Query 035902
Match_columns 381
No_of_seqs 168 out of 2304
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 5.1E-44 1.1E-48 337.3 20.9 359 4-376 2-396 (531)
2 COG1249 Lpd Pyruvate/2-oxoglut 100.0 3.3E-39 7.2E-44 296.4 22.5 305 1-374 2-334 (454)
3 PLN02172 flavin-containing mon 100.0 5.2E-38 1.1E-42 293.1 30.4 306 3-376 10-352 (461)
4 COG0492 TrxB Thioredoxin reduc 100.0 2.9E-37 6.3E-42 270.7 28.1 289 1-380 1-304 (305)
5 TIGR01292 TRX_reduct thioredox 100.0 1.2E-36 2.5E-41 273.3 28.0 284 4-376 1-300 (300)
6 PRK10262 thioredoxin reductase 100.0 6.6E-36 1.4E-40 270.0 28.0 290 3-378 6-316 (321)
7 TIGR01421 gluta_reduc_1 glutat 100.0 3.3E-36 7.1E-41 282.8 23.9 298 2-374 1-327 (450)
8 COG2072 TrkA Predicted flavopr 100.0 5.1E-35 1.1E-39 272.0 31.3 350 2-358 7-390 (443)
9 PRK08010 pyridine nucleotide-d 100.0 1.3E-35 2.8E-40 279.3 26.3 300 1-375 1-317 (441)
10 PRK05249 soluble pyridine nucl 100.0 8.6E-36 1.9E-40 282.4 24.7 308 1-375 3-335 (461)
11 PRK06116 glutathione reductase 100.0 6.2E-36 1.4E-40 282.2 22.8 300 1-375 1-328 (450)
12 PLN02507 glutathione reductase 100.0 1.7E-35 3.7E-40 280.4 24.9 303 3-374 25-362 (499)
13 PRK15317 alkyl hydroperoxide r 100.0 5.7E-35 1.2E-39 279.1 28.2 288 3-380 211-515 (517)
14 PRK06370 mercuric reductase; V 100.0 1.3E-35 2.9E-40 280.7 23.7 300 1-375 3-334 (463)
15 TIGR01424 gluta_reduc_2 glutat 100.0 1.2E-35 2.6E-40 279.4 22.8 299 3-374 2-325 (446)
16 PRK13512 coenzyme A disulfide 100.0 4E-35 8.6E-40 275.0 24.9 284 4-375 2-312 (438)
17 TIGR03140 AhpF alkyl hydropero 100.0 9.7E-35 2.1E-39 277.1 27.7 286 3-378 212-514 (515)
18 PRK06467 dihydrolipoamide dehy 100.0 8.4E-35 1.8E-39 274.8 24.4 305 1-375 1-337 (471)
19 PRK06416 dihydrolipoamide dehy 100.0 1.8E-34 4E-39 273.3 23.9 301 3-375 4-334 (462)
20 PRK07818 dihydrolipoamide dehy 100.0 2.8E-34 6E-39 271.8 25.0 308 1-375 2-336 (466)
21 COG1252 Ndh NADH dehydrogenase 100.0 7.2E-35 1.6E-39 261.1 19.6 289 1-378 1-333 (405)
22 PRK06115 dihydrolipoamide dehy 100.0 3.3E-34 7.1E-39 270.7 24.9 306 1-375 1-338 (466)
23 TIGR03143 AhpF_homolog putativ 100.0 8E-34 1.7E-38 272.7 27.2 287 1-378 1-310 (555)
24 PRK14694 putative mercuric red 100.0 4.7E-34 1E-38 270.2 25.1 304 3-375 6-335 (468)
25 TIGR01423 trypano_reduc trypan 100.0 3.9E-34 8.4E-39 269.4 24.3 306 2-375 2-351 (486)
26 PRK07251 pyridine nucleotide-d 100.0 7.7E-34 1.7E-38 267.0 26.0 299 1-374 1-315 (438)
27 TIGR02053 MerA mercuric reduct 100.0 1.9E-34 4E-39 273.1 21.8 301 4-375 1-329 (463)
28 PRK13748 putative mercuric red 100.0 5.3E-34 1.1E-38 276.5 25.2 304 3-375 98-428 (561)
29 PRK06292 dihydrolipoamide dehy 100.0 1.3E-34 2.8E-39 274.3 19.7 300 1-375 1-331 (460)
30 PTZ00058 glutathione reductase 100.0 9.4E-34 2E-38 269.4 23.9 304 3-375 48-432 (561)
31 PRK14727 putative mercuric red 100.0 1.4E-33 3E-38 267.3 24.8 304 3-375 16-346 (479)
32 PTZ00318 NADH dehydrogenase-li 100.0 2.7E-34 6E-39 268.2 19.7 292 1-379 8-350 (424)
33 PLN02546 glutathione reductase 100.0 2.1E-34 4.5E-39 274.1 18.9 299 3-375 79-413 (558)
34 PRK07845 flavoprotein disulfid 100.0 5.2E-33 1.1E-37 262.5 28.1 308 4-375 2-337 (466)
35 PRK07846 mycothione reductase; 100.0 6.5E-34 1.4E-38 267.1 21.5 297 3-375 1-325 (451)
36 PRK14989 nitrite reductase sub 100.0 1E-33 2.2E-38 280.6 22.8 284 1-375 1-310 (847)
37 PTZ00052 thioredoxin reductase 100.0 1.1E-33 2.4E-38 268.3 21.6 306 1-375 2-341 (499)
38 PRK05976 dihydrolipoamide dehy 100.0 2.5E-33 5.4E-38 265.7 23.5 310 1-375 1-343 (472)
39 PRK09564 coenzyme A disulfide 100.0 3.8E-33 8.3E-38 263.4 23.3 287 5-375 2-317 (444)
40 PRK04965 NADH:flavorubredoxin 100.0 6.6E-33 1.4E-37 255.8 24.3 281 1-376 1-303 (377)
41 PRK06327 dihydrolipoamide dehy 100.0 4.6E-33 9.9E-38 263.7 23.6 310 1-375 1-347 (475)
42 TIGR01438 TGR thioredoxin and 100.0 9.2E-33 2E-37 260.8 23.6 304 3-375 2-344 (484)
43 PRK09754 phenylpropionate diox 100.0 6.2E-33 1.3E-37 257.4 20.7 285 1-376 1-310 (396)
44 TIGR01350 lipoamide_DH dihydro 100.0 1.6E-32 3.5E-37 260.2 22.2 302 4-375 2-332 (461)
45 PRK12831 putative oxidoreducta 100.0 1.1E-32 2.3E-37 259.0 19.9 277 3-378 140-462 (464)
46 TIGR01316 gltA glutamate synth 100.0 1.7E-32 3.6E-37 257.4 20.4 270 3-376 133-449 (449)
47 KOG1399 Flavin-containing mono 100.0 7.7E-32 1.7E-36 246.7 24.2 252 2-319 5-274 (448)
48 PRK06912 acoL dihydrolipoamide 100.0 5.2E-32 1.1E-36 255.5 22.2 300 5-375 2-330 (458)
49 PTZ00153 lipoamide dehydrogena 100.0 3.1E-32 6.6E-37 262.2 20.1 308 3-375 116-495 (659)
50 TIGR03169 Nterm_to_SelD pyridi 100.0 6.2E-32 1.3E-36 248.7 20.7 280 5-379 1-313 (364)
51 TIGR03452 mycothione_red mycot 100.0 6.3E-32 1.4E-36 253.9 21.0 297 3-375 2-328 (452)
52 PRK11749 dihydropyrimidine deh 100.0 6.3E-32 1.4E-36 254.9 19.8 274 4-379 141-454 (457)
53 TIGR02374 nitri_red_nirB nitri 100.0 9.8E-32 2.1E-36 267.0 21.5 279 6-375 1-301 (785)
54 PRK12779 putative bifunctional 100.0 2E-31 4.3E-36 266.7 22.9 273 4-377 307-627 (944)
55 PRK09853 putative selenate red 100.0 3.3E-31 7.2E-36 261.1 22.6 285 3-377 539-842 (1019)
56 KOG0405 Pyridine nucleotide-di 100.0 1.7E-30 3.6E-35 220.4 21.0 305 3-376 20-351 (478)
57 PRK12778 putative bifunctional 100.0 4.2E-31 9E-36 262.8 19.4 273 4-378 432-751 (752)
58 KOG0404 Thioredoxin reductase 100.0 2E-30 4.3E-35 206.8 18.3 291 4-377 9-319 (322)
59 PRK12814 putative NADPH-depend 100.0 3E-30 6.4E-35 251.8 20.6 275 3-380 193-504 (652)
60 PRK12770 putative glutamate sy 100.0 9.5E-30 2.1E-34 232.4 22.0 284 4-377 19-350 (352)
61 KOG1335 Dihydrolipoamide dehyd 100.0 4.6E-30 9.9E-35 220.4 17.2 304 3-374 39-376 (506)
62 TIGR03315 Se_ygfK putative sel 100.0 7.8E-30 1.7E-34 252.7 21.3 283 4-375 538-838 (1012)
63 PRK12810 gltD glutamate syntha 100.0 8.3E-30 1.8E-34 240.9 19.4 284 4-380 144-468 (471)
64 PRK12775 putative trifunctiona 100.0 1.9E-29 4.2E-34 254.7 22.8 276 4-379 431-757 (1006)
65 PRK12769 putative oxidoreducta 100.0 5.6E-29 1.2E-33 244.0 22.8 274 3-378 327-653 (654)
66 TIGR01318 gltD_gamma_fam gluta 100.0 5E-29 1.1E-33 234.7 20.2 272 4-377 142-466 (467)
67 KOG1336 Monodehydroascorbate/f 100.0 5.5E-29 1.2E-33 221.2 18.3 264 4-359 75-354 (478)
68 PF13738 Pyr_redox_3: Pyridine 100.0 5.9E-29 1.3E-33 210.2 13.0 188 7-204 1-202 (203)
69 PRK12809 putative oxidoreducta 100.0 9.4E-28 2E-32 234.3 21.6 275 3-379 310-637 (639)
70 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.2E-27 4.8E-32 222.8 19.6 272 17-375 1-304 (427)
71 PRK13984 putative oxidoreducta 100.0 1.3E-27 2.9E-32 233.0 18.3 274 3-378 283-603 (604)
72 PLN02852 ferredoxin-NADP+ redu 100.0 1.7E-26 3.7E-31 214.9 23.8 322 3-378 26-423 (491)
73 COG3634 AhpF Alkyl hydroperoxi 100.0 2.5E-27 5.4E-32 201.2 15.8 285 4-376 212-514 (520)
74 TIGR01317 GOGAT_sm_gam glutama 99.9 9.2E-27 2E-31 220.2 19.6 306 4-380 144-482 (485)
75 KOG4716 Thioredoxin reductase 99.9 4.4E-26 9.5E-31 193.0 21.3 315 3-376 19-366 (503)
76 PRK12771 putative glutamate sy 99.9 1E-26 2.3E-31 224.6 19.2 273 4-379 138-446 (564)
77 TIGR01372 soxA sarcosine oxida 99.9 3.6E-25 7.8E-30 225.2 26.3 281 3-376 163-471 (985)
78 COG1251 NirB NAD(P)H-nitrite r 99.9 4.3E-25 9.3E-30 205.5 17.5 285 1-377 1-308 (793)
79 KOG2495 NADH-dehydrogenase (ub 99.9 9.1E-25 2E-29 191.0 18.4 291 3-376 55-396 (491)
80 PF13434 K_oxygenase: L-lysine 99.9 4.6E-25 1E-29 198.3 13.1 220 3-229 2-248 (341)
81 COG3486 IucD Lysine/ornithine 99.9 7.2E-22 1.6E-26 172.6 22.2 334 2-356 4-387 (436)
82 KOG0399 Glutamate synthase [Am 99.9 5E-21 1.1E-25 183.4 13.6 305 4-374 1786-2117(2142)
83 COG0446 HcaD Uncharacterized N 99.9 3.4E-20 7.3E-25 174.1 18.7 275 6-374 1-309 (415)
84 COG0493 GltD NADPH-dependent g 99.8 1.3E-20 2.7E-25 174.1 12.0 294 4-377 124-452 (457)
85 KOG1346 Programmed cell death 99.8 7.3E-20 1.6E-24 159.5 11.6 303 3-378 178-522 (659)
86 PTZ00188 adrenodoxin reductase 99.8 4.4E-18 9.6E-23 156.2 23.3 161 3-202 39-251 (506)
87 KOG1800 Ferredoxin/adrenodoxin 99.8 1.8E-18 3.9E-23 149.4 15.9 158 3-202 20-214 (468)
88 PRK06567 putative bifunctional 99.8 1E-18 2.3E-23 171.0 15.7 323 4-380 384-773 (1028)
89 COG1148 HdrA Heterodisulfide r 99.7 9.9E-17 2.1E-21 142.8 15.4 108 269-377 419-545 (622)
90 PRK09897 hypothetical protein; 99.7 6.5E-16 1.4E-20 146.1 16.6 189 4-202 2-245 (534)
91 PF07992 Pyr_redox_2: Pyridine 99.7 2.8E-18 6.1E-23 144.6 0.5 121 5-148 1-130 (201)
92 COG4529 Uncharacterized protei 99.7 1.4E-14 3.1E-19 130.8 22.9 359 4-373 2-459 (474)
93 KOG2755 Oxidoreductase [Genera 99.7 3.5E-15 7.7E-20 122.8 15.8 291 5-357 1-322 (334)
94 COG2081 Predicted flavoprotein 99.6 8.7E-15 1.9E-19 128.9 12.2 132 1-139 1-166 (408)
95 KOG3851 Sulfide:quinone oxidor 99.6 5.3E-15 1.1E-19 125.2 9.8 107 268-378 240-362 (446)
96 PRK05329 anaerobic glycerol-3- 99.5 4E-13 8.7E-18 123.9 14.5 35 2-36 1-35 (422)
97 PF03486 HI0933_like: HI0933-l 99.4 4.5E-13 9.7E-18 123.2 10.1 130 4-139 1-165 (409)
98 PRK06834 hypothetical protein; 99.4 1.1E-11 2.4E-16 117.9 15.5 140 1-147 1-163 (488)
99 PRK04176 ribulose-1,5-biphosph 99.4 1.1E-11 2.4E-16 107.5 13.0 138 3-140 25-173 (257)
100 TIGR02032 GG-red-SF geranylger 99.3 8.9E-12 1.9E-16 111.4 12.2 134 4-143 1-151 (295)
101 TIGR00292 thiazole biosynthesi 99.3 2E-11 4.2E-16 105.6 13.2 137 3-139 21-169 (254)
102 COG1635 THI4 Ribulose 1,5-bisp 99.3 1E-11 2.3E-16 100.2 10.5 137 3-139 30-177 (262)
103 PRK06184 hypothetical protein; 99.3 2.7E-11 5.9E-16 116.3 15.1 138 1-142 1-170 (502)
104 TIGR02023 BchP-ChlP geranylger 99.3 1.9E-11 4.1E-16 113.6 13.4 137 4-143 1-158 (388)
105 PRK08013 oxidoreductase; Provi 99.3 1.6E-11 3.5E-16 114.5 12.9 139 1-147 1-175 (400)
106 PF13454 NAD_binding_9: FAD-NA 99.3 3.2E-11 7E-16 96.7 12.5 125 7-138 1-155 (156)
107 PRK10157 putative oxidoreducta 99.3 5.4E-11 1.2E-15 111.6 15.4 136 1-143 1-167 (428)
108 PRK08244 hypothetical protein; 99.3 6E-11 1.3E-15 113.8 15.8 138 3-144 2-163 (493)
109 PRK06847 hypothetical protein; 99.3 4.4E-11 9.4E-16 110.9 13.5 136 1-143 1-166 (375)
110 COG0644 FixC Dehydrogenases (f 99.3 3.9E-11 8.5E-16 111.6 13.0 137 1-143 1-155 (396)
111 PRK10015 oxidoreductase; Provi 99.3 1.7E-10 3.7E-15 108.1 16.1 135 1-142 1-166 (429)
112 PF01494 FAD_binding_3: FAD bi 99.3 4E-11 8.7E-16 110.1 11.8 139 3-144 1-176 (356)
113 PRK08773 2-octaprenyl-3-methyl 99.2 1.3E-10 2.9E-15 108.2 13.8 138 3-147 6-176 (392)
114 PRK07190 hypothetical protein; 99.2 1.4E-10 3.1E-15 110.2 14.0 132 3-141 5-166 (487)
115 TIGR01790 carotene-cycl lycope 99.2 1.2E-10 2.7E-15 108.3 13.3 129 5-140 1-141 (388)
116 PLN02463 lycopene beta cyclase 99.2 1.3E-10 2.9E-15 108.6 13.3 132 3-143 28-172 (447)
117 PF01946 Thi4: Thi4 family; PD 99.2 9.4E-11 2E-15 95.4 10.6 139 3-141 17-166 (230)
118 PRK09126 hypothetical protein; 99.2 1.1E-10 2.4E-15 108.8 12.6 140 1-147 1-174 (392)
119 PRK06183 mhpA 3-(3-hydroxyphen 99.2 3.5E-10 7.6E-15 109.5 16.3 138 3-143 10-177 (538)
120 PRK07333 2-octaprenyl-6-methox 99.2 1.3E-10 2.9E-15 108.7 13.1 138 4-148 2-175 (403)
121 PRK05714 2-octaprenyl-3-methyl 99.2 1.1E-10 2.4E-15 109.3 11.1 138 3-147 2-175 (405)
122 PRK07494 2-octaprenyl-6-methox 99.2 1.8E-10 3.9E-15 107.2 11.8 137 1-144 5-171 (388)
123 PRK05732 2-octaprenyl-6-methox 99.2 3.2E-10 7E-15 105.8 13.0 137 1-144 1-173 (395)
124 PRK06126 hypothetical protein; 99.2 7.4E-10 1.6E-14 107.6 15.8 140 3-144 7-192 (545)
125 PF05834 Lycopene_cycl: Lycope 99.2 4.8E-10 1E-14 103.4 13.4 145 5-157 1-159 (374)
126 PRK07045 putative monooxygenas 99.2 7E-10 1.5E-14 103.3 14.5 135 3-144 5-169 (388)
127 TIGR00136 gidA glucose-inhibit 99.2 2.8E-09 6E-14 101.4 18.4 132 4-141 1-155 (617)
128 TIGR02028 ChlP geranylgeranyl 99.2 5.2E-10 1.1E-14 104.1 13.2 144 4-148 1-168 (398)
129 PRK08849 2-octaprenyl-3-methyl 99.1 4.9E-10 1.1E-14 104.0 12.9 140 1-147 1-174 (384)
130 COG0654 UbiH 2-polyprenyl-6-me 99.1 6.2E-10 1.3E-14 103.3 13.5 136 3-145 2-167 (387)
131 PRK08850 2-octaprenyl-6-methox 99.1 4.9E-10 1.1E-14 104.9 12.9 139 1-147 2-175 (405)
132 PRK07608 ubiquinone biosynthes 99.1 4.1E-10 8.9E-15 104.9 12.3 137 3-147 5-174 (388)
133 PRK08020 ubiF 2-octaprenyl-3-m 99.1 5.6E-10 1.2E-14 104.0 12.3 136 3-145 5-174 (391)
134 PRK07236 hypothetical protein; 99.1 1.5E-09 3.2E-14 100.9 14.6 134 1-143 4-157 (386)
135 PRK07364 2-octaprenyl-6-methox 99.1 1E-09 2.2E-14 103.2 13.4 138 3-144 18-185 (415)
136 COG3380 Predicted NAD/FAD-depe 99.1 4E-10 8.6E-15 94.1 9.2 124 4-138 2-158 (331)
137 PRK08163 salicylate hydroxylas 99.1 6.4E-10 1.4E-14 103.9 11.7 134 3-143 4-169 (396)
138 PRK06185 hypothetical protein; 99.1 1.1E-09 2.3E-14 102.7 12.9 138 3-143 6-172 (407)
139 TIGR01988 Ubi-OHases Ubiquinon 99.1 9.9E-10 2.1E-14 102.2 12.5 131 5-142 1-165 (385)
140 PLN00093 geranylgeranyl diphos 99.1 1.1E-09 2.5E-14 102.9 12.7 141 3-144 39-203 (450)
141 PRK11445 putative oxidoreducta 99.1 2.4E-09 5.1E-14 98.1 14.5 132 4-143 2-160 (351)
142 PRK05192 tRNA uridine 5-carbox 99.1 1.4E-09 3E-14 103.7 13.2 133 1-140 2-157 (618)
143 PRK06617 2-octaprenyl-6-methox 99.1 1.4E-09 3.1E-14 100.5 13.1 132 4-144 2-164 (374)
144 TIGR01989 COQ6 Ubiquinone bios 99.1 1.1E-09 2.4E-14 103.3 12.3 140 4-148 1-191 (437)
145 PRK07588 hypothetical protein; 99.1 1.2E-09 2.5E-14 101.9 11.9 133 4-144 1-162 (391)
146 PRK06753 hypothetical protein; 99.1 2.1E-09 4.6E-14 99.5 13.4 129 5-143 2-155 (373)
147 PRK07538 hypothetical protein; 99.1 5.2E-09 1.1E-13 98.2 16.2 138 4-143 1-168 (413)
148 PLN02697 lycopene epsilon cycl 99.1 2.6E-09 5.6E-14 101.6 14.0 130 3-140 108-248 (529)
149 TIGR01984 UbiH 2-polyprenyl-6- 99.1 1.6E-09 3.4E-14 100.7 12.1 131 5-142 1-164 (382)
150 PF01266 DAO: FAD dependent ox 99.0 1.1E-09 2.3E-14 100.7 10.3 57 75-139 145-202 (358)
151 PRK08132 FAD-dependent oxidore 99.0 5.5E-09 1.2E-13 101.5 15.6 137 3-143 23-188 (547)
152 TIGR00275 flavoprotein, HI0933 99.0 2.1E-09 4.6E-14 99.9 12.0 125 7-139 1-159 (400)
153 PLN02661 Putative thiazole syn 99.0 1.9E-09 4.2E-14 95.8 10.8 136 3-139 92-243 (357)
154 PRK08243 4-hydroxybenzoate 3-m 99.0 5E-09 1.1E-13 97.6 14.1 135 3-144 2-167 (392)
155 PRK05868 hypothetical protein; 99.0 6.5E-09 1.4E-13 95.9 14.4 133 4-144 2-164 (372)
156 PF00070 Pyr_redox: Pyridine n 99.0 4.2E-09 9.1E-14 74.1 10.2 80 5-119 1-80 (80)
157 COG0579 Predicted dehydrogenas 99.0 3.7E-09 8E-14 96.7 12.2 60 75-139 151-210 (429)
158 PRK08294 phenol 2-monooxygenas 99.0 7.8E-09 1.7E-13 101.4 15.3 142 3-144 32-214 (634)
159 PF12831 FAD_oxidored: FAD dep 99.0 2.2E-10 4.7E-15 107.5 4.2 132 5-139 1-149 (428)
160 PRK11259 solA N-methyltryptoph 99.0 8.3E-09 1.8E-13 95.7 14.2 57 75-139 147-203 (376)
161 KOG2820 FAD-dependent oxidored 99.0 5.9E-09 1.3E-13 89.8 11.4 132 3-139 7-211 (399)
162 PRK12266 glpD glycerol-3-phosp 99.0 2.1E-08 4.5E-13 96.2 16.3 60 78-139 156-215 (508)
163 PRK13369 glycerol-3-phosphate 99.0 1.9E-08 4E-13 96.6 15.7 60 77-139 155-214 (502)
164 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 1.4E-08 3E-13 94.4 14.0 135 3-144 2-167 (390)
165 PF00070 Pyr_redox: Pyridine n 99.0 1.6E-09 3.6E-14 76.2 6.1 49 171-220 1-49 (80)
166 PRK11728 hydroxyglutarate oxid 98.9 6.8E-09 1.5E-13 96.7 11.6 57 76-140 148-204 (393)
167 PRK06475 salicylate hydroxylas 98.9 1.3E-08 2.9E-13 95.0 13.3 138 3-144 2-171 (400)
168 PF01134 GIDA: Glucose inhibit 98.9 2.5E-09 5.5E-14 96.6 7.8 128 5-139 1-151 (392)
169 TIGR03219 salicylate_mono sali 98.9 1.2E-08 2.7E-13 95.7 12.5 128 5-141 2-160 (414)
170 TIGR01813 flavo_cyto_c flavocy 98.9 4.1E-08 9E-13 92.9 16.2 135 5-141 1-193 (439)
171 PRK08274 tricarballylate dehyd 98.9 3.2E-08 6.9E-13 94.4 15.4 136 2-139 3-191 (466)
172 PRK06996 hypothetical protein; 98.9 2E-08 4.3E-13 93.8 13.1 131 3-138 11-172 (398)
173 PF00890 FAD_binding_2: FAD bi 98.9 2.8E-08 6E-13 93.5 13.8 136 5-141 1-204 (417)
174 PRK06481 fumarate reductase fl 98.9 6.6E-08 1.4E-12 92.8 16.6 135 3-139 61-250 (506)
175 TIGR01377 soxA_mon sarcosine o 98.9 2.7E-08 5.8E-13 92.4 13.5 57 75-139 143-199 (380)
176 PRK12409 D-amino acid dehydrog 98.9 5E-08 1.1E-12 91.6 15.2 61 77-139 197-257 (410)
177 PRK05976 dihydrolipoamide dehy 98.9 4.2E-08 9.2E-13 93.6 14.9 105 4-144 181-285 (472)
178 COG0029 NadB Aspartate oxidase 98.9 5.2E-08 1.1E-12 88.7 14.3 133 5-139 9-195 (518)
179 PRK04965 NADH:flavorubredoxin 98.9 2.8E-08 6E-13 92.1 12.5 100 4-142 142-241 (377)
180 TIGR01789 lycopene_cycl lycope 98.9 2.2E-08 4.8E-13 92.0 11.6 138 5-156 1-154 (370)
181 PRK11101 glpA sn-glycerol-3-ph 98.9 5.1E-08 1.1E-12 94.3 14.5 63 76-139 148-210 (546)
182 TIGR01350 lipoamide_DH dihydro 98.9 7.9E-08 1.7E-12 91.6 15.5 102 4-143 171-272 (461)
183 COG1249 Lpd Pyruvate/2-oxoglut 98.8 5.3E-08 1.2E-12 90.7 13.3 104 4-145 174-277 (454)
184 PF13450 NAD_binding_8: NAD(P) 98.8 5.8E-09 1.3E-13 70.4 4.8 49 8-56 1-49 (68)
185 PRK05945 sdhA succinate dehydr 98.8 6.4E-08 1.4E-12 94.3 14.0 138 1-140 1-197 (575)
186 PRK06416 dihydrolipoamide dehy 98.8 1E-07 2.2E-12 90.8 14.6 104 4-144 173-276 (462)
187 PRK07251 pyridine nucleotide-d 98.8 9.1E-08 2E-12 90.5 13.4 100 4-144 158-257 (438)
188 PRK13339 malate:quinone oxidor 98.8 1.8E-07 3.9E-12 88.4 15.2 61 78-139 185-246 (497)
189 PRK01747 mnmC bifunctional tRN 98.8 3.8E-08 8.2E-13 97.7 10.9 57 75-139 406-462 (662)
190 PRK09754 phenylpropionate diox 98.8 6.2E-08 1.4E-12 90.3 11.7 99 4-142 145-243 (396)
191 PRK08641 sdhA succinate dehydr 98.8 2.7E-07 5.9E-12 90.0 16.5 39 1-39 1-39 (589)
192 PRK08958 sdhA succinate dehydr 98.8 1.7E-07 3.7E-12 91.3 14.9 138 3-140 7-206 (588)
193 PRK07121 hypothetical protein; 98.8 3.4E-07 7.3E-12 87.8 16.8 63 76-140 176-239 (492)
194 PLN02464 glycerol-3-phosphate 98.8 1.8E-07 3.9E-12 91.7 15.0 65 75-139 230-295 (627)
195 PRK08401 L-aspartate oxidase; 98.8 9.4E-08 2E-12 90.8 12.6 129 4-141 2-176 (466)
196 COG0578 GlpA Glycerol-3-phosph 98.8 1.7E-07 3.6E-12 87.8 13.8 56 82-139 169-224 (532)
197 PRK07804 L-aspartate oxidase; 98.8 1.8E-07 3.9E-12 90.4 14.7 138 3-140 16-210 (541)
198 PLN02985 squalene monooxygenas 98.8 2.6E-07 5.6E-12 88.5 15.4 139 3-144 43-212 (514)
199 PRK05249 soluble pyridine nucl 98.8 1.2E-07 2.6E-12 90.4 13.1 101 4-144 176-276 (461)
200 PTZ00139 Succinate dehydrogena 98.8 2.3E-07 5.1E-12 90.8 15.2 137 3-139 29-228 (617)
201 PRK06115 dihydrolipoamide dehy 98.7 2.1E-07 4.6E-12 88.5 14.5 105 4-143 175-279 (466)
202 PRK06116 glutathione reductase 98.7 1.4E-07 3E-12 89.6 13.2 102 4-144 168-269 (450)
203 PRK08275 putative oxidoreducta 98.7 1.1E-07 2.4E-12 92.3 12.7 139 3-141 9-201 (554)
204 PRK06854 adenylylsulfate reduc 98.7 2.6E-07 5.6E-12 90.4 15.0 136 3-139 11-194 (608)
205 PRK07818 dihydrolipoamide dehy 98.7 2.7E-07 5.8E-12 88.0 14.7 104 4-143 173-276 (466)
206 PRK06452 sdhA succinate dehydr 98.7 4E-07 8.7E-12 88.5 16.1 136 3-140 5-198 (566)
207 TIGR02053 MerA mercuric reduct 98.7 2.3E-07 4.9E-12 88.5 14.2 105 4-145 167-271 (463)
208 PRK07573 sdhA succinate dehydr 98.7 3.1E-07 6.6E-12 90.3 15.4 36 3-38 35-70 (640)
209 TIGR01320 mal_quin_oxido malat 98.7 2.4E-07 5.1E-12 88.1 13.9 63 76-139 177-239 (483)
210 PTZ00383 malate:quinone oxidor 98.7 1.4E-07 3E-12 89.4 12.3 58 75-139 209-272 (497)
211 PRK06912 acoL dihydrolipoamide 98.7 2.5E-07 5.5E-12 87.9 14.1 102 4-144 171-272 (458)
212 TIGR01424 gluta_reduc_2 glutat 98.7 1.9E-07 4.1E-12 88.5 13.1 100 4-143 167-266 (446)
213 TIGR03329 Phn_aa_oxid putative 98.7 1.3E-07 2.8E-12 89.9 11.8 55 76-139 182-236 (460)
214 PRK07057 sdhA succinate dehydr 98.7 5.2E-07 1.1E-11 88.1 16.1 138 3-140 12-211 (591)
215 TIGR01373 soxB sarcosine oxida 98.7 2.5E-07 5.5E-12 86.7 13.5 57 77-139 183-239 (407)
216 PRK06327 dihydrolipoamide dehy 98.7 3.8E-07 8.3E-12 87.0 14.8 105 4-144 184-288 (475)
217 PRK09078 sdhA succinate dehydr 98.7 4.9E-07 1.1E-11 88.4 15.8 138 3-140 12-212 (598)
218 TIGR03378 glycerol3P_GlpB glyc 98.7 5.6E-06 1.2E-10 76.0 21.4 33 4-36 1-33 (419)
219 PF06039 Mqo: Malate:quinone o 98.7 1.5E-07 3.3E-12 85.5 10.9 60 79-139 183-243 (488)
220 PF04820 Trp_halogenase: Trypt 98.7 3.1E-08 6.7E-13 93.4 6.9 64 74-143 151-214 (454)
221 PRK08071 L-aspartate oxidase; 98.7 3.3E-07 7.1E-12 88.0 13.9 136 1-141 1-191 (510)
222 PLN00128 Succinate dehydrogena 98.7 6.6E-07 1.4E-11 87.7 16.2 138 3-140 50-250 (635)
223 TIGR01812 sdhA_frdA_Gneg succi 98.7 4.5E-07 9.8E-12 88.5 14.9 134 5-140 1-191 (566)
224 PRK06370 mercuric reductase; V 98.7 3.2E-07 7E-12 87.4 13.5 103 4-143 172-274 (463)
225 PLN02507 glutathione reductase 98.7 3E-07 6.4E-12 88.0 13.2 101 4-144 204-304 (499)
226 COG1252 Ndh NADH dehydrogenase 98.7 1.4E-07 3.1E-12 85.7 10.4 95 4-141 156-263 (405)
227 PRK07845 flavoprotein disulfid 98.7 3.6E-07 7.8E-12 86.9 13.4 101 4-144 178-278 (466)
228 PRK05257 malate:quinone oxidor 98.7 3.1E-07 6.8E-12 87.3 12.8 61 78-139 184-245 (494)
229 PRK06263 sdhA succinate dehydr 98.7 6.1E-07 1.3E-11 87.0 15.1 136 3-140 7-197 (543)
230 PLN02927 antheraxanthin epoxid 98.7 5.5E-07 1.2E-11 87.6 14.4 128 3-140 81-248 (668)
231 TIGR00551 nadB L-aspartate oxi 98.6 6.2E-07 1.4E-11 85.8 14.5 135 3-141 2-190 (488)
232 TIGR03364 HpnW_proposed FAD de 98.6 4E-07 8.6E-12 84.1 12.7 33 4-36 1-33 (365)
233 PLN02815 L-aspartate oxidase 98.6 6.1E-07 1.3E-11 87.2 14.4 136 3-139 29-221 (594)
234 PRK14727 putative mercuric red 98.6 4.8E-07 1E-11 86.4 13.5 99 4-144 189-287 (479)
235 PRK14694 putative mercuric red 98.6 4.8E-07 1E-11 86.3 13.3 99 4-144 179-277 (468)
236 COG0445 GidA Flavin-dependent 98.6 7.9E-08 1.7E-12 88.4 7.5 132 2-139 3-157 (621)
237 TIGR01421 gluta_reduc_1 glutat 98.6 5.6E-07 1.2E-11 85.2 13.6 103 4-144 167-269 (450)
238 PRK07846 mycothione reductase; 98.6 3.9E-07 8.5E-12 86.2 12.6 100 4-144 167-266 (451)
239 PRK06175 L-aspartate oxidase; 98.6 4.7E-07 1E-11 85.1 12.9 37 3-40 4-40 (433)
240 PRK07803 sdhA succinate dehydr 98.6 9.5E-07 2.1E-11 86.8 15.5 37 3-39 8-44 (626)
241 TIGR03385 CoA_CoA_reduc CoA-di 98.6 3.6E-07 7.8E-12 86.2 12.2 99 4-143 138-236 (427)
242 KOG1335 Dihydrolipoamide dehyd 98.6 6.3E-07 1.4E-11 78.8 12.5 153 4-192 212-367 (506)
243 TIGR03452 mycothione_red mycot 98.6 9.3E-07 2E-11 83.8 15.0 100 4-144 170-269 (452)
244 PRK06069 sdhA succinate dehydr 98.6 9.7E-07 2.1E-11 86.2 15.4 38 3-40 5-45 (577)
245 PRK09564 coenzyme A disulfide 98.6 3.8E-07 8.3E-12 86.5 12.3 100 4-143 150-249 (444)
246 KOG2415 Electron transfer flav 98.6 2.7E-07 5.8E-12 82.0 10.0 137 3-139 76-255 (621)
247 PRK08205 sdhA succinate dehydr 98.6 1.5E-06 3.2E-11 84.9 16.3 65 76-140 139-206 (583)
248 PRK13512 coenzyme A disulfide 98.6 2.8E-07 6.1E-12 87.0 10.8 96 4-143 149-244 (438)
249 PRK14989 nitrite reductase sub 98.6 4E-07 8.7E-12 91.9 12.2 103 4-143 146-248 (847)
250 COG1232 HemY Protoporphyrinoge 98.6 1.3E-06 2.8E-11 80.8 14.5 47 5-51 2-50 (444)
251 PRK06292 dihydrolipoamide dehy 98.6 1.9E-06 4.1E-11 82.1 16.1 103 4-144 170-272 (460)
252 PRK08010 pyridine nucleotide-d 98.6 7.8E-07 1.7E-11 84.2 13.3 99 4-143 159-257 (441)
253 PRK06467 dihydrolipoamide dehy 98.6 9.8E-07 2.1E-11 84.1 14.0 104 4-144 175-278 (471)
254 PTZ00052 thioredoxin reductase 98.6 7.6E-07 1.6E-11 85.3 13.1 100 4-144 183-282 (499)
255 PRK13748 putative mercuric red 98.6 7.4E-07 1.6E-11 87.1 13.0 99 4-144 271-369 (561)
256 PRK13977 myosin-cross-reactive 98.6 5.5E-07 1.2E-11 85.4 11.4 39 3-41 22-64 (576)
257 PRK12842 putative succinate de 98.6 1.3E-06 2.9E-11 85.2 14.5 38 3-40 9-46 (574)
258 PRK00711 D-amino acid dehydrog 98.6 1.1E-06 2.4E-11 82.6 13.6 56 76-139 200-256 (416)
259 TIGR01438 TGR thioredoxin and 98.6 1.1E-06 2.4E-11 83.8 13.4 103 4-144 181-283 (484)
260 COG1233 Phytoene dehydrogenase 98.6 9E-08 2E-12 91.3 5.9 43 1-43 1-43 (487)
261 PRK08626 fumarate reductase fl 98.6 2.7E-06 5.8E-11 83.9 16.1 36 3-38 5-40 (657)
262 PRK07208 hypothetical protein; 98.5 2.3E-07 5E-12 88.9 8.4 44 1-44 2-45 (479)
263 COG0665 DadA Glycine/D-amino a 98.5 6.4E-07 1.4E-11 83.4 11.2 37 2-38 3-39 (387)
264 TIGR01423 trypano_reduc trypan 98.5 1.1E-06 2.4E-11 83.7 12.8 101 4-143 188-291 (486)
265 PTZ00367 squalene epoxidase; P 98.5 5.7E-07 1.2E-11 86.7 10.8 34 3-36 33-66 (567)
266 TIGR01176 fum_red_Fp fumarate 98.5 2.1E-06 4.6E-11 83.5 14.9 137 3-140 3-195 (580)
267 PRK12835 3-ketosteroid-delta-1 98.5 3.2E-06 7E-11 82.4 16.1 38 3-40 11-48 (584)
268 PTZ00058 glutathione reductase 98.5 1.2E-06 2.6E-11 84.5 13.0 103 4-144 238-340 (561)
269 TIGR01811 sdhA_Bsu succinate d 98.5 2E-06 4.3E-11 84.1 14.6 33 6-38 1-33 (603)
270 TIGR02374 nitri_red_nirB nitri 98.5 6.3E-07 1.4E-11 90.4 11.4 101 4-143 141-241 (785)
271 COG0446 HcaD Uncharacterized N 98.5 9.8E-07 2.1E-11 82.9 11.9 101 4-141 137-238 (415)
272 PTZ00306 NADH-dependent fumara 98.5 3.1E-06 6.8E-11 88.8 16.4 38 3-40 409-446 (1167)
273 PRK09231 fumarate reductase fl 98.5 3.2E-06 7E-11 82.4 15.2 38 3-40 4-43 (582)
274 PTZ00153 lipoamide dehydrogena 98.5 2.1E-06 4.4E-11 84.2 13.6 108 4-144 313-431 (659)
275 PRK12839 hypothetical protein; 98.4 1.4E-05 3E-10 77.8 17.7 38 3-40 8-45 (572)
276 PTZ00318 NADH dehydrogenase-li 98.4 1.5E-06 3.3E-11 81.7 10.7 93 5-141 175-281 (424)
277 COG2081 Predicted flavoprotein 98.4 1.3E-06 2.9E-11 77.9 9.5 147 169-316 3-169 (408)
278 PRK07395 L-aspartate oxidase; 98.4 1.8E-06 3.8E-11 83.6 11.2 37 3-40 9-45 (553)
279 PRK06134 putative FAD-binding 98.4 1.4E-05 3E-10 78.2 17.5 38 3-40 12-49 (581)
280 PRK09077 L-aspartate oxidase; 98.4 5.5E-06 1.2E-10 80.2 14.4 37 3-40 8-44 (536)
281 PRK12845 3-ketosteroid-delta-1 98.4 4.6E-06 1E-10 80.9 13.9 37 3-40 16-52 (564)
282 COG3075 GlpB Anaerobic glycero 98.4 1.5E-06 3.2E-11 75.1 9.0 34 2-35 1-34 (421)
283 PLN02546 glutathione reductase 98.4 3.9E-06 8.4E-11 81.0 13.0 102 4-144 253-354 (558)
284 PRK08255 salicylyl-CoA 5-hydro 98.4 8.7E-07 1.9E-11 89.2 8.9 117 5-140 2-141 (765)
285 PRK12844 3-ketosteroid-delta-1 98.4 1E-05 2.2E-10 78.6 15.8 38 3-40 6-43 (557)
286 PRK12837 3-ketosteroid-delta-1 98.4 5.9E-06 1.3E-10 79.6 13.9 37 3-40 7-43 (513)
287 PRK10262 thioredoxin reductase 98.4 4.7E-06 1E-10 75.5 12.0 104 4-143 147-251 (321)
288 KOG2614 Kynurenine 3-monooxyge 98.4 1.1E-06 2.4E-11 78.5 7.6 37 3-39 2-38 (420)
289 PRK07843 3-ketosteroid-delta-1 98.4 1.4E-05 3.1E-10 77.6 15.9 38 3-40 7-44 (557)
290 KOG1336 Monodehydroascorbate/f 98.4 3E-06 6.6E-11 77.0 10.3 106 4-146 214-319 (478)
291 KOG0029 Amine oxidase [Seconda 98.4 4.7E-07 1E-11 85.6 5.4 39 2-40 14-52 (501)
292 TIGR03140 AhpF alkyl hydropero 98.3 5.4E-06 1.2E-10 79.9 12.3 101 4-144 353-454 (515)
293 PRK12843 putative FAD-binding 98.3 8.5E-06 1.8E-10 79.6 13.7 38 3-40 16-53 (578)
294 TIGR02061 aprA adenosine phosp 98.3 1.4E-05 3.1E-10 77.9 15.1 34 5-38 1-38 (614)
295 TIGR01292 TRX_reduct thioredox 98.3 5.3E-06 1.2E-10 74.3 11.5 98 4-142 142-240 (300)
296 KOG1298 Squalene monooxygenase 98.3 2.3E-06 5E-11 75.4 8.2 33 4-36 46-78 (509)
297 COG1053 SdhA Succinate dehydro 98.3 8.2E-06 1.8E-10 78.4 12.8 38 3-40 6-43 (562)
298 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 2.2E-06 4.8E-11 79.0 8.4 36 4-39 1-36 (433)
299 PRK07512 L-aspartate oxidase; 98.3 1E-05 2.3E-10 77.8 12.4 61 76-140 135-197 (513)
300 TIGR00292 thiazole biosynthesi 98.3 5E-06 1.1E-10 72.1 8.9 192 168-377 20-254 (254)
301 PRK04176 ribulose-1,5-biphosph 98.3 5E-06 1.1E-10 72.3 8.9 193 168-378 24-256 (257)
302 PRK13800 putative oxidoreducta 98.2 3.8E-05 8.2E-10 78.9 16.0 35 3-37 13-47 (897)
303 TIGR02485 CobZ_N-term precorri 98.2 1.4E-05 3.1E-10 75.5 12.0 60 76-139 122-182 (432)
304 KOG2311 NAD/FAD-utilizing prot 98.2 8.2E-06 1.8E-10 74.0 9.3 131 3-139 28-185 (679)
305 PRK11883 protoporphyrinogen ox 98.2 1.6E-06 3.5E-11 82.5 5.3 41 4-44 1-43 (451)
306 KOG2404 Fumarate reductase, fl 98.2 2.3E-05 5E-10 67.7 11.4 38 4-41 10-47 (477)
307 TIGR03169 Nterm_to_SelD pyridi 98.2 1.1E-05 2.3E-10 74.5 10.5 93 4-141 146-244 (364)
308 PRK15317 alkyl hydroperoxide r 98.2 1.7E-05 3.6E-10 76.6 11.8 100 4-143 352-452 (517)
309 TIGR02733 desat_CrtD C-3',4' d 98.2 3.1E-06 6.7E-11 81.4 6.6 39 3-41 1-39 (492)
310 PF13434 K_oxygenase: L-lysine 98.2 1.7E-05 3.6E-10 72.0 10.4 132 3-139 190-340 (341)
311 TIGR00031 UDP-GALP_mutase UDP- 98.1 3.1E-06 6.6E-11 77.4 5.3 38 4-41 2-39 (377)
312 PRK12770 putative glutamate sy 98.1 1.8E-05 3.9E-10 72.6 10.4 100 4-142 173-288 (352)
313 PLN02576 protoporphyrinogen ox 98.1 4.2E-06 9.2E-11 80.6 6.5 39 3-41 12-51 (496)
314 PRK07233 hypothetical protein; 98.1 3E-06 6.5E-11 80.2 5.4 37 5-41 1-37 (434)
315 COG3349 Uncharacterized conser 98.1 3E-06 6.4E-11 78.3 5.0 38 4-41 1-38 (485)
316 TIGR00562 proto_IX_ox protopor 98.1 3.8E-06 8.2E-11 80.2 5.9 38 4-41 3-44 (462)
317 COG3573 Predicted oxidoreducta 98.1 3.7E-05 8.1E-10 66.8 11.2 40 1-40 3-44 (552)
318 PLN02268 probable polyamine ox 98.1 4E-06 8.6E-11 79.4 5.9 38 4-41 1-38 (435)
319 COG2509 Uncharacterized FAD-de 98.1 2.9E-05 6.3E-10 70.4 10.6 57 77-139 173-229 (486)
320 PLN02568 polyamine oxidase 98.1 4.5E-06 9.7E-11 80.4 5.8 42 2-43 4-50 (539)
321 PRK12416 protoporphyrinogen ox 98.1 4.6E-06 1E-10 79.6 5.1 38 4-41 2-45 (463)
322 TIGR02730 carot_isom carotene 98.0 6.8E-06 1.5E-10 79.0 6.0 37 4-40 1-37 (493)
323 COG1635 THI4 Ribulose 1,5-bisp 98.0 2.9E-05 6.2E-10 63.5 8.4 197 165-378 26-261 (262)
324 TIGR02734 crtI_fam phytoene de 98.0 6.6E-06 1.4E-10 79.4 5.5 36 6-41 1-36 (502)
325 PLN02676 polyamine oxidase 98.0 1E-05 2.3E-10 77.2 6.7 45 3-47 26-71 (487)
326 TIGR01316 gltA glutamate synth 98.0 8.7E-05 1.9E-09 70.3 12.4 102 4-143 273-390 (449)
327 KOG2495 NADH-dehydrogenase (ub 98.0 1.6E-05 3.5E-10 71.3 6.3 98 4-141 219-330 (491)
328 PRK01438 murD UDP-N-acetylmura 98.0 1.8E-05 3.9E-10 75.9 7.2 33 4-36 17-49 (480)
329 COG2907 Predicted NAD/FAD-bind 98.0 1.9E-05 4.1E-10 68.9 6.5 37 4-41 9-45 (447)
330 KOG0042 Glycerol-3-phosphate d 98.0 1.3E-05 2.8E-10 73.8 5.8 39 3-41 67-105 (680)
331 TIGR03143 AhpF_homolog putativ 97.9 8.1E-05 1.8E-09 72.5 11.4 100 4-143 144-249 (555)
332 PTZ00363 rab-GDP dissociation 97.9 9.5E-06 2.1E-10 76.0 4.8 43 2-44 3-45 (443)
333 COG0562 Glf UDP-galactopyranos 97.9 1.3E-05 2.9E-10 69.2 5.0 38 4-41 2-39 (374)
334 TIGR02731 phytoene_desat phyto 97.9 1.5E-05 3.2E-10 75.9 5.4 36 5-40 1-36 (453)
335 PRK12831 putative oxidoreducta 97.9 0.00017 3.7E-09 68.6 12.3 101 4-143 282-399 (464)
336 PRK05335 tRNA (uracil-5-)-meth 97.9 1.6E-05 3.5E-10 73.0 5.1 35 4-38 3-37 (436)
337 PLN02661 Putative thiazole syn 97.9 0.00012 2.7E-09 65.6 10.5 199 165-379 88-330 (357)
338 KOG2844 Dimethylglycine dehydr 97.9 7.5E-05 1.6E-09 70.7 9.3 57 76-139 186-242 (856)
339 COG1231 Monoamine oxidase [Ami 97.8 2.1E-05 4.5E-10 71.6 5.0 39 2-40 6-44 (450)
340 KOG2852 Possible oxidoreductas 97.8 0.0001 2.2E-09 62.8 8.3 37 3-39 10-52 (380)
341 PLN02529 lysine-specific histo 97.8 2.5E-05 5.5E-10 77.2 5.6 39 3-41 160-198 (738)
342 KOG2853 Possible oxidoreductas 97.8 0.00022 4.8E-09 62.3 10.1 34 3-36 86-123 (509)
343 KOG0685 Flavin-containing amin 97.8 3.1E-05 6.7E-10 70.6 5.2 38 4-41 22-60 (498)
344 PF03486 HI0933_like: HI0933-l 97.8 3.4E-05 7.4E-10 71.5 5.6 144 171-316 2-168 (409)
345 KOG2960 Protein involved in th 97.8 2E-05 4.4E-10 63.8 3.4 136 3-139 76-233 (328)
346 PRK11749 dihydropyrimidine deh 97.8 0.00033 7.1E-09 66.7 12.1 101 4-142 274-389 (457)
347 TIGR02732 zeta_caro_desat caro 97.8 3.6E-05 7.7E-10 73.4 5.3 36 5-40 1-36 (474)
348 PRK12834 putative FAD-binding 97.7 3.9E-05 8.5E-10 74.6 5.6 38 3-40 4-43 (549)
349 KOG1346 Programmed cell death 97.7 9.2E-05 2E-09 66.2 6.9 100 4-143 348-452 (659)
350 PRK06847 hypothetical protein; 97.7 0.00016 3.5E-09 67.0 8.7 146 169-317 4-166 (375)
351 PLN02328 lysine-specific histo 97.7 5E-05 1.1E-09 75.6 5.4 39 3-41 238-276 (808)
352 PLN02463 lycopene beta cyclase 97.7 0.00015 3.2E-09 68.3 8.3 138 169-315 28-170 (447)
353 COG3486 IucD Lysine/ornithine 97.7 0.00033 7.1E-09 62.9 9.8 136 5-145 189-345 (436)
354 TIGR02462 pyranose_ox pyranose 97.7 5.2E-05 1.1E-09 72.5 5.2 39 4-42 1-39 (544)
355 KOG3855 Monooxygenase involved 97.7 0.00077 1.7E-08 60.5 11.8 34 3-36 36-73 (481)
356 PRK12778 putative bifunctional 97.7 0.0014 3E-08 66.4 15.1 102 4-143 571-689 (752)
357 PLN02487 zeta-carotene desatur 97.6 6.7E-05 1.4E-09 72.5 5.1 38 4-41 76-113 (569)
358 PRK12810 gltD glutamate syntha 97.6 0.00071 1.5E-08 64.6 11.9 110 4-142 282-402 (471)
359 PLN02612 phytoene desaturase 97.6 8.2E-05 1.8E-09 72.5 5.5 38 3-40 93-130 (567)
360 PRK06834 hypothetical protein; 97.6 0.00023 5E-09 68.1 8.3 147 169-317 3-159 (488)
361 COG1206 Gid NAD(FAD)-utilizing 97.6 0.00027 5.8E-09 61.5 7.6 37 1-37 1-37 (439)
362 PF00732 GMC_oxred_N: GMC oxid 97.6 6.7E-05 1.4E-09 67.1 4.2 34 4-37 1-35 (296)
363 PF01134 GIDA: Glucose inhibit 97.6 0.00024 5.3E-09 64.7 7.7 133 171-312 1-150 (392)
364 TIGR01318 gltD_gamma_fam gluta 97.6 0.0013 2.9E-08 62.6 12.8 101 4-142 283-400 (467)
365 TIGR01372 soxA sarcosine oxida 97.6 0.00071 1.5E-08 70.4 11.8 96 4-143 318-414 (985)
366 PF07992 Pyr_redox_2: Pyridine 97.5 9.1E-05 2E-09 62.0 4.3 32 171-202 1-32 (201)
367 PLN03000 amine oxidase 97.5 0.00016 3.4E-09 72.3 5.8 40 3-42 184-223 (881)
368 PRK12769 putative oxidoreducta 97.5 0.0016 3.5E-08 64.9 12.9 102 4-142 469-586 (654)
369 PF06100 Strep_67kDa_ant: Stre 97.5 0.0013 2.8E-08 61.1 11.1 38 3-40 2-43 (500)
370 PRK12814 putative NADPH-depend 97.5 0.0036 7.9E-08 62.2 15.1 101 4-143 324-440 (652)
371 PRK12779 putative bifunctional 97.5 0.00021 4.5E-09 73.4 6.5 101 168-315 305-406 (944)
372 KOG1276 Protoporphyrinogen oxi 97.5 0.00016 3.4E-09 65.1 4.7 39 4-42 12-52 (491)
373 PF13738 Pyr_redox_3: Pyridine 97.5 8.3E-05 1.8E-09 62.4 2.9 30 173-202 1-31 (203)
374 PLN02852 ferredoxin-NADP+ redu 97.4 0.00021 4.5E-09 67.8 5.6 35 168-202 25-61 (491)
375 KOG2665 Predicted FAD-dependen 97.4 0.0012 2.6E-08 57.2 9.4 36 3-38 48-85 (453)
376 PLN02976 amine oxidase 97.4 0.00019 4.1E-09 74.6 5.2 41 4-44 694-734 (1713)
377 PRK08773 2-octaprenyl-3-methyl 97.3 0.00075 1.6E-08 63.0 7.5 146 169-317 6-172 (392)
378 PRK01438 murD UDP-N-acetylmura 97.3 0.00061 1.3E-08 65.4 6.9 35 168-202 15-49 (480)
379 PRK05868 hypothetical protein; 97.3 0.0012 2.5E-08 61.2 8.4 33 170-202 2-34 (372)
380 PRK09853 putative selenate red 97.3 0.0028 6.1E-08 64.8 11.5 100 4-143 669-782 (1019)
381 PRK05192 tRNA uridine 5-carbox 97.3 0.00074 1.6E-08 65.2 7.0 33 170-202 5-37 (618)
382 TIGR01790 carotene-cycl lycope 97.3 0.00089 1.9E-08 62.4 7.5 135 171-314 1-141 (388)
383 PRK02106 choline dehydrogenase 97.2 0.00035 7.5E-09 68.3 4.9 34 3-36 5-39 (560)
384 COG0492 TrxB Thioredoxin reduc 97.2 0.004 8.6E-08 55.5 11.0 96 4-142 144-240 (305)
385 COG0654 UbiH 2-polyprenyl-6-me 97.2 0.00048 1E-08 64.1 5.4 146 169-315 2-163 (387)
386 TIGR01789 lycopene_cycl lycope 97.2 0.00084 1.8E-08 61.9 6.9 32 171-202 1-34 (370)
387 PRK08163 salicylate hydroxylas 97.2 0.00065 1.4E-08 63.5 6.1 34 169-202 4-37 (396)
388 PRK08244 hypothetical protein; 97.2 0.0011 2.4E-08 63.8 7.7 33 170-202 3-35 (493)
389 PRK07608 ubiquinone biosynthes 97.2 0.00081 1.8E-08 62.6 6.6 33 170-202 6-38 (388)
390 TIGR02032 GG-red-SF geranylger 97.2 0.0008 1.7E-08 60.0 5.9 32 171-202 2-33 (295)
391 PRK05714 2-octaprenyl-3-methyl 97.1 0.0016 3.5E-08 61.0 8.2 33 170-202 3-35 (405)
392 PRK07236 hypothetical protein; 97.1 0.0021 4.6E-08 59.8 8.9 35 168-202 5-39 (386)
393 PRK12809 putative oxidoreducta 97.1 0.022 4.8E-07 56.6 16.3 101 4-142 452-569 (639)
394 PRK06184 hypothetical protein; 97.1 0.002 4.4E-08 62.1 8.7 34 169-202 3-36 (502)
395 KOG0405 Pyridine nucleotide-di 97.1 0.0022 4.7E-08 56.4 7.8 104 3-145 189-292 (478)
396 PLN02172 flavin-containing mon 97.1 0.0013 2.7E-08 62.5 7.0 33 4-36 205-237 (461)
397 PF05834 Lycopene_cycl: Lycope 97.1 0.00083 1.8E-08 62.1 5.4 136 171-315 1-143 (374)
398 TIGR03862 flavo_PP4765 unchara 97.1 0.004 8.6E-08 57.0 9.7 57 75-139 84-140 (376)
399 PRK09126 hypothetical protein; 97.1 0.0017 3.8E-08 60.5 7.5 33 170-202 4-36 (392)
400 PRK07333 2-octaprenyl-6-methox 97.1 0.0021 4.5E-08 60.3 7.9 144 171-317 3-170 (403)
401 TIGR01988 Ubi-OHases Ubiquinon 97.1 0.0018 3.9E-08 60.2 7.5 32 171-202 1-32 (385)
402 PRK12775 putative trifunctiona 97.1 0.0088 1.9E-07 62.3 13.0 100 4-142 572-688 (1006)
403 PRK06567 putative bifunctional 97.0 0.0013 2.9E-08 66.4 6.6 36 167-202 381-416 (1028)
404 TIGR01984 UbiH 2-polyprenyl-6- 97.0 0.0016 3.4E-08 60.6 6.8 141 171-315 1-163 (382)
405 PRK14106 murD UDP-N-acetylmura 97.0 0.0011 2.3E-08 63.2 5.6 35 2-36 4-38 (450)
406 PRK06753 hypothetical protein; 97.0 0.0025 5.4E-08 59.0 7.8 32 171-202 2-33 (373)
407 TIGR01317 GOGAT_sm_gam glutama 97.0 0.018 3.9E-07 55.2 13.7 33 4-36 284-317 (485)
408 TIGR03315 Se_ygfK putative sel 97.0 0.013 2.8E-07 60.4 13.1 99 4-143 667-779 (1012)
409 PRK08013 oxidoreductase; Provi 97.0 0.0027 5.9E-08 59.4 7.7 34 170-203 4-37 (400)
410 PRK02705 murD UDP-N-acetylmura 97.0 0.0012 2.6E-08 63.0 5.4 32 5-36 2-33 (459)
411 KOG4716 Thioredoxin reductase 97.0 0.002 4.4E-08 56.4 6.1 107 4-145 199-305 (503)
412 COG1251 NirB NAD(P)H-nitrite r 96.9 0.0015 3.3E-08 63.0 5.9 100 4-142 146-245 (793)
413 PRK07588 hypothetical protein; 96.9 0.0021 4.5E-08 60.0 6.7 32 171-202 2-33 (391)
414 TIGR00275 flavoprotein, HI0933 96.9 0.0022 4.7E-08 59.9 6.7 138 173-314 1-160 (400)
415 PRK07190 hypothetical protein; 96.9 0.0041 8.9E-08 59.6 8.6 33 170-202 6-38 (487)
416 PTZ00188 adrenodoxin reductase 96.9 0.0016 3.6E-08 61.1 5.7 36 168-203 38-74 (506)
417 PF00743 FMO-like: Flavin-bind 96.9 0.0026 5.6E-08 61.3 6.9 34 3-36 183-216 (531)
418 PRK08020 ubiF 2-octaprenyl-3-m 96.9 0.0032 6.9E-08 58.7 7.4 33 170-202 6-38 (391)
419 PRK09897 hypothetical protein; 96.9 0.0052 1.1E-07 59.1 8.8 33 170-202 2-36 (534)
420 PRK10157 putative oxidoreducta 96.9 0.0019 4.2E-08 60.9 5.9 33 170-202 6-38 (428)
421 PF13454 NAD_binding_9: FAD-NA 96.8 0.0061 1.3E-07 48.7 7.6 30 173-202 1-35 (156)
422 PLN00093 geranylgeranyl diphos 96.8 0.011 2.4E-07 56.0 10.5 35 168-202 38-72 (450)
423 PRK08849 2-octaprenyl-3-methyl 96.8 0.0041 8.8E-08 57.9 7.3 33 170-202 4-36 (384)
424 TIGR02028 ChlP geranylgeranyl 96.8 0.0041 8.8E-08 58.1 7.3 32 171-202 2-33 (398)
425 PRK13984 putative oxidoreducta 96.8 0.067 1.5E-06 53.0 16.0 101 4-143 419-541 (604)
426 PF12831 FAD_oxidored: FAD dep 96.7 0.00079 1.7E-08 63.5 2.2 32 171-202 1-32 (428)
427 PLN02785 Protein HOTHEAD 96.7 0.0018 4E-08 63.2 4.8 33 3-36 55-87 (587)
428 COG2303 BetA Choline dehydroge 96.7 0.0016 3.5E-08 63.1 4.2 34 3-36 7-40 (542)
429 TIGR01810 betA choline dehydro 96.7 0.0015 3.2E-08 63.5 4.0 32 5-36 1-33 (532)
430 PRK05329 anaerobic glycerol-3- 96.7 0.014 3.1E-07 54.5 10.2 93 7-139 219-317 (422)
431 PRK08850 2-octaprenyl-6-methox 96.7 0.01 2.3E-07 55.6 9.5 33 169-201 4-36 (405)
432 COG2072 TrkA Predicted flavopr 96.7 0.0082 1.8E-07 56.7 8.6 35 168-202 7-42 (443)
433 PRK06617 2-octaprenyl-6-methox 96.6 0.0061 1.3E-07 56.5 7.4 32 171-202 3-34 (374)
434 PLN02697 lycopene epsilon cycl 96.6 0.0015 3.3E-08 62.7 3.4 135 169-314 108-248 (529)
435 PRK07494 2-octaprenyl-6-methox 96.6 0.012 2.6E-07 54.8 9.2 33 170-202 8-40 (388)
436 TIGR00136 gidA glucose-inhibit 96.6 0.006 1.3E-07 59.0 7.2 32 171-202 2-33 (617)
437 PRK10015 oxidoreductase; Provi 96.6 0.0029 6.4E-08 59.6 5.0 33 170-202 6-38 (429)
438 COG0644 FixC Dehydrogenases (f 96.6 0.0036 7.8E-08 58.5 5.5 34 170-203 4-37 (396)
439 PRK11728 hydroxyglutarate oxid 96.6 0.0066 1.4E-07 56.7 7.1 33 170-202 3-37 (393)
440 PRK07045 putative monooxygenas 96.6 0.0085 1.8E-07 55.8 7.8 34 170-203 6-39 (388)
441 PRK06475 salicylate hydroxylas 96.5 0.0055 1.2E-07 57.4 6.4 33 170-202 3-35 (400)
442 TIGR03219 salicylate_mono sali 96.5 0.0077 1.7E-07 56.7 7.3 32 171-202 2-34 (414)
443 PRK07364 2-octaprenyl-6-methox 96.5 0.015 3.2E-07 54.7 9.0 34 169-202 18-51 (415)
444 KOG4254 Phytoene desaturase [C 96.5 0.0027 5.8E-08 57.8 3.6 38 3-40 14-51 (561)
445 PRK06183 mhpA 3-(3-hydroxyphen 96.4 0.015 3.2E-07 56.8 8.9 34 169-202 10-43 (538)
446 PRK12771 putative glutamate sy 96.4 0.067 1.5E-06 52.5 13.5 100 4-142 268-382 (564)
447 TIGR01989 COQ6 Ubiquinone bios 96.4 0.011 2.4E-07 56.0 7.8 32 171-202 2-37 (437)
448 COG4529 Uncharacterized protei 96.4 0.02 4.4E-07 53.1 8.9 33 170-202 2-37 (474)
449 COG3634 AhpF Alkyl hydroperoxi 96.4 0.023 5E-07 50.2 8.8 105 3-147 354-459 (520)
450 TIGR02023 BchP-ChlP geranylger 96.3 0.012 2.6E-07 54.8 7.4 31 171-201 2-32 (388)
451 KOG1399 Flavin-containing mono 96.3 0.038 8.1E-07 51.9 10.4 35 168-202 5-39 (448)
452 PF13450 NAD_binding_8: NAD(P) 96.3 0.0043 9.3E-08 41.7 3.0 29 174-202 1-29 (68)
453 PF01494 FAD_binding_3: FAD bi 96.3 0.0016 3.5E-08 59.6 1.2 32 171-202 3-34 (356)
454 PRK06126 hypothetical protein; 96.3 0.018 4E-07 56.2 8.5 34 169-202 7-40 (545)
455 PF04820 Trp_halogenase: Trypt 96.2 0.0051 1.1E-07 58.4 4.4 52 265-316 155-213 (454)
456 KOG2755 Oxidoreductase [Genera 96.2 0.0092 2E-07 50.5 5.1 31 172-202 2-34 (334)
457 PRK08243 4-hydroxybenzoate 3-m 96.1 0.02 4.4E-07 53.4 7.7 33 170-202 3-35 (392)
458 PRK05732 2-octaprenyl-6-methox 96.1 0.019 4.2E-07 53.6 7.5 32 170-201 4-38 (395)
459 PRK08401 L-aspartate oxidase; 96.1 0.061 1.3E-06 51.4 10.8 33 170-202 2-34 (466)
460 KOG1238 Glucose dehydrogenase/ 96.0 0.0067 1.4E-07 58.1 3.9 36 3-38 57-93 (623)
461 PF13241 NAD_binding_7: Putati 96.0 0.0063 1.4E-07 44.8 2.9 35 2-36 6-40 (103)
462 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.0089 1.9E-07 49.0 4.1 32 5-36 1-32 (180)
463 PF00996 GDI: GDP dissociation 96.0 0.011 2.3E-07 55.2 5.1 44 1-44 2-45 (438)
464 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0075 1.6E-07 48.3 3.6 32 5-36 1-32 (157)
465 TIGR01470 cysG_Nterm siroheme 96.0 0.016 3.4E-07 48.5 5.6 36 167-202 7-42 (205)
466 PLN02927 antheraxanthin epoxid 96.0 0.038 8.2E-07 54.5 8.9 35 168-202 80-114 (668)
467 TIGR02360 pbenz_hydroxyl 4-hyd 95.9 0.023 5.1E-07 52.9 7.2 34 169-202 2-35 (390)
468 PRK06996 hypothetical protein; 95.9 0.015 3.3E-07 54.4 5.9 34 169-202 11-48 (398)
469 PRK06185 hypothetical protein; 95.9 0.018 4E-07 54.0 6.5 34 169-202 6-39 (407)
470 COG1148 HdrA Heterodisulfide r 95.9 0.016 3.6E-07 53.4 5.7 35 168-202 123-157 (622)
471 TIGR01470 cysG_Nterm siroheme 95.9 0.014 3.1E-07 48.8 5.0 35 2-36 8-42 (205)
472 PRK07538 hypothetical protein; 95.9 0.027 5.9E-07 52.9 7.5 32 171-202 2-33 (413)
473 PRK08132 FAD-dependent oxidore 95.9 0.015 3.3E-07 56.8 5.9 35 168-202 22-56 (547)
474 PRK06719 precorrin-2 dehydroge 95.9 0.014 3.1E-07 46.5 4.6 33 3-35 13-45 (157)
475 COG0445 GidA Flavin-dependent 95.8 0.021 4.5E-07 53.7 6.2 33 170-202 5-37 (621)
476 COG0579 Predicted dehydrogenas 95.8 0.022 4.8E-07 52.8 6.2 33 170-202 4-38 (429)
477 KOG3851 Sulfide:quinone oxidor 95.8 0.018 4E-07 50.2 5.1 33 285-317 114-148 (446)
478 PRK06481 fumarate reductase fl 95.7 0.082 1.8E-06 51.1 10.2 34 169-202 61-94 (506)
479 COG0569 TrkA K+ transport syst 95.7 0.014 3E-07 49.7 4.4 33 4-36 1-33 (225)
480 KOG2311 NAD/FAD-utilizing prot 95.7 0.051 1.1E-06 50.2 8.0 33 169-201 28-60 (679)
481 PF01488 Shikimate_DH: Shikima 95.7 0.023 4.9E-07 44.2 5.2 34 3-36 12-46 (135)
482 PF03721 UDPG_MGDP_dh_N: UDP-g 95.6 0.011 2.4E-07 48.6 3.3 32 5-36 2-33 (185)
483 KOG0399 Glutamate synthase [Am 95.6 0.027 5.8E-07 57.2 6.0 35 168-202 1784-1818(2142)
484 PRK06718 precorrin-2 dehydroge 95.5 0.023 5E-07 47.5 4.8 34 2-35 9-42 (202)
485 KOG2820 FAD-dependent oxidored 95.5 0.079 1.7E-06 46.8 8.0 34 169-202 7-40 (399)
486 PRK05335 tRNA (uracil-5-)-meth 95.4 0.015 3.2E-07 53.9 3.7 33 170-202 3-35 (436)
487 KOG0404 Thioredoxin reductase 95.4 0.07 1.5E-06 44.3 7.0 104 4-147 158-262 (322)
488 PRK07530 3-hydroxybutyryl-CoA 95.3 0.026 5.7E-07 50.3 4.9 35 2-36 3-37 (292)
489 PRK08293 3-hydroxybutyryl-CoA 95.3 0.029 6.2E-07 49.9 4.9 36 1-36 1-36 (287)
490 COG0493 GltD NADPH-dependent g 95.2 0.023 4.9E-07 53.6 4.3 37 166-202 120-156 (457)
491 PRK07819 3-hydroxybutyryl-CoA 95.2 0.025 5.4E-07 50.2 4.3 33 4-36 6-38 (286)
492 COG3380 Predicted NAD/FAD-depe 95.2 0.091 2E-06 45.1 7.2 33 170-202 2-34 (331)
493 PRK11064 wecC UDP-N-acetyl-D-m 95.2 0.025 5.3E-07 53.1 4.3 36 1-36 1-36 (415)
494 PF02558 ApbA: Ketopantoate re 95.1 0.015 3.3E-07 46.1 2.5 72 172-310 1-75 (151)
495 PRK08255 salicylyl-CoA 5-hydro 95.1 0.041 9E-07 55.9 6.1 32 171-202 2-35 (765)
496 KOG1800 Ferredoxin/adrenodoxin 95.1 0.065 1.4E-06 48.1 6.4 35 169-203 20-56 (468)
497 PRK05562 precorrin-2 dehydroge 95.1 0.055 1.2E-06 45.6 5.7 71 168-311 24-94 (223)
498 PF13241 NAD_binding_7: Putati 95.0 0.023 4.9E-07 41.8 2.9 36 166-201 4-39 (103)
499 TIGR00137 gid_trmFO tRNA:m(5)U 95.0 0.022 4.8E-07 53.0 3.5 32 171-202 2-33 (433)
500 TIGR03197 MnmC_Cterm tRNA U-34 95.0 0.052 1.1E-06 50.4 6.1 58 74-139 132-189 (381)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=5.1e-44 Score=337.28 Aligned_cols=359 Identities=30% Similarity=0.475 Sum_probs=217.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC---------CCCCCeeeecCCcccccCCCCCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK---------RAYDRMKLHLAKQFCELPHMPFPSRTPTFV 74 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (381)
++|+|||||++|+++|..|.+.|++++++|+++.+||.|+. ..|+.+..+.+..++.++++|+|.+++.++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999999999974 358889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCc--cccccEEEEEEEeCC---CCeEEEEEeecCCCceEEEEeCEEEEccCCC--CCCCC--C
Q 035902 75 PRISFINYVDNYVSQMGIN--PRYHRSVESASYDEN---AKAWIIVAKNTALDAYEEYVARYLVVATGEN--GLIPE--V 145 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--~~~~~--~ 145 (381)
+..++.+|++.+++++++. ++++++|.++++..+ .+.|.|++.++ +..++-.+|+||+|||.. |..|. +
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~--g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND--GKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT--TEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC--CeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 9999999999999999874 689999999988653 25799987542 234556799999999987 88885 8
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH---HHHHH------
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV---FAGML------ 216 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~---~~~~~------ 216 (381)
||++.|+|.++|+.+|.+...+.+|+|+|||+|.||+|+|..++..+++|++..|++.|++|+... .....
