BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035904
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 27/245 (11%)
Query: 71 GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130
G +L LDLS N F G +P S S L+ L L N SG P + M ++ +D
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHG--------------------------QI 164
++N SGELP ++ + L +L LS+NNF G +I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 165 PSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEW 224
P TLSNC +L L LS N +G IP +G+L+KL +L L N L+GEIPQ+L + LE
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 225 LSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGS 284
L L + LTG IPS + N T+L + SNN LTG R+ L ++NN F+G+
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGN 529
Query: 285 IPHNL 289
IP L
Sbjct: 530 IPAEL 534
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 75 SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNS 134
+LQ L L +N F+G IP ++ + S L L L N LSG+ PS + S +S +R + N
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 453
Query: 135 LSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGN 194
L GE+P + Y+ L++L L N+ G+IPS LSNC L +SLS N TG IPK IG
Sbjct: 454 LEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 195 LTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDF 251
L L L L N G IP +LG+ L WL L + GTIP+++F + + +F
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 52 VTALNISYFGLTGTISSQVGNLS-SLQTLDLSHNQFSGTIPSSIFS--ISTLKILILGDN 108
+ L++S+ +G + + NLS SL TLDLS N FSG I ++ +TL+ L L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 109 QLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTL 168
+G P +SN S + ++ ++N LSG +P+++ S L L+ L L N G+IP L
Sbjct: 405 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQEL 462
Query: 169 SNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228
K L+ L L ND TG IP + N T L + L N+L GEIP+ +G L L L L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 229 QSFLTGTIPSSIFNLTSLLELDFSNNSLTGS 259
+ +G IP+ + + SL+ LD + N G+
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 121/272 (44%), Gaps = 56/272 (20%)
Query: 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129
+G+ S+LQ LD+S N+ SG +I + + LK+L + NQ G P + S++ +
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLS 275
Query: 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP------------------------ 165
N +GE+P + L L LS N+F+G +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 166 -STLSNCKQLQMLSLSINDFTGAIPKEIGNLTK--------------------------- 197
TL + L++L LS N+F+G +P+ + NL+
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 198 LTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257
L ELYL N G+IP L N +EL L L ++L+GTIPSS+ +L+ L +L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 258 GSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289
G +L + L+ + N TG IP L
Sbjct: 456 GEIPQEL-MYVKTLETLILDFNDLTGEIPSGL 486
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 120/262 (45%), Gaps = 39/262 (14%)
Query: 15 LKARITSDPSNLLAKNWTSIT------SVCSWIGITCDVSTHRVTALNISYFGLTGTISS 68
L I S SN NW S++ + WIG + L +S +G I +
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-----RLENLAILKLSNNSFSGNIPA 532
Query: 69 QVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFI---------- 118
++G+ SL LDL+ N F+GTIP+++F S + N ++G +I
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECH 588
Query: 119 -ISNMSSIRAIDCN-YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQM 176
N+ + I N LS P NI S + + G T N +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRV------------YGGHTSPTFDNNGSMMF 636
Query: 177 LSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236
L +S N +G IPKEIG++ L L LG+N + G IP ++G+L L L L + L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 237 PSSIFNLTSLLELDFSNNSLTG 258
P ++ LT L E+D SNN+L+G
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSG 718
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 73/307 (23%)
Query: 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQL 110
+ +L++S+ L+GTI S +G+LS L+ L L N G IP + + TL+ LIL N L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 111 SGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+G PS + SN +++ I + N L+GE+P I L L L LS N+F G IP+ L +
Sbjct: 479 TGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGD 536
Query: 171 CKQLQMLSLSINDFTGAIP----KEIGNLTK-----LTELYLGYNKLQGEIPQDLGNLAE 221
C+ L L L+ N F G IP K+ G + +Y+ + ++ E GNL E
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLE 595
Query: 222 LE--------------------------------------WLSLPQSFLTGTIPSSIFNL 243
+ +L + + L+G IP I ++
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 244 TSLLELDFSNNSLTGSFRDD----------------LCQRIP-------LLQRFYMTNNH 280
L L+ +N ++GS D+ L RIP +L ++NN+
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 281 FTGSIPH 287
+G IP
Sbjct: 716 LSGPIPE 722
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 138/299 (46%), Gaps = 47/299 (15%)
Query: 23 PSNLLAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQV------------ 70
P L +W+S + C++ G+TC +VT++++S L S+
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 71 --------GNLS------SLQTLDLSHNQFSGTIP--SSIFSISTLKILILGDNQLSGSF 114
G++S SL +LDLS N SG + +S+ S S LK L + N L F
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DF 140
Query: 115 PSFIIS--NMSSIRAIDCNYNSLSGELPANIFSYL-----PFLKSLALSANNFHGQIPST 167
P + ++S+ +D + NS+SG AN+ ++ LK LA+S N G +
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISG---ANVVGWVLSDGCGELKHLAISGNKISGDV--D 195
Query: 168 LSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSL 227
+S C L+ L +S N+F+ IP +G+ + L L + NKL G+ + + EL+ L++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 228 PQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286
+ G IP L SL L + N TG D L L ++ NHF G++P
Sbjct: 255 SSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 27/245 (11%)
Query: 71 GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130
G +L LDLS N F G +P S S L+ L L N SG P + M ++ +D
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHG--------------------------QI 164
++N SGELP ++ + L +L LS+NNF G +I
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 165 PSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEW 224
P TLSNC +L L LS N +G IP +G+L+KL +L L N L+GEIPQ+L + LE
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 225 LSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGS 284
L L + LTG IPS + N T+L + SNN LTG R+ L ++NN F+G+
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGN 526
Query: 285 IPHNL 289
IP L
Sbjct: 527 IPAEL 531
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
Query: 75 SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNS 134
+LQ L L +N F+G IP ++ + S L L L N LSG+ PS + S +S +R + N
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 450
Query: 135 LSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGN 194
L GE+P + Y+ L++L L N+ G+IPS LSNC L +SLS N TG IPK IG
Sbjct: 451 LEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 195 LTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDF 251
L L L L N G IP +LG+ L WL L + GTIP+++F + + +F
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 52 VTALNISYFGLTGTISSQVGNLS-SLQTLDLSHNQFSGTIPSSIFS--ISTLKILILGDN 108
+ L++S+ +G + + NLS SL TLDLS N FSG I ++ +TL+ L L +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 109 QLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTL 168
+G P +SN S + ++ ++N LSG +P+++ S L L+ L L N G+IP L
Sbjct: 402 GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQEL 459
Query: 169 SNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228
K L+ L L ND TG IP + N T L + L N+L GEIP+ +G L L L L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 229 QSFLTGTIPSSIFNLTSLLELDFSNNSLTGS 259
+ +G IP+ + + SL+ LD + N G+
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 121/272 (44%), Gaps = 56/272 (20%)
Query: 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129
+G+ S+LQ LD+S N+ SG +I + + LK+L + NQ G P + S++ +
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLS 272
Query: 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP------------------------ 165
N +GE+P + L L LS N+F+G +P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 166 -STLSNCKQLQMLSLSINDFTGAIPKEIGNLTK--------------------------- 197
TL + L++L LS N+F+G +P+ + NL+
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 198 LTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257
L ELYL N G+IP L N +EL L L ++L+GTIPSS+ +L+ L +L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 258 GSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289
G +L + L+ + N TG IP L
Sbjct: 453 GEIPQEL-MYVKTLETLILDFNDLTGEIPSGL 483
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 120/262 (45%), Gaps = 39/262 (14%)
Query: 15 LKARITSDPSNLLAKNWTSIT------SVCSWIGITCDVSTHRVTALNISYFGLTGTISS 68
L I S SN NW S++ + WIG + L +S +G I +
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-----RLENLAILKLSNNSFSGNIPA 529
Query: 69 QVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFI---------- 118
++G+ SL LDL+ N F+GTIP+++F S + N ++G +I
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECH 585
Query: 119 -ISNMSSIRAIDCN-YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQM 176
N+ + I N LS P NI S + + G T N +
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRV------------YGGHTSPTFDNNGSMMF 633
Query: 177 LSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236
L +S N +G IPKEIG++ L L LG+N + G IP ++G+L L L L + L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 237 PSSIFNLTSLLELDFSNNSLTG 258
P ++ LT L E+D SNN+L+G
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSG 715
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 73/307 (23%)
Query: 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQL 110
+ +L++S+ L+GTI S +G+LS L+ L L N G IP + + TL+ LIL N L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 111 SGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+G PS + SN +++ I + N L+GE+P I L L L LS N+F G IP+ L +
