BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035902
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 146/374 (39%), Gaps = 43/374 (11%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
L+ L + +IL+ E W+ A+ + L + +P P P+ +
Sbjct: 16 LSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPMPASQGPYPA 74
Query: 76 RISFINYVDNYVSQMGINP-RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVV 134
R + Y+ Y + + R R + + E + +VA++ +++AR ++
Sbjct: 75 RAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLR---VVARDG-----RQWLARAVIS 126
Query: 135 ATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG 192
ATG G PE GL SF G +HS+ Y F G V ++G GNSG +I ++S+
Sbjct: 127 ATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA 186
Query: 193 ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKG 252
T I P FL VD V+ + + G E P
Sbjct: 187 ETTWITQHEPA----------------FL-ADDVDGRVLFERATERWKAQQEGRE-PDLP 228
Query: 253 PFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGY 312
P F I P +D A +G + P + +++ +G F+A+I+ TG+
Sbjct: 229 PGGFGDIVMVPPVLDARA-----RGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGF 283
Query: 313 KSTVRNWLKRAD------KDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAK 366
+ + + LK D + D G+ P+ W G + G + L G++ A+
Sbjct: 284 RPALSH-LKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWN-GMASATLIGVTRYAR 341
Query: 367 NIANDINLALTDHQ 380
+ DHQ
Sbjct: 342 EAVRQVTAYCADHQ 355
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
T++ + + Y+++ V + + ++ V SA Y ++ W + D E Y A
Sbjct: 82 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT-----DHGEVYRA 136
Query: 130 RYLVVATGENGLI--PEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
+Y+V A G I P +PGL +FEGE +H++ + G G+ V V+G G++G ++
Sbjct: 137 KYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITS 196
Query: 188 LSSCGACTSIVVRGP 202
L+ ++ VR P
Sbjct: 197 LAPEVEHLTVFVRTP 211
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
T++ + + Y+++ V + + ++ V SA Y ++ W + D E Y A
Sbjct: 115 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT-----DHGEVYRA 169
Query: 130 RYLVVATGENGLI--PEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
+Y+V A G I P +PGL +FEGE +H++ + G G+ V V+G G++G ++
Sbjct: 170 KYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITS 229
Query: 188 LSSCGACTSIVVRGP 202
L+ ++ VR P
Sbjct: 230 LAPEVEHLTVFVRTP 244
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 73 FVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130
F + + YV+ M + R++ V +A Y EN + W + LD E R
Sbjct: 83 FASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVT-----LDNEEVVTCR 137
Query: 131 YLVVATG--ENGLIPEVPGLGSFEGEYMHSSKYEN-------GGKFIGKNVLVVGCGNSG 181
+L+ ATG +P++ G+ SF+GE HSS++ G F GK V V+G G +G
Sbjct: 138 FLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATG 197
Query: 182 MEI 184
++I
Sbjct: 198 VQI 200
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 77 ISFINYV-DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ +IN+V D + + GI +H +V +A++DE W + + + ARYL++A
Sbjct: 97 LRYINFVADKFDLRSGIT--FHTTVTAAAFDEATNTWTVDTNHG-----DRIRARYLIMA 149
Query: 136 TGENGL--IPEVPGLGSFEGEYMHSSKYENGG-KFIGKNVLVVGCGNSGMEIAYDLSSCG 192
+G+ + +P PGL F G H+ + + F G+ V V+G G+SG++++ ++
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 193 ACTSIVVRGP 202
A + R P
Sbjct: 210 AELFVFQRTP 219
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 77 ISFINYV-DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ +IN+V D + + GI +H +V +A++DE W + + + ARYL++A
Sbjct: 97 LRYINFVADKFDLRSGIT--FHTTVTAAAFDEATNTWTVDTNHG-----DRIRARYLIMA 149
Query: 136 TGENGL--IPEVPGLGSFEGEYMHSSKYENGG-KFIGKNVLVVGCGNSGMEIAYDLSSCG 192
+G+ + +P PGL F G H+ + + F G+ V V+G G+SG++++ ++
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 193 ACTSIVVRGP 202
A + R P
Sbjct: 210 AELFVFQRTP 219
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 77 ISFINYV-DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ +IN+V D + + GI +H +V +A++DE W + + + ARYL++A
Sbjct: 97 LRYINFVADKFDLRSGIT--FHTTVTAAAFDEATNTWTVDTNHG-----DRIRARYLIMA 149
Query: 136 TGENGL--IPEVPGLGSFEGEYMHSSKYENGG-KFIGKNVLVVGCGNSGMEIAYDLSSCG 192
+G+ + +P PGL F G H+ + + F G+ V V+G G+SG++++ ++
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 193 ACTSIVVRGP 202
A + R P
Sbjct: 210 AELFVFQRTP 219
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 77 ISFINYV-DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ +IN+V D + + GI +H +V +A++DE W + + + ARYL++A