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~ 239 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFS 239 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------------------------
T ss_pred hhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998653 11111
Q ss_pred --HHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEE
Q 035902 217 --LLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVE 294 (381)
Q Consensus 217 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~ 294 (381)
+.+.++..+..++........+ +....++. |. .......|.+++++.+.+..++|++..+|.+++++++.
T Consensus 240 ~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~------~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~ 311 (531)
T PF00743_consen 240 SFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PK------HRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVI 311 (531)
T ss_dssp -------------------------------------------------------------------EE-EEEE-SSEEE
T ss_pred cccccccccccccccccccccccc-cccccccc-cc------cccccccccccccccccccccccccccccccccccccc
Confidence 1111221111111110000000 11222221 11 12234567889999999999999988779999999999
Q ss_pred EcCCcEe-eccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCC-C--CCCcEEEEeccccc--c-cCccHHHHH
Q 035902 295 FENGKIE-EFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHW-K--GENGLYCAGFSRTG--L-HGISIDAKN 367 (381)
Q Consensus 295 ~~~g~~~-~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~ifa~Gd~~~~--~-~~a~~~a~~ 367 (381)
++||+++ ++|.||+|||++.++++ +. + ..+-..++.+... .... . ..|++.++|-+... . ..+..||+.
T Consensus 312 F~DGs~~e~vD~II~~TGY~~~fpF-L~-~-~~~~~~~~~~~LY-k~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw 387 (531)
T PF00743_consen 312 FEDGSTEEDVDVIIFCTGYKFSFPF-LD-E-SLIKVDDNRVRLY-KHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARW 387 (531)
T ss_dssp ETTSEEEEE-SEEEE---EE---TT-B--T-TTT-S-SSSSSEE-TTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc-cc-c-ccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 9999875 69999999999999864 44 3 2121122222211 1111 1 34899999987532 2 278899999
Q ss_pred HHHHhhhcc
Q 035902 368 IANDINLAL 376 (381)
Q Consensus 368 ~a~~i~~~l 376 (381)
+|+-+.+.+
T Consensus 388 ~a~v~sG~~ 396 (531)
T PF00743_consen 388 AARVFSGRV 396 (531)
T ss_dssp HHHHHTTSS
T ss_pred ccccccccc
Confidence 998887754
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.3e-39 Score=296.43 Aligned_cols=305 Identities=22% Similarity=0.300 Sum_probs=222.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCCe-eeecCCcccccCCCC--C-------CCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDRM-KLHLAKQFCELPHMP--F-------PSR 69 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~-~~~~~~~~~~~~~~~--~-------~~~ 69 (381)
|.+||++|||+||+|..+|..+++.|.++.++|+...+|| +.+..+.+.- .+.....+..+.... + ..+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 3469999999999999999999999999999999976777 4555554432 222111111111110 0 111
Q ss_pred CCCCCC-HHH----HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 70 TPTFVP-RIS----FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 70 ~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.... .+. +....+.++++.+++++.+. . .+.+ .+. |..... +.+.++++++|||||++|..|+
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a---~f~~-~~~--v~V~~~---~~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-A---RFVD-PHT--VEVTGE---DKETITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-E---EECC-CCE--EEEcCC---CceEEEeCEEEEcCCCCCcCCC
Confidence 111111 111 22233445555566654432 1 1221 133 444432 2378999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+++++.. .++.+.+..... ..|++++|||||.+|+|+|..++++|.+||++.|.+ .++|.++.+++..+.+.|
T Consensus 152 ~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~ei~~~~~~~l--- 224 (454)
T COG1249 152 GPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPEISKELTKQL--- 224 (454)
T ss_pred CCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHHHHHHHHHHH---
Confidence 8888753 255565655555 479999999999999999999999999999999999 999999998888877665
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENG 298 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g 298 (381)
++++++++.+ ++.++.+ .+.+++|
T Consensus 225 --------------------------------------------------~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g 254 (454)
T COG1249 225 --------------------------------------------------EKGGVKILLNTKVTAVEKKDDGVLVTLEDG 254 (454)
T ss_pred --------------------------------------------------HhCCeEEEccceEEEEEecCCeEEEEEecC
Confidence 4466777777 6666543 3666777
Q ss_pred c--EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 299 K--IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 299 ~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+ ++++|.+++|+|++||++.+.. ++.|+ ++++|++.+| ..+.|+.|||||+||++++++ .|.+||+.++++|
T Consensus 255 ~~~~~~ad~vLvAiGR~Pn~~~LgL-e~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i 332 (454)
T COG1249 255 EGGTIEADAVLVAIGRKPNTDGLGL-ENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENI 332 (454)
T ss_pred CCCEEEeeEEEEccCCccCCCCCCh-hhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHH
Confidence 6 7899999999999999987765 66888 8888999999 566677899999999988876 9999999999999
Q ss_pred hh
Q 035902 373 NL 374 (381)
Q Consensus 373 ~~ 374 (381)
.+
T Consensus 333 ~g 334 (454)
T COG1249 333 AG 334 (454)
T ss_pred hC
Confidence 97
No 3
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=5.2e-38 Score=293.09 Aligned_cols=306 Identities=22% Similarity=0.378 Sum_probs=232.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------------------CCCCeeeecCCcccccC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR--------------------AYDRMKLHLAKQFCELP 62 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~ 62 (381)
.++|+|||||++|++||.+|++.|.+++|+|+++.+||.|... .|..+..+.+...+.++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 4899999999999999999999999999999999999999642 35566677777777888
Q ss_pred CCCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCc--cccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 63 HMPFPSR-------TPTFVPRISFINYVDNYVSQMGIN--PRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 63 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
.+|++.. .+.+++..++.+|++.+++++++. ++++++|++++..+ +.|.|++.++. +...+..||+||
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~-~~~~~~~~d~VI 166 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSG-GFSKDEIFDAVV 166 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCC-CceEEEEcCEEE
Confidence 8776542 245888999999999999999987 78999999998865 78999887542 122357899999
Q ss_pred EccCC--CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH
Q 035902 134 VATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV 211 (381)
Q Consensus 134 lAtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~ 211 (381)
+|||. .|+.|.+||++.++|..+|+..+.....+.+|+|+|||+|.+|+|+|..|+..+++|++++|++. +...
T Consensus 167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~-~~~~--- 242 (461)
T PLN02172 167 VCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE-SDTY--- 242 (461)
T ss_pred EeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc-cccc---
Confidence 99994 59999999999999999999999988888999999999999999999999999999999999762 1000
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeC-
Q 035902 212 FAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINR- 290 (381)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~- 290 (381)
. + +. ....++.+...|..+.+
T Consensus 243 -------~-----------------------~--~~--------------------------~~~~~v~~~~~I~~~~~~ 264 (461)
T PLN02172 243 -------E-----------------------K--LP--------------------------VPQNNLWMHSEIDTAHED 264 (461)
T ss_pred -------c-----------------------c--Cc--------------------------CCCCceEECCcccceecC
Confidence 0 0 00 01122222222444433
Q ss_pred CeEEEcCCcEeeccEEEEecCCCCCcchhccccCCccc-ccCCCCC-CCCCCCCCC-CCcEEEEecccccc--cCccHHH
Q 035902 291 NEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDFF-DEYGMPK-RNCPNHWKG-ENGLYCAGFSRTGL--HGISIDA 365 (381)
Q Consensus 291 ~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~-~~~ifa~Gd~~~~~--~~a~~~a 365 (381)
+.|.+.||+++++|.||+|||+++++++ +. . .+.+ ..++.+. .-..-.... .|+++++|-..... ..+..||
T Consensus 265 g~V~f~DG~~~~~D~Ii~~TGy~~~~pf-L~-~-~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa 341 (461)
T PLN02172 265 GSIVFKNGKVVYADTIVHCTGYKYHFPF-LE-T-NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQS 341 (461)
T ss_pred CeEEECCCCCccCCEEEECCcCCccccc-cC-c-ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHH
Confidence 4689999999999999999999999964 43 3 3322 1122221 110011123 38999999764332 2788899
Q ss_pred HHHHHHhhhcc
Q 035902 366 KNIANDINLAL 376 (381)
Q Consensus 366 ~~~a~~i~~~l 376 (381)
+.+|+-+.+.+
T Consensus 342 ~~~a~v~sG~~ 352 (461)
T PLN02172 342 KWVAAVLSGRV 352 (461)
T ss_pred HHHHHHHcCCC
Confidence 99998887654
No 4
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=270.71 Aligned_cols=289 Identities=21% Similarity=0.274 Sum_probs=226.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (381)
|+.+||+||||||||++||.++.+.+++ ++|+|+ ...|+..... ....+++. ++.-.+..++
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~----------~~venypg------~~~~~~g~~L 63 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKT----------TDVENYPG------FPGGILGPEL 63 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccc----------eeecCCCC------CccCCchHHH
Confidence 6779999999999999999999999999 555554 4444322111 01112222 2334567788
Q ss_pred HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecC
Q 035902 80 INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~ 159 (381)
.+.+++.+..+++++.. ..|.+++... ..|.|.+.++ . +++++||+|||..++.|.+||..++.++-+++|
T Consensus 64 ~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~~-----~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc 134 (305)
T COG0492 64 MEQMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDKG-----T-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYC 134 (305)
T ss_pred HHHHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECCC-----e-EEEeEEEECcCCcccCCCCCcchhhcCCceEEe
Confidence 99899999988888665 6677776654 2788998886 4 999999999999999999888778889999999
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 160 KYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 160 ~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
..++. .+.+++++|||||.+|+|.|..|++.+++|++++|++ .+-+.
T Consensus 135 ~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~-~~ra~------------------------------- 181 (305)
T COG0492 135 ATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD-EFRAE------------------------------- 181 (305)
T ss_pred eecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc-ccCcC-------------------------------
Confidence 99998 7889999999999999999999999999999999999 33221
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCC-CeEEccC--cceEeCC---eEEEcCC----cEeeccEEEEe
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKG-EIQVFPS--ITSINRN---EVEFENG----KIEEFEAIIFA 309 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~v~~~---~v~~~~g----~~~~~D~vi~a 309 (381)
+...+.+++. ++.++.+ +.++.++ ++.+.+. +.+++|-++.+
T Consensus 182 ----------------------------~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~ 233 (305)
T COG0492 182 ----------------------------EILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIA 233 (305)
T ss_pred ----------------------------HHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEe
Confidence 1113334433 7888777 8888874 6777663 27899999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccCC
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~~ 380 (381)
+|..|+..++.. .+.++++|++.++ +.+.|+.|+|||+||+..... .|..+|..+|.++.++|...+
T Consensus 234 iG~~p~~~~~~~---~~~~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~~ 304 (305)
T COG0492 234 IGHLPNTELLKG---LGVLDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESLA 304 (305)
T ss_pred cCCCCchHHHhh---ccccCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhcc
Confidence 999999954433 5558999999999 458899999999999987653 899999999999999887653
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.2e-36 Score=273.30 Aligned_cols=284 Identities=21% Similarity=0.307 Sum_probs=211.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
|||+|||||++|+++|..|++.|.+|+|||+++ .||.|.... .+..++.+ +......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 689999999999999999999999999999886 555433210 01111111 1223456888999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYEN 163 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (381)
++.++++++++++ ++|.+++..+ +.|.+.+.++ ..+.||+||+|||+.|..|.+||.+.+.+...+.+....
T Consensus 64 ~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~~-----~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~ 135 (300)
T TIGR01292 64 KEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGDG-----KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD 135 (300)
T ss_pred HHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCCC-----CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC
Confidence 9999999999888 8899988765 5677877654 579999999999999998889987665444454444444
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccc
Q 035902 164 GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFK 243 (381)
Q Consensus 164 ~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.....+++++|||+|.+|+|+|..+++.+.+|+++.|.+. +...
T Consensus 136 ~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~-~~~~----------------------------------- 179 (300)
T TIGR01292 136 GPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK-FRAE----------------------------------- 179 (300)
T ss_pred hhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc-cCcC-----------------------------------
Confidence 3445689999999999999999999999999999999872 2110
Q ss_pred cCCCCCCCCCcccccccCCCccccchhhhhhcCC-CeEEccC--cceEeCC----eEEEc---C--CcEeeccEEEEecC
Q 035902 244 YGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKG-EIQVFPS--ITSINRN----EVEFE---N--GKIEEFEAIIFATG 311 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~v~~~----~v~~~---~--g~~~~~D~vi~a~G 311 (381)
....+.+++. +++++.+ +.+++++ .+.+. + ++++++|.+++|+|
T Consensus 180 ------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 180 ------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred ------------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 0013334444 7888766 7777654 24442 2 35799999999999
Q ss_pred CCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccc-cc---cCccHHHHHHHHHhhhcc
Q 035902 312 YKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRT-GL---HGISIDAKNIANDINLAL 376 (381)
Q Consensus 312 ~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-~~---~~a~~~a~~~a~~i~~~l 376 (381)
++|+.+ ++. . ..-++++|++.++ +.+.++.||||++|||.+ .+ ..|+.||+.+|.+|...|
T Consensus 236 ~~~~~~-~l~-~-~~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 236 HEPNTE-LLK-G-LLELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCChH-HHH-H-hheecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 999985 444 3 2225778999998 457789999999999987 22 289999999999998764
No 6
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.6e-36 Score=270.03 Aligned_cols=290 Identities=16% Similarity=0.227 Sum_probs=214.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+||||||||++||..|+++|.++++||.. ..||.+... ...+.++.. +...+..++.++
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~~------~~~~~~~~~~~~ 68 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPGD------PNDLTGPLLMER 68 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCCC------CCCCCHHHHHHH
Confidence 589999999999999999999999999999965 456543221 011111111 223456678888
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+....++.+++.+ ++..++..+ +.|.+.... ..+.||+||+|||+.|+.|++||.+.+.+..++.+...
T Consensus 69 ~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~------~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~ 139 (321)
T PRK10262 69 MHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDS------GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATC 139 (321)
T ss_pred HHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecC------CEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecC
Confidence 888888887766554 566777654 667665432 35899999999999999999999776666667777666
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|++.+++|++++|++ .+ +. ...+.
T Consensus 140 ~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~-~~-~~-~~~~~---------------------------- 188 (321)
T PRK10262 140 DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD-GF-RA-EKILI---------------------------- 188 (321)
T ss_pred CHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC-cc-CC-CHHHH----------------------------
Confidence 6656679999999999999999999999999999999987 22 11 11111
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcCC------cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFENG------KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~g------~~~~~D~vi~a 309 (381)
....+.+++.+|+++.+ ++++.++ .+.+.++ +++++|.|+++
T Consensus 189 -------------------------~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a 243 (321)
T PRK10262 189 -------------------------KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVA 243 (321)
T ss_pred -------------------------HHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEE
Confidence 11244567788998887 8888765 3555432 47999999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCC----CCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNC----PNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|++|+... +. . ++-.++|++.++. +.+.|+.|||||+|||++... .|+.+|..+|..|+++|+.
T Consensus 244 ~G~~p~~~l-~~-~--~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 244 IGHSPNTAI-FE-G--QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred eCCccChhH-hh-c--cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHh
Confidence 999999863 33 2 2322457787772 145689999999999986432 8999999999999998854
No 7
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=3.3e-36 Score=282.76 Aligned_cols=298 Identities=15% Similarity=0.225 Sum_probs=204.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCe-eeecCC------c--ccccCCC-CCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRM-KLHLAK------Q--FCELPHM-PFPSRT 70 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~-~~~~~~------~--~~~~~~~-~~~~~~ 70 (381)
++|||+||||||+|++||..+++.|.+|+|||+. .+||.+ +..+.+.- ...... . .+++... ....++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 4699999999999999999999999999999996 477743 33333321 111000 0 0011100 000111
Q ss_pred CCCCC-HHHHH----HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC-C
Q 035902 71 PTFVP-RISFI----NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP-E 144 (381)
Q Consensus 71 ~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~-~ 144 (381)
+.... ++++. +.+...+++.+++++.++.+. .+ .+. |..+ + ..+.||+||+|||+.|..| .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~--~~~--v~v~-~-----~~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TK--DGT--VEVN-G-----RDYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---cc--CCE--EEEC-C-----EEEEeCEEEEecCCCCCCCCC
Confidence 11111 11222 234444555677777665431 11 233 4442 2 5699999999999999988 7
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||.+. ..++..+.... ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .+++..+.++...+
T Consensus 147 i~g~~~----~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~~~~~~------- 213 (450)
T TIGR01421 147 IPGAEL----GTDSDGFFALE-ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSMISETI------- 213 (450)
T ss_pred CCCCce----eEcHHHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHHHHHHH-------
Confidence 888652 12223332222 247999999999999999999999999999999998 66676655544443
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFEN 297 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~ 297 (381)
.+.+++.+|+++.+ ++++..+ .+.+++
T Consensus 214 ----------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~ 247 (450)
T TIGR01421 214 ----------------------------------------------TEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED 247 (450)
T ss_pred ----------------------------------------------HHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECC
Confidence 33346678888887 7777542 355667
Q ss_pred C-cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 298 G-KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 298 g-~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+ +.+++|.|++++|++||++.+.. +..++ ++++|++.+| +.++|+.|||||+|||.+.+. .|..||+.+|++|
T Consensus 248 g~~~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i 325 (450)
T TIGR01421 248 GKSIDDVDELIWAIGRKPNTKGLGL-ENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERL 325 (450)
T ss_pred CcEEEEcCEEEEeeCCCcCcccCCc-cccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHH
Confidence 7 57999999999999999975433 43666 7888999999 567789999999999987655 8899999999999
Q ss_pred hh
Q 035902 373 NL 374 (381)
Q Consensus 373 ~~ 374 (381)
.+
T Consensus 326 ~~ 327 (450)
T TIGR01421 326 FN 327 (450)
T ss_pred hc
Confidence 85
No 8
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-35 Score=271.96 Aligned_cols=350 Identities=26% Similarity=0.418 Sum_probs=251.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
+++||+|||||++|+++|++|.+.|.. ++|+|+++.+||.|+..+|+.+.++.+...+.++.++++ +...++...++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~ 85 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIK 85 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccHH
Confidence 468999999999999999999999998 999999999999999999999999999999999999986 334455666677
Q ss_pred HHHHHHHHHhCCc--cccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC--CCCCCCCCCCCCCccee
Q 035902 81 NYVDNYVSQMGIN--PRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYM 156 (381)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--~~~~~~~g~~~~~~~~~ 156 (381)
+|+..++++|++. +.+++.|..++.+++.+.|+|+++++... ++.+|+||+|||.. |.+|.++|.+.|.|.++
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~---~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG---ELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee---eEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 8888888888765 56777888888887778999999987322 27899999999988 99999999999999999
Q ss_pred ecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH----HHHHHHHhhCcHHHHHHHHHH
Q 035902 157 HSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV----FAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 157 ~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~ 232 (381)
|+.++.+..++.+|+|+|||+|.||++++..|++.|++|++++|++.+.+|.... .....+...++..+.......
T Consensus 163 HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
T COG2072 163 HSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRRGRV 242 (443)
T ss_pred chhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCccceehhhhhh
Confidence 9999999999999999999999999999999999999999999999888886652 333333333333222111100
Q ss_pred Hhh---hhh------------cCccccCCCCCCCCCcccc------cccCCCccccchhhhhhcCCCeEEccC-cceEeC
Q 035902 233 LSK---MKF------------GNLFKYGLERPKKGPFYFK------AITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINR 290 (381)
Q Consensus 233 ~~~---~~~------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~ 290 (381)
... .+. ....+..+.+....+.... ....++...+..++......++.+++. ++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (443)
T COG2072 243 LDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDRFTE 322 (443)
T ss_pred hhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcccceeeccccccCC
Confidence 000 000 0000111111001111110 011122344556677778888888888 776666
Q ss_pred CeEEEcCCcEeeccEEEEecCCCCCcchhccccCCccc-cc-C-CCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 291 NEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDFF-DE-Y-GMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 291 ~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~-~~-~-g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
..+...+++.++.|.++.+||+..+.-.... .+.. ++ + .....+......+.||+|.++.-....
T Consensus 323 ~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~ 390 (443)
T COG2072 323 GGILLDSGREEEADVIITATGLDANDLSGAA---GGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKAS 390 (443)
T ss_pred cceecCCCccccceEEEecCCCchhheeeec---cccccccccccccceeccccccCCCceEEecCccCCc
Confidence 7777777777999999999999985211121 2221 11 1 112222234456789999999776553
No 9
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-35 Score=279.32 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=206.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcC-CCCCCCeeeecCCcccccCCCCCCCCCCC-CCCHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWK-KRAYDRMKLHLAKQFCELPHMPFPSRTPT-FVPRI 77 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 77 (381)
|++|||+||||||+|++||..|+++|.+|+|||+.+ .+||.+. ..+.+...+-... . ...++.. ....+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~-------~-~~~~~~~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA-------Q-QHTDFVRAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh-------c-cCCCHHHHHHHHH
Confidence 888999999999999999999999999999999976 4677653 2222211100000 0 0001111 11112
Q ss_pred HHHHHHH-----HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCC
Q 035902 78 SFINYVD-----NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFE 152 (381)
Q Consensus 78 ~~~~~~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~ 152 (381)
++.++++ +..+..+++++.+ ++..++ .+.+.|...++ ...+.||+||+|||+.|..|++||++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~----~~~~~v~~~~g----~~~~~~d~lviATGs~p~~p~i~G~~~~~ 143 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNIDVIDG-QAEFIN----NHSLRVHRPEG----NLEIHGEKIFINTGAQTVVPPIPGITTTP 143 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCcEEEEE-EEEEec----CCEEEEEeCCC----eEEEEeCEEEEcCCCcCCCCCCCCccCCC
Confidence 2333332 1222235555433 343332 24555655443 13699999999999999999999986544
Q ss_pred cceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 153 GEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
+ +++....... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 144 ~-v~~~~~~~~~-~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l--------------- 205 (441)
T PRK08010 144 G-VYDSTGLLNL-KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIADNI--------------- 205 (441)
T ss_pred C-EEChhHhhcc-cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHHHH---------------
Confidence 3 4444333332 3357899999999999999999999999999999988 67776655444333
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEc-CCcEeeccEEE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFE-NGKIEEFEAII 307 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~-~g~~~~~D~vi 307 (381)
.+.+++.+++++.+ +++++.+ .+.+. ++.++++|.++
T Consensus 206 --------------------------------------~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl 247 (441)
T PRK08010 206 --------------------------------------ATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALL 247 (441)
T ss_pred --------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEE
Confidence 33456678888876 7777643 34332 23368999999
Q ss_pred EecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 308 FATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
+|+|.+||+..+.. ...++ ++++|++.+| +.++++.|||||+|||++.+. .|..+|+.++++|.+.
T Consensus 248 ~a~G~~pn~~~l~~-~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 248 IASGRQPATASLHP-ENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred EeecCCcCCCCcCc-hhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 99999999865433 33666 6788999999 567889999999999998755 8889999999999863
No 10
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=8.6e-36 Score=282.41 Aligned_cols=308 Identities=14% Similarity=0.150 Sum_probs=210.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCCeeeec-CCcccccCCCC-C-CCCCCCCCCH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-KRAYDRMKLHL-AKQFCELPHMP-F-PSRTPTFVPR 76 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 76 (381)
|.+|||+||||||+|+.+|..|++.|.+|+|||+...+||.|. ..+.+...+.. ...+..+...+ + ....+...+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 3469999999999999999999999999999999888888654 33333211100 00000000000 0 0000111222
Q ss_pred HHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 77 ISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 77 ~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
.++. +.+++.+++.+++++.+. +..++ .+.+.+...++ +...++||+||+|||+.|..|++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~----~~~~~v~~~~g---~~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD----PHTVEVECPDG---EVETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec----CCEEEEEeCCC---ceEEEEcCEEEEcCCCCCCCCCC
Confidence 3332 234445556677766543 32222 24555655443 22479999999999999988877
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
++... ..++++.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.++...+
T Consensus 155 ~~~~~--~~v~~~~~~~~~-~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~l-------- 222 (461)
T PRK05249 155 VDFDH--PRIYDSDSILSL-DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEISDAL-------- 222 (461)
T ss_pred CCCCC--CeEEcHHHhhch-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHHHHHH--------
Confidence 66543 123444333333 2358999999999999999999999999999999998 67776655544433
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEcCCc
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFENGK 299 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~~g~ 299 (381)
.+.+++.+++++.+ ++++.. ++ +.+.+|+
T Consensus 223 ---------------------------------------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~ 257 (461)
T PRK05249 223 ---------------------------------------------SYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK 257 (461)
T ss_pred ---------------------------------------------HHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC
Confidence 33345667888876 777763 33 4456788
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+|++|.+.
T Consensus 258 ~i~~D~vi~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 258 KIKADCLLYANGRTGNTDGLNL-ENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred EEEeCEEEEeecCCccccCCCc-hhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9999999999999999965433 33666 6788999998 567788999999999987654 7999999999999864
No 11
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=6.2e-36 Score=282.17 Aligned_cols=300 Identities=17% Similarity=0.199 Sum_probs=205.7
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCCee-eecC------Cc---ccccCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-KRAYDRMK-LHLA------KQ---FCELPHMPFPS 68 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~-~~~~------~~---~~~~~~~~~~~ 68 (381)
|+ +|||+||||||+|++||..|+++|.+|+|||+. .+||++. ..+.+... .... .. .+++.......
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 54 699999999999999999999999999999986 6777543 33333211 0000 00 00111000000
Q ss_pred CCCCCCC-HH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 69 RTPTFVP-RI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 69 ~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++..... .. .+.+.+++.+++.+++++.+. +..++ . .. |++ ++ ..+.||+||+|||+.|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~--~--~~--v~~-~g-----~~~~~d~lViATGs~p~~p 146 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD--A--HT--VEV-NG-----ERYTADHILIATGGRPSIP 146 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CE--EEE-CC-----EEEEeCEEEEecCCCCCCC
Confidence 1111111 11 122333444555677766543 43332 1 23 555 33 5799999999999999999
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||.+. +.++....... ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .+++..+.++...+
T Consensus 147 ~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l------ 214 (450)
T PRK06116 147 DIPGAEY----GITSDGFFALE-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDPDIRETL------ 214 (450)
T ss_pred CCCCcce----eEchhHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCHHHHHHH------
Confidence 9888653 23333333322 257999999999999999999999999999999988 55555444333222
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C---eEEEc
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N---EVEFE 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~---~v~~~ 296 (381)
.+.+++.+++++.+ |.++.. + .+.+.
T Consensus 215 -----------------------------------------------~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~ 247 (450)
T PRK06116 215 -----------------------------------------------VEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLE 247 (450)
T ss_pred -----------------------------------------------HHHHHHCCcEEECCCEEEEEEEcCCceEEEEEc
Confidence 34456678888877 777753 2 35567
Q ss_pred CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 297 NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+|+++++|.+++|+|++|+...+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+|++|
T Consensus 248 ~g~~i~~D~Vv~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i 325 (450)
T PRK06116 248 DGETLTVDCLIWAIGREPNTDGLGL-ENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERL 325 (450)
T ss_pred CCcEEEeCEEEEeeCCCcCCCCCCc-hhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHH
Confidence 8889999999999999999975433 33566 7788999999 567789999999999987644 8999999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 326 ~g~ 328 (450)
T PRK06116 326 FNN 328 (450)
T ss_pred hCC
Confidence 863
No 12
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.7e-35 Score=280.40 Aligned_cols=303 Identities=14% Similarity=0.144 Sum_probs=204.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEec---------CCCCCCCcC-CCCCCCeee-ecCCccc---ccCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILER---------EDCSASLWK-KRAYDRMKL-HLAKQFC---ELPHMPFPS 68 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~---------~~~~g~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~ 68 (381)
+|||+||||||+|+.+|..+++.|.+|+|||+ ...+||++. ..+++.-.+ ....... ....+-...
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 48999999999999999999999999999996 356788543 344442221 1110000 000000000
Q ss_pred CCCCCCCHHHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 69 RTPTFVPRISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 69 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
..........+. ..++.+++..+++++.+ ++..++. ..+.|...++ +...+.||+||+|||
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g---~~~~~~~d~LIIATG 176 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDG---TKLRYTAKHILIATG 176 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCC---cEEEEEcCEEEEecC
Confidence 000011222222 22233344456554433 3333322 4556666554 224689999999999
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 138 ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
+.|..|.+||.+. ..++.+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .+++..+.++...+
T Consensus 177 s~p~~p~ipG~~~----~~~~~~~~~l-~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~~~~l 250 (499)
T PLN02507 177 SRAQRPNIPGKEL----AITSDEALSL-EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFDDEMRAVV 250 (499)
T ss_pred CCCCCCCCCCccc----eechHHhhhh-hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccCHHHHHHH
Confidence 9999999988643 1222222222 2247899999999999999999999999999999988 56665555444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce-
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE- 292 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~- 292 (381)
.+.+++.+|+++.+ ++++.. ++
T Consensus 251 -----------------------------------------------------~~~l~~~GI~i~~~~~V~~i~~~~~~~ 277 (499)
T PLN02507 251 -----------------------------------------------------ARNLEGRGINLHPRTNLTQLTKTEGGI 277 (499)
T ss_pred -----------------------------------------------------HHHHHhCCCEEEeCCEEEEEEEeCCeE
Confidence 33345667888877 777753 23
Q ss_pred -EEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 293 -VEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 293 -v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
+.+.+|+++++|.+++++|++|++..+.. +..++ ++++|++.+| +.++|+.|||||+|||.+... .|..||+.
T Consensus 278 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l-~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~ 355 (499)
T PLN02507 278 KVITDHGEEFVADVVLFATGRAPNTKRLNL-EAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINLTPVALMEGTC 355 (499)
T ss_pred EEEECCCcEEEcCEEEEeecCCCCCCCCCc-hhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCccHHHHHHHHHH
Confidence 55567888999999999999999965432 33666 7788999999 567799999999999997654 88999999
Q ss_pred HHHHhhh
Q 035902 368 IANDINL 374 (381)
Q Consensus 368 ~a~~i~~ 374 (381)
+|+||.+
T Consensus 356 aa~ni~g 362 (499)
T PLN02507 356 FAKTVFG 362 (499)
T ss_pred HHHHHcC
Confidence 9999975
No 13
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=5.7e-35 Score=279.07 Aligned_cols=288 Identities=18% Similarity=0.211 Sum_probs=220.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+||||||||++||.+|++.|++++||++. +||.|.... .+..++.+ ......++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~----------~~~~~~~~-------~~~~~~~l~~~ 271 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM----------GIENFISV-------PETEGPKLAAA 271 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC----------cccccCCC-------CCCCHHHHHHH
Confidence 489999999999999999999999999999864 777654210 00011111 13456789999
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.+++++++++++++|.+++..+ +.|.+.+.++ ..+.||.||+|||+.++.+.+||.+.+.+..++.+...
T Consensus 272 l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~g-----~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~ 344 (517)
T PRK15317 272 LEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELANG-----AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC 344 (517)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECCC-----CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc
Confidence 9999999999999999999998865 5677877665 57999999999999999888998766666656655555
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|+..+.+|+++.|.+ .+.+. ..
T Consensus 345 ~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~-~l~~~------~~-------------------------- 391 (517)
T PRK15317 345 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP-ELKAD------QV-------------------------- 391 (517)
T ss_pred CchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc-ccccc------HH--------------------------
Confidence 5555578999999999999999999999999999999887 22110 00
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhc-CCCeEEccC--cceEeCC-----eEEEc---CC--cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-KGEIQVFPS--ITSINRN-----EVEFE---NG--KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--v~~v~~~-----~v~~~---~g--~~~~~D~vi~a 309 (381)
+.+.+. ..+|+++.+ +.++.++ .+.+. ++ +++++|.++++
T Consensus 392 ---------------------------l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~ 444 (517)
T PRK15317 392 ---------------------------LQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQ 444 (517)
T ss_pred ---------------------------HHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence 122223 257888887 7777655 24444 23 36899999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccCC
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~~ 380 (381)
+|++|+++ ++. . .-.++++|++.+| +..+|+.|||||+||+++.+. .|+.+|..+|.++..+|...+
T Consensus 445 ~G~~p~~~-~l~-~-~v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 445 IGLVPNTE-WLK-G-TVELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred ECCccCch-HHh-h-heeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 99999985 444 3 3226778999998 567789999999999987643 999999999999999887653
No 14
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.3e-35 Score=280.71 Aligned_cols=300 Identities=17% Similarity=0.220 Sum_probs=203.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCC-eeeecCCcc-----cccCCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDR-MKLHLAKQF-----CELPHMPFPSRTPTF 73 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~ 73 (381)
|.+|||+||||||+|++||..+++.|.+|+|||+. .+||.+ +..+.+. ......... ......+.+.. ..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~--~~ 79 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP--VS 79 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc--Cc
Confidence 45699999999999999999999999999999996 456643 3333322 111100000 00011110000 01
Q ss_pred CCHHHHH-----------HHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 74 VPRISFI-----------NYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 74 ~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.+..++. ..+...+++. +++++.++.+. .+ .+. +..+ + ..+.||+||+|||+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~--~~~--v~v~-~-----~~~~~d~lViATGs~p~ 146 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ES--PNT--VRVG-G-----ETLRAKRIFINTGARAA 146 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---cc--CCE--EEEC-c-----EEEEeCEEEEcCCCCCC
Confidence 1222222 2333444444 67766655431 11 133 4442 2 57999999999999999
Q ss_pred CCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhC
Q 035902 142 IPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFL 221 (381)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l 221 (381)
.|++||.+.. .++++.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.++...+
T Consensus 147 ~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~~~~~l---- 218 (463)
T PRK06370 147 IPPIPGLDEV--GYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDEDVAAAV---- 218 (463)
T ss_pred CCCCCCCCcC--ceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHHHHHHH----
Confidence 9999997642 244444443322 357999999999999999999999999999999998 67666554433332
Q ss_pred cHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEE
Q 035902 222 PCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEF 295 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~ 295 (381)
.+.+++.+++++.+ +.+++.+ + +.+
T Consensus 219 -------------------------------------------------~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~ 249 (463)
T PRK06370 219 -------------------------------------------------REILEREGIDVRLNAECIRVERDGDGIAVGL 249 (463)
T ss_pred -------------------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE
Confidence 33446678888876 7777643 2 333
Q ss_pred c---CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 296 E---NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 296 ~---~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
. +++++++|.+|+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+
T Consensus 250 ~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l-~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~a 327 (463)
T PRK06370 250 DCNGGAPEITGSHILVAVGRVPNTDDLGL-EAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIV 327 (463)
T ss_pred EeCCCceEEEeCEEEECcCCCcCCCCcCc-hhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 2 3457999999999999999974422 33666 7888999998 567789999999999987654 889999999
Q ss_pred HHHhhhc
Q 035902 369 ANDINLA 375 (381)
Q Consensus 369 a~~i~~~ 375 (381)
|+||.+.
T Consensus 328 a~ni~~~ 334 (463)
T PRK06370 328 AANLLDG 334 (463)
T ss_pred HHHHhCC
Confidence 9999864
No 15
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.2e-35 Score=279.35 Aligned_cols=299 Identities=15% Similarity=0.183 Sum_probs=205.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCeee-ecCCccc---ccCCCCC-----CCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMKL-HLAKQFC---ELPHMPF-----PSRTPT 72 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~-~~~~~~~---~~~~~~~-----~~~~~~ 72 (381)
+|||+||||||||++||..+++.|.+|+|+|+. .+||.. +..+.+.-.+ ....... ....+.. ..++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 589999999999999999999999999999995 677743 3333332211 1110000 0011100 001111
Q ss_pred CCC-----HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 73 FVP-----RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 73 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
... -.++.++++..+++.+++++.+ ++..++. ....+. .++ ..++||+||+|||+.|..|++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~-~~g-----~~~~~d~lIiATGs~p~~p~i~G 149 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVL-QDG-----TTYTAKKILIAVGGRPQKPNLPG 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEe-cCC-----eEEEcCEEEEecCCcCCCCCCCC
Confidence 111 1123445556666778776544 5554532 233332 233 57999999999999999998988
Q ss_pred CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 148 LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.+. ...+.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .+++..+.++...+
T Consensus 150 ~~~----~~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~~~~l---------- 213 (446)
T TIGR01424 150 HEL----GITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDDDMRALL---------- 213 (446)
T ss_pred ccc----eechHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCHHHHHHH----------
Confidence 653 1222222222 2247899999999999999999999999999999988 56665444433332
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--eEEEcCCcEe
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N--EVEFENGKIE 301 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~--~v~~~~g~~~ 301 (381)
.+.+++.+++++.+ +++++. + .+.+.+++++
T Consensus 214 -------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i 250 (446)
T TIGR01424 214 -------------------------------------------ARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEI 250 (446)
T ss_pred -------------------------------------------HHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEe
Confidence 33345678888877 777753 2 3556678899
Q ss_pred eccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 302 EFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 302 ~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++|+.|||||+|||++... .|..||+.+|++|.+
T Consensus 251 ~~D~viva~G~~pn~~~l~l-~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 251 VADVVLFATGRSPNTKGLGL-EAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred ecCEEEEeeCCCcCCCcCCc-cccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 99999999999999865433 33666 7788999999 567889999999999997654 889999999999986
No 16
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=4e-35 Score=274.96 Aligned_cols=284 Identities=19% Similarity=0.244 Sum_probs=203.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCC-CCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPT-FVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (381)
++|+|||||+||+.+|..|++. +.+|+|||++++++ |... ..+.+ ... .....++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~--------------~lp~~-----~~~~~~~~~~~~ 60 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC--------------ALPYY-----IGEVVEDRKYAL 60 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC--------------Ccchh-----hcCccCCHHHcc
Confidence 4799999999999999999987 56999999997543 1110 00000 001 11122222
Q ss_pred HHH-HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecC
Q 035902 81 NYV-DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~ 159 (381)
.+. +++.++.+++++.+++|.+++.++ +. |.+.++..++..++.||+||+|||+.|..|.+++. .++...
T Consensus 61 ~~~~~~~~~~~~i~v~~~~~V~~Id~~~--~~--v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~-----~~~~~~ 131 (438)
T PRK13512 61 AYTPEKFYDRKQITVKTYHEVIAINDER--QT--VTVLNRKTNEQFEESYDKLILSPGASANSLGFESD-----ITFTLR 131 (438)
T ss_pred cCCHHHHHHhCCCEEEeCCEEEEEECCC--CE--EEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCC-----CeEEec
Confidence 222 234456789998999999998866 55 55555432233468999999999999987765431 122222
Q ss_pred CCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 160 KYENG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 160 ~~~~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
...+. ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++..+.++...+
T Consensus 132 ~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~~~~~~l--------------- 195 (438)
T PRK13512 132 NLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQPI--------------- 195 (438)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCHHHHHHH---------------
Confidence 21111 12247899999999999999999999999999999988 56665544433332
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEeeccEEEEec
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~ 310 (381)
.+.+++.+|+++.+ +++++...+.+++|+++++|.+++|+
T Consensus 196 --------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~ 237 (438)
T PRK13512 196 --------------------------------------LDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGV 237 (438)
T ss_pred --------------------------------------HHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECc
Confidence 34456778888877 88888878888889899999999999
Q ss_pred CCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhhc
Q 035902 311 GYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 311 G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~~ 375 (381)
|++||++. +. . .++ ++++|++.+| +.++++.|||||+|||++.. ..|..||+.+|+||.+.
T Consensus 238 G~~pn~~~-l~-~-~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 238 GTHPNSKF-IE-S-SNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred CCCcChHH-HH-h-cCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 99999864 44 3 565 6778999998 56778999999999997521 15788999999999863
No 17
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=9.7e-35 Score=277.12 Aligned_cols=286 Identities=20% Similarity=0.265 Sum_probs=213.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+||||||||++||..|++.|.+|+||++ .+||.+... ..+..+... + .....++.+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~----------~~~~~~~~~------~-~~~~~~l~~~ 272 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT----------VGIENLISV------P-YTTGSQLAAN 272 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC----------cCccccccc------C-CCCHHHHHHH
Confidence 38999999999999999999999999999985 467654321 000011111 1 1346678888
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.+++++++++.+++|.+++.++ +.+.+.+.++ ..+.||+||+|||+.+..|.+||...+.+...+.+...
T Consensus 273 l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~g-----~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~ 345 (515)
T TIGR03140 273 LEEHIKQYPIDLMENQRAKKIETED--GLIVVTLESG-----EVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHC 345 (515)
T ss_pred HHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECCC-----CEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeecc
Confidence 8888988999999999999998765 5677777665 57999999999999998888888654444444444333
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+ .+... ..
T Consensus 346 ~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~-~l~~~------~~-------------------------- 392 (515)
T TIGR03140 346 DGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD-ELKAD------KV-------------------------- 392 (515)
T ss_pred ChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC-cCChh------HH--------------------------
Confidence 3334468999999999999999999999999999999877 32110 00
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC-----eEEEcC---C--cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN-----EVEFEN---G--KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~-----~v~~~~---g--~~~~~D~vi~a 309 (381)
..+.+++ .+|+++.+ ++++.++ ++.+.+ + +++++|.++++
T Consensus 393 ---------------------------l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a 445 (515)
T TIGR03140 393 ---------------------------LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQ 445 (515)
T ss_pred ---------------------------HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEE
Confidence 1223333 57888877 7777654 355543 2 47899999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|++|+++ ++. . .--++.+|++.+| +.++|+.|||||+|||++.+. .|+.+|..+|.+|.++|..
T Consensus 446 ~G~~Pn~~-~l~-~-~~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 446 IGLVPNTE-WLK-D-AVELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred eCCcCCch-HHh-h-hcccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 99999986 344 3 3126678999998 567789999999999987543 9999999999999988753
No 18
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.4e-35 Score=274.82 Aligned_cols=305 Identities=15% Similarity=0.148 Sum_probs=201.8
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCee-eecCCccccc---CCCCCCCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMK-LHLAKQFCEL---PHMPFPSRTPTFV 74 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~ 74 (381)
|+ +|||+||||||+|+.+|..+++.|.+|+|||+.+.+||++ +..+++... ......+... ..+-.... ....
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~ 79 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKI 79 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCc
Confidence 54 6999999999999999999999999999999987788843 333443311 1111000000 00000000 0011
Q ss_pred CHHHHHH-----------HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC-
Q 035902 75 PRISFIN-----------YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI- 142 (381)
Q Consensus 75 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~- 142 (381)
+...+.+ .+...+++.+++++.+. +..+ + .+...|...++ +...+.||+||+|||+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~--~--~~~v~v~~~~g---~~~~~~~d~lViATGs~p~~~ 151 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT--G--GNTLEVTGEDG---KTTVIEFDNAIIAAGSRPIQL 151 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--c--CCEEEEecCCC---ceEEEEcCEEEEeCCCCCCCC
Confidence 1222222 22234455577765443 2222 2 24444443332 23579999999999999874
Q ss_pred CCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCc
Q 035902 143 PEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLP 222 (381)
Q Consensus 143 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~ 222 (381)
|.+++.. ..++.+.+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+.+.+
T Consensus 152 p~~~~~~---~~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~~~~~~~~~~l- 225 (471)
T PRK06467 152 PFIPHDD---PRIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADKDIVKVFTKRI- 225 (471)
T ss_pred CCCCCCC---CcEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCHHHHHHHHHHH-
Confidence 4444422 12444444443332 57999999999999999999999999999999998 777876665554443333
Q ss_pred HHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEc
Q 035902 223 CKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFE 296 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~ 296 (381)
++. ++++.+ ++++.. ++ +.+.
T Consensus 226 ----------------------------------------------------~~~-v~i~~~~~v~~i~~~~~~~~v~~~ 252 (471)
T PRK06467 226 ----------------------------------------------------KKQ-FNIMLETKVTAVEAKEDGIYVTME 252 (471)
T ss_pred ----------------------------------------------------hhc-eEEEcCCEEEEEEEcCCEEEEEEE
Confidence 334 666665 666652 33 3333
Q ss_pred C--C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 297 N--G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 297 ~--g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
+ + +++++|.+++++|++||++.+.. ...++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+
T Consensus 253 ~~~~~~~~i~~D~vi~a~G~~pn~~~l~~-~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~a 330 (471)
T PRK06467 253 GKKAPAEPQRYDAVLVAVGRVPNGKLLDA-EKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVA 330 (471)
T ss_pred eCCCcceEEEeCEEEEeecccccCCccCh-hhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHHHHHHHH
Confidence 3 2 46999999999999999976544 44666 7889999998 567789999999999987654 899999999
Q ss_pred HHHhhhc
Q 035902 369 ANDINLA 375 (381)
Q Consensus 369 a~~i~~~ 375 (381)
|++|.+.
T Consensus 331 a~~i~g~ 337 (471)
T PRK06467 331 AEVIAGK 337 (471)
T ss_pred HHHHcCC
Confidence 9999864
No 19
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-34 Score=273.25 Aligned_cols=301 Identities=19% Similarity=0.242 Sum_probs=202.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCeeeecCCcccc----cCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMKLHLAKQFCE----LPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 77 (381)
+|||+||||||||++||..+++.|.+|+|||+.. +||.| +..+.+.-.+......+. ...+..... .......
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCHH
Confidence 5899999999999999999999999999999987 88854 444444321111111100 011100000 1112333
Q ss_pred HHHHH-----------HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 78 SFINY-----------VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 78 ~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
++.++ ++..+++.+++++.++ +..++ .....+...++ ...+.||+||+|||+.|..| |
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~----~~~~~v~~~~~----~~~~~~d~lViAtGs~p~~~--p 150 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD----PNTVRVMTEDG----EQTYTAKNIILATGSRPREL--P 150 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc----CCEEEEecCCC----cEEEEeCEEEEeCCCCCCCC--C
Confidence 44443 3444555677765543 33332 13433443222 15799999999999998754 4
Q ss_pred CCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 147 GLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 147 g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
|.+. .+. +++..+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+
T Consensus 151 g~~~-~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l-------- 219 (462)
T PRK06416 151 GIEI-DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDKEISKLA-------- 219 (462)
T ss_pred CCCC-CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCHHHHHHH--------
Confidence 5542 232 333333332 22357999999999999999999999999999999988 67776554443333
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCC-
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENG- 298 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g- 298 (381)
.+.+++.+++++.+ +++++.+ . +.+.++
T Consensus 220 ---------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg 254 (462)
T PRK06416 220 ---------------------------------------------ERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGG 254 (462)
T ss_pred ---------------------------------------------HHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCC
Confidence 33345667888877 7777653 3 344555
Q ss_pred --cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 299 --KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 299 --~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+++++|.+|+|+|++|+...+.. +..++ ++ +|++.+| +.++++.|+|||+|||...+. .|..||+.+|+||
T Consensus 255 ~~~~i~~D~vi~a~G~~p~~~~l~l-~~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni 331 (462)
T PRK06416 255 KEETLEADYVLVAVGRRPNTENLGL-EELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAI 331 (462)
T ss_pred eeEEEEeCEEEEeeCCccCCCCCCc-hhcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHH
Confidence 67999999999999999865422 33566 56 8999998 566789999999999987543 8999999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 332 ~~~ 334 (462)
T PRK06416 332 AGN 334 (462)
T ss_pred cCC
Confidence 874
No 20
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.8e-34 Score=271.79 Aligned_cols=308 Identities=16% Similarity=0.204 Sum_probs=196.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCCeeeecCCccc-c----cCCCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-WKKRAYDRMKLHLAKQFC-E----LPHMPFPSRTPTFV 74 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~ 74 (381)
|++|||+||||||||++||..+++.|.+|+|||++ .+||. .+..+.+.-.+-...... . ...+.... ....
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~ 78 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTF 78 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--Cccc
Confidence 44699999999999999999999999999999986 45663 333333321100000000 0 00000000 0011
Q ss_pred CHHHHHHHHHHHHHHh--CCccccc-cEEEEEEE----eCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 75 PRISFINYVDNYVSQM--GINPRYH-RSVESASY----DENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~i~~----~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
....+....++..++. ++...+. ..|+.++- .+ .+.+.+...++ +..+++||+||+|||+.|..| ||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~-~~~v~v~~~~g---~~~~~~~d~lViATGs~p~~~--pg 152 (466)
T PRK07818 79 DYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD-ANTLEVDLNDG---GTETVTFDNAIIATGSSTRLL--PG 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC-CCEEEEEecCC---CeeEEEcCEEEEeCCCCCCCC--CC
Confidence 2222222222111110 1111111 12222221 11 24444443332 235799999999999998754 55
Q ss_pred CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 148 LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.+. .+.++.+.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.++...+
T Consensus 153 ~~~-~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~l---------- 219 (466)
T PRK07818 153 TSL-SENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVSKEI---------- 219 (466)
T ss_pred CCC-CCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHHHHH----------
Confidence 432 2334444332222 2357899999999999999999999999999999988 77777655544333
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEc--CC-
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFE--NG- 298 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~--~g- 298 (381)
.+.+++.+|+++.+ |++++++ . +.+. +|
T Consensus 220 -------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~ 256 (466)
T PRK07818 220 -------------------------------------------AKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGK 256 (466)
T ss_pred -------------------------------------------HHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCC
Confidence 33446678888877 7777653 2 3443 56
Q ss_pred -cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhh
Q 035902 299 -KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDIN 373 (381)
Q Consensus 299 -~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~ 373 (381)
+++++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+|++|.
T Consensus 257 ~~~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 257 AQELEADKVLQAIGFAPRVEGYGL-EKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred eEEEEeCEEEECcCcccCCCCCCc-hhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHc
Confidence 47999999999999999975433 43666 6778999998 567789999999999987644 89999999999998
Q ss_pred hc
Q 035902 374 LA 375 (381)
Q Consensus 374 ~~ 375 (381)
+.
T Consensus 335 g~ 336 (466)
T PRK07818 335 GA 336 (466)
T ss_pred CC
Confidence 64
No 21
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=7.2e-35 Score=261.07 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=215.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|..++|||||||++|+.+|..|.++. .++++||+++...- ... +........+..+
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~---------------------~pl-L~eva~g~l~~~~ 58 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF---------------------TPL-LYEVATGTLSESE 58 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc---------------------chh-hhhhhcCCCChhh
Confidence 55689999999999999999999985 88999999873210 000 0001122344456
Q ss_pred HHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 79 FINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
+.-.++..+++.+ +++ ...+|++|+.+. +. |.++++ ..+.||+||+|+|+.+..+.+||..++.-....
T Consensus 59 i~~p~~~~~~~~~~v~~-~~~~V~~ID~~~--k~--V~~~~~-----~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks 128 (405)
T COG1252 59 IAIPLRALLRKSGNVQF-VQGEVTDIDRDA--KK--VTLADL-----GEISYDYLVVALGSETNYFGIPGAAEYAFGLKT 128 (405)
T ss_pred eeccHHHHhcccCceEE-EEEEEEEEcccC--CE--EEeCCC-----ccccccEEEEecCCcCCcCCCCCHHHhCCCCCC
Confidence 6666677776544 443 456799999876 66 888774 689999999999999999999997765322111
Q ss_pred cCCCC----------CCCC-CC----CCeEEEEcCCCCHHHHHHHHhhCC-------------CeeEEEEecCcceechh
Q 035902 158 SSKYE----------NGGK-FI----GKNVLVVGCGNSGMEIAYDLSSCG-------------ACTSIVVRGPVHVLTRE 209 (381)
Q Consensus 158 ~~~~~----------~~~~-~~----~~~v~viG~G~~~~e~a~~l~~~g-------------~~v~~i~r~~~~~~p~~ 209 (381)
..+.. ...+ .. .-.++|+|+|++|+|+|.+|+++. .+|+++.+.+ .++|..
T Consensus 129 ~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ILp~~ 207 (405)
T COG1252 129 LEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RILPMF 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhccCC
Confidence 11110 0001 11 136999999999999999998742 2899999999 888888
Q ss_pred hHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cce
Q 035902 210 IVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITS 287 (381)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~ 287 (381)
..++...+.+. +++.+|+++.+ |++
T Consensus 208 ~~~l~~~a~~~-----------------------------------------------------L~~~GV~v~l~~~Vt~ 234 (405)
T COG1252 208 PPKLSKYAERA-----------------------------------------------------LEKLGVEVLLGTPVTE 234 (405)
T ss_pred CHHHHHHHHHH-----------------------------------------------------HHHCCCEEEcCCceEE
Confidence 77766665444 47789999988 999
Q ss_pred EeCCeEEEcCCcE-eeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc------c
Q 035902 288 INRNEVEFENGKI-EEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL------H 359 (381)
Q Consensus 288 v~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~------~ 359 (381)
+++++|++.+|+. +++|.+|||+|.++++ +.+ +..+. .|..|++.++......+.|+||++|||+... .
T Consensus 235 v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~--~~~-~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~ 311 (405)
T COG1252 235 VTPDGVTLKDGEEEIPADTVVWAAGVRASP--LLK-DLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPP 311 (405)
T ss_pred ECCCcEEEccCCeeEecCEEEEcCCCcCCh--hhh-hcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCC
Confidence 9999999999984 9999999999999986 344 31244 5778999999545557999999999997543 2
Q ss_pred ---CccHHHHHHHHHhhhcccc
Q 035902 360 ---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~l~~ 378 (381)
.|+.||..+|+||...++.
T Consensus 312 tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 312 TAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999998875
No 22
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-34 Score=270.66 Aligned_cols=306 Identities=16% Similarity=0.175 Sum_probs=197.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCCee-eecCCcccccCC---CCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-WKKRAYDRMK-LHLAKQFCELPH---MPFPSRTPTFVP 75 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 75 (381)
|++|||+||||||||+.||..+++.|.+|+|||+...+||. .+..+.+... ......+..... ..+.........
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 77899999999999999999999999999999987778884 3333333221 111110100000 000000000111
Q ss_pred HHHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 76 RISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 76 ~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
...+. ..++...++.+++++.+. . ...+ ...+.|...++ +...++||+||||||+.|. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a--~~~~-~~~v~v~~~~g---~~~~~~~d~lVIATGs~p~--~ 150 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW--G--RLDG-VGKVVVKAEDG---SETQLEAKDIVIATGSEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--E--EEcc-CCEEEEEcCCC---ceEEEEeCEEEEeCCCCCC--C
Confidence 11111 122233334455544332 1 2222 23444444343 2247999999999999975 3
Q ss_pred CCCCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 145 VPGLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 145 ~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
+||.+. .+. ++++...... ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 151 ipg~~~-~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~~~~~~l------ 221 (466)
T PRK06115 151 LPGVTI-DNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDTETAKTL------ 221 (466)
T ss_pred CCCCCC-CCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCHHHHHHH------
Confidence 566542 222 3443333332 2358999999999999999999999999999999988 67776554433333
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eE--EEc-
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EV--EFE- 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v--~~~- 296 (381)
.+.+++.+|+++.+ ++++..+ ++ .+.
T Consensus 222 -----------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~ 254 (466)
T PRK06115 222 -----------------------------------------------QKALTKQGMKFKLGSKVTGATAGADGVSLTLEP 254 (466)
T ss_pred -----------------------------------------------HHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEE
Confidence 33445678888877 7777642 33 332
Q ss_pred --C--CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 297 --N--GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 297 --~--g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
+ ++++++|.|++++|++||+..+.. +..++ ++..| +.+| +.++|+.|+|||+|||++.+. .|..||+.+
T Consensus 255 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~~~g~~~~~~G-~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~a 331 (466)
T PRK06115 255 AAGGAAETLQADYVLVAIGRRPYTQGLGL-ETVGLETDKRG-MLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVAC 331 (466)
T ss_pred cCCCceeEEEeCEEEEccCCccccccCCc-ccccceeCCCC-EEEC-CCeecCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 2 357999999999999999864433 43555 56667 4566 467799999999999998754 899999999
Q ss_pred HHHhhhc
Q 035902 369 ANDINLA 375 (381)
Q Consensus 369 a~~i~~~ 375 (381)
|+||.+.
T Consensus 332 a~~i~~~ 338 (466)
T PRK06115 332 IERIAGK 338 (466)
T ss_pred HHHHcCC
Confidence 9999864
No 23
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=8e-34 Score=272.68 Aligned_cols=287 Identities=20% Similarity=0.304 Sum_probs=207.9
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHH
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (381)
|++ |||+||||||||++||..|++.|++|+|||++ .+||.+... .....++.. ...+..++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~----------~~i~~~pg~-------~~~~~~~l 62 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITIT----------SEVVNYPGI-------LNTTGPEL 62 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEec----------cccccCCCC-------cCCCHHHH
Confidence 654 89999999999999999999999999999996 466543211 000011111 12345688
Q ss_pred HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecC
Q 035902 80 INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~ 159 (381)
.+++++.++++++++ .+++|.+++.++ ..+.+.+.++ .+.|++||+|||++|..|++||.+.+.+..++.+
T Consensus 63 ~~~l~~~~~~~gv~~-~~~~V~~i~~~~--~~~~V~~~~g------~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~ 133 (555)
T TIGR03143 63 MQEMRQQAQDFGVKF-LQAEVLDVDFDG--DIKTIKTARG------DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYC 133 (555)
T ss_pred HHHHHHHHHHcCCEE-eccEEEEEEecC--CEEEEEecCC------EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEE
Confidence 888888888889886 477888888754 4556666543 5889999999999999999999765544445554
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 160 KYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 160 ~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
..++...+.+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .+... .. .
T Consensus 134 ~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~-~~~~~--~~----~---------------------- 184 (555)
T TIGR03143 134 ATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP-DFTCA--KL----I---------------------- 184 (555)
T ss_pred eecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC-ccccC--HH----H----------------------
Confidence 4444445578999999999999999999999999999999987 22110 00 0
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe----EEE---cCCcEe----eccE-
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE----VEF---ENGKIE----EFEA- 305 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~----v~~---~~g~~~----~~D~- 305 (381)
.....+..+|+++.+ |+++.++. +.+ .+|+.. ++|.
T Consensus 185 ------------------------------~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~ 234 (555)
T TIGR03143 185 ------------------------------AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAG 234 (555)
T ss_pred ------------------------------HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEecccccc
Confidence 011123457888776 77776542 222 346532 3666
Q ss_pred ---EEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc----ccCccHHHHHHHHHhhhccc
Q 035902 306 ---IIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG----LHGISIDAKNIANDINLALT 377 (381)
Q Consensus 306 ---vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~----~~~a~~~a~~~a~~i~~~l~ 377 (381)
|++++|++|++. ++. . ++ ++++|++.+| +.++++.|||||+|||... ...|+.||..+|.+|..+|.
T Consensus 235 ~~~Vi~a~G~~Pn~~-l~~-~--~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 235 TFGVFVFVGYAPSSE-LFK-G--VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred ceEEEEEeCCCCChh-HHh-h--hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHH
Confidence 999999999996 344 2 33 6778999998 5677889999999999643 23899999999999998874
Q ss_pred c
Q 035902 378 D 378 (381)
Q Consensus 378 ~ 378 (381)
.
T Consensus 310 ~ 310 (555)
T TIGR03143 310 E 310 (555)
T ss_pred h
Confidence 3
No 24
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.7e-34 Score=270.18 Aligned_cols=304 Identities=17% Similarity=0.213 Sum_probs=201.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeee-ecCCcccccCCCCCCCCCC---CCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKL-HLAKQFCELPHMPFPSRTP---TFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (381)
++||+||||||||+++|..|++.|.+|+|||+. .+||+|.+ .+.+.-.+ ............++...++ .-.+..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 499999999999999999999999999999996 58887754 22221110 0000000000011000000 012233
Q ss_pred HHHHHHHHHHH------------Hh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDNYVS------------QM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~~~~------------~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.++.++... ++ +++++. .++..++ ...+.|++.++ +..+++||+||+|||+.|..|+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~-g~v~~id----~~~~~V~~~~g---~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLN-GEARFVD----ERTLTVTLNDG---GEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEE-EEEEEec----CCEEEEEecCC---CeEEEECCEEEEeCCCCCCCCC
Confidence 44333332221 22 344332 2444443 24577887664 2257999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||++... .+++.+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++.+. .++|..+.++...+
T Consensus 157 i~G~~~~~--~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~~~~~~l------- 224 (468)
T PRK14694 157 VPGLAETP--YLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDPAVGEAI------- 224 (468)
T ss_pred CCCCCCCc--eEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCHHHHHHH-------
Confidence 99986532 3443333222 234799999999999999999999999999999864 45565444433333
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEE-cCCc
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEF-ENGK 299 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~-~~g~ 299 (381)
.+.+++.+|+++.+ +.++..+ .+.+ .++.
T Consensus 225 ----------------------------------------------~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~ 258 (468)
T PRK14694 225 ----------------------------------------------EAAFRREGIEVLKQTQASEVDYNGREFILETNAG 258 (468)
T ss_pred ----------------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 33446678888876 7777543 2322 2344
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|.+|+...+.. +..++..++|++.+| +.++++.|||||+|||++.+. .|..||+.+|.+|.+.
T Consensus 259 ~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 259 TLRAEQLLVATGRTPNTENLNL-ESIGVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred EEEeCEEEEccCCCCCcCCCCc-hhcCcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999965432 335664468899998 567789999999999987655 8889999999999753
No 25
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=3.9e-34 Score=269.44 Aligned_cols=306 Identities=14% Similarity=0.171 Sum_probs=202.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHhC-CCCeEEEecC--------CCCCC-CcCCCCCCC-eeeecCCccccc---CCC---
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNL-SVPNIILERE--------DCSAS-LWKKRAYDR-MKLHLAKQFCEL---PHM--- 64 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~--------~~~g~-~~~~~~~~~-~~~~~~~~~~~~---~~~--- 64 (381)
.+|||+||||||+|..+|..+++. |.+|+|||+. ..+|| +.+..+.+. ............ ..+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 369999999999999999999997 8999999974 45777 344444332 211111100000 000
Q ss_pred ----CCCCCCCCCCC-HHHHHHH----HHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEee---cCCCceEEEEeCE
Q 035902 65 ----PFPSRTPTFVP-RISFINY----VDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKN---TALDAYEEYVARY 131 (381)
Q Consensus 65 ----~~~~~~~~~~~-~~~~~~~----~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~~~~~~~d~ 131 (381)
....++..... .+++.+. ..+.+++ .+++++.+. . ...+ .+. |.... +...+.+.+.||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a---~f~~-~~~--v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-G---ALED-KNV--VLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-E---EEcc-CCE--EEEeeccCCCCCcceEEECCE
Confidence 00011111111 1222222 2223333 255554432 1 1111 233 44432 1111135799999
Q ss_pred EEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhC---CCeeEEEEecCcceech
Q 035902 132 LVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC---GACTSIVVRGPVHVLTR 208 (381)
Q Consensus 132 vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~---g~~v~~i~r~~~~~~p~ 208 (381)
||+|||+.|..|++||.+. +..+.+.... ...+++++|||+|.+|+|+|..+..+ |.+|+++.+.+ .++|.
T Consensus 155 lIIATGs~p~~p~i~G~~~----~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~il~~ 228 (486)
T TIGR01423 155 ILLATGSWPQMLGIPGIEH----CISSNEAFYL-DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MILRG 228 (486)
T ss_pred EEEecCCCCCCCCCCChhh----eechhhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-ccccc
Confidence 9999999999999998753 2333333222 23579999999999999999877655 89999999998 67777
Q ss_pred hhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cc
Q 035902 209 EIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--IT 286 (381)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~ 286 (381)
.+.++...+.+ .+++.+++++.+ ++
T Consensus 229 ~d~~~~~~l~~-----------------------------------------------------~L~~~GI~i~~~~~v~ 255 (486)
T TIGR01423 229 FDSTLRKELTK-----------------------------------------------------QLRANGINIMTNENPA 255 (486)
T ss_pred cCHHHHHHHHH-----------------------------------------------------HHHHcCCEEEcCCEEE
Confidence 66655544433 345677888877 77
Q ss_pred eEeCC-----eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc-
Q 035902 287 SINRN-----EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH- 359 (381)
Q Consensus 287 ~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~- 359 (381)
++..+ .+.+.+++++++|.+++|+|++|++..+.. +..++ ++++|++.+| +.++|+.|||||+|||++.++
T Consensus 256 ~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l-~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~GDv~~~~~l 333 (486)
T TIGR01423 256 KVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQL-DKVGVELTKKGAIQVD-EFSRTNVPNIYAIGDVTDRVML 333 (486)
T ss_pred EEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCc-hhhCceECCCCCEecC-CCCcCCCCCEEEeeecCCCccc
Confidence 77532 356678889999999999999999975433 43666 7788999999 566789999999999998755
Q ss_pred --CccHHHHHHHHHhhhc
Q 035902 360 --GISIDAKNIANDINLA 375 (381)
Q Consensus 360 --~a~~~a~~~a~~i~~~ 375 (381)
.|..||+.+|+||.+.
T Consensus 334 ~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 334 TPVAINEGAAFVDTVFGN 351 (486)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 8999999999999863
No 26
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=7.7e-34 Score=267.02 Aligned_cols=299 Identities=17% Similarity=0.192 Sum_probs=200.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-CCCC-cCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-SASL-WKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RI 77 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (381)
|++|||+||||||||++||..|++.|.+|+|||+++. +||. .+..+.+...+-.... . ..++..... .+
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~--~~~~~~~~~~~~ 72 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K--NLSFEQVMATKN 72 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c--CCCHHHHHHHHH
Confidence 7789999999999999999999999999999999864 5663 3332222111000000 0 001111111 11
Q ss_pred HH----HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCc
Q 035902 78 SF----INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEG 153 (381)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~ 153 (381)
.+ .....+.+.+.+++++.++. ..+ + .+. |....+. +...+.||+||+|||+.|..|++||.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~gV~~~~g~~-~~~--~--~~~--v~v~~~~--~~~~~~~d~vViATGs~~~~p~i~G~~~~~- 142 (438)
T PRK07251 73 TVTSRLRGKNYAMLAGSGVDLYDAEA-HFV--S--NKV--IEVQAGD--EKIELTAETIVINTGAVSNVLPIPGLADSK- 142 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEE-EEc--c--CCE--EEEeeCC--CcEEEEcCEEEEeCCCCCCCCCCCCcCCCC-
Confidence 11 11122334445666554332 111 1 233 4443321 125799999999999999999999975433
Q ss_pred ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
.++++....... ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+
T Consensus 143 ~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~---------------- 204 (438)
T PRK07251 143 HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSVAALA---------------- 204 (438)
T ss_pred cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHHHHHH----------------
Confidence 244443333322 357899999999999999999999999999999988 67776554433322
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEE-EcCCcEeeccEEEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVE-FENGKIEEFEAIIF 308 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~-~~~g~~~~~D~vi~ 308 (381)
.+.+++.+++++.+ +++++.+ .+. ..+++++++|.+++
T Consensus 205 -------------------------------------~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viv 247 (438)
T PRK07251 205 -------------------------------------KQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLY 247 (438)
T ss_pred -------------------------------------HHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEE
Confidence 23345667888876 7777643 333 34677899999999
Q ss_pred ecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 309 ATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
|+|++|+.+.+.. +..++ .+++|++.+| +.++++.|||||+|||.+.+. .|..+++.++.++.+
T Consensus 248 a~G~~p~~~~l~l-~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 248 ATGRKPNTEPLGL-ENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred eeCCCCCcccCCc-hhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 9999999865332 33455 5778999998 567789999999999998754 788899999988875
No 27
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.9e-34 Score=273.13 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=204.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeeeecCCcc--------cccCCCCCCCCCCCC-
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKLHLAKQF--------CELPHMPFPSRTPTF- 73 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 73 (381)
|||+||||||+|+++|..+++.|.+|+|||+.. +||.|.+ .+++...+...... ++........++...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999976 7776543 23332111000000 000000000111111
Q ss_pred CCHHHHHHH-----HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 74 VPRISFINY-----VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 74 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
...+++... +...+++++++++.++ +..+ + .. +|.+.++ ...+.||+||+|||+.|..|++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~---~-~~--~v~v~~g----~~~~~~~~lIiATGs~p~~p~i~G~ 148 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFK---D-PK--TVKVDLG----REVRGAKRFLIATGARPAIPPIPGL 148 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEc---c-CC--EEEEcCC----eEEEEeCEEEEcCCCCCCCCCCCCc
Confidence 112233332 2344566677765443 2221 1 12 3655443 2468999999999999999999997
Q ss_pred CCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 149 GSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
+... ++++.+..... ..+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 149 ~~~~--~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~l----------- 213 (463)
T TIGR02053 149 KEAG--YLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISAAV----------- 213 (463)
T ss_pred ccCc--eECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHHHH-----------
Confidence 6542 34443433322 246999999999999999999999999999999998 67776655444333
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEc---CCc
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFE---NGK 299 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~---~g~ 299 (381)
.+.+++.+|+++.+ |++++.+ .+.++ +++
T Consensus 214 ------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~ 251 (463)
T TIGR02053 214 ------------------------------------------EEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQG 251 (463)
T ss_pred ------------------------------------------HHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCce
Confidence 33345667888877 7777643 23333 236
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++|+.+.+.. +..++ ++++|++.+| +.++|+.|||||+|||.+.+. .|..||+.+|++|.+.
T Consensus 252 ~i~~D~ViiA~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 252 EVEADELLVATGRRPNTDGLGL-EKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred EEEeCEEEEeECCCcCCCCCCc-cccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 8999999999999999974422 33666 7789999999 567889999999999998754 8999999999999864
No 28
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.3e-34 Score=276.54 Aligned_cols=304 Identities=15% Similarity=0.173 Sum_probs=200.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeeeecCCcc-cccCCCCCCCCC---CCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKLHLAKQF-CELPHMPFPSRT---PTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 77 (381)
+|||+||||||+|+++|..+++.|.+|+|||++ .+||.|.+ .+++...+...... ......++...+ .......
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 489999999999999999999999999999997 78887653 33332211000000 000001110000 0012233
Q ss_pred HHHHHHHH------------HHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDN------------YVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~------------~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.++.++ .++++ +++++.+ ++..+ + .+.+.|...++ +...++||+||+|||+.|..|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~---~-~~~~~v~~~~g---~~~~~~~d~lviAtGs~p~~p~ 248 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFK---D-DQTLIVRLNDG---GERVVAFDRCLIATGASPAVPP 248 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEe---c-CCEEEEEeCCC---ceEEEEcCEEEEcCCCCCCCCC
Confidence 33332221 22222 4444332 23322 2 24555655443 2247999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||.+... .+++.+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ +++..+.++...+
T Consensus 249 i~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~~~~~~l------- 316 (561)
T PRK13748 249 IPGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDPAIGEAV------- 316 (561)
T ss_pred CCCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCHHHHHHH-------
Confidence 99876431 233332222 22357999999999999999999999999999999853 5555555444333
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEc-CCc
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFE-NGK 299 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~-~g~ 299 (381)
.+.+++.+|+++.+ ++++..+ .+.+. ++.
T Consensus 317 ----------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~ 350 (561)
T PRK13748 317 ----------------------------------------------TAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG 350 (561)
T ss_pred ----------------------------------------------HHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC
Confidence 33446677888876 7776532 33222 234
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++||+..+.. +..++ ++++|++.+| +.++|+.|||||+|||++.+. .|..+|+.+|.+|.+.
T Consensus 351 ~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 351 ELRADKLLVATGRAPNTRSLAL-DAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred eEEeCEEEEccCCCcCCCCcCc-hhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 6999999999999999965433 43666 7888999999 567789999999999987654 8899999999999753
No 29
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.3e-34 Score=274.29 Aligned_cols=300 Identities=19% Similarity=0.256 Sum_probs=198.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCe-eeecCCc---ccccCCCCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRM-KLHLAKQ---FCELPHMPFPSRTPTFVP 75 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (381)
|++|||+||||||+|+++|..|++.|.+|+|||+ ..+||.|.. .+++.. ....... ......+..... ....+
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~ 78 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKID 78 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccC
Confidence 7789999999999999999999999999999999 678887653 222211 1110000 000111110000 12334
Q ss_pred HHHHHHHHHHHHHHh------------CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 76 RISFINYVDNYVSQM------------GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
..++.++.++..+++ ++++.. .++ ...+ ... +.+ ++ ..+.||+||+|||+. .|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~---~~~~-~~~--v~v-~~-----~~~~~d~lIiATGs~--~p 143 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIK-GTA---RFVD-PNT--VEV-NG-----ERIEAKNIVIATGSR--VP 143 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEE-EEE---EEcc-CCE--EEE-Cc-----EEEEeCEEEEeCCCC--CC
Confidence 556666555544433 222211 111 1111 122 444 33 679999999999999 45
Q ss_pred CCCCCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCc
Q 035902 144 EVPGLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLP 222 (381)
Q Consensus 144 ~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~ 222 (381)
.+||.+...+. +++..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|..+.++...+.