Sbjct: 476 TGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGD 533
Query: 171 CKQLQMLSLSINDFTGAIP----KEIGNLTK-----LTELYLGYNKLQGEIPQDLGNLAE 221
C+ L L L+ N F G IP K+ G + +Y+ + ++ E GNL E
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLE 592
Query: 222 LE--------------------------------------WLSLPQSFLTGTIPSSIFNL 243
+ +L + + L+G IP I ++
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 244 TSLLELDFSNNSLTGSFRDD----------------LCQRIP-------LLQRFYMTNNH 280
L L+ +N ++GS D+ L RIP +L ++NN+
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 281 FTGSIPH 287
+G IP
Sbjct: 713 LSGPIPE 719
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 138/299 (46%), Gaps = 47/299 (15%)
Query: 23 PSNLLAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQV------------ 70
P L +W+S + C++ G+TC +VT++++S L S+
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 71 --------GNLS------SLQTLDLSHNQFSGTIP--SSIFSISTLKILILGDNQLSGSF 114
G++S SL +LDLS N SG + +S+ S S LK L + N L F
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DF 137
Query: 115 PSFIIS--NMSSIRAIDCNYNSLSGELPANIFSYL-----PFLKSLALSANNFHGQIPST 167
P + ++S+ +D + NS+SG AN+ ++ LK LA+S N G +
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISG---ANVVGWVLSDGCGELKHLAISGNKISGDV--D 192
Query: 168 LSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSL 227
+S C L+ L +S N+F+ IP +G+ + L L + NKL G+ + + EL+ L++
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 228 PQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286
+ G IP L SL L + N TG D L L ++ NHF G++P
Sbjct: 252 SSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 138/318 (43%), Gaps = 52/318 (16%)
Query: 5 NTTDQQALLALKARITSDPSNLLAKNWTSITSVC--SWIGITCDVST--HRVTALNIS-- 58
N D+QALL +K + +P+ L +W T C +W+G+ CD T +RV L++S
Sbjct: 4 NPQDKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 59 ---------------------YFG----LTGTISSQVGNLSSLQTLDLSHNQFSGTIPSS 93
Y G L G I + L+ L L ++H SG IP
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 94 IFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSL 153
+ I TL L N LSG+ P IS++ ++ I + N +SG +P + S+ S+
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 154 ALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIP 213
+S N G+IP T +N L + LS N G G+ +++L N L ++
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 214 QDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPL--- 270
+ +G L L L + + GT+P + L L L+ S N +LC IP
Sbjct: 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN--------NLCGEIPQGGN 289
Query: 271 LQRF----YMTNNHFTGS 284
LQRF Y N GS
Sbjct: 290 LQRFDVSAYANNKCLCGS 307
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 164 IPSTLSNCKQLQMLSLS-INDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAEL 222
IPS+L+N L L + IN+ G IP I LT+L LY+ + + G IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 223 EWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282
L + L+GT+P SI +L +L+ + F N ++G+ D L ++ N T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 283 GSIP 286
G IP
Sbjct: 188 GKIP 191
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 78 TLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSG 137
++D S + + IPS+I + + K L L N+LS S PS ++ +R + N N L
Sbjct: 20 SVDCSSKKLTA-IPSNIPADT--KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ- 74
Query: 138 ELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTK 197
LPA IF L L++L ++ N L L L N P+ +LTK
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 198 LTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
LT L LGYN+LQ L L+ L L + L +P F+ LT L L NN L
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
Query: 257 T----GSFRDDLCQRIPLLQ 272
G+F D +++ +LQ
Sbjct: 194 KRVPEGAF--DSLEKLKMLQ 211
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 13/210 (6%)
Query: 36 SVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIF 95
++C G C + ++ +++ S LT I S + + + LDL N+ S ++PS F
Sbjct: 3 ALCKKDGGVCSCNNNK-NSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAF 57
Query: 96 -SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLA 154
++ L++L L DN+L + P+ I + ++ + N L LP +F L L L
Sbjct: 58 HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELR 115
Query: 155 LSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEI-GNLTKLTELYLGYNKLQGEIP 213
L N P + +L LSL N+ ++PK + LT L EL L N+L+ +P
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVP 173
Query: 214 QD-LGNLAELEWLSLPQSFLTGTIPSSIFN 242
+ L EL+ L L + L +P F+
Sbjct: 174 EGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 47 VSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILG 106
V+ +++ AL I F Q+ NL+ L+ L NQ P S++ L L LG
Sbjct: 92 VTDNKLQALPIGVF-------DQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 107 DNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPS 166
N+L S P + ++S++ + YN+ +P F L LK+L L N
Sbjct: 142 YNELQ-SLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199
Query: 167 TLSNCKQLQMLSLSIN 182
+ ++L+ML L N
Sbjct: 200 AFDSLEKLKMLQLQEN 215
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 48 STHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGD 107
S ++T L++ Y L L+SL+ L L +NQ + ++ LK L L +
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 108 NQL----SGSFPSFIISNMSSIRA--IDCNYNSL 135
NQL G+F S M ++ DC N +
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFS-ISTLKILILGDNQ 109
++T LN+ Y L + +L+ L TL L++NQ + ++P +F ++ L L LG NQ
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ 118
Query: 110 LSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLS 169
L S PS + ++ ++ + N N L +PA F L L++L+LS N
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 170 NCKQLQMLSLSINDF 184
+LQ ++L N F
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 4/155 (2%)
Query: 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSG 112
L++ GL + L+ L L+L +NQ T+ + +F ++ L L L +NQL+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96
Query: 113 SFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCK 172
S P + +++ + + N L LP+ +F L LK L L+ N
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 173 QLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNK 207
LQ LSLS N L KL + L N+
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 70/165 (42%), Gaps = 36/165 (21%)
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPK 190
+YN L L A +F L L +L L+ N QL L L + D
Sbjct: 67 DYNQLQ-TLSAGVFDDLTELGTLGLANN--------------QLASLPLGVFD------- 104
Query: 191 EIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLEL 249
+LT+L +LYLG N+L+ L +L+ L L + L +IP+ F+ LT+L L
Sbjct: 105 ---HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160
Query: 250 DFSNNSLT----GSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290
S N L G+F R+ LQ + N F S L+
Sbjct: 161 SLSTNQLQSVPHGAF-----DRLGKLQTITLFGNQFDCSRCETLY 200
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFS-ISTLKILILGDNQ 109
++T LN+ Y L + +L+ L TL L++NQ + ++P +F ++ L L LG NQ
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ 118
Query: 110 LSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLS 169
L S PS + ++ ++ + N N L +PA F L L++L+LS N
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 170 NCKQLQMLSLSINDF 184
+LQ ++L N F
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 4/155 (2%)
Query: 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSG 112
L++ GL + L+ L L+L +NQ T+ + +F ++ L L L +NQL+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96
Query: 113 SFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCK 172
S P + +++ + + N L LP+ +F L LK L L+ N
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 173 QLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNK 207
LQ LSLS N L KL + L N+
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 36/156 (23%)
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPK 190
+YN L L A +F L L +L L+ N QL L L + D
Sbjct: 67 DYNQLQ-TLSAGVFDDLTELGTLGLANN--------------QLASLPLGVFD------- 104
Query: 191 EIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLEL 249
+LT+L +LYLG N+L+ L +L+ L L + L +IP+ F+ LT+L L
Sbjct: 105 ---HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160
Query: 250 DFSNNSLT----GSFRDDLCQRIPLLQRFYMTNNHF 281
S N L G+F R+ LQ + N F
Sbjct: 161 SLSTNQLQSVPHGAF-----DRLGKLQTITLFGNQF 191
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 16/179 (8%)
Query: 33 SITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPS 92
+ S CS G T D + R S G ++ Q L L NQ + P
Sbjct: 12 ACPSQCSCSGTTVDCRSKR-------------HASVPAGIPTNAQILYLHDNQITKLEPG 58
Query: 93 SIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKS 152
S+ LK L LG NQL G+ P + +++ + +D N L+ LP+ +F L LK
Sbjct: 59 VFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKE 116
Query: 153 LALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGE 211
L + N ++P + L L+L N L+ LT YL N E
Sbjct: 117 LFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 161 HGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDL-GNL 219
H +P+ + Q+L L N T P +L L ELYLG N+L G +P + +L
Sbjct: 31 HASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 220 AELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTN 278
+L L L + LT +PS++F+ L L EL N LT R +R+ L +
Sbjct: 88 TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRG--IERLTHLTHLALDQ 144
Query: 279 NHFTGSIPH 287
N SIPH
Sbjct: 145 NQLK-SIPH 152
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 138 ELPANIFSYLPFLKSLALSANNFHGQIP-STLSNCKQLQMLSLSINDFTGAIPKEIGNLT 196
+L +F L LK L L +N G +P + QL +L L N T L
Sbjct: 54 KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112
Query: 197 KLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNS 255
L EL++ NKL E+P+ + L L L+L Q+ L +IP F+ L+SL N
Sbjct: 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNP 170
Query: 256 LTGSFRD 262
RD
Sbjct: 171 WDCECRD 177
