RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 035901
(415 letters)
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 36.1 bits (83), Expect = 0.004
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 7 KLQDHINFYIDIDTDRLLEK-DSVTLDEALKTANNAVFLAVNAISTL 52
+L+ H + + I ++L E ++ L A K A+ + AV + L
Sbjct: 157 RLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVEL 203
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 32.2 bits (73), Expect = 0.029
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 79 ILGNYKEAKIGFGAGS---NIKTSILQAIYDCPFIGAGVKELNGMVICVVATSNIIGNND 135
++ A +G G S + + AI + ++ G+++ + A ++ +
Sbjct: 9 VMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDL-SLGE 67
Query: 136 LQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVT 174
+ Q V V + ++ +L VT V T
Sbjct: 68 YSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVAT 106
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 33.3 bits (76), Expect = 0.031
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLE--KDSVTLDEALKTANNAVFLAVNAISTL 52
A L++ + I I DRLL+ +V+L +A ++A+ + V I+ L
Sbjct: 142 AALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDL 190
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 32.3 bits (73), Expect = 0.071
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 7 KLQDHINFYIDIDTDRLLEK--DSVTLDEALKTANNAVFLAVNAISTL 52
KL+ H++ I I ++L+E+ V + +A A+ + V IS L
Sbjct: 142 KLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISEL 189
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 29.9 bits (67), Expect = 0.41
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 6 AKLQDHINFYIDIDTDRLLEK--DSVTLDEALKTANNAVFLAVNAISTL 52
L + ++ I I ++LL +L A A++ + AV IS +
Sbjct: 142 RALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDI 190
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 107
Score = 28.3 bits (63), Expect = 0.52
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 88 IGFGAGSNIKTSILQAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDLQSFLHTFRQIT 147
IG G + + P + A ++ G+++ + S++ ++ +
Sbjct: 20 IGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLG-LFEINEAASLVQDAA 78
Query: 148 EYTGETIVSFVHEPNLEPDLLVTTVVT 174
I V + +L ++ VT +
Sbjct: 79 HPDANIIFGTVIDDSLGDEVRVTVIAA 105
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 123
Score = 28.8 bits (64), Expect = 0.56
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 79 ILGNYKEAKIGFGAGSNIK--TSILQAIYDCPFIGAGVKELNGMVICVVATSNIIGNNDL 136
++ N A IG G + K + + P + + G +I V+ ++ +
Sbjct: 11 VMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDL-TLEEA 69
Query: 137 QSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVT 174
+ + T + I + NLE + V V+T
Sbjct: 70 REVVATVSSRLDPNATIIWGATIDENLENTVRVLLVIT 107
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 28.7 bits (64), Expect = 1.1
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 13/122 (10%)
Query: 118 NGMVICVVATSNIIGNNDLQSFLHTFRQITEYTGETIVSFVHEPNLEPDLLVTTVVTLGL 177
I VV +G+ + FL RQ GE ++H +T V L
Sbjct: 133 QKAEIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLH---------LTLVPYLET 183
Query: 178 VEQASRK--SSIFSRLAHHFPFVFNLLRRNHQQSNDTQGN--SEFDNACVSEVIGPPDTS 233
E+ K + L L+ R+ + + + F N V P
Sbjct: 184 SEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVE 243
Query: 234 EI 235
+
Sbjct: 244 HL 245
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.5 bits (59), Expect = 3.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 81 GNYKEAKIGFGAGSNI--------KTSILQAIY 105
++ + + F G N+ K+S+L AI
Sbjct: 12 RSHSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 26.5 bits (58), Expect = 6.4
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 192 AHHFPFVFNLLRRNHQQSNDTQGNSEFDNACVSEV 226
+ F F+ LR N S D A V EV
Sbjct: 192 GTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEV 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.372
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,421,264
Number of extensions: 62807
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 13
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.6 bits)