T Consensus 144 ~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~~---- 217 (460)
T PRK06292 144 PIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSKQAQ---- 217 (460)
T ss_pred CCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHHHHH----
Confidence 56665432222 333333222 23357999999999999999999999999999999988 677765554443333
Q ss_pred HHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC---eEEE--
Q 035902 223 CKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN---EVEF-- 295 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~---~v~~-- 295 (381)
+.+++. ++++.+ +.+++.+ .+.+
T Consensus 218 -------------------------------------------------~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~ 247 (460)
T PRK06292 218 -------------------------------------------------KILSKE-FKIKLGAKVTSVEKSGDEKVEELE 247 (460)
T ss_pred -------------------------------------------------HHHhhc-cEEEcCCEEEEEEEcCCceEEEEE
Confidence 333455 777766 7777543 3443
Q ss_pred cCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHH
Q 035902 296 ENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIA 369 (381)
Q Consensus 296 ~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a 369 (381)
.++ +++++|.+++++|.+|+.+.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+|
T Consensus 248 ~~~~~~~i~~D~vi~a~G~~p~~~~l~l-~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa 325 (460)
T PRK06292 248 KGGKTETIEADYVLVATGRRPNTDGLGL-ENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAA 325 (460)
T ss_pred cCCceEEEEeCEEEEccCCccCCCCCCc-HhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHHHHHHHH
Confidence 233 57999999999999999975433 43666 7788999999 567789999999999987654 8999999999
Q ss_pred HHhhhc
Q 035902 370 NDINLA 375 (381)
Q Consensus 370 ~~i~~~ 375 (381)
.+|.+.
T Consensus 326 ~~i~~~ 331 (460)
T PRK06292 326 ENAAGD 331 (460)
T ss_pred HHhcCC
Confidence 999864
No 30
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=9.4e-34 Score=269.37 Aligned_cols=304 Identities=15% Similarity=0.212 Sum_probs=201.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCCee-eecCCccc--------ccCCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDRMK-LHLAKQFC--------ELPHMPFPSRTPT 72 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~ 72 (381)
+|||+|||||++|+.||..+++.|.+|+|||++ .+|| +.+..+.+.-. ........ ++.. ....+++.
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~-~~~~d~~~ 125 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT-QFSFNLPL 125 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc-cCccCHHH
Confidence 589999999999999999999999999999997 4666 34444443222 21111110 1110 00111111
Q ss_pred CC-CHHHH----HHHHHHHHHHhCCccccccE-EEE---EEE-----------eCCCCeEEEE------EeecCCCceEE
Q 035902 73 FV-PRISF----INYVDNYVSQMGINPRYHRS-VES---ASY-----------DENAKAWIIV------AKNTALDAYEE 126 (381)
Q Consensus 73 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~-v~~---i~~-----------~~~~~~~~v~------~~~~~~~~~~~ 126 (381)
.. ..+++ .+.+++.+++.+++++.+.. ..+ +.. ..++...+|. ..++ ..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-----~~ 200 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG-----QV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC-----cE
Confidence 11 12222 23334555666777655442 111 000 0001111121 1222 57
Q ss_pred EEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCccee
Q 035902 127 YVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL 206 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~ 206 (381)
++||+||||||+.|..|+++|.+. ++++.++.... .+++++|||+|.+|+|+|..+++.|++|+++.+.+ +++
T Consensus 201 i~ad~lVIATGS~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~-~il 273 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN-RLL 273 (561)
T ss_pred EECCEEEEecCCCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc-ccc
Confidence 999999999999999999988642 34444443322 28999999999999999999999999999999998 677
Q ss_pred chhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--
Q 035902 207 TREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-- 284 (381)
Q Consensus 207 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 284 (381)
|..+.++...+ .+.+++.+|+++.+
T Consensus 274 ~~~d~~i~~~l-----------------------------------------------------~~~L~~~GV~i~~~~~ 300 (561)
T PTZ00058 274 RKFDETIINEL-----------------------------------------------------ENDMKKNNINIITHAN 300 (561)
T ss_pred ccCCHHHHHHH-----------------------------------------------------HHHHHHCCCEEEeCCE
Confidence 76665544443 33346678888877
Q ss_pred cceEeCC---eE--EEcCC-cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccc--
Q 035902 285 ITSINRN---EV--EFENG-KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRT-- 356 (381)
Q Consensus 285 v~~v~~~---~v--~~~~g-~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-- 356 (381)
+.+++++ ++ .+.++ +++++|.|++|+|++|++..+.. +..++.+++|++.+| +.++|+.|||||+|||++
T Consensus 301 V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l-~~~~~~~~~G~I~VD-e~lqTs~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 301 VEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL-KALNIKTPKGYIKVD-DNQRTSVKHIYAVGDCCMVK 378 (561)
T ss_pred EEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCc-cccceecCCCeEEEC-cCCccCCCCEEEeEeccCcc
Confidence 7777643 23 33343 57999999999999999875543 435555678999998 567899999999999988
Q ss_pred --------------------------------ccc---CccHHHHHHHHHhhhc
Q 035902 357 --------------------------------GLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 357 --------------------------------~~~---~a~~~a~~~a~~i~~~ 375 (381)
... .|..||+.+|++|.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 379 KNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 222 7899999999999864
No 31
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.4e-33 Score=267.33 Aligned_cols=304 Identities=18% Similarity=0.197 Sum_probs=199.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCeeeecCCcc-c---ccCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMKLHLAKQF-C---ELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 77 (381)
++||+|||||++|+.+|..|++.|.+|+|||+...+||.|.+. +++...+...... . ..+.+......+. ....
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~-~~~~ 94 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS-IDRG 94 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc-cCHH
Confidence 4899999999999999999999999999999988899987643 3332211111000 0 0010000000011 1222
Q ss_pred HHHHHHHH------------HHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDN------------YVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~------------~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+...... .++.. ++++..+. ..+.+ .+.+.|...++ +..++.||+||||||+.|..|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~----a~f~~-~~~v~v~~~~g---~~~~~~~d~lViATGs~p~~p~ 166 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGY----ARFKD-GNTLVVRLHDG---GERVLAADRCLIATGSTPTIPP 166 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE----EEEec-CCEEEEEeCCC---ceEEEEeCEEEEecCCCCCCCC
Confidence 22221111 11111 33332221 12222 25566665544 2257999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||.+... ..+..+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|. .+++..+.++...+
T Consensus 167 i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~~~~~~l------- 234 (479)
T PRK14727 167 IPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDPLLGETL------- 234 (479)
T ss_pred CCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchHHHHHHH-------
Confidence 99875421 2333222222 224799999999999999999999999999999875 45565554433332
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--CeEEEc-CCc
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NEVEFE-NGK 299 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~v~~~-~g~ 299 (381)
.+.+++.+++++.+ ++++.. +.+.+. ++.
T Consensus 235 ----------------------------------------------~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g 268 (479)
T PRK14727 235 ----------------------------------------------TACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG 268 (479)
T ss_pred ----------------------------------------------HHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC
Confidence 33446677888876 666653 333322 234
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++||+..+.. +..++ ++++|++.+| +.++|+.|||||+|||++.+. .|..||+.+|.+|.+.
T Consensus 269 ~i~aD~VlvA~G~~pn~~~l~l-~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 269 ELRAEKLLISTGRHANTHDLNL-EAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred eEEeCEEEEccCCCCCccCCCc-hhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 6899999999999999965433 43566 7788999999 567889999999999997654 8889999999999864
No 32
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=268.18 Aligned_cols=292 Identities=16% Similarity=0.141 Sum_probs=204.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
|++++|||||||+||+.+|..|.+.+.+|+|||+++..- |..+ .+..........++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~ 65 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSIC 65 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhH
Confidence 345899999999999999999987778999999987321 0000 000011122234455
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecC---CCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA---LDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
..++..++.+++++ ...+|++|+.++ +.+.+...+.. ..+..++.||+||+|||+.+..+.+||..+. .+.
T Consensus 66 ~~~~~~~~~~~~~~-i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~---~~~ 139 (424)
T PTZ00318 66 EPVRPALAKLPNRY-LRAVVYDVDFEE--KRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEER---AFF 139 (424)
T ss_pred HHHHHHhccCCeEE-EEEEEEEEEcCC--CEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHc---CCC
Confidence 55566666667654 557899998865 55333211000 0112579999999999999998889987542 111
Q ss_pred cCCCCC----------------CC------CCCCCeEEEEcCCCCHHHHHHHHhh--------------CCCeeEEEEec
Q 035902 158 SSKYEN----------------GG------KFIGKNVLVVGCGNSGMEIAYDLSS--------------CGACTSIVVRG 201 (381)
Q Consensus 158 ~~~~~~----------------~~------~~~~~~v~viG~G~~~~e~a~~l~~--------------~g~~v~~i~r~ 201 (381)
.+...+ .. ....++++|||+|.+|+|+|..|++ .+.+|+++++.
T Consensus 140 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 219 (424)
T PTZ00318 140 LKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG 219 (424)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC
Confidence 111100 00 0123589999999999999999986 36789999998
Q ss_pred CcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEE
Q 035902 202 PVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQV 281 (381)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 281 (381)
+ .++|..+......+ .+.+++.+|++
T Consensus 220 ~-~ll~~~~~~~~~~~-----------------------------------------------------~~~L~~~gV~v 245 (424)
T PTZ00318 220 S-EVLGSFDQALRKYG-----------------------------------------------------QRRLRRLGVDI 245 (424)
T ss_pred C-cccccCCHHHHHHH-----------------------------------------------------HHHHHHCCCEE
Confidence 8 56665443333222 45557789999
Q ss_pred ccC--cceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCC-CCCCcEEEEeccccc
Q 035902 282 FPS--ITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHW-KGENGLYCAGFSRTG 357 (381)
Q Consensus 282 ~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-~~~~~ifa~Gd~~~~ 357 (381)
+.+ |++++++.+.+++|+++++|.+|+++|.+|+. +.. . .++ ++++|++.+| +.++ ++.|||||+|||+..
T Consensus 246 ~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~--~~~-~-~~l~~~~~G~I~Vd-~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 246 RTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGP--LTK-Q-LKVDKTSRGRISVD-DHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred EeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcc--hhh-h-cCCcccCCCcEEeC-CCcccCCCCCEEEEeccccC
Confidence 977 99999999999999999999999999999984 333 3 454 6778999999 3444 689999999999863
Q ss_pred -----cc---CccHHHHHHHHHhhhccccC
Q 035902 358 -----LH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 358 -----~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
+. .|+.||..+|+||.+.+...
T Consensus 321 ~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 321 EERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 21 78999999999999988653
No 33
>PLN02546 glutathione reductase
Probab=100.00 E-value=2.1e-34 Score=274.06 Aligned_cols=299 Identities=15% Similarity=0.192 Sum_probs=200.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC---------CCCCC-CcCCCCCCCee-eecCCcc--------cccCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE---------DCSAS-LWKKRAYDRMK-LHLAKQF--------CELPH 63 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~---------~~~g~-~~~~~~~~~~~-~~~~~~~--------~~~~~ 63 (381)
+|||+||||||+|+.+|..+++.|.+|+|||+. ..+|| +.+..+.+.-. ....... +++..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 489999999999999999999999999999961 34555 33433333211 1110000 01100
Q ss_pred C-CCCCCCCCCCC-HH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 64 M-PFPSRTPTFVP-RI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 64 ~-~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
. ....+|..... .+ .+.+++.+.+++.+++++.+ ++..++. .. |.+ ++ +.+.||+||||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~----~~--V~v-~G-----~~~~~D~LVIATG 225 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP----HT--VDV-DG-----KLYTARNILIAVG 225 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC----CE--EEE-CC-----EEEECCEEEEeCC
Confidence 0 00112222111 11 23345555566667776543 2333322 22 444 33 5799999999999
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 138 ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
+.|..|++||.+. +.+....... ...+++++|||+|.+|+|+|..++..+.+|+++.|.+ .+++..+.++...+
T Consensus 226 s~p~~P~IpG~~~----v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d~~~~~~l 299 (558)
T PLN02546 226 GRPFIPDIPGIEH----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFDEEVRDFV 299 (558)
T ss_pred CCCCCCCCCChhh----ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccCHHHHHHH
Confidence 9999999998753 2222222222 2357999999999999999999999999999999988 66666554444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC---Ce
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR---NE 292 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~---~~ 292 (381)
.+.+++.+|+++.+ +.++.. +.
T Consensus 300 -----------------------------------------------------~~~L~~~GV~i~~~~~v~~i~~~~~g~ 326 (558)
T PLN02546 300 -----------------------------------------------------AEQMSLRGIEFHTEESPQAIIKSADGS 326 (558)
T ss_pred -----------------------------------------------------HHHHHHCCcEEEeCCEEEEEEEcCCCE
Confidence 33446678888877 667653 22
Q ss_pred E--EEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHH
Q 035902 293 V--EFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAK 366 (381)
Q Consensus 293 v--~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~ 366 (381)
+ .+.+++...+|.+++++|++|+...+.. +..++ ++++|++.+| +.++|+.|||||+|||.+... .|..||+
T Consensus 327 v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~l-e~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~ 404 (558)
T PLN02546 327 LSLKTNKGTVEGFSHVMFATGRKPNTKNLGL-EEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINLTPVALMEGG 404 (558)
T ss_pred EEEEECCeEEEecCEEEEeeccccCCCcCCh-hhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCcccHHHHHHHHH
Confidence 3 3344544569999999999999965432 33666 7788999999 567789999999999987654 8889999
Q ss_pred HHHHHhhhc
Q 035902 367 NIANDINLA 375 (381)
Q Consensus 367 ~~a~~i~~~ 375 (381)
.+|++|.+.
T Consensus 405 ~~a~~i~g~ 413 (558)
T PLN02546 405 ALAKTLFGN 413 (558)
T ss_pred HHHHHHcCC
Confidence 999999863
No 34
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=5.2e-33 Score=262.50 Aligned_cols=308 Identities=15% Similarity=0.153 Sum_probs=206.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCee-eecCCcc--------cccCCC---CCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMK-LHLAKQF--------CELPHM---PFPSRT 70 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~-~~~~~~~--------~~~~~~---~~~~~~ 70 (381)
++|+|||||++|+.+|..++++|.+|+|||++. +||.. +..+.+.-. ....... +++... ....++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 589999999999999999999999999999875 66633 333332211 1110000 000000 000011
Q ss_pred CCCCC-HHH----HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 71 PTFVP-RIS----FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 71 ~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
+.... ... +.+.+++.+++++++++.+. +..++...+.....|...++ +.+.+.||+||+|||+.|..|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g---~~~~~~~d~lViATGs~p~~~p~ 156 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADG---GEETLDADVVLIATGASPRILPT 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCC---ceEEEecCEEEEcCCCCCCCCCC
Confidence 11100 111 12344555666788875543 43333111124555555443 22479999999999999886654
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
++... ..+++..+..+.. ..+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.+....+
T Consensus 157 ~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~l-------- 224 (466)
T PRK07845 157 AEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDADAAEVL-------- 224 (466)
T ss_pred CCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHHHHHHH--------
Confidence 43321 1244544443332 347899999999999999999999999999999988 67776655544333
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEcCCc
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFENGK 299 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~~g~ 299 (381)
.+.+++.+|+++.+ +++++. ++ +.+.+|+
T Consensus 225 ---------------------------------------------~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~ 259 (466)
T PRK07845 225 ---------------------------------------------EEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR 259 (466)
T ss_pred ---------------------------------------------HHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc
Confidence 33446678888877 777752 33 4556888
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++++|++|+...+.. ++.++ ++++|++.+| +.++|+.|||||+||+++.+. .|..||..++++|.+.
T Consensus 260 ~l~~D~vl~a~G~~pn~~~l~l-~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 260 TVEGSHALMAVGSVPNTAGLGL-EEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred EEEecEEEEeecCCcCCCCCCc-hhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 9999999999999999975433 43666 7788999998 567789999999999997654 8999999999999863
No 35
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=6.5e-34 Score=267.08 Aligned_cols=297 Identities=15% Similarity=0.142 Sum_probs=195.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCC-eeeecCCcccccCC---CCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDR-MKLHLAKQFCELPH---MPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (381)
+||++||||||+|..+|.. ..|.+|+|||+.. +|| +.+..+.+. +.......+..... +-.... ..-....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 4899999999999998876 4699999999864 555 444444332 21111111110000 000000 0011222
Q ss_pred HHHHHHHHH-------------HHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDNY-------------VSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~~-------------~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.++.+.. +++.+++++.+. ...+ + .+. |.+.++ +.++||+||+|||+.|..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~--~~~--V~v~~g-----~~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--G--PKT--LRTGDG-----EEITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--c--CCE--EEECCC-----CEEEeCEEEEcCCCCCCCCC
Confidence 333322222 233455544332 1111 1 233 666554 47999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
++|.+.. .+.++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+.+
T Consensus 145 i~g~~~~--~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l~~----- 215 (451)
T PRK07846 145 VIADSGV--RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERFTE----- 215 (451)
T ss_pred CCCcCCc--cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHHHH-----
Confidence 9886532 1233333322 22357999999999999999999999999999999998 6666555443322211
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENG 298 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g 298 (381)
+.+.+++++.+ +++++.+ + +.+.+|
T Consensus 216 -------------------------------------------------l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g 246 (451)
T PRK07846 216 -------------------------------------------------LASKRWDVRLGRNVVGVSQDGSGVTLRLDDG 246 (451)
T ss_pred -------------------------------------------------HHhcCeEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 12235777766 7777543 3 456678
Q ss_pred cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 299 KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 299 ~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
+++++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++|+.|||||+|||++... .|..||+.+++||.+
T Consensus 247 ~~i~~D~vl~a~G~~pn~~~l~~-~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 247 STVEADVLLVATGRVPNGDLLDA-AAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cEeecCEEEEEECCccCccccCc-hhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcC
Confidence 89999999999999999965433 44666 7788999999 567799999999999997644 889999999999985
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 325 ~ 325 (451)
T PRK07846 325 P 325 (451)
T ss_pred C
Confidence 4
No 36
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1e-33 Score=280.60 Aligned_cols=284 Identities=20% Similarity=0.198 Sum_probs=208.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPR 76 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (381)
|+.++|+|||+|+||+.+|..|+++ +.+|+||++++.++ |..+.+.. .+.. ...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--------------~~~~-~~~ 58 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--------------YFSH-HTA 58 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--------------hHcC-CCH
Confidence 6667999999999999999999865 46999999998653 22111110 0011 112
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCccee
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYM 156 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~ 156 (381)
+++.....+++++.+++++.++.|++++... . .|.+.++ ..+.||+||+|||+.|..|++||.+.. + ++
T Consensus 59 ~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~--~V~~~~G-----~~i~yD~LVIATGs~p~~p~ipG~~~~-~-v~ 127 (847)
T PRK14989 59 EELSLVREGFYEKHGIKVLVGERAITINRQE--K--VIHSSAG-----RTVFYDKLIMATGSYPWIPPIKGSETQ-D-CF 127 (847)
T ss_pred HHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--c--EEEECCC-----cEEECCEEEECCCCCcCCCCCCCCCCC-C-eE
Confidence 2333333455667799999999999998754 3 3676665 679999999999999999999997642 1 22
Q ss_pred ecCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHH
Q 035902 157 HSSKYENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIV 230 (381)
Q Consensus 157 ~~~~~~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~ 230 (381)
......+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++. .+.+....+
T Consensus 128 ~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~~~~~~l------------- 193 (847)
T PRK14989 128 VYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQMGGEQL------------- 193 (847)
T ss_pred EECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCHHHHHHH-------------
Confidence 222221111 1257899999999999999999999999999999988 55553 233322222
Q ss_pred HHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------eEEEcCCcEee
Q 035902 231 VMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------EVEFENGKIEE 302 (381)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~v~~~~g~~~~ 302 (381)
.+.+++.+|+++.+ ++++..+ .+.+.+|++++
T Consensus 194 ----------------------------------------~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~ 233 (847)
T PRK14989 194 ----------------------------------------RRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELE 233 (847)
T ss_pred ----------------------------------------HHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEE
Confidence 44456778888887 7777532 46788999999
Q ss_pred ccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc-------CccHHHHHHHHHhhh
Q 035902 303 FEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------GISIDAKNIANDINL 374 (381)
Q Consensus 303 ~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i~~ 374 (381)
+|.||+|+|++|+.. ++. . .++ ++++|++.|| +.++|+.|||||+|||+.... .|..||+.+|++|.+
T Consensus 234 ~D~Vv~A~G~rPn~~-L~~-~-~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 234 VDFIVFSTGIRPQDK-LAT-Q-CGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred cCEEEECCCcccCch-HHh-h-cCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcC
Confidence 999999999999986 333 3 666 7888999999 577889999999999986421 678899999999987
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 310 ~ 310 (847)
T PRK14989 310 S 310 (847)
T ss_pred C
Confidence 4
No 37
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=268.30 Aligned_cols=306 Identities=16% Similarity=0.199 Sum_probs=200.0
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--------CCCCC-cCCCCCCCeeeecCCcc-ccc----CCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--------CSASL-WKKRAYDRMKLHLAKQF-CEL----PHMP 65 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--------~~g~~-~~~~~~~~~~~~~~~~~-~~~----~~~~ 65 (381)
|+ .|||+||||||||+.||..++++|.+|+|||+.. .+||+ .+..+++.-.+...... ... ..+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 44 4899999999999999999999999999999631 36773 44444442111000000 000 0011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEE-------EeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESAS-------YDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-------~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
. ..+...+..++.++++...+.++..+....++..++ ..+ ... |.+.+. ++...++||+||||||+
T Consensus 82 ~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~-~~~--v~v~~~--~~~~~i~~d~lIIATGs 154 (499)
T PTZ00052 82 W--KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD-EHT--VSYGDN--SQEETITAKYILIATGG 154 (499)
T ss_pred C--CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc-CCE--EEEeeC--CCceEEECCEEEEecCC
Confidence 0 001123455666666666655544333222221111 111 123 544331 12257999999999999
Q ss_pred CCCCCC-CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 139 NGLIPE-VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 139 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
.|..|. +||.+.. ...+.+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.+. .+++..+.++...+
T Consensus 155 ~p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~~~~~~l 228 (499)
T PTZ00052 155 RPSIPEDVPGAKEY---SITSDDIFSL-SKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDRQCSEKV 228 (499)
T ss_pred CCCCCCCCCCccce---eecHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCCHHHHHHH
Confidence 998874 8886532 2333333222 224789999999999999999999999999999874 34565555444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-- 291 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-- 291 (381)
.+.+++.+|+++.+ +.++.. +
T Consensus 229 -----------------------------------------------------~~~l~~~GV~i~~~~~v~~v~~~~~~~ 255 (499)
T PTZ00052 229 -----------------------------------------------------VEYMKEQGTLFLEGVVPINIEKMDDKI 255 (499)
T ss_pred -----------------------------------------------------HHHHHHcCCEEEcCCeEEEEEEcCCeE
Confidence 33445667888877 556653 2
Q ss_pred eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-cc---CccHHHH
Q 035902 292 EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-LH---GISIDAK 366 (381)
Q Consensus 292 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-~~---~a~~~a~ 366 (381)
.+.+.+|+++++|.|++++|++||++.+.. +..++ ++++|++.++. . +|+.|+|||+|||+.. +. .|..||+
T Consensus 256 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l-~~~g~~~~~~G~ii~~~-~-~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~ 332 (499)
T PTZ00052 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNL-NAIGVHVNKSNKIIAPN-D-CTNIPNIFAVGDVVEGRPELTPVAIKAGI 332 (499)
T ss_pred EEEECCCCEEEcCEEEEeeCCCCCccccCc-hhcCcEECCCCCEeeCC-C-cCCCCCEEEEEEecCCCcccHHHHHHHHH
Confidence 356678888999999999999999965432 33666 77888866652 3 8899999999999853 32 8899999
Q ss_pred HHHHHhhhc
Q 035902 367 NIANDINLA 375 (381)
Q Consensus 367 ~~a~~i~~~ 375 (381)
.+|++|.+.
T Consensus 333 ~aa~ni~g~ 341 (499)
T PTZ00052 333 LLARRLFKQ 341 (499)
T ss_pred HHHHHHhCC
Confidence 999999763
No 38
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.5e-33 Score=265.72 Aligned_cols=310 Identities=18% Similarity=0.188 Sum_probs=203.8
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCee-eecCCccc--------ccCCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMK-LHLAKQFC--------ELPHMPFPSR 69 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 69 (381)
|+ +|||+||||||||+++|..|++.|.+|+|||+. .+||++.. .+.+.-. ......+. +........+
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 65 699999999999999999999999999999996 67886543 3333211 11110000 1110000011
Q ss_pred CCCCC-CHHHHHHHH----HHHHHHhCCccccccEEEEEEEe---CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 70 TPTFV-PRISFINYV----DNYVSQMGINPRYHRSVESASYD---ENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 70 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++... ..+++.+.+ .+.+++.+++++.+ ++..++.. ...+.+.|.+.++ +...+.||+||+|||+.|.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g---~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETG---ENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCC---ceEEEEcCEEEEeCCCCCC
Confidence 11111 112222222 34455667776654 35455432 1123555665443 2257999999999999986
Q ss_pred CCCCCCCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhh
Q 035902 142 IPEVPGLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF 220 (381)
Q Consensus 142 ~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~ 220 (381)
.+ |+.+ ..+. +++..+.... ...+++++|||+|++|+|+|..|++.|.+|+++.|.+ .++|..+.++...+
T Consensus 156 ~~--p~~~-~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~~~~~~l--- 227 (472)
T PRK05976 156 EL--PGLP-FDGEYVISSDEALSL-ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDAELSKEV--- 227 (472)
T ss_pred CC--CCCC-CCCceEEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCHHHHHHH---
Confidence 54 3332 1222 3443333332 2347999999999999999999999999999999998 67776655444333
Q ss_pred CcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe---CCeE--
Q 035902 221 LPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN---RNEV-- 293 (381)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~---~~~v-- 293 (381)
.+.+++.+|+++.+ +++++ .+++
T Consensus 228 --------------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~ 257 (472)
T PRK05976 228 --------------------------------------------------ARLLKKLGVRVVTGAKVLGLTLKKDGGVLI 257 (472)
T ss_pred --------------------------------------------------HHHHHhcCCEEEeCcEEEEEEEecCCCEEE
Confidence 33446678888877 77775 3333
Q ss_pred -EEcCC--cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 294 -EFENG--KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 294 -~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
.+.+| +++++|.+++|+|.+|+++.+.. +..++...+|++.++ +.++++.||||++||+.+.+. .|..+|..
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l-~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~ 335 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGL-ENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAMAEGEM 335 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCCCCCCc-hhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHH
Confidence 23456 36899999999999999865433 334553457889988 566788999999999987643 89999999
Q ss_pred HHHHhhhc
Q 035902 368 IANDINLA 375 (381)
Q Consensus 368 ~a~~i~~~ 375 (381)
+|++|.+.
T Consensus 336 aa~~i~g~ 343 (472)
T PRK05976 336 AAEHIAGK 343 (472)
T ss_pred HHHHHcCC
Confidence 99999763
No 39
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.8e-33 Score=263.39 Aligned_cols=287 Identities=17% Similarity=0.200 Sum_probs=198.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+|+|||||+||+++|..|++.+ .+|+|||+++..+ |... ..+.+. ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe----ccccCCHHHhhcC
Confidence 6999999999999999999875 4899999987543 1100 000000 0011222344444
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
..+.+++++++++++++|.+++.++ +. +.+.+...+....+.||+||+|||+.|..|+++|.+.. .+++.....
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~--~v~~~~~~~ 135 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KT--ITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLE--NVYTLKSME 135 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CE--EEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCC--CEEEECCHH
Confidence 4555667799988899999998765 44 44443111122234499999999999999988887531 234333221
Q ss_pred CC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHHh
Q 035902 163 NG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVMLS 234 (381)
Q Consensus 163 ~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (381)
+. ....+++++|+|+|.+|+|+|..+.+.|.+|+++.+.+ .+++. .+.++...
T Consensus 136 ~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~------------------ 196 (444)
T PRK09564 136 DGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFDKEITDV------------------ 196 (444)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcCHHHHHH------------------
Confidence 11 12247899999999999999999999999999999887 55442 22222222
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe---EEEcCCcEeeccEEEEe
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE---VEFENGKIEEFEAIIFA 309 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~---v~~~~g~~~~~D~vi~a 309 (381)
+.+.+++.+++++.+ +.+++++. ....++.++++|.+++|
T Consensus 197 -----------------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a 241 (444)
T PRK09564 197 -----------------------------------MEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVA 241 (444)
T ss_pred -----------------------------------HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEEC
Confidence 134446667888776 77776442 12234557999999999
Q ss_pred cCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhhc
Q 035902 310 TGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~~ 375 (381)
+|++|+.+. +. . .++ ++++|++.+| +.++++.|||||+|||+..+ ..|..||+.+|+||.+.
T Consensus 242 ~G~~p~~~~-l~-~-~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~ 317 (444)
T PRK09564 242 TGVKPNTEF-LE-D-TGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGR 317 (444)
T ss_pred cCCCcCHHH-HH-h-cCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCC
Confidence 999999854 44 3 666 6778999999 56678999999999998631 27889999999999874
No 40
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=6.6e-33 Score=255.82 Aligned_cols=281 Identities=16% Similarity=0.240 Sum_probs=199.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+ ++|+|||||+||+.+|..|++.+ .+|+||++++... |... .+ +..+.......+
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~------------~l--~~~~~~~~~~~~ 58 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKP------------DL--SHVFSQGQRADD 58 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcC------------cC--cHHHhCCCCHHH
Confidence 63 68999999999999999998864 5899999987322 1000 00 001111222334
Q ss_pred HHH-HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 79 FIN-YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
+.. ...+++++++++++.+++|++++.+. .. +.++ + ..+.||+||+|||+.|..|+++|.+. +++
T Consensus 59 ~~~~~~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~-~-----~~~~yd~LVlATG~~~~~p~i~G~~~----v~~ 124 (377)
T PRK04965 59 LTRQSAGEFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQ-G-----NQWQYDKLVLATGASAFVPPIPGREL----MLT 124 (377)
T ss_pred hhcCCHHHHHHhCCCEEECCCEEEEEECCC--CE--EEEC-C-----eEEeCCEEEECCCCCCCCCCCCCCce----EEE
Confidence 443 24566677899999999999998754 33 5543 3 57999999999999999999998653 233
Q ss_pred cCCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHHH
Q 035902 158 SSKYEN-----GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIVV 231 (381)
Q Consensus 158 ~~~~~~-----~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~~ 231 (381)
.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++.. +.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~~~~~~~---------------- 187 (377)
T PRK04965 125 LNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLMPPEVSS---------------- 187 (377)
T ss_pred ECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhCCHHHHH----------------
Confidence 222111 111257899999999999999999999999999999988 554432 111111
Q ss_pred HHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccE
Q 035902 232 MLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEA 305 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~ 305 (381)
.+.+.+++.+++++.+ +++++.+ .+.+.+|+++++|.
T Consensus 188 -------------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~ 230 (377)
T PRK04965 188 -------------------------------------RLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDA 230 (377)
T ss_pred -------------------------------------HHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCE
Confidence 1244456677888766 7777654 36678899999999
Q ss_pred EEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------cCccHHHHHHHHHhhhcc
Q 035902 306 IIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------HGISIDAKNIANDINLAL 376 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------~~a~~~a~~~a~~i~~~l 376 (381)
+|+|+|.+|++. +.. . .++-...| +.+| +.++++.|||||+|||+... ..|..||+.+|+||.+.-
T Consensus 231 vI~a~G~~p~~~-l~~-~-~gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 231 VIAAAGLRPNTA-LAR-R-AGLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred EEECcCCCcchH-HHH-H-CCCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 999999999985 333 2 55533356 7787 56778899999999997532 268899999999998754
No 41
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.6e-33 Score=263.72 Aligned_cols=310 Identities=15% Similarity=0.176 Sum_probs=202.7
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEec------CCCCCCCcCC-CCCCC-eeeecCCccc---------ccC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILER------EDCSASLWKK-RAYDR-MKLHLAKQFC---------ELP 62 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~------~~~~g~~~~~-~~~~~-~~~~~~~~~~---------~~~ 62 (381)
|+ +||++||||||||++||..+++.|.+|+|||+ ...+||.+.+ .+++. ........+. +..
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 53 58999999999999999999999999999998 3567776543 22222 1111100000 111
Q ss_pred CCCCCCCCCCCCC-HHHHH----HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 63 HMPFPSRTPTFVP-RISFI----NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 63 ~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
....+.+++.... .+++. ..++++.+..+++++.+ ++..++... ..+.|.+..+ +...++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~--~~~~v~v~~~---~~~~~~~d~lViATG 154 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTD--AGYEIKVTGE---DETVITAKHVIIATG 154 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCC--CCCEEEEecC---CCeEEEeCEEEEeCC
Confidence 0000111111111 12222 23344455557665543 344444333 3455666432 115799999999999
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 138 ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
+.|..++ +.+ +.+..++.++........+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 155 s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~ 230 (475)
T PRK06327 155 SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADEQVAKEA 230 (475)
T ss_pred CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCHHHHHHH
Confidence 9986543 322 1222233333222223357999999999999999999999999999999988 66665544433333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e-
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E- 292 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~- 292 (381)
.+.+++.+++++.+ |++++.+ .
T Consensus 231 -----------------------------------------------------~~~l~~~gi~i~~~~~v~~i~~~~~~v 257 (475)
T PRK06327 231 -----------------------------------------------------AKAFTKQGLDIHLGVKIGEIKTGGKGV 257 (475)
T ss_pred -----------------------------------------------------HHHHHHcCcEEEeCcEEEEEEEcCCEE
Confidence 33345567888876 7777643 3
Q ss_pred -EEEcC--C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccH
Q 035902 293 -VEFEN--G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISI 363 (381)
Q Consensus 293 -v~~~~--g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~ 363 (381)
+.+.+ | +++++|.+++++|++|+.+.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..
T Consensus 258 ~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~-~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~~~~~A~~ 335 (475)
T PRK06327 258 SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGL-EAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVRGPMLAHKAEE 335 (475)
T ss_pred EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCc-HhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccCCcchHHHHHH
Confidence 34444 3 47999999999999999875444 44566 7788999998 456789999999999987654 8999
Q ss_pred HHHHHHHHhhhc
Q 035902 364 DAKNIANDINLA 375 (381)
Q Consensus 364 ~a~~~a~~i~~~ 375 (381)
||..+|++|.+.
T Consensus 336 ~G~~aa~~i~g~ 347 (475)
T PRK06327 336 EGVAVAERIAGQ 347 (475)
T ss_pred HHHHHHHHHcCC
Confidence 999999999864
No 42
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=9.2e-33 Score=260.83 Aligned_cols=304 Identities=14% Similarity=0.148 Sum_probs=197.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--------CCCCCc-CCCCCCCeeeecCCc---------ccccCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--------CSASLW-KKRAYDRMKLHLAKQ---------FCELPHM 64 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--------~~g~~~-~~~~~~~~~~~~~~~---------~~~~~~~ 64 (381)
+||++||||||+|+.+|..+++.|.+|++||+.. .+||.+ +..+++.-.+..... .+++...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 467743 334444222111100 0111000
Q ss_pred C-CCCCCCCCCC-HHHHH----HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 65 P-FPSRTPTFVP-RISFI----NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 65 ~-~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
. ...+++.... ..++. +.....++..+++++.+. .. +.+ .+...|...++ +...++||+||+|||+
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~---f~~-~~~v~v~~~~g---~~~~~~~d~lVIATGs 153 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AE---FVD-KHRIKATNKKG---KEKIYSAERFLIATGE 153 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EE---EcC-CCEEEEeccCC---CceEEEeCEEEEecCC
Confidence 0 0011111111 11121 122233444566654322 21 112 13322322222 2357999999999999
Q ss_pred CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHH
Q 035902 139 NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLL 218 (381)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~ 218 (381)
.|..|++||.+.. .+++.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.| + .++|..+.++...+.
T Consensus 154 ~p~~p~ipG~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~-~~l~~~d~~~~~~l~ 227 (484)
T TIGR01438 154 RPRYPGIPGAKEL---CITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S-ILLRGFDQDCANKVG 227 (484)
T ss_pred CCCCCCCCCccce---eecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c-ccccccCHHHHHHHH
Confidence 9999999987542 23333333322 2568999999999999999999999999999997 4 566766665554443
Q ss_pred hhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--e
Q 035902 219 KFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N--E 292 (381)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~--~ 292 (381)
+ .+++.+|+++.+ +.++.. + .
T Consensus 228 ~-----------------------------------------------------~L~~~gV~i~~~~~v~~v~~~~~~~~ 254 (484)
T TIGR01438 228 E-----------------------------------------------------HMEEHGVKFKRQFVPIKVEQIEAKVK 254 (484)
T ss_pred H-----------------------------------------------------HHHHcCCEEEeCceEEEEEEcCCeEE
Confidence 3 345667888877 556553 2 2
Q ss_pred EEEcCC---cEeeccEEEEecCCCCCcchhccccCCcc-ccc-CCCCCCCCCCCCCCCCcEEEEeccccc-cc---CccH
Q 035902 293 VEFENG---KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDE-YGMPKRNCPNHWKGENGLYCAGFSRTG-LH---GISI 363 (381)
Q Consensus 293 v~~~~g---~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~ifa~Gd~~~~-~~---~a~~ 363 (381)
+.+.++ +++++|.+++|+|++||+..+.. +..++ ++. +|++.+| +.++|+.|+|||+|||+.. .. .|..
T Consensus 255 v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l-~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~ 332 (484)
T TIGR01438 255 VTFTDSTNGIEEEYDTVLLAIGRDACTRKLNL-ENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQELTPVAIQ 332 (484)
T ss_pred EEEecCCcceEEEeCEEEEEecCCcCCCcCCc-ccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCCccchHHHHH
Confidence 455555 37999999999999999975433 44666 554 5889998 5677899999999999853 22 8899
Q ss_pred HHHHHHHHhhhc
Q 035902 364 DAKNIANDINLA 375 (381)
Q Consensus 364 ~a~~~a~~i~~~ 375 (381)
||+.+|++|.+.
T Consensus 333 ~g~~aa~~i~~~ 344 (484)
T TIGR01438 333 AGRLLAQRLFSG 344 (484)
T ss_pred HHHHHHHHHhcC
Confidence 999999999863
No 43
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=6.2e-33 Score=257.36 Aligned_cols=285 Identities=14% Similarity=0.176 Sum_probs=195.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+.++|+|||||+||++||..|++.+. +|+||+++...+ |.... .+..+...... . ......
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~--l~~~~~~~~~~----~-~~~~~~-- 64 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPP--LSKSMLLEDSP----Q-LQQVLP-- 64 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCC--CCHHHHCCCCc----c-ccccCC--
Confidence 777899999999999999999999876 899999987543 11000 00000000000 0 000000
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
.+...+.+++++.++.|..++.+. .. |.+.++ ..+.||+||+|||+.|..+++++... ..++..
T Consensus 65 -----~~~~~~~~i~~~~g~~V~~id~~~--~~--v~~~~g-----~~~~yd~LViATGs~~~~~p~~~~~~--~~v~~~ 128 (396)
T PRK09754 65 -----ANWWQENNVHLHSGVTIKTLGRDT--RE--LVLTNG-----ESWHWDQLFIATGAAARPLPLLDALG--ERCFTL 128 (396)
T ss_pred -----HHHHHHCCCEEEcCCEEEEEECCC--CE--EEECCC-----CEEEcCEEEEccCCCCCCCCCCCcCC--CCEEec
Confidence 122345689999999999998754 33 666665 57999999999999987766654321 123332
Q ss_pred CCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHHHH
Q 035902 159 SKYENG-----GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 159 ~~~~~~-----~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++++. .......
T Consensus 129 ~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~---------------- 191 (396)
T PRK09754 129 RHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAPPPVQRY---------------- 191 (396)
T ss_pred CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcCHHHHHH----------------
Confidence 211111 11247899999999999999999999999999999988 554432 1111111
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC---eEEEcCCcEeeccEEE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN---EVEFENGKIEEFEAII 307 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~---~v~~~~g~~~~~D~vi 307 (381)
+.+.+++.+|+++.+ +++++.+ .+.+.+|+++++|.+|
T Consensus 192 -------------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv 234 (396)
T PRK09754 192 -------------------------------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVI 234 (396)
T ss_pred -------------------------------------HHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEE
Confidence 234446678888876 7777643 3567889999999999
Q ss_pred EecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc------------cCccHHHHHHHHHhhhc
Q 035902 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~------------~~a~~~a~~~a~~i~~~ 375 (381)
+++|.+|+.. ++. . .++-. ++.+.+| +.++++.|||||+|||+... ..|..||+.+|+||.+.
T Consensus 235 ~a~G~~pn~~-l~~-~-~gl~~-~~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~ 309 (396)
T PRK09754 235 YGIGISANDQ-LAR-E-ANLDT-ANGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGL 309 (396)
T ss_pred ECCCCChhhH-HHH-h-cCCCc-CCCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCC
Confidence 9999999975 443 3 55522 3558888 56778999999999997421 26899999999999875
Q ss_pred c
Q 035902 376 L 376 (381)
Q Consensus 376 l 376 (381)
.
T Consensus 310 ~ 310 (396)
T PRK09754 310 P 310 (396)
T ss_pred C
Confidence 4
No 44
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.6e-32 Score=260.25 Aligned_cols=302 Identities=17% Similarity=0.200 Sum_probs=198.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeeeecCCccc----ccCCCCCCCCCCCCCCHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKLHLAKQFC----ELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 78 (381)
|||+||||||+|+++|..|++.|.+|+|||+ +.+||.|.+ .+++...+......+ ....+..... ....+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHHH
Confidence 8999999999999999999999999999999 778886543 233321111000000 0000100000 00112222
Q ss_pred HHH-----------HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC-
Q 035902 79 FIN-----------YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP- 146 (381)
Q Consensus 79 ~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~- 146 (381)
+.+ .+....++.+++++.+. +..+ + .+.+.+...++ ...++||+||+|||+.|..|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~--~~~~~v~~~~g----~~~~~~d~lVlAtG~~p~~~~~~~ 150 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFL--D--PGTVLVTGENG----EETLTAKNIIIATGSRPRSLPGPF 150 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--c--CCEEEEecCCC----cEEEEeCEEEEcCCCCCCCCCCCC
Confidence 222 22334445566655433 2222 2 24444554332 15799999999999999887765
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
+... ..+.+..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 151 ~~~~--~~~~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~--------- 217 (461)
T TIGR01350 151 DFDG--EVVITSTGALN-LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDAEVSKVV--------- 217 (461)
T ss_pred CCCC--ceEEcchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCHHHHHHH---------
Confidence 3221 11333332222 22357899999999999999999999999999999988 66665444333322
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--CeE--EEcCC--
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NEV--EFENG-- 298 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~v--~~~~g-- 298 (381)
.+.+++.+++++.+ +.+++. +++ .+.+|
T Consensus 218 --------------------------------------------~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~ 253 (461)
T TIGR01350 218 --------------------------------------------AKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGET 253 (461)
T ss_pred --------------------------------------------HHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcE
Confidence 33446667888877 776653 344 33456
Q ss_pred cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 299 KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 299 ~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
+++++|.+++|+|.+|+...++. +..++ ++.+|++.+| +.++++.|+||++|||...+. .|..||+.+|++|.+
T Consensus 254 ~~i~~D~vi~a~G~~p~~~~l~~-~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 254 ETLTGEKVLVAVGRKPNTEGLGL-ENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred EEEEeCEEEEecCCcccCCCCCc-HhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 57999999999999999864333 33566 6788999998 567788999999999987644 899999999999986
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 332 ~ 332 (461)
T TIGR01350 332 K 332 (461)
T ss_pred C
Confidence 4
No 45
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-32 Score=259.01 Aligned_cols=277 Identities=19% Similarity=0.254 Sum_probs=190.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||+++|..|+++|++|+|||+.+.+||.+.. +++.+. .+.+++..+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~--------l~~~~~~~~ 196 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY---------------GIPEFR--------LPKETVVKK 196 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee---------------cCCCcc--------CCccHHHHH
Confidence 378999999999999999999999999999998888875431 111111 112346666
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.++++++++++++.+. .. +...+. ...+.||.||+|||+. |+.+++||.+. .+ +++..++
T Consensus 197 ~~~~~~~~gv~i~~~~~v~--------~~--v~~~~~----~~~~~~d~viiAtGa~~~~~l~ipG~~~-~g-V~~~~~~ 260 (464)
T PRK12831 197 EIENIKKLGVKIETNVVVG--------KT--VTIDEL----LEEEGFDAVFIGSGAGLPKFMGIPGENL-NG-VFSANEF 260 (464)
T ss_pred HHHHHHHcCCEEEcCCEEC--------Cc--CCHHHH----HhccCCCEEEEeCCCCCCCCCCCCCcCC-cC-cEEHHHH
Confidence 6677778899988887552 11 222221 1245699999999994 88888998753 22 3322221
Q ss_pred C-------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 162 E-------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 162 ~-------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
. ......+++++|||+|.+|+|+|..+.++|.+|++++|++...+|....+
T Consensus 261 l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e---------------- 324 (464)
T PRK12831 261 LTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE---------------- 324 (464)
T ss_pred HHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH----------------
Confidence 1 11224689999999999999999999999999999998763222221111
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEEc----
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEFE---- 296 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~~---- 296 (381)
.+.+.+.+|+++.. +.++.. + ++.+.
T Consensus 325 ------------------------------------------~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 362 (464)
T PRK12831 325 ------------------------------------------VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL 362 (464)
T ss_pred ------------------------------------------HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEe
Confidence 11122334444433 333321 1 11110
Q ss_pred --------------CC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 297 --------------NG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 297 --------------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
+| .++++|.||+|+|+.|+.. ++. +..++ ++++|++.++...++|+.|+|||+||++.++.
T Consensus 363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~-~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~ 440 (464)
T PRK12831 363 GEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL-ISS-TTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA 440 (464)
T ss_pred cCcCCCCCccceecCCceEEEECCEEEECCCCCCChh-hhc-ccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch
Confidence 22 2699999999999999985 333 32455 67789999983337799999999999988765
Q ss_pred ---CccHHHHHHHHHhhhcccc
Q 035902 360 ---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~l~~ 378 (381)
.|+.+|+.+|.+|+.+|..
T Consensus 441 ~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 441 TVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999865
No 46
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.7e-32 Score=257.43 Aligned_cols=270 Identities=20% Similarity=0.235 Sum_probs=187.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.. ++ +.+....++...
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---------------gi---------p~~~~~~~~~~~ 188 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY---------------GI---------PEFRLPKEIVVT 188 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee---------------cC---------CCccCCHHHHHH
Confidence 479999999999999999999999999999999877765421 11 111112355555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC-CCCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE-NGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~-~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.++++++++++++.+. .. +.+.+. ...||+||+|||+ .|..|.+||.+. .+ +++..++
T Consensus 189 ~~~~l~~~gv~~~~~~~v~--------~~--v~~~~~------~~~yd~viiAtGa~~p~~~~ipG~~~-~g-v~~~~~~ 250 (449)
T TIGR01316 189 EIKTLKKLGVTFRMNFLVG--------KT--ATLEEL------FSQYDAVFIGTGAGLPKLMNIPGEEL-CG-VYSANDF 250 (449)
T ss_pred HHHHHHhCCcEEEeCCccC--------Cc--CCHHHH------HhhCCEEEEeCCCCCCCcCCCCCCCC-CC-cEEHHHH
Confidence 5566677788888776441 11 333322 2469999999998 588888888652 22 3332221
Q ss_pred C--------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 162 E--------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 162 ~--------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
. ......+++++|||+|.+|+|+|..+.++|.+|+++.|++....+..
T Consensus 251 l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~------------------ 312 (449)
T TIGR01316 251 LTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR------------------ 312 (449)
T ss_pred HHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC------------------
Confidence 1 01123579999999999999999999999999999999862111110
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------eEEEc---
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------EVEFE--- 296 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~v~~~--- 296 (381)
....+.+++.+|+++.. +.++..+ ++.+.
T Consensus 313 ----------------------------------------~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~ 352 (449)
T TIGR01316 313 ----------------------------------------VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMD 352 (449)
T ss_pred ----------------------------------------HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEE
Confidence 01123344556666654 4444321 12221
Q ss_pred ------CC-----------cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 297 ------NG-----------KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 297 ------~g-----------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
+| +++++|.||+|+|+.|+.. ++. . .++ ++++|++.+| +.++|+.|||||+||+++++
T Consensus 353 ~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~-~l~-~-~gl~~~~~G~i~vd-~~~~Ts~~~VfA~GD~~~g~ 428 (449)
T TIGR01316 353 CQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI-MAE-T-TRLKTSERGTIVVD-EDQRTSIPGVFAGGDIILGA 428 (449)
T ss_pred ecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch-hhh-c-cCcccCCCCeEEeC-CCCccCCCCEEEecCCCCCc
Confidence 22 3689999999999999974 343 3 555 6778999998 56778999999999998766
Q ss_pred c---CccHHHHHHHHHhhhcc
Q 035902 359 H---GISIDAKNIANDINLAL 376 (381)
Q Consensus 359 ~---~a~~~a~~~a~~i~~~l 376 (381)
. .|+.+|+.+|.+|+.+|
T Consensus 429 ~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 429 ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 5 89999999999998875
No 47
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.7e-32 Score=246.70 Aligned_cols=252 Identities=33% Similarity=0.562 Sum_probs=206.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------C-CCCeeeecCCcccccCCCCCCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR--------A-YDRMKLHLAKQFCELPHMPFPSRTPT 72 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (381)
..++|+|||||+|||.+|+.|.++|.+++++||.+++||+|... . |..+..+.++.+++++++|++...+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 46899999999999999999999999999999999999999865 4 89999999999999999999998665
Q ss_pred -CCCHHHHHHHHHHHHHHhCCc--cccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC--CCCCCCCC
Q 035902 73 -FVPRISFINYVDNYVSQMGIN--PRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN--GLIPEVPG 147 (381)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--~~~~~~~g 147 (381)
+++..++.+||+.+++++++. +.++++|..++...+ +.|.|...+.... .....+|.|++|||.. |+.|.++|
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 488889999999999999875 567777777776542 6899999876432 3578899999999998 89999888
Q ss_pred --CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC-cceechhhHHHHHHHHhhCcHH
Q 035902 148 --LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP-VHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~-~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
++.++|.++|+.+|.....+.+|+|+|||.|.||+|++..+++.+++|++..+.. ....+
T Consensus 163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~----------------- 225 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEP----------------- 225 (448)
T ss_pred CchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccc-----------------
Confidence 6789999999999999999999999999999999999999999998888876510 00000
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeE-EEcCCcEeec
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEV-EFENGKIEEF 303 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v-~~~~g~~~~~ 303 (381)
......++..+..|+.+++++. .+.++....+
T Consensus 226 -----------------------------------------------~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~ 258 (448)
T KOG1399|consen 226 -----------------------------------------------PEILGENLWQVPSIKSFTEDGSVFEKGGPVERV 258 (448)
T ss_pred -----------------------------------------------cceeecceEEccccccccCcceEEEcCceeEEe
Confidence 0001123333333666677774 4456678899
Q ss_pred cEEEEecCCCCCcchh
Q 035902 304 EAIIFATGYKSTVRNW 319 (381)
Q Consensus 304 D~vi~a~G~~p~~~~~ 319 (381)
|.||+|||+.-.++++
T Consensus 259 D~ii~ctgy~y~fPfl 274 (448)
T KOG1399|consen 259 DRIIFCTGYKYKFPFL 274 (448)
T ss_pred eeEEEeeeeEeeccee
Confidence 9999999999887543
No 48
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.2e-32 Score=255.54 Aligned_cols=300 Identities=16% Similarity=0.179 Sum_probs=193.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCCeee-ecCCccc-----ccCCCCCCCCCCCCCCHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDRMKL-HLAKQFC-----ELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~ 77 (381)
+|+||||||+|+++|..+++.|.+|+|||++. +|| ..+..+.+.-.+ .....+. .......... ....+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHH
Confidence 69999999999999999999999999999975 455 444444332111 1000000 0000110000 0011222
Q ss_pred HHHHH-----------HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 78 SFINY-----------VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 78 ~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
.+..+ .+..+++.++++..+ ++..++ .+...|..+++ ..+++||+||||||+.|..|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~----~~~v~v~~~~~----~~~~~~d~lviATGs~p~~~p~~ 150 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFET----DHRVRVEYGDK----EEVVDAEQFIIAAGSEPTELPFA 150 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcc----CCEEEEeeCCC----cEEEECCEEEEeCCCCCCCCCCC
Confidence 22222 122333345554322 222221 24444444322 25799999999999999877776
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
+.+.. .++++.+.... ...+++++|||+|++|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 151 ~~~~~--~v~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~~~l--------- 217 (458)
T PRK06912 151 PFDGK--WIINSKHAMSL-PSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIAHIL--------- 217 (458)
T ss_pred CCCCC--eEEcchHHhCc-cccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHHHHH---------
Confidence 65431 23444333332 2357899999999999999999999999999999988 67676554433332
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEc-CC--c
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFE-NG--K 299 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~-~g--~ 299 (381)
.+.+++.+++++.+ +++++.+ .+.+. ++ +
T Consensus 218 --------------------------------------------~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~ 253 (458)
T PRK06912 218 --------------------------------------------REKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQ 253 (458)
T ss_pred --------------------------------------------HHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceE
Confidence 33445668888877 7777653 34443 34 3
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++|+.+.+.. +..++ ++++| +.+| +.++++.|||||+||+.+.+. .|..||+.+|.+|.+.
T Consensus 254 ~i~~D~vivA~G~~p~~~~l~l-~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 254 EVNAEFVLVSVGRKPRVQQLNL-EKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred EEEeCEEEEecCCccCCCCCCc-hhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999864422 33555 55566 8888 567789999999999997654 8999999999999763
No 49
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-32 Score=262.22 Aligned_cols=308 Identities=15% Similarity=0.157 Sum_probs=193.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-CCCCC-CcCCCCCC-CeeeecCCc-----------ccccC--CCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE-DCSAS-LWKKRAYD-RMKLHLAKQ-----------FCELP--HMPF 66 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~~~g~-~~~~~~~~-~~~~~~~~~-----------~~~~~--~~~~ 66 (381)
+|||+|||+|++|..+|..+++.|.+|+|||+. ..+|| ..+..+.+ ++....... .+++. .++.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 589999999999999999999999999999974 35777 23333332 221111100 11111 0000
Q ss_pred ------CC--CC--CCCCCHHHHHHHHHHHHHHh--CCc-------cccccEEEEEEEeCCCCeE----EEEEe-ecCCC
Q 035902 67 ------PS--RT--PTFVPRISFINYVDNYVSQM--GIN-------PRYHRSVESASYDENAKAW----IIVAK-NTALD 122 (381)
Q Consensus 67 ------~~--~~--~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~v~~i~~~~~~~~~----~v~~~-~~~~~ 122 (381)
+. .. ........+.++.+...++. ++. +...++...+.... +.| +|... ++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a~f~~~~~v~v~~~g--- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--GHIVDKNTIKSEKSG--- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--EEEecCCeEEEccCC---
Confidence 00 00 01123334444333332221 110 11111222222211 111 13332 22
Q ss_pred ceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 123 AYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 123 ~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+.+.||+||||||+.|..|++++.+.. .++++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+
T Consensus 271 --~~i~ad~lIIATGS~P~~P~~~~~~~~--~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 271 --KEFKVKNIIIATGSTPNIPDNIEVDQK--SVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred --EEEECCEEEEcCCCCCCCCCCCCCCCC--cEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 579999999999999988876554431 2444433332 23357899999999999999999999999999999998
Q ss_pred cceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEc
Q 035902 203 VHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVF 282 (381)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 282 (381)
.++|..+.++...+.+.+ +++.+|+++
T Consensus 346 -~ll~~~d~eis~~l~~~l----------------------------------------------------l~~~GV~I~ 372 (659)
T PTZ00153 346 -QLLPLLDADVAKYFERVF----------------------------------------------------LKSKPVRVH 372 (659)
T ss_pred -cccccCCHHHHHHHHHHH----------------------------------------------------hhcCCcEEE
Confidence 777766655544443322 245678888
Q ss_pred cC--cceEeCC----eEEE--cC-------C--------cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCC
Q 035902 283 PS--ITSINRN----EVEF--EN-------G--------KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCP 339 (381)
Q Consensus 283 ~~--v~~v~~~----~v~~--~~-------g--------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~ 339 (381)
.+ |++++.+ .+.+ .+ + +++++|.|++|+|++||++.+.. +..++...+|++.+| +
T Consensus 373 ~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l-~~~gi~~~~G~I~VD-e 450 (659)
T PTZ00153 373 LNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGL-DKLKIQMKRGFVSVD-E 450 (659)
T ss_pred cCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCc-hhcCCcccCCEEeEC-C
Confidence 77 7777643 1332 21 1 37999999999999999975533 335653235889998 4
Q ss_pred CCCCC------CCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 340 NHWKG------ENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 340 ~~~~~------~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
.++++ .|||||+|||.+.++ .|..||+.++++|.+.
T Consensus 451 ~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 451 HLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 55554 689999999998654 8899999999999864
No 50
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=6.2e-32 Score=248.67 Aligned_cols=280 Identities=17% Similarity=0.222 Sum_probs=198.4
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+|+|||||+||+.+|..|+++ +.+|+|||+++... |.. .. +..........++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~-------------~~--~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSG-------------ML--PGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccc-------------hh--hHHHheeCCHHHhcc
Confidence 589999999999999999754 57999999887421 000 00 000011223445655
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC-
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK- 160 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~- 160 (381)
.+.+++++++++++. .+|.+++.++ +. |.+.++ +++.||+||+|||+.+..|.+||..+. .+....
T Consensus 59 ~~~~~~~~~gv~~~~-~~v~~id~~~--~~--V~~~~g-----~~~~yD~LviAtG~~~~~~~i~g~~~~---~~~~~~~ 125 (364)
T TIGR03169 59 DLRRLARQAGARFVI-AEATGIDPDR--RK--VLLANR-----PPLSYDVLSLDVGSTTPLSGVEGAADL---AVPVKPI 125 (364)
T ss_pred cHHHHHHhcCCEEEE-EEEEEEeccc--CE--EEECCC-----CcccccEEEEccCCCCCCCCCCccccc---ccccCCH
Confidence 666777778888765 5799898765 43 777776 579999999999999999999885431 111110
Q ss_pred ---------CCCCC--CCCCCeEEEEcCCCCHHHHHHHHhh----CC--CeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 161 ---------YENGG--KFIGKNVLVVGCGNSGMEIAYDLSS----CG--ACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 161 ---------~~~~~--~~~~~~v~viG~G~~~~e~a~~l~~----~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
+.... ...+++++|+|+|.+|+|+|..|++ .| .+|+++ +.+ .+++....++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~~~~~~------- 196 (364)
T TIGR03169 126 ENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPAKVRRL------- 196 (364)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCHHHHHH-------
Confidence 00001 1135799999999999999999985 34 479998 444 4444332222222
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEe
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIE 301 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~ 301 (381)
+.+.+++.+|+++.+ +++++++.+.+.+|+++
T Consensus 197 ----------------------------------------------~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i 230 (364)
T TIGR03169 197 ----------------------------------------------VLRLLARRGIEVHEGAPVTRGPDGALILADGRTL 230 (364)
T ss_pred ----------------------------------------------HHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEE
Confidence 244557788999887 88888778889899999
Q ss_pred eccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCC-CCCcEEEEecccccc--------cCccHHHHHHHHH
Q 035902 302 EFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWK-GENGLYCAGFSRTGL--------HGISIDAKNIAND 371 (381)
Q Consensus 302 ~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~~~ifa~Gd~~~~~--------~~a~~~a~~~a~~ 371 (381)
++|.+++|+|.+|+. ++. . .++ ++++|++.+| +..++ +.|||||+|||+... ..|+.||+.+|+|
T Consensus 231 ~~D~vi~a~G~~p~~--~l~-~-~gl~~~~~g~i~vd-~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~n 305 (364)
T TIGR03169 231 PADAILWATGARAPP--WLA-E-SGLPLDEDGFLRVD-PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAAN 305 (364)
T ss_pred ecCEEEEccCCChhh--HHH-H-cCCCcCCCCeEEEC-CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHH
Confidence 999999999999985 333 3 344 6778999998 44554 899999999997532 1689999999999
Q ss_pred hhhccccC
Q 035902 372 INLALTDH 379 (381)
Q Consensus 372 i~~~l~~~ 379 (381)
|...+...
T Consensus 306 i~~~l~g~ 313 (364)
T TIGR03169 306 LRASLRGQ 313 (364)
T ss_pred HHHHhcCC
Confidence 99887654
No 51
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=6.3e-32 Score=253.94 Aligned_cols=297 Identities=14% Similarity=0.145 Sum_probs=189.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCC-CeeeecCCccccc---CCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYD-RMKLHLAKQFCEL---PHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 77 (381)
+||++|||+||+|..+|.. ..|.+|+|||++ .+|| ..+..+.+ ++........... ..+-.... .......
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 6999999999999998654 469999999985 4666 34444333 2211111100000 00000000 0011122
Q ss_pred HHHHHHHH------------H-H--HHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 78 SFINYVDN------------Y-V--SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 78 ~~~~~~~~------------~-~--~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.++... . . ++.+++++.++.+.. + .++|.+.++ ..++||+||+|||+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~---~~~V~~~~g-----~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV----G---PRTLRTGDG-----EEITGDQIVIAAGSRPYI 145 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe----c---CCEEEECCC-----cEEEeCEEEEEECCCCCC
Confidence 22222111 1 1 114555554433211 1 233666554 569999999999999988
Q ss_pred CCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCc
Q 035902 143 PEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLP 222 (381)
Q Consensus 143 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~ 222 (381)
|+..+... ....++.+.....+ .+++++|||+|++|+|+|..+.+.|.+|+++.+.+ .+++..+.++...+.+
T Consensus 146 p~~~~~~~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l~~--- 218 (452)
T TIGR03452 146 PPAIADSG--VRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDRFTE--- 218 (452)
T ss_pred CCCCCCCC--CEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCHHHHHHHHH---
Confidence 76433221 11233333322222 47999999999999999999999999999999988 5666554443322211
Q ss_pred HHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEc
Q 035902 223 CKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFE 296 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~ 296 (381)
. .+.+++++.+ +++++. ++ +.+.
T Consensus 219 --------------------------------------------------~-~~~gI~i~~~~~V~~i~~~~~~v~v~~~ 247 (452)
T TIGR03452 219 --------------------------------------------------I-AKKKWDIRLGRNVTAVEQDGDGVTLTLD 247 (452)
T ss_pred --------------------------------------------------H-HhcCCEEEeCCEEEEEEEcCCeEEEEEc
Confidence 1 1235677765 677753 23 4556
Q ss_pred CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 297 NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+|+++++|.+++++|++|+.+.+.. +..++ ++++|++.+| +.++|+.|+|||+|||++.+. .|..||+.+|+||
T Consensus 248 ~g~~i~~D~vl~a~G~~pn~~~l~~-~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni 325 (452)
T TIGR03452 248 DGSTVTADVLLVATGRVPNGDLLDA-EAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNL 325 (452)
T ss_pred CCCEEEcCEEEEeeccCcCCCCcCc-hhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHh
Confidence 7889999999999999999965433 44566 7788999999 566799999999999987644 7899999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 326 ~~~ 328 (452)
T TIGR03452 326 LHP 328 (452)
T ss_pred cCC
Confidence 864
No 52
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=6.3e-32 Score=254.90 Aligned_cols=274 Identities=21% Similarity=0.252 Sum_probs=193.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||+|+++|..|++.|++|+|||+.+.+||.+... . +.+....++..+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~~~~ 196 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIVDRE 196 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHHHHH
Confidence 789999999999999999999999999999998887653221 0 1111224666666
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.++++++++++++.+. .. +.+.+ ..+.||+||+|||+. +..+.++|.+. .+ +++..++.
T Consensus 197 ~~~l~~~gv~~~~~~~v~--------~~--v~~~~------~~~~~d~vvlAtGa~~~~~~~i~G~~~-~g-v~~~~~~l 258 (457)
T PRK11749 197 VERLLKLGVEIRTNTEVG--------RD--ITLDE------LRAGYDAVFIGTGAGLPRFLGIPGENL-GG-VYSAVDFL 258 (457)
T ss_pred HHHHHHcCCEEEeCCEEC--------Cc--cCHHH------HHhhCCEEEEccCCCCCCCCCCCCccC-CC-cEEHHHHH
Confidence 777777898888777651 11 22222 126799999999996 77777888653 22 33322211
Q ss_pred C--------CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 163 N--------GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 163 ~--------~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
. .....+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|....
T Consensus 259 ~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~---------------------- 316 (457)
T PRK11749 259 TRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE---------------------- 316 (457)
T ss_pred HHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH----------------------
Confidence 1 111258999999999999999999999987 899999976322332111
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe-----EEEc----------
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE-----VEFE---------- 296 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~-----v~~~---------- 296 (381)
..+.+++.+|+++.+ +.++.++. +.+.
T Consensus 317 ------------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~ 360 (457)
T PRK11749 317 ------------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDAS 360 (457)
T ss_pred ------------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCC
Confidence 123334556666655 55554321 4331
Q ss_pred ---------CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccH
Q 035902 297 ---------NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISI 363 (381)
Q Consensus 297 ---------~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~ 363 (381)
+++++++|.||+++|++|+.. ++. ...++ ++++|++.++...+.|+.|+||++||++.+.. .|+.
T Consensus 361 g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-l~~-~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~ 438 (457)
T PRK11749 361 GRRRVPIEGSEFTLPADLVIKAIGQTPNPL-ILS-TTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVG 438 (457)
T ss_pred CCcccCCCCceEEEECCEEEECccCCCCch-hhc-cccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHH
Confidence 234799999999999999964 333 32455 77889999984357789999999999987643 8999
Q ss_pred HHHHHHHHhhhccccC
Q 035902 364 DAKNIANDINLALTDH 379 (381)
Q Consensus 364 ~a~~~a~~i~~~l~~~ 379 (381)
+|+.+|.+|...|+..
T Consensus 439 ~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 439 DGKDAAEAIHEYLEGA 454 (457)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988653
No 53
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=9.8e-32 Score=267.02 Aligned_cols=279 Identities=20% Similarity=0.206 Sum_probs=199.0
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 6 VVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
|+|||||+||+.+|..|++. +.+|+|||+++.++ |..+.+ +..+....+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--------------~~~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--------------SSVLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--------------cHHHCCCCCHHHccCC
Confidence 68999999999999999876 45899999998653 111100 0001111122333333
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
..+++++.+++++++++|++++... + .|.+.++ ..+.||+||+|||+.|+.|++||.+.. + ++......
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k--~V~~~~g-----~~~~yD~LVlATGs~p~~p~ipG~~~~-~-v~~~rt~~ 128 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQ--K--QVITDAG-----RTLSYDKLILATGSYPFILPIPGADKK-G-VYVFRTIE 128 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCC--C--EEEECCC-----cEeeCCEEEECCCCCcCCCCCCCCCCC-C-EEEeCCHH
Confidence 3445566799999999999998754 3 3777766 679999999999999999999997642 2 33322211
Q ss_pred CC-----CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHHHHHhhh
Q 035902 163 NG-----GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIVVMLSKM 236 (381)
Q Consensus 163 ~~-----~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (381)
+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++++. +......
T Consensus 129 d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld~~~~~~-------------------- 187 (785)
T TIGR02374 129 DLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLDQTAGRL-------------------- 187 (785)
T ss_pred HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcCHHHHHH--------------------
Confidence 11 11247899999999999999999999999999999888 554432 2221211
Q ss_pred hhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEEec
Q 035902 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~a~ 310 (381)
+.+.+++.+|+++.+ ++++.++ .+.+.+|+++++|.||+++
T Consensus 188 ---------------------------------l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~ 234 (785)
T TIGR02374 188 ---------------------------------LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAA 234 (785)
T ss_pred ---------------------------------HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECC
Confidence 234456678888877 7777643 4778899999999999999
Q ss_pred CCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc-------CccHHHHHHHHHhhhc
Q 035902 311 GYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------GISIDAKNIANDINLA 375 (381)
Q Consensus 311 G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i~~~ 375 (381)
|++|+.. +.. + .++-. +|.+.+| +.++|+.|||||+|||+.... .|..||+.+|+||.+.
T Consensus 235 G~~Pn~~-la~-~-~gl~~-~ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 235 GIRPNDE-LAV-S-AGIKV-NRGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred CCCcCcH-HHH-h-cCCcc-CCCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 9999986 333 2 55422 2557787 567789999999999975322 5789999999999874
No 54
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=2e-31 Score=266.69 Aligned_cols=273 Identities=19% Similarity=0.222 Sum_probs=190.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||..|++.|++|+|||+.+.+||.+.. + +|.+....++.+..
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y---------------G---------IP~~rlp~~vi~~~ 362 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY---------------G---------IPEFRLPNQLIDDV 362 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc---------------c---------CCCCcChHHHHHHH
Confidence 78999999999999999999999999999999988886432 1 12333345667766
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.+++.|+++++++.+. .. +++++. ....||+||+|||+. |+.+++||.+. .| ++...++.
T Consensus 363 i~~l~~~Gv~f~~n~~vG--------~d--it~~~l-----~~~~yDAV~LAtGA~~pr~l~IpG~dl-~G-V~~a~dfL 425 (944)
T PRK12779 363 VEKIKLLGGRFVKNFVVG--------KT--ATLEDL-----KAAGFWKIFVGTGAGLPTFMNVPGEHL-LG-VMSANEFL 425 (944)
T ss_pred HHHHHhhcCeEEEeEEec--------cE--EeHHHh-----ccccCCEEEEeCCCCCCCcCCCCCCcC-cC-cEEHHHHH
Confidence 677788899988876551 11 444433 345799999999996 88888998643 22 23222211
Q ss_pred C---------------CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 163 N---------------GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 163 ~---------------~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
. .....+++++|||||.+|+|+|..+.++|++|++++|++....|.....+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~------------ 493 (944)
T PRK12779 426 TRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHH------------ 493 (944)
T ss_pred HHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHH------------
Confidence 0 1123579999999999999999999999999999999873233322111110
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe----------------
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN---------------- 289 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~---------------- 289 (381)
..+.+++++.. +.++.
T Consensus 494 ----------------------------------------------a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~ 527 (944)
T PRK12779 494 ----------------------------------------------ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVN 527 (944)
T ss_pred ----------------------------------------------HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEE
Confidence 01112222221 22221
Q ss_pred ------CCe--EEEcCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 290 ------RNE--VEFENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 290 ------~~~--v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
.++ ....+| .++++|.||+|+|+.|+.. +.. ...++ ++++|++.++.....|+.|+|||+||++.+.
T Consensus 528 ~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~-~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~ 605 (944)
T PRK12779 528 ELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKD-AEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605 (944)
T ss_pred EeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhh-cccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence 101 111123 4699999999999999974 333 22455 6788999998445678999999999999876
Q ss_pred c---CccHHHHHHHHHhhhccc
Q 035902 359 H---GISIDAKNIANDINLALT 377 (381)
Q Consensus 359 ~---~a~~~a~~~a~~i~~~l~ 377 (381)
. .|+.+|+.+|++|.++|.