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Query: 60 FGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFII 119
FG T + NL++L+ LD+S N+ S S + ++ L+ LI +NQ+S P I+
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGIL 215
Query: 120 SNMSSIRAIDCNYNSLSGELPANI--FSYLPFLKSLALSANNFHGQIPSTLSNCKQLQML 177
+N+ + SL+G +I + L L L L+ N P LS +L L
Sbjct: 216 TNLDEL--------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 265
Query: 178 SLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP 237
L N + P + LT LT L L N+L+ P + NL L +L+L + ++ P
Sbjct: 266 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Query: 238 SSIFNLTSLLELDFSNNSLT 257
S +LT L L FSNN ++
Sbjct: 322 VS--SLTKLQRLFFSNNKVS 339
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 20/208 (9%)
Query: 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS 111
+T+L FG T + NL++L+ LD+S N+ S S + ++ L+ LI +NQ+S
Sbjct: 154 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 211
Query: 112 GSFPSFIISNMSSIRAIDCNYNSLSGELPANI--FSYLPFLKSLALSANNFHGQIPSTLS 169
P I++N+ + SL+G +I + L L L L+ N P LS
Sbjct: 212 DITPLGILTNLDEL--------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS 261
Query: 170 NCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQ 229
+L L L N + P + LT LT L L N+L+ P + NL L +L+L
Sbjct: 262 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 317
Query: 230 SFLTGTIPSSIFNLTSLLELDFSNNSLT 257
+ ++ P S +LT L L F+NN ++
Sbjct: 318 NNISDISPVS--SLTKLQRLFFANNKVS 343
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 60 FGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFII 119
FG T + NL++L+ LD+S N+ S S + ++ L+ LI +NQ+S P I+
Sbjct: 158 FGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGIL 215
Query: 120 SNMSSIRAIDCNYNSLSGELPANI--FSYLPFLKSLALSANNFHGQIPSTLSNCKQLQML 177
+N+ + SL+G +I + L L L L+ N P LS +L L
Sbjct: 216 TNLDEL--------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 265
Query: 178 SLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP 237
L N + P + LT LT L L N+L+ P + NL L +L+L + ++ P
Sbjct: 266 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Query: 238 SSIFNLTSLLELDFSNNSLT 257
S +LT L L F NN ++
Sbjct: 322 VS--SLTKLQRLFFYNNKVS 339
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 56 NISYFGLTGTI---SSQVGNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLS 111
N+ Y L G S + L++L L L+ NQ ++P+ +F ++ LK L+L +NQL
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122
Query: 112 GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNC 171
S P + ++++ + +N L LP +F L L L L N
Sbjct: 123 -SLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 172 KQLQMLSLSINDFTGAIPKEIGNLTKLTELYL 203
QL+ LSL+ N LT LT ++L
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 118 IISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG--------------- 162
II+N S I+++ YLP ++ LAL N H
Sbjct: 46 IIANNSDIKSVQG-------------IQYLPNVRYLALGGNKLHDISALKELTNLTYLIL 92
Query: 163 ---QIPS-------TLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEI 212
Q+ S L+N K+L ++ + + LT LT LYL +N+LQ
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV---FDKLTNLTYLYLYHNQLQSLP 149
Query: 213 PQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSLTGSFRDDLCQRIPLL 271
L L L L + L ++P +F+ LT L +L ++N L S D + R+ L
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSL 207
Query: 272 QRFYMTNN 279
++ NN
Sbjct: 208 THIWLLNN 215
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 30/165 (18%)
Query: 92 SSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLK 151
S++ ++ L LIL NQL S P+ + +++++ + N L LP +F L L
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLT 136
Query: 152 SLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEI-GNLTKLTELYLGYNKLQG 210
L L +H Q+ S +PK + LT LT L L N+LQ
Sbjct: 137 YLYL----YHNQLQS---------------------LPKGVFDKLTNLTRLDLDNNQLQS 171
Query: 211 EIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNN 254
L +L+ LSL + L ++P +F+ LTSL + NN
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 60 FGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFII 119
FG T + NL++L+ LD+S N+ S S + ++ L+ LI +NQ+S P I+
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGIL 220
Query: 120 SNMSSIRAIDCNYNSLSGELPANI--FSYLPFLKSLALSANNFHGQIPSTLSNCKQLQML 177
+N+ + SL+G +I + L L L L+ N P LS +L L
Sbjct: 221 TNLDEL--------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270
Query: 178 SLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP 237
L N + P + LT LT L L N+L+ P + NL L +L+L + ++ P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Query: 238 SSIFNLTSLLELDFSNNSLT 257
S +LT L L F NN ++
Sbjct: 327 VS--SLTKLQRLFFYNNKVS 344
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFP-SFIISNMSSIRAIDCNY 132
SS L+ + N F+ ++ ++ L+ LIL N L F + + NMSS+ +D +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 133 NSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEI 192
NSL+ ++ + L LS+N G + L ++++L L N+ +IPK++
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH-NNRIMSIPKDV 469
Query: 193 GNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP 237
+L L EL + N+L+ L L+++ L + T P
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 119 ISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQ--LQM 176
IS +S +R + ++N + L ++F + L+ L +S N +S C L+
Sbjct: 72 ISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQN-----ISCCPMASLRH 125
Query: 177 LSLSINDF-TGAIPKEIGNLTKLTELYLGYNKLQ 209
L LS NDF + KE GNLTKLT L L K +
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 6/173 (3%)
Query: 41 IGITCDVSTHRVTALNISYFGLTGT--ISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSIS 98
+G+ C + L++S+ + + S Q+ NLS LQTL+LSHN+ G +
Sbjct: 338 LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECP 397
Query: 99 TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSAN 158
L++L L +L + P N+ ++ ++ Y L ++ + LP L+ L L N
Sbjct: 398 QLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTS-NQHLLAGLPVLRHLNLKGN 456
Query: 159 NFH-GQIPST--LSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208
+F G I T L L++L LS + +L K++ + L +N L
Sbjct: 457 HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 138 ELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTK 197
++ + F L+ L L+A + G +PS + L+ L LS+N F N
Sbjct: 265 DISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPS 323
Query: 198 LTELYLGYN--KLQGEIP--QDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSN 253
LT LY+ N KL + + LGNL L+ LS + + NL+ L L+ S+
Sbjct: 324 LTHLYIRGNVKKLHLGVGCLEKLGNLQTLD-LSHNDIEASDCCSLQLKNLSHLQTLNLSH 382
Query: 254 NSLTG----SFRDDLCQRIPLL 271
N G +F++ C ++ LL
Sbjct: 383 NEPLGLQSQAFKE--CPQLELL 402
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 25/218 (11%)
Query: 68 SQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127
S + L+SLQ L S NQ + P + +++TL+ L + N++S +++ ++++ +
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS---VLAKLTNLES 199
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
+ N +S P I + L L+L+ N TL++ L L L+ N +
Sbjct: 200 LIATNNQISDITPLGILTNL---DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 254
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP-SSIFNLTSL 246
P + LTKLTEL LG N++ P L L L L L ++ L P S++ NLT
Sbjct: 255 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLT-Y 309
Query: 247 LELDFSNNSLTGSFRDDL--CQRIPLLQRFYMTNNHFT 282
L L F+N S D+ + LQR + +NN +
Sbjct: 310 LTLYFNNIS-------DISPVSSLTKLQRLFFSNNKVS 340
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 118 IISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQML 177
II+N S I+++ YLP ++ LAL N H S L L L
Sbjct: 46 IIANNSDIKSVQG-------------IQYLPNVRYLALGGNKLHD--ISALKELTNLTYL 90
Query: 178 SLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP 237
L+ N LT L EL L N+LQ L L +L+L + L ++P
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLP 149
Query: 238 SSIFN-LTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290
+F+ LT+L ELD S N L S + + ++ L+ + N S+P ++
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVF 201
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 139 LPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEI-GNLTK 197
LP +F L LK L L N L L+L+ N ++PK + LT
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTN 158
Query: 198 LTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSL 246
LTEL L YN+LQ L +L+ L L Q+ L ++P +F+ LTSL
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSL 207
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 31/158 (19%)
Query: 56 NISYFGLTGTI---SSQVGNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLS 111
N+ Y L G S + L++L L L+ NQ ++P+ +F ++ LK L+L +NQL
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122
Query: 112 GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNC 171
S P + ++++ ++ +N L LP +F L L L LS N
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYN------------- 167
Query: 172 KQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQ 209
QLQ L + D LT+L +L L N+L+
Sbjct: 168 -QLQSLPEGVFD----------KLTQLKDLRLYQNQLK 194
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQL 110
+T LN+++ L L++L LDLS+NQ ++P +F ++ LK L L NQL
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
Query: 111 SGSFPSFIISNMSSIRAI 128
S P + ++S++ I
Sbjct: 194 K-SVPDGVFDRLTSLQYI 210
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 27/219 (12%)
Query: 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNY 132
L L L L +N+ S + + L+ L + N L P + S++ +R D
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHD--- 132
Query: 133 NSLSGELPANIFSYLPFLKSLALSANNFH--GQIPSTLSNCKQLQMLSLSINDFTGAIPK 190
N + ++P +FS L + + + N G P K L L +S TG IPK
Sbjct: 133 NRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPK 189
Query: 191 EIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELD 250
++ L EL+L +NK+Q +DL ++L L L + + S+ L +L EL
Sbjct: 190 DLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247
Query: 251 FSNNSLTGSFRDDLCQRIP-------LLQRFYMTNNHFT 282
NN L+ R+P LLQ Y+ N+ T
