RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 035901
(415 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 2e-12
Identities = 73/475 (15%), Positives = 128/475 (26%), Gaps = 154/475 (32%)
Query: 3 DLAAKLQDHINFYIDIDTDRLLEKDSVTLDEALKTANNA---VFLAVNAISTLSSDMHRK 59
+L K +++ ++ D+ L +L N
Sbjct: 59 ELVGKFLGYVSSLVE-------PSKVGQFDQVLNLCLTEFENCYLEGN------------ 99
Query: 60 LIDIVHSNVKEL------KVSEIFKILGNYKEAKI--------------------G---- 89
DI H+ +L + + +++ NY A+I G
Sbjct: 100 --DI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 90 ---FGAG-SNIKTSI--LQAIYD------CPFIGAGVKELNGMVICVVATSNIIGNN-DL 136
FG G N L+ +Y I + L+ ++ + + ++
Sbjct: 157 VAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 137 QSFLHTFRQI--TEYTGETIVSF--------VH----------EP-NLEPDLLVTTVVTL 175
+L +Y +S H P L L T +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 176 GLV-----EQASRKSSIFSRLAHHF-PFVFNLLRRNHQQSNDTQGNSEFDNACVSEVIGP 229
GLV + S F +F + R ++ +T + G
Sbjct: 276 GLVTAVAIAETDSWES-FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 230 P---------DTSEIENKI--------SNESVSEGFYNYSNDA------PTLLTDYN--- 263
P ++++ + + + V N P L N
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTL 393
Query: 264 -NIDASSRSGQSEAEFYESRTEPSNLYDQIVEGTPFQRELLN---------------SWN 307
A S QS F E + + SN + + +PF LL S+N
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPV--ASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 308 ---LG-PGYQIAQQWAKERSADSRASTMIDNLGIFCLPV------GVRASEELDF 352
+ P Y + R S I + I LPV +A+ LDF
Sbjct: 452 AKDIQIPVYDTF-DGSDLRVLSGSISERIVDC-IIRLPVKWETTTQFKATHILDF 504
Score = 40.4 bits (94), Expect = 0.001
Identities = 51/303 (16%), Positives = 97/303 (32%), Gaps = 98/303 (32%)
Query: 55 DMHRK------LIDIVHSNVKELKVSEIFKILGNYKEAKIGFGA--GSNIKTSILQAIYD 106
D H K ++DIV +N L + FG G I+ + I++
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIH---------------FGGEKGKRIRENYSAMIFE 1694
Query: 107 CPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPD 166
G E F++I E++ T +F
Sbjct: 1695 TIVDGKLKTE------------------------KIFKEINEHS--TSYTFRS-EK---G 1724
Query: 167 LLVTTVVT---LGLVEQASRKSSIFSRLAHHFPFVFNLLR-RNHQQSNDTQ-GNS--EFD 219
LL T T L L+E+A F L+ + ++ T G+S E+
Sbjct: 1725 LLSATQFTQPALTLMEKA----------------AFEDLKSKGLIPADATFAGHSLGEY- 1767
Query: 220 NA--CVSEVIGPPDTSEIEN---KISNESVSEGFYNYSNDAPTLLTDYNNIDASSRSGQS 274
A +++V+ E+ +V SN + N + S
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI----NPGRVAASFSQ 1823
Query: 275 EAEFYESRTEPSNLYDQIVEGTPFQRELLNSWNLGPGYQIAQQWAKERSADSRASTMIDN 334
EA + +++ + T + E++N +N+ Q A + A + +++
Sbjct: 1824 EAL--------QYVVERVGKRTGWLVEIVN-YNV-ENQQYVA--AGDLRALDTVTNVLNF 1871
Query: 335 LGI 337
+ +
Sbjct: 1872 IKL 1874
Score = 30.8 bits (69), Expect = 1.1
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 51/165 (30%)
Query: 243 SVSEGFYNYSNDAPTLLTDYNNIDASSRSGQSEAEFYESRTEPSNLYDQIVE-GTPFQRE 301
++S G + PT + AS Q + +F + EP+ + E TP E
Sbjct: 10 TLSHGSLEHVLLVPTAS--F--FIAS----QLQEQFNKILPEPTEGFAADDEPTTPA--E 59
Query: 302 LLNSWNLGPGYQIAQQWAKERSADSRASTMIDN-LGIFCLPVGVRASEELDFFCSQQQEP 360
L+ + LG Y ++ E S + +++ L F E +
Sbjct: 60 LVGKF-LG--Y-VSSL--VEPSKVGQFDQVLNLCLTEF----------ENCYLEG----- 98
Query: 361 KTENDVKEPPTGASFDVMRDFYSTAATLLKGKTADVRKKQGVLST 405
ND+ ++ AA LL+ + K + ++
Sbjct: 99 ---NDI---------------HALAAKLLQENDTTLVKTKELIKN 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 4e-06
Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 47/191 (24%)
Query: 22 RLLEKD---------SVTLDEALKTANNAVFLAVNAISTLSSDMHRKLIDIVHSNV-KEL 71