Sbjct: 97 LRYINFVADKFDLRSGIT--FHTTVTAAAFDEATNTWTVDTNHG-----DRIRARYLIMA 149
Query: 136 TGENGL--IPEVPGLGSFEGEYMHSSKYENGG-KFIGKNVLVVGCGNSGMEIAYDLSSCG 192
+G+ + +P PGL F G H+ + + F G+ V V+G G+SG++++ ++
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 193 ACTSIVVRGP 202
A + R P
Sbjct: 210 AELFVFQRTP 219
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFE 152
R+ V SA DE W + D +E AR+LVVA G N P GL F
Sbjct: 119 RFDTRVTSAVLDEEGLRWTV-----RTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFT 173
Query: 153 GEYMHSSKYENGG-KFIGKNVLVVGCGNSGME 183
G+ +H++++ + G F GK V V+G G+SG++
Sbjct: 174 GDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQ 205
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFE 152
R+ V SA DE W + D +E AR+LVVA G N P GL F
Sbjct: 119 RFDTRVTSAVLDEEGLRWTV-----RTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFT 173
Query: 153 GEYMHSSKYENGG-KFIGKNVLVVGCGNSGME 183
G+ +H++++ + G F GK V V+G G+SG++
Sbjct: 174 GDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQ 205
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFE 152
R+ V SA DE W + D +E AR+LVVA G N P GL F
Sbjct: 119 RFDTRVTSAVLDEEGLRWTV-----RTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFT 173
Query: 153 GEYMHSSKYENGG-KFIGKNVLVVGCGNSGME 183
G+ +H++++ + G F GK V V+G G+SG++
Sbjct: 174 GDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQ 205
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
++ PR +Y+ V + G+ R++ +V ++E+++ + + ++ D
Sbjct: 96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF 155
Query: 130 RYLVVATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
Y+V TG +PE G F G +H+ + + +F K VL+VG +S +I
Sbjct: 156 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQ 215
Query: 188 LSSCGA 193
GA
Sbjct: 216 CYKYGA 221
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
++ PR +Y+ V + G+ R++ +V ++E+++ + + ++ D
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 130 RYLVVATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
Y+V TG +PE G F G +H+ + + +F K VL+VG S +I
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 188 LSSCGA 193
GA
Sbjct: 221 CYKYGA 226
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
++ PR +Y+ V + G+ R++ +V ++E+++ + + ++ D
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 130 RYLVVATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
Y+V TG +PE G F G +H+ + + +F K VL+VG S +I
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 188 LSSCGA 193
GA
Sbjct: 221 CYKYGA 226
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
++ PR +Y+ V + G+ R++ +V ++E+++ + + ++ D
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 130 RYLVVATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
Y+V TG +PE G F G +H+ + + +F K VL+VG S +I
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 188 LSSCGA 193
GA
Sbjct: 221 CYKYGA 226
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
++ PR +Y+ V + G+ R++ +V ++E+++ + + ++ D
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 130 RYLVVATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
Y+V TG +PE G F G +H+ + + +F K VL+VG S +I
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 188 LSSCGA 193
GA
Sbjct: 221 CYKYGA 226
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
++ PR +Y+ V + G+ R++ +V ++E+++ + + ++ D
Sbjct: 96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF 155
Query: 130 RYLVVATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
Y+V TG +PE G F G +H+ + + +F K VL+VG S +I
Sbjct: 156 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 215
Query: 188 LSSCGA 193
GA
Sbjct: 216 CYKYGA 221
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 72 TFVPRISFINYVDNYVSQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129
++ PR +Y+ V + G+ R++ +V ++E+++ + + ++ D
Sbjct: 96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF 155
Query: 130 RYLVVATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
Y+V TG +PE G F G +H+ + + +F K VL+VG S +I
Sbjct: 156 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 215
Query: 188 LSSCGA 193
GA
Sbjct: 216 CYKYGA 221
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 129 ARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDL 188
AR +++ATG VPG + + + + +G F GK V V+G GNSG+E A DL
Sbjct: 315 ARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDL 374
Query: 189 SSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIV-VMLSKMKFGNLFKYGLE 247