Sbjct: 248 LDNNKLS---------RVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRCELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L+ NN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 68 SQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127
S + L+SLQ L+ S NQ + P + +++TL+ L + N++S +++ ++++ +
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS---VLAKLTNLES 199
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
+ N +S P I + L L+L+ N TL++ L L L+ N +
Sbjct: 200 LIATNNQISDITPLGILTNL---DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 254
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP-SSIFNLTSL 246
P + LTKLTEL LG N++ P L L L L L ++ L P S++ NLT
Sbjct: 255 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLT-Y 309
Query: 247 LELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282
L L F+N S + LQR + NN +
Sbjct: 310 LTLYFNNISDISP-----VSSLTKLQRLFFYNNKVS 340
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRAELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L+ NN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 19 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRCELT--- 69
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 70 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 127
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L+ NN ++P+ L N
Sbjct: 128 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 170
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 77 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRAELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L+ NN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRAELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L+ NN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLN 169
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRCELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L ANN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLN 169
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRCELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L ANN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLN 169
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRCELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L ANN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLN 169
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 68 SQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127
S + L+SLQ L S NQ + P + +++TL+ L + N++S +++ ++++ +
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS---VLAKLTNLES 199
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
+ N +S P I + L L+L+ N TL++ L L L+ N +
Sbjct: 200 LIATNNQISDITPLGILTNL---DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 254
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP-SSIFNLTSL 246
P + LTKLTEL LG N++ P L L L L L ++ L P S++ NLT
Sbjct: 255 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLT-Y 309
Query: 247 LELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282
L L F+N S + LQR + NN +
Sbjct: 310 LTLYFNNISDISP-----VSSLTKLQRLFFYNNKVS 340
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 91/237 (38%), Gaps = 57/237 (24%)
Query: 45 CDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILI 104
CD+S V ++N+ + SS + +Q LDL+ +G +PS I +++LK L+
Sbjct: 251 CDMS---VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLV 306
Query: 105 LGDNQL-------SGSFPS----FIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSL 153
L N + SFPS +I NM R +D L L L+ L
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIKGNM---RKLD---------LGTRCLEKLENLQKL 354
Query: 154 ALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIP 213
LS H I + S+C LQ+ NL L L L YN+ G
Sbjct: 355 DLS----HSDIEA--SDCCNLQL----------------KNLRHLQYLNLSYNEPLGLED 392
Query: 214 QDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLE--------LDFSNNSLTGSFRD 262
Q +LE L + + L P S F LL LD SN L +D
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQD 449
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQF-SGTIPSS--IFSISTLKILILG 106
H + LN+S+ L + + L L+ L+L N F G+I + + + +L+ILIL
Sbjct: 424 HLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILS 483
Query: 107 D-NQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP 165
N LS +F + ++ +D ++NSL+G+ + S+L L L +++NN P
Sbjct: 484 SCNLLSIDQQAF--HGLRNVNHLDLSHNSLTGD-SMDALSHLKGLY-LNMASNNIRIIPP 539
Query: 166 STLSNCKQLQMLSLSIN 182
L Q +++LS N
Sbjct: 540 HLLPALSQQSIINLSHN 556
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRCELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L ANN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSL-ANNDLTELPAGLLN 169
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 152 SLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGE 211
L L N F +P LSN K L ++ LS N + + N+T+L L L YN+L+
Sbjct: 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 212 IPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
P+ L L LSL + ++ +P FN L++L L N L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 119 ISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLS 178
+SN + ID + N +S L FS + L +L LS N P T K L++LS
Sbjct: 50 LSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 179 LSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLS 226
L ND + +L+ L+ L +G N L + ++WLS
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCD--------CNMQWLS 148
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 66 ISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
+ ++ N L +DLS+N+ S S +++ L LIL N+L P + S+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSL 104
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFH 161
R + + N +S +P F+ L L LA+ AN +
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 8 DQQALLALKARITSDPSNL-LAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTI 66
D++ L AL + D + L L++N S+ + + T R+T LN+ LT
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT------RLTQLNLDRCELT--- 68
Query: 67 SSQV-GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125
QV G L L TLDLSHNQ ++P ++ L +L + N+L+ S P + + +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+ + N L LP + + P L+ L+L ANN ++P+ L N
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLN 169
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 147 LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206
LP L +L LS N +P L +L +S N T + L +L ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDFSNNSL 256
+L+ P L +LE LSL + LT +P+ + N L +L L NSL
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Query: 64 GTISSQVGNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNM 122
G S G + LDL N ++P+ +F +++L L LG N+L S P+ + + +
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKL 75
Query: 123 SSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSIN 182
+S+ ++ + N L LP +F L LK LAL+ N QL+ L L N
Sbjct: 76 TSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 183 DFTGAIPKEIGNLTKLTELYLGYNKLQGEIP 213
LT L ++L N P
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 173 QLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGN-LAELEWLSLPQSF 231
Q L L N LT LT+LYLG NKLQ +P + N L L +L+L +
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87
Query: 232 LTGTIPSSIFN-LTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290
L ++P+ +F+ LT L EL + N L S D + ++ L+ + N S+P ++
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF 144
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
+D NSL LP +F L L L L N + L L+LS N
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSL 246
LT+L EL L N+LQ L +L+ L L Q+ L ++P +F+ LTSL
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSL 150
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 83 HNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPAN 142
++Q ++P+ I + +T L L N L S P+ + ++S+ + N L LP
Sbjct: 15 YSQGRTSVPTGIPAQTT--YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNG 70
Query: 143 IFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELY 202
+F+ L L L LS N QL+ L+L+ N LT+L +L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 203 LGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP 237
L N+L+ L L+++ L + T P
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 63/154 (40%), Gaps = 11/154 (7%)
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
I CN L+ +P I S L L +N QL LSLS N
Sbjct: 12 IRCNSKGLTS-VPTGIPSSA---TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSL 246
LTKLT LYL NKLQ L +L+ L+L + L ++P IF+ LTSL
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSL 126
Query: 247 LELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNH 280
++ N S C RI L R+ N+
Sbjct: 127 QKIWLHTNPWDCS-----CPRIDYLSRWLNKNSQ 155
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 72 NLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130
L+ L L LS NQ ++P +F ++ L IL L +N+L S P+ + ++ ++ +
Sbjct: 50 KLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELAL 107
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP 165
+ N L +P IF L L+ + L N + P
Sbjct: 108 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 174 LQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLT 233
L L L+ N T +P EI NL+ L L L +N+L +P +LG+ +L++ + +T
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 234 GTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287
T+P NL +L L N L F L ++ FY+ +N +PH
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 66 ISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS 111
+ +++ NLS+L+ LDLSHN+ + ++P+ + S LK DN ++
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS------GSFPSFIISNMSSIRA 127
+LQ L + N+ + S ++ + ++ LG N L G+F + +S IR
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MKKLSYIRI 178
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
D N ++ LP P L L L N ++L L L LS N +
Sbjct: 179 ADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSL 227
+ N L EL+L NKL ++P G LA+ +++ +
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVP---GGLADHKYIQV 267
