEEEEEEecCccccccchhhhhhhhhhhhHHH
Q 035901 144 RQI--TE----YTGETIVSFVHEPNL---EPDLLVTTVVTLGLVEQASRKSSIFSRLAHHFPFVF 199 (415)
Q Consensus 144 R~a--tg----~~~DIIfg~~~dp~l---edel~VT~Iatl~~~~~~s~k~~~lS~La~HFPfi~ 199 (415)
++- .- ....+=+|+..-|-. +.++-++ .|+|++- =...|+++.+-|--.+
T Consensus 341 k~k~~~~fv~W~p~~~k~~i~~~~p~~~~~~~~s~~---~lsN~Ta---I~~~f~ri~~kfd~m~ 399 (475)
T 3cb2_A 341 RERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL---MMANHTS---ISSLFERTCRQYDKLR 399 (475)
T ss_dssp HHTTCSCBCTTSCCCEEEEEECCCCC-----CCEEE---EEEEEGG---GHHHHHHHHHHHHHHH
T ss_pred hcccCCccceecCCCceeeeeccCCccCCCcceEEE---EecCChH---HHHHHHHHHHHHHHHh
Confidence 865 22 234566787766654 3445444 4455431 1236778877775443
No 15
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...
Probab=95.68 E-value=0.0042 Score=63.08 Aligned_cols=178 Identities=12% Similarity=0.147 Sum_probs=110.5
Q ss_pred HHHHHhccceEEEecCcccccc-c-cccH-HHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK-D-SVTL-DEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~-D-~vTL-~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|..|+||||.|.+. . ...+ .-+|...|+++...|++|+..+.-+ |..|+|+.|+.+-|-
T Consensus 191 l~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~slRf~----------G~lN~Dl~~l~tnLV 260 (451)
T 3ryc_A 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFD----------GALNVDLTEFQTNLV 260 (451)
T ss_dssp HHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHTT----------CSSSCSHHHHHHHHC
T ss_pred HHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhcccccccccccC----------cccccCHHHHhhccC
Confidence 4679999999999999999987 2 3444 3589999999999999999999999 999999999999875
Q ss_pred ccCce---eEe------cccccchhhHHH---HHhhhCC-ccccc-cccCCceEEEEeccCcccCchhhHHHHHHHHHh-
Q 035901 82 NYKEA---KIG------FGAGSNIKTSIL---QAIYDCP-FIGAG-VKELNGMVICVVATSNIIGNNDLQSFLHTFRQI- 146 (415)
Q Consensus 82 ~aGeA---~iG------fGaG~g~~rAI~---qaa~~sP-lLe~g-I~gan~~vlinItgs~dl~l~D~~s~l~~~R~a- 146 (415)
-+-.- +.| -+..+-++..+. +++++.= .+-++ -..-+-+-.|.+--| ++...|++..+..++.-
T Consensus 261 P~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG-~v~~~dv~~~i~~ik~k~ 339 (451)
T 3ryc_A 261 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIATIKTKR 339 (451)
T ss_dssp SSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEEEE-SCCHHHHHHHHHHHHHHC
T ss_pred CCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhccc-CCCHHHHHHHHHHHhhcC
Confidence 54321 122 222333444443 3333210 00000 111122334444433 67899999999988863
Q ss_pred -h---c-ccCCeEEeeecCCCC--------CCCeEEEEEEEecCccccccchhhhhhhhhhhhHHH
Q 035901 147 -T---E-YTGETIVSFVHEPNL--------EPDLLVTTVVTLGLVEQASRKSSIFSRLAHHFPFVF 199 (415)
Q Consensus 147 -t---g-~~~DIIfg~~~dp~l--------edel~VT~Iatl~~~~~~s~k~~~lS~La~HFPfi~ 199 (415)
. . ....+=+|+..-|-. +-+.-|+.| +|++ -=...|+||.+-|-..+
T Consensus 340 ~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~l---sNsT---aI~~~f~rl~~kFd~m~ 399 (451)
T 3ryc_A 340 SIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML---SNTT---AIAEAWARLDHKFDLMY 399 (451)
T ss_dssp CCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEE---EEEG---GGHHHHHHHHHHHHHHH
T ss_pred CcceEEEccCceeeeeeccCCccCCCccccccceeeEEe---cCch---HHHHHHHHHHHHHHHHh
Confidence 1 2 223355677666543 223444444 4443 12236778877775443
No 16
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...