+ +++ P E+ +L K K VD I+ +++K GLE
Sbjct: 375 AGIVEHVTLLEFAP------EMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLE 428
Query: 248 RPKK--GPFYFKAITGQTPTIDV--------GAMDKIRKGEIQVFPSITSINRNEVEFEN 297
+ G + A+ G I + GA+++ R GEI + + + +
Sbjct: 429 YRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGD 488
Query: 298 GKIEEFEAIIFATG 311
++ II ATG
Sbjct: 489 CTTVPYKQIIIATG 502
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 129 ARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDL 188
AR ++VATG VPG + + + + +G F GK V V+G GNSG+E A DL
Sbjct: 104 ARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDL 163
Query: 189 S 189
+
Sbjct: 164 A 164
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 75 PRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133
P++ + V V Q+ NP Y + + + + + Y A+ ++
Sbjct: 60 PKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQG-----NAYTAKAVI 114
Query: 134 VATGENGLIPE---VPGLGSFEGE---YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYD 187
+A G P PG FEG Y SK E F GK VL+VG G+S ++ A +
Sbjct: 115 IAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAE----FQGKRVLIVGGGDSAVDWALN 170
Query: 188 LSSCGACTSIVVRGP 202
L +++ R P
Sbjct: 171 LLDTARRITLIHRRP 185
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 125 EEYVARYLVVATGENGLIPE-VPG--LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSG 181
E Y A +++VATG + PE +PG LG+ + + K V+VVG G G
Sbjct: 145 EVYSANHILVATGGKAIFPENIPGFELGTDSDGFFRLEEQP-------KKVVVVGAGYIG 197
Query: 182 MEIAYDLSSCGACTSIVVRG 201
+E+A G+ T +V+RG
Sbjct: 198 IELAGVFHGLGSETHLVIRG 217
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
EY L++ATG + +P +F+G + +S +G + + V V+G GN+ +E A
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEAFKGRGVSASATCDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 186 YDLSSCGACTSIVVRGPVHVLTREIVF-AGMLLLKFLPCKLVDFIVVM 232
LS+ + VH++ R F A +L+K L K+ + +++
Sbjct: 162 LYLSN--------IASEVHLIHRRDGFRAEKILIKRLMDKVENGNIIL 201
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
EY L++ATG + +P +F+G + + +G + + V V+G GN+ +E A
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 186 YDLSSCGACTSIVVRGPVHVLTREIVF-AGMLLLKFLPCKLVDFIVVM 232
LS+ + VH++ R F A +L+K L K+ + +++
Sbjct: 162 LYLSN--------IASEVHLIHRRDGFRAEKILIKRLMDKVENGNIIL 201
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
EY L++ATG + +P +F+G + + +G + + V V+G GN+ +E A
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 186 YDLSSCGACTSIVVRGPVHVLTREIVF-AGMLLLKFLPCKLVDFIVVM 232
LS+ + VH++ R F A +L+K L K+ + +++
Sbjct: 162 LYLSN--------IASEVHLIHRRDGFRAEKILIKRLMDKVENGNIIL 201
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
EY A+ +++ATG + +PG +F G+ + + +G + GK V+V+G G++ +E
Sbjct: 109 EYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEG 168
Query: 186 YDLSSCGACTSIVVR 200
L+ +++ R
Sbjct: 169 MFLTKFADEVTVIHR 183
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 105 YDENAKAWIIVAKNTALDAY-------EEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157
Y+ N +V +A DAY E Y A Y+ VATG+ + G +H
Sbjct: 101 YELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYG------IH 154
Query: 158 SSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA 193
S+ E+ F +V+G SG + AY L+ G+
Sbjct: 155 YSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGS 190
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 152 EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG 192
+G + +++G + GK LV+GCG G IAY L+ G
Sbjct: 108 DGAGFLGAAHKHGFEPAGKRALVIGCGGVGSAIAYALAEAG 148
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 142 IPEVPGLGSF----EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG 192
IP + GL + G +HSS + F+G++VLVVG +S ++ L+
Sbjct: 181 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVA 235
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 142 IPEVPGLGSF----EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG 192
IP + GL + G +HSS + F+G++VLVVG +S ++ L+
Sbjct: 183 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVA 237
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 271 MDKIRKGEI--QVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+D++ K EI ++ I +IN NE+ F++GK+E ++ II G
Sbjct: 195 LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 237
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 271 MDKIRKGEI--QVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+D++ K EI ++ I +IN NE+ F++GK+E ++ II G