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 72 NLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131
NL +L TL L +N+ S P + + L+ L L NQL P + + +R +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE-- 130
Query: 132 YNSLSGELPANIFSYLPFLKSLALSANNFH--GQIPSTLSNCKQLQMLSLSINDFTGAIP 189
N ++ ++ ++F+ L + + L N G K+L + ++ + T IP
Sbjct: 131 -NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187
Query: 190 KEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLEL 249
+ G LTEL+L NK+ L L L L L + ++ S+ N L EL
Sbjct: 188 Q--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 250 DFSNNSLT---GSFRDDLCQRIPLLQRFYMTNNHFTG 283
+NN L G D +Q Y+ NN+ +
Sbjct: 246 HLNNNKLVKVPGGLADH-----KYIQVVYLHNNNISA 277
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Query: 61 GLTGTISSQVGNLS-SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFII 119
G +G+++S L+ ++++LDLS+N+ + S + L+ L+L N + +
Sbjct: 12 GSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSF 70
Query: 120 SNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFH--GQIPSTLSNCKQLQML 177
S++ S+ +D +YN LS L ++ F L L L L N + G+ S S+ +LQ+L
Sbjct: 71 SSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQIL 128
Query: 178 SL-SINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSL 227
+ +++ FT K+ LT L EL + + LQ P+ L ++ + L L
Sbjct: 129 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 27/149 (18%)
Query: 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLS---INDFTGAIPKEIGNLT---------- 196
L ++ +S N+FH +P T ++++ L+LS I+ TG IPK + L
Sbjct: 389 LTNIDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFS 447
Query: 197 ----KLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN-LTSLLELDF 251
+L ELY+ NKL +P D L L L + ++ L ++P IF+ LTSL ++
Sbjct: 448 LNLPQLKELYISRNKLMT-LP-DASLLPMLLVLKISRNQL-KSVPDGIFDRLTSLQKIWL 504
Query: 252 SNNSLTGSFRDDLCQRIPLLQRFYMTNNH 280
N S C RI L R+ N+
Sbjct: 505 HTNPWDCS-----CPRIDYLSRWLNKNSQ 528
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%)
Query: 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGS 113
AL ++ G+ +L SL+ LDLS+N S S +S+L L L N
Sbjct: 54 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 113
Query: 114 FPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQ 173
+ + S+++ ++ + ++ F+ L FL+ L + A++ P +L + +
Sbjct: 114 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 173
Query: 174 LQMLSLSIN 182
+ L L +
Sbjct: 174 VSHLILHMK 182
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 7/203 (3%)
Query: 41 IGITCDVSTHRVTALNISYFGL--TGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSIS 98
+G C + + L++S+ + + + Q+ NLS LQ+L+LS+N+ +
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 99 TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSAN 158
L++L L +L N+ ++ ++ ++ SL +F LP L+ L L N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQGN 459
Query: 159 NF-HGQIPST--LSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQD 215
+F G I T L +L++L LS D + +L + + L +N+L +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 216 LGNLAELEWLSLPQSFLTGTIPS 238
L +L + +L+L + ++ +PS
Sbjct: 520 LSHLKGI-YLNLASNHISIILPS 541
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 94/239 (39%), Gaps = 36/239 (15%)
Query: 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129
+G + D+S F G S+ SI+ K N S +F F S ++ +D
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF--NISSNTFHCF-----SGLQELD 284
Query: 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHG--QIPST-------------------- 167
LS ELP+ + L LK L LSAN F QI ++
Sbjct: 285 LTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 168 ---LSNCKQLQMLSLSINDF--TGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAEL 222
L N + L+ L LS +D + ++ NL+ L L L YN+ + +L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402
Query: 223 EWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHF 281
E L L + L S F LL++ ++SL + L +P LQ + NHF
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS------GSFPSFIISNMSSIRA 127
+LQ L + N+ + S ++ + ++ LG N L G+F + +S IR
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MKKLSYIRI 178
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
D N ++ LP P L L L N ++L L L LS N +
Sbjct: 179 ADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSL 227
+ N L EL+L NKL ++P G LA+ +++ +
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVP---GGLADHKYIQV 267
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 72 NLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131
NL +L TL L +N+ S P + + L+ L L NQL P + + +R +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE-- 130
Query: 132 YNSLSGELPANIFSYLPFLKSLALSANNFH--GQIPSTLSNCKQLQMLSLSINDFTGAIP 189
N ++ ++ ++F+ L + + L N G K+L + ++ + T IP
Sbjct: 131 -NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187
Query: 190 KEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLEL 249
+ G LTEL+L NK+ L L L L L + ++ S+ N L EL
Sbjct: 188 Q--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 250 DFSNNSLT---GSFRDDLCQRIPLLQRFYMTNNHFTG 283
+NN L G D +Q Y+ NN+ +
Sbjct: 246 HLNNNKLVKVPGGLADH-----KYIQVVYLHNNNISA 277
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 24/201 (11%)
Query: 99 TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSAN 158
T++ L +G N + P + N+ + + N LS LP IF P L +L++S N
Sbjct: 94 TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNN 151
Query: 159 NFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQG-EIPQDLG 217
N T LQ L LS N T ++ + L + YN L IP +
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVE 208
Query: 218 NL---------------AELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRD 262
L EL L L + LT T + + N L+E+D S N L
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266
Query: 263 DLCQRIPLLQRFYMTNNHFTG 283
++ L+R Y++NN
Sbjct: 267 PFV-KMQRLERLYISNNRLVA 286
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 12/230 (5%)
Query: 64 GTISSQVGNLSSLQTLDLSHN--QFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISN 121
G S+V +L SL+ LDLS N F G S F ++LK L L N + +F+
Sbjct: 338 GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--G 394
Query: 122 MSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSI 181
+ + +D +++L ++F L L L +S + + L++L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 182 NDF-TGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS--FLTGTIPS 238
N F +P L LT L L +L+ P +L+ L+ L++ + F T P
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 239 SIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFY-MTNNHFTGSIPH 287
N SL LD+S N + S + +L Q P F +T N F + H
Sbjct: 515 KCLN--SLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFACTCEH 561
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 55 LNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS--- 111
L++S+ L S + LQ LDLS + + S+S L LIL N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 112 -GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG-QIPSTLS 169
G+F +S++ + A++ N SL P +L LK L ++ N ++P S
Sbjct: 93 LGAFSG--LSSLQKLVAVETNLASLEN-FP---IGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 170 NCKQLQMLSLSIN 182
N L+ L LS N
Sbjct: 147 NLTNLEHLDLSSN 159
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 64 GTISSQ--VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISN 121
G ISS G L L L+L NQ +G P++ S ++ L LG+N++ + +
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLG 100
Query: 122 MSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNF 160
+ ++ ++ N +S +P + F +L L SL L++N F
Sbjct: 101 LHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPF 138
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPST--LSNCKQLQMLSLSINDFT 185
+DC L E+P +I P + L +N G+I S L L L N T
Sbjct: 13 VDCTGRGLK-EIPRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 186 GAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTS 245
G P + + EL LG NK++ + L +L+ L+L + ++ +P S +L S
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 246 LLELDFSNN 254
L L+ ++N
Sbjct: 128 LTSLNLASN 136
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 24/201 (11%)
Query: 99 TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSAN 158
T++ L +G N + P + N+ + + N LS LP IF P L +L++S N
Sbjct: 100 TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNN 157
Query: 159 NFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQG-EIPQDLG 217
N T LQ L LS N T ++ + L + YN L IP +
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVE 214
Query: 218 NL---------------AELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRD 262
L EL L L + LT T + + N L+E+D S N L
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272
Query: 263 DLCQRIPLLQRFYMTNNHFTG 283
++ L+R Y++NN
Sbjct: 273 PFV-KMQRLERLYISNNRLVA 292
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 10/229 (4%)
Query: 64 GTISSQVGNLSSLQTLDLSHN--QFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISN 121
G S+V +L SL+ LDLS N F G S F +LK L L N + +F+
Sbjct: 362 GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL--G 418
Query: 122 MSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSI 181
+ + +D +++L ++F L L L +S + + L++L ++
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 182 NDF-TGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS--FLTGTIPS 238
N F +P L LT L L +L+ P +L+ L+ L++ + F T P
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 239 SIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287
N SL LD+S N + S + +L L +T N F + H
Sbjct: 539 KCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 55 LNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS--- 111
L++S+ L S + LQ LDLS + + S+S L LIL N +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 112 -GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG-QIPSTLS 169
G+F +S++ + A++ N SL P +L LK L ++ N ++P S
Sbjct: 117 LGAFSG--LSSLQKLVAVETNLASLEN-FP---IGHLKTLKELNVAHNLIQSFKLPEYFS 170
Query: 170 NCKQLQMLSLSIN 182
N L+ L LS N
Sbjct: 171 NLTNLEHLDLSSN 183
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDN 108