Probab=95.55 E-value=0.0053 Score=62.23 Aligned_cols=178 Identities=12% Similarity=0.181 Sum_probs=114.9
Q ss_pred HHHHHhccceEEEecCcccccc--ccccH-HHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhh
Q 035901 5 AAKLQDHINFYIDIDTDRLLEK--DSVTL-DEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILG 81 (415)
Q Consensus 5 I~kLqe~vd~lIVI~nDrLLe~--D~vTL-~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~ 81 (415)
+..|.+++|..++||||.|.+. ....+ ..+|...|+++...|++|+..+.-+ |..|+|+.|+.+=|-
T Consensus 189 l~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~slRf~----------G~lN~Dl~~l~tnLV 258 (445)
T 3ryc_B 189 VHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP----------GQLNADLRKLAVNMV 258 (445)
T ss_dssp HHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHSC----------CSSSCSHHHHHHHHC
T ss_pred HhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhccccccC----------cccccCHHHHhhccc
Confidence 4678999999999999999998 34444 4789999999999999999999999 999999999998775
Q ss_pred ccCce---eEec------ccccchhhHHH---HHhhhCCccccccc--cCCceEEEEeccCcccCchhhHHHHHHHHHh-
Q 035901 82 NYKEA---KIGF------GAGSNIKTSIL---QAIYDCPFIGAGVK--ELNGMVICVVATSNIIGNNDLQSFLHTFRQI- 146 (415)
Q Consensus 82 ~aGeA---~iGf------GaG~g~~rAI~---qaa~~sPlLe~gI~--gan~~vlinItgs~dl~l~D~~s~l~~~R~a- 146 (415)
-+-.- +.|| +..+-++..+. ++.++.=-.-.+.. .-+-+-.|.+--| ++...|++..+..++.-
T Consensus 259 P~PrlhF~~~s~aP~~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG-~v~~kdv~~~i~~ik~k~ 337 (445)
T 3ryc_B 259 PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRG-RMSMKEVDEQMLNIQNKN 337 (445)
T ss_dssp SSTTCCEEEEEEESCCCTTCCCCCCCCHHHHHHHTTSGGGBSSSCCGGGSCEEEEEEEEEE-SCCHHHHHHHHHHHHHHT
T ss_pred CCCceeeeccccCcccccchhhhccCCHHHHHHHHHhhcCCeeecCCCCCcceeeeeeeec-CCChHHHHHHHHHHHhhC
Confidence 55432 1222 22222333332 44333100001110 1122333444433 57889999999988753
Q ss_pred ----hc-ccCCeEEeeecCCCCCCCeEEEEEEEecCccccccchhhhhhhhhhhhHHH
Q 035901 147 ----TE-YTGETIVSFVHEPNLEPDLLVTTVVTLGLVEQASRKSSIFSRLAHHFPFVF 199 (415)
Q Consensus 147 ----tg-~~~DIIfg~~~dp~ledel~VT~Iatl~~~~~~s~k~~~lS~La~HFPfi~ 199 (415)
+. ....+=+|+..-|-..-++-|+.| +|++ -=...|+||.+.|-..+
T Consensus 338 ~~~Fv~W~p~~~k~~i~~~pp~~~~~s~~~l---sNsT---aI~~~~~rl~~kFd~m~ 389 (445)
T 3ryc_B 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFI---GNST---AIQELFKRISEQFTAMF 389 (445)
T ss_dssp GGGBCTTSTTCEEEEEESSCCTTCSEEEEEE---EEEG---GGHHHHHHHHHHHHHHH
T ss_pred cccCcccCCCceeeeeeccCCcccceeeeee---cCcH---HHHHHHHHHHHHHHhhh
Confidence 22 344577888888777666655544 4443 12246788887776443
No 17
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=27.34 E-value=62 Score=26.86 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=31.4
Q ss_pred CCceEEEEecc-CcccCchhhHHHHHHHHHhhcccCC
Q 035901 117 LNGMVICVVAT-SNIIGNNDLQSFLHTFRQITEYTGE 152 (415)
Q Consensus 117 an~~vlinItg-s~dl~l~D~~s~l~~~R~atg~~~D 152 (415)
.|..+.+.+.| +..++.+|+..+|..|=++.+...+
T Consensus 16 lNtPvvi~v~~~~q~v~~~eae~~L~~FI~~~E~~~~ 52 (87)
T 2rf4_B 16 LNTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIID 52 (87)
T ss_dssp CCCCCEEEESSCCEECCHHHHHHHHHHHHHHHHSSSC
T ss_pred cCCCeEEEeecCCccCCHHHHHHHHHHHHHHHHhccc
Confidence 35668999999 9999999999999999999886544
No 18
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=26.10 E-value=26 Score=31.08 Aligned_cols=58 Identities=29% Similarity=0.252 Sum_probs=40.3
Q ss_pred cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhccCcee
Q 035901 28 SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGNYKEAK 87 (415)
Q Consensus 28 ~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~aGeA~ 87 (415)
..|++||++.|=++|..++.- |..++.+-.+.=.=.+|+..|+.+||..+|....+..