Sbjct: 195 LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 237
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 271 MDKIRKGEI--QVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+D++ K EI ++ I +IN NE+ F++GK+E ++ II G
Sbjct: 196 LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 238
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 271 MDKIRKGEI--QVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+D++ K EI ++ I +IN NE+ F++GK+E ++ II G
Sbjct: 195 LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 237
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 271 MDKIRKGEI--QVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+D++ K EI ++ I +IN NE+ F++GK+E ++ II G
Sbjct: 195 LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 237
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 271 MDKIRKGEI--QVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+D++ K EI ++ I +IN NE+ F++GK+E ++ II G
Sbjct: 195 LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 237
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 55 AKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAK---- 110
A Q E HM P F I+ N+ S+ R H S E+ N
Sbjct: 56 AAQIREAIHMYGPDYG--FDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG 113
Query: 111 -AWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIG 169
A + AK ++ E A ++++ATG P++PG+ EY S +
Sbjct: 114 FARFVDAKTLEVNG-ETITADHILIATGGRPSHPDIPGV-----EYGIDSDGFFALPALP 167
Query: 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
+ V VVG G +E+A ++ GA T + VR
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHLFVR 198
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 271 MDKIRKGEI--QVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+D++ K EI ++ I +IN NE+ F++GK+E ++ II G
Sbjct: 195 LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 237
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
EY L++ATG + +P +F+G + + +G + + V V+G GN+ +E A
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 186 YDLSSCGACTSIVVRGPVHVLTREIVF-AGMLLLKFLPCKLVDFIVVM 232
LS+ + VH++ R F A +L+K L K+ + +++
Sbjct: 162 LYLSN--------IASEVHLIHRRDGFRAEKILIKRLMDKVENGNIIL 201
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEI 184
+ + AR +++A G +VPG G + S +G F +++ V+G G+S ME
Sbjct: 111 QTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEE 170
Query: 185 AYDLSSCGACTSIVVR 200
A L+ ++V R
Sbjct: 171 ATFLTRFARSVTLVHR 186
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 127 YVARYLVVATGENGLIP-EVPGLGSFEGEYMHSSKY--ENGGKFIGKNVLVVGCGNSGME 183
Y +R +++A G P ++P LG+ + S Y ++ F GK V++VG G+S ++
Sbjct: 118 YRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGGDSALD 177
Query: 184 IAYDLSSCGACTSIVVRG 201
L A ++V RG
Sbjct: 178 WTVGLIKNAASVTLVHRG 195
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 69 RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128
R +V R++ I Y +N R H A++ + K I V+ ++Y
Sbjct: 86 RDAXYVSRLNAIXYQNNLTKSHIEIIRGH-----AAFTSDPKPTIEVSG-------KKYT 133
Query: 129 ARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGMEIAY 186
A ++++ATG +P P G + S + + G++V +VG G +E+A
Sbjct: 134 APHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAVEMAG 189
Query: 187 DLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 190 ILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 239
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
EY L++ATG + +P +F+G + + +G + + V V+G GN+ +E A
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEA 161
Query: 186 YDLSSCGACTSIVVRGPVHVLTREIVF-AGMLLLKFLPCKLVDFIVVM 232
LS+ + VH++ R F A +L+K L K+ + +++
Sbjct: 162 LYLSN--------IASEVHLIHRRDGFRAEKILIKRLMDKVENGNIIL 201
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 77 ISFIN-YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
I IN + D YV ++GI D +A+ V +T + A ++V+A
Sbjct: 91 IGAINSFWDGYVERLGIT----------RVDGHAR---FVDAHTIEVEGQRLSADHIVIA 137
Query: 136 TGENGLIPEVPG--LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA 193
TG ++P +PG LG + + K V ++G G G+E+A L S G+
Sbjct: 138 TGGRPIVPRLPGAELGITSDGFFALQQQP-------KRVAIIGAGYIGIELAGLLRSFGS 190
Query: 194 CTSIV 198
++V
Sbjct: 191 EVTVV 195
>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
pdb|3ULK|B Chain B, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
Length = 491
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 155 YMHSSKYENGGKFI-GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