TH + LN+S L S NL L+ LDLS+N S + LK L L N
Sbjct: 323 TH-LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 109 QLSGSFPSFIISNMSSIRAI 128
QL S P I ++S++ I
Sbjct: 382 QLK-SVPDGIFDRLTSLQKI 400
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 73 LSSLQTLDLSHNQFSGTIPSSIF--SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130
L++L+ L L+ G + S F +++L++L+L DN + P+ NM +D
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 131 NYNSLSGELPANIFSY 146
+N + ++ ++
Sbjct: 162 TFNKVKSICEEDLLNF 177
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 28/187 (14%)
Query: 24 SNLLAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSH 83
SN+ KN+T S + + C L+ S LT T+ G+L+ L+TL L
Sbjct: 300 SNMNIKNFT--VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357
Query: 84 NQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANI 143
NQ S I ++T M S++ +D + NS+S +
Sbjct: 358 NQLKEL--SKIAEMTT---------------------QMKSLQQLDISQNSVSYDEKKGD 394
Query: 144 FSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYL 203
S+ L SL +S+N I L ++++L L N +IPK++ L L EL +
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNV 451
Query: 204 GYNKLQG 210
N+L+
Sbjct: 452 ASNQLKS 458
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 20/247 (8%)
Query: 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGS 113
AL ++ G+ +L SL+ LDLS+N S S +S+L L L N
Sbjct: 80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139
Query: 114 FPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQ 173
+ + S+++ ++ + ++ F+ L FL+ L + A++ P +L + +
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199
Query: 174 LQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAEL---EWLSLPQS 230
+ L L + + + + + L L L D + +EL E SL +
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL------DTFHFSELSTGETNSLIKK 253
Query: 231 FLTGTIP---SSIF-------NLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNH 280
F + S+F ++ LLEL+FS N L S D + R+ LQ+ ++ N
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312
Query: 281 FTGSIPH 287
+ S P
Sbjct: 313 WDCSCPR 319
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 55 LNISYFGLTGTISSQVGNLS---SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS 111
N+ Y L + NL+ L+ L++S N F P S +S+LK L + ++Q+S
Sbjct: 196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Query: 112 GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSAN 158
++S+ ++ +N+LS LP ++F+ L +L L L N
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 141 ANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTE 200
A+ F +L L+ L L N+ + L L L N T L+KL E
Sbjct: 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151
Query: 201 LYL-----------GYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLEL 249
L+L +N++ + DLG L +LE++S + G +FNL L L
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS--EGAFEG-----LFNL-KYLNL 203
Query: 250 DFSNNSLTGSFRDDLCQRIPL--LQRFYMTNNHFTGSIP 286
N D+ PL L+ M+ NHF P
Sbjct: 204 GMCN-------IKDMPNLTPLVGLEELEMSGNHFPEIRP 235
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 88 GTIPSSIFSISTLKILILGDNQLSGSFPSFIIS-------NMSSIRAIDCNYNSLSGELP 140
G +P + S+STL+ L L DN + + + + ++ CN + S E
Sbjct: 99 GILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPL 158
Query: 141 ANIFSYLPFLKSLALSANNFHGQIPSTLSNCK-------QLQMLSLSINDFTGAIPKEIG 193
A++ K L LS N+ H P C+ QL+ L L T A K++
Sbjct: 159 ASVLRVKADFKELVLSNNDLHE--PGVRILCQGLKDSACQLESLKLENCGITAANCKDLC 216
Query: 194 NLTK----LTELYLGYNKL 208
++ L EL L NKL
Sbjct: 217 DVVASKASLQELDLSSNKL 235
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 107/273 (39%), Gaps = 53/273 (19%)
Query: 48 STHRVTALNISYFGLTGT----ISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKIL 103
S ++ +L + G+T + V + +SLQ LDLS N+
Sbjct: 193 SACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNK------------------ 234
Query: 104 ILGDNQLSGSFPSFII--SNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFH 161
LG+ ++ P ++ + ++ +C+ + + + LK L+L++N
Sbjct: 235 -LGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELK 293
Query: 162 GQ-----IPSTLSNCKQLQMLSLSINDFTGA-IPKEIGNLTK---LTELYLGYNKLQGEI 212
+ S L QL+ L + T A P LTK L EL + N L E
Sbjct: 294 DEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEG 353
Query: 213 PQDLGN--------LAELEWLSLPQSFLTGTIPSSIFNL----TSLLELDFSNNSLTG-- 258
Q+L L EL WL +T + SS+ N+ SL ELD SNN + G
Sbjct: 354 VQELCKALSQPDTVLREL-WLG--DCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPG 410
Query: 259 --SFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289
+ L Q LQ+ + + ++T + L
Sbjct: 411 VLQLLESLKQPSCTLQQLVLYDIYWTNEVEEQL 443
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 26/169 (15%)
Query: 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129
+GN SSL+ LDLS N P +I L L+L + QL+ + +S+
Sbjct: 168 LGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTS--- 223
Query: 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCK--QLQMLSLSINDFTGA 187
+++L+L+ N ST S K L L LS N+
Sbjct: 224 --------------------IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDV 263
Query: 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236
L L L L YN +Q P+ L+ L +LSL ++F ++
Sbjct: 264 GNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133
S++ L+L+HNQ P++ S L IL G N +S P + + ++ ++ +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHN 83
Query: 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSIN 182
LS ++ F + L L L +N+ H + N K L L LS N
Sbjct: 84 ELS-QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 87/215 (40%), Gaps = 35/215 (16%)
Query: 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGT--------IPSSIFSISTLKIL 103
+T L++ + S+ N +L LDLSHN S T ++ KIL
Sbjct: 99 LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKIL 158
Query: 104 ILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQ 163
L +L + N SS+R +D + N L E F + L +L L+ +
Sbjct: 159 ALRSEELE------FLGN-SSLRKLDLSSNPLK-EFSPGCFQTIGKLFALLLNNAQLNPH 210
Query: 164 IPSTLSNCKQL-----QMLSLSINDFTGAIPKEIGNL--TKLTELYLGYNKLQGEIPQDL 216
+ L C +L Q LSL+ N L T LT+L L YN L D+
Sbjct: 211 LTEKL--CWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL-----HDV 263
Query: 217 GN-----LAELEWLSLPQSFLTGTIPSSIFNLTSL 246
GN L L +LSL + + P S + L++L
Sbjct: 264 GNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL 298
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS 111
+T L++SY L + L SL+ L L +N P S + +S L+ L L
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL-----SLK 304
Query: 112 GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
+F +S S D + F +L +L+ L + NN IPST SN
Sbjct: 305 RAFTKQSVSLASHPNIDDFS------------FQWLKYLEYLNMDDNN----IPSTKSN 347
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSF-------PSFIISNMSSI 125
L +L LDLS+N + + + L+IL L N L+ + P + + +S +
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFT 185
++ N E+P +F L LK + L NN + S +N L+ L+L N T
Sbjct: 539 HILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 186 GAIPKEIG-NLTKLTELYLGYN 206
K G LTEL + +N
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFN 619
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMS--SIRAIDCN 131
SSL+ L+LS NQ P +I L L L + QL S + ++ SIR + +
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKE 191
+ LS S F G + L+ ML LS N+
Sbjct: 231 NSQLS-----------------TTSNTTFLGLKWTNLT------MLDLSYNNLNVVGNDS 267
Query: 192 IGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236
L +L +L YN +Q L L + +L+L +SF +I
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 38 CSWIGITC---DVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSI 94
CS + +T D+ T+ +T LN+++ L ++ S L +LD+ N S P
Sbjct: 11 CSHLKLTQVPDDLPTN-ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69
Query: 95 FSISTLKILILGDNQLS 111
+ LK+L L N+LS
Sbjct: 70 QKLPMLKVLNLQHNELS 86
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSF-------PSFIISNMSSI 125
L +L LDLS+N + + + L+IL L N L+ + P + + +S +
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 548
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFT 185
++ N E+P +F L LK + L NN + S +N L+ L+L N T
Sbjct: 549 HILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Query: 186 GAIPKEIG-NLTKLTELYLGYN 206
K G LTEL + +N
Sbjct: 608 SVEKKVFGPAFRNLTELDMRFN 629
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 25/165 (15%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133
SSL+ L+LS NQ P +I L L L + QL S + +++
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS------- 233
Query: 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCK--QLQMLSLSINDFTGAIPKE 191
+++L+LS + +T K L ML LS N+
Sbjct: 234 ----------------IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 277
Query: 192 IGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236
L +L +L YN +Q L L + +L+L +SF +I
Sbjct: 278 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 322
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 38 CSWIGITC---DVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSI 94
CS + +T D+ T+ +T LN+++ L ++ S L +LD+ N S P
Sbjct: 21 CSHLKLTQVPDDLPTN-ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 79
Query: 95 FSISTLKILILGDNQLS 111
+ LK+L L N+LS
Sbjct: 80 QKLPMLKVLNLQHNELS 96
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSF-------PSFIISNMSSI 125
L +L LDLS+N + + + L+IL L N L+ + P + + +S +
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 543
Query: 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFT 185
++ N E+P +F L LK + L NN + S +N L+ L+L N T
Sbjct: 544 HILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Query: 186 GAIPKEIG-NLTKLTELYLGYN 206
K G LTEL + +N
Sbjct: 603 SVEKKVFGPAFRNLTELDMRFN 624
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMS--SIRAIDCN 131
SSL+ L+LS NQ P +I L L L + QL S + ++ SIR + +
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 235
Query: 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKE 191
+ LS S F G + L+ ML LS N+
Sbjct: 236 NSQLS-----------------TTSNTTFLGLKWTNLT------MLDLSYNNLNVVGNDS 272