T Consensus 606 ~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 606 STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4 999999999999998875
No 55
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.98 E-value=3.3e-31 Score=261.08 Aligned_cols=285 Identities=22% Similarity=0.262 Sum_probs=184.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||++||+.|+++|++|+|||+.+.+||.+... . +.+....++...
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL~~ 594 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELIQH 594 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHHHH
Confidence 3789999999999999999999999999999998888754321 1 112222344555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.+.++|+++++++.+ .+.. .+. ....||+||||||++ +..+.++|.+. .+++..++
T Consensus 595 die~l~~~GVe~~~gt~V-di~l-----------e~L-----~~~gYDaVILATGA~~~~~l~IpG~~~---gV~saldf 654 (1019)
T PRK09853 595 DIEFVKAHGVKFEFGCSP-DLTV-----------EQL-----KNEGYDYVVVAIGADKNGGLKLEGGNQ---NVIKALPF 654 (1019)
T ss_pred HHHHHHHcCCEEEeCcee-EEEh-----------hhh-----eeccCCEEEECcCCCCCCCCCCCCccC---CceehHHH
Confidence 556667789998888766 2222 111 345699999999998 55566777541 13332222
Q ss_pred CCC------CCCCCCeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 162 ENG------GKFIGKNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 162 ~~~------~~~~~~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
... ....+++++|||||.+|+|+|..+.+.+ .+|+++.|++...+|....++...+
T Consensus 655 L~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al---------------- 718 (1019)
T PRK09853 655 LEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL---------------- 718 (1019)
T ss_pred HHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH----------------
Confidence 111 1235899999999999999999998874 4899999987444444332221111
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhc-CCCeEEccC-cceEeCC----eEEEcCCcEeeccEEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-KGEIQVFPS-ITSINRN----EVEFENGKIEEFEAII 307 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi 307 (381)
..|+.. .....+ ..+. ++++.+..- +...+.+ .+...++.++++|.||
T Consensus 719 ---------eeGVe~----------~~~~~p-------~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VI 772 (1019)
T PRK09853 719 ---------EDGVEF----------KELLNP-------ESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVI 772 (1019)
T ss_pred ---------HcCCEE----------EeCCce-------EEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEE
Confidence 111110 000000 0000 111111100 0011111 1222344689999999
Q ss_pred EecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhccc
Q 035902 308 FATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLALT 377 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l~ 377 (381)
+|+|.+|+.+. +. . .++ ++++|++.++ +..+++.|||||+||++.++. .|+.+|+.+|++|.+.+.
T Consensus 773 vAIG~~Pntel-le-~-~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 773 TAIGEQVDTEL-LK-A-NGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ECCCCcCChhH-HH-h-cCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999864 34 3 565 6788999987 566788999999999987654 899999999999988654
No 56
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.7e-30 Score=220.37 Aligned_cols=305 Identities=16% Similarity=0.182 Sum_probs=208.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCCeee-ecC--------CcccccCCCC-CCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-WKKRAYDRMKL-HLA--------KQFCELPHMP-FPSRTP 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~-~~~--------~~~~~~~~~~-~~~~~~ 71 (381)
++|.+|||||..|+.+|+..++.|.++.|+|..-.+||+ -+..+.++-.+ ..+ ..-++|+... ...+|.
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~ 99 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWK 99 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHH
Confidence 489999999999999999999999999999987555552 22222221111 000 1111222210 001222
Q ss_pred CCC-CHHHHHHHHHHHHHH----hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 72 TFV-PRISFINYVDNYVSQ----MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 72 ~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
.+. .++.....|....++ .++.++.+. . .... .+...|...++ ....+++++++||+|.+|.+|++|
T Consensus 100 ~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-a---~f~~-~~~v~V~~~d~---~~~~Ytak~iLIAtGg~p~~PnIp 171 (478)
T KOG0405|consen 100 VIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-A---RFVS-PGEVEVEVNDG---TKIVYTAKHILIATGGRPIIPNIP 171 (478)
T ss_pred HHHhhhhHHHHHHHHHHHhhccccceeEEeee-E---EEcC-CCceEEEecCC---eeEEEecceEEEEeCCccCCCCCC
Confidence 211 223333333322222 122222211 1 1111 23334555554 124589999999999999999999
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
|.+. -+.+..+++.++ .++|++|+|+|++|+|+|..++.+|.+++++.|.+ .++..++..+...+.+.
T Consensus 172 G~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~~i~~~v~~~------ 239 (478)
T KOG0405|consen 172 GAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDEMISDLVTEH------ 239 (478)
T ss_pred chhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhHHHHHHHHHH------
Confidence 9874 266666666655 69999999999999999999999999999999999 67666666555444443
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcCCc
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFENGK 299 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~g~ 299 (381)
+...++++++. ++++... .+....+.
T Consensus 240 -----------------------------------------------~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~ 272 (478)
T KOG0405|consen 240 -----------------------------------------------LEGRGINVHKNSSVTKVIKTDDGLELVITSHGT 272 (478)
T ss_pred -----------------------------------------------hhhcceeecccccceeeeecCCCceEEEEeccc
Confidence 35567777776 5555432 24445666
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
...+|.++||+|++|++..+.. ++.|+ ++..|.+++| +...|+.|+||++||+.+-.. .|...|+.+++.+.+.
T Consensus 273 i~~vd~llwAiGR~Pntk~L~l-e~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 273 IEDVDTLLWAIGRKPNTKGLNL-ENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred cccccEEEEEecCCCCcccccc-hhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcC
Confidence 6669999999999999987766 77888 8999999999 677899999999999987654 9999999999998874
Q ss_pred c
Q 035902 376 L 376 (381)
Q Consensus 376 l 376 (381)
-
T Consensus 351 ~ 351 (478)
T KOG0405|consen 351 G 351 (478)
T ss_pred C
Confidence 3
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=4.2e-31 Score=262.82 Aligned_cols=273 Identities=21% Similarity=0.239 Sum_probs=186.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||..|+++|++|+|||+.+.+||.+.. +++. +....++.+..
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~---------~rlp~~~~~~~ 487 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPE---------FRLPKKIVDVE 487 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCC---------CCCCHHHHHHH
Confidence 78999999999999999999999999999998878775432 1111 11123455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.++++++++++++.+. .. +.+++. ....||+||||||+. |+.+++||.+. .+ +++..++.
T Consensus 488 ~~~l~~~gv~~~~~~~v~--------~~--v~~~~l-----~~~~ydavvlAtGa~~~~~l~ipG~~~-~g-V~~~~~~l 550 (752)
T PRK12778 488 IENLKKLGVKFETDVIVG--------KT--ITIEEL-----EEEGFKGIFIASGAGLPNFMNIPGENS-NG-VMSSNEYL 550 (752)
T ss_pred HHHHHHCCCEEECCCEEC--------Cc--CCHHHH-----hhcCCCEEEEeCCCCCCCCCCCCCCCC-CC-cEEHHHHH
Confidence 566677899988876541 11 333332 346699999999995 88888888653 22 33322211
Q ss_pred -------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 163 -------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 163 -------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
......+++++|||+|.+|+|+|..+.++|.+ |++++|++...+|....++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~--------------- 615 (752)
T PRK12778 551 TRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV--------------- 615 (752)
T ss_pred HHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH---------------
Confidence 11123579999999999999999999999987 9999998732233221111
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEE-----
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEF----- 295 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~----- 295 (381)
+.+++.+++++.. +.++.. + ++.+
T Consensus 616 -------------------------------------------~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 652 (752)
T PRK12778 616 -------------------------------------------KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMEL 652 (752)
T ss_pred -------------------------------------------HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEe
Confidence 1122233333322 222211 0 1111
Q ss_pred --------------cC-CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 296 --------------EN-GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 296 --------------~~-g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
++ .+++++|.||+|+|++|+.. ++. ...++ ++++|++.+| +...|+.|||||+||++.++.
T Consensus 653 ~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-l~~-~~~gl~~~~~G~i~vd-~~~~Ts~~gVfA~GD~~~g~~ 729 (752)
T PRK12778 653 GEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL-VPS-SIPGLELNRKGTIVVD-EEMQSSIPGIYAGGDIVRGGA 729 (752)
T ss_pred cCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc-ccc-cccCceECCCCCEEeC-CCCCCCCCCEEEeCCccCCcH
Confidence 11 23689999999999999974 333 32355 6778999998 456789999999999998754
Q ss_pred ---CccHHHHHHHHHhhhcccc
Q 035902 360 ---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~l~~ 378 (381)
.|+.+|+.+|.+|+++|.+
T Consensus 730 ~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 730 TVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999865
No 58
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=206.84 Aligned_cols=291 Identities=18% Similarity=0.216 Sum_probs=209.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||+|||+..+|+++++..++-+|||.-... + .-++-++...-..-++|. +|.-....++.+.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-~-----i~pGGQLtTTT~veNfPG------FPdgi~G~~l~d~m 76 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-G-----IAPGGQLTTTTDVENFPG------FPDGITGPELMDKM 76 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-C-----cCCCceeeeeeccccCCC------CCcccccHHHHHHH
Confidence 48999999999999999999999999999953210 0 001111111111122232 34455678999999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC-C-CCCcceeecCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL-G-SFEGEYMHSSKY 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~-~-~~~~~~~~~~~~ 161 (381)
+++..++|.++. ...|.+++... +-|.+.++. +.+++|.||+|||+..+...+||. + +|+.+-+..|..
T Consensus 77 rkqs~r~Gt~i~-tEtVskv~~ss--kpF~l~td~------~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAV 147 (322)
T KOG0404|consen 77 RKQSERFGTEII-TETVSKVDLSS--KPFKLWTDA------RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAV 147 (322)
T ss_pred HHHHHhhcceee-eeehhhccccC--CCeEEEecC------CceeeeeEEEecccceeeeecCCCCcchHHhcccchhhc
Confidence 999999997754 44577787766 667787755 689999999999999887778776 3 388888888988
Q ss_pred CCCCC--CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 162 ENGGK--FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 162 ~~~~~--~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
++... +.+|..+|||||.+|+|-|.+|.+.+++|+++.|++ .+-.+. .+
T Consensus 148 CDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd-~fRAs~----------~M------------------ 198 (322)
T KOG0404|consen 148 CDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD-HFRASK----------IM------------------ 198 (322)
T ss_pred ccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh-hhhHHH----------HH------------------
Confidence 88765 789999999999999999999999999999999999 321100 00
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEE-----cCCcEeeccEEE
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEF-----ENGKIEEFEAII 307 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~-----~~g~~~~~D~vi 307 (381)
..+..++.+|+++.+ +.+..++ ++.+ .+...++++-++
T Consensus 199 ------------------------------q~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlF 248 (322)
T KOG0404|consen 199 ------------------------------QQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLF 248 (322)
T ss_pred ------------------------------HHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeE
Confidence 022334567777766 3333333 2222 223578999999
Q ss_pred EecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccc
Q 035902 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALT 377 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~ 377 (381)
+++|..|++. +++ . +--+|++||+.+.....+|+.|++||+||+-..-. .|...|..+|-...++|.
T Consensus 249 f~IGH~Pat~-~l~-g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 249 FAIGHSPATK-FLK-G-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLT 319 (322)
T ss_pred EEecCCchhh-Hhc-C-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhh
Confidence 9999999995 454 2 33389999999885567799999999999966533 555566666665555554
No 59
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=3e-30 Score=251.82 Aligned_cols=275 Identities=20% Similarity=0.219 Sum_probs=186.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||+|+++|..|++.|++|+|||+++.+||.+... + +.+....++.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHHHH
Confidence 3789999999999999999999999999999999888865321 1 111122345555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.+.++|+++++++.+. .+ +...+ ....||.||+|||+.+ ..+.+||.+. .+ ++...++
T Consensus 249 ~~~~l~~~Gv~i~~~~~v~-~d---------v~~~~------~~~~~DaVilAtGa~~~~~~~ipG~~~-~g-v~~~~~~ 310 (652)
T PRK12814 249 DIAPLRAMGAEFRFNTVFG-RD---------ITLEE------LQKEFDAVLLAVGAQKASKMGIPGEEL-PG-VISGIDF 310 (652)
T ss_pred HHHHHHHcCCEEEeCCccc-Cc---------cCHHH------HHhhcCEEEEEcCCCCCCCCCCCCcCc-CC-cEeHHHH
Confidence 5566677788887776441 10 12221 1234999999999984 5677888653 22 2322222
Q ss_pred C-----CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 E-----NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~-----~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
. ......+++++|||+|.+|+|+|..+.++|. +|+++.|++...+|....++...
T Consensus 311 l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a------------------- 371 (652)
T PRK12814 311 LRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEA------------------- 371 (652)
T ss_pred HHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH-------------------
Confidence 1 1123468999999999999999999999986 69999998743445432221111
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce-------------------
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE------------------- 292 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~------------------- 292 (381)
.+.+|+++.. +.++.. ++
T Consensus 372 ---------------------------------------~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~ 412 (652)
T PRK12814 372 ---------------------------------------LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRR 412 (652)
T ss_pred ---------------------------------------HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCC
Confidence 1112222222 222211 00
Q ss_pred -EEEcCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHH
Q 035902 293 -VEFENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDA 365 (381)
Q Consensus 293 -v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a 365 (381)
....+| ..+++|.||+++|..|++.. +. . .++ ++.+|++.+|...+.|+.|||||+||+..++. .|+.+|
T Consensus 413 ~~~~~~g~~~~i~~D~VI~AiG~~p~~~l-l~-~-~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G 489 (652)
T PRK12814 413 RPVPVEGSEFTLQADTVISAIGQQVDPPI-AE-A-AGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQG 489 (652)
T ss_pred cceecCCceEEEECCEEEECCCCcCCccc-cc-c-cCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHH
Confidence 111122 26899999999999999853 33 3 555 67789999995567789999999999987654 899999
Q ss_pred HHHHHHhhhccccCC
Q 035902 366 KNIANDINLALTDHQ 380 (381)
Q Consensus 366 ~~~a~~i~~~l~~~~ 380 (381)
+.+|++|...|...+
T Consensus 490 ~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 490 KRAAHAIDLFLNGKP 504 (652)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999997654
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=9.5e-30 Score=232.37 Aligned_cols=284 Identities=19% Similarity=0.195 Sum_probs=186.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+++|..|++.|.++++||+.+.+++.+... .+ +...+.+.+....
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~--------~~~~~~~~~~~~~ 75 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IP--------EFRIPIERVREGV 75 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cc--------ccccCHHHHHHHH
Confidence 789999999999999999999999999999998777643211 00 0011233444444
Q ss_pred HHHHHHhCCccccccEEEEEEE--eCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCC
Q 035902 84 DNYVSQMGINPRYHRSVESASY--DENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~ 160 (381)
+++. +.++.++.++.+..+.. ....+.+....... +...+.||+||+|||++ +..|++||.+. .+ ++...+
T Consensus 76 ~~l~-~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~lviAtGs~~~~~~~ipg~~~-~~-v~~~~~ 149 (352)
T PRK12770 76 KELE-EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSL---EELVKKYDAVLIATGTWKSRKLGIPGEDL-PG-VYSALE 149 (352)
T ss_pred HHHH-hCCeEEecCcEEeeccccccccccccccccCCH---HHHHhhCCEEEEEeCCCCCCcCCCCCccc-cC-ceeHHH
Confidence 4444 44888888887765532 11112222221111 11247899999999995 77888888653 11 222110
Q ss_pred -------C----C---CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 161 -------Y----E---NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 161 -------~----~---~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
+ . ......+++++|||+|.+|+|+|..+...|.+ |+++.|++....+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~---------------- 213 (352)
T PRK12770 150 YLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG---------------- 213 (352)
T ss_pred HHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC----------------
Confidence 0 0 11122368999999999999999999999986 999998762100000
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEE----
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEF---- 295 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~---- 295 (381)
....+.+++.+++++.+ +.++.++ .+.+
T Consensus 214 ------------------------------------------~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~ 251 (352)
T PRK12770 214 ------------------------------------------KYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMR 251 (352)
T ss_pred ------------------------------------------HHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEE
Confidence 00122234455555554 4444332 1111
Q ss_pred ----------------cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 296 ----------------ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 296 ----------------~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
.+++++++|.+|+++|++|++.. .. +..++ ++++|++.+| +..+++.|+||++|||..++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l-~~-~~~g~~~~~~g~i~vd-~~~~t~~~~vyaiGD~~~~~ 328 (352)
T PRK12770 252 LGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPF-AK-ECLGIELNRKGEIVVD-EKHMTSREGVFAAGDVVTGP 328 (352)
T ss_pred ecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchh-hh-cccCceecCCCcEeeC-CCcccCCCCEEEEcccccCc
Confidence 12357999999999999999753 33 22455 6778889888 45678899999999998755
Q ss_pred c---CccHHHHHHHHHhhhccc
Q 035902 359 H---GISIDAKNIANDINLALT 377 (381)
Q Consensus 359 ~---~a~~~a~~~a~~i~~~l~ 377 (381)
. .|+.+|..+|++|.+.|.
T Consensus 329 ~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 329 SKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 4 899999999999999884
No 61
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=4.6e-30 Score=220.41 Aligned_cols=304 Identities=17% Similarity=0.181 Sum_probs=202.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCC-CeeeecCCcccccCC----------CCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-KRAYD-RMKLHLAKQFCELPH----------MPFPSRT 70 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~ 70 (381)
++||+|||+||+|..||...++.|++.+.||++..+||+.. ..+.+ +..+..+..+....+ .+...+.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 48999999999999999999999999999999998988533 33322 222221111111111 0100111
Q ss_pred CCCCC-H----HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCC
Q 035902 71 PTFVP-R----ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPE 144 (381)
Q Consensus 71 ~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~ 144 (381)
+.+.. . .++..-++.++++.+++...+. - + ..+ .....+.-.++ +.+.++++++|+|||+. +.
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~-g-s--f~~-p~~V~v~k~dg---~~~ii~aKnIiiATGSeV~~--- 187 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF-G-S--FLD-PNKVSVKKIDG---EDQIIKAKNIIIATGSEVTP--- 187 (506)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee-E-e--ecC-CceEEEeccCC---CceEEeeeeEEEEeCCccCC---
Confidence 11110 1 1223333444555554433221 0 0 111 12222333333 45789999999999996 43
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||++--...++.+...... +.-|++++|||+|.+|.|+..-+.++|.+||++.--+ .+.+..+.++++.+.+.|
T Consensus 188 ~PGI~IDekkIVSStgALsL-~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~~qr~L--- 262 (506)
T KOG1335|consen 188 FPGITIDEKKIVSSTGALSL-KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKAFQRVL--- 262 (506)
T ss_pred CCCeEecCceEEecCCccch-hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHHHHHHH---
Confidence 44654222335565555544 4469999999999999999999999999999999888 788888888877776665
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFEN 297 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~ 297 (381)
.+.++++..+ +...+.+ .+.+++
T Consensus 263 --------------------------------------------------~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ 292 (506)
T KOG1335|consen 263 --------------------------------------------------QKQGIKFKLGTKVTSATRNGDGPVEIEVEN 292 (506)
T ss_pred --------------------------------------------------HhcCceeEeccEEEEeeccCCCceEEEEEe
Confidence 3345555555 4444432 233332
Q ss_pred ---C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 298 ---G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 298 ---g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
+ ++++||++++++|++|.+..+-. +..|+ .|+.|++.++ ...++..|+||++||+..+++ .|..||..+
T Consensus 293 ak~~k~~tle~DvlLVsiGRrP~t~GLgl-e~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~ 370 (506)
T KOG1335|consen 293 AKTGKKETLECDVLLVSIGRRPFTEGLGL-EKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAA 370 (506)
T ss_pred cCCCceeEEEeeEEEEEccCcccccCCCh-hhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhhhchhh
Confidence 2 48999999999999999977655 66777 7889999998 566789999999999999988 778888888
Q ss_pred HHHhhh
Q 035902 369 ANDINL 374 (381)
Q Consensus 369 a~~i~~ 374 (381)
.+.|..
T Consensus 371 VE~i~g 376 (506)
T KOG1335|consen 371 VEGIAG 376 (506)
T ss_pred eeeecc
Confidence 877754
No 62
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=7.8e-30 Score=252.72 Aligned_cols=283 Identities=20% Similarity=0.251 Sum_probs=176.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||+.|+++|++|+|||+.+.+||..... . +.+....++.++.
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------I---------P~~rlp~e~l~~~ 593 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------I---------PEFRISAESIQKD 593 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------c---------cccCCCHHHHHHH
Confidence 799999999999999999999999999999998888753221 0 1111123444444
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.+..+|+++++++.. . +.+.+. ....||+||+|||++ +..+.++|... .++...++.
T Consensus 594 ie~l~~~GVe~~~g~~~----------d--~~ve~l-----~~~gYDaVIIATGA~~~~~l~I~G~~~---~v~~avefL 653 (1012)
T TIGR03315 594 IELVKFHGVEFKYGCSP----------D--LTVAEL-----KNQGYKYVILAIGAWKHGPLRLEGGGE---RVLKSLEFL 653 (1012)
T ss_pred HHHHHhcCcEEEEeccc----------c--eEhhhh-----hcccccEEEECCCCCCCCCCCcCCCCc---ceeeHHHHH
Confidence 45556678877665321 0 111111 345699999999998 45556666431 122222211
Q ss_pred C------CCCCCCCeEEEEcCCCCHHHHHHHHhhC-CC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHh
Q 035902 163 N------GGKFIGKNVLVVGCGNSGMEIAYDLSSC-GA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLS 234 (381)
Q Consensus 163 ~------~~~~~~~~v~viG~G~~~~e~a~~l~~~-g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (381)
. .....+++++|||||.+|+|+|..+.+. |. +|+++.|++...+|....++...+
T Consensus 654 ~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al----------------- 716 (1012)
T TIGR03315 654 RAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL----------------- 716 (1012)
T ss_pred HHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH-----------------
Confidence 1 1123589999999999999999998886 74 799999987434443332211111
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--eEEEcCC--cEeeccEEEEe
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--EVEFENG--KIEEFEAIIFA 309 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~v~~~~g--~~~~~D~vi~a 309 (381)
..|+.. ..... ...+..+++.+..- +...+.+ .....+| .++++|.||+|
T Consensus 717 --------eeGVe~----------~~~~~-------p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvA 771 (1012)
T TIGR03315 717 --------EDGVDF----------KELLS-------PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAA 771 (1012)
T ss_pred --------HcCCEE----------EeCCc-------eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEe
Confidence 111110 00000 00011111111100 0000111 1112233 36899999999
Q ss_pred cCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 310 TGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
+|.+|+... +. . .++ ++.+|++.+|.....++.|||||+||+..++. .|+.+|+.+|.+|.+.
T Consensus 772 iG~~Pnt~l-le-~-~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 772 VGEQVDTDL-LQ-K-NGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred cCCcCChHH-HH-h-cCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 999999864 34 3 555 68889999984446789999999999987655 8999999999999864
No 63
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=8.3e-30 Score=240.86 Aligned_cols=284 Identities=20% Similarity=0.221 Sum_probs=188.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+++|..|++.|.+|+|||+.+.+||.+... + +.+....++....
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~~ 199 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVIDRR 199 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHHHH
Confidence 789999999999999999999999999999998887754321 1 1122223455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC-
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY- 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~- 161 (381)
.+.+.++++++++++.+.. + +.... ....||+||+|||+. +..+.++|.+. .+ +....++
T Consensus 200 ~~~~~~~gv~~~~~~~v~~-~---------~~~~~------~~~~~d~vvlAtGa~~~~~l~ipG~~~-~g-V~~~~~~l 261 (471)
T PRK12810 200 IELMEAEGIEFRTNVEVGK-D---------ITAEE------LLAEYDAVFLGTGAYKPRDLGIPGRDL-DG-VHFAMDFL 261 (471)
T ss_pred HHHHHhCCcEEEeCCEECC-c---------CCHHH------HHhhCCEEEEecCCCCCCcCCCCCccC-CC-cEEHHHHH
Confidence 5667778988888775521 0 11111 234799999999998 77778888653 22 2221100
Q ss_pred ------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 162 ------------ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 162 ------------~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
.......+++++|||+|.+|+|+|..+.+.|. +|+.+.+.+ .|....... .
T Consensus 262 ~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~-~------------ 325 (471)
T PRK12810 262 IQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNKN-N------------ 325 (471)
T ss_pred HHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCccccccc-c------------
Confidence 11123468999999999999999999888886 688554333 111110000 0
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccch-hhhhhcCCCeEEccC--cceEeC--Ce---EE-----E
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVG-AMDKIRKGEIQVFPS--ITSINR--NE---VE-----F 295 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--v~~v~~--~~---v~-----~ 295 (381)
..+..... ..+.+++.+++++.+ +.++.. +. |. +
T Consensus 326 ---------------------------------~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~ 372 (471)
T PRK12810 326 ---------------------------------PWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL 372 (471)
T ss_pred ---------------------------------CCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence 00000000 123344556777665 666643 12 22 2
Q ss_pred cCC---------cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---Ccc
Q 035902 296 ENG---------KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GIS 362 (381)
Q Consensus 296 ~~g---------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~ 362 (381)
.+| +++++|.||+|+|.+|+...++. . .++ ++++|++.++.+.+.|+.|+||++||+.++.. .|+
T Consensus 373 ~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~-~-~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av 450 (471)
T PRK12810 373 GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-Q-FGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAI 450 (471)
T ss_pred cCCCccccCCceEEEECCEEEECcCcCCCchhhcc-c-cCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHH
Confidence 122 47999999999999999754554 3 555 77789888874466789999999999987654 799
Q ss_pred HHHHHHHHHhhhccccCC
Q 035902 363 IDAKNIANDINLALTDHQ 380 (381)
Q Consensus 363 ~~a~~~a~~i~~~l~~~~ 380 (381)
.+|+.+|.+|..+|....
T Consensus 451 ~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 451 AEGRQAARAIDAYLMGST 468 (471)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999997643
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=254.68 Aligned_cols=276 Identities=19% Similarity=0.225 Sum_probs=188.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||..|+++|++|+|||+.+.+||.... .++.+....++.+..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~------------------------gip~~rl~~e~~~~~ 486 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY------------------------GIPSFRLPRDIIDRE 486 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec------------------------cCCccCCCHHHHHHH
Confidence 78999999999999999999999999999999887764321 112223334666767
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC-
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY- 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~- 161 (381)
.+.++++|+++++++.+. .. +...+. .....||+||||||+. |+.+++||.+. .+ +++..++
T Consensus 487 ~~~l~~~Gv~~~~~~~vg--------~~--~~~~~l----~~~~~yDaViIATGa~~pr~l~IpG~~l-~g-V~~a~~fL 550 (1006)
T PRK12775 487 VQRLVDIGVKIETNKVIG--------KT--FTVPQL----MNDKGFDAVFLGVGAGAPTFLGIPGEFA-GQ-VYSANEFL 550 (1006)
T ss_pred HHHHHHCCCEEEeCCccC--------Cc--cCHHHH----hhccCCCEEEEecCCCCCCCCCCCCcCC-CC-cEEHHHHH
Confidence 777788899988876431 11 221111 0124589999999996 88888998642 22 3433221
Q ss_pred -------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 162 -------------ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 162 -------------~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.+.....+++++|||||.+|+|+|..+.++|. +|+++.|+.....|....+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e--------------- 615 (1006)
T PRK12775 551 TRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE--------------- 615 (1006)
T ss_pred HHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH---------------
Confidence 11122368999999999999999999999997 4888988763222221110
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEE----
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEF---- 295 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~---- 295 (381)
.+.+++.+|+++.. +.++.. + ++.+
T Consensus 616 -------------------------------------------~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~ 652 (1006)
T PRK12775 616 -------------------------------------------IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEME 652 (1006)
T ss_pred -------------------------------------------HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEE
Confidence 11223334444433 333321 1 1111
Q ss_pred -------------cCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCC----CCCCCCCCcEEEEeccc
Q 035902 296 -------------ENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNC----PNHWKGENGLYCAGFSR 355 (381)
Q Consensus 296 -------------~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~ifa~Gd~~ 355 (381)
.+| .++++|.||+|+|++|+.. ++. ...++ ++..|++.++. ....|+.|+|||+||++
T Consensus 653 l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~-~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~ 730 (1006)
T PRK12775 653 LGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI-ITQ-STPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIV 730 (1006)
T ss_pred ecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh-hhh-ccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcC
Confidence 112 3699999999999999975 333 32344 67788888873 24668999999999998
Q ss_pred cccc---CccHHHHHHHHHhhhccccC
Q 035902 356 TGLH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 356 ~~~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
.++. .|+.+|+.+|.+|+.+|..+
T Consensus 731 ~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 731 TGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7765 89999999999999998764
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=5.6e-29 Score=243.96 Aligned_cols=274 Identities=19% Similarity=0.239 Sum_probs=184.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+... . +.+....++...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------i---------p~~~l~~~~~~~ 382 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------I---------PAFKLDKSLLAR 382 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------C---------CCccCCHHHHHH
Confidence 3789999999999999999999999999999999888764321 1 111112345555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecC--
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSS-- 159 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~-- 159 (381)
..+.++++|+++++++.+.. . +...+ ....||.||+|||+. +..+.++|.+. .| ++...
T Consensus 383 ~~~~~~~~Gv~~~~~~~v~~--------~--i~~~~------~~~~~DavilAtGa~~~~~l~i~g~~~-~G-v~~a~~~ 444 (654)
T PRK12769 383 RREIFSAMGIEFELNCEVGK--------D--ISLES------LLEDYDAVFVGVGTYRSMKAGLPNEDA-PG-VYDALPF 444 (654)
T ss_pred HHHHHHHCCeEEECCCEeCC--------c--CCHHH------HHhcCCEEEEeCCCCCCCCCCCCCCCC-CC-eEEhHHH
Confidence 56667778988888876520 0 11111 123699999999998 44566777543 22 22110
Q ss_pred ------------CCCC--CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 160 ------------KYEN--GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 160 ------------~~~~--~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
.... .....+++++|||+|.+|+|+|..+.++|. +|++++|++...+|.....
T Consensus 445 l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e------------ 512 (654)
T PRK12769 445 LIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE------------ 512 (654)
T ss_pred HHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH------------
Confidence 0000 012457899999999999999999999986 6999999873333432211
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--C-C---eEEE-
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--R-N---EVEF- 295 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~-~---~v~~- 295 (381)
.+.+++.+|+++.. +.++. + + ++.+
T Consensus 513 ----------------------------------------------~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~ 546 (654)
T PRK12769 513 ----------------------------------------------VKNAREEGANFEFNVQPVALELNEQGHVCGIRFL 546 (654)
T ss_pred ----------------------------------------------HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEE
Confidence 11222333444333 33332 1 1 1111
Q ss_pred -----------------cCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCC---CCCCCCCcEEEEe
Q 035902 296 -----------------ENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCP---NHWKGENGLYCAG 352 (381)
Q Consensus 296 -----------------~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~ifa~G 352 (381)
..| .++++|.||+|+|+.|+...++. . .++ ++.+|++.++.. .++|+.|+|||+|
T Consensus 547 ~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~-~-~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaG 624 (654)
T PRK12769 547 RTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLE-S-HGVTVDKWGRIIADVESQYRYQTSNPKIFAGG 624 (654)
T ss_pred EEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccc-c-cCCcCCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence 012 26999999999999999644554 4 566 788899888732 2568999999999
Q ss_pred ccccccc---CccHHHHHHHHHhhhcccc
Q 035902 353 FSRTGLH---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 353 d~~~~~~---~a~~~a~~~a~~i~~~l~~ 378 (381)
|++.+.. .|+.+|+.+|++|+.+|..
T Consensus 625 D~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 625 DAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 9988765 7999999999999998864
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=5e-29 Score=234.69 Aligned_cols=272 Identities=18% Similarity=0.240 Sum_probs=185.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||+|+++|..|+++|.+|+|+|+.+.+||.+... + +.+....++.+..
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~~~ 197 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLSRR 197 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHHHH
Confidence 789999999999999999999999999999999888754321 1 1112224566666
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCCCCCCCcceeecCC--
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPGLGSFEGEYMHSSK-- 160 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g~~~~~~~~~~~~~-- 160 (381)
.+.++++|+++++++.+.. . +...+ ....||.||+|||+.+ ..++++|.+. ++ +.+..+
T Consensus 198 ~~~~~~~Gv~~~~~~~v~~--------~--~~~~~------~~~~~D~vilAtGa~~~~~~~i~g~~~-~g-V~~a~~~l 259 (467)
T TIGR01318 198 REIFTAMGIEFHLNCEVGR--------D--ISLDD------LLEDYDAVFLGVGTYRSMRGGLPGEDA-PG-VLQALPFL 259 (467)
T ss_pred HHHHHHCCCEEECCCEeCC--------c--cCHHH------HHhcCCEEEEEeCCCCCCcCCCCCcCC-CC-cEEHHHHH
Confidence 6777888999888876621 0 11111 1246999999999995 4567787653 22 222110
Q ss_pred ---------C---C--CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 161 ---------Y---E--NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 161 ---------~---~--~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
. . ......+++++|+|+|.+|++.|..+.++|. +|++++|++...+|....+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e------------- 326 (467)
T TIGR01318 260 IANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRRE------------- 326 (467)
T ss_pred HHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHH-------------
Confidence 0 0 0012357999999999999999999999985 7999999874334432221
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C-e---EEE--
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-E---VEF-- 295 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-~---v~~-- 295 (381)
.+.+++.+|+++.+ +.++.. + . +.+
T Consensus 327 ---------------------------------------------~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~ 361 (467)
T TIGR01318 327 ---------------------------------------------VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVR 361 (467)
T ss_pred ---------------------------------------------HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEE
Confidence 11122233444433 333321 0 0 111
Q ss_pred ------------------cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCC---CCCCCCCCcEEEEec
Q 035902 296 ------------------ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNC---PNHWKGENGLYCAGF 353 (381)
Q Consensus 296 ------------------~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~---~~~~~~~~~ifa~Gd 353 (381)
.+.+++++|.||+++|++|+...++. . .++ ++++|++.++. ..+.++.|+||++||
T Consensus 362 ~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~-~-~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD 439 (467)
T TIGR01318 362 TALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLA-G-HGITLDSWGRIITGDVSYLPYQTTNPKIFAGGD 439 (467)
T ss_pred EEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccccc-c-cCccCCCCCCEEeCCccccCccCCCCCEEEECC
Confidence 11247899999999999999644444 3 555 67788888872 245678999999999
Q ss_pred cccccc---CccHHHHHHHHHhhhccc
Q 035902 354 SRTGLH---GISIDAKNIANDINLALT 377 (381)
Q Consensus 354 ~~~~~~---~a~~~a~~~a~~i~~~l~ 377 (381)
+.+++. .|+.+|+.+|++|+.+|.
T Consensus 440 ~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 440 AVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 988764 799999999999998774
No 67
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.96 E-value=5.5e-29 Score=221.24 Aligned_cols=264 Identities=23% Similarity=0.291 Sum_probs=196.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
..++|||+|++|..|+..++..|. +++++-++..++- .....+++.. .....+..
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~py--dr~~Ls~~~~---------------------~~~~~~a~ 131 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPY--DRARLSKFLL---------------------TVGEGLAK 131 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcc--cchhccccee---------------------eccccccc
Confidence 579999999999999999999987 7888876654331 0000000000 01122233
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
...++.+.+++++++++.|+.++... +. |.+.+| +.++|++++||||+.++.|++||.+.. .+....+.
T Consensus 132 r~~e~Yke~gIe~~~~t~v~~~D~~~--K~--l~~~~G-----e~~kys~LilATGs~~~~l~~pG~~~~--nv~~irei 200 (478)
T KOG1336|consen 132 RTPEFYKEKGIELILGTSVVKADLAS--KT--LVLGNG-----ETLKYSKLIIATGSSAKTLDIPGVELK--NVFYLREI 200 (478)
T ss_pred cChhhHhhcCceEEEcceeEEeeccc--cE--EEeCCC-----ceeecceEEEeecCccccCCCCCcccc--ceeeeccH
Confidence 33445677799999999999999876 55 888888 899999999999999999999998732 23333332
Q ss_pred CCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH-HHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 ENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV-FAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
.+.. -.....++++|+|.+|+|+|..|...+.+||++.+.+ +.+|+... ++++.
T Consensus 201 eda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~~~i~~~------------------- 260 (478)
T KOG1336|consen 201 EDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFGPSIGQF------------------- 260 (478)
T ss_pred HHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhhHHHHHH-------------------
Confidence 2211 1147789999999999999999999999999999999 77775332 33333
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------eEEEcCCcEeeccEEE
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------EVEFENGKIEEFEAII 307 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~v~~~~g~~~~~D~vi 307 (381)
+.+.+++++|+++.+ +.++..+ .|.+.+|+++++|.|+
T Consensus 261 ----------------------------------~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv 306 (478)
T KOG1336|consen 261 ----------------------------------YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVV 306 (478)
T ss_pred ----------------------------------HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEE
Confidence 345557888888887 6666553 4788999999999999
Q ss_pred EecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
+.+|.+|++++ +. . ...+++.|.+.|+ ..++++.|||||+||++..+.
T Consensus 307 ~GiG~~p~t~~-~~-~-g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 307 VGIGIKPNTSF-LE-K-GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred Eeecccccccc-cc-c-cceecccCCEeeh-hceeeccCCcccccceeeccc
Confidence 99999999964 43 2 2338899999999 567789999999999987643
No 68
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=5.9e-29 Score=210.16 Aligned_cols=188 Identities=34% Similarity=0.673 Sum_probs=132.3
Q ss_pred EEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcc---cccCCCC---CC-----CCCCCCC
Q 035902 7 VIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQF---CELPHMP---FP-----SRTPTFV 74 (381)
Q Consensus 7 vIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~-----~~~~~~~ 74 (381)
+||||||+|+++|..|.++|.+ ++|||+++.+|+.|... +....+..+..+ +.++.+. +. .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 99999999999999742 111111222211 1111111 00 0123467
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC--CCCCCCCCCCCCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE--NGLIPEVPGLGSFE 152 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~--~~~~~~~~g~~~~~ 152 (381)
+..++.+|++++++++++.++++++|.++..++ +.|.|++.++ +.+++|+||+|||. .|..|.++| ..+
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~~-----~~~~a~~VVlAtG~~~~p~~p~~~g-~~~- 150 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRDG-----RTIRADRVVLATGHYSHPRIPDIPG-SAF- 150 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETTS------EEEEEEEEE---SSCSB---S-TT-GGC-
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEec-----ceeeeeeEEEeeeccCCCCcccccc-ccc-
Confidence 889999999999999999999999999999986 4599999886 78999999999997 488888888 222
Q ss_pred cceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcc
Q 035902 153 GEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVH 204 (381)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~ 204 (381)
...+|+.++.+...+.+++++|||+|.||+|++..|++.|++|++++|++.|
T Consensus 151 ~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 151 RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 2578998888878888999999999999999999999999999999999854
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=9.4e-28 Score=234.28 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=185.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||+|+++|..|++.|++|+|||+.+.+||.|... .+. +....++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~---------~~l~~~~~~~ 365 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPP---------FKLDKTVLSQ 365 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCc---------ccCCHHHHHH
Confidence 4789999999999999999999999999999999888865432 111 1112355555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeec---
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHS--- 158 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~--- 158 (381)
..+.++.+|+++++++++.. . +...+ ....||.|++|||+. +..+.++|.+. .| ++..
T Consensus 366 ~~~~~~~~Gv~~~~~~~v~~--------~--~~~~~------l~~~~DaV~latGa~~~~~~~i~g~~~-~g-v~~a~~~ 427 (639)
T PRK12809 366 RREIFTAMGIDFHLNCEIGR--------D--ITFSD------LTSEYDAVFIGVGTYGMMRADLPHEDA-PG-VIQALPF 427 (639)
T ss_pred HHHHHHHCCeEEEcCCccCC--------c--CCHHH------HHhcCCEEEEeCCCCCCCCCCCCCCcc-CC-cEeHHHH
Confidence 56677788999888876521 0 11111 124689999999998 45566777542 23 2211
Q ss_pred --------CCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 159 --------SKYEN-----GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 159 --------~~~~~-----~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
..... .....+++++|+|+|.+|++.|..+.++|. +|++++|++....|....++.
T Consensus 428 l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~---------- 497 (639)
T PRK12809 428 LTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV---------- 497 (639)
T ss_pred HHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH----------
Confidence 00100 112357999999999999999999988885 799999987332333222111
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC---C---eE---
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR---N---EV--- 293 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~---~---~v--- 293 (381)
..++.+++++.. +.++.. + ++
T Consensus 498 ------------------------------------------------~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~ 529 (639)
T PRK12809 498 ------------------------------------------------NAREEGVEFQFNVQPQYIACDEDGRLTAVGLI 529 (639)
T ss_pred ------------------------------------------------HHHHcCCeEEeccCCEEEEECCCCeEEEEEEE
Confidence 112223333332 333321 0 01
Q ss_pred ---------------EE--cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCC---CCCCCCCcEEEEe
Q 035902 294 ---------------EF--ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCP---NHWKGENGLYCAG 352 (381)
Q Consensus 294 ---------------~~--~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~ifa~G 352 (381)
.. .+..++++|.||+|+|+.|+...++. . .++ ++++|++.++.. .++|+.|+|||+|
T Consensus 530 ~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~-~-~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~G 607 (639)
T PRK12809 530 RTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQ-G-SGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGG 607 (639)
T ss_pred EEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccccc-c-cCcccCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence 11 11237899999999999998644554 4 566 778898888731 3568999999999
Q ss_pred ccccccc---CccHHHHHHHHHhhhccccC
Q 035902 353 FSRTGLH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 353 d~~~~~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
|+..+.. .|+.+|+.+|++|+.+|++.
T Consensus 608 D~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 608 DAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9988765 79999999999999998765
No 70
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.95 E-value=2.2e-27 Score=222.85 Aligned_cols=272 Identities=20% Similarity=0.320 Sum_probs=185.9
Q ss_pred HHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHHH-HHHHHHHhCC
Q 035902 17 ATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFINY-VDNYVSQMGI 92 (381)
Q Consensus 17 ~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 92 (381)
+||..|++. ..+|+|||+++.+... . +.++. ....... ..++..+ .+++.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~--~--------------~~l~~-----~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA--N--------------CGLPY-----VIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE--c--------------CCCCe-----EeccccCCHHHcccCCHHHHHHhcCC
Confidence 478888876 4689999999843210 0 00000 0011111 2333333 2345577899
Q ss_pred ccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE--eCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCC------
Q 035902 93 NPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV--ARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENG------ 164 (381)
Q Consensus 93 ~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~--~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~------ 164 (381)
+++++++|++++.++ +. +.+.++..+ ..+. ||+||+|||+.|..|.+||++. ..++......+.
T Consensus 60 ~~~~~~~V~~id~~~--~~--v~~~~~~~~--~~~~~~yd~lIiATG~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~ 131 (427)
T TIGR03385 60 DVKTNHEVIEVNDER--QT--VVVRNNKTN--ETYEESYDYLILSPGASPIVPNIEGINL--DIVFTLRNLEDTDAIKQY 131 (427)
T ss_pred eEEecCEEEEEECCC--CE--EEEEECCCC--CEEecCCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHH
Confidence 988899999998755 44 444432111 3466 9999999999999999998752 123333222111
Q ss_pred -CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce-echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 165 -GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV-LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 165 -~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+ .+..+.++...
T Consensus 132 l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~~~~~~~~~~~~~-------------------------- 184 (427)
T TIGR03385 132 IDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RILNKLFDEEMNQI-------------------------- 184 (427)
T ss_pred HhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccCccccCHHHHHH--------------------------
Confidence 01357899999999999999999999999999999987 33 23222222211
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe--EEEcCCcEeeccEEEEecCCCCCcch
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE--VEFENGKIEEFEAIIFATGYKSTVRN 318 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~--v~~~~g~~~~~D~vi~a~G~~p~~~~ 318 (381)
+.+.+++.+|+++.+ +++++.++ +.+.+|+++++|.+++|+|.+|+.+.
T Consensus 185 ---------------------------~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 237 (427)
T TIGR03385 185 ---------------------------VEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSEL 237 (427)
T ss_pred ---------------------------HHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHH
Confidence 234456678888876 88887653 36678889999999999999999863
Q ss_pred hccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-------------ccCccHHHHHHHHHhhhc
Q 035902 319 WLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-------------LHGISIDAKNIANDINLA 375 (381)
Q Consensus 319 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-------------~~~a~~~a~~~a~~i~~~ 375 (381)
+. . .++ ++++|++.+| +.++++.|+|||+|||... ...|..||+.+|+||.+.
T Consensus 238 -l~-~-~gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 238 -AK-D-SGLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred -HH-h-cCcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 43 3 565 6778999998 4567889999999999752 128889999999999864
No 71
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.3e-27 Score=233.00 Aligned_cols=274 Identities=16% Similarity=0.196 Sum_probs=176.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||+|++|+++|..|+++|.+|+|+|+.+..||.+... . +.+....++...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~~ 338 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALDK 338 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHHH
Confidence 3789999999999999999999999999999998777643211 1 111112344444
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.++++++++++++.|.. + +..+. ....||+||+|||+. ++.++++|.+. .+ ++...++
T Consensus 339 ~~~~~~~~gv~~~~~~~v~~-~---------~~~~~------~~~~yD~vilAtGa~~~r~l~i~G~~~-~g-v~~a~~~ 400 (604)
T PRK13984 339 DIAFIEALGVKIHLNTRVGK-D---------IPLEE------LREKHDAVFLSTGFTLGRSTRIPGTDH-PD-VIQALPL 400 (604)
T ss_pred HHHHHHHCCcEEECCCEeCC-c---------CCHHH------HHhcCCEEEEEcCcCCCccCCCCCcCC-cC-eEeHHHH
Confidence 45667778998888877621 0 11111 235799999999998 67788888653 22 2222221
Q ss_pred CC---------C-CCCCCCeEEEEcCCCCHHHHHHHHhhCCC------eeEEEEec-CcceechhhHHHHHHHHhhCcHH
Q 035902 162 EN---------G-GKFIGKNVLVVGCGNSGMEIAYDLSSCGA------CTSIVVRG-PVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 162 ~~---------~-~~~~~~~v~viG~G~~~~e~a~~l~~~g~------~v~~i~r~-~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
.. . ....+++++|||||.+|+|+|..+.+++. +|+++... ....+|....++..
T Consensus 401 l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~--------- 471 (604)
T PRK13984 401 LREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEE--------- 471 (604)
T ss_pred HHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHH---------
Confidence 11 0 11247899999999999999999998753 67776432 11122222111100
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C---eEE---
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N---EVE--- 294 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~---~v~--- 294 (381)
+.+.+|+++.+ +.++.. + ++.
T Consensus 472 -------------------------------------------------~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~ 502 (604)
T PRK13984 472 -------------------------------------------------GLEEGVVIYPGWGPMEVVIENDKVKGVKFKK 502 (604)
T ss_pred -------------------------------------------------HHHcCCEEEeCCCCEEEEccCCEEEEEEEEE
Confidence 01122222222 111110 0 011
Q ss_pred --------------E--cCCcEeeccEEEEecCCCCCcchhccccC-CcccccCCCCCCCCCCCCCCCCcEEEEeccccc
Q 035902 295 --------------F--ENGKIEEFEAIIFATGYKSTVRNWLKRAD-KDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357 (381)
Q Consensus 295 --------------~--~~g~~~~~D~vi~a~G~~p~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~ 357 (381)
. .+++++++|.||+|+|++|+++.+.. +. .++-.++|.+.+| +.++|+.|+|||+||++.+
T Consensus 503 ~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~-~~~~~l~~~~G~i~vd-~~~~Ts~~gVfAaGD~~~~ 580 (604)
T PRK13984 503 CVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPE-ELKSKLEFVRGRILTN-EYGQTSIPWLFAGGDIVHG 580 (604)
T ss_pred EeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhh-hhccCccccCCeEEeC-CCCccCCCCEEEecCcCCc
Confidence 0 12347999999999999999865432 21 1232246888888 5677999999999999987
Q ss_pred cc--CccHHHHHHHHHhhhcccc
Q 035902 358 LH--GISIDAKNIANDINLALTD 378 (381)
Q Consensus 358 ~~--~a~~~a~~~a~~i~~~l~~ 378 (381)
+. .|+.+|+.+|++|+.+|..
T Consensus 581 ~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 581 PDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 65 8999999999999998863
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=1.7e-26 Score=214.94 Aligned_cols=322 Identities=17% Similarity=0.151 Sum_probs=182.8
Q ss_pred cccEEEECCCHHHHHHHHHHHh--CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNN--LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~--~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.++|+||||||||++||..|++ .|.+|+|||+.+.++|..+.... +.++....+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v~ 82 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNVT 82 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHHH
Confidence 3789999999999999999987 69999999999988875443210 2233344566
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCCCCCCCcceeecC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g~~~~~~~~~~~~ 159 (381)
..+.+.++..++.++.+..+. .. +.+.+. ...||.||+|||+.+ ..+.+||.+. .+ ++...
T Consensus 83 ~~~~~~~~~~~v~~~~nv~vg--------~d--vtl~~L------~~~yDaVIlAtGa~~~~~l~IpG~d~-~g-V~~a~ 144 (491)
T PLN02852 83 NQFSRVATDDRVSFFGNVTLG--------RD--VSLSEL------RDLYHVVVLAYGAESDRRLGIPGEDL-PG-VLSAR 144 (491)
T ss_pred HHHHHHHHHCCeEEEcCEEEC--------cc--ccHHHH------hhhCCEEEEecCCCCCCCCCCCCCCC-CC-eEEHH
Confidence 666777777777776665441 11 333321 246999999999984 6778888653 22 33322
Q ss_pred CCC----------CC--CCCCCCeEEEEcCCCCHHHHHHHHhhC--------------------C-CeeEEEEecCccee
Q 035902 160 KYE----------NG--GKFIGKNVLVVGCGNSGMEIAYDLSSC--------------------G-ACTSIVVRGPVHVL 206 (381)
Q Consensus 160 ~~~----------~~--~~~~~~~v~viG~G~~~~e~a~~l~~~--------------------g-~~v~~i~r~~~~~~ 206 (381)
++. .. ....+++++|||+|++|+|+|..|.+. + .+|+++.|+...-.
T Consensus 145 ~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~ 224 (491)
T PLN02852 145 EFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQA 224 (491)
T ss_pred HHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhC
Confidence 210 00 112579999999999999999998875 5 46999999983222
Q ss_pred chhhHHHHHHHHh------hCcHHH---------------HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCcc
Q 035902 207 TREIVFAGMLLLK------FLPCKL---------------VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPT 265 (381)
Q Consensus 207 p~~~~~~~~~~~~------~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (381)
+....++.....- .-+..+ ..+....+.+....... . ...++.-..+.+...|.
T Consensus 225 ~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~---~--~~~~~~~v~~~f~~sP~ 299 (491)
T PLN02852 225 ACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKC---A--PSGGQRELHFVFFRNPT 299 (491)
T ss_pred CCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhccc---c--cCCCCceEEEEccCCCe
Confidence 2222222211100 000000 00001111100000000 0 00000000111111110
Q ss_pred ccchhhhhhc--C--CC---eEEccC-cceEe--CCeEEEcCC--cEeeccEEEEecCCC--CCcchhccccCCcc-ccc
Q 035902 266 IDVGAMDKIR--K--GE---IQVFPS-ITSIN--RNEVEFENG--KIEEFEAIIFATGYK--STVRNWLKRADKDF-FDE 330 (381)
Q Consensus 266 ~~~~~~~~~~--~--~~---v~~~~~-v~~v~--~~~v~~~~g--~~~~~D~vi~a~G~~--p~~~~~~~~~~~~~-~~~ 330 (381)
+.+. + ++ +++... +..-+ +......+| ++++||.||.++|++ |.....+. ...++ .+.
T Consensus 300 ------ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n~ 372 (491)
T PLN02852 300 ------RFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPNV 372 (491)
T ss_pred ------EEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeECC
Confidence 0000 0 01 111100 00000 000001123 368999999999998 44432233 32444 677
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 331 YGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 331 ~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|++.++ +...|+.||||++||+..++. .++.+|..++++|..++..
T Consensus 373 ~G~V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 373 HGRVLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CceEEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 8999887 345688999999999998765 8999999999999998754
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-27 Score=201.18 Aligned_cols=285 Identities=20% Similarity=0.230 Sum_probs=209.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
|||+||||||||.++|.+.+++|++.-++-. .+||.... .|.. -++...+ .....++...+
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvld----T~~I------ENfIsv~-------~teGpkl~~al 272 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLD----TMGI------ENFISVP-------ETEGPKLAAAL 272 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeecc----ccch------hheeccc-------cccchHHHHHH
Confidence 8999999999999999999999998766542 34442111 0100 0111111 23456888888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCC-CCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDEN-AKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
++-.++|.+++..-.+..++.+... .+...|++.+| -.++++.+|+|||++=+-.++||.++|..+-+.+|..+
T Consensus 273 e~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG-----avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHC 347 (520)
T COG3634 273 EAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG-----AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHC 347 (520)
T ss_pred HHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC-----ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCC
Confidence 8889999999877777777776432 24677999988 78999999999999966668899988887788999999
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+...+.+|+++|||||++|+|+|..|+-.-..||++.-.+ .... +.+
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~-----eLkA---------------D~V------------- 394 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP-----ELKA---------------DAV------------- 394 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch-----hhhh---------------HHH-------------
Confidence 9999999999999999999999999999888899986444 1110 000
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC-----eEEEc---CC--cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN-----EVEFE---NG--KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~-----~v~~~---~g--~~~~~D~vi~a 309 (381)
+.+.+++ .|++++++ .+++.++ ++... +| ..++-+-|++-
T Consensus 395 ---------------------------Lq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVq 447 (520)
T COG3634 395 ---------------------------LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQ 447 (520)
T ss_pred ---------------------------HHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEE
Confidence 1233333 57888887 6777665 33333 23 35678889999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcc
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLAL 376 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l 376 (381)
+|.-||+ .|++ + .--+++.|.+.+| ....|+.|+|||+|||...+. .++.+|..++-....+|
T Consensus 448 IGL~PNT-~WLk-g-~vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 448 IGLLPNT-EWLK-G-AVELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred EecccCh-hHhh-c-hhhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhh
Confidence 9999999 6888 5 3228899999999 566799999999999987655 55555555554444433
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=9.2e-27 Score=220.16 Aligned_cols=306 Identities=19% Similarity=0.185 Sum_probs=179.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+++|..|++.|.+|+|||+.+.+||.... .. +.+....++....
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---------------gi---------p~~~~~~~~~~~~ 199 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---------------GI---------PNMKLDKAIVDRR 199 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---------------cC---------CCccCCHHHHHHH
Confidence 68999999999999999999999999999999877764321 11 1111223455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCC--
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSK-- 160 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~-- 160 (381)
.+.++++|+++++++.+. .+ +.. +. ....||.||+|||+. |..+.++|.+. .+ +....+
T Consensus 200 ~~~~~~~Gv~~~~~~~v~-~~---------~~~-~~-----~~~~~d~VilAtGa~~~~~l~i~G~~~-~g-V~~~~~~l 261 (485)
T TIGR01317 200 IDLLSAEGIDFVTNTEIG-VD---------ISA-DE-----LKEQFDAVVLAGGATKPRDLPIPGREL-KG-IHYAMEFL 261 (485)
T ss_pred HHHHHhCCCEEECCCEeC-Cc---------cCH-HH-----HHhhCCEEEEccCCCCCCcCCCCCcCC-CC-cEeHHHHH
Confidence 566677899988887763 11 111 10 235699999999998 88888988653 32 221110
Q ss_pred ------CC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 161 ------YE-------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 161 ------~~-------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
.. ......+++++|||+|.+|+|+|..+.+++ .+|+++.+.+ ........+ ..++.+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~-~~~~~~~~~------~~~~~~~~ 334 (485)
T TIGR01317 262 PSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP-KPPEARAKD------NPWPEWPR 334 (485)
T ss_pred HHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC-CChhhcccc------cCCCccch
Confidence 00 011246899999999999999988888877 4799998876 222110000 00000000
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhc-C--CCeEEcc-C-cc-eEeCCe---EEE-c
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-K--GEIQVFP-S-IT-SINRNE---VEF-E 296 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~-~-v~-~v~~~~---v~~-~ 296 (381)
..-....... .....++. .. .+... ...+. + +.+.-+. . ++ ..++++ ... .
T Consensus 335 ~~e~~~a~~e---~~~~~gv~-----~~----~~~~~-------~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~ 395 (485)
T TIGR01317 335 VYRVDYAHEE---AAAHYGRD-----PR----EYSIL-------TKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIP 395 (485)
T ss_pred hhhhHHHHHh---hhhhcCcc-----ce----EEecC-------cEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecC
Confidence 0000000000 00000000 00 00000 00000 0 0111000 0 00 000011 111 1
Q ss_pred -CCcEeeccEEEEecCCC-CCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHH
Q 035902 297 -NGKIEEFEAIIFATGYK-STVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIAN 370 (381)
Q Consensus 297 -~g~~~~~D~vi~a~G~~-p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~ 370 (381)
+.+++++|.||+|+|.. |+.+ ++. . .++ ++++|++.++...++|+.|||||+||++++.. .|+.+|+.+|.
T Consensus 396 g~~~~i~~D~Vi~AiG~~~p~~~-~~~-~-~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~ 472 (485)
T TIGR01317 396 GSEEVFEADLVLLAMGFVGPEQI-LLD-D-FGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAA 472 (485)
T ss_pred CceEEEECCEEEEccCcCCCccc-ccc-c-cCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHH
Confidence 12379999999999996 7774 444 3 555 57788886654567899999999999987654 89999999999
Q ss_pred HhhhccccCC
Q 035902 371 DINLALTDHQ 380 (381)
Q Consensus 371 ~i~~~l~~~~ 380 (381)
+|+.+|.+.+
T Consensus 473 ~i~~~L~g~~ 482 (485)
T TIGR01317 473 AVDRYLMGSS 482 (485)
T ss_pred HHHHHHhcCC
Confidence 9999997654
No 75
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.4e-26 Score=192.95 Aligned_cols=315 Identities=17% Similarity=0.193 Sum_probs=203.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC--CCCCCCcCCC-------CCCCeeeecCCcc----ccc--CCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE--DCSASLWKKR-------AYDRMKLHLAKQF----CEL--PHMPFP 67 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~--~~~g~~~~~~-------~~~~~~~~~~~~~----~~~--~~~~~~ 67 (381)
+||.+|||||.+|++||.+++..|.+|.++|-- .-.|..|-.. +.++-.++...-. ... ..+..+
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~~ 98 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNVD 98 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 489999999999999999999999999999932 2234455431 2222111111100 000 011111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE----EEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 68 SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW----IIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~----~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+. ..-+....+.+..+.-.+..+--.+..-+-..+...+..+.| .+...+. .++.+.+++++++||||.+|+.|
T Consensus 99 e~-~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~-~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 99 EQ-KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK-KGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred cc-cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecC-CCceEEeecceEEEEecCCCCCC
Confidence 10 112334556666666655543222211111112221111222 1333222 22457899999999999999999
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||..++ .+++.+.+.... .+.+.+|||+|+.|.|+|.+|+-.|.+|+++.|+ -++..++.+++..+.+++.
T Consensus 177 ~IpG~~Ey---~ITSDDlFsl~~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS--I~LrGFDqdmae~v~~~m~- 249 (503)
T KOG4716|consen 177 DIPGAKEY---GITSDDLFSLPY-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS--ILLRGFDQDMAELVAEHME- 249 (503)
T ss_pred CCCCceee---eecccccccccC-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE--eecccccHHHHHHHHHHHH-
Confidence 99997765 477777766544 6888899999999999999999999999999998 5778888888888877662
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCCeEE--E---c-
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRNEVE--F---E- 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~~v~--~---~- 296 (381)
..|+++.+. +++- |+.++..++. . +
T Consensus 250 -------------------~~Gikf~~~-----------------------------~vp~~Veq~~~g~l~v~~k~t~t 281 (503)
T KOG4716|consen 250 -------------------ERGIKFLRK-----------------------------TVPERVEQIDDGKLRVFYKNTNT 281 (503)
T ss_pred -------------------HhCCceeec-----------------------------ccceeeeeccCCcEEEEeecccc
Confidence 333321100 0111 3444443321 1 1
Q ss_pred -CCcEeeccEEEEecCCCCCcchhccccCCcc-cc-cCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHH
Q 035902 297 -NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FD-EYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIA 369 (381)
Q Consensus 297 -~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a 369 (381)
++-+.++|.|+||+|+++.+..+.. ++.|+ .+ ..|-+.++ ....++.|+|||+||+.-+.. .|+..|+.+|
T Consensus 282 ~~~~~~~ydTVl~AiGR~~~~~~l~L-~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 282 GEEGEEEYDTVLWAIGRKALTDDLNL-DNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLA 359 (503)
T ss_pred cccccchhhhhhhhhccccchhhcCC-CccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhchHHH
Confidence 1225679999999999999987766 76787 43 56778887 466799999999999987643 9999999999
Q ss_pred HHhhhcc
Q 035902 370 NDINLAL 376 (381)
Q Consensus 370 ~~i~~~l 376 (381)
+.+..--
T Consensus 360 ~Rlf~gs 366 (503)
T KOG4716|consen 360 RRLFAGS 366 (503)
T ss_pred HHHhcCc
Confidence 9987643
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=1e-26 Score=224.60 Aligned_cols=273 Identities=21% Similarity=0.271 Sum_probs=180.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||+|+++|..|++.|.+|+++|+.+.+||.+... . +.+.-..++.+.-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~~ 193 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------I---------PAYRLPREVLDAE 193 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------C---------CCccCCHHHHHHH
Confidence 689999999999999999999999999999999888754321 1 1111123444444
Q ss_pred HHHHHHhCCccccccEE-EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 84 DNYVSQMGINPRYHRSV-ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
.+.+.++|+++.+++.+ .++..+ . ....||+||+|+|+. +....+++.+. .+ +.....+
T Consensus 194 l~~~~~~Gv~~~~~~~~~~~~~~~-----------~------~~~~~D~Vi~AtG~~~~~~~~i~g~~~-~g-v~~~~~~ 254 (564)
T PRK12771 194 IQRILDLGVEVRLGVRVGEDITLE-----------Q------LEGEFDAVFVAIGAQLGKRLPIPGEDA-AG-VLDAVDF 254 (564)
T ss_pred HHHHHHCCCEEEeCCEECCcCCHH-----------H------HHhhCCEEEEeeCCCCCCcCCCCCCcc-CC-cEEHHHH
Confidence 45566678887776654 221110 0 112489999999998 44556666432 22 2221111
Q ss_pred C-----CCCCCCCCeEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 E-----NGGKFIGKNVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~-----~~~~~~~~~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
. ......+++++|+|+|.+|++.+..+.+++ .+|+++.|.+...++.....
T Consensus 255 l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~----------------------- 311 (564)
T PRK12771 255 LRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEE----------------------- 311 (564)
T ss_pred HHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHH-----------------------
Confidence 1 112345899999999999999999999988 67999998873222221111
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe----------EEE----c---
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE----------VEF----E--- 296 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~----------v~~----~--- 296 (381)
.+...+.+++++.. +.++..+. +.+ +
T Consensus 312 -----------------------------------~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~ 356 (564)
T PRK12771 312 -----------------------------------IEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGR 356 (564)
T ss_pred -----------------------------------HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCC
Confidence 11112234444433 44443210 111 1
Q ss_pred ----CC--cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 297 ----NG--KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 297 ----~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
+| .++++|.||+|+|+.|+.. ++. +..++.+++|++.+|...+.++.||||++||+..++. .|+.+|+.
T Consensus 357 ~~~~~g~~~~i~~D~Vi~A~G~~p~~~-~~~-~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~ 434 (564)
T PRK12771 357 PSPVTGEEETLEADLVVLAIGQDIDSA-GLE-SVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKK 434 (564)
T ss_pred eeecCCceEEEECCEEEECcCCCCchh-hhh-hccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHH
Confidence 22 4799999999999999875 343 3234446789999984466789999999999987654 89999999
Q ss_pred HHHHhhhccccC
Q 035902 368 IANDINLALTDH 379 (381)
Q Consensus 368 ~a~~i~~~l~~~ 379 (381)
+|.+|+..|...
T Consensus 435 aA~~i~~~L~g~ 446 (564)
T PRK12771 435 AARNIDAFLGGE 446 (564)
T ss_pred HHHHHHHHHcCC
Confidence 999999988654
No 77
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=3.6e-25 Score=225.21 Aligned_cols=281 Identities=18% Similarity=0.163 Sum_probs=187.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+||||||||++||..+++.|.+|+|||+++.+||.+.... . ..+ ..+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---------------~------~~~-g~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---------------E------TID-GKPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---------------c------ccC-CccHHHHHHH
Confidence 47999999999999999999999999999999998887553210 0 001 1223344444
Q ss_pred HHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEe--------ec-CCCceEEEEeCEEEEccCCCCCCCCCCCCCCCC
Q 035902 83 VDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAK--------NT-ALDAYEEYVARYLVVATGENGLIPEVPGLGSFE 152 (381)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~--------~~-~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~ 152 (381)
+.+.++.+ ++.++.+++|.++.... ....+... .+ .......++||.||||||+.+..|+++|.+. +
T Consensus 221 ~~~~l~~~~~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~-p 297 (985)
T TIGR01372 221 TVAELTAMPEVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR-P 297 (985)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC-C
Confidence 44445445 58888889898875321 11111100 00 0011236899999999999999888988754 3
Q ss_pred cceeecC---CCCCC-CCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 153 GEYMHSS---KYENG-GKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 153 ~~~~~~~---~~~~~-~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
+ ++... .+... ....+++++|+|+|.+|+|+|..|++.|. .|+++.+++ .+.+
T Consensus 298 g-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~~~-------------------- 355 (985)
T TIGR01372 298 G-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA-DVSP-------------------- 355 (985)
T ss_pred C-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc-chhH--------------------
Confidence 3 22221 11111 12357999999999999999999999995 578887665 2111
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEc----C
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFE----N 297 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~----~ 297 (381)
.+.+.+++.+|+++.+ +.++.++ +|.+. +
T Consensus 356 -----------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~ 394 (985)
T TIGR01372 356 -----------------------------------------EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGA 394 (985)
T ss_pred -----------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCc
Confidence 0134456678888877 7777654 34554 4
Q ss_pred CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc--CccHHHHHHHHHhhh
Q 035902 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH--GISIDAKNIANDINL 374 (381)
Q Consensus 298 g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~--~a~~~a~~~a~~i~~ 374 (381)
+++++||.|++++|++|++..... .+. +..+.......+ .++.|+||++||+.+... .|..+|..+|.+|+.
T Consensus 395 ~~~i~~D~V~va~G~~Pnt~L~~~---lg~~~~~~~~~~~~~~--~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~ 469 (985)
T TIGR01372 395 GQRLEADALAVSGGWTPVVHLFSQ---RGGKLAWDAAIAAFLP--GDAVQGCILAGAANGLFGLAAALADGAAAGAAAAR 469 (985)
T ss_pred eEEEECCEEEEcCCcCchhHHHHh---cCCCeeeccccCceec--CCCCCCeEEeeccCCccCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999965433 222 221111111101 155799999999987655 899999999999987
Q ss_pred cc
Q 035902 375 AL 376 (381)
Q Consensus 375 ~l 376 (381)
.+
T Consensus 470 ~l 471 (985)
T TIGR01372 470 AA 471 (985)
T ss_pred Hc
Confidence 66
No 78
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.93 E-value=4.3e-25 Score=205.51 Aligned_cols=285 Identities=19% Similarity=0.197 Sum_probs=203.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
|...+++|||.|.+|..+..++++. -++++++...+... |+...++. .++.-.+.+
T Consensus 1 m~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~--------------vl~~~~~~e 59 (793)
T COG1251 1 MKKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSS--------------VLAGEKTAE 59 (793)
T ss_pred CCceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeecc--------------ccCCCccHH
Confidence 6668899999999999999999984 45899998877543 22222111 111112233
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
++.-.-..+.++.+++++.+..|+.++.+. +. |.++.+ ..+.||.||+||||.|+++++||...+. ++.
T Consensus 60 di~l~~~dwy~~~~i~L~~~~~v~~idr~~--k~--V~t~~g-----~~~~YDkLilATGS~pfi~PiPG~~~~~--v~~ 128 (793)
T COG1251 60 DISLNRNDWYEENGITLYTGEKVIQIDRAN--KV--VTTDAG-----RTVSYDKLIIATGSYPFILPIPGSDLPG--VFV 128 (793)
T ss_pred HHhccchhhHHHcCcEEEcCCeeEEeccCc--ce--EEccCC-----cEeecceeEEecCccccccCCCCCCCCC--eeE
Confidence 444444566777899999999999999876 55 888887 8999999999999999999999987532 333
Q ss_pred cCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceec-hhhHHHHHHHHhhCcHHHHHHHHH
Q 035902 158 SSKYENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLT-REIVFAGMLLLKFLPCKLVDFIVV 231 (381)
Q Consensus 158 ~~~~~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p-~~~~~~~~~~~~~l~~~~~~~~~~ 231 (381)
..++.+.. ....++.+|||||..|+|+|..|...|.++++++-.+ ++.- +.+..-+..
T Consensus 129 ~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD~~ag~l--------------- 192 (793)
T COG1251 129 YRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLDRTAGRL--------------- 192 (793)
T ss_pred EecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhhhHHHHH---------------
Confidence 33332211 1245668999999999999999999999999997666 2211 111111111
Q ss_pred HHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC----CeEEEcCCcEeeccE
Q 035902 232 MLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR----NEVEFENGKIEEFEA 305 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~----~~v~~~~g~~~~~D~ 305 (381)
+.+.+.+.+++++.+ ..++.+ .++.+.||+.+++|.
T Consensus 193 --------------------------------------L~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~ 234 (793)
T COG1251 193 --------------------------------------LRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADL 234 (793)
T ss_pred --------------------------------------HHHHHHhhcceeecccchhhhhcCcceeeEeecCCCccccee
Confidence 234455666666665 333332 378899999999999
Q ss_pred EEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-------cCccHHHHHHHHHhhhccc
Q 035902 306 IIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------HGISIDAKNIANDINLALT 377 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------~~a~~~a~~~a~~i~~~l~ 377 (381)
|++|+|++||... .. . .|+ +++ | +.+| ..++|+.|+|||+|.|+.-. .-+..||+.+|+++.....
T Consensus 235 VV~a~GIrPn~el-a~-~-aGlavnr-G-Ivvn-d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 235 VVMAVGIRPNDEL-AK-E-AGLAVNR-G-IVVN-DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred EEEecccccccHh-HH-h-cCcCcCC-C-eeec-ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 9999999999853 33 2 777 554 6 5555 38899999999999996431 2778999999999988654
No 79
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.93 E-value=9.1e-25 Score=190.96 Aligned_cols=291 Identities=15% Similarity=0.110 Sum_probs=194.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+++|+|+|+|.+|++++..|-..-++|++|++...+--+| + .|...-+.....-+.+.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTP---------------------L-LpS~~vGTve~rSIvEP 112 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTP---------------------L-LPSTTVGTVELRSIVEP 112 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEee---------------------c-cCCccccceeehhhhhh
Confidence 4789999999999999999998899999999886322111 1 00010112223345666
Q ss_pred HHHHHHHhCCc-cccccEEEEEEEeCCCCeEEEEEeec---CCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 83 VDNYVSQMGIN-PRYHRSVESASYDENAKAWIIVAKNT---ALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~v~~~~~---~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
+...+++.+.. ..+..+..+++++. +. |++... ....+..+.|||||+|+|+.++.+++||..+........