+M ++ +G ++ GK V++VGCG G+ ++ G S +R
Sbjct: 22 FMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR 68
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR--EIVFAGM 215
+G V+VVG G SG+ A LS G +++ H+ R + FAG+
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGI 52
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR--EIVFAGM 215
+G V+VVG G SG+ A LS G +++ H+ R + FAG+
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGI 52
>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|B Chain B, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|C Chain C, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|D Chain D, Escherichia Coli Ketol-Acid Reductoisomerase
Length = 491
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 155 YMHSSKYENGGKFI-GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
+M ++ +G ++ GK V++VGCG G+ ++ G S +R
Sbjct: 22 FMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALR 68
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 129 ARYLVVATGENGLIPEVPGLGSFEGEYMHSSK----YENGGKFIGKNVLVVGCGNSGMEI 184
RY+++A+G +PG+ EY +S Y+ + + ++++++G G G+EI
Sbjct: 133 TRYMIIASGAETAKLRLPGV-----EYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEI 187
Query: 185 AYDLSSCGACTSIVV---RGPVHVLTREIVFAGMLLLKF 220
A G T I+ R + + ++IV + +LK
Sbjct: 188 ASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKL 226
>pdb|3MQ1|A Chain A, Crystal Structure Of Dust Mite Allergen Der P 5
pdb|3MQ1|B Chain B, Crystal Structure Of Dust Mite Allergen Der P 5
pdb|3MQ1|C Chain C, Crystal Structure Of Dust Mite Allergen Der P 5
pdb|3MQ1|D Chain D, Crystal Structure Of Dust Mite Allergen Der P 5
pdb|3MQ1|E Chain E, Crystal Structure Of Dust Mite Allergen Der P 5
pdb|3MQ1|F Chain F, Crystal Structure Of Dust Mite Allergen Der P 5
Length = 103
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 272 DKIRKGEIQVFPSITSINRNE----VEFENGKIEEFEAII-FATGYKSTVRNWLKRADKD 326
++I+KGE+ +F IN E E ++ + E + II G + + ++R D D
Sbjct: 11 EQIKKGELALFYLQEQINHFEEKPTKEMKDKIVAEMDTIIAMIDGVRGVLDRLMQRKDLD 70
Query: 327 FFDEYGM 333
F++Y +
Sbjct: 71 IFEQYNL 77
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 62 PHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTAL 121
P P+ + + + P +IN +D+Y INP+Y+ +D + WI + +
Sbjct: 161 PEFPYLTSSGKYAP---YINNLDSYYDF--INPQYYNQGGDGFWDSDLNMWISQSNDEKK 215
Query: 122 DAYEEYVARYLVVATGENGLI 142
+ + + + LV TG +G I
Sbjct: 216 EDFLYGLTQRLV--TGTDGFI 234
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143
DN V+ + R E D+N K I +++ATGE P
Sbjct: 218 DNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNK-------------IILATGERPKYP 264
Query: 144 EVPGLGSF--EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
E+PG + + + S Y F GK LV+G +E A L+S G +++VR
Sbjct: 265 EIPGAVEYGITSDDLFSLPY-----FPGKT-LVIGASYVALECAGFLASLGGDVTVMVR 317
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143
DN V+ + R E D+N K I +++ATGE P
Sbjct: 218 DNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNK-------------IILATGERPKYP 264
Query: 144 EVPGLGSF--EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
E+PG + + + S Y F GK LV+G +E A L+S G +++VR
Sbjct: 265 EIPGAVEYGITSDDLFSLPY-----FPGKT-LVIGASYVALECAGFLASLGGDVTVMVR 317
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 145 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 200
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 201 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNXTEELENAGVEVLKFSQVKEV 254
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143
DN V+ + R E D+N K I +++ATGE P
Sbjct: 218 DNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNK-------------IILATGERPKYP 264
Query: 144 EVPGLGSF--EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
E+PG + + + S Y F GK LV+G +E A L+S G +++VR
Sbjct: 265 EIPGAVEYGITSDDLFSLPY-----FPGKT-LVIGASYVALECAGFLASLGGDVTVMVR 317
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEI 184
+ Y A+Y+++ TG V G + G+ +G F GK V+ +G GNSG
Sbjct: 111 DTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIA 170
Query: 185 AYDLS 189
A +S
Sbjct: 171 AISMS 175
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 125 EEYVARYLVVATGENGLIP---EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSG 181
E + ++ +++ G P E+ +EG+ +H ++ KF G+ V ++G G+S
Sbjct: 108 ETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYF-VDDLQKFAGRRVAILGGGDSA 166