Query: 192 IGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236
L +L +L YN +Q L L + +L+L +SF +I
Sbjct: 273 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 317
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 38 CSWIGITC---DVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSI 94
CS + +T D+ T+ +T LN+++ L ++ S L +LD+ N S P
Sbjct: 16 CSHLKLTQVPDDLPTN-ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 74
Query: 95 FSISTLKILILGDNQLS 111
+ LK+L L N+LS
Sbjct: 75 QKLPMLKVLNLQHNELS 91
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 16/185 (8%)
Query: 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129
+ NL+ L +L L++NQ P + S+++L NQ++ P ++N + + ++
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANXTRLNSLK 227
Query: 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHG-QIPSTLSNCKQLQMLSLSINDFTGAI 188
N ++ P S L +L+ + N L+ K L + S I+D +
Sbjct: 228 IGNNKITDLSPLANLSQLTWLE---IGTNQISDINAVKDLTKLKXLNVGSNQISDIS--- 281
Query: 189 PKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLE 248
+ NL++L L+L N+L E + +G L L L L Q+ +T P + +L+
Sbjct: 282 --VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDS 337
Query: 249 LDFSN 253
DF+N
Sbjct: 338 ADFAN 342
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 38/241 (15%)
Query: 68 SQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQ-LSGSFPSFIISNMSSIR 126
S + NL++L+ L L+ + S P + +++ L LG N LS P +SN + +
Sbjct: 104 SALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDLSP---LSNXTGLN 158
Query: 127 AIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTG 186
+ + + P + L L SL+L+ N P L++ L + +N T
Sbjct: 159 YLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213
Query: 187 AIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSL 246
P + N T+L L +G NK+ P L NL++L WL + + ++ +++ +LT L
Sbjct: 214 ITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL 267
Query: 247 LELD---------------------FSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSI 285
L+ F NN+ G+ ++ + L +++ NH T
Sbjct: 268 KXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIR 327
Query: 286 P 286
P
Sbjct: 328 P 328
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 174 LQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQG-EIPQDLGNLAEL 222
L+ L+L+ N T P + NL KLT LY+G NK+ Q+L NL EL
Sbjct: 68 LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLREL 115
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 24/126 (19%)
Query: 18 RITSDPSNLLAKNWTSITSVCSWIGITC-DVSTHRVTALNISYFGLTGTISSQVGNLSSL 76
R+ SD SNL +K T++ +W G + DV ++ F GT+ ++ G S L
Sbjct: 26 RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQL 85
Query: 77 QTLDLSHNQFSGTIPSSIFSISTLKILILGD---NQLSGSFPSFIISNMSSIRAIDCNYN 133
Q +++ S+ I + GD N G+ + + +RA++ N N
Sbjct: 86 Q--------------AAVTSLKNNGIQVYGDVVMNHKGGADATEM------VRAVEVNPN 125
Query: 134 SLSGEL 139
+ + E+
Sbjct: 126 NRNQEV 131
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 11/222 (4%)
Query: 72 NLSSLQTLDLSHN--QFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129
L+ L L LS N F G S F ++LK L L N + +F+ + + +D
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLD 107
Query: 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDF-TGAI 188
+++L ++F L L L +S + + L++L ++ N F +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 189 PKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS--FLTGTIPSSIFNLTSL 246
P L LT L L +L+ P +L+ L+ L++ + F T P N SL
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SL 225
Query: 247 LELDFSNNSLTGSFRDDLCQRIPLLQRFY-MTNNHFTGSIPH 287
LD+S N + S + +L Q P F +T N F + H
Sbjct: 226 QVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFACTCEH 266
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Query: 43 ITCDVS-THRVTALNISYFGLTG-TISSQVGN-------------LSSLQTLDLSHNQFS 87
I D+S TH A N + GL+ + GN L +L LDLS Q
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 88 GTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128
P++ S+S+L++L + NQL S P I ++S++ I
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKI 523
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 55 LNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS--- 111
L++S+ L S + LQ LDLS + + S+S L LIL N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 112 -GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG-QIPSTLS 169
G+F +S++ + A++ N SL P +L LK L ++ N ++P S
Sbjct: 93 LGAFSG--LSSLQKLVAVETNLASLEN-FP---IGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 170 NCKQLQMLSLSIN 182
N L+ L LS N
Sbjct: 147 NLTNLEHLDLSSN 159
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 47 VSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFS-ISTLKILIL 105
+S + L+IS+ + LSSL+ L ++ N F IF+ + L L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 106 GDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP 165
QL P+ +++SS++ ++ N L +P IF L L+ + L N + P
Sbjct: 478 SQCQLEQLSPT-AFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 71 GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130
G +++++LDLS N+ + + + + L++LIL +++ + ++ S+ +D
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDL 107
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHG-QIPSTLSNCKQLQMLSL-SINDFTGAI 188
+ N LS L ++ F L LK L L N + + S N LQ L + ++ F+
Sbjct: 108 SDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 166
Query: 189 PKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSL 227
+ LT L EL + L+ Q L ++ ++ L+L
Sbjct: 167 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 205
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 32/246 (13%)
Query: 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS 111
+ LN++Y + L +LQ L+LS+N S+ + + + + L N ++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 112 GSFPSFIISN-----MSSIRAIDCNYNSLS--GELPA--NIF---SYLPFLKSLALSANN 159
II + + ++ +D N+L+ +P+ +IF + L L + L+AN
Sbjct: 352 ------IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 160 FH--------GQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLT-KLTELYLGYNKLQ- 209
H I L LQ+L L+ N F+ + + L +L+LG N LQ
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465
Query: 210 ---GEIPQDL-GNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLC 265
E+ D+ L+ L+ L L ++L P +LT+L L ++N LT +DL
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525
Query: 266 QRIPLL 271
+ +L
Sbjct: 526 ANLEIL 531
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 71 GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130
G +++++LDLS N+ + + + + L++LIL ++++ + ++ S+ +D
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDL 81
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHG-QIPSTLSNCKQLQMLSL-SINDFTGAI 188
+ N LS L ++ F L LK L L N + + S N LQ L + ++ F+
Sbjct: 82 SDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140
Query: 189 PKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSL 227
+ LT L EL + L+ Q L ++ ++ L+L
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 92/244 (37%), Gaps = 45/244 (18%)
Query: 55 LNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS--- 111
L++S+ L S + LQ LDLS + + S+S L LIL N +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 112 -GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
G+F +S++ + A++ N SL P +L LK L ++ N
Sbjct: 94 LGAFSG--LSSLQKLVAVETNLASLEN-FP---IGHLKTLKELNVAHN------------ 135
Query: 171 CKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELE------- 223
I F +P+ NLT L L L NK+Q DL L ++
Sbjct: 136 ---------LIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 184
Query: 224 WLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283
P +F I F L EL N L S D + R+ LQ+ ++ N +
Sbjct: 185 LSLNPMNF----IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 239
Query: 284 SIPH 287
S P
Sbjct: 240 SCPR 243
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 92/244 (37%), Gaps = 45/244 (18%)
Query: 55 LNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS--- 111
L++S+ L S + LQ LDLS + + S+S L LIL N +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 112 -GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
G+F +S++ + A++ N SL P +L LK L ++ N
Sbjct: 95 LGAFSG--LSSLQKLVAVETNLASLEN-FP---IGHLKTLKELNVAHN------------ 136
Query: 171 CKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELE------- 223
I F +P+ NLT L L L NK+Q DL L ++
Sbjct: 137 ---------LIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 185
Query: 224 WLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283
P +F I F L EL N L S D + R+ LQ+ ++ N +
Sbjct: 186 LSLNPMNF----IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 240
Query: 284 SIPH 287
S P
Sbjct: 241 SCPR 244
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 92/244 (37%), Gaps = 45/244 (18%)
Query: 55 LNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS--- 111
L++S+ L S + LQ LDLS + + S+S L LIL N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 112 -GSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN 170
G+F +S++ + A++ N SL P +L LK L ++ N
Sbjct: 93 LGAFSG--LSSLQKLVAVETNLASLEN-FP---IGHLKTLKELNVAHN------------ 134
Query: 171 CKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELE------- 223
I F +P+ NLT L L L NK+Q DL L ++
Sbjct: 135 ---------LIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 224 WLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283
P +F I F L EL N L S D + R+ LQ+ ++ N +
Sbjct: 184 LSLNPMNF----IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238
Query: 284 SIPH 287
S P
Sbjct: 239 SCPR 242
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 90/225 (40%), Gaps = 23/225 (10%)
Query: 75 SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQL----SGSFPSFIISNMSSIRAIDC 130
S + LDLS N S FS L++L L ++ G++ S +S++S++
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTGN 87
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTG-AIP 189
SL+ FS L L+ L N + + K L+ L+++ N +P
Sbjct: 88 PIQSLA----LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 143