L+EK S+ L+ +K N +HR ++D H N+ K
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEY-------------ALHRSIVD--HYNIPKTF 459
Query: 72 KVSEIFKI-LGNYKEAKIGF---GAGSNIKTSILQAIY-DCPFIGAGVKELNGMVICVVA 126
++ L Y + IG + ++ + ++ D F+ ++ + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 127 TSNIIGNNDLQSFL-HTFRQITEYTG--ETIVSFVHEPNLEPDLLV---TTVVTLGL--- 177
N + L+ + + +Y I+ F+ P +E +L+ T ++ + L
Sbjct: 520 ILNTL--QQLKFYKPYICDNDPKYERLVNAILDFL--PKIEENLICSKYTDLLRIALMAE 575
Query: 178 ----VEQASRK 184
E+A ++
Sbjct: 576 DEAIFEEAHKQ 586
Score = 45.6 bits (107), Expect = 2e-05
Identities = 48/313 (15%), Positives = 95/313 (30%), Gaps = 90/313 (28%)
Query: 2 KDLAAKLQDHINFYIDIDTDRLLEKDSVTLDEALKTANNAVFLAVNAISTLSSDM----- 56
K L K Y+D L E L T ++ I+ D
Sbjct: 304 KSLLLK-------YLDCRPQDLPR-------EVLTTNP----RRLSIIAESIRDGLATWD 345
Query: 57 ------HRKLIDIVHSNVKELKVSEIFKILGNYKEAKIGFGAGSNIKTSILQAI------ 104
KL I+ S++ L+ +E K + + F ++I T +L I
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRK---MFDRLSV-FPPSAHIPTILLSLIWFDVIK 401
Query: 105 YDCPFIGAGVKELN--GMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPN 162
D + V +L+ +V + + + + E + +H
Sbjct: 402 SDVMVV---VNKLHKYSLVEK--------QPKESTISIPSIYLELKVKLENEYA-LHRSI 449
Query: 163 LEPDLLVTTVVTLGLVEQASRKSSIFSRLAHHFPFVFNLLRRNHQQSNDTQGNSEFDNAC 222
++ + T + L+ + +S + HH +N + + F
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHL--------KNIEHPERM---TLFRMVF 497
Query: 223 VSEVIGPPDTSEIENKISNESVSEGFYNYSNDAPTLLTDYNNIDASSRSGQSEAEFYESR 282
+ D +E KI ++S + +N S L +FY+
Sbjct: 498 L-------DFRFLEQKIRHDSTA---WNASGSILNTLQQL--------------KFYKPY 533
Query: 283 -TEPSNLYDQIVE 294
+ Y+++V
Sbjct: 534 ICDNDPKYERLVN 546
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.004
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 25 EKDSVT-LDEALK--TANNAVFLAVNA 48
EK ++ L +LK ++A LA+ A
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 33.9 bits (78), Expect = 0.093
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 33 EALKTAN-NAVFLAVNAISTLSSDMHRKLIDIVHSNVKELKVSEIFKILGNYKEAKIGFG 91
E+LK + + + S KL + ++S V + +++I+G G
Sbjct: 245 ESLKNKDVKQLRALAPKYAADYSWFVGKLAEEIYSRVTPQSIIRMYEIVGEN-NQYHGIA 303
Query: 92 AGSNI 96
A + +
Sbjct: 304 ANTEL 308
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 32.6 bits (75), Expect = 0.24
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 82 NYKEAKIGFGAGSNI--------KTSILQAIY 105
N + F G KT++L+A Y
Sbjct: 16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAY 47
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 31.9 bits (73), Expect = 0.35
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 6 AKLQDHINFYIDIDTDRLLE-KDSVTLDEALKTANNAVFLAVNAISTL 52
+L+ H + + I ++L E ++ L A K A+ + AV + L
Sbjct: 178 ERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVEL 225
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 31.7 bits (73), Expect = 0.37
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
L + ++ I I ++LL +L A A++ + AV IS +
Sbjct: 152 RALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDI 200
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 31.9 bits (73), Expect = 0.37
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
L + ++ I I ++LL +L A A++ + AV IS +
Sbjct: 152 RALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDI 200
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 31.4 bits (72), Expect = 0.51
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
KL++ + YI I D++ E ++T+ +A K ++ + AV I+++