T Consensus 149 ~ms~eea~~la~~al~~~~~r--d~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~~~ 206 (219)
T 3h4p_a 149 DMSVEEGIKLALNALKSAMER--DTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKP 206 (219)
T ss_dssp TCCHHHHHHHHHHHHHHHHTS--CSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHHHHhh--cCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhccc
Confidence 689999999999999988763 4444442221111125899999999999999876543
No 19
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=23.81 E-value=33 Score=29.61 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=37.6
Q ss_pred cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhhccCccccChHHHHHHhhcc
Q 035901 28 SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGNY 83 (415)
Q Consensus 28 ~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~~~glinldfaDVr~iL~~a 83 (415)
..|++||++.|=+++..++. .|..++.+-...-.=.+|+..++..||..+|+..
T Consensus 147 ~~s~eea~~la~~al~~~~~--~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~ 200 (202)
T 1j2q_H 147 EIGVDEAVELAVRAIYSAMK--RDSASGDGIDVVKITEDEFYQYSPEEVEQILAKF 200 (202)
T ss_dssp TCCHHHHHHHHHHHHHHHHT--TCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGT
T ss_pred CcCHHHHHHHHHHHHHHHHh--cCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHHh
Confidence 57999999999999988866 3444444221111112589999999999998754
No 20
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=21.62 E-value=32 Score=30.09 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=27.7
Q ss_pred cccCchhhHHHHHHHHHhhcccCCeEEe------eecCCCCCCCeE
Q 035901 129 NIIGNNDLQSFLHTFRQITEYTGETIVS------FVHEPNLEPDLL 168 (415)
Q Consensus 129 ~dl~l~D~~s~l~~~R~atg~~~DIIfg------~~~dp~ledel~ 168 (415)
..+++.|.. +.+|+..||..||-+. +.+||+++|++-
T Consensus 18 ~~~TL~dLV---~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~ 60 (127)
T 3onh_A 18 NKMKLSDFV---VLIREKYSYPQDISLLDASNQRLLFDYDFEDLND 60 (127)
T ss_dssp HHCBHHHHH---HHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTT
T ss_pred cccCHHHHH---HHHHHhcCCCCcEEEEecCCCCeEeCCCcccccc
Confidence 445666655 4479999998888655 789999999864
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=21.55 E-value=42 Score=29.61 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=38.5
Q ss_pred cccHHHHHHHhhHHHHHHhhHHHHHhhcchhhhhhhh--ccCccccChHHHHHHhhccC
Q 035901 28 SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIV--HSNVKELKVSEIFKILGNYK 84 (415)
Q Consensus 28 ~vTL~EAfk~Annal~~gIkgISdlIs~~h~~f~~~~--~~glinldfaDVr~iL~~aG 84 (415)
..|++||++.|=++++.++. .|..++.+-. +..+ .+|+..++..||.++|....
T Consensus 153 ~~s~eea~~la~~al~~~~~--rd~~s~~~i~-v~vi~~~~g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 153 KMTVDEGVDLVIRAISAAKQ--RDSASGGMID-VAVITRKDGYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp TCCHHHHHHHHHHHHHHHHH--HCTTCCSCCE-EEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh--ccCCCCCcEE-EEEEECCCCEEEcCHHHHHHHHHHHH
Confidence 57999999999999988866 3444444211 1122 25899999999999997654
Done!