T Consensus 113 Ir~i~r~k~~~~~y~eAec~~iDp~~--k~--V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv 188 (491)
T KOG2495|consen 113 IRAIARKKNGEVKYLEAECTKIDPDN--KK--VHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEV 188 (491)
T ss_pred HHHHhhccCCCceEEecccEeecccc--cE--EEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhh
Confidence 66666654323 24556677777765 44 443321 113456799999999999999999999987642111111
Q ss_pred ---CCC-------------CCCCC---CCCCeEEEEcCCCCHHHHHHHHhhC--------------CCeeEEEEecCcce
Q 035902 159 ---SKY-------------ENGGK---FIGKNVLVVGCGNSGMEIAYDLSSC--------------GACTSIVVRGPVHV 205 (381)
Q Consensus 159 ---~~~-------------~~~~~---~~~~~v~viG~G~~~~e~a~~l~~~--------------g~~v~~i~r~~~~~ 205 (381)
.++ ....+ ..--+++|||||++|+|+|.+|+.. -.+||++...+ .+
T Consensus 189 ~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d-~i 267 (491)
T KOG2495|consen 189 EDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD-HI 267 (491)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch-hH
Confidence 000 00011 1223589999999999999999862 24789999888 77
Q ss_pred echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-
Q 035902 206 LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS- 284 (381)
Q Consensus 206 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 284 (381)
++.++..+..++.+.+ .+.+|.+..+
T Consensus 268 L~mFdkrl~~yae~~f-----------------------------------------------------~~~~I~~~~~t 294 (491)
T KOG2495|consen 268 LNMFDKRLVEYAENQF-----------------------------------------------------VRDGIDLDTGT 294 (491)
T ss_pred HHHHHHHHHHHHHHHh-----------------------------------------------------hhccceeeccc
Confidence 7777766665554443 5667777777
Q ss_pred -cceEeCCeEEEcCC----cEeeccEEEEecCCCCCcchhccccCCcccccCC--CCCCCCCCCCCCCCcEEEEeccccc
Q 035902 285 -ITSINRNEVEFENG----KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYG--MPKRNCPNHWKGENGLYCAGFSRTG 357 (381)
Q Consensus 285 -v~~v~~~~v~~~~g----~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ifa~Gd~~~~ 357 (381)
|..++++.+....+ ++++.-.++|+||..|-+ +.. ....-+++.| .+.+|.-....+.+||||+|||+.-
T Consensus 295 ~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k-~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~ 371 (491)
T KOG2495|consen 295 MVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIK-DLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQ 371 (491)
T ss_pred EEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhh-hHhhcCCccCceeeeeeceeeccCcCceEEecccccc
Confidence 88888887766544 689999999999999875 222 2111245555 5667733344789999999999832
Q ss_pred c------cCccHHHHHHHHHhhhcc
Q 035902 358 L------HGISIDAKNIANDINLAL 376 (381)
Q Consensus 358 ~------~~a~~~a~~~a~~i~~~l 376 (381)
. +.|..||.++|+++....
T Consensus 372 ~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 372 RGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHh
Confidence 1 289999999999987543
No 80
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.92 E-value=4.6e-25 Score=198.25 Aligned_cols=220 Identities=25% Similarity=0.316 Sum_probs=135.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCC-CCCeeeecC--CcccccCCCCCCCCC--------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWKKRA-YDRMKLHLA--KQFCELPHMPFPSRT-------- 70 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~-------- 70 (381)
.+|+++||.||++++.|..|.+.+ .++.++|+.+... |+..+ .+...+..+ ++.........+..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~--Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS--WHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC--cCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 489999999999999999999986 8999999887543 66543 223222211 221111111111000
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCC--CeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 71 ---------PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENA--KAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 71 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+++.++.+|+++.+++++..++++++|++|.+.... ..|.|.+.+ ..+....+.|+.||+|+|..
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQ 158 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----E
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCC
Confidence 135789999999999999998669999999999987643 258898865 33345789999999999988
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecCcceechhhHHHHH
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGG--KFIGKNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGPVHVLTREIVFAGM 215 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~~~~~p~~~~~~~~ 215 (381)
|.+|...........++|+.++.... ....++|+|||||.||+|++..|.+.+. +|+|+.|++ .+.|.++.++.
T Consensus 159 P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~s~f~- 236 (341)
T PF13434_consen 159 PRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDDSPFV- 236 (341)
T ss_dssp E---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB----CCH-
T ss_pred CCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCccccch-
Confidence 88886432111125689998876543 4578999999999999999999999875 899999999 77787766543
Q ss_pred HHHhhCcHHHHHHH
Q 035902 216 LLLKFLPCKLVDFI 229 (381)
Q Consensus 216 ~~~~~l~~~~~~~~ 229 (381)
.+++.++..+.+
T Consensus 237 --ne~f~P~~v~~f 248 (341)
T PF13434_consen 237 --NEIFSPEYVDYF 248 (341)
T ss_dssp --HGGGSHHHHHHH
T ss_pred --hhhcCchhhhhh
Confidence 334545554444
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=7.2e-22 Score=172.60 Aligned_cols=334 Identities=21% Similarity=0.271 Sum_probs=206.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCCC-CCeeee-----------cCCcccccCCC----
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWKKRAY-DRMKLH-----------LAKQFCELPHM---- 64 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~~~~~-~~~~~~-----------~~~~~~~~~~~---- 64 (381)
+.+|++.||-||+.++.|..|...+ .++..+|+.+.+- |+..+. +...+. .|-+.+.+-++
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3599999999999999999999985 6899999987553 554332 111111 11111111000
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE--EEEeecCCCceEEEEeCEEEEccCC
Q 035902 65 ----PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI--IVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
.+-..-..++++.|+.+|+++.+.++ -.++++.+|+.|...+.+.... +.+.++ ..++|+.||+++|.
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~-----~~y~ar~lVlg~G~ 155 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANG-----TVYRARNLVLGVGT 155 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCC-----cEEEeeeEEEccCC
Confidence 00011124678999999999999998 5789999999774433233333 344443 58999999999999
Q ss_pred CCCCCCC-CCCCCCCcceeecCCCCCC-CCCCCCe-EEEEcCCCCHHHHHHHHhhC----CCeeEEEEecCcceechhhH
Q 035902 139 NGLIPEV-PGLGSFEGEYMHSSKYENG-GKFIGKN-VLVVGCGNSGMEIAYDLSSC----GACTSIVVRGPVHVLTREIV 211 (381)
Q Consensus 139 ~~~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~~~~-v~viG~G~~~~e~a~~l~~~----g~~v~~i~r~~~~~~p~~~~ 211 (381)
.|.+|+. ..+. ..+++|+.++... .+...++ |.|||+|.||+|+...|... ..++.|++|+. .++|.+..
T Consensus 156 ~P~IP~~f~~l~--~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf~p~d~S 232 (436)
T COG3486 156 QPYIPPCFRSLI--GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GFLPMDYS 232 (436)
T ss_pred CcCCChHHhCcC--ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CCCccccc
Confidence 9999853 2222 2468999988743 3334444 99999999999998888754 23589999999 78888766
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhc--CCCeEEccC--cce
Q 035902 212 FAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR--KGEIQVFPS--ITS 287 (381)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~--v~~ 287 (381)
.++ .+++.+++.+++........-.-+++.++....+....... .+..-|.+.+. +.++.+... +.+
T Consensus 233 kf~---~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~------Iy~~lY~~~l~~~~~~v~l~~~~ev~~ 303 (436)
T COG3486 233 KFG---LEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEE------IYDLLYEQSLGGRKPDVRLLSLSEVQS 303 (436)
T ss_pred hhh---hhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHH------HHHHHHHHHhcCCCCCeeeccccceee
Confidence 555 55666666666644333222222222222211111110000 01111222222 235666666 777
Q ss_pred EeCCe---EEEc-----C--CcEeeccEEEEecCCCCCcchhccccCC--cccccCCCCCCCCCCCC--C--CCCcEEEE
Q 035902 288 INRNE---VEFE-----N--GKIEEFEAIIFATGYKSTVRNWLKRADK--DFFDEYGMPKRNCPNHW--K--GENGLYCA 351 (381)
Q Consensus 288 v~~~~---v~~~-----~--g~~~~~D~vi~a~G~~p~~~~~~~~~~~--~~~~~~g~~~~~~~~~~--~--~~~~ifa~ 351 (381)
++..+ +.+. + .++++.|.||+|||++...+.|+. ... -..+++|...++.+... + ....||+.
T Consensus 304 ~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~-~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvq 382 (436)
T COG3486 304 VEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLE-GLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQ 382 (436)
T ss_pred eecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhh-hHHHhhcccccCCeEecCceeeecCCCCcceEEEe
Confidence 76543 4331 2 358899999999999988877765 422 12577877777733222 1 22369999
Q ss_pred ecccc
Q 035902 352 GFSRT 356 (381)
Q Consensus 352 Gd~~~ 356 (381)
|-..+
T Consensus 383 n~e~h 387 (436)
T COG3486 383 NAELH 387 (436)
T ss_pred ccccc
Confidence 97644
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.85 E-value=5e-21 Score=183.45 Aligned_cols=305 Identities=17% Similarity=0.162 Sum_probs=181.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+||||++||-+|-+.|..|+++||.+..||..... . |.+.....+.+.-
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------i---------pnmkldk~vv~rr 1841 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------I---------PNMKLDKFVVQRR 1841 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------C---------CccchhHHHHHHH
Confidence 789999999999999999999999999999999999865432 1 2111222344444
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcce-----ee
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEY-----MH 157 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~-----~~ 157 (381)
-.++.+-|+++..|+++- +. +.++. -.-..|.+|+|+|+. |+..++||-+. +|-. .+
T Consensus 1842 v~ll~~egi~f~tn~eig--------k~--vs~d~------l~~~~daiv~a~gst~prdlpv~grd~-kgv~fame~l~ 1904 (2142)
T KOG0399|consen 1842 VDLLEQEGIRFVTNTEIG--------KH--VSLDE------LKKENDAIVLATGSTTPRDLPVPGRDL-KGVHFAMEFLE 1904 (2142)
T ss_pred HHHHHhhCceEEeecccc--------cc--ccHHH------HhhccCeEEEEeCCCCCcCCCCCCccc-cccHHHHHHHH
Confidence 556666799988887762 11 22111 234579999999999 88888888653 2210 11
Q ss_pred cC-------CC-CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 158 SS-------KY-ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 158 ~~-------~~-~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
.. .. -...+..+|+++|||||.+|-++...-.++|++ |.-+.--|. |.........+.+|.-...++.
T Consensus 1905 ~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~---pp~~ra~~npwpqwprvfrvdy 1981 (2142)
T KOG0399|consen 1905 KNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQ---PPPERAPDNPWPQWPRVFRVDY 1981 (2142)
T ss_pred HhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCC---CCcccCCCCCCccCceEEEeec
Confidence 10 00 011234689999999999999998888888864 544432221 1111000111111100000000
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEE----cCCcE
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEF----ENGKI 300 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~----~~g~~ 300 (381)
=..-..+.+-.|++.+.+...+. ..-.+++++=+.- |+.-..+ .+++ ++.+.
T Consensus 1982 gh~e~~~~~g~dpr~y~vltk~f--------------------~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~ 2041 (2142)
T KOG0399|consen 1982 GHAEAKEHYGSDPRTYSVLTKRF--------------------IGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEI 2041 (2142)
T ss_pred chHHHHHHhCCCcceeeeeeeee--------------------eccCCCceeeEEEEEEEEEecCCCceEEEEcCCccee
Confidence 00001111112333333221000 0001122222111 2222222 2333 23467
Q ss_pred eeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 301 EEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 301 ~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
++||.||+|.||--....... + .++ .|+++.+.+......++.+++||+|||+.+.. +|+++|+++|+++..
T Consensus 2042 ~eadlv~lamgf~gpe~~~~~-~-~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2042 IEADLVILAMGFVGPEKSVIE-Q-LNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred eecceeeeeccccCcchhhhh-h-cCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHH
Confidence 899999999999866544444 3 555 77888888875566688999999999999876 999999999999976
No 83
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.85 E-value=3.4e-20 Score=174.13 Aligned_cols=275 Identities=19% Similarity=0.176 Sum_probs=183.1
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCC-CCCHHHHHHH
Q 035902 6 VVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPT-FVPRISFINY 82 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (381)
++|||+|++|+.+|..+++. +.+++++..+....... .+.+..... ......+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR---------------------CPLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC---------------------CccchHHhcccCCHHHhccc
Confidence 58999999999999998886 45888887775332100 000000000 1111111111
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.. ...+.++.++.+++|.+++... .. +.+.++ .+.||++++|||+.|..++ +.. ...........
T Consensus 60 ~~-~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g------~~~yd~LvlatGa~~~~~~--~~~--~~~~~~~~~~~ 124 (415)
T COG0446 60 PR-FNRATGIDVRTGTEVTSIDPEN--KV--VLLDDG------EIEYDYLVLATGARPRPPP--ISD--WEGVVTLRLRE 124 (415)
T ss_pred ch-hHHhhCCEEeeCCEEEEecCCC--CE--EEECCC------cccccEEEEcCCCcccCCC--ccc--cCceEEECCHH
Confidence 11 1245578889999999998765 44 666664 7899999999999988775 111 11122222211
Q ss_pred CCCC-----CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhh-HHHHHHHHhhCcHHHHHHHHHHHhhh
Q 035902 163 NGGK-----FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREI-VFAGMLLLKFLPCKLVDFIVVMLSKM 236 (381)
Q Consensus 163 ~~~~-----~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (381)
.... ...++++|+|+|..|+++|..+.+.|.+|+++...+ ++++... .++...+
T Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~~~~~~~------------------- 184 (415)
T COG0446 125 DAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDPEVAEEL------------------- 184 (415)
T ss_pred HHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhHHHHHHH-------------------
Confidence 1111 125899999999999999999999999999999998 6655543 3222222
Q ss_pred hhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe-------EEEcCCcEeeccEEE
Q 035902 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE-------VEFENGKIEEFEAII 307 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~-------v~~~~g~~~~~D~vi 307 (381)
.+.++..+|+++.+ +.+++... +...++..+++|.++
T Consensus 185 ----------------------------------~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~ 230 (415)
T COG0446 185 ----------------------------------AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVI 230 (415)
T ss_pred ----------------------------------HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEE
Confidence 34446666777666 77777642 567788899999999
Q ss_pred EecCCCCCcchhccccCC--cccccCCCCCCCCCCCCCC-CCcEEEEeccccccc-------------CccHHHHHHHHH
Q 035902 308 FATGYKSTVRNWLKRADK--DFFDEYGMPKRNCPNHWKG-ENGLYCAGFSRTGLH-------------GISIDAKNIAND 371 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~ifa~Gd~~~~~~-------------~a~~~a~~~a~~ 371 (381)
+++|.+|+.. +.. . . +.....|++.++ ..+.++ .+++|++||+..... .+..++..++.+
T Consensus 231 ~~~g~~p~~~-l~~-~-~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~ 306 (415)
T COG0446 231 IGPGERPNVV-LAN-D-ALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAEN 306 (415)
T ss_pred EeecccccHH-HHh-h-CccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHH
Confidence 9999999953 333 2 3 357778899999 456665 899999999754321 667777777777
Q ss_pred hhh
Q 035902 372 INL 374 (381)
Q Consensus 372 i~~ 374 (381)
+..
T Consensus 307 ~~~ 309 (415)
T COG0446 307 IAG 309 (415)
T ss_pred hcc
Confidence 764
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=174.06 Aligned_cols=294 Identities=19% Similarity=0.213 Sum_probs=183.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||+++|..|.+.|+.|+++|+.+..||.... ..|.+....++.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y------------------------GIP~~kl~k~i~d~~ 179 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY------------------------GIPDFKLPKDILDRR 179 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe------------------------cCchhhccchHHHHH
Confidence 78999999999999999999999999999999988875432 123444455778888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+++++.|+++++++++-. . ++.+. -.-.||.|++|+|+. |+..+++|.+. ++ +....++.
T Consensus 180 i~~l~~~Gv~~~~~~~vG~--------~--it~~~------L~~e~Dav~l~~G~~~~~~l~i~g~d~-~g-v~~A~dfL 241 (457)
T COG0493 180 LELLERSGVEFKLNVRVGR--------D--ITLEE------LLKEYDAVFLATGAGKPRPLDIPGEDA-KG-VAFALDFL 241 (457)
T ss_pred HHHHHHcCeEEEEcceECC--------c--CCHHH------HHHhhCEEEEeccccCCCCCCCCCcCC-Cc-chHHHHHH
Confidence 8888888999988887731 1 23222 123459999999999 88888888752 22 11111111
Q ss_pred --------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcc--eechhhHHHHHHHHhhCcHHH
Q 035902 163 --------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVH--VLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 163 --------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~--~~p~~~~~~~~~~~~~l~~~~ 225 (381)
......+++++|||+|.+++|++......|. +|+.+.|.... ..|....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~-------------- 307 (457)
T COG0493 242 TRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTW-------------- 307 (457)
T ss_pred HHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCccccc--------------
Confidence 1112235999999999999999999999997 58888644311 0000000
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhh--cCCCeEEccC--cceEeC-------CeEE
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKI--RKGEIQVFPS--ITSINR-------NEVE 294 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--v~~v~~-------~~v~ 294 (381)
... ..+......++.+.. .......+ .+++|+-.+. +..... ..+.
T Consensus 308 -~~~------~~~~~a~eeg~~~~~----------------~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~ 364 (457)
T COG0493 308 -AAQ------LEVRSAGEEGVERLP----------------FVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVG 364 (457)
T ss_pred -chh------hhhhhhhhcCCcccc----------------cCCceeEeecCCCcEeeeecccccccCcccccccccCcc
Confidence 000 000011111111000 00001111 1222221111 111100 0111
Q ss_pred EcC-CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHH
Q 035902 295 FEN-GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIA 369 (381)
Q Consensus 295 ~~~-g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a 369 (381)
... ...+++|.++.|+|+.++...+.. ...++ .+..|.+.++.....|+.|++|+.||++.+.. .|+.+|+.+|
T Consensus 365 v~gs~~~~~aD~v~~aig~~~~~~~~~~-~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aa 443 (457)
T COG0493 365 VIGTEKTDAADTVILAIGFEGDATDGLL-LEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAA 443 (457)
T ss_pred ccCceEEehHHHHHHHhccCCCcccccc-cccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHH
Confidence 122 247899999999999999765433 22244 77889999983333799999999999998654 9999999999
Q ss_pred HHhh-hccc
Q 035902 370 NDIN-LALT 377 (381)
Q Consensus 370 ~~i~-~~l~ 377 (381)
+.|. ..+.
T Consensus 444 k~i~~~~l~ 452 (457)
T COG0493 444 KAIDKELLL 452 (457)
T ss_pred HhhhHHHHh
Confidence 9999 4443
No 85
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.82 E-value=7.3e-20 Score=159.47 Aligned_cols=303 Identities=17% Similarity=0.203 Sum_probs=187.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC--------CcCCCCCCCeeeecCCcccccCC-CCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS--------LWKKRAYDRMKLHLAKQFCELPH-MPFPSRTP 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 71 (381)
+...+|||+|.+..+++..+... +.++.+|..++.++- .|..........-....|.+... ..|..+ .
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd-~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD-G 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC-c
Confidence 35689999999988888777655 568999988776552 23222111100000000100000 000000 1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC-CC-CC
Q 035902 72 TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV-PG-LG 149 (381)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~-~g-~~ 149 (381)
.|.+.+++-+ +..-|+.+..+.+|..++..+ .. |++++| .+|.||.++||||.+|+..+. .- -+
T Consensus 257 FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d--~~--V~LnDG-----~~I~YdkcLIATG~~Pk~l~~~~~A~~ 322 (659)
T KOG1346|consen 257 FFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEED--KK--VILNDG-----TTIGYDKCLIATGVRPKKLQVFEEASE 322 (659)
T ss_pred ceeChhHCcc-----cccCceEEEeccceEEeeccc--Ce--EEecCC-----cEeehhheeeecCcCcccchhhhhcCH
Confidence 2334444333 233477788888999888765 55 899998 899999999999999875543 11 11
Q ss_pred CCCcce--eecCCCCCCC---CCCCCeEEEEcCCCCHHHHHHHHhhC----CCeeEEEEecCcceechhhHHHHHHHHhh
Q 035902 150 SFEGEY--MHSSKYENGG---KFIGKNVLVVGCGNSGMEIAYDLSSC----GACTSIVVRGPVHVLTREIVFAGMLLLKF 220 (381)
Q Consensus 150 ~~~~~~--~~~~~~~~~~---~~~~~~v~viG~G~~~~e~a~~l~~~----g~~v~~i~r~~~~~~p~~~~~~~~~~~~~ 220 (381)
+.+.++ ++....+... ....++|.|||+|..|.|+|..|.+. |.+|+=+.... ..+...+.++
T Consensus 323 evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek--------~nm~kiLPey 394 (659)
T KOG1346|consen 323 EVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK--------YNMEKILPEY 394 (659)
T ss_pred HhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc--------CChhhhhHHH
Confidence 122222 2222211111 12458899999999999999998864 55665444333 1222222222
Q ss_pred CcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEE
Q 035902 221 LPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVE 294 (381)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~ 294 (381)
+..| ..+.+++++|.++++ |.++... .+.
T Consensus 395 ls~w---------------------------------------------t~ekir~~GV~V~pna~v~sv~~~~~nl~lk 429 (659)
T KOG1346|consen 395 LSQW---------------------------------------------TIEKIRKGGVDVRPNAKVESVRKCCKNLVLK 429 (659)
T ss_pred HHHH---------------------------------------------HHHHHHhcCceeccchhhhhhhhhccceEEE
Confidence 2111 256778899999988 6665432 466
Q ss_pred EcCCcEeeccEEEEecCCCCCcchhccccCCcc-ccc-CCCCCCCCCCCCCCCCcEEEEeccccccc------------C
Q 035902 295 FENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDE-YGMPKRNCPNHWKGENGLYCAGFSRTGLH------------G 360 (381)
Q Consensus 295 ~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~------------~ 360 (381)
+.||.++..|.|++|+|-.||.+..-. .++ +|+ -|-+.+| ...+...|||++||++.... .
T Consensus 430 L~dG~~l~tD~vVvavG~ePN~ela~~---sgLeiD~~lGGfrvn--aeL~ar~NvwvAGdaacF~D~~LGrRRVehhdh 504 (659)
T KOG1346|consen 430 LSDGSELRTDLVVVAVGEEPNSELAEA---SGLEIDEKLGGFRVN--AELKARENVWVAGDAACFEDGVLGRRRVEHHDH 504 (659)
T ss_pred ecCCCeeeeeeEEEEecCCCchhhccc---ccceeecccCcEEee--heeecccceeeecchhhhhcccccceecccccc
Confidence 789999999999999999999963322 455 443 4667777 44455679999999865321 8
Q ss_pred ccHHHHHHHHHhhhcccc
Q 035902 361 ISIDAKNIANDINLALTD 378 (381)
Q Consensus 361 a~~~a~~~a~~i~~~l~~ 378 (381)
|..+|+++++|+.+.-+-
T Consensus 505 avvSGRLAGENMtgAakp 522 (659)
T KOG1346|consen 505 AVVSGRLAGENMTGAAKP 522 (659)
T ss_pred ceeeceecccccccccCC
Confidence 888999999998876543
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.82 E-value=4.4e-18 Score=156.18 Aligned_cols=161 Identities=18% Similarity=0.127 Sum_probs=100.0
Q ss_pred cccEEEECCCHHHHHHHHHHH-hCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLN-NLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~-~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.++|+||||||||++||..|+ +.|.+|+|||+.+.++|.++.... +..+.-..+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~~ 95 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTYK 95 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHHH
Confidence 368999999999999999875 569999999999999987654311 22333346666
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC----------CCCC-
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP----------GLGS- 150 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~----------g~~~- 150 (381)
.+...+...++.+..+.++. .. ++.+. -.-.||.||+|+|+.+.-++++ |.+.
T Consensus 96 ~f~~~~~~~~v~f~gnv~VG--------~D--vt~ee------L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~ 159 (506)
T PTZ00188 96 TFDPVFLSPNYRFFGNVHVG--------VD--LKMEE------LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNP 159 (506)
T ss_pred HHHHHHhhCCeEEEeeeEec--------Cc--cCHHH------HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccc
Confidence 66665555555544332221 00 22222 1237999999999995433311 2210
Q ss_pred --CCc------ceeecCCCCC------CC----CC-CCCeEEEEcCCCCHHHHHHHHhh--------------------C
Q 035902 151 --FEG------EYMHSSKYEN------GG----KF-IGKNVLVVGCGNSGMEIAYDLSS--------------------C 191 (381)
Q Consensus 151 --~~~------~~~~~~~~~~------~~----~~-~~~~v~viG~G~~~~e~a~~l~~--------------------~ 191 (381)
..| .+.+.....+ .. .+ ..++++|||.|+.|+++|+.|.. .
T Consensus 160 ~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s 239 (506)
T PTZ00188 160 RKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRH 239 (506)
T ss_pred cccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhC
Confidence 111 1112111111 00 01 45789999999999999998543 2
Q ss_pred C-CeeEEEEecC
Q 035902 192 G-ACTSIVVRGP 202 (381)
Q Consensus 192 g-~~v~~i~r~~ 202 (381)
. .+|+++.|+.
T Consensus 240 ~v~~V~ivgRRG 251 (506)
T PTZ00188 240 NIKHIYIVGRRG 251 (506)
T ss_pred CCcEEEEEEecC
Confidence 3 3699999998
No 87
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.80 E-value=1.8e-18 Score=149.36 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=109.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
..+|+|||+||||+++|..|.++ +.+|+|+|+.+.+.|..+... .|.++.-..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvKnvi 76 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVKNVI 76 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchhhHH
Confidence 36899999999999999999985 679999999998877654331 13344444566
Q ss_pred HHHHHHHHHhCCccccccEE-EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeec
Q 035902 81 NYVDNYVSQMGINPRYHRSV-ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~ 158 (381)
..+.+.+++....+..|.+| .+ +.+.. -+=.||.||+|.|+. ++..+|||.+. .+ ++..
T Consensus 77 ntFt~~aE~~rfsf~gNv~vG~d-----------vsl~e------L~~~ydavvLaYGa~~dR~L~IPGe~l-~~-V~Sa 137 (468)
T KOG1800|consen 77 NTFTKTAEHERFSFFGNVKVGRD-----------VSLKE------LTDNYDAVVLAYGADGDRRLDIPGEEL-SG-VISA 137 (468)
T ss_pred HHHHHHhhccceEEEecceeccc-----------ccHHH------HhhcccEEEEEecCCCCcccCCCCccc-cc-ceeh
Confidence 66666777655555544444 11 22221 234699999999999 88889999762 22 2222
Q ss_pred CCC----C-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhC----------------------CCeeEEEEecC
Q 035902 159 SKY----E-------NGGKFIGKNVLVVGCGNSGMEIAYDLSSC----------------------GACTSIVVRGP 202 (381)
Q Consensus 159 ~~~----~-------~~~~~~~~~v~viG~G~~~~e~a~~l~~~----------------------g~~v~~i~r~~ 202 (381)
..+ . ...++....++|||.|..|+++|+.|... -++|+++.|+.
T Consensus 138 refv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRg 214 (468)
T KOG1800|consen 138 REFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRG 214 (468)
T ss_pred hhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccC
Confidence 211 1 12345688999999999999999888741 13689999998
No 88
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.80 E-value=1e-18 Score=171.03 Aligned_cols=323 Identities=13% Similarity=0.092 Sum_probs=168.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC--C-----CCCCCeeee-cCCcccccCCCCCCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK--K-----RAYDRMKLH-LAKQFCELPHMPFPSRTPTFVP 75 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~--~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (381)
++|+||||||||++||+.|+++|++|+++|+....|+... . ..+..+... .+...-+...+ ..+.-..
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~y----GIp~R~~ 459 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEY----GITVRWD 459 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCccccc----Cccccch
Confidence 7899999999999999999999999999998764443211 0 000000000 00000000001 1110011
Q ss_pred HHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCc
Q 035902 76 RISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEG 153 (381)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~ 153 (381)
....+.++...+. .++.++.+..+ . .. ++.++- ....||.|++|||+. |..+++||.+. .+
T Consensus 460 -k~~l~~i~~il~~g~~v~~~~gv~l---G-----~d--it~edl-----~~~gyDAV~IATGA~kpr~L~IPGeda-~G 522 (1028)
T PRK06567 460 -KNNLDILRLILERNNNFKYYDGVAL---D-----FN--ITKEQA-----FDLGFDHIAFCIGAGQPKVLDIENFEA-KG 522 (1028)
T ss_pred -HHHHHHHHHHHhcCCceEEECCeEE---C-----cc--CCHHHH-----hhcCCCEEEEeCCCCCCCCCCCCCccC-CC
Confidence 1222323333322 12333334332 0 11 222211 246699999999995 99999999764 22
Q ss_pred ceeecCCCCCCC-------------CCCCCeEEEEcCCCCHHHHHHHHhh---CCCeeEEEEecCcceechhhHHHHHHH
Q 035902 154 EYMHSSKYENGG-------------KFIGKNVLVVGCGNSGMEIAYDLSS---CGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 154 ~~~~~~~~~~~~-------------~~~~~~v~viG~G~~~~e~a~~l~~---~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
++...++.... ...+++++|||||.+|+|+|..... .+.++++....+ ..+|..+.+++..+
T Consensus 523 -V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~~~~~~d~eia~~f 600 (1028)
T PRK06567 523 -VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-KDLTEEDKEIAEEF 600 (1028)
T ss_pred -eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-hhcccccHHHHHHH
Confidence 33333321110 1136899999999999999986654 344555555555 56677777777766
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccC-CCCCCCCCcccccccCCCccc--cchhhhhhcCCCeEEccC--cceEeCC-
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYG-LERPKKGPFYFKAITGQTPTI--DVGAMDKIRKGEIQVFPS--ITSINRN- 291 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~--v~~v~~~- 291 (381)
...+.............+ -.++.+ +. ..........|.. +.+..+...+.+|.++.. ..++..+
T Consensus 601 ~~h~r~~g~~~~~~~v~~----l~~~~G~Vt------IvYRr~~~empA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~ 670 (1028)
T PRK06567 601 IAHAKLFKEAKNNEELRK----VFNKLGGAT------VYYRGRLQDSPAYKLNHEELIYALALGVDFKENMQPLRINVDK 670 (1028)
T ss_pred HHHHHhhcchhccchhhh----hhccCCceE------EEecCChhhCCCCCCCHHHHHHHHHcCcEEEecCCcEEEEecC
Confidence 665533220000000000 000000 00 0000000011221 122344445667777766 4444211
Q ss_pred -----eEEEc------------------------------CCcEeeccEEEEecCCCCCcchhccccCCcccccCCCCCC
Q 035902 292 -----EVEFE------------------------------NGKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKR 336 (381)
Q Consensus 292 -----~v~~~------------------------------~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~ 336 (381)
++.+. ...+++||.||+|+|..||+..+ . .
T Consensus 671 ~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~-~-~------------- 735 (1028)
T PRK06567 671 YGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD-E-D------------- 735 (1028)
T ss_pred CCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc-c-c-------------
Confidence 11111 11468999999999999998431 1 0
Q ss_pred CCCCCCCCCCcEEEEecccccccCccHHHHHHHHHhhhccccCC
Q 035902 337 NCPNHWKGENGLYCAGFSRTGLHGISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 337 ~~~~~~~~~~~ifa~Gd~~~~~~~a~~~a~~~a~~i~~~l~~~~ 380 (381)
+ ....++.+++|+- ..-.|+.+|+..+.+|.+.|..+.
T Consensus 736 ~-~s~~~d~~~~f~G-----tvv~A~as~k~~~~~i~~~l~~~~ 773 (1028)
T PRK06567 736 K-YSYFGDCNPKYSG-----SVVKALASSKEGYDAINKKLINNN 773 (1028)
T ss_pred c-cccccCCCCcccc-----HHHHHHHHHHhHHHHHHHHHhhCC
Confidence 0 1222344567764 233889999999999998886653
No 89
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.73 E-value=9.9e-17 Score=142.83 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=74.3
Q ss_pred hhhhhhc-CCCeEEccC-cceEeC---Ce--EEEcC---C--cEeeccEEEEecCCCCCcchh-ccccCCcc-cccCCCC
Q 035902 269 GAMDKIR-KGEIQVFPS-ITSINR---NE--VEFEN---G--KIEEFEAIIFATGYKSTVRNW-LKRADKDF-FDEYGMP 334 (381)
Q Consensus 269 ~~~~~~~-~~~v~~~~~-v~~v~~---~~--v~~~~---g--~~~~~D~vi~a~G~~p~~~~~-~~~~~~~~-~~~~g~~ 334 (381)
++....+ +.+|+++.+ +.++.. +. |..+| | .++++|.|++++|+.|....- +. ...|+ .+++||+
T Consensus 419 efY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia-~iLgL~~~~~gF~ 497 (622)
T COG1148 419 EFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIA-KILGLSQDEDGFL 497 (622)
T ss_pred HHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHH-HhcCcccCCCCcc
Confidence 3333334 678888888 555543 23 33333 2 378999999999999965432 22 33566 7889999
Q ss_pred CCCCCCCC---CCCCcEEEEeccccccc--CccHHHHHHHHHhhhccc
Q 035902 335 KRNCPNHW---KGENGLYCAGFSRTGLH--GISIDAKNIANDINLALT 377 (381)
Q Consensus 335 ~~~~~~~~---~~~~~ifa~Gd~~~~~~--~a~~~a~~~a~~i~~~l~ 377 (381)
.-.+|... ++.+|||.+|-+.+... .+..||..+|......+.
T Consensus 498 k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 498 KEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred ccCCCCcccccccCCcEEEeecccCCccHHHHHHHhHHHHHHHHHHhh
Confidence 88877655 57899999998887654 677777777766665554
No 90
>PRK09897 hypothetical protein; Provisional
Probab=99.69 E-value=6.5e-16 Score=146.13 Aligned_cols=189 Identities=17% Similarity=0.175 Sum_probs=113.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCC--CcCCCCC-CCeeee--------cCCcccccCCCC-----
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSAS--LWKKRAY-DRMKLH--------LAKQFCELPHMP----- 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~--~~~~~~~-~~~~~~--------~~~~~~~~~~~~----- 65 (381)
++|+|||||++|+++|.+|.+.+ .+|+|||++..+|. .|..... +.+..+ .+..+..|....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 68999999999999999998864 58999999887774 2443111 111111 011122221100
Q ss_pred --CC-----CCCCCCCCHHHHHHHHHHHHHH-------hC--CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 66 --FP-----SRTPTFVPRISFINYVDNYVSQ-------MG--INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 66 --~~-----~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
+. ..-..++++..+.+|+++.++. .+ +.++.+++|+++...+ +.|.+++.++ ...+.+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~g----g~~i~a 155 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQD----LPSETF 155 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCC----CeEEEc
Confidence 00 0112466666665555543332 23 4566788999998765 5677776542 157899
Q ss_pred CEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCC-----------------
Q 035902 130 RYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG----------------- 192 (381)
Q Consensus 130 d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g----------------- 192 (381)
|+||+|+|..+..+ .++...+ +-..+.........+.+|+|+|.|.+++|++..|...|
T Consensus 156 D~VVLAtGh~~p~~-~~~~~~y---i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~ 231 (534)
T PRK09897 156 DLAVIATGHVWPDE-EEATRTY---FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDN 231 (534)
T ss_pred CEEEECCCCCCCCC-Chhhccc---cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecC
Confidence 99999999863211 1111111 11111111111224689999999999999998887552
Q ss_pred ----CeeEEEEecC
Q 035902 193 ----ACTSIVVRGP 202 (381)
Q Consensus 193 ----~~v~~i~r~~ 202 (381)
.+|++++|+.
T Consensus 232 sg~~~~I~a~SRrG 245 (534)
T PRK09897 232 ASEKLNITLMSRTG 245 (534)
T ss_pred CCCCceEEEEeCCC
Confidence 3688999887
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.69 E-value=2.8e-18 Score=144.60 Aligned_cols=121 Identities=26% Similarity=0.327 Sum_probs=75.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH---
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN--- 81 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 81 (381)
||+|||||+||++||..|++.+.+++|+|+.+..+.. .. ..+... ..........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~--~~--------------~~~~~~---~~~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN--SG--------------CIPSPL---LVEIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH--HS--------------HHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc--cc--------------cccccc---cccccccccccccccc
Confidence 6999999999999999999999999999887522110 00 000000 0000000001111
Q ss_pred -HHHHHHHHhCCccccccEEEEEEEeCCCCeE-----EEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 82 -YVDNYVSQMGINPRYHRSVESASYDENAKAW-----IIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-----~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.+.+.+...++++++++++.+++... +.+ .+... ...+..++.||+||+|||+.|..|.+||.
T Consensus 62 ~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~--~~~~~~~~~~d~lviAtG~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVV--ETGDGREIKYDYLVIATGSRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEE--ETTTEEEEEEEEEEEESTEEEEEESSTTT
T ss_pred cccccccccceEEEeeccccccccccc--cccccCcccceee--ccCCceEecCCeeeecCccccceeecCCC
Confidence 22223345688887889999998765 321 12221 11234789999999999999988888886
No 92
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.68 E-value=1.4e-14 Score=130.77 Aligned_cols=359 Identities=17% Similarity=0.241 Sum_probs=191.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC---CCeEEEecCCCCCC-CcCCCCC---------CCeeeec---CCcccccCCCC--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS---VPNIILEREDCSAS-LWKKRAY---------DRMKLHL---AKQFCELPHMP-- 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g---~~v~lie~~~~~g~-~~~~~~~---------~~~~~~~---~~~~~~~~~~~-- 65 (381)
++|+|||+|++|+++|.+|.+.- ..+.|||+...+|. ..+.... ..|.... +.+|..|-...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 78999999999999999999872 24999999988875 2222111 1222221 12222221111
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHh----CCc-c-ccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 66 -------FPSRTPTFVPRISFINYVDNYVSQM----GIN-P-RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 66 -------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
...+-+.|+++..+.+|+.+++..+ ... + ....+++++..+.+.+.|.+...++ ....||-+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-----~~~~ad~~ 156 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-----PSEIADII 156 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-----CeeeeeEE
Confidence 1223345788888888887765433 211 2 3445667777765457777888887 67899999
Q ss_pred EEccCCCCCCCCCCCCCCCCcce-eecC----CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecCcce
Q 035902 133 VVATGENGLIPEVPGLGSFEGEY-MHSS----KYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGPVHV 205 (381)
Q Consensus 133 IlAtG~~~~~~~~~g~~~~~~~~-~~~~----~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~~~~ 205 (381)
|+|||..+..+..-. ..+.+.. +... +..+..+ ...+++|+|+|.+.++....+..+|. +||.++|+. +
T Consensus 157 Vlatgh~~~~~~~~~-~~~~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG--l 232 (474)
T COG4529 157 VLATGHSAPPADPAA-RDLKGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG--L 232 (474)
T ss_pred EEeccCCCCCcchhh-hccCCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc--c
Confidence 999998844333211 1111111 1111 2222223 46679999999999999999999885 599999987 3
Q ss_pred echhhHH-------------HH------HHHHhhC------cHHHHHHH---HHHH--hhhhhcCccccCCCCCCCCCcc
Q 035902 206 LTREIVF-------------AG------MLLLKFL------PCKLVDFI---VVML--SKMKFGNLFKYGLERPKKGPFY 255 (381)
Q Consensus 206 ~p~~~~~-------------~~------~~~~~~l------~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~ 255 (381)
.|..+.+ .. ..+...+ ..+|.+.+ .... ....+...++..+.+... +++
T Consensus 233 ~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~-~~~ 311 (474)
T COG4529 233 VPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLR-PIW 311 (474)
T ss_pred ccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcc-cHH
Confidence 3332220 00 0000000 00011000 0000 000000011111111111 111
Q ss_pred cccccCCCccccchhhhhhcCCCeEEccC-cceEeCC----eEEEc----C-CcEeeccEEEEecCCCCCcch----hc-
Q 035902 256 FKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN----EVEFE----N-GKIEEFEAIIFATGYKSTVRN----WL- 320 (381)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~----~v~~~----~-g~~~~~D~vi~a~G~~p~~~~----~~- 320 (381)
.--.+-..|.+.......+.++.++++.+ +..++.. .+.+. + .+.+++|.||.|+|..+.... ++
T Consensus 312 dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~ 391 (474)
T COG4529 312 DVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLR 391 (474)
T ss_pred HHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHH
Confidence 11111233455556667777888888888 5555432 24332 1 257899999999998877532 11
Q ss_pred cccCCccc--cc--CCCCCCCCCC-----CCCCCCcEEEEeccccccc-------CccHHHHHHHHHhh
Q 035902 321 KRADKDFF--DE--YGMPKRNCPN-----HWKGENGLYCAGFSRTGLH-------GISIDAKNIANDIN 373 (381)
Q Consensus 321 ~~~~~~~~--~~--~g~~~~~~~~-----~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i~ 373 (381)
.+...|+. |. .| +.|+... .....+++|++|....+.. ....|+..+|..|.
T Consensus 392 sl~~~Gl~rpd~~~lG-l~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 392 SLGENGLARPDPPGLG-LDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred HHHhCCccccCCCCCc-eeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 11113331 11 12 2333111 1234679999999877653 44456666666655
No 93
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.67 E-value=3.5e-15 Score=122.82 Aligned_cols=291 Identities=16% Similarity=0.156 Sum_probs=150.4
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+.+|||||+||.+||.+|+.. ..+++|+..++.+-+ ...-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks--------------------------------vtn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS--------------------------------VTNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH--------------------------------HhhHHHHHHH
Confidence 368999999999999999987 348888887753211 0011122232
Q ss_pred HHHHH------HHhCCcc--ccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcc
Q 035902 83 VDNYV------SQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGE 154 (381)
Q Consensus 83 ~~~~~------~~~~~~~--~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~ 154 (381)
++++- ..++..+ ..+. |..++. ....+++++| .++.|++|++|+|+.|..-. +|.+ ..
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~~-v~~~~s----~ehci~t~~g-----~~~ky~kKOG~tg~kPklq~-E~~n---~~ 114 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLND-VVTWDS----SEHCIHTQNG-----EKLKYFKLCLCTGYKPKLQV-EGIN---PK 114 (334)
T ss_pred HHhcCccccchhhhcccHHHHHHh-hhhhcc----ccceEEecCC-----ceeeEEEEEEecCCCcceee-cCCC---ce
Confidence 22210 0011111 0111 222222 2234888887 78999999999999987542 3322 23
Q ss_pred eeecCCCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH-HHHHHHHhhCcHH----
Q 035902 155 YMHSSKYENGGK-----FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV-FAGMLLLKFLPCK---- 224 (381)
Q Consensus 155 ~~~~~~~~~~~~-----~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~-~~~~~~~~~l~~~---- 224 (381)
++...+...... ...|.|+|+|.|-+++|++.++.-. +|+|....+ ++...+.. ....++...+.-.
T Consensus 115 Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfdpGaaef~~i~l~a~~s~~ 191 (334)
T KOG2755|consen 115 IVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFDPGAAEFYDINLRADRSTR 191 (334)
T ss_pred EEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccCccHHHHhHhhhhcccccc
Confidence 454434332222 3689999999999999999998765 788988877 54332222 2111111111000
Q ss_pred -HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceE-eCC---eEEEc--
Q 035902 225 -LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSI-NRN---EVEFE-- 296 (381)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v-~~~---~v~~~-- 296 (381)
...+-+++. +.+- ..... ..-+..+|.+.....-.-...+ .+..+.+... +..+ ++. .+.-.
T Consensus 192 ~iaiKh~q~i-ea~p-k~~~n-~vg~algpDw~s~~dl~g~~es-------eer~l~~l~~~~~~~~d~~d~~sv~~~~~ 261 (334)
T KOG2755|consen 192 IIAIKHFQYI-EAFP-KCEEN-NVGPALGPDWHSQIDLQGISES-------ENRSLTYLRNCVITSTDTSDNLSVHYMDK 261 (334)
T ss_pred hhhhhhhhhh-hhcC-ccccc-CcccccCcchhhhcccccchhh-------hhhhhHHhhhheeeeccchhhcccccccc
Confidence 000000000 0000 00000 0012223332221111000000 0111111111 1111 111 12111
Q ss_pred -CC--cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccc
Q 035902 297 -NG--KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357 (381)
Q Consensus 297 -~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~ 357 (381)
.+ ..+.||.++.|+|..||.+ +.. ...-.+.++|-+.++ ..+.|+.|++|++||+-..
T Consensus 262 ek~~~~qlt~d~ivSatgvtpn~e-~~~-~~~lq~~edggikvd-d~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 262 EKMADNQLTCDFIVSATGVTPNSE-WAM-NKMLQITEDGGIKVD-DAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred cccccceeeeeEEEeccccCcCce-EEe-cChhhhccccCeeeh-hhccccccceeeecceecc
Confidence 11 3577999999999999998 544 323336677778888 4778999999999997553
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.60 E-value=8.7e-15 Score=128.91 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=94.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCC-----------CCCeeeecC---Cc----ccccC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRA-----------YDRMKLHLA---KQ----FCELP 62 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~-----------~~~~~~~~~---~~----~~~~~ 62 (381)
|+.+||+||||||||++||..+.+.|.+|+|||+.+.+|....-.- +..+....+ .. +..|.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 7789999999999999999999999999999999997775432210 111111111 00 00000
Q ss_pred C-----------CCCCC-----CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 63 H-----------MPFPS-----RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 63 ~-----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
. ..+.. -+|.--+...+++.+...+++.|++++++++|.++..++ ..|.+.+.++ .+
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g-----~~ 153 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSG-----ET 153 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCC-----CE
Confidence 0 00000 112223467889999999999999999999999999876 6788999987 58
Q ss_pred EEeCEEEEccCCC
Q 035902 127 YVARYLVVATGEN 139 (381)
Q Consensus 127 ~~~d~vIlAtG~~ 139 (381)
++||.+|+|||..
T Consensus 154 i~~d~lilAtGG~ 166 (408)
T COG2081 154 VKCDSLILATGGK 166 (408)
T ss_pred EEccEEEEecCCc
Confidence 9999999999943
No 95
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.60 E-value=5.3e-15 Score=125.24 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=71.3
Q ss_pred chhhhhhcCCCeEEccC--cceEeCC--eEEEc---C-Cc--EeeccEEEEecCCCCCcchhccccCCcccccCCCCCCC
Q 035902 268 VGAMDKIRKGEIQVFPS--ITSINRN--EVEFE---N-GK--IEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRN 337 (381)
Q Consensus 268 ~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~---~-g~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~ 337 (381)
+.+.+.+++.+|++... +.++..+ ..+|+ + |. +++++.+=+.+-.++. .++. . ..+.|..||+.+|
T Consensus 240 ~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p--e~l~-~-s~~adktGfvdVD 315 (446)
T KOG3851|consen 240 DALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP--EVLA-N-SDLADKTGFVDVD 315 (446)
T ss_pred HHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh--hhhh-c-CcccCcccceecC
Confidence 34456666777776654 4444332 23332 2 53 5667776666555543 4454 4 6689999999999
Q ss_pred CCCCC-CCCCcEEEEeccccccc-----CccHHHHHHHHHhhhcccc
Q 035902 338 CPNHW-KGENGLYCAGFSRTGLH-----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 338 ~~~~~-~~~~~ifa~Gd~~~~~~-----~a~~~a~~~a~~i~~~l~~ 378 (381)
....+ +..||+|++|||.+.++ .+..|...+-+|+...++.
T Consensus 316 ~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g 362 (446)
T KOG3851|consen 316 QSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQG 362 (446)
T ss_pred hhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcC
Confidence 54444 57899999999999987 4457788888888776654
No 96
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.50 E-value=4e-13 Score=123.92 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++||+|||+|++|+++|..+++.|.+|+|||+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 15999999999999999999999999999999864
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.44 E-value=4.5e-13 Score=123.24 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=74.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC------------CCCCeeee---cCCcc----------
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR------------AYDRMKLH---LAKQF---------- 58 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~------------~~~~~~~~---~~~~~---------- 58 (381)
|||+|||||+||++||+.+++.|.+|+|+|+++.+|...... ....+... .+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999998776422110 00111110 00000
Q ss_pred -----cccCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE
Q 035902 59 -----CELPHMPFPS-----RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128 (381)
Q Consensus 59 -----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 128 (381)
+.-...+... -+|.-.+...+.+.+.+.+++.+++++++++|.++..++ ++.|.|.++++ ..+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~-----~~~~ 154 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNG-----GEYE 154 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTT-----EEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCc-----cccc
Confidence 0000011000 012222466788899999999999999999999998876 35588888443 7899
Q ss_pred eCEEEEccCCC
Q 035902 129 ARYLVVATGEN 139 (381)
Q Consensus 129 ~d~vIlAtG~~ 139 (381)
+|.||+|||..
T Consensus 155 a~~vILAtGG~ 165 (409)
T PF03486_consen 155 ADAVILATGGK 165 (409)
T ss_dssp ESEEEE----S
T ss_pred CCEEEEecCCC
Confidence 99999999975
No 98
>PRK06834 hypothetical protein; Provisional
Probab=99.38 E-value=1.1e-11 Score=117.93 Aligned_cols=140 Identities=22% Similarity=0.285 Sum_probs=91.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC--C-----CcCC--------CCCCCee-----ee-cCCcc-
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA--S-----LWKK--------RAYDRMK-----LH-LAKQF- 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g--~-----~~~~--------~~~~~~~-----~~-~~~~~- 58 (381)
|+++||+||||||+|+++|..|+++|++|+|||+.+... + .+.. ..+..+. .. .....
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 788999999999999999999999999999999876421 1 1100 0000000 00 00000
Q ss_pred -cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 59 -CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
..+...+....+.....+..+.+.+.+.+++.+++++++++++++..++ +.+.+++.++ .++++|+||.|+|
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~g-----~~i~a~~vVgADG 153 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSDG-----RTLRAQYLVGCDG 153 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECCC-----CEEEeCEEEEecC
Confidence 0011111101111223456788888888888899999999999998765 4556666554 4799999999999
Q ss_pred CCCCCCCCCC
Q 035902 138 ENGLIPEVPG 147 (381)
Q Consensus 138 ~~~~~~~~~g 147 (381)
.++...+..|
T Consensus 154 ~~S~vR~~lg 163 (488)
T PRK06834 154 GRSLVRKAAG 163 (488)
T ss_pred CCCCcHhhcC
Confidence 9966554433
No 99
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.36 E-value=1.1e-11 Score=107.46 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=87.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC-CCCeeeec-CCcccccCCCCCCCCCC--CCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA-YDRMKLHL-AKQFCELPHMPFPSRTP--TFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~ 77 (381)
++||+||||||||++||+.|++.|++|+|+|+...+|+ .|.... ++...... ...++.....++....+ ....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 48999999999999999999999999999999987765 443211 11111100 00111111111111101 123567
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEee------cCCCceEEEEeCEEEEccCCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKN------TALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++...+.+.+.+.+++++.+++|.++..+++.....+.... +...+...++++.||+|||...
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 78888888888889999999999998765422222233221 1122346899999999999873
No 100
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.35 E-value=8.9e-12 Score=111.44 Aligned_cols=134 Identities=18% Similarity=0.296 Sum_probs=86.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCC-----CCCeeee--------cCCcccccC----CCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRA-----YDRMKLH--------LAKQFCELP----HMPF 66 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~-----~~~~~~~--------~~~~~~~~~----~~~~ 66 (381)
+||+|||||++|+++|+.|++.|.+|+|+|+....+..+.... ...+... ....++... ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 6999999999999999999999999999999876543222110 0000000 000000000 0111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.......++..+.+.+.+.+.+.++++++++++.++..++ +.+.+.+.++ ...+++|+||+|+|......
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~~----~~~~~a~~vv~a~G~~s~~~ 151 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRGG----EGTVTAKIVIGADGSRSIVA 151 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcCc----cEEEEeCEEEECCCcchHHH
Confidence 11111235677888888888888899999999999988765 4444544332 25799999999999985433
No 101
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.34 E-value=2e-11 Score=105.55 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=88.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC-CCCeeeec-CCcccccCCCCCCCCCC--CCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA-YDRMKLHL-AKQFCELPHMPFPSRTP--TFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~ 77 (381)
++||+||||||+|++||+.|++.|.+|+|+|++..+|+ .|.... ++.+.... ...+......++...-. ....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 48999999999999999999999999999999988764 554321 11111110 01111111222211111 123456
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCC-CeEEEEEee------cCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENA-KAWIIVAKN------TALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~------~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++.+.+.+.+.+.+++++.++.+.++..+++. ....|.++. +...+...++++.||.|||..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 78888888888889999999999998876532 122233321 111234689999999999976
No 102
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1e-11 Score=100.22 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=92.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC-CCCeeeecCCc-ccccCCCCCCCCCCC--CCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA-YDRMKLHLAKQ-FCELPHMPFPSRTPT--FVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~ 77 (381)
+.||+||||||+|++||++|++.|.||+|||++-.+|| .|.-.+ ++.+....+.. +..-...++.+.-+. .....
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 47999999999999999999999999999999887765 787543 44444433322 222222333332222 23455
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCC------eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAK------AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~------~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++...+...+-+.+..+...+.|.++-..++.. +|+-....+...++..+++++||-|||-.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 666666666666788888888999987766422 23322233344556789999999999976
No 103
>PRK06184 hypothetical protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=116.32 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=87.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCC------------------CCCCCeeeecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS------LWKK------------------RAYDRMKLHLAK 56 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~------~~~~------------------~~~~~~~~~~~~ 56 (381)
|+++||+||||||+|+++|..|+++|++|+|||+.+.... .+.. ..+..+......
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 8889999999999999999999999999999999864321 1100 001111110000
Q ss_pred c-ccccCCC-------CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE
Q 035902 57 Q-FCELPHM-------PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128 (381)
Q Consensus 57 ~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 128 (381)
. ....... ..+........+..+.+.+.+.+.+.++++++++++.++..++ +.+.+++.+.. +.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~--~~~~i~ 156 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPA--GEETVR 156 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCC--CeEEEE
Confidence 0 0000000 0000011134456677788888888899999999999998765 44556553221 126799
Q ss_pred eCEEEEccCCCCCC
Q 035902 129 ARYLVVATGENGLI 142 (381)
Q Consensus 129 ~d~vIlAtG~~~~~ 142 (381)
+|+||.|+|.+..+
T Consensus 157 a~~vVgADG~~S~v 170 (502)
T PRK06184 157 ARYLVGADGGRSFV 170 (502)
T ss_pred eCEEEECCCCchHH
Confidence 99999999998543
No 104
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.33 E-value=1.9e-11 Score=113.59 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=85.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-C----CCCCCcCC-------------CCCCCeeeecCCcccccCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERE-D----CSASLWKK-------------RAYDRMKLHLAKQFCELPHMP 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~----~~g~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 65 (381)
|||+||||||||+++|+.|++.|++|+|+|+. . |.++.... ..+..+....+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999987 2 22221100 011111111111100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecC---CCceEEEEeCEEEEccCCCCCC
Q 035902 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA---LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
....+.....+..+.+++.+.+.+.|++++. +.++++..++ +.+.++..++. .++..++++|+||.|+|..+.+
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDR--DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcC--CeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 1111112367888999999988888988864 4688887655 55667766421 1223579999999999988554
Q ss_pred C
Q 035902 143 P 143 (381)
Q Consensus 143 ~ 143 (381)
.
T Consensus 158 ~ 158 (388)
T TIGR02023 158 A 158 (388)
T ss_pred H
Confidence 3
No 105
>PRK08013 oxidoreductase; Provisional
Probab=99.33 E-value=1.6e-11 Score=114.50 Aligned_cols=139 Identities=19% Similarity=0.262 Sum_probs=89.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---C----------------------CcCC------CCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---S----------------------LWKK------RAYDR 49 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---~----------------------~~~~------~~~~~ 49 (381)
|+++||+||||||+|+++|..|++.|++|+|+|+.+... + .|.. ..+..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 778999999999999999999999999999999876421 1 0100 00011
Q ss_pred eeeecCCcccccCCCCC-CCCCC---CCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCce
Q 035902 50 MKLHLAKQFCELPHMPF-PSRTP---TFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAY 124 (381)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 124 (381)
+........... .+.. ....+ ....+..+.+.+.+.+... ++++++++++.++..++ ....+++.++
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (400)
T PRK08013 81 MEVWDKDSFGRI-AFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKDG----- 152 (400)
T ss_pred EEEEeCCCCceE-EEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcCC-----
Confidence 111000000000 0000 00111 1245677788887777664 78999999999997765 4455777665
Q ss_pred EEEEeCEEEEccCCCCCCCCCCC
Q 035902 125 EEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 125 ~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++++|+||.|+|.++.+...-|
T Consensus 153 ~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 153 SMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred CEEEeeEEEEeCCCCcHHHHHcC
Confidence 57999999999999966554333
No 106
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.32 E-value=3.2e-11 Score=96.66 Aligned_cols=125 Identities=20% Similarity=0.321 Sum_probs=84.1
Q ss_pred EEECCCHHHHHHHHHHHhC-----CCCeEEEecCCCC-CCCcCCCCCCCeeeecC------------CcccccCCCCC--
Q 035902 7 VIVGAGPAGLATSACLNNL-----SVPNIILEREDCS-ASLWKKRAYDRMKLHLA------------KQFCELPHMPF-- 66 (381)
Q Consensus 7 vIIGaG~aG~~~A~~l~~~-----g~~v~lie~~~~~-g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-- 66 (381)
+|||||++|++++.+|.++ ..+|+|||++... |+.|.....+...++.+ ..+..|-....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999988 4599999997654 23665542222222222 12221111111
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHh------CCcc-ccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEcc
Q 035902 67 ---PSRTPTFVPRISFINYVDNYVSQM------GINP-RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVAT 136 (381)
Q Consensus 67 ---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAt 136 (381)
......|+++..+.+|+++.++.. ++++ +...+|++++..+ +.|.+.+.++ ..+.+|.||+||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g-----~~~~~d~VvLa~ 153 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADG-----QSIRADAVVLAT 153 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCC-----CEEEeCEEEECC
Confidence 123346889999999988776653 3333 3456888888876 5588888887 778999999999
Q ss_pred CC
Q 035902 137 GE 138 (381)
Q Consensus 137 G~ 138 (381)
|.
T Consensus 154 Gh 155 (156)
T PF13454_consen 154 GH 155 (156)
T ss_pred CC
Confidence 95
No 107
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.31 E-value=5.4e-11 Score=111.62 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=86.0
Q ss_pred CC--cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-------cCCC---CCCC---------eeeec-----
Q 035902 1 ME--EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-------WKKR---AYDR---------MKLHL----- 54 (381)
Q Consensus 1 M~--~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-------~~~~---~~~~---------~~~~~----- 54 (381)
|+ ++||+||||||||++||+.|+++|++|+|+|+...++.. +... .++. .....
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 80 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEE
Confidence 64 399999999999999999999999999999998655421 1100 0000 00000
Q ss_pred -CCccc--ccCCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 55 -AKQFC--ELPHMP--FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 55 -~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
..... .+.... .+....-...+.++.+++.+.+++.|++++.+++|+++..++ +.+.+...++ ..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g-----~~i~A 153 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADG-----DVIEA 153 (428)
T ss_pred cCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCC-----cEEEC
Confidence 00000 000000 000001123577888888888888999999999999987654 4433333333 57899
Q ss_pred CEEEEccCCCCCCC
Q 035902 130 RYLVVATGENGLIP 143 (381)
Q Consensus 130 d~vIlAtG~~~~~~ 143 (381)
+.||+|+|......
T Consensus 154 ~~VI~A~G~~s~l~ 167 (428)
T PRK10157 154 KTVILADGVNSILA 167 (428)
T ss_pred CEEEEEeCCCHHHH
Confidence 99999999875433
No 108
>PRK08244 hypothetical protein; Provisional
Probab=99.30 E-value=6e-11 Score=113.76 Aligned_cols=138 Identities=16% Similarity=0.250 Sum_probs=86.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC--------C----------CCCCeeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK--------R----------AYDRMKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~--------~----------~~~~~~~~~~~~~ 58 (381)
++||+||||||+|+++|..|++.|++|+|||+.+..... +.. . .+...........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 489999999999999999999999999999997643110 000 0 0000110000000
Q ss_pred cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 59 CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
..+........+....++..+.+.+.+.+++.+++++++++++++..++ +...+++.+.. +..++++|+||.|+|.
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~--g~~~i~a~~vVgADG~ 157 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGPD--GLRTLTSSYVVGADGA 157 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeCC--ccEEEEeCEEEECCCC
Confidence 0000000000111124566788888888888899999999999998765 44556655321 1257999999999999
Q ss_pred CCCCCC
Q 035902 139 NGLIPE 144 (381)
Q Consensus 139 ~~~~~~ 144 (381)
++.+..
T Consensus 158 ~S~vR~ 163 (493)
T PRK08244 158 GSIVRK 163 (493)
T ss_pred ChHHHH
Confidence 854433
No 109
>PRK06847 hypothetical protein; Provisional
Probab=99.29 E-value=4.4e-11 Score=110.86 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=89.2
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC----CcCC----------C----------CCCCeeeecC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS----LWKK----------R----------AYDRMKLHLA 55 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~----~~~~----------~----------~~~~~~~~~~ 55 (381)
|. .+||+|||||++|+++|..|++.|++|+|+|+.+.... .... . ....+.....
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 54 38899999999999999999999999999998864321 0000 0 0011111100
Q ss_pred Cc--ccccCCCC-CCCCC--CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 56 KQ--FCELPHMP-FPSRT--PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 56 ~~--~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.. ...++... ....+ .....+.++.+.+.+.+.+.++++++++++.++..++ +.+.+.+.++ .++.+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad 153 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDG-----TTGRYD 153 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCC-----CEEEcC
Confidence 00 00000000 00011 1234577888888888888899999999999998765 5566777665 579999
Q ss_pred EEEEccCCCCCCC
Q 035902 131 YLVVATGENGLIP 143 (381)
Q Consensus 131 ~vIlAtG~~~~~~ 143 (381)
.||+|+|.++...
T Consensus 154 ~vI~AdG~~s~~r 166 (375)
T PRK06847 154 LVVGADGLYSKVR 166 (375)
T ss_pred EEEECcCCCcchh
Confidence 9999999986544
No 110
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.29 E-value=3.9e-11 Score=111.58 Aligned_cols=137 Identities=21% Similarity=0.267 Sum_probs=90.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC------CCCCCeeeecC--------CcccccCCC--
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK------RAYDRMKLHLA--------KQFCELPHM-- 64 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~------~~~~~~~~~~~--------~~~~~~~~~-- 64 (381)
|.++||+||||||||++||+.|++.|++|+|+|+...+|..... .....+..... ......+..
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 45799999999999999999999999999999998766642211 00111110000 000000000
Q ss_pred --CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 65 --PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+....-...+..+.++|.+.+++.|.+++.++.+..+..++ ....+....+. .++++++||.|+|+....
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~--~~~~~~~~~~~----~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED--DGVVVGVRAGD----DEVRAKVVIDADGVNSAL 154 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC--CcEEEEEEcCC----EEEEcCEEEECCCcchHH
Confidence 0000001133577888999999999999999999999998876 33334433321 689999999999998444
Q ss_pred C
Q 035902 143 P 143 (381)
Q Consensus 143 ~ 143 (381)
.
T Consensus 155 ~ 155 (396)
T COG0644 155 A 155 (396)
T ss_pred H
Confidence 3
No 111
>PRK10015 oxidoreductase; Provisional
Probab=99.27 E-value=1.7e-10 Score=108.11 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=84.7
Q ss_pred CC--cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc------CCCC----CCCeeeecC------Cccccc-
Q 035902 1 ME--EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW------KKRA----YDRMKLHLA------KQFCEL- 61 (381)
Q Consensus 1 M~--~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~------~~~~----~~~~~~~~~------~~~~~~- 61 (381)
|+ ++||+||||||||++||+.|++.|.+|+|||+.+.++... .... .+.+....+ .....+
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 80 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEE
Confidence 64 4899999999999999999999999999999987543211 0000 010000000 000000
Q ss_pred -----CCCCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 62 -----PHMPFPS-------RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 62 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
....+.. ...-...+..+.+++.+.+++.|++++.+++|+++..++ +.+.....++ ..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~-----~~i~A 153 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGD-----DILEA 153 (429)
T ss_pred eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCC-----eEEEC
Confidence 0000000 001123567788888888888899999999999987654 3433222222 57999
Q ss_pred CEEEEccCCCCCC
Q 035902 130 RYLVVATGENGLI 142 (381)
Q Consensus 130 d~vIlAtG~~~~~ 142 (381)
+.||+|+|.....
T Consensus 154 ~~VI~AdG~~s~v 166 (429)
T PRK10015 154 NVVILADGVNSML 166 (429)
T ss_pred CEEEEccCcchhh
Confidence 9999999987544
No 112
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.26 E-value=4e-11 Score=110.14 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=88.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC----------------------C--CC--CeeeecC-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR----------------------A--YD--RMKLHLA- 55 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~----------------------~--~~--~~~~~~~- 55 (381)
++||+|||||++|+++|..|+++|++|+|||+.+......... . .. .......
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 4799999999999999999999999999999986442211000 0 00 0000000
Q ss_pred ----------CcccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceE
Q 035902 56 ----------KQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125 (381)
Q Consensus 56 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 125 (381)
.....+. ............+.++.+.|.+.+++.++++++++++.++..+. ....+.+.+...++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~ 157 (356)
T PF01494_consen 81 SDSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEE 157 (356)
T ss_dssp TTSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEE
T ss_pred CCccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCcee
Confidence 0000000 00000111234577889999999988899999999999998776 4445666665555667
Q ss_pred EEEeCEEEEccCCCCCCCC
Q 035902 126 EYVARYLVVATGENGLIPE 144 (381)
Q Consensus 126 ~~~~d~vIlAtG~~~~~~~ 144 (381)
++++|.||.|.|.+..+..
T Consensus 158 ~i~adlvVgADG~~S~vR~ 176 (356)
T PF01494_consen 158 TIEADLVVGADGAHSKVRK 176 (356)
T ss_dssp EEEESEEEE-SGTT-HHHH
T ss_pred EEEEeeeecccCcccchhh
Confidence 8999999999999965443
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.24 E-value=1.3e-10 Score=108.19 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=88.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC----C-C-------------------cCC------CCCCCeee
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA----S-L-------------------WKK------RAYDRMKL 52 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g----~-~-------------------~~~------~~~~~~~~ 52 (381)
.+||+||||||+|+++|+.|+++|++|+|||+.+... + . |.. ..+..+..
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 5899999999999999999999999999999975321 0 0 000 00001100
Q ss_pred ecCC--cccccCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 53 HLAK--QFCELPHMPF-PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 53 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
.... ....+..... .........+..+.+.+.+.+++.+++++++++|+++..++ +.+.+++.++ ..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~a 158 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDDG-----RRLEA 158 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECCC-----CEEEe
Confidence 0000 0000000000 00001123456778888888888899999999999998765 5566776655 57999
Q ss_pred CEEEEccCCCCCCCCCCC
Q 035902 130 RYLVVATGENGLIPEVPG 147 (381)
Q Consensus 130 d~vIlAtG~~~~~~~~~g 147 (381)
|.||.|+|..+.+....|
T Consensus 159 ~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 159 ALAIAADGAASTLRELAG 176 (392)
T ss_pred CEEEEecCCCchHHHhhc
Confidence 999999999965554433
No 114
>PRK07190 hypothetical protein; Provisional
Probab=99.23 E-value=1.4e-10 Score=110.23 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=84.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------CCC----------CCeeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------RAY----------DRMKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~----------~~~~~~~~~~~ 58 (381)
.+||+||||||+|+++|..|+++|.+|+|||+.+.....-+. ..+ ..........+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 489999999999999999999999999999998643211100 000 00000000001
Q ss_pred cccCC--CC-CC---CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 59 CELPH--MP-FP---SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 59 ~~~~~--~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
..... +. .+ .......++..+.+.+.+.+++.|++++++++|+++..++ +.+.+.+.++ +++++++|
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g-----~~v~a~~v 157 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNG-----ERIQSRYV 157 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCC-----cEEEeCEE
Confidence 00000 00 00 0001123456777788888888899999999999998865 4455665554 58999999
Q ss_pred EEccCCCCC
Q 035902 133 VVATGENGL 141 (381)
Q Consensus 133 IlAtG~~~~ 141 (381)
|.|+|.+..
T Consensus 158 VgADG~~S~ 166 (487)
T PRK07190 158 IGADGSRSF 166 (487)
T ss_pred EECCCCCHH
Confidence 999999843
No 115
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.23 E-value=1.2e-10 Score=108.30 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=83.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCC----Ceeeec--CCcccc-----cCCCCCCCCCC-C
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYD----RMKLHL--AKQFCE-----LPHMPFPSRTP-T 72 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~----~~~~~~--~~~~~~-----~~~~~~~~~~~-~ 72 (381)
||+|||||+||+++|+.|++.|.+|+|||+++..++......+. .+.... ...+.. .+........+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999999999999999988776522211111 010000 000000 00000000001 1
Q ss_pred CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 73 FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+..+.+.+.+.+.+.++.++ .+++.++.... ...+.|++.++ ..++++.||+|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g-----~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGG-----QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCC-----CEEEeCEEEECCCCch
Confidence 25577888888888887787764 66788877652 35566777665 5799999999999986
No 116
>PLN02463 lycopene beta cyclase
Probab=99.23 E-value=1.3e-10 Score=108.64 Aligned_cols=132 Identities=18% Similarity=0.255 Sum_probs=84.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-----CCcCCCCCCCeee------ecCCcccccCC-CCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-----SLWKKRAYDRMKL------HLAKQFCELPH-MPFPSRT 70 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-----~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~ 70 (381)
.+||+||||||||+++|..|++.|++|+|+|+.+... +.|... ...+.+ ..+........ .......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 4899999999999999999999999999999975322 122100 000000 00000000000 0000000
Q ss_pred C-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 71 P-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+ ....+.++.+.+.+.+.+.+++++ ..+|.++...+ +.+.|+++++ ..+++|.||+|+|..+...
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~dG-----~~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDDG-----VKIQASLVLDATGFSRCLV 172 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECCC-----CEEEcCEEEECcCCCcCcc
Confidence 1 134677888888888887888874 57888888765 5567888776 6899999999999986543
No 117
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.23 E-value=9.4e-11 Score=95.45 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=81.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCC-CCCCeeeecCCc-ccccCCCCCCCCCCC--CCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKR-AYDRMKLHLAKQ-FCELPHMPFPSRTPT--FVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~ 77 (381)
++||+||||||+|++||+.|++.|++|++||++..+|| .|.-. .++.+....+.. +..--..++.+.-+. .....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 48999999999999999999999999999999988876 67653 355555544322 221112222211111 23456
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe------ecCCCceEEEEeCEEEEccCCCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK------NTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~------~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++...|...+-+.|..+...+.|.++-..+++..--|.++ .+.+.++..+++++||-|||-...
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 6777766666667888888888988876652221112222 233456789999999999998743
No 118
>PRK09126 hypothetical protein; Provisional
Probab=99.22 E-value=1.1e-10 Score=108.77 Aligned_cols=140 Identities=24% Similarity=0.275 Sum_probs=85.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-------C----CcCC--------CCCCCeeee--cC-Ccc
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-------S----LWKK--------RAYDRMKLH--LA-KQF 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-------~----~~~~--------~~~~~~~~~--~~-~~~ 58 (381)
|+++||+||||||+|+++|..|++.|++|+|+|+.+... | .+.. ..++.+... .+ ...
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 778999999999999999999999999999999986421 1 0000 000000000 00 000
Q ss_pred --cccC---CCCCCC------CCCCCCCHHHHHHHHHHHH-HHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 59 --CELP---HMPFPS------RTPTFVPRISFINYVDNYV-SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 59 --~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
..-. ...++. ......++..+.+.+.+.+ +..+++++++++|+++...+ +.+.|.+.++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~g-----~~ 153 (392)
T PRK09126 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLANG-----RR 153 (392)
T ss_pred EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcCC-----CE
Confidence 0000 000100 0001123445555554444 44688999999999997755 5566777665 57
Q ss_pred EEeCEEEEccCCCCCCCCCCC
Q 035902 127 YVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++|+||.|+|..+.....-|
T Consensus 154 ~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 154 LTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred EEeCEEEEeCCCCchhhHhcC
Confidence 999999999999866654433
No 119
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.22 E-value=3.5e-10 Score=109.53 Aligned_cols=138 Identities=22% Similarity=0.281 Sum_probs=88.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------C----------CCCCeeeecCC--
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------R----------AYDRMKLHLAK-- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~----------~~~~~~~~~~~-- 56 (381)
++||+||||||+|+++|..|++.|++|+|||+........+. . ....+......