Query: 190 KEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELE-------WLSLPQSFLTGTIPSSIFN 242
+ NLT L L L NK+Q DL L ++ P +F I F
Sbjct: 144 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF----IQPGAFK 199
Query: 243 LTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287
L EL N L S D + R+ LQ+ ++ N + S P
Sbjct: 200 EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 175 QMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTG 234
Q L L+ N T P +L L +LY NKL L +L L L + L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK- 94
Query: 235 TIPSSIF-NLTSLLELDFSNNSLTGSFRD 262
+IP F NL SL + NN RD
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCECRD 123
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 90/225 (40%), Gaps = 23/225 (10%)
Query: 75 SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQL----SGSFPSFIISNMSSIRAIDC 130
S + LDLS N S FS L++L L ++ G++ S +S++S++
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLILTGN 88
Query: 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTG-AIP 189
SL+ FS L L+ L N + + K L+ L+++ N +P
Sbjct: 89 PIQSLA----LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 144
Query: 190 KEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELE-------WLSLPQSFLTGTIPSSIFN 242
+ NLT L L L NK+Q DL L ++ P +F I F
Sbjct: 145 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF----IQPGAFK 200
Query: 243 LTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287
L EL N L S D + R+ LQ+ ++ N + S P
Sbjct: 201 EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133
L+ +DLS+NQ S P + + +L L+L N+++ P + + S++ + N N
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNAN 114
Query: 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDF 184
++ L + F L L L+L N T S + +Q + L+ N F
Sbjct: 115 KIN-XLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 48 STHRVTALNISYFGLTGTISSQVGNLSSLQTLDL-SHNQ 85
S RVT L++ FG +G + +G L+ L+ L L SH +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 98 STLKILILGDNQLSGSFP-SFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALS 156
++I+ +G N L +FP + + ++C YN L G+LPA F L SL L+
Sbjct: 305 EKIQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPA--FGSEIKLASLNLA 361
Query: 157 ANNFHGQIPSTLSN-CKQLQMLSLSIN 182
N +IP+ +Q++ LS + N
Sbjct: 362 YNQIT-EIPANFCGFTEQVENLSFAHN 387
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 77 QTLDLSHNQFS-------GTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129
Q LSH Q +P + + L+ L L N L + P+ I S ++ +R +
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELS 156
Query: 130 CNYNSLSGELPANIFSY--------LPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSI 181
ELP + S L L+SL L +P++++N + L+ L +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIR- 214
Query: 182 NDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIF 241
N A+ I +L KL EL L P G A L+ L L T+P I
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274
Query: 242 NLTSLLELDF 251
LT L +LD
Sbjct: 275 RLTQLEKLDL 284
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 51/265 (19%)
Query: 73 LSSLQTLDLSHNQFSGTIPSSIF--SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130
L++L+ L L+ G + S F +++L++L+L DN + P+ NM +D
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 131 NYNSLSGELPANIFSYL-----------------------------PF----LKSLALSA 157
+N + ++ ++ PF + +L LS
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 158 NNFHGQIPSTLSNC---KQLQMLSLS-----INDFTGAIPKEIGNLT-------KLTELY 202
N F + + ++Q L LS + F K+ N T +
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 203 LGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRD 262
L +K+ + + +LE L+L Q+ + ++ + LT L EL N L S D
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVPD 340
Query: 263 DLCQRIPLLQRFYMTNNHFTGSIPH 287
+ R+ LQ+ ++ N + S P
Sbjct: 341 GIFDRLTSLQKIWLHTNPWDCSCPR 365
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133
L+ +DLS+NQ S P + + +L L+L N+++ P + + S++ + N N
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNAN 114
Query: 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDF 184
++ L + F L L L+L N T S + +Q + L+ N F
Sbjct: 115 KINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 88 GTIPSSIFSISTLKILILGDNQLSGSFPSFIIS-------NMSSIRAIDCNYNSLSGELP 140
G +PS++ S+ TL+ L L DN L + + ++ ++ C + S E
Sbjct: 99 GVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPL 158
Query: 141 ANIFSYLPFLKSLALSANNFHGQIPSTL------SNCKQLQMLSLSINDFTGAIPKEIGN 194
A++ LK L +S N+ L S C QL+ L L T A K++
Sbjct: 159 ASVLRATRALKELTVSNNDIGEAGARVLGQGLADSAC-QLETLRLENCGLTPANCKDLCG 217
Query: 195 LTK----LTELYLGYNKL 208
+ L EL LG N L
Sbjct: 218 IVASQASLRELDLGSNGL 235
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 193 GNLTKLTELYLGYNKLQGEIPQDLGNLAE-LEWLSLPQSFLTGTIPSSIFNLTSLL---E 248
G KLT+L L YN+++ EIP+D + +E L + L IP +IFN S+
Sbjct: 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVXGS 648
Query: 249 LDFSNNSLTGSFRDDLC 265
+DFS N + R+ C
Sbjct: 649 VDFSYNKIGSEGRNISC 665
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 30 NWTSITSVCSW---IGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQF 86
NW + W G+ D + RVT L+++ FG G + +G L+ L+ LS
Sbjct: 301 NWNFNKELDXWGDQPGVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKV--LSFGTH 357
Query: 87 SGTIPSSIFSISTL 100
S T+ +F L
Sbjct: 358 SETVSGRLFGDEEL 371
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 56 NISYFGLTGTISSQVGNLS---SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSG 112
N+ Y L ++ NL+ L LDLS N S P S + L+ L + +Q+
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244
Query: 113 SFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSAN 158
N+ S+ I+ +N+L+ LP ++F+ L L+ + L N
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 57 ISYFGLTGTISSQV---GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGS 113
I LT T + V LS+LQ L L NQ + P + ++ L+ L +G+NQ++
Sbjct: 115 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDL 172
Query: 114 FPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQ 173
P +S ++++RA D + +S + LP L + L N P L+N
Sbjct: 173 TPLANLSKLTTLRADDNKISDISP------LASLPNLIEVHLKDNQISDVSP--LANLSN 224
Query: 174 LQMLSLS 180
L +++L+
Sbjct: 225 LFIVTLT 231
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 72 NLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128
L+ L LDL +NQ + +P+ +F ++ L L L DNQL S P N+ S+ I
Sbjct: 60 RLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHI 115
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 72 NLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128
L+ L LDL +NQ + +P+ +F ++ L L L DNQL S P N+ S+ I
Sbjct: 52 RLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHI 107
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 79 LDLSHNQFSGTIPS-SIFSISTLKILILGDNQLSGSFPSFIISN----MSSIRAIDCNYN 133
LDLSHN S + ++ L L+L N L+ FI S + ++R +D + N
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-----FISSEAFVPVPNLRYLDLSSN 98
Query: 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLS---INDFTGAIPK 190
L L +FS L L+ L L N+ + + QLQ L LS I+ F + K
Sbjct: 99 HLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 191 EIGNLTKLTELYLGYNKLQGEIPQDLGNL 219
+ L KL L L NKL+ DL L
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 72 NLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128
L+ L LDL +NQ + +P+ +F ++ L L L DNQL S P N+ S+ I
Sbjct: 52 RLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHI 107
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187
++C SL+ +PA I + + L L N P + QL L+L++N T
Sbjct: 24 VNCQERSLA-SVPAGIPTTT---QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTAL 79
Query: 188 IPKEIGNLTKLTELYLGYNKLQ 209
LTKLT L L N+L+
Sbjct: 80 PVGVFDKLTKLTHLALHINQLK 101
>pdb|3VBP|A Chain A, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBP|C Chain C, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBP|E Chain E, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Query: 6 TTDQQALLALKARITSDPSNLLAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGT 65
+ + L++ KA I +P + N I C G S + A Y G G
Sbjct: 34 SVGKNVLISKKASIY-NPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGI 92
Query: 66 ISSQVGNLSSLQTLDLSHNQFSG------TIPSSIFSISTLKILILGDNQLSGS----FP 115
N+SS + + N FSG TIP+ ++ T K+ IL + + G+ FP
Sbjct: 93 EMYDFANISSRTIVYAAINDFSGNALMGPTIPNQYKNVKTGKV-ILKKHVIIGAHSIIFP 151
Query: 116 SFIISNMSSIRAIDCNYNSL 135
+ +I ++ A+ SL
Sbjct: 152 NVVIGEGVAVGAMSMVKESL 171
>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|B Chain B, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|C Chain C, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|D Chain D, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|E Chain E, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|F Chain F, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|G Chain G, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|H Chain H, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|I Chain I, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2H66|J Chain J, The Crystal Structure Of Plasmodium Vivax 2-Cys
Peroxiredoxin
pdb|2I81|A Chain A, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|B Chain B, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|C Chain C, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|D Chain D, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
pdb|2I81|E Chain E, Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin,
Reduced
Length = 213
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 140 PANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLT 199
P + PF K+ A+ +N G++ T K+ +L DFT P EI L K
Sbjct: 20 PTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKAL 79
Query: 200 ELY 202
+ +
Sbjct: 80 DAF 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,043,873
Number of Sequences: 62578
Number of extensions: 303000
Number of successful extensions: 1276
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 309
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)