Sbjct: 148 EKLKESSDAYIVIHNDKIKELSNRTLTIKDAFKEVDSVLSKAVRGITSI 196
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 31.1 bits (71), Expect = 0.58
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
++ ++ I I DRLL+ S + EA K A+N + V IS L
Sbjct: 158 EAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDL 206
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 31.1 bits (71), Expect = 0.65
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
+ +++ ++ I I DR+LE + + EA + A+N + V IS L
Sbjct: 152 SAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDL 200
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 30.7 bits (70), Expect = 0.85
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
KL+ H++ I I ++L+E V + +A A+ + V IS L
Sbjct: 162 KKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISEL 210
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 30.7 bits (70), Expect = 0.92
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
A L++ + I I DRLL+ +V+L +A ++A+ + V I+ L
Sbjct: 152 AALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDL 200
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 30.9 bits (70), Expect = 0.95
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 90 FGAGSNIKTSILQAIYDCPFIGAGVKELNGMVICVVAT--SNIIGNNDLQSFLHTFRQIT 147
GA N+ ++ + N VI ++ T S G DL + LH FR
Sbjct: 74 MGADENVVEALKTIC----------ERQNPSVIGLLTTGLSETQGC-DLHTALHEFRTQY 122
Query: 148 EYTGETIVSFVHEP 161
E + + V+ P
Sbjct: 123 EEYKDVPIVPVNTP 136
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 30.4 bits (69), Expect = 1.1
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 90 FGAGSNIKTSILQAIYDCPFIGAGVKELNGMVICVVAT--SNIIGNNDLQSFLHTFRQIT 147
FG GSNIKT++ N +I V T S +G +DL +++
Sbjct: 78 FGGGSNIKTAVKNIF----------SLYNPDIIAVHTTCLSETLG-DDLPTYISQMEDAG 126
Query: 148 EYTGETIVSFVHEP 161
+V + P
Sbjct: 127 SIPEGKLVIHTNTP 140
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 28.9 bits (65), Expect = 1.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 80 LGNYKEAKIGFGAGSNI--------KTSILQAIY 105
++ + + F G N+ K+S+L AI
Sbjct: 11 FRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 29.3 bits (66), Expect = 2.6
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 90 FGAGSNIKTSILQAIYDCPFIGAGVKELNGMVICVVAT--SNIIGNNDLQSFLHTFRQIT 147
FG N+K + +I V T + +IG +DL +F++ ++
Sbjct: 125 FGGQQNMKDGLQNCK----------ATYKPDMIAVSTTCMAEVIG-DDLNAFINNSKKEG 173
Query: 148 EYTGETIVSFVHEP 161
E V F H P
Sbjct: 174 FIPDEFPVPFAHTP 187
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 29.2 bits (65), Expect = 2.7
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 82 NYKEAKIGFGAGSNI--------KTSILQAIY 105
++ + + F G N+ K+S+L AI
Sbjct: 13 SHSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
3udx_A* 3ue0_A* 3ue1_A*
Length = 731
Score = 28.4 bits (64), Expect = 6.0
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 249 YNYSNDAPTLLTDYNNIDAS---SRSGQSEAEFYESRTEPSNLYDQI 292
+++ + + + + Q AE+ + P Y QI
Sbjct: 2 HHHHHHENLYFQSHMLLKPLQVYTADNQLIAEYGGKLSIPVE-YKQI 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.372
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,996,796
Number of extensions: 344471
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 23
Length of query: 415
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 319
Effective length of database: 4,021,377
Effective search space: 1282819263
Effective search space used: 1282819263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)