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 589999999999999999999999999999998754321110 0 01111111000
Q ss_pred cccccCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 57 QFCELPH-MPFPSRTP--TFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 57 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
....+.. ......++ ....+.++.+.+.+.+.+. +++++++++++++..++ +.+.+++.+. .++.+++++|+|
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~-~G~~~~i~ad~v 166 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDA-DGQRETVRARYV 166 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcC-CCCEEEEEEEEE
Confidence 0111110 00001111 2334567777887777664 88999999999998765 4566666532 223468999999
Q ss_pred EEccCCCCCCC
Q 035902 133 VVATGENGLIP 143 (381)
Q Consensus 133 IlAtG~~~~~~ 143 (381)
|.|+|.+..+.
T Consensus 167 VgADG~~S~vR 177 (538)
T PRK06183 167 VGCDGANSFVR 177 (538)
T ss_pred EecCCCchhHH
Confidence 99999985543
No 120
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.22 E-value=1.3e-10 Score=108.69 Aligned_cols=138 Identities=21% Similarity=0.277 Sum_probs=88.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCC--------CcCC--------CC----------CCCeeeecC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSAS--------LWKK--------RA----------YDRMKLHLA 55 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~--------~~~~--------~~----------~~~~~~~~~ 55 (381)
+||+||||||+|+++|..|++.| ++|+|+|+.+.... .+.. .. ...+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 89999999999999999999995 89999999764210 0000 00 001111000
Q ss_pred Cc-------ccccCCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE
Q 035902 56 KQ-------FCELPHM-PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY 127 (381)
Q Consensus 56 ~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~ 127 (381)
.. ...+... .....+.....+..+.+.+.+.+.+.+++++++++|+++..++ +.+.+++.++ ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g-----~~~ 154 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDG-----SVL 154 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCC-----CEE
Confidence 00 0000000 0000111134677888888888888899999999999998765 5566777665 579
Q ss_pred EeCEEEEccCCCCCCCCCCCC
Q 035902 128 VARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 128 ~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.+|.||.|+|..+......|.
T Consensus 155 ~ad~vI~AdG~~S~vr~~~g~ 175 (403)
T PRK07333 155 EARLLVAADGARSKLRELAGI 175 (403)
T ss_pred EeCEEEEcCCCChHHHHHcCC
Confidence 999999999998665544443
No 121
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.20 E-value=1.1e-10 Score=109.28 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=85.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC------CcC-------CC---------CCCC-----------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS------LWK-------KR---------AYDR----------- 49 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~------~~~-------~~---------~~~~----------- 49 (381)
++||+|||||++|+++|+.|+++|++|+|||+.+.... .+. .. .++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 48999999999999999999999999999998762100 000 00 0010
Q ss_pred eeeecCCcc--cccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 50 MKLHLAKQF--CELPHMPFP-SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 50 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
+........ ..+...... ........+..+.+.+.+.+++.++++++++++.++..++ +.+.|++.++ .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g-----~~ 154 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLADG-----RQ 154 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECCC-----CE
Confidence 000000000 000000000 0001123345666666666666788899999999998765 4577777665 57
Q ss_pred EEeCEEEEccCCCCCCCCCCC
Q 035902 127 YVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++|+||.|+|.++.+...-|
T Consensus 155 ~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 155 LRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred EEeCEEEEecCCCchhHHhcC
Confidence 999999999999966554333
No 122
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.18 E-value=1.8e-10 Score=107.20 Aligned_cols=137 Identities=20% Similarity=0.292 Sum_probs=84.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-----C-------------cCC-----CCCCCeeeecCCc
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-----L-------------WKK-----RAYDRMKLHLAKQ 57 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-----~-------------~~~-----~~~~~~~~~~~~~ 57 (381)
|+++||+|||||++|+++|..|++.|.+|+|||+.+.... . |.. ..+..+.......
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 3458999999999999999999999999999999864321 1 110 0011111110000
Q ss_pred -cc-----ccCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 58 -FC-----ELPHMPFPS-RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 58 -~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.. .+....... .+.-...+..+.+.+.+.+.+.+...+++++|.++..++ +.+.+++.++ +.+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~a~ 157 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLADG-----TTLSAR 157 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECCC-----CEEEEe
Confidence 00 000000000 001124566777777777776643338899999997765 5677777665 579999
Q ss_pred EEEEccCCCCCCCC
Q 035902 131 YLVVATGENGLIPE 144 (381)
Q Consensus 131 ~vIlAtG~~~~~~~ 144 (381)
.||.|+|..+....
T Consensus 158 ~vI~AdG~~S~vr~ 171 (388)
T PRK07494 158 LVVGADGRNSPVRE 171 (388)
T ss_pred EEEEecCCCchhHH
Confidence 99999999865443
No 123
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.17 E-value=3.2e-10 Score=105.83 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCC----C-------CcCC--------CCCCCe--------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSA----S-------LWKK--------RAYDRM-------- 50 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g----~-------~~~~--------~~~~~~-------- 50 (381)
|+++||+||||||+|+++|+.|+++ |++|+|+|+..... + .+.. ..++.+
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 8889999999999999999999998 99999999952110 0 0000 001100
Q ss_pred --eeecCCccc--ccCCCCCCCCC-CCCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCce
Q 035902 51 --KLHLAKQFC--ELPHMPFPSRT-PTFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAY 124 (381)
Q Consensus 51 --~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 124 (381)
......... .+....+.... .....+..+.+.+.+.+.. .+++++++++++++..++ +.+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 000000000 00000000000 0123355666666666654 478889999999987654 5677777665
Q ss_pred EEEEeCEEEEccCCCCCCCC
Q 035902 125 EEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 125 ~~~~~d~vIlAtG~~~~~~~ 144 (381)
..+.+|+||.|+|.+..+.+
T Consensus 154 ~~~~a~~vI~AdG~~S~vr~ 173 (395)
T PRK05732 154 ETLTGRLLVAADGSHSALRE 173 (395)
T ss_pred CEEEeCEEEEecCCChhhHH
Confidence 57899999999999855443
No 124
>PRK06126 hypothetical protein; Provisional
Probab=99.17 E-value=7.4e-10 Score=107.63 Aligned_cols=140 Identities=24% Similarity=0.318 Sum_probs=86.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------------CCCCe--------------eee-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR--------------AYDRM--------------KLH- 53 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~--------------~~~~~--------------~~~- 53 (381)
+++|+||||||+|+++|..|+++|++|+|||+.+......... ....+ ...
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 4899999999999999999999999999999886332110000 00000 000
Q ss_pred -cCCccccc--CCCC----C--------CC-CCCCCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEE
Q 035902 54 -LAKQFCEL--PHMP----F--------PS-RTPTFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVA 116 (381)
Q Consensus 54 -~~~~~~~~--~~~~----~--------~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~ 116 (381)
.......+ .... . .. ......++..+.+.+.+.+.+ .+++++++++++++..++ +...+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEE
Confidence 00000000 0000 0 00 001134556677787777765 478999999999998765 4455666
Q ss_pred eecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 117 KNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 117 ~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+...++..++++|+||.|+|.++.+.+
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~VR~ 192 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSAVRR 192 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchHHHH
Confidence 5533344468999999999999955443
No 125
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.16 E-value=4.8e-10 Score=103.38 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=90.0
Q ss_pred cEEEECCCHHHHHHHHHH--HhCCCCeEEEecCCCC--CC--CcCCCC--CCCeeeecCCcccc----cCCCC-CCCCCC
Q 035902 5 PVVIVGAGPAGLATSACL--NNLSVPNIILEREDCS--AS--LWKKRA--YDRMKLHLAKQFCE----LPHMP-FPSRTP 71 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l--~~~g~~v~lie~~~~~--g~--~~~~~~--~~~~~~~~~~~~~~----~~~~~-~~~~~~ 71 (381)
||+|||||+||+++|++| ++.|.+|+|||++... +. +|.... ...+..-....+.. .+... .....+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7779999999998766 22 232110 00000000000000 00000 000001
Q ss_pred -CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCC
Q 035902 72 -TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGS 150 (381)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~ 150 (381)
....+..+.+++.+.+...+ ..++++.|.++.... ..+.+.+.+| ..++++.||.|+|..+....-.+...
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~--~~~~v~~~~g-----~~i~a~~VvDa~g~~~~~~~~~~~Q~ 152 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETG--DGVLVVLADG-----RTIRARVVVDARGPSSPKARPLGLQH 152 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecC--ceEEEEECCC-----CEEEeeEEEECCCcccccccccccce
Confidence 13567788888888887444 567889999998876 4556788887 68999999999997655333334444
Q ss_pred CCcceee
Q 035902 151 FEGEYMH 157 (381)
Q Consensus 151 ~~~~~~~ 157 (381)
+.|..+.
T Consensus 153 f~G~~v~ 159 (374)
T PF05834_consen 153 FYGWEVE 159 (374)
T ss_pred eEEEEEe
Confidence 5554433
No 126
>PRK07045 putative monooxygenase; Reviewed
Probab=99.16 E-value=7e-10 Score=103.25 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=85.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---C---CcCCC--------C-----------CCCeeeecCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---S---LWKKR--------A-----------YDRMKLHLAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---~---~~~~~--------~-----------~~~~~~~~~~~ 57 (381)
++||+||||||+|+++|..|++.|++|+|+|+.+... + .+... . ...+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 5899999999999999999999999999999887441 1 11100 0 00011100000
Q ss_pred ccccCCCCCCC----CCCCCCCHHHHHHHHHHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 58 FCELPHMPFPS----RTPTFVPRISFINYVDNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 58 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
... ..++.. .+.....+.++.+.+.+.+. ..+++++++++++++..+++...+.|++.++ +++++|.|
T Consensus 85 ~~~--~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-----~~~~~~~v 157 (388)
T PRK07045 85 LIA--SLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG-----ERVAPTVL 157 (388)
T ss_pred EEE--EecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC-----CEEECCEE
Confidence 000 011111 11112356677777776665 3578899999999998765333345777665 57999999
Q ss_pred EEccCCCCCCCC
Q 035902 133 VVATGENGLIPE 144 (381)
Q Consensus 133 IlAtG~~~~~~~ 144 (381)
|.|+|.+..+..
T Consensus 158 IgADG~~S~vR~ 169 (388)
T PRK07045 158 VGADGARSMIRD 169 (388)
T ss_pred EECCCCChHHHH
Confidence 999999955444
No 127
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.16 E-value=2.8e-09 Score=101.43 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=78.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC---------CCCeeeec---C----CcccccCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA---------YDRMKLHL---A----KQFCELPHMPF 66 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~---------~~~~~~~~---~----~~~~~~~~~~~ 66 (381)
+||+|||||+||+.+|..+++.|.+|+|+|++...++ ...... ...+..-. . .....+.....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 6899999999999999999999999999998743221 111000 00000000 0 00000111100
Q ss_pred ---CC-CC-CCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 67 ---PS-RT-PTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 67 ---~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+. +. .....+..+...+++.+++. ++.+ +...++++..++++..+.|.+.++ ..+.|+.||+|||.+.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~I-le~~Vv~li~e~~g~V~GV~t~~G-----~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSL-FQGEVEDLILEDNDEIKGVVTQDG-----LKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEEecCCcEEEEEECCC-----CEEECCEEEEccCccc
Confidence 00 00 11345566777888777776 5565 455677776542234455777665 5799999999999995
Q ss_pred C
Q 035902 141 L 141 (381)
Q Consensus 141 ~ 141 (381)
.
T Consensus 155 ~ 155 (617)
T TIGR00136 155 R 155 (617)
T ss_pred C
Confidence 4
No 128
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.15 E-value=5.2e-10 Score=104.06 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=85.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC----CCcCCC--------------CCCCeeeecCCcccccCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA----SLWKKR--------------AYDRMKLHLAKQFCELPHMP 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g----~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 65 (381)
+||+||||||||++||+.|++.|++|+|+|+....+ +..... ....+....+..........
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999875332 111100 01111111111100000000
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEe-CCCCeEEEEEeecC----CCceEEEEeCEEEEccCCC
Q 035902 66 FPS-RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYD-ENAKAWIIVAKNTA----LDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 66 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~~v~~~~~~----~~~~~~~~~d~vIlAtG~~ 139 (381)
... .+-....+..+.+++.+.+.+.|++++.++ +.++... ...+.+.|+..... .++..+++|++||.|+|..
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 000 111136788888999999988899986664 6666432 12244556543211 1233579999999999999
Q ss_pred CCCCCCCCC
Q 035902 140 GLIPEVPGL 148 (381)
Q Consensus 140 ~~~~~~~g~ 148 (381)
+.+....|.
T Consensus 160 S~v~~~~g~ 168 (398)
T TIGR02028 160 SRVAKEIDA 168 (398)
T ss_pred hHHHHHhCC
Confidence 766543343
No 129
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.15 E-value=4.9e-10 Score=104.02 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=84.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC--C--C---C-----CcCC--------CCCCCeeee--cCC-c
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC--S--A---S-----LWKK--------RAYDRMKLH--LAK-Q 57 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~--~--g---~-----~~~~--------~~~~~~~~~--~~~-~ 57 (381)
|+.+||+||||||+|+++|..|++.|++|+|||+.+. . . + .+.. ..++.+... .+. .
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKR 80 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccce
Confidence 7778999999999999999999999999999998641 1 0 0 0000 011111000 000 0
Q ss_pred cc------ccCCCCCC-CCCCC---CCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 58 FC------ELPHMPFP-SRTPT---FVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 58 ~~------~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
+. ....+... ...+. ...+..+...+.+.++. .++++++++++++++.++ +...+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~g-----~~ 153 (384)
T PRK08849 81 LETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLESG-----AE 153 (384)
T ss_pred EEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECCC-----CE
Confidence 00 00000000 00011 12233455555444443 468899999999998765 4566888776 68
Q ss_pred EEeCEEEEccCCCCCCCCCCC
Q 035902 127 YVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++|.||.|+|..+......|
T Consensus 154 ~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 154 IEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred EEeeEEEEecCCCchhHHhcC
Confidence 999999999999976655433
No 130
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.15 E-value=6.2e-10 Score=103.34 Aligned_cols=136 Identities=23% Similarity=0.270 Sum_probs=89.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-CCCCC-----CcCCC--------------------CCCCeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE-DCSAS-----LWKKR--------------------AYDRMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~~~g~-----~~~~~--------------------~~~~~~~~~~~ 56 (381)
.+||+||||||+|+++|..|++.|++|+|||+. ...-. ..... .+..+......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 489999999999999999999999999999998 21110 00000 01111111111
Q ss_pred c-ccccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCEE
Q 035902 57 Q-FCELPHMPFP-SRTPTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARYL 132 (381)
Q Consensus 57 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~v 132 (381)
. ...+...... ..+.....+.++...|.+.+...+ ++++++++|+.++.++ ...++++. +| +.++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG-----~~~~a~ll 154 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDG-----ETLDADLL 154 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCC-----cEEecCEE
Confidence 0 1111111111 111234567888888888887765 8999999999999876 34447777 66 58999999
Q ss_pred EEccCCCCCCCCC
Q 035902 133 VVATGENGLIPEV 145 (381)
Q Consensus 133 IlAtG~~~~~~~~ 145 (381)
|.|.|.++.+.+.
T Consensus 155 VgADG~~S~vR~~ 167 (387)
T COG0654 155 VGADGANSAVRRA 167 (387)
T ss_pred EECCCCchHHHHh
Confidence 9999998554443
No 131
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.15 E-value=4.9e-10 Score=104.85 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=84.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-C--CCC--------CcCC--------CCCCCe-----------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-C--SAS--------LWKK--------RAYDRM----------- 50 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~--~g~--------~~~~--------~~~~~~----------- 50 (381)
|+.+||+||||||+|+++|..|++.|++|+|+|+.. . ++. .... ..++.+
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 556899999999999999999999999999999862 1 110 0000 001111
Q ss_pred eeecCCcccccCCCCCCC----CCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceE
Q 035902 51 KLHLAKQFCELPHMPFPS----RTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125 (381)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 125 (381)
........ ....+.... .+........+.+.+.+.+.+. +++++++++|+++..++ ....|++.++ +
T Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~g-----~ 153 (405)
T PRK08850 82 EVWEQDSF-ARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDNG-----Q 153 (405)
T ss_pred EEEeCCCC-ceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECCC-----C
Confidence 11000000 000000000 0011123445666666655553 68889999999998765 4456777665 5
Q ss_pred EEEeCEEEEccCCCCCCCCCCC
Q 035902 126 EYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 126 ~~~~d~vIlAtG~~~~~~~~~g 147 (381)
.+++|.||.|+|..+...+.-|
T Consensus 154 ~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 154 ALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred EEEeCEEEEeCCCCChhHHHcC
Confidence 7999999999999866554433
No 132
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.15 E-value=4.1e-10 Score=104.85 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=85.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC---CcCCC----------------CCCCeeee--cCCc---c
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS---LWKKR----------------AYDRMKLH--LAKQ---F 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~---~~~~~----------------~~~~~~~~--~~~~---~ 58 (381)
.+||+|||||++|+++|+.|++.|.+|+|+|+...... .|... ....+... .+.. +
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 48999999999999999999999999999999865421 22110 00000000 0000 0
Q ss_pred cccC--CCC---CCCCCCC---CCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 59 CELP--HMP---FPSRTPT---FVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 59 ~~~~--~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
.... ... .....+. ...+..+.+.+.+.+++.+ +.++ ++++.++..++ +.+.+++.++ .++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~g-----~~~~a 156 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLADG-----QVLRA 156 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECCC-----CEEEe
Confidence 0000 000 0001111 1346677888877777766 7777 88899887655 4566777665 57999
Q ss_pred CEEEEccCCCCCCCCCCC
Q 035902 130 RYLVVATGENGLIPEVPG 147 (381)
Q Consensus 130 d~vIlAtG~~~~~~~~~g 147 (381)
|+||.|+|.+......-|
T Consensus 157 ~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 157 DLVVGADGAHSWVRSQAG 174 (388)
T ss_pred eEEEEeCCCCchHHHhcC
Confidence 999999999865544333
No 133
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.13 E-value=5.6e-10 Score=104.02 Aligned_cols=136 Identities=18% Similarity=0.265 Sum_probs=84.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC----CC---------------------CcCCC------CCCCee
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS----AS---------------------LWKKR------AYDRMK 51 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~----g~---------------------~~~~~------~~~~~~ 51 (381)
++||+|||||++|+++|..|++.|++|+|||+.... ++ .|..- .+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 489999999999999999999999999999987521 10 01000 000000
Q ss_pred ee-cCCcccccCCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE
Q 035902 52 LH-LAKQFCELPHMPFPS-RTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128 (381)
Q Consensus 52 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 128 (381)
.. .......+....... .......+..+.+.+.+.+... +++++++++++++..++ +.+.|.+.++ .+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ 157 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLADG-----EEIQ 157 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECCC-----CEEE
Confidence 00 000000000000000 0011234566777777766665 88888999999987665 5567777665 5799
Q ss_pred eCEEEEccCCCCCCCCC
Q 035902 129 ARYLVVATGENGLIPEV 145 (381)
Q Consensus 129 ~d~vIlAtG~~~~~~~~ 145 (381)
+|.||.|+|..+.+...
T Consensus 158 a~~vI~AdG~~S~vR~~ 174 (391)
T PRK08020 158 AKLVIGADGANSQVRQM 174 (391)
T ss_pred eCEEEEeCCCCchhHHH
Confidence 99999999999665443
No 134
>PRK07236 hypothetical protein; Provisional
Probab=99.12 E-value=1.5e-09 Score=100.91 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=79.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC----CC-C-cCCC---CCCCeeeec------C---CcccccC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS----AS-L-WKKR---AYDRMKLHL------A---KQFCELP 62 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~----g~-~-~~~~---~~~~~~~~~------~---~~~~~~~ 62 (381)
|+.++|+|||||++|+++|..|++.|++|+|+|+.+.. |. . .... .+..+.... + ..+....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 55689999999999999999999999999999997632 11 0 0000 000000000 0 0000000
Q ss_pred CCCC-CCCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 63 HMPF-PSRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 63 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.... ....+ .......+.+.+.+.+ .+..++++++|+++..++ +.+++++.++ .++++|.||.|.|..+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad~vIgADG~~S 154 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFADG-----RRETADLLVGADGGRS 154 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECCC-----CEEEeCEEEECCCCCc
Confidence 0000 00001 1123344444443322 245689999999998765 5567887776 6799999999999985
Q ss_pred CCC
Q 035902 141 LIP 143 (381)
Q Consensus 141 ~~~ 143 (381)
.+.
T Consensus 155 ~vR 157 (386)
T PRK07236 155 TVR 157 (386)
T ss_pred hHH
Confidence 543
No 135
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=1e-09 Score=103.19 Aligned_cols=138 Identities=16% Similarity=0.222 Sum_probs=82.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-----CC---cCC--------CCCC----------CeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-----SL---WKK--------RAYD----------RMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-----~~---~~~--------~~~~----------~~~~~~~~ 56 (381)
.+||+|||||++|+++|..|++.|++|+|+|+.+... .. +.. .... .+......
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3899999999999999999999999999999986432 10 000 0000 00010000
Q ss_pred --cccccCCCCCCCCCCC-CCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 57 --QFCELPHMPFPSRTPT-FVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 57 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
....+........... ......+.+.+.+.+.+. +++++++++++++..++ +.+.+++.++ ++..++++|.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~--~~~~~i~adlv 173 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIE--GKQQTLQSKLV 173 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccC--CcceEEeeeEE
Confidence 0001110000000001 112345666666666554 68889999999997765 4566776542 12247999999
Q ss_pred EEccCCCCCCCC
Q 035902 133 VVATGENGLIPE 144 (381)
Q Consensus 133 IlAtG~~~~~~~ 144 (381)
|.|+|..+.+..
T Consensus 174 IgADG~~S~vR~ 185 (415)
T PRK07364 174 VAADGARSPIRQ 185 (415)
T ss_pred EEeCCCCchhHH
Confidence 999999865544
No 136
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.11 E-value=4e-10 Score=94.08 Aligned_cols=124 Identities=16% Similarity=0.235 Sum_probs=79.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCccc------------------------
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFC------------------------ 59 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~------------------------ 59 (381)
.+|+|||+|++|++||+.|+..|++|+||||+.-+||-......+....+....++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 46999999999999999999999999999999877774333222222222222221
Q ss_pred ----ccCCC---CCCCCCC--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 60 ----ELPHM---PFPSRTP--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 60 ----~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.+... +.++..+ ..+.-+.+.+++. . +++++++++|+.+...+ +.|+++++++. ....+|
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA---t--dL~V~~~~rVt~v~~~~--~~W~l~~~~g~----~~~~~d 150 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA---T--DLTVVLETRVTEVARTD--NDWTLHTDDGT----RHTQFD 150 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHh---c--cchhhhhhhhhhheecC--CeeEEEecCCC----cccccc
Confidence 11111 1111111 1122233333222 2 67889999999998875 78999997662 578899
Q ss_pred EEEEccCC
Q 035902 131 YLVVATGE 138 (381)
Q Consensus 131 ~vIlAtG~ 138 (381)
.||||.=.
T Consensus 151 ~vvla~PA 158 (331)
T COG3380 151 DVVLAIPA 158 (331)
T ss_pred eEEEecCC
Confidence 99998643
No 137
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.11 E-value=6.4e-10 Score=103.85 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=84.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC--------CCCC----------CeeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK--------RAYD----------RMKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~--------~~~~----------~~~~~~~~~~ 58 (381)
..||+|||||++|+++|..|++.|++|+|+|+.+..+.. +.. ...+ .+.......-
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 489999999999999999999999999999998754321 100 0000 0000000000
Q ss_pred cccCCCCCCC------CCC-CCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 59 CELPHMPFPS------RTP-TFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 59 ~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
......+... ..+ ....+.++.+.+.+.+.+. ++++++++++.++..++ +.+.+.+.++ .++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad 156 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQG-----NRWTGD 156 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcCC-----CEEecC
Confidence 0000000000 001 1245667777777777665 48889999999998654 4566776665 579999
Q ss_pred EEEEccCCCCCCC
Q 035902 131 YLVVATGENGLIP 143 (381)
Q Consensus 131 ~vIlAtG~~~~~~ 143 (381)
.||.|+|.++...
T Consensus 157 ~vV~AdG~~S~~r 169 (396)
T PRK08163 157 ALIGCDGVKSVVR 169 (396)
T ss_pred EEEECCCcChHHH
Confidence 9999999985543
No 138
>PRK06185 hypothetical protein; Provisional
Probab=99.10 E-value=1.1e-09 Score=102.73 Aligned_cols=138 Identities=18% Similarity=0.273 Sum_probs=83.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-----CcCC---------CC-----------CCCeeeecCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-----LWKK---------RA-----------YDRMKLHLAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-----~~~~---------~~-----------~~~~~~~~~~~ 57 (381)
++||+|||||++|+++|+.|++.|++|+|+|+.+.... .+.. .. +..+.......
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 59999999999999999999999999999998753311 1110 00 01111111111
Q ss_pred cc---ccCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FC---ELPHMPFPSRTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
.. .+.....+..+.....+..+.+.+.+.+.+. ++++++++++.++..++ +....+.+... ++...+++|.||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~--~g~~~i~a~~vI 162 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTP--DGPGEIRADLVV 162 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcC--CCcEEEEeCEEE
Confidence 00 1111111111112345667888887777654 78899999999998765 22222344321 112479999999
Q ss_pred EccCCCCCCC
Q 035902 134 VATGENGLIP 143 (381)
Q Consensus 134 lAtG~~~~~~ 143 (381)
.|+|......
T Consensus 163 ~AdG~~S~vr 172 (407)
T PRK06185 163 GADGRHSRVR 172 (407)
T ss_pred ECCCCchHHH
Confidence 9999985443
No 139
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.10 E-value=9.9e-10 Score=102.19 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=83.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC--------CcC--C---------CCCCCeeeecC---Cc--ccc
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS--------LWK--K---------RAYDRMKLHLA---KQ--FCE 60 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~--------~~~--~---------~~~~~~~~~~~---~~--~~~ 60 (381)
||+|||||++|+++|+.|++.|++|+|+|+.+..+. ... . ...+.+..... .. +..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999875321 000 0 00001100000 00 000
Q ss_pred cC-----CCCCCC-C---CCCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 61 LP-----HMPFPS-R---TPTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 61 ~~-----~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.. .++... . ......+..+.+.+.+.+.+.+ ++++++++|+++..++ +.+.+++.++ ..+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~~ 153 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDDG-----QQLRAR 153 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECCC-----CEEEee
Confidence 00 000000 0 0112456678888888777776 8899999999998765 5566777665 569999
Q ss_pred EEEEccCCCCCC
Q 035902 131 YLVVATGENGLI 142 (381)
Q Consensus 131 ~vIlAtG~~~~~ 142 (381)
.||.|+|.....
T Consensus 154 ~vi~adG~~S~v 165 (385)
T TIGR01988 154 LLVGADGANSKV 165 (385)
T ss_pred EEEEeCCCCCHH
Confidence 999999988543
No 140
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.09 E-value=1.1e-09 Score=102.87 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=84.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-----CCCCcCC-----C--------CCCCeeeecCCcc-cccCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-----SASLWKK-----R--------AYDRMKLHLAKQF-CELPH 63 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-----~g~~~~~-----~--------~~~~~~~~~~~~~-~~~~~ 63 (381)
.+||+||||||||+++|..|++.|++|+|+|+... .++.... . ....+....+... ..+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 48999999999999999999999999999998742 2221100 0 0011111111110 00000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC-CCeEEEEEeecC----CCceEEEEeCEEEEccCC
Q 035902 64 MPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN-AKAWIIVAKNTA----LDAYEEYVARYLVVATGE 138 (381)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~----~~~~~~~~~d~vIlAtG~ 138 (381)
...+..+-....+..+.++|.+.+.+.|++++.+ .+.+++...+ .+.+.|++.+.. .++..++++|.||.|+|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 0000000112678889999999898889988654 5777764321 244556654321 122357999999999998
Q ss_pred CCCCCC
Q 035902 139 NGLIPE 144 (381)
Q Consensus 139 ~~~~~~ 144 (381)
...+..
T Consensus 198 ~S~vrr 203 (450)
T PLN00093 198 NSRVAK 203 (450)
T ss_pred chHHHH
Confidence 855443
No 141
>PRK11445 putative oxidoreductase; Provisional
Probab=99.09 E-value=2.4e-09 Score=98.11 Aligned_cols=132 Identities=16% Similarity=0.250 Sum_probs=81.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---------C-CcCC--------CCC-CCeeeecCCcccccCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---------S-LWKK--------RAY-DRMKLHLAKQFCELPHM 64 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---------~-~~~~--------~~~-~~~~~~~~~~~~~~~~~ 64 (381)
+||+||||||||+++|..|++. ++|+|+|+.+..+ + .+.. ... +......+. .+.....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~~ 79 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAVKTI 79 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-cceeeEe
Confidence 8999999999999999999999 9999999876321 1 1100 000 000000000 0000000
Q ss_pred CCC------CCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCEEEEcc
Q 035902 65 PFP------SRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARYLVVAT 136 (381)
Q Consensus 65 ~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~vIlAt 136 (381)
... ...+ ....+.++.+.+.+.. ..++++++++.+.++...+ +.|.+... ++ ...++++|+||.|+
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~g---~~~~i~a~~vV~Ad 153 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWRED--DGYHVIFRADG---WEQHITARYLVGAD 153 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcC--CEEEEEEecCC---cEEEEEeCEEEECC
Confidence 000 0001 1356777777777643 4578899999999988765 55777753 33 22479999999999
Q ss_pred CCCCCCC
Q 035902 137 GENGLIP 143 (381)
Q Consensus 137 G~~~~~~ 143 (381)
|......
T Consensus 154 G~~S~vr 160 (351)
T PRK11445 154 GANSMVR 160 (351)
T ss_pred CCCcHHh
Confidence 9985543
No 142
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.09 E-value=1.4e-09 Score=103.67 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=78.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCee-----e--ecCCc----cc-----ccCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRMK-----L--HLAKQ----FC-----ELPH 63 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~~-----~--~~~~~----~~-----~~~~ 63 (381)
|.++||+|||||+||+.||..+++.|.+|+|+|++. .+|............ . +.... .. .+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 456999999999999999999999999999999873 444311111000000 0 00000 00 0000
Q ss_pred CCC---CCC--CCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 64 MPF---PSR--TPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 64 ~~~---~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
... +.. ......+..+...+.+.+.+. ++.+ +..+|.++..++ +....|.+.++ ..+.|+.||+|||
T Consensus 82 ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~-grV~GV~t~dG-----~~I~Ak~VIlATG 154 (618)
T PRK05192 82 LNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVEN-GRVVGVVTQDG-----LEFRAKAVVLTTG 154 (618)
T ss_pred cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecC-CEEEEEEECCC-----CEEECCEEEEeeC
Confidence 000 000 001233455666666666654 6775 567788776654 23333666665 6899999999999
Q ss_pred CCC
Q 035902 138 ENG 140 (381)
Q Consensus 138 ~~~ 140 (381)
.+.
T Consensus 155 TFL 157 (618)
T PRK05192 155 TFL 157 (618)
T ss_pred cch
Confidence 974
No 143
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.09 E-value=1.4e-09 Score=100.53 Aligned_cols=132 Identities=15% Similarity=0.216 Sum_probs=83.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC-------CC---C-------------cCC-----CCCCCeeeecC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS-------AS---L-------------WKK-----RAYDRMKLHLA 55 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~-------g~---~-------------~~~-----~~~~~~~~~~~ 55 (381)
+||+|||||++|+++|..|++.|++|+|+|+.+.. +. . |.. ..+..+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 78999999999999999999999999999986311 10 0 100 00111111111
Q ss_pred Cc--ccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 56 KQ--FCELPHMPFPSRTPTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 56 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
.. ...+... ....+.-...+.++.+.+.+.+.+.+ +.++++++++++..++ +.+.+.+.+ .++++|.|
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~------~~~~adlv 152 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDD------KQIKCNLL 152 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcC------CEEeeCEE
Confidence 00 0011100 00001112457788888888777764 7788899999987765 455676643 37999999
Q ss_pred EEccCCCCCCCC
Q 035902 133 VVATGENGLIPE 144 (381)
Q Consensus 133 IlAtG~~~~~~~ 144 (381)
|.|.|..+.+.+
T Consensus 153 IgADG~~S~vR~ 164 (374)
T PRK06617 153 IICDGANSKVRS 164 (374)
T ss_pred EEeCCCCchhHH
Confidence 999999966554
No 144
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.08 E-value=1.1e-09 Score=103.26 Aligned_cols=140 Identities=19% Similarity=0.250 Sum_probs=85.3
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CCCCeEEEecCC--CCC--------CCcCC----------------CCCCC----
Q 035902 4 VPVVIVGAGPAGLATSACLNN----LSVPNIILERED--CSA--------SLWKK----------------RAYDR---- 49 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~----~g~~v~lie~~~--~~g--------~~~~~----------------~~~~~---- 49 (381)
+||+||||||+|+++|+.|++ +|++|+|||+.+ ... +.+.. ..++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999998 799999999943 211 00000 00111
Q ss_pred -------eeeecCCc--ccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CccccccEEEEEEEe-----CCCCeE
Q 035902 50 -------MKLHLAKQ--FCELPHMPFPSRTPTFVPRISFINYVDNYVSQMG---INPRYHRSVESASYD-----ENAKAW 112 (381)
Q Consensus 50 -------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~i~~~-----~~~~~~ 112 (381)
+....... ...+........+....++..+.+.+.+.+.+.+ +++++++++.++... ++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 11000000 0001100000000112456677777777777654 889999999999753 112445
Q ss_pred EEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 113 IIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 113 ~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
+|++.++ +++++|+||.|.|....+.+.-|+
T Consensus 161 ~v~~~~g-----~~i~a~llVgADG~~S~vR~~~gi 191 (437)
T TIGR01989 161 HITLSDG-----QVLYTKLLIGADGSNSNVRKAANI 191 (437)
T ss_pred EEEEcCC-----CEEEeeEEEEecCCCChhHHHcCC
Confidence 6777665 689999999999999766654444
No 145
>PRK07588 hypothetical protein; Provisional
Probab=99.07 E-value=1.2e-09 Score=101.87 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=83.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC--C----CcCCC------------------CCCCeeeecCCc--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA--S----LWKKR------------------AYDRMKLHLAKQ-- 57 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g--~----~~~~~------------------~~~~~~~~~~~~-- 57 (381)
+||+|||||++|+++|+.|++.|++|+|+|+.+... + .|... ....+.......
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 479999999999999999999999999999876432 1 11110 011111110000
Q ss_pred ccccCCCCCCCCCC---CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEE
Q 035902 58 FCELPHMPFPSRTP---TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVV 134 (381)
Q Consensus 58 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIl 134 (381)
...+....+..... ....+..+.+.+.+.... +++++++++|.++..++ +.+.+.+.++ +.+++|.||.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~~d~vIg 152 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVETIFDDSIATIDEHR--DGVRVTFERG-----TPRDFDLVIG 152 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeEEEeCCEEeEEEECC--CeEEEEECCC-----CEEEeCEEEE
Confidence 00011000111111 123456666666554433 68899999999998765 5577877776 5689999999
Q ss_pred ccCCCCCCCC
Q 035902 135 ATGENGLIPE 144 (381)
Q Consensus 135 AtG~~~~~~~ 144 (381)
|.|.++.+..
T Consensus 153 ADG~~S~vR~ 162 (391)
T PRK07588 153 ADGLHSHVRR 162 (391)
T ss_pred CCCCCccchh
Confidence 9999966654
No 146
>PRK06753 hypothetical protein; Provisional
Probab=99.07 E-value=2.1e-09 Score=99.49 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=81.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC--------C----------CCCCeeeecCCcccc
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK--------R----------AYDRMKLHLAKQFCE 60 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~--------~----------~~~~~~~~~~~~~~~ 60 (381)
+|+|||||++|+++|..|++.|++|+|+|+.+..... +.. . ....+........ .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 6999999999999999999999999999998754211 000 0 0011111111000 0
Q ss_pred cCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 61 LPHMPFPSR-TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 61 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....++... ......+..+.+.+.+.++ +..+++++++++++.++ +.+.+++.++ ..+++|.||.|.|..
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~~~~vigadG~~ 151 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFADG-----ESEAFDLCIGADGIH 151 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECCC-----CEEecCEEEECCCcc
Confidence 000111111 1123456677777666554 34678999999998654 5567777766 678999999999988
Q ss_pred CCCC
Q 035902 140 GLIP 143 (381)
Q Consensus 140 ~~~~ 143 (381)
+.+.
T Consensus 152 S~vR 155 (373)
T PRK06753 152 SKVR 155 (373)
T ss_pred hHHH
Confidence 5443
No 147
>PRK07538 hypothetical protein; Provisional
Probab=99.07 E-value=5.2e-09 Score=98.15 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=83.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC----C--cCC--------CCC----------CCeeeecCCc--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS----L--WKK--------RAY----------DRMKLHLAKQ-- 57 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~----~--~~~--------~~~----------~~~~~~~~~~-- 57 (381)
+||+|||||++|+++|+.|+++|++|+|||+.+.+.. . +.. ..+ ..+.......
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 4799999999999999999999999999999864321 0 000 000 0111000000
Q ss_pred ccccCC-CCCCCCCCC-CCCHHHHHHHHHHHHHH-hC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FCELPH-MPFPSRTPT-FVPRISFINYVDNYVSQ-MG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
....+. ......++. ...+.++.+.|.+.+.+ .+ ..++++++|+++..++ ....+.+.++..++.+++++|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA--DVTVVFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC--CceEEEEeccCCCccceEEeeEEE
Confidence 000000 000001111 24577777777766644 45 3589999999998765 323455555433444689999999
Q ss_pred EccCCCCCCC
Q 035902 134 VATGENGLIP 143 (381)
Q Consensus 134 lAtG~~~~~~ 143 (381)
.|.|....+.
T Consensus 159 gADG~~S~vR 168 (413)
T PRK07538 159 GADGIHSAVR 168 (413)
T ss_pred ECCCCCHHHh
Confidence 9999985443
No 148
>PLN02697 lycopene epsilon cyclase
Probab=99.07 E-value=2.6e-09 Score=101.64 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=81.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---CCcCCCCCCCeeeec--CCccc---c-cCCC-CCCCCCC-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---SLWKKRAYDRMKLHL--AKQFC---E-LPHM-PFPSRTP- 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---~~~~~~~~~~~~~~~--~~~~~---~-~~~~-~~~~~~~- 71 (381)
.+||+||||||||+++|..|++.|++|+|||+..... |.|... ...+.... ...+. . .+.. ......+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 3899999999999999999999999999999864332 234211 10010000 00000 0 0000 0000000
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 72 TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
....+..+.+.+.+.+.+.++.+ ++++|.++..++ ++...+...++ ..++++.||+|+|..+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG-----~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDG-----RVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCC-----cEEECCEEEECCCcCh
Confidence 12567788888888888888886 778898887654 22222344444 6799999999999985
No 149
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.06 E-value=1.6e-09 Score=100.72 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=82.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCC----------cCC--------CCCCCe----------eeecC
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASL----------WKK--------RAYDRM----------KLHLA 55 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~----------~~~--------~~~~~~----------~~~~~ 55 (381)
||+||||||+|+++|..|+++| ++|+|+|+.+..... +.. ...+.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999997643110 000 000000 00000
Q ss_pred Ccc--cccCCCCCCCCCC-CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCE
Q 035902 56 KQF--CELPHMPFPSRTP-TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 56 ~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 131 (381)
... ..+....+..... -...+.++.+.+.+.+.+ .+++++++++|+++..++ +.+++++.++ ..+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad~ 153 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDNG-----QQLRAKL 153 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECCC-----CEEEeeE
Confidence 000 0000000000000 124467788888887777 489999999999998765 5567777665 5799999
Q ss_pred EEEccCCCCCC
Q 035902 132 LVVATGENGLI 142 (381)
Q Consensus 132 vIlAtG~~~~~ 142 (381)
||.|+|.+..+
T Consensus 154 vV~AdG~~S~v 164 (382)
T TIGR01984 154 LIAADGANSKV 164 (382)
T ss_pred EEEecCCChHH
Confidence 99999988543
No 150
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.04 E-value=1.1e-09 Score=100.71 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+.+.+.+.+++.|++++.+++|+++..++ +.++ |.+.++ + +++|.||+|+|.+
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g-----~-i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDG-----E-IRADRVVLAAGAW 202 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTE-----E-EEECEEEE--GGG
T ss_pred cccchhhhhHHHHHHhhhhccccccccchhhcc--ccccccccccc-----c-cccceeEeccccc
Confidence 456788888888888899999999999999987 6677 888775 5 9999999999998
No 151
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.04 E-value=5.5e-09 Score=101.53 Aligned_cols=137 Identities=21% Similarity=0.371 Sum_probs=84.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------CCCCCe----------eee-cCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------RAYDRM----------KLH-LAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~~~~----------~~~-~~~~ 57 (381)
++||+||||||+|+++|..|++.|++|+|||+.+......+. .....+ ... ....
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 479999999999999999999999999999998754221100 000000 000 0000
Q ss_pred ccccCCCCCC-CCCCC--CCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FCELPHMPFP-SRTPT--FVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
...+...+.. ..++. ...+..+.+++.+.+.+. ++++++++++.++..++ +.+.+++.+.. +..++++|+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~--g~~~i~ad~vV 178 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPD--GPYTLEADWVI 178 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCC--CcEEEEeCEEE
Confidence 0011100000 01111 145667778888877765 68899999999998765 44555554321 12479999999
Q ss_pred EccCCCCCCC
Q 035902 134 VATGENGLIP 143 (381)
Q Consensus 134 lAtG~~~~~~ 143 (381)
.|+|.++.+.
T Consensus 179 gADG~~S~vR 188 (547)
T PRK08132 179 ACDGARSPLR 188 (547)
T ss_pred ECCCCCcHHH
Confidence 9999885543
No 152
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.04 E-value=2.1e-09 Score=99.94 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=82.2
Q ss_pred EEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeee-----------ecCC--c----------------
Q 035902 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKL-----------HLAK--Q---------------- 57 (381)
Q Consensus 7 vIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~-----------~~~~--~---------------- 57 (381)
+|||||++|++||+.++++|.+|+|+|++..+|+.+....-..+.. ..+. .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 5999999999999999999999999999988776432111000000 0000 0
Q ss_pred ccccCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 58 FCELPHMPFP-----SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 58 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
++.-...++. ..++.......+.+.+.+.+++.++++++++.|.++..++ +.|.+.++ + ..+.+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~-~-----~~i~ad~V 152 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETS-G-----GEYEADKV 152 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEEC-C-----cEEEcCEE
Confidence 0000000000 0111222356788888888888899999999999997654 56666663 2 46899999
Q ss_pred EEccCCC
Q 035902 133 VVATGEN 139 (381)
Q Consensus 133 IlAtG~~ 139 (381)
|+|+|..
T Consensus 153 IlAtG~~ 159 (400)
T TIGR00275 153 ILATGGL 159 (400)
T ss_pred EECCCCc
Confidence 9999975
No 153
>PLN02661 Putative thiazole synthesis
Probab=99.03 E-value=1.9e-09 Score=95.83 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCC-CcCCCC-CCCeeeec-CCcccccCCCCCCCC--CCCCCCH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSAS-LWKKRA-YDRMKLHL-AKQFCELPHMPFPSR--TPTFVPR 76 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 76 (381)
++||+|||||++|++||+.|++. |.+|+|||++...|| .|.... +..+.... ...++.....++... +......
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 48999999999999999999986 899999999887765 554322 11111110 111111112222111 1111123
Q ss_pred HHHHHHHHHHH-HHhCCccccccEEEEEEEeCCCCeEEEEE------eecCC---CceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYV-SQMGINPRYHRSVESASYDENAKAWIIVA------KNTAL---DAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~------~~~~~---~~~~~~~~d~vIlAtG~~ 139 (381)
.++.+.+.+.+ ++.+++++.++.+.++..++ +....+.+ .++.. .+...+++++||+|||..
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 34445555444 45688999999999887754 22222332 12211 234579999999999965
No 154
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.03 E-value=5e-09 Score=97.58 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC---C---C-CcCCC-------------------CCCCeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS---A---S-LWKKR-------------------AYDRMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~---g---~-~~~~~-------------------~~~~~~~~~~~ 56 (381)
++||+||||||+|+++|+.|++.|++|+|+|+.+.. + . ..... ....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 589999999999999999999999999999998631 1 1 00000 01111111111
Q ss_pred cccccCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCE
Q 035902 57 QFCELPHMPFPSRT--P--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARY 131 (381)
Q Consensus 57 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~ 131 (381)
... ..+++... . ....+.++.+.+.+.+...+++++++++++++...+. ..-.|+.. ++ +..++++|+
T Consensus 82 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~~~V~~~~~G---~~~~i~ad~ 154 (392)
T PRK08243 82 RRH---RIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS-DRPYVTYEKDG---EEHRLDCDF 154 (392)
T ss_pred EEE---EeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-CceEEEEEcCC---eEEEEEeCE
Confidence 100 11111110 0 0123445555565555667889999999998875221 23335553 33 335799999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||.|.|....+..
T Consensus 155 vVgADG~~S~vR~ 167 (392)
T PRK08243 155 IAGCDGFHGVSRA 167 (392)
T ss_pred EEECCCCCCchhh
Confidence 9999999966554
No 155
>PRK05868 hypothetical protein; Validated
Probab=99.02 E-value=6.5e-09 Score=95.92 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=79.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC---Cc--CCC-------------------CCCCeeeecCCc--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS---LW--KKR-------------------AYDRMKLHLAKQ-- 57 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~---~~--~~~-------------------~~~~~~~~~~~~-- 57 (381)
+||+|||||++|+++|..|++.|++|+|||+.+.... .. ... ....+.......
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 5899999999999999999999999999998864421 00 000 011111111100
Q ss_pred ccccCCC-CCCCCCC--C-CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FCELPHM-PFPSRTP--T-FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
....... +....+. . ...+..+.+.+.+.. ..+++++++++|++++.++ +...+++.++ .++++|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~dg-----~~~~adlvI 153 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDG--DSVRVTFERA-----AAREFDLVI 153 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecC--CeEEEEECCC-----CeEEeCEEE
Confidence 0000000 0000000 0 112445555443322 3478899999999997654 5566777776 578999999
Q ss_pred EccCCCCCCCC
Q 035902 134 VATGENGLIPE 144 (381)
Q Consensus 134 lAtG~~~~~~~ 144 (381)
.|.|....+..
T Consensus 154 gADG~~S~vR~ 164 (372)
T PRK05868 154 GADGLHSNVRR 164 (372)
T ss_pred ECCCCCchHHH
Confidence 99999855543
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.02 E-value=4.2e-09 Score=74.10 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=65.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVD 84 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (381)
+|+|||||+.|+.+|..|++.|.+|+|+++++.+.. .-..++..+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 589999999999999999999999999999874320 11247788888
Q ss_pred HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec
Q 035902 85 NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT 119 (381)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 119 (381)
+.+++.|+++++++.+.++..+++ + ++|++++|
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~-~-~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGD-G-VEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETT-S-EEEEEETS
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCC-E-EEEEEecC
Confidence 889888999999999999998863 3 55777664
No 157
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.01 E-value=3.7e-09 Score=96.70 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...++...+.+.+.+.|..++++++|.++...++ +.+.+.+.++ +.. ++|+.||.|.|..
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g~~~~~~~~g---~~~-~~ak~Vin~AGl~ 210 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-GVFVLNTSNG---EET-LEAKFVINAAGLY 210 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-ceEEEEecCC---cEE-EEeeEEEECCchh
Confidence 3445666777777777999999999999999762 3566667666 222 9999999999987
No 158
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.01 E-value=7.8e-09 Score=101.37 Aligned_cols=142 Identities=22% Similarity=0.306 Sum_probs=84.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCC------CcCC------------------CCCCCeeeecCC-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSAS------LWKK------------------RAYDRMKLHLAK- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~------~~~~------------------~~~~~~~~~~~~- 56 (381)
++||+||||||+|+++|..|++. |++|+|||+.+.... .+.. .....+....+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 58999999999999999999995 999999998753211 0000 000011100000
Q ss_pred ----ccc---ccCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHhC--CccccccEEEEEEEeCCC-CeEEEEEeecC---C
Q 035902 57 ----QFC---ELPHMPFP-SRTP-TFVPRISFINYVDNYVSQMG--INPRYHRSVESASYDENA-KAWIIVAKNTA---L 121 (381)
Q Consensus 57 ----~~~---~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~~~~~~-~~~~v~~~~~~---~ 121 (381)
... ........ ..++ ...++..+.+.+.+.+.+.+ +.++++++++++..+++. ...++++.+.. .
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 000 00000000 0011 13456667788888777765 467889999999876421 23456665431 2
Q ss_pred CceEEEEeCEEEEccCCCCCCCC
Q 035902 122 DAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 122 ~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++++|+||.|.|.++.+.+
T Consensus 192 g~~~tv~A~~lVGaDGa~S~VR~ 214 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred CceEEEEeCEEEECCCCchHHHH
Confidence 33468999999999999955443
No 159
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.01 E-value=2.2e-10 Score=107.46 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=35.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeee---------cCCcccccC----CCC--CCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLH---------LAKQFCELP----HMP--FPSR 69 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~----~~~--~~~~ 69 (381)
||||||||++|++||+.+++.|.+|+|||+...+||............. ....+.... ..+ ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999999986544322111000 000000000 000 0000
Q ss_pred CC--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 70 TP--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 70 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+. .......+...+.+.+.+.|+++++++.+.++..++ +....|.+.+.. +..+++++.+|.|||-.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~~~--g~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVETKS--GRKEIRAKVFIDATGDG 149 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cccccccccccc--ccccccccccccccccc
Confidence 00 123344555666777777899999999999998865 233445555421 24789999999999954
No 160
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.00 E-value=8.3e-09 Score=95.67 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+.+.+++++.+++|+++..++ +.+.|.++++ .+++|.||+|+|.+
T Consensus 147 ~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g------~~~a~~vV~A~G~~ 203 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVTVTTADG------TYEAKKLVVSAGAW 203 (376)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEEEEeCCC------EEEeeEEEEecCcc
Confidence 334555556666667799999999999998865 4566766553 58999999999998
No 161
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.98 E-value=5.9e-09 Score=89.84 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=87.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC---CCC--------------------------cCCC-CCCC---
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS---ASL--------------------------WKKR-AYDR--- 49 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~---g~~--------------------------~~~~-~~~~--- 49 (381)
..+++|||||..|+++|++|+++|.++.++|+.+.+ |+. |+.. ...+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~ 86 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKL 86 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhceee
Confidence 378999999999999999999999999999987521 110 1100 0000
Q ss_pred ----eee--ecC------------------------Ccc-cccC-CCCCCCCCC-------CCCCHHHHHHHHHHHHHHh
Q 035902 50 ----MKL--HLA------------------------KQF-CELP-HMPFPSRTP-------TFVPRISFINYVDNYVSQM 90 (381)
Q Consensus 50 ----~~~--~~~------------------------~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 90 (381)
+.+ ..+ ... -.++ ..++++.+. +.......++.++..+++.
T Consensus 87 ~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~ 166 (399)
T KOG2820|consen 87 HCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAREL 166 (399)
T ss_pred cccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHc
Confidence 000 000 000 0112 233444333 3445667888899999999
Q ss_pred CCccccccEEEEEEEeCCCC-eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 91 GINPRYHRSVESASYDENAK-AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 91 ~~~~~~~~~v~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
|+.++.+.+|..+...++.+ ...|.+.++ ..+.++.+|+++|++
T Consensus 167 G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g-----s~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 167 GVIFRDGEKVKFIKFVDEEGNHVSVQTTDG-----SIYHAKKIIFTVGAW 211 (399)
T ss_pred CeEEecCcceeeEeeccCCCceeEEEeccC-----CeeecceEEEEecHH
Confidence 99999999999888654333 334667776 679999999999999
No 162
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.97 E-value=2.1e-08 Score=96.22 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+...+...+.+.|+.++.+++|+++..++ +.|.+.+.+...++...++++.||+|+|.+
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 343444555677799999999999998764 567787776333444679999999999998
No 163
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=1.9e-08 Score=96.58 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+...+...+.+.|..++.+++|.++..++ +.|.|.+.++. ++...++++.||.|+|.+
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~-g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDAD-GETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCC-CCEEEEEecEEEECCCcc
Confidence 3444455566777899999999999998765 56778777754 455679999999999998
No 164
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.96 E-value=1.4e-08 Score=94.42 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=78.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC------CC-CcCCC-------------------CCCCeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS------AS-LWKKR-------------------AYDRMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~------g~-~~~~~-------------------~~~~~~~~~~~ 56 (381)
.+||+|||||++|+++|..|++.|++|+|||+.+.. +. ....+ ....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 489999999999999999999999999999998741 11 10000 00111110000
Q ss_pred cccccCCCCCCCCC---CC-CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCE
Q 035902 57 QFCELPHMPFPSRT---PT-FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARY 131 (381)
Q Consensus 57 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~ 131 (381)
... ..++.... +. ......+.+.+.+.+...++.++++++++.+...+. ....|++. ++ +...+++|.
T Consensus 82 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~V~~~~~g---~~~~i~adl 154 (390)
T TIGR02360 82 QRF---RIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DRPYVTFERDG---ERHRLDCDF 154 (390)
T ss_pred EEE---EEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-CccEEEEEECC---eEEEEEeCE
Confidence 000 01111100 00 113445556666666666878888887776644221 22336664 43 224799999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||.|.|.+..+..
T Consensus 155 vIGADG~~S~VR~ 167 (390)
T TIGR02360 155 IAGCDGFHGVSRA 167 (390)
T ss_pred EEECCCCchhhHH
Confidence 9999999855443
No 165
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.96 E-value=1.6e-09 Score=76.18 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=40.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhh
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF 220 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~ 220 (381)
+++|||+|.+|+|+|..|++.|.+|+++.|++ .++|..+.+....+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~~~~~~~~~~~ 49 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFDPDAAKILEEY 49 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSSHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcCHHHHHHHHHH
Confidence 68999999999999999999999999999999 66666666555554333
No 166
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=6.8e-09 Score=96.70 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+.+.+.+.+++.|++++++++|.++...+ +.+.|.+.++ .+.+|.||+|+|.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~g------~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGVVVRTTQG------EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeEEEEECCC------EEEeCEEEECCCcch
Confidence 45667777777788899999999999988755 4566666542 699999999999983
No 167
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.94 E-value=1.3e-08 Score=95.02 Aligned_cols=138 Identities=18% Similarity=0.190 Sum_probs=84.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCC--------CCCCC----------eeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS------LWKK--------RAYDR----------MKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~------~~~~--------~~~~~----------~~~~~~~~~ 58 (381)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.... .+.. ..++. +........
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCc
Confidence 37899999999999999999999999999998864321 0100 00000 000000000
Q ss_pred ---cccCCCCCC-C--CCCC-CCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 59 ---CELPHMPFP-S--RTPT-FVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 59 ---~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
......... . ..+. ...+..+.+.|.+.+.+ .++.++++++|+++..++ +.+.+++.++. +.+.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~~--~~~~~~ad 157 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRTN--SVETVSAA 157 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeCC--CCcEEecC
Confidence 000000000 0 0011 23567788888777655 478899999999997654 45556654331 12568999
Q ss_pred EEEEccCCCCCCCC
Q 035902 131 YLVVATGENGLIPE 144 (381)
Q Consensus 131 ~vIlAtG~~~~~~~ 144 (381)
.||.|.|....+..
T Consensus 158 lvIgADG~~S~vR~ 171 (400)
T PRK06475 158 YLIACDGVWSMLRA 171 (400)
T ss_pred EEEECCCccHhHHh
Confidence 99999999955543
No 168
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.93 E-value=2.5e-09 Score=96.57 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=74.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEe-cCCCCCCCcCCCCCCCe---------------eeecCCc-ccccCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILE-REDCSASLWKKRAYDRM---------------KLHLAKQ-FCELPHMPFP 67 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie-~~~~~g~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~ 67 (381)
||+|||||+||+.||+.+++.|.+|+|+. +.+.++........... ....... ...+...+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 33433332211100000 0000000 0000000000
Q ss_pred C---CCC--CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 68 S---RTP--TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 68 ~---~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
. ... ....+..+.+++++.++. .++.+ ...+|.++..++ .....|.+.++ ..+.+|.||+|||++
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~-~~v~GV~~~~g-----~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVEN-GKVKGVVTKDG-----EEIEADAVVLATGTF 151 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECT-TEEEEEEETTS-----EEEEECEEEE-TTTG
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecC-CeEEEEEeCCC-----CEEecCEEEEecccc
Confidence 0 111 135677888888888876 56665 577899998865 34556777776 789999999999994
No 169
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.93 E-value=1.2e-08 Score=95.73 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=77.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCC------cCCC--------CCCCee---e--ecC--CcccccC
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASL------WKKR--------AYDRMK---L--HLA--KQFCELP 62 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~------~~~~--------~~~~~~---~--~~~--~~~~~~~ 62 (381)
+|+|||||++|+++|..|++.| ++|+|+|+.+..... +... ....+. . ... ..++.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999998754321 1100 000000 0 000 0000000
Q ss_pred --------CCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 63 --------HMPFPSRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 63 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
........+ ....+.++.+.+...+. ...++++++|.++..++ ..+.+.+.++ ..+++|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad~vV 152 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTDG-----TEYRCDLLI 152 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcCC-----CEEEeeEEE
Confidence 000000111 12346666666655443 34578899999998765 4577887776 579999999
Q ss_pred EccCCCCC
Q 035902 134 VATGENGL 141 (381)
Q Consensus 134 lAtG~~~~ 141 (381)
+|+|.+..
T Consensus 153 gADG~~S~ 160 (414)
T TIGR03219 153 GADGIKSA 160 (414)
T ss_pred ECCCccHH
Confidence 99999854
No 170
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.92 E-value=4.1e-08 Score=92.88 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=83.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcC--CC----CCCC------ee-----------------ee-
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWK--KR----AYDR------MK-----------------LH- 53 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~--~~----~~~~------~~-----------------~~- 53 (381)
||+|||||.+|++||+.++++| .+|+|+|+....+|.-. .. .... .. .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 99999999876654211 00 0000 00 00
Q ss_pred --------cC---CcccccCCCCC-------CC--CCC-------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEe
Q 035902 54 --------LA---KQFCELPHMPF-------PS--RTP-------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYD 106 (381)
Q Consensus 54 --------~~---~~~~~~~~~~~-------~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 106 (381)
.. ..++. ....+ .. ..+ .......+.+.+.+.+++.++++++++.++++..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 00 00111 00000 00 000 11234578888888888899999999999999875
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 107 ENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 107 ~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++.....+...+. .+....+.++.||+|+|....
T Consensus 160 ~~g~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 160 DQGTVVGVVVKGK-GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCcEEEEEEEeC-CCeEEEEecceEEEecCCCCC
Confidence 4333333444432 122346789999999998743
No 171
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.92 E-value=3.2e-08 Score=94.37 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=81.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC--CCCC--cCCC---CCCCe---e--eecCCc------------
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC--SASL--WKKR---AYDRM---K--LHLAKQ------------ 57 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~--~g~~--~~~~---~~~~~---~--~~~~~~------------ 57 (381)
.++||+|||+|++|++||+.+++.|.+|+|||+... .||. +... ..... . ......
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 469999999999999999999999999999999863 3441 1110 00000 0 000000
Q ss_pred ------------------ccccCCCCCCCCC------C--C---CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 58 ------------------FCELPHMPFPSRT------P--T---FVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 58 ------------------~~~~~~~~~~~~~------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
++.-...++.... . . ......+...+.+.+++.++++++++.++++..++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~- 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD- 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-
Confidence 0000000110000 0 0 00134677777788888899999999999998754
Q ss_pred CCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 109 AKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 109 ~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+...+ ..++...++++.||+|||..
T Consensus 162 g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 162 GRFVGARAGS-AAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred CeEEEEEEEc-cCCceEEEECCEEEECCCCC
Confidence 2333344421 11233578999999999976
No 172
>PRK06996 hypothetical protein; Provisional
Probab=98.91 E-value=2e-08 Score=93.77 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=82.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC----CCeEEEecCCCCCC---------------------CcCCCC--CCCeeeecC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS----VPNIILEREDCSAS---------------------LWKKRA--YDRMKLHLA 55 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g----~~v~lie~~~~~g~---------------------~~~~~~--~~~~~~~~~ 55 (381)
++||+||||||+|+++|..|++.| ++|+|+|+.+.... .|.... +..+.....
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 489999999999999999999987 47999998742110 111100 111111100
Q ss_pred Ccc----cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCE
Q 035902 56 KQF----CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 56 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 131 (381)
... +....+..+. ..-...+..+.+.|.+.+...++.++++++++++..+. ..+++++.++. +.+++++|+
T Consensus 91 ~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~~--g~~~i~a~l 165 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTPQ--GARTLRARI 165 (398)
T ss_pred CCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCCC--cceEEeeeE
Confidence 000 0001111100 01124567888888888888888899999999887654 55667665431 125799999
Q ss_pred EEEccCC
Q 035902 132 LVVATGE 138 (381)
Q Consensus 132 vIlAtG~ 138 (381)
||.|+|.
T Consensus 166 vIgADG~ 172 (398)
T PRK06996 166 AVQAEGG 172 (398)
T ss_pred EEECCCC
Confidence 9999995
No 173
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.90 E-value=2.8e-08 Score=93.50 Aligned_cols=136 Identities=21% Similarity=0.333 Sum_probs=81.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCC----ee----e-ecCCc----------------
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDR----MK----L-HLAKQ---------------- 57 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~----~~----~-~~~~~---------------- 57 (381)
||+|||+|.||++||+.++++|.+|+|+|+....++. |....+.. .. . +....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999876652 11100000 00 0 00000
Q ss_pred --------------ccccCCCCCCC----------------C------CC-----CCCCHHHHHHHHHHHHHHhCCcccc
Q 035902 58 --------------FCELPHMPFPS----------------R------TP-----TFVPRISFINYVDNYVSQMGINPRY 96 (381)
Q Consensus 58 --------------~~~~~~~~~~~----------------~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (381)
++.-...++.. . .. .......+...+.+.+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~ 160 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence 00000000000 0 00 0124567888888889999999999
Q ss_pred ccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 97 HRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 97 ~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++.++++..++ ...-.+...+...++...++++.||+|||....
T Consensus 161 ~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 161 NTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp SEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 99999998875 233335555444456678999999999998854
No 174
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.90 E-value=6.6e-08 Score=92.77 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCC----Cee-----eecCCc--------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYD----RMK-----LHLAKQ-------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~----~~~-----~~~~~~-------------- 57 (381)
++||||||+|.+|++||+.+++.|.+|+|+|+....||. +....+. ... .+....
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 489999999999999999999999999999999877652 1110000 000 000000
Q ss_pred ----------------ccccCCCCC-----CC-------CCC--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 58 ----------------FCELPHMPF-----PS-------RTP--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 58 ----------------~~~~~~~~~-----~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
|+.-...++ +. ..+ .......+...+.+.+++.++++++++.++++..++
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 220 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD 220 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC
Confidence 000000000 00 000 011234567777777888899999999999997643
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+..... .++...+.++.||+|+|..
T Consensus 221 -g~V~Gv~~~~~-~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 221 -GKVTGVKVKIN-GKETKTISSKAVVVTTGGF 250 (506)
T ss_pred -CEEEEEEEEeC-CCeEEEEecCeEEEeCCCc
Confidence 22222333321 1223579999999999976
No 175
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.89 E-value=2.7e-08 Score=92.43 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+.+.+.+.++..+++++.+++|+++..++ +.+.|.+.+ ..+.+|+||+|+|.+
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~------~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTK------GSYQANKLVVTAGAW 199 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCcc
Confidence 344666777777777899999999999998754 556666544 368999999999987
No 176
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=5e-08 Score=91.56 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+...+.+.+.+.|++++.+++|+++..++ +.+.+.+.++...+...+++|.||+|+|.+
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 3455566677778899999999999998755 556665544311112368999999999998
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.89 E-value=4.2e-08 Score=93.57 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=78.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||++|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~l 227 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKEV 227 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999886321 10 124566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++.++.+.++.....++...+...++ +.+.+.+|.||+|+|..|+...
T Consensus 228 ~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g---~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 228 ARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNG---EEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred HHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCC---ceEEEEeCEEEEeeCCccCCCC
Confidence 777888899999999999997521123322333333 2357999999999999987654
No 178
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.88 E-value=5.2e-08 Score=88.72 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=79.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC--CCcCCCCCCCeeee-c-CCc-----------------------
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA--SLWKKRAYDRMKLH-L-AKQ----------------------- 57 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g--~~~~~~~~~~~~~~-~-~~~----------------------- 57 (381)
||+|||+|.||+++|+.|.+. ++|+|+.|.+.-. +.|.+.-....... . +..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999988 9999999986432 24444211110000 0 000
Q ss_pred -------ccccCCCCCCCCCC-------------------CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCC
Q 035902 58 -------FCELPHMPFPSRTP-------------------TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAK 110 (381)
Q Consensus 58 -------~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~ 110 (381)
+.--...+|..+.. .-.++.++...|...++. .+++++-+..+.++-.+++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 00001111111110 114566788888777764 788888888887776665211
Q ss_pred eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 111 AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 111 ~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.--+.+.+... +...+.++.||+|||..
T Consensus 168 ~~Gv~~~~~~~-~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 168 VAGVLVLNRNG-ELGTFRAKAVVLATGGL 195 (518)
T ss_pred EeEEEEecCCC-eEEEEecCeEEEecCCC
Confidence 11244433211 34679999999999976
No 179
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.87 E-value=2.8e-08 Score=92.06 Aligned_cols=100 Identities=10% Similarity=0.126 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +.. ...++...+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------~~~-~~~~~~~~l 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------ASL-MPPEVSSRL 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------------------------chh-CCHHHHHHH
Confidence 579999999999999999999999999999876321 000 113556677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
++.+++.++++++++.+.++..+. +.+.+.+.++ .++.+|.||+|+|..|+.
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSG-----RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcCC-----cEEECCEEEECcCCCcch
Confidence 777888899999999999988654 4566777665 679999999999999764
No 180
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.86 E-value=2.2e-08 Score=92.00 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=79.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC--CcCCCCC--CCeeeecCCcc--cccCCCC--CC---CC--
Q 035902 5 PVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS--LWKKRAY--DRMKLHLAKQF--CELPHMP--FP---SR-- 69 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~--~~~~~~~--~~~~~~~~~~~--~~~~~~~--~~---~~-- 69 (381)
||+|||||+||+++|..|++. |++|+++|+.+..++ +|..... ........... ..++... .+ ..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887766 3422110 00000000000 0011000 00 00
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 70 -TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.-....+..+.+++.+.+. ..+.++++|.+++ . +. |++.++ .+++++.||.|.|..+..+...+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~---~~i~~~~~V~~v~--~--~~--v~l~dg-----~~~~A~~VI~A~G~~s~~~~~~~~ 146 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFP---EGVILGRKAVGLD--A--DG--VDLAPG-----TRINARSVIDCRGFKPSAHLKGGF 146 (370)
T ss_pred CCceEEEHHHHHHHHHHhhc---ccEEecCEEEEEe--C--CE--EEECCC-----CEEEeeEEEECCCCCCCcccccee
Confidence 0113345666666654332 2366788888873 2 33 455555 689999999999988543333455
Q ss_pred CCCCccee
Q 035902 149 GSFEGEYM 156 (381)
Q Consensus 149 ~~~~~~~~ 156 (381)
..+.|...
T Consensus 147 Q~f~G~~~ 154 (370)
T TIGR01789 147 QVFLGREM 154 (370)
T ss_pred eEEEEEEE
Confidence 44444333
No 181
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.86 E-value=5.1e-08 Score=94.29 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+...+.+.|++++.+++|+++..++ ++.+.|.+.+...++...++++.||+|+|.+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 34455555566777899999999999998764 2333466554333334579999999999998
No 182
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.85 E-value=7.9e-08 Score=91.60 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=79.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~~ 217 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKVV 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHHH
Confidence 689999999999999999999999999999886321 00 113566677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++++++|.+++.++ +...+...++ +...+.+|.||+|+|..|+..
T Consensus 218 ~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g---~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 218 AKALKKKGVKILTNTKVTAVEKND--DQVVYENKGG---ETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCC---cEEEEEeCEEEEecCCcccCC
Confidence 777888899999999999998754 4444554433 225799999999999998766
No 183
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.84 E-value=5.3e-08 Score=90.66 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=85.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+..|..+++.|.+|||+|+.+.+- + ...+++.+.+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------p--~~D~ei~~~~ 220 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------P--GEDPEISKEL 220 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------C--cCCHHHHHHH
Confidence 679999999999999999999999999999987432 0 1135888888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
...+++.++.+++++++..+...+ +...+.++++.. ..+++|.|++|+|-.|+...+
T Consensus 221 ~~~l~~~gv~i~~~~~v~~~~~~~--~~v~v~~~~g~~---~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 221 TKQLEKGGVKILLNTKVTAVEKKD--DGVLVTLEDGEG---GTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred HHHHHhCCeEEEccceEEEEEecC--CeEEEEEecCCC---CEEEeeEEEEccCCccCCCCC
Confidence 888888788999999999998765 335577777622 278999999999999998765
No 184
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.83 E-value=5.8e-09 Score=70.41 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=40.0
Q ss_pred EECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCC
Q 035902 8 IVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAK 56 (381)
Q Consensus 8 IIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~ 56 (381)
|||||++|+++|+.|++.|.+|+|+|+++.+||.+.....+....+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~ 49 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA 49 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence 8999999999999999999999999999999997766545555444443
No 185
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=6.4e-08 Score=94.32 Aligned_cols=138 Identities=18% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCC--CcCCCC----CCCee-eecCCcc-------------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSAS--LWKKRA----YDRMK-LHLAKQF------------- 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~--~~~~~~----~~~~~-~~~~~~~------------- 58 (381)
|.++||+|||||.||++||+.+++.| .+|+|+|+....++ .+.... ..... .+....+
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d 80 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLAD 80 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCC
Confidence 77799999999999999999999874 79999999875443 111110 00000 0000000
Q ss_pred -----------------cccCCCCCCCC-------------------CCCCCCHHHHHHHHHHHHHHhCCccccccEEEE
Q 035902 59 -----------------CELPHMPFPSR-------------------TPTFVPRISFINYVDNYVSQMGINPRYHRSVES 102 (381)
Q Consensus 59 -----------------~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 102 (381)
..-...+++.. .+.-.+...+...+.+.+++.++++..++.+++
T Consensus 81 ~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~ 160 (575)
T PRK05945 81 QDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEE
Confidence 00000111100 001123456777777777778999999999999
Q ss_pred EEEeCCCCe-EEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 103 ASYDENAKA-WIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 103 i~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+..++ +. .-+..-+...++...+.++.||+|||...
T Consensus 161 L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 161 LILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred EEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 87654 32 11222121122335689999999999984
No 186
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.81 E-value=1e-07 Score=90.80 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 219 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKLA 219 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHHH
Confidence 679999999999999999999999999999876321 10 124666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.+++++++++|.++..++ +.+.+.+.++ ++.+.+.+|.||+|+|..|+...
T Consensus 220 ~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~g--g~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 220 ERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDG--GKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeC--CeeEEEEeCEEEEeeCCccCCCC
Confidence 778888899999999999998764 4455555443 23357999999999999987654
No 187
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.79 E-value=9.1e-08 Score=90.47 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=77.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..+++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~~ 204 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAALA 204 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHHH
Confidence 679999999999999999999999999999976321 10 123566677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.++++++++.+.+++.++ +...+.. ++ .++.+|.||+|+|..|+...