Query: 182 MEIAYDLSSCGACTSIVVRGP---VHVLTREIVFAGM--LLLKFLPCKLV 226
++ A L SI+ R H + E + A +L F+P +L+
Sbjct: 167 VDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELI 216
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 55 AKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAK---- 110
A Q E HM P F I+ N+ S+ R H S E+ N
Sbjct: 56 AAQIREAIHMYGPDYG--FDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG 113
Query: 111 -AWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIG 169
A + AK ++ E A ++++ATG P++PG+ EY S +
Sbjct: 114 FARFVDAKTLEVNG-ETITADHILIATGGRPSHPDIPGV-----EYGIDSDGFFALPALP 167
Query: 170 KNVLVVGCGNSGMEIAYDLSSCGACTSI 197
+ V VVG G G+E+ ++ GA T +
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKTHL 195
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 145 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 200
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 201 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 254
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 145 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 200
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 201 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 254
>pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IJK|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Length = 271
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 163 NGGKFIGKNVLVVGCGNS-GMEIAYDLSSCGACTSIVVRGPVHV---LTREIVFAG--ML 216
N +F GKNVL+ G G EIA L+S G I R V L E+ G
Sbjct: 23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAA 82
Query: 217 LLKFLPCKLVDFI 229
++KF DFI
Sbjct: 83 VIKFDAASESDFI 95
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIV 198
K+V+VVG G SG+ AY LS G +++
Sbjct: 34 KHVVVVGAGMSGLSAAYVLSGAGHQVTVL 62
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 128 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 183
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 184 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 237
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 144 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 199
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 200 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 253
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 145 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 200
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 201 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 254
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 146 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 201
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 202 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 255
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 23/78 (29%)
Query: 156 MHSSKYENGGKFIGKNVLVVGCGNSGMEIAY-------DLSSCGACTSI----------- 197
M S +++ KF +V++VG G+SG+ AY DL C +S+
Sbjct: 52 MTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQ 111
Query: 198 -----VVRGPVHVLTREI 210
V+R P H+ +E+
Sbjct: 112 LFSAMVMRKPAHLFLQEL 129
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 128 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 183
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 184 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 237
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYM--HSSKYENGGKFIGKNVLVVGCGNSGM 182
++Y A ++++ATG +P P G + S + + G++V +VG G +
Sbjct: 145 KKYTAPHILIATGG---MPSTPHESQIPGASLGITSDGFFQLEELPGRSV-IVGAGYIAV 200
Query: 183 EIAYDLSSCGACTSIVVRGPVHVL-----------TREIVFAGMLLLKFLPCKLV 226
E+A LS+ G+ TS+++R VL T E+ AG+ +LKF K V
Sbjct: 201 EMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 254
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEI 184
EE ARY+++ATG LIP + E + +S + K ++VVG G G+E+
Sbjct: 126 EELEARYILIATGSAPLIPP---WAQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLEL 182
Query: 185 AYDLSSCGA 193
GA
Sbjct: 183 GVVWHRLGA 191
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 92 INPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126
+ P Y + + YDE W I NT LD EE
Sbjct: 131 VAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEE 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,459,546
Number of Sequences: 62578
Number of extensions: 502388
Number of successful extensions: 1430
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 109
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)