T Consensus 205 ~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~-~g-----~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 205 KQYMEEDGITFLLNAHTTEVKNDG--DQVLVVT-ED-----ETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred HHHHHHcCCEEEcCCEEEEEEecC--CEEEEEE-CC-----eEEEcCEEEEeeCCCCCccc
Confidence 777888899999999999998643 4433432 33 57999999999999988653
No 188
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.79 E-value=1.8e-07 Score=88.38 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHHHHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+.+.+.+.+. ..+++++++++|+++.... ++.|++...+...++...+++|+||+|+|.+
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGaw 246 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGG 246 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcc
Confidence 44555555554 3478999999999998762 2568876532211122368999999999998
No 189
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.78 E-value=3.8e-08 Score=97.70 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+.+ +++++++++|+++...+ +.|.|.+.++ ..+++|.||+|+|.+
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~g-----~~~~ad~VV~A~G~~ 462 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAGG-----TLASAPVVVLANGHD 462 (662)
T ss_pred CHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECCC-----cEEECCEEEECCCCC
Confidence 344566666666666 88999999999998765 5677776654 567899999999998
No 190
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.78 E-value=6.2e-08 Score=90.29 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=77.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+ .....++.+++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------~~~~~~~~~~l 192 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG--------------------------------RNAPPPVQRYL 192 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh--------------------------------hhcCHHHHHHH
Confidence 5799999999999999999999999999998763311 00123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.++++++++.+.++.. + +...+.+.++ +.+.+|.||+|+|..|+.
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g-----~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSG-----ETLQADVVIYGIGISAND 243 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCC-----CEEECCEEEECCCCChhh
Confidence 7777888999999999998865 2 3445666665 579999999999999764
No 191
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=2.7e-07 Score=89.99 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
|+.+||+|||+|.||++||+.+++.|.+|+|+|+....+
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 778999999999999999999999999999999876544
No 192
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=1.7e-07 Score=91.32 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=82.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCe----eeecCCc-------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRM----KLHLAKQ------------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~----~~~~~~~------------------- 57 (381)
++||+|||+|.||++||..+++.|.+|+|+|+....+|. +....+... ..+.+..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 479999999999999999999999999999998654431 111000000 0000000
Q ss_pred -----------ccccCCCCCCCC---------CCCC-----------------CCHHHHHHHHHHHHHHhCCccccccEE
Q 035902 58 -----------FCELPHMPFPSR---------TPTF-----------------VPRISFINYVDNYVSQMGINPRYHRSV 100 (381)
Q Consensus 58 -----------~~~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (381)
+..-...++... +... .....+...+.+.+.+.+++++.++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 000001111100 0000 134567777777777788999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 101 ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 101 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+++-.+++....-+...+...++...+.++.||+|||...
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred EEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 9987653222222333232233456789999999999884
No 193
>PRK07121 hypothetical protein; Validated
Probab=98.77 E-value=3.4e-07 Score=87.85 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe-CEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA-RYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~-d~vIlAtG~~~ 140 (381)
...+.+.+.+.+++.++++++++.++++..+++.....|...+. ++...+++ +.||+|||...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~--~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRY--GETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeC--CcEEEEEeCCEEEECCCCcC
Confidence 45677778888888899999999999998764323333444432 23457889 99999999874
No 194
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.77 E-value=1.8e-07 Score=91.70 Aligned_cols=65 Identities=14% Similarity=-0.021 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeC-CCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDE-NAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+...+.+.|+.++.+++|+++..++ ++..+.|.+.+...++...+++|.||+|+|.+
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 344556666677788899999999999988753 23344455544333333478999999999998
No 195
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.76 E-value=9.4e-08 Score=90.81 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCe--eeecCC------------------------
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRM--KLHLAK------------------------ 56 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~--~~~~~~------------------------ 56 (381)
+||+|||||.||++||..+++.|.+|+|+|+....+..+ ....+... ..+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 799999999999999999999999999999975332211 11000000 000000
Q ss_pred ------cccccCCCCCCC-------CCCC-----CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEe
Q 035902 57 ------QFCELPHMPFPS-------RTPT-----FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAK 117 (381)
Q Consensus 57 ------~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~ 117 (381)
.++.-...++.. .++. -.....+.+.+.+.+++.++++... .+..+..++ +.+. +..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~- 157 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL- 157 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE-
Confidence 000000111110 0111 1134567888888888888887654 677776543 3332 333
Q ss_pred ecCCCceEEEEeCEEEEccCCCCC
Q 035902 118 NTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 118 ~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++ ..+.++.||+|||....
T Consensus 158 ~g-----~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 DG-----ELLKFDATVIATGGFSG 176 (466)
T ss_pred CC-----EEEEeCeEEECCCcCcC
Confidence 33 56899999999999854
No 196
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.76 E-value=1.7e-07 Score=87.80 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+.+.|..+...++|+++..++ +.|.|...+...++...++++.||.|||.+
T Consensus 169 ~~a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 169 ANARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPW 224 (532)
T ss_pred HHHHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCcc
Confidence 33444566688888899999999887 478899998877888899999999999998
No 197
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.76 E-value=1.8e-07 Score=90.44 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=82.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCee--eecC-----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRMK--LHLA----------------------- 55 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~~--~~~~----------------------- 55 (381)
++||+|||+|.||++||..+++.|.+|+|+|+....+|. +....+.... .+.+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 589999999999999999999999999999998765431 1110000000 0000
Q ss_pred -------CcccccCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 56 -------KQFCELPHMPFPSR--------------TP------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 56 -------~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
..+..-...++... .. .-.+...+.+.|.+.+++.+++++.++.+.++..+++
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~ 175 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGT 175 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC
Confidence 00000001111100 00 0113567888888888888899999999999976542
Q ss_pred CCeEEEEEee---cCCCceEEEEeCEEEEccCCCC
Q 035902 109 AKAWIIVAKN---TALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 109 ~~~~~v~~~~---~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.....+...+ +...+...+.++.||+|||...
T Consensus 176 g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 176 GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 2222233331 1112235789999999999874
No 198
>PLN02985 squalene monooxygenase
Probab=98.76 E-value=2.6e-07 Score=88.50 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=77.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC----CCcCCC---------------------CCCCeeeecCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA----SLWKKR---------------------AYDRMKLHLAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g----~~~~~~---------------------~~~~~~~~~~~~ 57 (381)
.+||+|||||++|+++|..|++.|.+|+|+|+....+ +.+... ....+.......
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 4899999999999999999999999999999874221 111110 011111100000
Q ss_pred c--cccCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCE
Q 035902 58 F--CELPHMP--FPSRT-PTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 58 ~--~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 131 (381)
. ..++... ++... .....+..+.+.+.+.+.+. ++++..+ ++.++..++ +..-.|+..+. .++..++.+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~~-dG~~~~~~AdL 199 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKNS-AGEETTALAPL 199 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEcC-CCCEEEEECCE
Confidence 0 0111000 00000 01234567888887777654 5776544 566665443 12112444321 22345678999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||.|+|.......
T Consensus 200 VVgADG~~S~vR~ 212 (514)
T PLN02985 200 TVVCDGCYSNLRR 212 (514)
T ss_pred EEECCCCchHHHH
Confidence 9999999965543
No 199
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.76 E-value=1.2e-07 Score=90.36 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=80.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+. + ....++...+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~l 222 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------S--FLDDEISDAL 222 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------C--cCCHHHHHHH
Confidence 689999999999999999999999999999876331 0 0124566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.++.+.++...+ +.+.+.+.++ ..+.+|.||+|+|..|+...
T Consensus 223 ~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 223 SYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKSG-----KKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred HHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECCC-----CEEEeCEEEEeecCCccccC
Confidence 777888899999999999998654 4455665554 47999999999999987653
No 200
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.75 E-value=2.3e-07 Score=90.82 Aligned_cols=137 Identities=18% Similarity=0.103 Sum_probs=82.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCe----eeecCCc-------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRM----KLHLAKQ------------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~----~~~~~~~------------------- 57 (381)
++||+|||||.||++||+++++.|.+|+|+||....++. +....+... ..+.+..
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 479999999999999999999999999999998755441 111111000 0000000
Q ss_pred -----------ccccCCCCCCCC---------CCC------------------CCCHHHHHHHHHHHHHHhCCccccccE
Q 035902 58 -----------FCELPHMPFPSR---------TPT------------------FVPRISFINYVDNYVSQMGINPRYHRS 99 (381)
Q Consensus 58 -----------~~~~~~~~~~~~---------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
++.-...++... +.. -.+...+...+.+.+.+.+++++.++.
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 188 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYF 188 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceE
Confidence 000000111000 000 013457777888878788999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 100 VESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 100 v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++++..+++....-+...+...++...+.++.||+|||..
T Consensus 189 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 189 ALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred EEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 9997763222222233323223345678999999999987
No 201
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.75 E-value=2.1e-07 Score=88.50 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=79.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..+++.|.+|+|+|+.+.+. +. ...++.+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~l 221 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKTL 221 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHHH
Confidence 689999999999999999999999999999876321 11 113566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++.+.++...+ +...+...+...++.+.+.+|.||+|+|..|+..
T Consensus 222 ~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 222 QKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred HHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 778888899999999999997653 3344444322112336799999999999998764
No 202
>PRK06116 glutathione reductase; Validated
Probab=98.75 E-value=1.4e-07 Score=89.56 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=80.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 214 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------RG--FDPDIRETL 214 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 00 123666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++++++|.++..++ ++.+.+.+.++ ..+.+|.||+|+|..|+...
T Consensus 215 ~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~g-----~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 215 VEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLEDG-----ETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred HHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcCC-----cEEEeCEEEEeeCCCcCCCC
Confidence 778888899999999999998754 23355666555 57999999999999987653
No 203
>PRK08275 putative oxidoreductase; Provisional
Probab=98.75 E-value=1.1e-07 Score=92.30 Aligned_cols=139 Identities=10% Similarity=0.124 Sum_probs=81.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcC--CCCCCC-ee--eecCCcc----------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWK--KRAYDR-MK--LHLAKQF---------------- 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~--~~~~~~-~~--~~~~~~~---------------- 58 (381)
++||+|||||.||++||+.+++. |.+|+|+|+....++ ... ...... +. .+.+..+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 38999999999999999999987 689999999875322 210 000000 00 0000000
Q ss_pred --------------cccCCCCCCCC------------CC----CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 59 --------------CELPHMPFPSR------------TP----TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 59 --------------~~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
+.....++... .. .......+.+.+.+.+++.++++..++.+.++..+++
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~ 168 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDAD 168 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC
Confidence 00000111000 00 0113456778888888888999999999999976522
Q ss_pred CCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 109 AKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 109 ~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.....+...+...++...+.++.||+|||....
T Consensus 169 g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 169 GRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 222223332222233457899999999999853
No 204
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.73 E-value=2.6e-07 Score=90.43 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcCCC--CCC-Ceee-ecCCcc-----------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWKKR--AYD-RMKL-HLAKQF----------------- 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~~~--~~~-~~~~-~~~~~~----------------- 58 (381)
++||+|||||.||++||+.+++. |.+|+|||+....++ .+... ... .+.. +.+..+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 48999999999999999999998 999999999864332 11111 000 0000 000000
Q ss_pred -------------cccCCCCCCCCC----------CCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEE
Q 035902 59 -------------CELPHMPFPSRT----------PTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWII 114 (381)
Q Consensus 59 -------------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v 114 (381)
+.....++.... ........+.+.+.+.+++.+ ++++.++.+.++..++ +....+
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv 169 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGA 169 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEE
Confidence 000011110000 001234456666666666654 9999999999987654 222223
Q ss_pred EEeecCCCceEEEEeCEEEEccCCC
Q 035902 115 VAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 115 ~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...++...+.++.||+|||..
T Consensus 170 ~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 170 VGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred EEEEccCCcEEEEECCEEEECCCch
Confidence 2222112234578999999999987
No 205
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=2.7e-07 Score=87.96 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=79.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +.+ ..++...+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--d~~~~~~l 219 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PNE--DAEVSKEI 219 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Ccc--CHHHHHHH
Confidence 579999999999999999999999999999875321 111 23566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++.|.++..++ +...+.+.+ ..++...+.+|.||+|+|..|+..
T Consensus 220 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 220 AKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSK-KDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred HHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEe-cCCCeEEEEeCEEEECcCcccCCC
Confidence 778888899999999999997654 444455441 112235799999999999998765
No 206
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=4e-07 Score=88.47 Aligned_cols=136 Identities=16% Similarity=0.097 Sum_probs=81.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCC-e-----eeecCC------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDR-M-----KLHLAK------------------ 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~-~-----~~~~~~------------------ 56 (381)
++||+|||+|.||++||..+++.|.+|+|+||....++. +....+.. + ..+...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 489999999999999999999999999999998644331 11100000 0 000000
Q ss_pred ------------cccccCCCCCCCC--------------CCC-----CCCHHHHHHHHHHHHHHhCCccccccEEEEEEE
Q 035902 57 ------------QFCELPHMPFPSR--------------TPT-----FVPRISFINYVDNYVSQMGINPRYHRSVESASY 105 (381)
Q Consensus 57 ------------~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 105 (381)
.++.....++... .+. -.+...+.+.+.+.+.+.++++..++.++++..
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~ 164 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVT 164 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEE
Confidence 0000011111100 000 013456677777767667899999999999887
Q ss_pred eCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 106 DENAKAW-IIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 106 ~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++ +.. -+...+...++...+.++.||+|||...
T Consensus 165 ~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 165 DN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 54 432 2444443333446789999999999874
No 207
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.73 E-value=2.3e-07 Score=88.46 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=80.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 213 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAAV 213 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
++.+++.+++++++++|..+..++ +...+.+... ++.+++.+|.||+|+|..|+...+
T Consensus 214 ~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~~--~~~~~i~~D~ViiA~G~~p~~~~l 271 (463)
T TIGR02053 214 EEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEKP--GGQGEVEADELLVATGRRPNTDGL 271 (463)
T ss_pred HHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEeC--CCceEEEeCEEEEeECCCcCCCCC
Confidence 777888899999999999997654 3444554431 112679999999999999876643
No 208
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=3.1e-07 Score=90.31 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
++||+|||||.||++||..+++.|.+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 479999999999999999999999999999986544
No 209
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.72 E-value=2.4e-07 Score=88.08 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++++++|+++..++ ++.|.+.+.+...++...+++|+||+|+|.+
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 34566666666777799999999999998754 2457776544322333468999999999988
No 210
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.72 E-value=1.4e-07 Score=89.45 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHH----hC--CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQ----MG--INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~----~~--~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++ .| +.++++++|+++...+ ++.|.|.+.++ .+++|+||+|+|.+
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G------~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG------EIRARFVVVSACGY 272 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC------EEEeCEEEECcChh
Confidence 344566666666766 66 6788999999998763 35677877654 59999999999988
No 211
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.72 E-value=2.5e-07 Score=87.87 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=77.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..+.+.|.+|+++++.+.+. +. ...++.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~l 217 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHIL 217 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHHH
Confidence 679999999999999999999999999999876321 10 124667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.+..++.++ ....+.. ++ +...+.+|.||+|+|..|+...
T Consensus 218 ~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~-~g---~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 218 REKLENDGVKIFTGAALKGLNSYK--KQALFEY-EG---SIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred HHHHHHCCCEEEECCEEEEEEEcC--CEEEEEE-CC---ceEEEEeCEEEEecCCccCCCC
Confidence 778888899999999999987654 3333322 22 2247999999999999987653
No 212
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.72 E-value=1.9e-07 Score=88.46 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=79.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..+++.|.+|+++++.+.+. +. ...++...+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 213 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRALL 213 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHHH
Confidence 579999999999999999999999999999876321 11 123566677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++.++.+.++..++ +...+.+.++ ..+.+|.||+|+|..|+..
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSHG-----EEIVADVVLFATGRSPNTK 266 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcCC-----cEeecCEEEEeeCCCcCCC
Confidence 777888899999999999997654 3455665554 5799999999999998764
No 213
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.71 E-value=1.3e-07 Score=89.91 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++.++.|++++. . +.+.|.+.++ .+++|.||+|+|.+
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~g------~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPDG------QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCCc------EEECCEEEEccccc
Confidence 345556666777788999999999999874 2 3456766553 58999999999987
No 214
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=5.2e-07 Score=88.11 Aligned_cols=138 Identities=17% Similarity=0.071 Sum_probs=81.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCC----CeeeecCCcc------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYD----RMKLHLAKQF------------------ 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~----~~~~~~~~~~------------------ 58 (381)
++||+|||+|.||++||+.+++.|.+|+|||+....++. +...... ....+....+
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 379999999999999999999999999999997543331 1110000 0000000000
Q ss_pred ------------cccCCCCCCC---------CCCC-----------------CCCHHHHHHHHHHHHHHhCCccccccEE
Q 035902 59 ------------CELPHMPFPS---------RTPT-----------------FVPRISFINYVDNYVSQMGINPRYHRSV 100 (381)
Q Consensus 59 ------------~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (381)
..-...++.. .+.. -.+...+.+.|.+.+.+.+++++.++.+
T Consensus 92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~~~ 171 (591)
T PRK07057 92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMA 171 (591)
T ss_pred HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 0000001100 0000 0134567777777777789999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 101 ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 101 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+++..++++....+...+...++...+.++.||+|||...
T Consensus 172 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 172 LDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred EEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 8887653222233444332223445789999999999873
No 215
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.71 E-value=2.5e-07 Score=86.68 Aligned_cols=57 Identities=9% Similarity=-0.069 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+...+.+.+.+.|++++.+++|.++...++...+.|.+.++ .+.+++||+|+|.+
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g------~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG------FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc------eEECCEEEECCChh
Confidence 3445555667777899999999999997643233344666553 58999999999987
No 216
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=3.8e-07 Score=87.04 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=80.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~~ 230 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKEA 230 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999876321 10 124666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.++.|..++.++ +...+...++ .++...+.+|.|++|+|..|+...
T Consensus 231 ~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~~-~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 231 AKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTDA-DGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred HHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEeC-CCceeEEEcCEEEEccCCccCCCC
Confidence 777777899999999999998654 3444554442 123357999999999999988663
No 217
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=4.9e-07 Score=88.39 Aligned_cols=138 Identities=17% Similarity=0.096 Sum_probs=81.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCC----CeeeecCC--------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYD----RMKLHLAK-------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~----~~~~~~~~-------------------- 56 (381)
++||+|||||.||++||+++++.|.+|+|+||....++. +...... ....+...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 91 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE 91 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 379999999999999999999999999999998644331 1110000 00000000
Q ss_pred ----------cccccCCCCCCC---------CCCC------------------CCCHHHHHHHHHHHHHHhCCccccccE
Q 035902 57 ----------QFCELPHMPFPS---------RTPT------------------FVPRISFINYVDNYVSQMGINPRYHRS 99 (381)
Q Consensus 57 ----------~~~~~~~~~~~~---------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
.+..-...++.. .+.. -.....+...|.+.+.+.++++..++.
T Consensus 92 ~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~~ 171 (598)
T PRK09078 92 YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYF 171 (598)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeEE
Confidence 000000011100 0000 013456777777777778999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 100 VESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 100 v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++++..+++....-+...+...++...+.++.||+|||...
T Consensus 172 v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 172 ALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred EEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 99987653222222333232233456889999999999873
No 218
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.70 E-value=5.6e-06 Score=76.05 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+||+|||||++|+++|+.+.+.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
No 219
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.69 E-value=1.5e-07 Score=85.49 Aligned_cols=60 Identities=15% Similarity=0.314 Sum_probs=47.7
Q ss_pred HHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 79 FINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+.+.+-+.+.+ .++.++++++|.++.+.. ++.|.|.+.+...++...+++++|+|..|..
T Consensus 183 LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 183 LTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGRWEVKVKDLKTGEKREVRAKFVFVGAGGG 243 (488)
T ss_pred HHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCCEEEEEEecCCCCeEEEECCEEEECCchH
Confidence 34444444444 488999999999999875 5779999987766677899999999999987
No 220
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.69 E-value=3.1e-08 Score=93.36 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 74 VPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
..+..+.++|.+.+.+.|++++.+ .|.++..++++....|++.++ +++++|++|.|||......
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g-----~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDG-----RTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTS-----EEEEESEEEE-SGGG-CCC
T ss_pred EeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCC-----CEEEEeEEEECCCccchhh
Confidence 457789999999999999998665 588887776322234666665 7899999999999885443
No 221
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.69 E-value=3.3e-07 Score=87.99 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCe--eeecCCc-------------------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRM--KLHLAKQ------------------- 57 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~--~~~~~~~------------------- 57 (381)
|.++||+|||+|.||++||..+++ |.+|+|+|+....++. |....+... ..+.+..
T Consensus 1 ~~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 79 (510)
T PRK08071 1 MPSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVR 79 (510)
T ss_pred CCccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHH
Confidence 567899999999999999999976 8999999998755441 111100000 0000000
Q ss_pred -----------ccccCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEe
Q 035902 58 -----------FCELPHMPFPSR--------------TP------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYD 106 (381)
Q Consensus 58 -----------~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 106 (381)
+..-...++... .+ .......+.+.+.+.++ .+++++.++.++++..+
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~ 158 (510)
T PRK08071 80 YLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeec
Confidence 000001111100 00 01124456666666555 48899999999988654
Q ss_pred CCCCeE-EEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 107 ENAKAW-IIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 107 ~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+ +.+ .+...+. .++...+.++.||+|||....
T Consensus 159 ~--g~v~Gv~~~~~-~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 N--GRCIGVLTKDS-EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred C--CEEEEEEEEEC-CCcEEEEEcCeEEEecCCCcc
Confidence 3 332 2444332 234457899999999999743
No 222
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.69 E-value=6.6e-07 Score=87.73 Aligned_cols=138 Identities=16% Similarity=0.087 Sum_probs=82.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCC----eeeecCCc-------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDR----MKLHLAKQ------------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~----~~~~~~~~------------------- 57 (381)
++||+|||+|.||++||+++++.|.+|+|+||....++. +....+.. ...+....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 379999999999999999999999999999998754431 11110000 00000000
Q ss_pred -----------ccccCCCCCCCC---------CC------------------CCCCHHHHHHHHHHHHHHhCCccccccE
Q 035902 58 -----------FCELPHMPFPSR---------TP------------------TFVPRISFINYVDNYVSQMGINPRYHRS 99 (381)
Q Consensus 58 -----------~~~~~~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
++.-...++... +. .-.+...+.+.+.+.+.+.+++++.++.
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 209 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF 209 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 000001111100 00 0013456777777777777999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 100 VESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 100 v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++++..+++....-+...+...++...+.++.||+|||...
T Consensus 210 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 210 ALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred EEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 99876653222222333332233456789999999999873
No 223
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.68 E-value=4.5e-07 Score=88.50 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=78.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCC----CCeee-ecCC---------------------
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAY----DRMKL-HLAK--------------------- 56 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~----~~~~~-~~~~--------------------- 56 (381)
||+|||||.||++||+.+++.|.+|+|+|+....++. +..... ..... +...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7999999999999999999999999999998654331 110000 00000 0000
Q ss_pred ---------cccccCCCCCCC---------C----------CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 57 ---------QFCELPHMPFPS---------R----------TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 ---------~~~~~~~~~~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
.++.-...++.. . +..-.....+...+.+.+.+.+++++.++.++++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~- 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD- 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-
Confidence 000000011100 0 00011234566777777777799999999999997654
Q ss_pred CCeE-EEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 109 AKAW-IIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 109 ~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+.. .+...+...++...+.++.||+|||...
T Consensus 160 -g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 160 -GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred -CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 432 2333222222345789999999999874
No 224
>PRK06370 mercuric reductase; Validated
Probab=98.68 E-value=3.2e-07 Score=87.36 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=78.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 218 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------PR--EDEDVAAAV 218 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876331 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++.|.+++..+ +...+.+... ++...+.+|.||+|+|..|+..
T Consensus 219 ~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~--~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 219 REILEREGIDVRLNAECIRVERDG--DGIAVGLDCN--GGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeC--CCceEEEeCEEEECcCCCcCCC
Confidence 777888899999999999998654 3334444321 1125799999999999998765
No 225
>PLN02507 glutathione reductase
Probab=98.68 E-value=3e-07 Score=88.04 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=80.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..+++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 250 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAVV 250 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHHH
Confidence 679999999999999999999999999999875221 10 124667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.|.++...+ +...+.+.++ .++.+|.|++|+|..|+...
T Consensus 251 ~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 251 ARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDHG-----EEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECCC-----cEEEcCEEEEeecCCCCCCC
Confidence 778888899999999999997654 3444555444 57999999999999987654
No 226
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.68 E-value=1.4e-07 Score=85.74 Aligned_cols=95 Identities=24% Similarity=0.379 Sum_probs=76.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-------------CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-------------SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRT 70 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-------------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (381)
.+++|+|||+.|+.+|-+|++. ..+|+|||+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 3699999999999999998764 13889999887432
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 71 PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+.+ ..++.++.+..+++.|+++++++.|++++.+. |++++++ +++.++.+|-|+|.++.
T Consensus 205 p~~--~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~----~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 205 PMF--PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGE----EEIPADTVVWAAGVRAS 263 (405)
T ss_pred cCC--CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCC----eeEecCEEEEcCCCcCC
Confidence 111 24788899999999999999999999998654 8887762 26999999999999943
No 227
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.67 E-value=3.6e-07 Score=86.94 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=80.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PG--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CC--CCHHHHHHH
Confidence 579999999999999999999999999999876321 11 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.++++.+++.++ +.+.+.+.++ +++.+|.|++|+|..|+...
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~g-----~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTG--DGVVVTLTDG-----RTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECCC-----cEEEecEEEEeecCCcCCCC
Confidence 888888899999999999997654 4445665554 57999999999999988653
No 228
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.66 E-value=3.1e-07 Score=87.34 Aligned_cols=61 Identities=11% Similarity=0.335 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+.+.+.+.+++.+ ++++++++|+++...+ ++.|.+.+.+...++...+++++||+|+|.+
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG 245 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCCEEEEEEEcCCCceEEEEcCEEEECCCcc
Confidence 45556666666665 7999999999998754 2457777654222222369999999999998
No 229
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=6.1e-07 Score=87.00 Aligned_cols=136 Identities=14% Similarity=0.052 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-CCCC--cCCCCCCCe--eeecCC---------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-SASL--WKKRAYDRM--KLHLAK--------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-~g~~--~~~~~~~~~--~~~~~~--------------------- 56 (381)
++||+|||+|.||++||..+ +.|.+|+|+|+... .+|. +....+... ..+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 38999999999999999999 88999999999764 3331 111100000 000000
Q ss_pred ---------cccccCCCCCCCC--------------CCC-----CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 57 ---------QFCELPHMPFPSR--------------TPT-----FVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 ---------~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
.++.....++... ++. -.+...+...+.+.+.+.++++++++.++++..++
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~- 164 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE- 164 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-
Confidence 0000001111100 000 01345677777777777899999999999987654
Q ss_pred CC-eEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 109 AK-AWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 109 ~~-~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.+ ...+...+...++...+.++.||+|||...
T Consensus 165 ~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 165 NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 23 222333221223345789999999999874
No 230
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.66 E-value=5.5e-07 Score=87.61 Aligned_cols=128 Identities=15% Similarity=0.252 Sum_probs=75.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-C-C-CCcCCC---------CCCCe-----------------ee-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-S-A-SLWKKR---------AYDRM-----------------KL- 52 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-~-g-~~~~~~---------~~~~~-----------------~~- 52 (381)
..+|+|||||++|+++|..|+++|++|+|||+... . + +.+... ....+ ..
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~ 160 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRIN 160 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceee
Confidence 37899999999999999999999999999999741 1 1 111100 00000 00
Q ss_pred ---ec-CCcc-cccCCCCCC--CCCC--CCCCHHHHHHHHHHHHHHhCCc-cccccEEEEEEEeCCCCeEEEEEeecCCC
Q 035902 53 ---HL-AKQF-CELPHMPFP--SRTP--TFVPRISFINYVDNYVSQMGIN-PRYHRSVESASYDENAKAWIIVAKNTALD 122 (381)
Q Consensus 53 ---~~-~~~~-~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~v~~~~~~~~ 122 (381)
+. ...+ ..+...... ...+ ....+.++.+.|.+. .+.. ++++++|+++..++ +.+++.+.++
T Consensus 161 ~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~~--d~VtV~~~dG--- 232 (668)
T PLN02927 161 GLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGEDVIRNESNVVDFEDSG--DKVTVVLENG--- 232 (668)
T ss_pred eeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEeC--CEEEEEECCC---
Confidence 00 0000 000000000 0011 123466666665432 3333 56788999998765 5566777765
Q ss_pred ceEEEEeCEEEEccCCCC
Q 035902 123 AYEEYVARYLVVATGENG 140 (381)
Q Consensus 123 ~~~~~~~d~vIlAtG~~~ 140 (381)
..+.+|.||.|.|.+.
T Consensus 233 --~ti~aDlVVGADG~~S 248 (668)
T PLN02927 233 --QRYEGDLLVGADGIWS 248 (668)
T ss_pred --CEEEcCEEEECCCCCc
Confidence 5789999999999884
No 231
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.65 E-value=6.2e-07 Score=85.81 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=80.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCee--eecCC----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRMK--LHLAK---------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~~--~~~~~---------------------- 56 (381)
++||+|||+|.||++||+.+++.|. |+|+|+....+|. |....+.... .+.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 9999998654431 2111000000 00000
Q ss_pred --------cccccCCCCCCC--------------CCCC-----CCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCC
Q 035902 57 --------QFCELPHMPFPS--------------RTPT-----FVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 --------~~~~~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~ 108 (381)
.++.-...++.. ..+. ..+...+.+.+.+.+++ .+++++.++.++++..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~- 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET- 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-
Confidence 000000011110 0000 11345777778777776 689999999999987653
Q ss_pred CCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 109 AKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 109 ~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.....+...+. ++...+.++.||+|||....
T Consensus 160 g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 GRVVGVWVWNR--ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CEEEEEEEEEC--CcEEEEEcCEEEECCCcccC
Confidence 22222444432 22357899999999999843
No 232
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.65 E-value=4e-07 Score=84.08 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+||+|||||++|+++|++|++.|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999975
No 233
>PLN02815 L-aspartate oxidase
Probab=98.64 E-value=6.1e-07 Score=87.18 Aligned_cols=136 Identities=11% Similarity=0.076 Sum_probs=78.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC--CcCCCCCCCee--eecCC----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS--LWKKRAYDRMK--LHLAK---------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~--~~~~~~~~~~~--~~~~~---------------------- 56 (381)
++||+|||+|.||++||+.+++.| +|+|+|+....+| .|....+.... .+.+.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~ 107 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV 107 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence 489999999999999999999999 9999999876554 11111000000 00000
Q ss_pred --------cccccCCCCCCC---------CC-----C-----CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCC
Q 035902 57 --------QFCELPHMPFPS---------RT-----P-----TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 --------~~~~~~~~~~~~---------~~-----~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~ 108 (381)
.+..-...++.. .. + .-.....+...+.+.+.+ .+++++.++.++++-.+++
T Consensus 108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~ 187 (594)
T PLN02815 108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQD 187 (594)
T ss_pred HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecC
Confidence 000000011100 00 0 011345666666666654 4889999999988876532
Q ss_pred CC---eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 109 AK---AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 109 ~~---~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++ ..-+...+...+....+.++.||||||..
T Consensus 188 g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 188 GGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred CCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 22 22243333223345678999999999987
No 234
>PRK14727 putative mercuric reductase; Provisional
Probab=98.64 E-value=4.8e-07 Score=86.42 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=77.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++...+ + ....++.+.+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~--~~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------F--REDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------C--cchHHHHHHH
Confidence 67999999999999999999999999999875311 0 0123567777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.+.++..++ +.+.+...+ .++.+|.||+|+|..|+...
T Consensus 235 ~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~------g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 235 TACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGH------GELRAEKLLISTGRHANTHD 287 (479)
T ss_pred HHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcC------CeEEeCEEEEccCCCCCccC
Confidence 888888899999999999997654 444455433 35889999999999987653
No 235
>PRK14694 putative mercuric reductase; Provisional
Probab=98.64 E-value=4.8e-07 Score=86.26 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=77.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|++.|.+|+++++...+ +. ...++.+.+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------~~--~~~~~~~~l 224 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------SQ--EDPAVGEAI 224 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------CC--CCHHHHHHH
Confidence 67999999999999999999999999999864311 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.++++++++.+.+++.++ +.+.+.+.+ ..+.+|.||+|+|..|+...
T Consensus 225 ~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 225 EAAFRREGIEVLKQTQASEVDYNG--REFILETNA------GTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEECC------CEEEeCEEEEccCCCCCcCC
Confidence 888888899999999999987654 444444433 35999999999999987653
No 236
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=7.9e-08 Score=88.43 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=77.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCC------------ee----eecCCcccccCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDR------------MK----LHLAKQFCELPHM 64 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~------------~~----~~~~~~~~~~~~~ 64 (381)
+.+||+|||||.||+.||.+.++.|.++.|+--+. .+|-...+....+ +. .........+.-+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 45999999999999999999999999999987653 2221111110000 00 0000001111111
Q ss_pred CCCCCCCC-----CCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 65 PFPSRTPT-----FVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 65 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
+....... ...+..+...++..++.. ++. .+...|.++..++......|.+.+| ..+.|+.||++||+
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~-l~q~~v~dli~e~~~~v~GV~t~~G-----~~~~a~aVVlTTGT 156 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH-LLQGEVEDLIVEEGQRVVGVVTADG-----PEFHAKAVVLTTGT 156 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce-ehHhhhHHHhhcCCCeEEEEEeCCC-----CeeecCEEEEeecc
Confidence 11111111 223344556666666543 444 4556677776655333455888887 78999999999999
Q ss_pred C
Q 035902 139 N 139 (381)
Q Consensus 139 ~ 139 (381)
+
T Consensus 157 F 157 (621)
T COG0445 157 F 157 (621)
T ss_pred c
Confidence 8
No 237
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.64 E-value=5.6e-07 Score=85.22 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=79.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. -..++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~~~~~ 213 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RS--FDSMISETI 213 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 11 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.+++++.++.+..+..+. .+...+.+.++ ...+.+|.||+|+|..|+...
T Consensus 214 ~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~g----~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 214 TEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFEDG----KSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred HHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECCC----cEEEEcCEEEEeeCCCcCccc
Confidence 777888899999999999997653 23344555443 246999999999999988653
No 238
>PRK07846 mycothione reductase; Reviewed
Probab=98.63 E-value=3.9e-07 Score=86.22 Aligned_cols=100 Identities=20% Similarity=0.131 Sum_probs=75.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~l 213 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISERF 213 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 00 113455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+..+ .++++++++++.+++.++ +...+.+.++ ..+.+|.|++|+|..|+...
T Consensus 214 ~~l~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 214 TELAS-KRWDVRLGRNVVGVSQDG--SGVTLRLDDG-----STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred HHHHh-cCeEEEeCCEEEEEEEcC--CEEEEEECCC-----cEeecCEEEEEECCccCccc
Confidence 55443 478899999999997654 3444555544 57999999999999988754
No 239
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.63 E-value=4.7e-07 Score=85.15 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.||++||..+. .|.+|+|+||....++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 589999999999999999985 7999999999876554
No 240
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=9.5e-07 Score=86.81 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=33.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
++||+|||||.||++||..+++.|.+|+|+|+....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4899999999999999999999999999999987543
No 241
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.63 E-value=3.6e-07 Score=86.19 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+.+|..|++.|.+|+++++.+.+.. +. ...++.+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~~ 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQIV 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHHH
Confidence 6799999999999999999999999999998763210 00 113566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.+++.++ . . +.+.++ ..+.+|.||+|+|..|...
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~~~--~-~-v~~~~g-----~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEGEE--R-V-KVFTSG-----GVYQADMVILATGIKPNSE 236 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEecCC--C-E-EEEcCC-----CEEEeCEEEECCCccCCHH
Confidence 788888899999999999987543 2 2 344454 5799999999999997754
No 242
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.63 E-value=6.3e-07 Score=78.83 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=108.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++.+|||||+.|+..+.-..+.|-+||++|-.+.+++. -..++.+.+
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~~ 258 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKAF 258 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHHH
Confidence 67999999999999999999999999999988876642 124888899
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCccee-ecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYM-HSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~-~~~~~~ 162 (381)
+..+.+.++.+.++++|+.+..+.+ +...+.+.+...++.+.+++|.+++|+|-+|..-.+ |++.. |... ...+..
T Consensus 259 qr~L~kQgikF~l~tkv~~a~~~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GL-gle~i-Gi~~D~r~rv~ 335 (506)
T KOG1335|consen 259 QRVLQKQGIKFKLGTKVTSATRNGD-GPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGL-GLEKI-GIELDKRGRVI 335 (506)
T ss_pred HHHHHhcCceeEeccEEEEeeccCC-CceEEEEEecCCCceeEEEeeEEEEEccCcccccCC-Chhhc-cccccccccee
Confidence 9999999999999999999998874 356677777666677889999999999999887654 33321 1000 000111
Q ss_pred CCCC--CCCCeEEEEcCCCCHHHHHHHHhhCC
Q 035902 163 NGGK--FIGKNVLVVGCGNSGMEIAYDLSSCG 192 (381)
Q Consensus 163 ~~~~--~~~~~v~viG~G~~~~e~a~~l~~~g 192 (381)
.... ..-..+-.||-=..|--+|....+.|
T Consensus 336 v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 336 VNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred ccccccccCCceEEecccCCcchhhhhhhhhc
Confidence 1111 12345777775444444555555554
No 243
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.63 E-value=9.3e-07 Score=83.77 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=75.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|++|++.+.+. +. ...++...+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~l 216 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------------------------------RH--LDEDISDRF 216 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 00 113445555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+..+ .+++++++++|.++..++ +...+.+.++ +++.+|.|++|+|..|+...
T Consensus 217 ~~~~~-~gI~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 217 TEIAK-KKWDIRLGRNVTAVEQDG--DGVTLTLDDG-----STVTADVLLVATGRVPNGDL 269 (452)
T ss_pred HHHHh-cCCEEEeCCEEEEEEEcC--CeEEEEEcCC-----CEEEcCEEEEeeccCcCCCC
Confidence 55443 478899999999998654 4455655554 57999999999999987653
No 244
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=9.7e-07 Score=86.23 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC---CCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS---VPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g---~~v~lie~~~~~g~ 40 (381)
++||+|||||.||++||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 489999999999999999999998 89999999875554
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.62 E-value=3.8e-07 Score=86.51 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..+++.|.+|+++++.+.+. +. ....++.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~-~~~~~~~~~l 197 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PD-SFDKEITDVM 197 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------ch-hcCHHHHHHH
Confidence 679999999999999999999999999999875321 00 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++++.+++.++ ....+.+++ ..+.+|.||+|+|..|+.+
T Consensus 198 ~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~------~~i~~d~vi~a~G~~p~~~ 249 (444)
T PRK09564 198 EEELRENGVELHLNEFVKSLIGED--KVEGVVTDK------GEYEADVVIVATGVKPNTE 249 (444)
T ss_pred HHHHHHCCCEEEcCCEEEEEecCC--cEEEEEeCC------CEEEcCEEEECcCCCcCHH
Confidence 888888899999999999986432 333344333 3699999999999987654
No 246
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.62 E-value=2.7e-07 Score=81.95 Aligned_cols=137 Identities=23% Similarity=0.314 Sum_probs=82.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhC------CCCeEEEecCCCCCCCcCCC------CCCCeee-----------ecCCc--
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL------SVPNIILEREDCSASLWKKR------AYDRMKL-----------HLAKQ-- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~------g~~v~lie~~~~~g~~~~~~------~~~~~~~-----------~~~~~-- 57 (381)
.+||+||||||||++||++|.+. .++|+++|+...+|+.-... .++.+.- ....+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 48999999999999999998764 56999999999888732111 1111100 00000
Q ss_pred --ccccCCCCCCCCCC------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec------CCCc
Q 035902 58 --FCELPHMPFPSRTP------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT------ALDA 123 (381)
Q Consensus 58 --~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~------~~~~ 123 (381)
+..-..++.|.-++ -..+..++.+++-+.++.+|+++.-+..+..+-.+++++.-.+-++|- ...+
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd 235 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKD 235 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccc
Confidence 00111122222111 124567899999999999999987776666666555433322333321 0000
Q ss_pred ----eEEEEeCEEEEccCCC
Q 035902 124 ----YEEYVARYLVVATGEN 139 (381)
Q Consensus 124 ----~~~~~~d~vIlAtG~~ 139 (381)
.-++.++.-|.|-|++
T Consensus 236 ~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 236 TFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred cccccceecceeEEEecccc
Confidence 1358899999999987
No 247
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=1.5e-06 Score=84.94 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCC---CCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDEN---AKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+.+.|.+.+++.++++..++.+.++..+++ ....-+...+...++...+.++.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 456777888888888999999999999876431 22222333222223345789999999999984
No 248
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.61 E-value=2.8e-07 Score=86.98 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+.. ....++.+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHHH
Confidence 5799999999999999999999999999998763210 0123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.+++. .. +.+.++ ..+.+|.|++|+|..|+..
T Consensus 196 ~~~l~~~gI~i~~~~~v~~i~~----~~--v~~~~g-----~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 196 LDELDKREIPYRLNEEIDAING----NE--VTFKSG-----KVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred HHHHHhcCCEEEECCeEEEEeC----CE--EEECCC-----CEEEeCEEEECcCCCcChH
Confidence 7778888999999999998852 22 666554 4689999999999998754
No 249
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.60 E-value=4e-07 Score=91.87 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|++..+.+. +. .-..+..+.+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~~-~ld~~~~~~l 193 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------AE-QLDQMGGEQL 193 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------hh-hcCHHHHHHH
Confidence 579999999999999999999999999999876321 00 0123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++.+++.|+++++++.+.++..+.......+.+.++ ..+.+|.||+|+|..|+..
T Consensus 194 ~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG-----~~i~~D~Vv~A~G~rPn~~ 248 (847)
T PRK14989 194 RRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG-----SELEVDFIVFSTGIRPQDK 248 (847)
T ss_pred HHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC-----CEEEcCEEEECCCcccCch
Confidence 788888899999999999997543223344666666 6799999999999998753
No 250
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.60 E-value=1.3e-06 Score=80.78 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=40.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCee
Q 035902 5 PVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMK 51 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~ 51 (381)
+++|||||++|++||+.|++++ .+++|+|+++.+||........+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~ 50 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFL 50 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEE
Confidence 5999999999999999999998 8999999999999976654444333
No 251
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.59 E-value=1.9e-06 Score=82.14 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=77.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~~ 216 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-------------------------------P--LEDPEVSKQA 216 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------c--chhHHHHHHH
Confidence 689999999999999999999999999999876321 0 0123667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++. +++++++++.++..++. ....+...++ +..++.+|.||+|+|..|+...
T Consensus 217 ~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~---~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 217 QKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGG---KTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred HHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCC---ceEEEEeCEEEEccCCccCCCC
Confidence 7777777 99999999999976542 2333332222 2357999999999999988764
No 252
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.59 E-value=7.8e-07 Score=84.22 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=77.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|.+.|.+|+|+++.+.+. +.+ ..++.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~l 205 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADNI 205 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHHH
Confidence 579999999999999999999999999999875321 111 23566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++++.++..++ +.+.+...+ .++.+|.|++|+|..|+..
T Consensus 206 ~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~------g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 206 ATILRDQGVDIILNAHVERISHHE--NQVQVHSEH------AQLAVDALLIASGRQPATA 257 (441)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcC------CeEEeCEEEEeecCCcCCC
Confidence 778888899999999999998654 444444333 2488999999999998764
No 253
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=9.8e-07 Score=84.08 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=78.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..+.+.|.+|+||++.+.+. +. ...++.+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHHH
Confidence 679999999999999999999999999999886431 11 123566667
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++. +.+++++.+..+...+ +...+.+.++. ++..++.+|.||+|+|..|+...
T Consensus 222 ~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~~~-~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 222 TKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEGKK-APAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred HHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEeCC-CcceEEEeCEEEEeecccccCCc
Confidence 7777666 8899999999987654 34445554321 12356999999999999988653
No 254
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.59 E-value=7.6e-07 Score=85.33 Aligned_cols=100 Identities=18% Similarity=0.068 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++...+ +. ...++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~~--~d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--------------------------------RG--FDRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--------------------------------cc--CCHHHHHHH
Confidence 58999999999999999999999999999864311 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.+++++.++.+..+...+ +...+.+.++ +.+.+|.|++|+|..|+...
T Consensus 229 ~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 229 VEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDG-----TTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred HHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCC-----CEEEcCEEEEeeCCCCCccc
Confidence 778888899999999888887654 3344555554 46899999999999988653
No 255
>PRK13748 putative mercuric reductase; Provisional
Probab=98.58 E-value=7.4e-07 Score=87.13 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=77.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|.+.|.+|+|+++...+ +. ...++.+.+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~l 316 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEAV 316 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHHH
Confidence 68999999999999999999999999999975311 10 123667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.+.++..++ +.+.+...+ ..+.+|.||+|+|..|+...
T Consensus 317 ~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 317 TAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGH------GELRADKLLVATGRAPNTRS 369 (561)
T ss_pred HHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecC------CeEEeCEEEEccCCCcCCCC
Confidence 888888899999999999987654 444454433 25899999999999988653
No 256
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.57 E-value=5.5e-07 Score=85.37 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~ 41 (381)
.++++|||||.||++||..|.+. |.+|+|+|+.+.+||.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 37899999999999999999995 6799999999988874
No 257
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.57 E-value=1.3e-06 Score=85.17 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|++|++||+.++++|.+|+|+|+....||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 48999999999999999999999999999999886654
No 258
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.57 E-value=1.1e-06 Score=82.61 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++.+++|+++..++ +.+ .+.+++ .++.+|+||+|+|.+
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~------~~~~a~~VV~a~G~~ 256 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGG------GVITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCC------cEEeCCEEEECCCcc
Confidence 34556666677777899999999999998764 333 344443 468999999999987
No 259
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.56 E-value=1.1e-06 Score=83.81 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=78.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.. +. +. ...++.+.+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~~--~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------RG--FDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------cc--cCHHHHHHH
Confidence 579999999999999999999999999998742 10 10 124667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.|+++++++.+..+...+ +...+...++. +..++.+|.||+|+|..|+...
T Consensus 227 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~--~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 227 GEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDST--NGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred HHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCC--cceEEEeCEEEEEecCCcCCCc
Confidence 888888899999999888887654 34445554431 1247999999999999987653
No 260
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.56 E-value=9e-08 Score=91.27 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=39.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK 43 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~ 43 (381)
|+.+||+|||||+.|+.||..|+++|++|+|+|+++.+||.-+
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 6679999999999999999999999999999999999998433
No 261
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.55 E-value=2.7e-06 Score=83.95 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
++||+|||||.||++||..+++.|.+|+|+|+....
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 489999999999999999999999999999987644
No 262
>PRK07208 hypothetical protein; Provisional
Probab=98.54 E-value=2.3e-07 Score=88.91 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=40.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
|+++||+|||||++|++||+.|.++|.+|+|+|+++.+||....
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 45699999999999999999999999999999999999996544
No 263
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.54 E-value=6.4e-07 Score=83.39 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
.++||+|||||++|+++|++|+++|.+|+++|+....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 4699999999999999999999999999999988643
No 264
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.54 E-value=1.1e-06 Score=83.68 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=77.2
Q ss_pred ccEEEECCCHHHHHHHHHHHh---CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN---LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~---~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.+++|||||+.|+.+|..+.. .|.+|+|+++.+.+. +. ...++.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~~~ 234 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDSTLR 234 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHHHH
Confidence 679999999999999976654 389999999876321 11 124677
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+.+++.++++++++.+.++...+ ++...+.+.++ .++.+|.||+|+|..|+..
T Consensus 235 ~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~g-----~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 235 KELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFESG-----KTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcCC-----CEEEcCEEEEeeCCCcCcc
Confidence 778888888899999999999997653 23334555444 5799999999999998765
No 265
>PTZ00367 squalene epoxidase; Provisional
Probab=98.54 E-value=5.7e-07 Score=86.73 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4799999999999999999999999999999875
No 266
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.54 E-value=2.1e-06 Score=83.51 Aligned_cols=137 Identities=17% Similarity=0.100 Sum_probs=79.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCC--cCCCCCCCee--ee-----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASL--WKKRAYDRMK--LH----------------------- 53 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~--~~~~~~~~~~--~~----------------------- 53 (381)
++||+|||||.||++||..+++. |.+|+|+||....++. +......... .+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999999999999999987 5799999998765542 1111000000 00
Q ss_pred -----cCC--cccccCCCCCCC---------CCC----------CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEe
Q 035902 54 -----LAK--QFCELPHMPFPS---------RTP----------TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYD 106 (381)
Q Consensus 54 -----~~~--~~~~~~~~~~~~---------~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~ 106 (381)
.+. .+..-...++.. .+. .-.+...+.+.+.+.+.+ .++.+..++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 000 000000011100 000 011355677777766655 47888889999988765
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 107 ENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 107 ~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+ +...-+...+...+....+.++.||+|||...
T Consensus 163 ~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 163 D-GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred C-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 4 22222222222223446799999999999874
No 267
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.54 E-value=3.2e-06 Score=82.44 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|++||+.+++.|.+|+|+|+....||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 48999999999999999999999999999999986665
No 268
>PTZ00058 glutathione reductase; Provisional
Probab=98.53 E-value=1.2e-06 Score=84.52 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=78.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..+++.|.+|+|+++.+.+. +.+ ..++.+.+
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~i~~~l 284 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RKF--DETIINEL 284 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------ccC--CHHHHHHH
Confidence 679999999999999999999999999999876321 111 23566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.+..+.++..++. +...+...++ .+.+.+|.|++|+|..|+...
T Consensus 285 ~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~----~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 285 ENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDG----RKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred HHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCC----CEEEECCEEEECcCCCCCccc
Confidence 7778888999999999999976532 2333333332 257999999999999887653
No 269
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.53 E-value=2e-06 Score=84.15 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=30.6
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
|+|||+|.||++||..+++.|.+|+|+|+...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998733
No 270
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.53 E-value=6.3e-07 Score=90.35 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=78.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +.. -.......+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------------------------------~~~-ld~~~~~~l 188 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------------------------------AKQ-LDQTAGRLL 188 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------------------------------hhh-cCHHHHHHH
Confidence 579999999999999999999999999999875321 000 113455667
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++.+++.|+++++++.+.++..+. ....|.+.++ ..+.+|.||+|+|..|+..
T Consensus 189 ~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~dG-----~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 189 QRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKDG-----SSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred HHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECCC-----CEEEcCEEEECCCCCcCcH
Confidence 777788899999999998886543 3344667666 6799999999999998764
No 271
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.52 E-value=9.8e-07 Score=82.86 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=80.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|++|+.+|..++++|.+|+++|..+.+++. ... .++.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------------------~~~-~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------------------LLD-PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------------------hhh-HHHHHHH
Confidence 68999999999999999999999999999998855421 000 5788888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.+.+++++++++++..+..++......... +...++ ..+.+|.+++++|..|+
T Consensus 185 ~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 185 AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG-----EEIKADLVIIGPGERPN 238 (415)
T ss_pred HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC-----cEEEeeEEEEeeccccc
Confidence 889999999999999999998765211111 344444 67999999999999985
No 272
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.52 E-value=3.1e-06 Score=88.83 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||||||+|.||++||..+++.|.+|+|+|+....||
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 48999999999999999999999999999999987766
No 273
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.50 E-value=3.2e-06 Score=82.43 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~ 40 (381)
++||+|||||.||++||+.+++. |.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 48999999999999999999987 479999999875544
No 274
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.50 E-value=2.1e-06 Score=84.17 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=77.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+..|..+.+.|.+|+||++.+.+. +. ...++.+++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~~--~d~eis~~l 359 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------PL--LDADVAKYF 359 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------cc--CCHHHHHHH
Confidence 579999999999999999999999999999876432 10 123566666
Q ss_pred HHHH-HHhCCccccccEEEEEEEeCCCCeEEEEEeecC---CC-------ceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYV-SQMGINPRYHRSVESASYDENAKAWIIVAKNTA---LD-------AYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~---~~-------~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+ ++.+++++.++.|.++...+......+...+.. .. +.+.+.+|.|++|+|..|+...
T Consensus 360 ~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 360 ERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred HHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 6654 567999999999999976542222334433211 00 1147999999999999988654
No 275
>PRK12839 hypothetical protein; Provisional
Probab=98.44 E-value=1.4e-05 Score=77.77 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|+.+++.|.+|+|+|+...+||
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 48999999999999999999999999999999876665
No 276
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.43 E-value=1.5e-06 Score=81.65 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=73.3
Q ss_pred cEEEECCCHHHHHHHHHHHh--------------CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNN--------------LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRT 70 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~--------------~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (381)
+++|||||+.|+.+|..|+. .+.+|+||++.+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------- 223 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------- 223 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------------------
Confidence 79999999999999999875 367899999875321
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 71 PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+.+ ..++.+.+++.+++.|+++++++.|.++..+ . +.++++ +++.+|.+|+|+|..|+
T Consensus 224 ~~~--~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~--v~~~~g-----~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 224 GSF--DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----E--VVLKDG-----EVIPTGLVVWSTGVGPG 281 (424)
T ss_pred ccC--CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----E--EEECCC-----CEEEccEEEEccCCCCc
Confidence 111 2356778888888899999999999888632 2 667666 67999999999998865
No 277
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.43 E-value=1.3e-06 Score=77.86 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=87.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceec-----------hhhHHHHHHHHhhCc---HHHHHHHHHHHh
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLT-----------REIVFAGMLLLKFLP---CKLVDFIVVMLS 234 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p-----------~~~~~~~~~~~~~l~---~~~~~~~~~~~~ 234 (381)
...++|||+|+.|+=+|..+++.|.+|.++.+.+. +-. -........+....| +.....+..+..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35799999999999999999999999999998772 111 011111222333333 222222222222
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEE
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIF 308 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~ 308 (381)
.-+..-..++|+.........+-....+...+-+..+.++++.+|++++. |.++..+ .+.+.+|+++.||.+|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 22222233444432221111111111233344456678888999999998 8888765 35567888999999999
Q ss_pred ecCCCCCc
Q 035902 309 ATGYKSTV 316 (381)
Q Consensus 309 a~G~~p~~ 316 (381)
|+|-+..+
T Consensus 162 AtGG~S~P 169 (408)
T COG2081 162 ATGGKSWP 169 (408)
T ss_pred ecCCcCCC
Confidence 99955433
No 278
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.43 E-value=1.8e-06 Score=83.60 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.||++||+.++ .|.+|+|+||....++
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 489999999999999999996 5999999999876554
No 279
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.43 E-value=1.4e-05 Score=78.22 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|..++++|.+|+|||++...||
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 58999999999999999999999999999999876655
No 280
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.42 E-value=5.5e-06 Score=80.20 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.||++||+.+++. .+|+|+|+....+|
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 48999999999999999999986 89999999876554
No 281
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=4.6e-06 Score=80.88 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+| +|++||..+++.|.+|+|+|+.+.+||
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 5899999999 899999999999999999999987776
No 282
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.41 E-value=1.5e-06 Score=75.08 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=31.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
.++||+|||||.||++|++.|+++|.++.||.+.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 1699999999999999999999999999999977
No 283
>PLN02546 glutathione reductase
Probab=98.41 E-value=3.9e-06 Score=81.05 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=76.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..|.+.|.+|+|+++.+.+. +. ...++..++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~l 299 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------RG--FDEEVRDFV 299 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 10 124666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|+++++++.+.++...+ ++...+...++ ....+|.||+|+|..|+...
T Consensus 300 ~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~~~~g-----~~~~~D~Viva~G~~Pnt~~ 354 (558)
T PLN02546 300 AEQMSLRGIEFHTEESPQAIIKSA-DGSLSLKTNKG-----TVEGFSHVMFATGRKPNTKN 354 (558)
T ss_pred HHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEEECCe-----EEEecCEEEEeeccccCCCc
Confidence 778888899999999999987643 23333433322 34458999999999987653
No 284
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.41 E-value=8.7e-07 Score=89.20 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCC---CC--CcCCCCCCCeeeecC-------Cccccc-------CC
Q 035902 5 PVVIVGAGPAGLATSACLNNL--SVPNIILEREDCS---AS--LWKKRAYDRMKLHLA-------KQFCEL-------PH 63 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~---g~--~~~~~~~~~~~~~~~-------~~~~~~-------~~ 63 (381)
+|+||||||||+++|+.|++. |++|+|+|++... |. .........+....+ ..+..+ ..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999998 8999999998753 21 111111111100000 000000 00
Q ss_pred CCC-CCCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 64 MPF-PSRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 64 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
... ..... ....+.++.+.|.+.+.+.++++++++++.++.. ....+|.||.|+|..+
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------~~~~~D~VVgADG~~S 141 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------------LAADADLVIASDGLNS 141 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------------hhcCCCEEEEcCCCCH
Confidence 000 00001 1256889999999999988999998887754321 1246899999999773
No 285
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.40 E-value=1e-05 Score=78.61 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|+.+++.|.+|+|||+....||
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 58999999999999999999999999999999876655
No 286
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.40 E-value=5.9e-06 Score=79.56 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+| +|++||+++++.|.+|+|||+....||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4899999999 999999999999999999999876554
No 287
>PRK10262 thioredoxin reductase; Provisional
Probab=98.37 E-value=4.7e-06 Score=75.46 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~~ 191 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKRL 191 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHHH
Confidence 689999999999999999999999999999875210 112345566
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCC-CceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTAL-DAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++.++.+.++..++ .+.-.+.+.++.. ++.+++.+|.||+|+|..|+..
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 666777799999999999987543 1222355554321 2335799999999999997754
No 288
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=78.46 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
+.+|+|||||.+|+++|..|.++|++|+|+|+...+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 4689999999999999999999999999999876553
No 289
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.37 E-value=1.4e-05 Score=77.62 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|++|+++|..+++.|.+|+|||+....||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 48999999999999999999999999999999876654
No 290
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.37 E-value=3e-06 Score=77.02 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=86.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
..|+++|+|..|+.+|..|...+.+||+|++.+..- +. .-...+.+.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------------------------------~~-lf~~~i~~~~ 261 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------------------------------PR-LFGPSIGQFY 261 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-------------------------------hh-hhhHHHHHHH
Confidence 469999999999999999999999999999886211 11 1234677778
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
+.+.+..+++++.++.+.+++-..+...-.|.+.++ ..+.+|.||+.+|..|+...+.
T Consensus 262 ~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg-----~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 262 EDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG-----KTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC-----CEeccCeEEEeecccccccccc
Confidence 888888899999999998887765445555778887 8999999999999999887654
No 291
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.37 E-value=4.7e-07 Score=85.58 Aligned_cols=39 Identities=28% Similarity=0.523 Sum_probs=37.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+.++|+|||||+||++||.+|...|.+|+|+|..+++||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 458999999999999999999999999999999999988
No 292
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.34 E-value=5.4e-06 Score=79.91 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.+.+|+++++.+.+. .. ..+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~~----~~l 393 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------AD----KVL 393 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------hh----HHH
Confidence 589999999999999999999999999998765210 01 123
Q ss_pred HHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
...+++ .|+++++++.+.++..++ ++...|.+.++..++.+.+.+|.|++|+|..|+..-
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~ 454 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEW 454 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchH
Confidence 334443 589999999998886543 122236666544444568999999999999987643
No 293
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.34 E-value=8.5e-06 Score=79.60 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|..++++|.+|+|+|+...+||
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999999999999999877666
No 294
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.34 E-value=1.4e-05 Score=77.90 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHH----hCCCCeEEEecCCCC
Q 035902 5 PVVIVGAGPAGLATSACLN----NLSVPNIILEREDCS 38 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~----~~g~~v~lie~~~~~ 38 (381)
||+|||||.||++||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999997643
No 295
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.34 E-value=5.3e-06 Score=74.27 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=70.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. .. ..+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~----~~~ 182 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AE----KIL 182 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cC----HHH
Confidence 689999999999999999999999999999865210 01 122
Q ss_pred HHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++. ++++++++.+.++..++ ....+.+.+...+..+++.+|.||+|+|..|..
T Consensus 183 ~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 183 LDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT 240 (300)
T ss_pred HHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCceEEEEccEEEEeeCCCCCh
Confidence 3334444 89999999999887543 322344443323344789999999999988765
No 296
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.32 E-value=2.3e-06 Score=75.43 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.||+|||||.+|.+.|+.|++.|.+|.+|||+-
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 799999999999999999999999999999973
No 297
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.32 E-value=8.2e-06 Score=78.41 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||||.||+.||..+++.|.+|+|+|+....+|
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 48999999999999999999999999999999875543
No 298
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.32 E-value=2.2e-06 Score=79.04 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
.+|+|||||.+|+.||..|+++|.+|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876543
No 299
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.27 E-value=1e-05 Score=77.77 Aligned_cols=61 Identities=20% Similarity=0.106 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+.+.+.+.+.+. +++++.++.++++..++ +.+ .+...+. ++...+.++.||+|||...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~--~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATA--GGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeC--CeEEEEECCEEEEcCCCCc
Confidence 456777777666654 88999998898876543 332 2333331 1224689999999999973
No 300
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.26 E-value=5e-06 Score=72.08 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhh-CcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF-LPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
..-+++|||+|++|+-+|..+++.|.+|.++.|.+. +-.. ...-...+... +.... ..+ ++..++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~-~Ggg-~~~gg~~~~~~~~~~~~-~~~-----------l~~~gi 85 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA-FGGG-SWGGGMLFSKIVVEKPA-HEI-----------LDEFGI 85 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCcc-ccCCCcceecccccchH-HHH-----------HHHCCC
Confidence 456799999999999999999999999999999872 2100 00000000000 00000 000 112233
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C-----eEEEc-----------CCcEeeccEE
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-----EVEFE-----------NGKIEEFEAI 306 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-----~v~~~-----------~g~~~~~D~v 306 (381)
+....+..+. ...++.+...+.+.+.+.+++++.+ ++.+.. + ++..+ +...++++.|
T Consensus 86 ~~~~~~~g~~---~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~V 162 (254)
T TIGR00292 86 RYEDEGDGYV---VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVV 162 (254)
T ss_pred CeeeccCceE---EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEE
Confidence 2221111110 0011223334455566677888777 555432 2 33332 2247899999
Q ss_pred EEecCCCCCcchhccccCCcc-cccC---CCCCCC--------CCCCCCCCCcEEEEeccccc--------cc--CccHH
Q 035902 307 IFATGYKSTVRNWLKRADKDF-FDEY---GMPKRN--------CPNHWKGENGLYCAGFSRTG--------LH--GISID 364 (381)
Q Consensus 307 i~a~G~~p~~~~~~~~~~~~~-~~~~---g~~~~~--------~~~~~~~~~~ifa~Gd~~~~--------~~--~a~~~ 364 (381)
|.|||.......++. +..++ .... |.-..+ ...+..-.|++|++|-..+. |. ....+
T Consensus 163 VdATG~~a~v~~~l~-~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~s 241 (254)
T TIGR00292 163 VDATGHDAEIVAVCA-KKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLS 241 (254)
T ss_pred EEeecCCchHHHHHH-HHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHh
Confidence 999998876655544 32222 1111 100000 00122346999999976543 21 56679
Q ss_pred HHHHHHHhhhccc
Q 035902 365 AKNIANDINLALT 377 (381)
Q Consensus 365 a~~~a~~i~~~l~ 377 (381)
|+.+|+.|.+.|+
T Consensus 242 g~~~a~~~~~~~~ 254 (254)
T TIGR00292 242 GKHVAEQILEKLK 254 (254)
T ss_pred hHHHHHHHHHHhC
Confidence 9999999988763
No 301
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.25 E-value=5e-06 Score=72.27 Aligned_cols=193 Identities=19% Similarity=0.202 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH-HHHHHHhhhhhcCccccCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD-FIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (381)
..-+++|||+|++|+-+|..+++.|.+|.++.+.+. +-..... ... .++....+ ....+ ++..++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~-~Ggg~~~--gg~---~~~~~~v~~~~~~~--------l~~~gv 89 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS-FGGGMWG--GGM---LFNKIVVQEEADEI--------LDEFGI 89 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCCcccc--Ccc---ccccccchHHHHHH--------HHHCCC
Confidence 456899999999999999999999999999998762 1100000 000 00000000 00000 112233
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CC----eEEEc-----------CCcEeeccEEE
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RN----EVEFE-----------NGKIEEFEAII 307 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~----~v~~~-----------~g~~~~~D~vi 307 (381)
.......... ...+..+...+.+.+.+.+++++.+ ++.+. ++ ++... +..++.++.||
T Consensus 90 ~~~~~~~g~~---~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 90 RYKEVEDGLY---VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred CceeecCcce---eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 2211111000 0112233334555666678888877 55553 22 22221 22478999999
Q ss_pred EecCCCCCcchhccccCCc--ccccCCCCCCC--------CCCCCCCCCcEEEEecccccc--------c--CccHHHHH
Q 035902 308 FATGYKSTVRNWLKRADKD--FFDEYGMPKRN--------CPNHWKGENGLYCAGFSRTGL--------H--GISIDAKN 367 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~--~~~~~g~~~~~--------~~~~~~~~~~ifa~Gd~~~~~--------~--~a~~~a~~ 367 (381)
.|||........+. ...+ .....|.-..+ ...+..-.|++|++|-+.+.. . ....+|+.
T Consensus 167 ~ATG~~a~v~~~l~-~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~ 245 (257)
T PRK04176 167 DATGHDAEVVSVLA-RKGPELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKK 245 (257)
T ss_pred EEeCCCcHHHHHHH-HHcCCcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHH
Confidence 99997766543332 2111 01111111100 001222469999999775432 1 66679999
Q ss_pred HHHHhhhcccc
Q 035902 368 IANDINLALTD 378 (381)
Q Consensus 368 ~a~~i~~~l~~ 378 (381)
+|+.|.+.|+.
T Consensus 246 ~a~~~~~~~~~ 256 (257)
T PRK04176 246 VAELILEKLKK 256 (257)
T ss_pred HHHHHHHHhhc
Confidence 99999998864
No 302
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.23 E-value=3.8e-05 Score=78.91 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
++||+|||||.||++||+.+++.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 48999999999999999999999999999999764
No 303
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.22 E-value=1.4e-05 Score=75.46 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+.+.+.+.+++.++++++++.|+++..+++.+.. .+...++ ...+.++.||+|||..
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~----~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG----THRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC----cEEEEcCEEEEcCCCc
Confidence 4567788888888899999999999998765212322 1232221 2578999999999976
No 304
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=8.2e-06 Score=73.97 Aligned_cols=131 Identities=13% Similarity=0.150 Sum_probs=71.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCe------------e------eecC---Ccccc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRM------------K------LHLA---KQFCE 60 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~------------~------~~~~---~~~~~ 60 (381)
+|||+|||||.||+.+|.+.++.|.+.+++-.+- .+|-...+..+.+. . ++.+ ....+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LN 107 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLN 107 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhh
Confidence 4899999999999999999999999999988652 23321111111000 0 0000 00001
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCC-e---EEEEEeecCCCceEEEEeCEEEEc
Q 035902 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAK-A---WIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~-~---~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
...-|--........+..+..+++..+... ++.+ ....|.++...+.+. . -.|.+.+| ..+.++.||+.
T Consensus 108 rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~i-re~~V~dliv~~~~~~~~~~~gV~l~dg-----t~v~a~~VilT 181 (679)
T KOG2311|consen 108 RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEI-REGAVADLIVEDPDDGHCVVSGVVLVDG-----TVVYAESVILT 181 (679)
T ss_pred ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchh-hhhhhhheeeccCCCCceEEEEEEEecC-----cEeccceEEEe
Confidence 111111111112334445555666555433 4443 344566665433221 1 12556666 78999999999
Q ss_pred cCCC
Q 035902 136 TGEN 139 (381)
Q Consensus 136 tG~~ 139 (381)
||.+
T Consensus 182 TGTF 185 (679)
T KOG2311|consen 182 TGTF 185 (679)
T ss_pred eccc
Confidence 9998
No 305
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.21 E-value=1.6e-06 Score=82.47 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKK 44 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~ 44 (381)
++|+|||||+||++||+.|++.| .+|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 46999999999999999999987 899999999999985443
No 306
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.20 E-value=2.3e-05 Score=67.69 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
..|+|||+|.||++++..+...+-.|+|+|+...+||.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 35999999999999999999998889999999988873
No 307
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.20 E-value=1.1e-05 Score=74.51 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN----LS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~----~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
++|+|||+|++|+.+|..|++ +| .+|+|+.... +. +. ...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~-~l-------------------------------~~--~~~ 191 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGAS-LL-------------------------------PG--FPA 191 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCc-cc-------------------------------cc--CCH
Confidence 579999999999999999975 34 4788883321 10 10 123
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.+...+++.+++.+++++.++.+..++. +. +.+.++ ..+.+|.||+|+|..|.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~--v~~~~g-----~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD----GA--LILADG-----RTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC----Ce--EEeCCC-----CEEecCEEEEccCCChh
Confidence 5566777788888999999999988742 22 666655 67999999999999865
No 308
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.19 E-value=1.7e-05 Score=76.64 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=72.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||..|+.+|..|+..+.+|+|+++.+.+. .. ..+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~~----~~l 392 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------AD----QVL 392 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------cc----HHH
Confidence 689999999999999999999999999998875220 00 122
Q ss_pred HHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
...+. ..|+++++++.+.++..++ ...-.+.+.+...++.+.+.+|.|++|+|..|+..
T Consensus 393 ~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~ 452 (517)
T PRK15317 393 QDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTE 452 (517)
T ss_pred HHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCch
Confidence 33333 3589999999999987653 12222555554444556899999999999998654
No 309
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.18 E-value=3.1e-06 Score=81.38 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=36.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++||+|||||++|++||..|++.|++|+|+|+++.+||.
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 368999999999999999999999999999999989883
No 310
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.15 E-value=1.7e-05 Score=71.96 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=69.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCe--eeecCC---cccccCCC------C-CCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRM--KLHLAK---QFCELPHM------P-FPS 68 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~--~~~~~~---~~~~~~~~------~-~~~ 68 (381)
.++|+|||||.++..++..|.+.+. +|+++-|+..+-.. ....+ ....+. .++..+.- . ...
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~----d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~ 265 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM----DDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRH 265 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGG
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC----ccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHh
Confidence 3789999999999999999999865 79999987632110 00000 000000 00011000 0 000
Q ss_pred CCCCCCCHHHHHHH-----HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 69 RTPTFVPRISFINY-----VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 69 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..-.-.+.+.+.+. -+....+..+.++.+++|+++...+ .+.|.+.+.+...++...+.+|.||+|||..
T Consensus 266 ~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 266 TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 00011122222111 1222223356678899999999886 3479999999877788899999999999963
No 311
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.14 E-value=3.1e-06 Score=77.35 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=36.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 79999999999999999999999999999999999883
No 312
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.14 E-value=1.8e-05 Score=72.63 Aligned_cols=100 Identities=15% Similarity=0.011 Sum_probs=67.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+|+|||+|+.|+.+|..|.+.|.+ |+|+++..... . +.. ..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-------------------------------~--~~~----~~ 215 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-------------------------------A--PAG----KY 215 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-------------------------------C--CCC----HH
Confidence 5799999999999999999989987 99998764100 0 000 11
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec---------------CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT---------------ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~---------------~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+.+++.++++++++.+.++...+ +.-.+.+.+. ..++...+.+|.||+|+|..|..
T Consensus 216 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 216 EIERLIARGVEFLELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHHHcCCEEeeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 2233566799999998888876432 2112332211 01234679999999999999764
No 313
>PLN02576 protoporphyrinogen oxidase
Probab=98.13 E-value=4.2e-06 Score=80.60 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=36.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~~ 41 (381)
++||+|||||++|++||+.|.+. |.+|+|+|+++.+||.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 37899999999999999999999 9999999999999984
No 314
>PRK07233 hypothetical protein; Provisional
Probab=98.13 E-value=3e-06 Score=80.20 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=35.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+|+|||||++|++||+.|++.|.+|+|+|+++.+||.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 5999999999999999999999999999999999984
No 315
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=3e-06 Score=78.33 Aligned_cols=38 Identities=32% Similarity=0.347 Sum_probs=36.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++|+|+|||.||++||+.|++.|++|+|+|.++.+||+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 47999999999999999999999999999999999983
No 316
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.12 E-value=3.8e-06 Score=80.19 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|++||+.|.++ |.+|+|+|+++.+||.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 7899999999999999999999 9999999999999984
No 317
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.12 E-value=3.7e-05 Score=66.77 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=35.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--CCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED--CSAS 40 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--~~g~ 40 (381)
|.+.||+|||+|.||+-+|.+|+..|.+|+|+|++. .+||
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 346899999999999999999999999999999864 4455
No 318
>PLN02268 probable polyamine oxidase
Probab=98.12 E-value=4e-06 Score=79.38 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=35.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
.+|+|||||.+|++||+.|.+.|.+|+|+|+++.+||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999999883
No 319
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.10 E-value=2.9e-05 Score=70.41 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.++.+.+.+++++.|++++++++|.++...++ ....|.+.++ ..+.+|+||+|.|-.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-~~~~v~~~~g-----~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-EVLGVKLTKG-----EEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-ceEEEEccCC-----cEEecCEEEEccCcc
Confidence 35677888999999999999999999998763 2456788877 789999999999965
No 320
>PLN02568 polyamine oxidase
Probab=98.10 E-value=4.5e-06 Score=80.38 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=37.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCC-----CCeEEEecCCCCCCCcC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLS-----VPNIILEREDCSASLWK 43 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g-----~~v~lie~~~~~g~~~~ 43 (381)
+.+||+|||||++|++||+.|++.| .+|+|+|++..+||.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 4589999999999999999999887 89999999999998543
No 321
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.06 E-value=4.6e-06 Score=79.57 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhC------CCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL------SVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~------g~~v~lie~~~~~g~~ 41 (381)
++|+|||||++|++||+.|.+. +.+|+|+|+++.+||.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 5799999999999999999986 3799999999999984
No 322
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.05 E-value=6.8e-06 Score=78.99 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=35.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+||+|||||.+|+++|..|+++|.+|+|+|++..+||
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5899999999999999999999999999999998887
No 323
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.04 E-value=2.9e-05 Score=63.55 Aligned_cols=197 Identities=22% Similarity=0.273 Sum_probs=102.4
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcccc
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKY 244 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
.++....++|+|+|++|.-+|.+|++.|.+|.++.|+.. +--. .+--+..+.+..-.+-.+.+ ++..
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls-~GGG-~w~GGmlf~~iVv~~~a~~i-----------L~e~ 92 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS-FGGG-IWGGGMLFNKIVVREEADEI-----------LDEF 92 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc-cCCc-ccccccccceeeecchHHHH-----------HHHh
Confidence 344567899999999999999999999999999999862 1110 00000000000000000111 1233
Q ss_pred CCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CC----eEEEc-----------CCcEeeccE
Q 035902 245 GLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RN----EVEFE-----------NGKIEEFEA 305 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~----~v~~~-----------~g~~~~~D~ 305 (381)
+++....+...... ..+.+-..+....-+.+.++... ++.+- ++ ++..+ |.-.++++.
T Consensus 93 gI~ye~~e~g~~v~---ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~ 169 (262)
T COG1635 93 GIRYEEEEDGYYVA---DSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKA 169 (262)
T ss_pred CCcceecCCceEEe---cHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEE
Confidence 44433333211100 01111112222223334555554 33321 11 22221 334789999
Q ss_pred EEEecCCCCCcchhccccCCc-c-cccCCCCCCC--------CCCCCCCCCcEEEEeccccc--------cc--CccHHH
Q 035902 306 IIFATGYKSTVRNWLKRADKD-F-FDEYGMPKRN--------CPNHWKGENGLYCAGFSRTG--------LH--GISIDA 365 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~-~-~~~~g~~~~~--------~~~~~~~~~~ifa~Gd~~~~--------~~--~a~~~a 365 (381)
||-+||.....-.++. .... + .+-.|.-.-+ ...+..-.||+|++|-+.+. +. ....+|
T Consensus 170 VvDaTGHda~v~~~~~-kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSG 248 (262)
T COG1635 170 VVDATGHDAEVVSFLA-KRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSG 248 (262)
T ss_pred EEeCCCCchHHHHHHH-HhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhch
Confidence 9999999987755543 2111 0 1111110000 11333457999999976432 22 667899
Q ss_pred HHHHHHhhhcccc
Q 035902 366 KNIANDINLALTD 378 (381)
Q Consensus 366 ~~~a~~i~~~l~~ 378 (381)
+.+|+.|.+.|+.
T Consensus 249 kkaAe~i~e~L~~ 261 (262)
T COG1635 249 KKAAEEILEKLKL 261 (262)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988864
No 324
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.02 E-value=6.6e-06 Score=79.37 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=34.2
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
|+|||||.+|++||..|++.|++|+|+|+++.+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCc
Confidence 689999999999999999999999999999998883
No 325
>PLN02676 polyamine oxidase
Probab=98.02 E-value=1e-05 Score=77.16 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=39.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAY 47 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~ 47 (381)
.+||+|||||++|++||+.|+++|. +|+|+|+++.+||.+....+
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~ 71 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF 71 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC
Confidence 3799999999999999999999998 69999999999986554333
No 326
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.00 E-value=8.7e-05 Score=70.35 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=69.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||..|+-+|..+.+.|.+|+++++.... ..+.....
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~---------------------------------~~~~~~~~---- 315 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE---------------------------------DMTARVEE---- 315 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc---------------------------------cCCCCHHH----
Confidence 68999999999999999999999999999987510 00111111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---------ecC------CCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---------NTA------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.++..++ ++.. .|.+. ++. .+....+.+|.||+|+|..|...
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence 123456699999898888886533 2322 23332 110 12235799999999999987754
No 327
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.97 E-value=1.6e-05 Score=71.30 Aligned_cols=98 Identities=24% Similarity=0.317 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--------------CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--------------SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSR 69 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--------------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (381)
..++||||||.|+..|.+|+.. ..+|+++|..+.+=
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 4689999999999999999752 34888888776221
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 70 TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+ .-...+.+|.++++.+.++.+..++.|..+.. ....+.+.+| +.+.+.|-.||-|||..|.
T Consensus 269 -~--mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g---~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 269 -N--MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDG---EIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred -H--HHHHHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCC---ceeeecceEEEecCCCCCc
Confidence 0 01346778888888888999999999988764 3333444433 4578999999999999854
No 328
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.96 E-value=1.8e-05 Score=75.86 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999764
No 329
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.96 E-value=1.9e-05 Score=68.93 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
.+|+|||+|.+|++||+.|.++ .+|||||.+..+||.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 7899999999999999999865 789999999888773
No 330
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.96 E-value=1.3e-05 Score=73.85 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++||+|||||..|..||.-.+-+|+++.++|+++.-.|+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 389999999999999999999999999999998744443
No 331
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.95 E-value=8.1e-05 Score=72.47 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=66.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. ....+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-----------------------------------~~~~~~--- 185 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-----------------------------------CAKLIA--- 185 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-----------------------------------cCHHHH---
Confidence 679999999999999999999999999999875210 001111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE--EeCE----EEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY--VARY----LVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~--~~d~----vIlAtG~~~~~~ 143 (381)
....++.++++++++.|..+..++ +.-.+.+.+...++...+ .+|. ||+|+|..|+..
T Consensus 186 ~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~ 249 (555)
T TIGR03143 186 EKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE 249 (555)
T ss_pred HHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChh
Confidence 223344589999999999887432 221233322212222333 3666 999999998764
No 332
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.95 E-value=9.5e-06 Score=75.96 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
+++||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 5699999999999999999999999999999999999996654
No 333
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=1.3e-05 Score=69.16 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=36.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+|++|||||.+|+.+|..|++.|.+|.|||+.+++||.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 79999999999999999999999999999999999984
No 334
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.90 E-value=1.5e-05 Score=75.95 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=34.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+|+|||||++|++||+.|.++|.+|+|+|+.+.+||
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999988887
No 335
>PRK12831 putative oxidoreductase; Provisional
Probab=97.89 E-value=0.00017 Score=68.55 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=67.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 82 (381)
++|+|||||..|+-+|..|.+.|.+|+++++... ..++. ..++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~---------------------------------~~m~a~~~e~--- 325 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE---------------------------------EELPARVEEV--- 325 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc---------------------------------ccCCCCHHHH---
Confidence 6899999999999999999999999999987641 00111 1122
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---------ecC------CCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---------NTA------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+.|+++++++.+..+..+++ +.. .|.+. +|. .++...+.+|.||+|+|..|...
T Consensus 326 --~~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 399 (464)
T PRK12831 326 --HHAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL 399 (464)
T ss_pred --HHHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh
Confidence 123455999988888887765432 221 12221 110 12335799999999999997653
No 336
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.89 E-value=1.6e-05 Score=73.00 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=32.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 78999999999999999999999999999976544
No 337
>PLN02661 Putative thiazole synthesis
Probab=97.89 E-value=0.00012 Score=65.59 Aligned_cols=199 Identities=16% Similarity=0.201 Sum_probs=101.3
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhC-CCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccc
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSC-GACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFK 243 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~-g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.+...-+++|||+|.+|+-+|..|++. |.+|+++.+.. .+-.... .-...+..++-...... .+++
T Consensus 88 ~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~-~~GGG~~-~gg~l~~~~vv~~~a~e-----------~LeE 154 (357)
T PLN02661 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV-SPGGGAW-LGGQLFSAMVVRKPAHL-----------FLDE 154 (357)
T ss_pred hhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc-cccccee-eCcccccccccccHHHH-----------HHHH
Confidence 344556899999999999999999976 78999999876 2211000 00000000000000000 1223
Q ss_pred cCCCCCCCCCcccccccCCCccccchhhh-hhcCCCeEEccC--cceEeC--C---eEEEc------C--C------cEe
Q 035902 244 YGLERPKKGPFYFKAITGQTPTIDVGAMD-KIRKGEIQVFPS--ITSINR--N---EVEFE------N--G------KIE 301 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~--v~~v~~--~---~v~~~------~--g------~~~ 301 (381)
.+++..+.+.+... .....+...+.+ ..++.+++++.+ +..+-. + ++.+. + + ..+
T Consensus 155 lGV~fd~~dgy~vv---~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I 231 (357)
T PLN02661 155 LGVPYDEQENYVVI---KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVM 231 (357)
T ss_pred cCCCcccCCCeeEe---cchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEE
Confidence 34443332211110 011111122333 334578888887 454432 2 33321 1 1 268
Q ss_pred eccEEEEecCCCCCcchh-cc-ccCCccccc-CCCCCCC--------CCCCCCCCCcEEEEeccccc--------cc--C
Q 035902 302 EFEAIIFATGYKSTVRNW-LK-RADKDFFDE-YGMPKRN--------CPNHWKGENGLYCAGFSRTG--------LH--G 360 (381)
Q Consensus 302 ~~D~vi~a~G~~p~~~~~-~~-~~~~~~~~~-~g~~~~~--------~~~~~~~~~~ifa~Gd~~~~--------~~--~ 360 (381)
.++.||+|||-....-.. .. +...+...+ .|....+ .+.+..-.||+|++|-..+. +. .
T Consensus 232 ~AkaVVlATGh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~ 311 (357)
T PLN02661 232 EAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGA 311 (357)
T ss_pred ECCEEEEcCCCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHh
Confidence 999999999976543211 11 011222110 1111111 00222346999999976432 22 6
Q ss_pred ccHHHHHHHHHhhhccccC
Q 035902 361 ISIDAKNIANDINLALTDH 379 (381)
Q Consensus 361 a~~~a~~~a~~i~~~l~~~ 379 (381)
...+|+.+|+.|.+.|+..
T Consensus 312 m~~sg~k~a~~~~~~l~~~ 330 (357)
T PLN02661 312 MMISGQKAAHLALKALGLP 330 (357)
T ss_pred HHhhhHHHHHHHHHHHccc
Confidence 6789999999999988653
No 338
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.88 E-value=7.5e-05 Score=70.66 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..-+-..+...++.+|..++.++.|+++.... ++.+.|.+..| .+++.++|-|+|.+
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~G------~iet~~~VNaaGvW 242 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPHG------SIETECVVNAAGVW 242 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccCc------ceecceEEechhHH
Confidence 33444566677788999999999999998764 35556888776 69999999999987
No 339
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.85 E-value=2.1e-05 Score=71.59 Aligned_cols=39 Identities=36% Similarity=0.441 Sum_probs=37.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+.+||+|||||.+||++|+.|.+.|++|+|+|.++.+||
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 468999999999999999999999999999999998887
No 340
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.82 E-value=0.0001 Score=62.84 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC------CCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS------VPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g------~~v~lie~~~~~g 39 (381)
.++|+|+|||..|+++|+.|.+++ ..++|||...-.+
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 378999999999999999999986 6999999876333
No 341
>PLN02529 lysine-specific histone demethylase 1
Probab=97.82 E-value=2.5e-05 Score=77.18 Aligned_cols=39 Identities=36% Similarity=0.479 Sum_probs=36.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+++|+|||||++|++||..|+++|++|+|+|+++.+||.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 479999999999999999999999999999999888874
No 342
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.80 E-value=0.00022 Score=62.27 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~ 36 (381)
++||+|||||-.|.+.|+.|.++ |++|+++|+++
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 58999999999999999999775 78999999986
No 343
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.80 E-value=3.1e-05 Score=70.57 Aligned_cols=38 Identities=37% Similarity=0.453 Sum_probs=34.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~ 41 (381)
.+|+|||||.||++||.+|.+.|. .++|+|..+++||-
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 689999999999999999998766 89999999999883
No 344
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.79 E-value=3.4e-05 Score=71.51 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=67.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH-------------HHHHHHHhhC-cHHHHHHHHH-HHhh
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV-------------FAGMLLLKFL-PCKLVDFIVV-MLSK 235 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~-------------~~~~~~~~~l-~~~~~~~~~~-~~~~ 235 (381)
+|+|||+|++|+=+|..+++.|.+|.++.|.+. ....... +...+...+. ...+....+. +...
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~-~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR-VGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS-S-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc-cccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 589999999999999999999999999999872 2111000 0000000000 0011111111 1111
Q ss_pred hhhcCccccCCCCCCC-CCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CCe---EEEcCCcEeeccEEE
Q 035902 236 MKFGNLFKYGLERPKK-GPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RNE---VEFENGKIEEFEAII 307 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~~---v~~~~g~~~~~D~vi 307 (381)
-...-+.+.|+..... +...+. ...+...+-+.+...+++.+++++.+ |..+. +++ |.+++++++.+|.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP-~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFP-KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEE-TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECC-CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEE
Confidence 1111122334321111 111000 11122334455677778889999988 88885 344 555677899999999
Q ss_pred EecCCCCCc
Q 035902 308 FATGYKSTV 316 (381)
Q Consensus 308 ~a~G~~p~~ 316 (381)
+|+|-...+
T Consensus 160 LAtGG~S~p 168 (409)
T PF03486_consen 160 LATGGKSYP 168 (409)
T ss_dssp E----SSSG
T ss_pred EecCCCCcc
Confidence 999988654
No 345
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.78 E-value=2e-05 Score=63.83 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=75.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcCCCC-CCCeeeecCCccc-ccCCCCCCCCCCCC---C
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWKKRA-YDRMKLHLAKQFC-ELPHMPFPSRTPTF---V 74 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~ 74 (381)
+.||+|||+|.+|+++|+.+.++ +++|.|||.+-.+|| .|.-.. ++.|...-+.+.+ .....||.+. ..+ .
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYede-gdYVVVK 154 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDE-GDYVVVK 154 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccC-CCEEEEe
Confidence 36999999999999999999976 569999999877665 787543 3444444444332 2223333322 111 1
Q ss_pred CHHHHHH-HHHHHHHHhCCccccccEEEEEEEe-CCC---------CeEEEEEe-ecCC--CceEEEEeCEEEEccCCC
Q 035902 75 PRISFIN-YVDNYVSQMGINPRYHRSVESASYD-ENA---------KAWIIVAK-NTAL--DAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~-~~~---------~~~~v~~~-~~~~--~~~~~~~~d~vIlAtG~~ 139 (381)
....+.. .+...+...++.+.--+.+.++... .+. .+|++... ++.+ .++..+++..|+-+||-.
T Consensus 155 HAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGHD 233 (328)
T KOG2960|consen 155 HAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGHD 233 (328)
T ss_pred eHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCCC
Confidence 1122221 2233344445544333333332211 111 23655443 3333 345678888888888876
No 346
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.77 E-value=0.00033 Score=66.71 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=68.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+|+|||||..|+.+|..|.+.|. +|+++++.... .++.....
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~---------------------------------~~~~~~~~--- 317 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE---------------------------------EMPASEEE--- 317 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc---------------------------------cCCCCHHH---
Confidence 689999999999999999999988 89999876411 00111111
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEee---------c-----CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKN---------T-----ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---------~-----~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.+..+..++. +.-.|.+.. + ..+....+.+|.||+|+|..|..
T Consensus 318 -~~~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 318 -VEHAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred -HHHHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 2345567999999998888865431 111122221 0 01234679999999999999873
No 347
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.75 E-value=3.6e-05 Score=73.41 Aligned_cols=36 Identities=36% Similarity=0.369 Sum_probs=34.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+|+|||||++|+++|+.|.+.|++|+|+|+++.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999998887
No 348
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.75 E-value=3.9e-05 Score=74.64 Aligned_cols=38 Identities=32% Similarity=0.523 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--CCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--CSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--~~g~ 40 (381)
++||+|||+|.||++||..+++.|.+|+|+|+.. ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 5899999999999999999999999999999988 5555
No 349
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.72 E-value=9.2e-05 Score=66.21 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=74.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCCe-EEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL----SVPN-IILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~----g~~v-~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
..|.|||+|+-|..+|+.|.++ |.+| -+|+....++ -+-...
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiLPey 394 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KILPEY 394 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhhHHH
Confidence 5799999999999999999875 3343 3333322111 011223
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.++..+..++.|+.++-+..|.++..+. ++..+.+++| .+++.|.||+|+|..|+..
T Consensus 395 ls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~dG-----~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 395 LSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSDG-----SELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred HHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecCC-----CeeeeeeEEEEecCCCchh
Confidence 44555667788899999999999998876 7777889998 8999999999999998754
No 350
>PRK06847 hypothetical protein; Provisional
Probab=97.70 E-value=0.00016 Score=67.01 Aligned_cols=146 Identities=21% Similarity=0.190 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH----HHHHHHHhhCcHHHHHHHHHHH---hhhhhcCc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV----FAGMLLLKFLPCKLVDFIVVML---SKMKFGNL 241 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 241 (381)
.++|+|||+|++|+-+|..|++.|.+|+++.+.+. +.+.... .-...+.+.+. ..+.+.... ....+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~~g~g~~l~~~~~~~l~~~g--l~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE-WRVYGAGITLQGNALRALRELG--VLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC-CccCCceeeecHHHHHHHHHcC--CHHHHHHhCCCccceEEECC
Confidence 56899999999999999999999999999998873 2111000 11111111111 011111100 00000000
Q ss_pred cccC---CCCCCCC-CcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEEecC
Q 035902 242 FKYG---LERPKKG-PFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIFATG 311 (381)
Q Consensus 242 ~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~a~G 311 (381)
.... +..+... ..+.....-.++.+...+.+.+.+.+++++.+ +++++.+ .+.+.+|+++.+|.||.|+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 0000 0000000 00000001112233344555666667888776 7777542 35677898999999999999
Q ss_pred CCCCcc
Q 035902 312 YKSTVR 317 (381)
Q Consensus 312 ~~p~~~ 317 (381)
..+...
T Consensus 161 ~~s~~r 166 (375)
T PRK06847 161 LYSKVR 166 (375)
T ss_pred CCcchh
Confidence 877653
No 351
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.69 E-value=5e-05 Score=75.58 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=36.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
..+|+|||||++|++||+.|.+.|.+|+|+|++..+||.
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 478999999999999999999999999999999988874
No 352
>PLN02463 lycopene beta cyclase
Probab=97.69 E-value=0.00015 Score=68.32 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.-+++|||+|++|.-+|..|++.|.+|.++.+.+....|+...-.... .+.+. +.+.+...|......-...... .
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lg--l~~~l~~~w~~~~v~~~~~~~~-~ 103 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALG--LLDCLDTTWPGAVVYIDDGKKK-D 103 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCC--cHHHHHhhCCCcEEEEeCCCCc-c
Confidence 347999999999999999999999999999987632223211100001 11111 1111111121111000000000 0
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC----eEEEcCCcEeeccEEEEecCCCCC
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN----EVEFENGKIEEFEAIIFATGYKST 315 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 315 (381)
....... -.+..+...+.+.+.+.+++++.. |++++.+ .|.+++|+++++|.||.|+|....
T Consensus 104 ~~~~y~~-----V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 104 LDRPYGR-----VNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccCccee-----EEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0000000 011223334455556678888766 7777643 477789989999999999998764
No 353
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.69 E-value=0.00033 Score=62.90 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=78.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCCcCCCCCCCeeee--cCC---cccccCCC------CCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASLWKKRAYDRMKLH--LAK---QFCELPHM------PFPSR 69 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~~~~~~~~~~~~~--~~~---~~~~~~~~------~~~~~ 69 (381)
.|+|||+|-++..+-+.|... ..++..|-|+.-. ....|..+... .|. .++.++.- .....
T Consensus 189 ~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf----~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~ 264 (436)
T COG3486 189 SVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF----LPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRL 264 (436)
T ss_pred eEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC----CccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCc
Confidence 399999999999999999875 2245556665411 11112221111 000 01111100 00000
Q ss_pred CCCCCCHHHHHHHHHHHHH------HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 70 TPTFVPRISFINYVDNYVS------QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.-.-++.+.+.+.+..+.+ +.++.++.+++|+++....+ +.+.+.+.+...++.+++++|.||+|||.....|
T Consensus 265 ~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 265 LYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEecccccCCc
Confidence 0012233333332222222 23455678899999998764 5588999888888889999999999999997666
Q ss_pred CC
Q 035902 144 EV 145 (381)
Q Consensus 144 ~~ 145 (381)
.+
T Consensus 344 ~f 345 (436)
T COG3486 344 SF 345 (436)
T ss_pred hh
Confidence 43
No 354
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.68 E-value=5.2e-05 Score=72.54 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=36.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
+||+|||+||+|+.+|+.|++.|++|++||+....++.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999998777666
No 355
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.67 E-value=0.00077 Score=60.55 Aligned_cols=34 Identities=41% Similarity=0.634 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~ 36 (381)
.+||+|+||||.|.+.|..|... .+++.|+|...
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 58999999999999999999865 45999999873
No 356
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.65 E-value=0.0014 Score=66.45 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=67.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+-+|..+.+.|.+ |+++++.+.. .++. ...++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~------------------------------~~~~--~~~e~--- 615 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE------------------------------EMPA--RLEEV--- 615 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHH---
Confidence 6899999999999999999999987 9999976410 0011 11122
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---------ecC------CCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---------NTA------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+++.|+++++++.+..+..+++ +.. .+.+. ++. .+....+.+|.||+|+|..|...
T Consensus 616 --~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~ 689 (752)
T PRK12778 616 --KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL 689 (752)
T ss_pred --HHHHHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc
Confidence 224556899888888877765431 221 12221 110 12345799999999999997653
No 357
>PLN02487 zeta-carotene desaturase
Probab=97.63 E-value=6.7e-05 Score=72.53 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=35.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++|+|||||++|+++|+.|.+.|++|+|+|+.+.+||.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~ 113 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGK 113 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCc
Confidence 58999999999999999999999999999999988874
No 358
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.61 E-value=0.00071 Score=64.63 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=66.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+-+|..+.+.|. +|++++.....+..+ . ....++.++.. .
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~---------------------~-~~~~~~~~~~~-----~ 334 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR---------------------N-KNNPWPYWPMK-----L 334 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc---------------------c-cccCCcccchH-----H
Confidence 679999999999999999888876 788776554211000 0 00000111111 1
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEe-----ec----CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAK-----NT----ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~-----~~----~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+.+.+.|+.+++++.+.++..++ +... |... ++ ..++.+.+.+|.||+|+|..|..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~ 402 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE 402 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCc
Confidence 1233455689999998888886432 3321 2222 11 11334679999999999988753
No 359
>PLN02612 phytoene desaturase
Probab=97.61 E-value=8.2e-05 Score=72.48 Aligned_cols=38 Identities=39% Similarity=0.536 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
.++|+|||||++|+++|+.|.++|.+++|+|+.+.+||
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 37899999999999999999999999999999887777
No 360
>PRK06834 hypothetical protein; Provisional
Probab=97.60 E-value=0.00023 Score=68.15 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce--echhhH--HHHHHHHhhCcHHHHHHHHHHHhhhhhcCcccc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV--LTREIV--FAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKY 244 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~--~p~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+... -++... .-...+.+.+. ..+.+...-...........
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lG--l~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRG--IADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcC--cHHHHHhcCCccccceeeeE
Confidence 3579999999999999999999999999999987321 111110 11111111111 11111110000000000000
Q ss_pred CCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCCcEeeccEEEEecCCCCCcc
Q 035902 245 GLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
.+................++.+...+.+.+++.+++++.+ ++.+..+ + +.+.+|+++.+|.||.|.|..+...
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 0100000000000000112233344455666678888877 7776543 3 4556788899999999999877553
No 361
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00027 Score=61.47 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=33.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
|++..|-|||||.||..+|++++++|.+|.|+|-.+.
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 5667899999999999999999999999999997753
No 362
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.59 E-value=6.7e-05 Score=67.12 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS-VPNIILEREDC 37 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~ 37 (381)
||++|||+|++|..+|.+|++.+ .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999997 69999999863
No 363
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.58 E-value=0.00024 Score=64.72 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=67.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce--echhhH-------HHHHHHHhhCcHHHHHHHHHHHhhhhhcCc
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV--LTREIV-------FAGMLLLKFLPCKLVDFIVVMLSKMKFGNL 241 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~--~p~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+|||||..|+|+|..+++.|.+|.++......+ ++.... .+...+ ..+........ .. ..+ ..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Ei-dalgg~m~~~a-D~--~~i--~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREI-DALGGLMGRAA-DE--TGI--HF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHH-HHTT-SHHHHH-HH--HEE--EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHH-hhhhhHHHHHH-hH--hhh--hh
Confidence 48999999999999999999999999994332121 111100 111111 01111111100 00 000 00
Q ss_pred cccCCCC-CCCCCcccccccCCCccccchhhhhhcC-CCeEEccC-cceEeCC-----eEEEcCCcEeeccEEEEecCC
Q 035902 242 FKYGLER-PKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS-ITSINRN-----EVEFENGKIEEFEAIIFATGY 312 (381)
Q Consensus 242 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~ 312 (381)
+..+..+ |....+ .....+..+...+.+.+++ .+++++.. |+.+..+ +|.+.+|+.+.+|.||+|||.
T Consensus 75 ~~lN~skGpav~a~---r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 75 RMLNRSKGPAVHAL---RAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEESTTS-GGCTEE---EEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hcccccCCCCccch---HhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 1100000 000000 0001112233344555665 78999888 8887542 688899999999999999999
No 364
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.56 E-value=0.0013 Score=62.65 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=66.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++++|||+|..|+.+|..+.+.|. +|+|+++.+... . +. ...++
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~------------------------~------~~--~~~e~--- 327 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN------------------------M------PG--SRREV--- 327 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc------------------------C------CC--CHHHH---
Confidence 679999999999999999999986 799999865210 0 00 11122
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---e------c------CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---N------T------ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---~------~------~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.+.|+++++++.+..+..+++ +.. .|++. . + ..++...+.+|.||+|+|..|..
T Consensus 328 --~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 400 (467)
T TIGR01318 328 --ANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA 400 (467)
T ss_pred --HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc
Confidence 234556899999988888865431 221 12221 1 1 01234679999999999998764
No 365
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.56 E-value=0.00071 Score=70.37 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+|+|||+|+.|+.+|..|++.|. .|+|+|..+.+ ...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~~ 356 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SPE 356 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hHH
Confidence 589999999999999999999996 57899876411 112
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+++.++.++.++.+..+..++ ..-.|.+... .++.+.+.+|.|+++.|..|+..
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~~--~v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pnt~ 414 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGGK--RVSGVAVARN-GGAGQRLEADALAVSGGWTPVVH 414 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecCC--cEEEEEEEec-CCceEEEECCEEEEcCCcCchhH
Confidence 3345667799999999998886533 2112444321 11236799999999999998754
No 366
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.54 E-value=9.1e-05 Score=62.03 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+++|||+|+.|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996655
No 367
>PLN03000 amine oxidase
Probab=97.50 E-value=0.00016 Score=72.28 Aligned_cols=40 Identities=33% Similarity=0.393 Sum_probs=37.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
.++|+|||||++|+.+|..|.+.|.+|+|+|+.+.+||.+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 3789999999999999999999999999999999998844
No 368
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.49 E-value=0.0016 Score=64.86 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=66.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+-+|..+.+.|. +|+++.+.+... ++.....
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~---------------------------------~~~~~~e--- 512 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN---------------------------------MPGSKKE--- 512 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC---------------------------------CCCCHHH---
Confidence 579999999999999999999986 699998764210 1111111
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe---------ecC------CCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK---------NTA------LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+.+.|+++++++.+.++..++++..-.|.+. +|. .++...+.+|.||+|.|..|..
T Consensus 513 -~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 586 (654)
T PRK12769 513 -VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHG 586 (654)
T ss_pred -HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCc
Confidence 1235556999988888887764332221112321 111 1234579999999999998764
No 369
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.48 E-value=0.0013 Score=61.12 Aligned_cols=38 Identities=32% Similarity=0.284 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~ 40 (381)
+++.=|||+|.|+|++|..|.+- |.+|+|+|+.+..||
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 35678999999999999999886 559999999876665
No 370
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.48 E-value=0.0036 Score=62.23 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=66.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+.+|..+.+.|. +|+|+.+.... ..+. ...++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~------------------------------~mpa--~~~ei~~- 370 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE------------------------------EMPA--NRAEIEE- 370 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHHHH-
Confidence 689999999999999999999987 59999876410 0011 1223322
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEE---EeecC------------CCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIV---AKNTA------------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~---~~~~~------------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
. .+.|+.+++++.+.++..++ +...+. +..+. .+....+.+|.||+|+|..|...
T Consensus 371 ---a-~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ 440 (652)
T PRK12814 371 ---A-LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP 440 (652)
T ss_pred ---H-HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc
Confidence 2 23489998888887776543 221121 22211 12345799999999999987643
No 371
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.48 E-value=0.00021 Score=73.39 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+. +- .+-+++++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~-~G---------------------------------G~l~yGIP 350 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD-LG---------------------------------GVLRYGIP 350 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC-CC---------------------------------ceEEccCC
Confidence 589999999999999999999999999999998761 10 11112221
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecCCC-CC
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYK-ST 315 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~-p~ 315 (381)
..+.+ ..+-+...+.+++.+++++.++. .+..+.+++.....+|.||+|||.. |.
T Consensus 351 ~~rlp-----------~~vi~~~i~~l~~~Gv~f~~n~~--vG~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 351 EFRLP-----------NQLIDDVVEKIKLLGGRFVKNFV--VGKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred CCcCh-----------HHHHHHHHHHHHhhcCeEEEeEE--eccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 10000 00111224556667888776611 1234666666667899999999994 54
No 372
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.46 E-value=0.00016 Score=65.12 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC--eEEEecCCCCCCCc
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP--NIILEREDCSASLW 42 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~--v~lie~~~~~g~~~ 42 (381)
.+|+|+|||.+|+++|++|++++.+ ++|+|..+.+||-.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 7899999999999999999999764 56799999999843
No 373
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.46 E-value=8.3e-05 Score=62.44 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=24.6
Q ss_pred EEEcCCCCHHHHHHHHhhCCCe-eEEEEecC
Q 035902 173 LVVGCGNSGMEIAYDLSSCGAC-TSIVVRGP 202 (381)
Q Consensus 173 ~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~ 202 (381)
+|||+|++|+-+|..|.+.|.+ |.++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999998 99999986
No 374
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.44 E-value=0.00021 Score=67.77 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhh--CCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSS--CGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~--~g~~v~~i~r~~ 202 (381)
.+++|+|||+|+.|+.+|..|++ .|.+|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 57899999999999999999986 689999999988
No 375
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.42 E-value=0.0012 Score=57.20 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~ 38 (381)
++|+||||||..|++.|.+|.-+ +.+|.|+|++..+
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 58999999999999999998877 7899999998644
No 376
>PLN02976 amine oxidase
Probab=97.41 E-value=0.00019 Score=74.61 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=38.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
++|+|||||++|+++|+.|.+.|++|+|+|+...+||.+..
T Consensus 694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 78999999999999999999999999999999999986544
No 377
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.29 E-value=0.00075 Score=62.99 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCccee-ch-------hhHHHHHHHHhhCcHHHHHHHHHH----Hhhh
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL-TR-------EIVFAGMLLLKFLPCKLVDFIVVM----LSKM 236 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~-p~-------~~~~~~~~~~~~l~~~~~~~~~~~----~~~~ 236 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.|.+.... +. ....-...+.+.+.. .+.+... ....
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGV--WPAVRAARAQPYRRM 83 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCc--hhhhhHhhCCcccEE
Confidence 45799999999999999999999999999999862100 00 001111122222211 1111110 0000
Q ss_pred hhcCcc---ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEE
Q 035902 237 KFGNLF---KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAII 307 (381)
Q Consensus 237 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi 307 (381)
...+.. ...+.....+..... ....+..+...+.+.+++.+++++.+ ++++..+ .+.+++|+++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 162 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLG-WIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAI 162 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCE-EEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEE
Confidence 000000 000000000000000 00112233444566677778888877 7776543 3556788899999999
Q ss_pred EecCCCCCcc
Q 035902 308 FATGYKSTVR 317 (381)
Q Consensus 308 ~a~G~~p~~~ 317 (381)
.|.|......
T Consensus 163 ~AdG~~S~vr 172 (392)
T PRK08773 163 AADGAASTLR 172 (392)
T ss_pred EecCCCchHH
Confidence 9999987653
No 378
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.28 E-value=0.00061 Score=65.38 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++++|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999999999998765
No 379
>PRK05868 hypothetical protein; Validated
Probab=97.27 E-value=0.0012 Score=61.16 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|+|||+|+.|+-+|..|++.|.+|+++.+++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 579999999999999999999999999999987
No 380
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.26 E-value=0.0028 Score=64.81 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=62.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-C-CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-S-VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g-~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
++|+|||||..|+-+|..+.+. | .+|+++.+.... ..+. ...++..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~------------------------------~MPA--~~eEle~ 716 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQ------------------------------EMPA--WREEYEE 716 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcc------------------------------cccc--cHHHHHH
Confidence 6899999999999999998887 4 389999986410 0010 1223333
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEE---Ee----ec-----CCCceEEEEeCEEEEccCCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIV---AK----NT-----ALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~---~~----~~-----~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+ +.|+++++.+.+..+..+ +...+. +. ++ ..++...+.+|.||+|+|..|...
T Consensus 717 Al-----eeGVe~~~~~~p~~I~~d---G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnte 782 (1019)
T PRK09853 717 AL-----EDGVEFKELLNPESFDAD---GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTE 782 (1019)
T ss_pred HH-----HcCCEEEeCCceEEEEcC---CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChh
Confidence 22 348888887777777431 111110 00 00 012346799999999999997654
No 381
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.25 E-value=0.00074 Score=65.21 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.|+|||||+.|+++|..+++.|.+|.++++..
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 469999999999999999999999999999874
No 382
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.25 E-value=0.00089 Score=62.39 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=69.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPK 250 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
+++|||+|+.|+-+|..|++.|.+|.++.+.+....+....-....+. .+. +.+.+...|............. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~---~ 74 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLS-DLG--LADCVEHVWPDVYEYRFPKQPR---K 74 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhh-hhc--hhhHHhhcCCCceEEecCCcch---h
Confidence 489999999999999999999999999998763211111000000000 000 0011111111100000000000 0
Q ss_pred CCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC-----eEEEcCCcEeeccEEEEecCCCC
Q 035902 251 KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN-----EVEFENGKIEEFEAIIFATGYKS 314 (381)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p 314 (381)
....+ ..-.+..+...+.+.+.+.+++++.. +..+..+ .+.+++|+++.++.||.|+|..+
T Consensus 75 ~~~~~---~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 75 LGTAY---GSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCce---eEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00000 00111223334455556667787766 6666433 35667888999999999999766
No 383
>PRK02106 choline dehydrogenase; Validated
Probab=97.25 E-value=0.00035 Score=68.33 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHh-CCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNN-LSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie~~~ 36 (381)
++|++|||||++|+.+|..|++ .|.+|+|+|+..
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4899999999999999999999 799999999985
No 384
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.004 Score=55.46 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=71.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||-+++..|+.|.+.+.+|+++-+.+.+- .. +.+
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~~ 184 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EIL 184 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HHH
Confidence 689999999999999999999999999998876321 11 222
Q ss_pred HHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++. ++.+++++.+..+.-++ -.. |.+.+.. ++...+.+|.++++.|..|..
T Consensus 185 ~~~l~~~~~i~~~~~~~i~ei~G~~-v~~--v~l~~~~-~~~~~~~~~gvf~~iG~~p~~ 240 (305)
T COG0492 185 VERLKKNVKIEVLTNTVVKEILGDD-VEG--VVLKNVK-GEEKELPVDGVFIAIGHLPNT 240 (305)
T ss_pred HHHHHhcCCeEEEeCCceeEEecCc-cce--EEEEecC-CceEEEEeceEEEecCCCCch
Confidence 3333333 78889999998886543 122 6666543 455789999999999999775
No 385
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.23 E-value=0.00048 Score=64.12 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHH-HHHHHHHh----hhhhcCcc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLV-DFIVVMLS----KMKFGNLF 242 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~-~~~~~~~~----~~~~~~~~ 242 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+..+.+.. -..+.....+.|..-.. +.+..... .....+-.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 35799999999999999999999999999999832333221 11111112222211111 22211000 00000000
Q ss_pred --ccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC----eEEEc-CCcEeeccEEEEecCC
Q 035902 243 --KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN----EVEFE-NGKIEEFEAIIFATGY 312 (381)
Q Consensus 243 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~----~v~~~-~g~~~~~D~vi~a~G~ 312 (381)
...+.....+. ......-.+..+...+++.+.+ .+++++.+ |+.++.+ .+.+. +|+++.||.+|-|-|.
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 82 RRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred ceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCC
Confidence 00000000000 0000111123444556677665 45899887 8887654 36777 9999999999999986
Q ss_pred CCC
Q 035902 313 KST 315 (381)
Q Consensus 313 ~p~ 315 (381)
...
T Consensus 161 ~S~ 163 (387)
T COG0654 161 NSA 163 (387)
T ss_pred chH
Confidence 543
No 386
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.22 E-value=0.00084 Score=61.92 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
.++|||+|..|+.+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 479999999999999999987 89999999876
No 387
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.21 E-value=0.00065 Score=63.49 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+.+|+|||+|..|+-+|..|++.|.+|+++.|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 5789999999999999999999999999999987
No 388
>PRK08244 hypothetical protein; Provisional
Probab=97.20 E-value=0.0011 Score=63.81 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 469999999999999999999999999999987
No 389
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.20 E-value=0.00081 Score=62.64 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 469999999999999999999999999999987
No 390
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.15 E-value=0.0008 Score=59.95 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+++|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999987
No 391
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.15 E-value=0.0016 Score=61.00 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999886
No 392
>PRK07236 hypothetical protein; Provisional
Probab=97.15 E-value=0.0021 Score=59.78 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|.+|+.+|..|++.|.+|+++.|.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45789999999999999999999999999999987
No 393
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.13 E-value=0.022 Score=56.64 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=65.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||+|..|+-+|..+.+.|. +|+++.+.+... ++. ...++..
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~------------------------------~~~--~~~e~~~- 498 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS------------------------------MPG--SRKEVVN- 498 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc------------------------------CCC--CHHHHHH-
Confidence 689999999999999999888885 799998764210 010 1123322
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEE---ee------cC------CCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVA---KN------TA------LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~---~~------~~------~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.|+++++++.+..+..+++ +.. .+.+ .. |. .+....+.+|.||+|.|..|..
T Consensus 499 ----a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~ 569 (639)
T PRK12809 499 ----AREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA 569 (639)
T ss_pred ----HHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc
Confidence 3456999998888888764431 221 1221 11 10 1234679999999999988653
No 394
>PRK06184 hypothetical protein; Provisional
Probab=97.12 E-value=0.002 Score=62.14 Aligned_cols=34 Identities=29% Similarity=0.665 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.-+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999999987
No 395
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.12 E-value=0.0022 Score=56.43 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=77.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++++|||||+.++..|--++-.|.++.++=|.+.+- .. -.+.+.+.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL----------------------R~-----------FD~~i~~~ 235 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL----------------------RG-----------FDEMISDL 235 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh----------------------cc-----------hhHHHHHH
Confidence 3789999999999999999999999998887765210 00 12345566
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
+.+.++.-+++++.++.++.+....+ +...+...++ .....|.|+.|+|-.|+...+
T Consensus 236 v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~-----~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 236 VTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHG-----TIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred HHHHhhhcceeecccccceeeeecCC-CceEEEEecc-----ccccccEEEEEecCCCCcccc
Confidence 66667777999999999999887653 4344555554 445699999999999887654
No 396
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.11 E-value=0.0013 Score=62.45 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 789999999999999999999999999998864
No 397
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.08 E-value=0.00083 Score=62.13 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=72.3
Q ss_pred eEEEEcCCCCHHHHHHHH--hhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDL--SSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l--~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.++|||+|+.|.-+|..| +..|.+|.++.+.+....+... .-......+. .+.+.+...|..+.......... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~--tW~~~~~~~~-~~~~~v~~~w~~~~v~~~~~~~~-~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR--TWCFWEKDLG-PLDSLVSHRWSGWRVYFPDGSRI-L 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc--cccccccccc-chHHHHheecCceEEEeCCCceE-E
Confidence 479999999999999999 7788999999987733112111 0001111000 01111112221111100000000 0
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC----eEEEcCCcEeeccEEEEecCCCCC
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN----EVEFENGKIEEFEAIIFATGYKST 315 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 315 (381)
...... .-.+..+...+.+.+...++.++.. |++++.+ .+.+.+|+++.++.||-|.|..+.
T Consensus 77 ~~~~Y~-----~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYC-----MIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceE-----EEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 000000 0011223333455555556666666 8888765 357889999999999999997654
No 398
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.08 E-value=0.004 Score=57.03 Aligned_cols=57 Identities=9% Similarity=0.009 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+...+.+.+...+++.++.++++++|.++ ++ +.|.+.+..+ ...+++|+||+|||..
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~~----~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPDG----QSTIEADAVVLALGGA 140 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECCC----ceEEecCEEEEcCCCc
Confidence 56789999999999999999999999999 22 3477776432 1469999999999985
No 399
>PRK09126 hypothetical protein; Provisional
Probab=97.07 E-value=0.0017 Score=60.52 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
No 400
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.06 E-value=0.0021 Score=60.26 Aligned_cols=144 Identities=18% Similarity=0.147 Sum_probs=75.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecCcceechhh------HHHHHHHHhhCcHHHHHHHHHHH---hhhhhc
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGPVHVLTREI------VFAGMLLLKFLPCKLVDFIVVML---SKMKFG 239 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~------~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~ 239 (381)
+|+|||+|+.|+-+|..|++.| .+|+++.+.+. ..+... ..-+..+.+.+.. .+.+.... ....+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~-~~~~~~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA-GAWSRDPRASAIAAAARRMLEALGV--WDEIAPEAQPITDMVIT 79 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc-ccCCCCcceEEecHHHHHHHHHCCC--hhhhhhhcCcccEEEEE
Confidence 5899999999999999999986 89999999872 211110 0112222222211 11111100 000000
Q ss_pred CccccCCCCC---CCCC----cccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEE
Q 035902 240 NLFKYGLERP---KKGP----FYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAI 306 (381)
Q Consensus 240 ~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~v 306 (381)
+......... .... .......-.+..+...+.+.+.+.+++++.+ +++++.+ .+.+++|+++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 0000000000 0000 0000000112234445566666678888877 7777543 356678889999999
Q ss_pred EEecCCCCCcc
Q 035902 307 IFATGYKSTVR 317 (381)
Q Consensus 307 i~a~G~~p~~~ 317 (381)
|.|.|......
T Consensus 160 I~AdG~~S~vr 170 (403)
T PRK07333 160 VAADGARSKLR 170 (403)
T ss_pred EEcCCCChHHH
Confidence 99999876543
No 401
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.06 E-value=0.0018 Score=60.18 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|.-+|..|++.|.+|++++|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 48999999999999999999999999999997
No 402
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.05 E-value=0.0088 Score=62.27 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=64.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (381)
++|+|||||..|+-+|..+.+.|.+ |+++.+.... ..+. ..++
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~---------------------------------em~a~~~e~-- 616 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA---------------------------------EAPARIEEI-- 616 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc---------------------------------cCCCCHHHH--
Confidence 6899999999999999999999884 7777765310 0111 1111
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEee---------c-----CCCceEEEEeCEEEEccCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKN---------T-----ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~---------~-----~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.+.|+++++++.+..+..+++ +.. .+.+.. | ..++...+.+|.||+|.|..|..
T Consensus 617 ---~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 617 ---RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred ---HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh
Confidence 224556999988888877754332 221 122211 1 01233579999999999999774
No 403
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.04 E-value=0.0013 Score=66.45 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 368999999999999999999999999999999764
No 404
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.03 E-value=0.0016 Score=60.58 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=73.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecCcceechh------h--HHHHHHHHhhCcHHHHHHHHHHHh---hhhh
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGPVHVLTRE------I--VFAGMLLLKFLPCKLVDFIVVMLS---KMKF 238 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~~~~~p~~------~--~~~~~~~~~~l~~~~~~~~~~~~~---~~~~ 238 (381)
+|+|||+|++|+-+|..|++.| .+|+++.|.+. .-+.. . ..-...+.+.+.. .+.+..... ...+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~-~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP-SAAQPGFDARSLALSYGSKQILEKLGL--WPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc-cccCCCCCCeeEeccHHHHHHHHHCCC--hhhhHhhcCccceEEE
Confidence 4899999999999999999999 99999999872 22210 0 0111122222211 111111000 0000
Q ss_pred cCccccCCC---CCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeC--C--eEEEcCCcEeeccEEEE
Q 035902 239 GNLFKYGLE---RPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINR--N--EVEFENGKIEEFEAIIF 308 (381)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~--~--~v~~~~g~~~~~D~vi~ 308 (381)
.+....+.. ....+... ....-.+..+...+.+.+.+ .+++++.+ ++++.. + .+.+++|+++.+|.||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~ 156 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPA-LGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIA 156 (382)
T ss_pred EcCCCCceEEechhhcCCCc-cEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEE
Confidence 000000000 00000000 00001122333445555665 48888866 777753 3 35667888899999999
Q ss_pred ecCCCCC
Q 035902 309 ATGYKST 315 (381)
Q Consensus 309 a~G~~p~ 315 (381)
|.|....
T Consensus 157 AdG~~S~ 163 (382)
T TIGR01984 157 ADGANSK 163 (382)
T ss_pred ecCCChH
Confidence 9997653
No 405
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.01 E-value=0.0011 Score=63.19 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|+|+|..|+.+|..|++.|.+|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45889999999999999999999999999999864
No 406
>PRK06753 hypothetical protein; Provisional
Probab=97.00 E-value=0.0025 Score=59.02 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=30.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||||++|+-+|..|++.|.+|+++.|++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999988
No 407
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.99 E-value=0.018 Score=55.24 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
++|+|||||..|+.+|..+.+.+. +|+++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 689999999999999988888875 799998765
No 408
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.99 E-value=0.013 Score=60.39 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=61.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-SV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
++|+|||||..|+-+|..+.+. |. +|+++.+...- ..+. ...++..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~------------------------------~Mpa--~~eEl~~ 714 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKR------------------------------YMPA--SREELEE 714 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcc------------------------------cccc--CHHHHHH
Confidence 6899999999999999998876 75 79999986510 0010 1123322
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-------ec-----CCCceEEEEeCEEEEccCCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-------NT-----ALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-------~~-----~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.. +.|+.++....+..+. + +...+... ++ ..++...+.+|.||+|+|..|...
T Consensus 715 ----al-eeGVe~~~~~~p~~I~--~--g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~ 779 (1012)
T TIGR03315 715 ----AL-EDGVDFKELLSPESFE--D--GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTD 779 (1012)
T ss_pred ----HH-HcCCEEEeCCceEEEE--C--CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChH
Confidence 22 3488887777666664 1 11111100 00 012345799999999999987643
No 409
>PRK08013 oxidoreductase; Provisional
Probab=96.96 E-value=0.0027 Score=59.37 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=31.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
.+|+|||+|+.|.-+|..|++.|.+|+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999999873
No 410
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.96 E-value=0.0012 Score=63.01 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|||.|++|+++|..|+++|.+|+++|++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999875
No 411
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.002 Score=56.40 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
-+-+|||||+.++.||-.|.-.|+++++.-|+-.+.| | .+++.+.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG-----------------------F-----------Dqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG-----------------------F-----------DQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc-----------------------c-----------cHHHHHHH
Confidence 3678999999999999999999999999988753221 1 24677777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
.+.++..|+.+...+....++..+ .+.+.|...+...++...-.||.|+.|.|-.+...++
T Consensus 245 ~~~m~~~Gikf~~~~vp~~Veq~~-~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l 305 (503)
T KOG4716|consen 245 AEHMEERGIKFLRKTVPERVEQID-DGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL 305 (503)
T ss_pred HHHHHHhCCceeecccceeeeecc-CCcEEEEeecccccccccchhhhhhhhhccccchhhc
Confidence 788888899987777777776655 3556777666555555567899999999988665544
No 412
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.94 E-value=0.0015 Score=63.03 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
..-+|||||.-|+.+|..|...|.+++++.-.+.+. .... ...-...|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-------------------------------erQL-D~~ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-------------------------------ERQL-DRTAGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH-------------------------------HHhh-hhHHHHHH
Confidence 346899999999999999999999999997654211 0000 01122355
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+...++.|+.+++++..+.+.... ..-.+.+++| ..+.+|.||.|+|.+|+.
T Consensus 194 ~~~le~~Gi~~~l~~~t~ei~g~~--~~~~vr~~DG-----~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 194 RRKLEDLGIKVLLEKNTEEIVGED--KVEGVRFADG-----TEIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHHHhhcceeecccchhhhhcCc--ceeeEeecCC-----CcccceeEEEeccccccc
Confidence 667777899988877666655432 3344788887 789999999999999875
No 413
>PRK07588 hypothetical protein; Provisional
Probab=96.93 E-value=0.0021 Score=59.98 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||||+.|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 68999999999999999999999999999987
No 414
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.92 E-value=0.0022 Score=59.94 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=70.8
Q ss_pred EEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-----------hhHHHHHHHHhhCcH--HHHHHHHHHH-hhhhh
Q 035902 173 LVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-----------EIVFAGMLLLKFLPC--KLVDFIVVML-SKMKF 238 (381)
Q Consensus 173 ~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-----------~~~~~~~~~~~~l~~--~~~~~~~~~~-~~~~~ 238 (381)
+|||+|++|+-+|..+++.|.+|.++.+.+. +-.. ........+..+.+. .+....+..+ .....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~-~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK-IGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc-ccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 5899999999999999999999999998772 2110 000001111111111 1111111110 01111
Q ss_pred cCccccCCCCCC--CCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCCcEeeccEEEEec
Q 035902 239 GNLFKYGLERPK--KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g~~~~~D~vi~a~ 310 (381)
.-+...++.... .+..+. .......+...+.+.+++.+++++.+ ++++..+ . +.. +++++.+|.||+|+
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p--~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAt 156 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFP--CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILAT 156 (400)
T ss_pred HHHHHcCCeeEEecCCEeEC--CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECC
Confidence 111222322111 111000 01111233344566677778888877 7776542 2 333 56689999999999
Q ss_pred CCCC
Q 035902 311 GYKS 314 (381)
Q Consensus 311 G~~p 314 (381)
|...
T Consensus 157 G~~s 160 (400)
T TIGR00275 157 GGLS 160 (400)
T ss_pred CCcc
Confidence 9764
No 415
>PRK07190 hypothetical protein; Provisional
Probab=96.91 E-value=0.0041 Score=59.60 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 479999999999999999999999999999987
No 416
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.91 E-value=0.0016 Score=61.09 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHh-hCCCeeEEEEecCc
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLS-SCGACTSIVVRGPV 203 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~-~~g~~v~~i~r~~~ 203 (381)
.+++|+|||+|++|+.+|..|. +.|.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5789999999999999999765 67899999999883
No 417
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.88 E-value=0.0026 Score=61.34 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|.+|.-.|..|.+...+|++.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 3789999999999999999999888998887764
No 418
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.87 E-value=0.0032 Score=58.74 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 579999999999999999999999999999875
No 419
>PRK09897 hypothetical protein; Provisional
Probab=96.86 E-value=0.0052 Score=59.14 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~ 202 (381)
++|+|||+|++|+-++..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 589999999999999999987654 799999865
No 420
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.86 E-value=0.0019 Score=60.85 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|+.|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 479999999999999999999999999999986
No 421
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.82 E-value=0.0061 Score=48.73 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.8
Q ss_pred EEEcCCCCHHHHHHHHhhCC-----CeeEEEEecC
Q 035902 173 LVVGCGNSGMEIAYDLSSCG-----ACTSIVVRGP 202 (381)
Q Consensus 173 ~viG~G~~~~e~a~~l~~~g-----~~v~~i~r~~ 202 (381)
+|||+|++|+-++..|.+.. .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999873 4799999865
No 422
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.81 E-value=0.011 Score=56.01 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..-+|+|||+|+.|+-+|..|++.|.+|.++.+++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34589999999999999999999999999999886
No 423
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.79 E-value=0.0041 Score=57.88 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|.-+|..|++.|.+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 379999999999999999999999999999875
No 424
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.78 E-value=0.0041 Score=58.12 Aligned_cols=32 Identities=41% Similarity=0.527 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|.++.|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999876
No 425
>PRK13984 putative oxidoreductase; Provisional
Probab=96.76 E-value=0.067 Score=53.00 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=59.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC------CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCC-CH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV------PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFV-PR 76 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~------~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (381)
++|+|||||..|+-+|..|.+.+. +|+++...... ..++ ..
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~--------------------------------~~~~~~~ 466 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTF--------------------------------EEMPADM 466 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCc--------------------------------ccCCCCH
Confidence 689999999999999999988743 56666422100 0011 11
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEee--------c------CCCceEEEEeCEEEEccCCCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKN--------T------ALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~--------~------~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.++.+ +.+.|++++++..+..+..++ +.. .|.+.. + ..+....+.+|.||+|+|..|.
T Consensus 467 ~e~~~-----~~~~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 467 EEIEE-----GLEEGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred HHHHH-----HHHcCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 22222 224588888776666654322 211 122211 1 0123457999999999999976
Q ss_pred CC
Q 035902 142 IP 143 (381)
Q Consensus 142 ~~ 143 (381)
..
T Consensus 540 ~~ 541 (604)
T PRK13984 540 YS 541 (604)
T ss_pred hh
Confidence 44
No 426
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.73 E-value=0.00079 Score=63.47 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=26.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||||+.|+-+|..+++.|.+|.++.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 48999999999999999999999999999988
No 427
>PLN02785 Protein HOTHEAD
Probab=96.73 E-value=0.0018 Score=63.18 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.||++|||||.||+.+|..|.+ +.+|+|+|+..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 4899999999999999999998 68999999986
No 428
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0016 Score=63.12 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|++|||+|.+|..+|..|...|.+|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 5999999999999999999998899999999883
No 429
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.72 E-value=0.0015 Score=63.53 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~ 36 (381)
|++|||||.||+.+|..|++.+ .+|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999975
No 430
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.71 E-value=0.014 Score=54.54 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=66.0
Q ss_pred EEECCCHHHHHHH-HHHH----hCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 7 VIVGAGPAGLATS-ACLN----NLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 7 vIIGaG~aG~~~A-~~l~----~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+|++.|+.|+..+ ..+. +.|.+|++++..+ + ..+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~p----------------------------------p-slpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLP----------------------------------P-SVPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCC----------------------------------C-CCchHHHHH
Confidence 5678888888887 4343 3589999997654 1 112236778
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEE-EEeecCCCceEEEEeCEEEEccCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWII-VAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+.+.+++.+++++.+++|.++...+ +.... ...++ +...+++|.||+|+|..
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g---~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNH---GDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCC---ceEEEECCEEEEeCCCc
Confidence 88888888899999999999998765 33222 22222 34579999999999986
No 431
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.70 E-value=0.01 Score=55.58 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 357999999999999999999999999999986
No 432
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0082 Score=56.73 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~ 202 (381)
...+++|||+|++|+-+|..|.+.|.. +.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 356899999999999999999999987 99999886
No 433
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.64 E-value=0.0061 Score=56.47 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 68999999999999999999999999999864
No 434
>PLN02697 lycopene epsilon cyclase
Probab=96.64 E-value=0.0015 Score=62.75 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=71.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.-+++|||+|+.|+-+|..+++.|.+|.++.+...+..+.... ....+.+. +.+.+...|............+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW---~~~l~~lg--l~~~i~~~w~~~~v~~~~~~~~~- 181 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVW---EDEFKDLG--LEDCIEHVWRDTIVYLDDDKPIM- 181 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccc---hhHHHhcC--cHHHHHhhcCCcEEEecCCceee-
Confidence 3479999999999999999999999999998754221111000 00111111 01111111211111000000000
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeC--Ce---EEEcCCcEeeccEEEEecCCCC
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINR--NE---VEFENGKIEEFEAIIFATGYKS 314 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p 314 (381)
.+..+- .-.+..+...+.+.+.+.+++++.. |+.+.. ++ +.+.+|.++.++.||.|+|...
T Consensus 182 --~~~~Yg---~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 --IGRAYG---RVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred --ccCccc---EEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000000 0011223344455556667888666 777753 33 3457788999999999999865
No 435
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.62 E-value=0.012 Score=54.83 Aligned_cols=33 Identities=30% Similarity=0.606 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 479999999999999999999999999999987
No 436
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.61 E-value=0.006 Score=59.01 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+++|||+|+.|+++|..+++.|.+|.++.+..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 58999999999999999999999999999864
No 437
>PRK10015 oxidoreductase; Provisional
Probab=96.59 E-value=0.0029 Score=59.61 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|+.|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 479999999999999999999999999999987
No 438
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.58 E-value=0.0036 Score=58.46 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
-+|+|||+|++|.-+|..|++.|.+|.++.+++.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4689999999999999999999999999999874
No 439
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.56 E-value=0.0066 Score=56.67 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
-+++|||+|.+|+-+|..|++. |.+|+++.|.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999875
No 440
>PRK07045 putative monooxygenase; Reviewed
Probab=96.56 E-value=0.0085 Score=55.83 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
-+|+|||+|++|+-+|..|++.|.+|++++|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999883
No 441
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.54 E-value=0.0055 Score=57.37 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 789999999999999999999999999999987
No 442
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.51 E-value=0.0077 Score=56.65 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~ 202 (381)
+|+|||+|..|+-+|..|++.| .+|+++.|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6899999999999999999998 5999999987
No 443
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.49 E-value=0.015 Score=54.74 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|+.|+-+|..|++.|.+|++++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4679999999999999999999999999999987
No 444
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.47 E-value=0.0027 Score=57.83 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++|++|||+|.-|+.||..|++.|.+|+++|+...+||
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 58999999999999999999999999999999976665
No 445
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.45 E-value=0.015 Score=56.79 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4679999999999999999999999999999987
No 446
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.44 E-value=0.067 Score=52.48 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=64.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (381)
++|+|||+|..|+.+|..+.+.+ .+++|+.+.+.. .++. ..++.
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~---------------------------------~~~~~~~~~~- 313 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRE---------------------------------DMPAHDEEIE- 313 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcc---------------------------------cCCCCHHHHH-
Confidence 67999999999999999888888 568888876410 0111 11222
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEE---Ee------ecC----CCceEEEEeCEEEEccCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIV---AK------NTA----LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~---~~------~~~----~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+.++++++++.+..+..++ ++...++ .. ++. .++...+.+|.||+|+|..|..
T Consensus 314 ----~a~~~GVki~~~~~~~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 382 (564)
T PRK12771 314 ----EALREGVEINWLRTPVEIEGDE-NGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS 382 (564)
T ss_pred ----HHHHcCCEEEecCCcEEEEcCC-CCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCch
Confidence 1334588988888888886543 1221121 11 110 2334689999999999988753
No 447
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.42 E-value=0.011 Score=56.02 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHhh----CCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSS----CGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~----~g~~v~~i~r~~ 202 (381)
+|+|||+|++|+-+|..|++ .|.+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999954
No 448
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.02 Score=53.07 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=28.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCC---eeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGA---CTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~---~v~~i~r~~ 202 (381)
.+|+|||+|.+|+.+|..|.+... .|+++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 579999999999999999998642 388998877
No 449
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.023 Score=50.21 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=71.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
-+||+|||||-+|+.+|+-|+-.-..|+++|-.+.+ ..+. .
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------------------------------kAD~---V 394 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------------------------------KADA---V 394 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------------------------------------hhHH---H
Confidence 389999999999999999998765689998855421 1122 3
Q ss_pred HHHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 83 VDNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
++..+. ..++++..+...+.+.-+. ++.-.+...+...++...+.-+-|++-.|.-|+.-=++|
T Consensus 395 Lq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg 459 (520)
T COG3634 395 LQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKG 459 (520)
T ss_pred HHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhc
Confidence 333333 3478888887777776553 122225556666667778888889999998877543344
No 450
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.33 E-value=0.012 Score=54.82 Aligned_cols=31 Identities=35% Similarity=0.484 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+|+|||+|++|+-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
No 451
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.31 E-value=0.038 Score=51.92 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..++++|||+|++|.-.|..|.+.|.+++++.|.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 46899999999999999999999999999999998
No 452
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.29 E-value=0.0043 Score=41.68 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=27.2
Q ss_pred EEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 174 VVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 174 viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999998
No 453
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.27 E-value=0.0016 Score=59.59 Aligned_cols=32 Identities=34% Similarity=0.641 Sum_probs=28.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|+++.|++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 68999999999999999999999999999988
No 454
>PRK06126 hypothetical protein; Provisional
Probab=96.26 E-value=0.018 Score=56.22 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4679999999999999999999999999999887
No 455
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.24 E-value=0.0051 Score=58.35 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=36.1
Q ss_pred cccchhhhhhcCCCeEEccC-cceEe--CC----eEEEcCCcEeeccEEEEecCCCCCc
Q 035902 265 TIDVGAMDKIRKGEIQVFPS-ITSIN--RN----EVEFENGKIEEFEAIIFATGYKSTV 316 (381)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~-v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~~p~~ 316 (381)
.++.-+.+...+.+++++.+ |..+. ++ .|.+++|+++++|.+|=|+|++...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 33444566667789999988 66553 22 4677899999999999999996543
No 456
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.21 E-value=0.0092 Score=50.53 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.6
Q ss_pred EEEEcCCCCHHHHHHHHhhCC--CeeEEEEecC
Q 035902 172 VLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGP 202 (381)
Q Consensus 172 v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~ 202 (381)
.+|||||..|+.+|..|+.+- .+|.+++.++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 579999999999999999874 4677777665
No 457
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.12 E-value=0.02 Score=53.41 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+-+|..|++.|.+|+++.|++
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 579999999999999999999999999999997
No 458
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.11 E-value=0.019 Score=53.56 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=30.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC---CCeeEEEEec
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC---GACTSIVVRG 201 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~---g~~v~~i~r~ 201 (381)
-+|+|||+|+.|.-+|..|++. |.+|++++|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999995
No 459
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.07 E-value=0.061 Score=51.38 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999999999865
No 460
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.03 E-value=0.0067 Score=58.08 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~ 38 (381)
+||.+|||||.||+..|..|.+. ..+|+|+|+....
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 49999999999999999999987 5799999987533
No 461
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.00 E-value=0.0063 Score=44.80 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35789999999999999999999999999999883
No 462
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.00 E-value=0.0089 Score=48.97 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||+|..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999875
No 463
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.00 E-value=0.011 Score=55.22 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=34.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
=+++||+|+|-|..-...|..|.+.|.+|+-+|+++..||.|..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 03699999999999999999999999999999999999997754
No 464
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.98 E-value=0.0075 Score=48.26 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|||||..|.++|..|+++|.+|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998864
No 465
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.97 E-value=0.016 Score=48.53 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+.+++++|||||.+|..-+..|.+.|.+|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 568999999999999999999999999999997543
No 466
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.95 E-value=0.038 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||||..|+-+|..|++.|.+|+++.|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56789999999999999999999999999999976
No 467
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.95 E-value=0.023 Score=52.91 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3579999999999999999999999999999988
No 468
>PRK06996 hypothetical protein; Provisional
Probab=95.92 E-value=0.015 Score=54.36 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCC----CeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCG----ACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g----~~v~~i~r~~ 202 (381)
..+|+|||+|+.|.-+|..|++.| .+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 357999999999999999999986 4799999975
No 469
>PRK06185 hypothetical protein; Provisional
Probab=95.92 E-value=0.018 Score=53.97 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4579999999999999999999999999999986
No 470
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.90 E-value=0.016 Score=53.42 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.++++|||||.+|+++|..|++.|.+|+++.+.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 36889999999999999999999999999999988
No 471
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.89 E-value=0.014 Score=48.81 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|||||..|...+..|.+.|.+|+|++++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34789999999999999999999999999998764
No 472
>PRK07538 hypothetical protein; Provisional
Probab=95.89 E-value=0.027 Score=52.92 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 68999999999999999999999999999987
No 473
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.88 E-value=0.015 Score=56.77 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34689999999999999999999999999999987
No 474
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.86 E-value=0.014 Score=46.55 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
.++|+|||||..|..-+..|.+.|.+|+||++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 478999999999999999999999999999654
No 475
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.021 Score=53.71 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=29.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.|+|||||+.|+|+|...++.|.++.+++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 478999999999999999999999988877544
No 476
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.79 E-value=0.022 Score=52.84 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~ 202 (381)
-+++|||||.+|+-+|.+|++.. .+|.++.+.+
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 47899999999999999999998 7899999876
No 477
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.76 E-value=0.018 Score=50.22 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=28.5
Q ss_pred cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 285 ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 285 v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
|.+++++ .|.+.+|+++..|.+|+|+|..-++.
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccc
Confidence 6666664 78899999999999999999998874
No 478
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.74 E-value=0.082 Score=51.10 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.-+|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3479999999999999999999999999999876
No 479
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.014 Score=49.71 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++++|||+|..|...|..|.+.|..|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 369999999999999999999999999999986
No 480
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.051 Score=50.21 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
--.|+|||||+.|+|+|...++.|++..+++.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 457999999999999999999999988777744
No 481
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.72 E-value=0.023 Score=44.18 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVP-NIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~ 36 (381)
.++++|||+|-+|..++..|...|.+ ++|+.|+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 47899999999999999999999986 99999874
No 482
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.63 E-value=0.011 Score=48.55 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||.|+.|+.+|..|++.|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 59999999999999999999999999999875
No 483
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.027 Score=57.21 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++++.|||+|+.|.-+|..|.+.|..|++..|++
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 68999999999999999999999999999999998
No 484
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.51 E-value=0.023 Score=47.46 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+.++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3478999999999999999999999999999864
No 485
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=95.48 E-value=0.079 Score=46.83 Aligned_cols=34 Identities=29% Similarity=0.579 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...++|||+|..|+..|.+|+++|.++.++.+-+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 4578999999999999999999999999998766
No 486
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.45 E-value=0.015 Score=53.92 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|+|||||..|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 689999999999999999999999999999776
No 487
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.07 Score=44.28 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=74.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
+-.+|||||-+.+.-|..|.+.+.+|.|+-|.+++ .-...+
T Consensus 158 k~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f---------------------------------------RAs~~M 198 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF---------------------------------------RASKIM 198 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh---------------------------------------hHHHHH
Confidence 56899999999999999999999999999887632 112333
Q ss_pred HHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 84 DNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 84 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
++.+.+ .++++++++.+.+..-+. ...-.+.+.+...++...+..+-|+.|.|-.|...-+.|
T Consensus 199 q~ra~~npnI~v~~nt~~~ea~gd~-~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g 262 (322)
T KOG0404|consen 199 QQRAEKNPNIEVLYNTVAVEALGDG-KLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG 262 (322)
T ss_pred HHHHhcCCCeEEEechhhhhhccCc-ccccceEEEecccCcccccccceeEEEecCCchhhHhcC
Confidence 444444 477888888776654332 111226666666667788999999999999987655555
No 488
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.026 Score=50.26 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=32.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.-.+|.|||+|..|...|..+++.|.+|+++|++.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34789999999999999999999999999999875
No 489
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.26 E-value=0.029 Score=49.87 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|.-.+|.|||+|..|...|..+++.|.+|+++|.+.
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 433679999999999999999999999999999875
No 490
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.22 E-value=0.023 Score=53.61 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+++|+|||+|+.|..+|..|++.|.+|+++.|.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3457999999999999999999999999999998877
No 491
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.22 E-value=0.025 Score=50.17 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999875
No 492
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.17 E-value=0.091 Score=45.05 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|..|+-+|..|.+.|.+|+++.++.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 368999999999999999999999999999876
No 493
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.17 E-value=0.025 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=33.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|..++|.|||.|..|+..|..|+++|++|+.+|.++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 666789999999999999999999999999999875
No 494
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.12 E-value=0.015 Score=46.07 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCC
Q 035902 172 VLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKK 251 (381)
Q Consensus 172 v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (381)
|+|+|+|.+|.-+|..|++.|.+|+++.|++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~------------------------------------------------ 32 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPR------------------------------------------------ 32 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHH------------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcccc------------------------------------------------
Q ss_pred CCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCCeEEEcCC--cEeeccEEEEec
Q 035902 252 GPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRNEVEFENG--KIEEFEAIIFAT 310 (381)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~~v~~~~g--~~~~~D~vi~a~ 310 (381)
.+.+++.++.+... -+............ ..-++|.||+|+
T Consensus 33 -------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 33 -------------------LEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp -------------------HHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred -------------------HHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
No 495
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.12 E-value=0.041 Score=55.92 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++. |.+|+++.+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 689999999999999999998 78999999987
No 496
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.065 Score=48.09 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecCc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGPV 203 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~~ 203 (381)
..+++|||+|+.|+-.|..|.+. +.+|+++.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV 56 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc
Confidence 44999999999999999998884 478999999884
No 497
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.05 E-value=0.055 Score=45.59 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.+++++|||||..|..=+..|.+.|.+|+++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa------------------------------------------------ 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS------------------------------------------------ 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc------------------------------------------------
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecC
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATG 311 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G 311 (381)
|.+..++.+....++++++.. .++.+....++.||.||+
T Consensus 56 ----------------p~i~~el~~l~~~~~i~~~~r---------~~~~~dl~g~~LViaATd 94 (223)
T PRK05562 56 ----------------KKFSKEFLDLKKYGNLKLIKG---------NYDKEFIKDKHLIVIATD 94 (223)
T ss_pred ----------------CCCCHHHHHHHhCCCEEEEeC---------CCChHHhCCCcEEEECCC
No 498
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.01 E-value=0.023 Score=41.80 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+..+++++|||||..|..-+..|.+.|.+|+++.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 346899999999999999999999999999999865
No 499
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.01 E-value=0.022 Score=53.01 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|..|+++|..|++.|.+|+++.+++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999999999999999999877
No 500
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.00 E-value=0.052 Score=50.40 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 74 VPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+...+...+.+ |++++.++.|.+++.++ +.|.|.+.++ ..+++|.||+|+|.+
T Consensus 132 idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~g-----~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDANG-----EVIAASVVVLANGAQ 189 (381)
T ss_pred cChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCCC-----CEEEcCEEEEcCCcc
Confidence 3445666667677777 89999999999998765 5677877765 458999999999988
Done!