Query 035904
Match_columns 291
No_of_seqs 192 out of 3277
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-34 2.3E-39 280.0 22.5 278 4-289 26-304 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.4E-28 7.3E-33 235.0 17.8 239 49-290 139-377 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.9E-26 4E-31 197.8 2.6 207 49-257 172-378 (873)
4 KOG4194 Membrane glycoprotein 99.9 5.8E-26 1.3E-30 194.8 3.0 235 49-286 124-382 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.1E-24 1.8E-28 183.4 -1.8 235 49-291 77-314 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.4E-28 182.6 -2.6 233 50-291 55-289 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 4.6E-23 1E-27 170.0 -7.9 227 50-290 68-295 (565)
8 KOG4237 Extracellular matrix p 99.8 2.2E-21 4.7E-26 159.7 -1.6 132 49-182 66-198 (498)
9 PRK15370 E3 ubiquitin-protein 99.8 1.3E-17 2.8E-22 153.9 18.2 254 2-287 58-384 (754)
10 KOG0472 Leucine-rich repeat pr 99.8 5.9E-22 1.3E-26 163.5 -10.1 227 51-290 46-272 (565)
11 PLN03210 Resistant to P. syrin 99.7 7.4E-17 1.6E-21 157.6 18.6 226 50-287 611-887 (1153)
12 PRK15370 E3 ubiquitin-protein 99.7 2.4E-17 5.2E-22 152.1 11.0 208 49-287 198-405 (754)
13 PLN03210 Resistant to P. syrin 99.7 1.9E-16 4.2E-21 154.7 17.9 128 50-184 589-716 (1153)
14 KOG0618 Serine/threonine phosp 99.7 1.7E-19 3.6E-24 162.6 -3.9 224 48-280 239-487 (1081)
15 cd00116 LRR_RI Leucine-rich re 99.7 5.6E-18 1.2E-22 144.1 3.3 231 51-282 24-291 (319)
16 PRK15387 E3 ubiquitin-protein 99.7 2.4E-16 5.2E-21 145.0 13.2 208 51-287 223-463 (788)
17 KOG0617 Ras suppressor protein 99.7 4E-19 8.6E-24 131.0 -4.1 164 70-241 29-193 (264)
18 cd00116 LRR_RI Leucine-rich re 99.7 7.6E-18 1.6E-22 143.3 2.1 233 49-281 50-319 (319)
19 KOG4237 Extracellular matrix p 99.7 3.4E-18 7.3E-23 141.1 -0.2 212 75-289 68-342 (498)
20 KOG0617 Ras suppressor protein 99.7 2E-18 4.4E-23 127.3 -2.6 163 94-264 29-192 (264)
21 KOG0618 Serine/threonine phosp 99.6 2.9E-18 6.2E-23 154.7 -4.6 224 49-283 218-466 (1081)
22 PRK15387 E3 ubiquitin-protein 99.6 2.2E-15 4.8E-20 138.7 13.9 206 50-290 201-442 (788)
23 PLN03150 hypothetical protein; 99.6 1.6E-14 3.4E-19 132.6 13.0 148 5-159 370-526 (623)
24 KOG1909 Ran GTPase-activating 99.4 6.2E-14 1.3E-18 114.4 0.1 233 49-281 29-310 (382)
25 KOG3207 Beta-tubulin folding c 99.3 7.1E-13 1.5E-17 111.3 1.2 209 49-257 120-339 (505)
26 KOG3207 Beta-tubulin folding c 99.3 5.9E-13 1.3E-17 111.8 0.6 210 71-282 118-339 (505)
27 KOG0532 Leucine-rich repeat (L 99.3 1.7E-13 3.7E-18 118.4 -2.9 195 73-279 74-270 (722)
28 COG4886 Leucine-rich repeat (L 99.2 1.7E-11 3.6E-16 107.5 7.2 176 72-257 114-290 (394)
29 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.6E-16 108.4 5.9 197 78-286 97-294 (394)
30 PF14580 LRR_9: Leucine-rich r 99.2 2.1E-11 4.5E-16 93.2 5.9 123 51-178 20-146 (175)
31 KOG1259 Nischarin, modulator o 99.2 3.1E-12 6.7E-17 102.9 0.8 202 49-258 181-413 (490)
32 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.2E-16 94.0 4.2 109 71-185 16-126 (175)
33 KOG0532 Leucine-rich repeat (L 99.2 6.4E-13 1.4E-17 115.0 -4.0 169 54-233 79-247 (722)
34 KOG1909 Ran GTPase-activating 99.2 5.4E-12 1.2E-16 103.3 0.8 216 67-283 23-284 (382)
35 PLN03150 hypothetical protein; 99.1 1.9E-10 4.1E-15 105.9 8.7 113 174-286 420-532 (623)
36 KOG4658 Apoptotic ATPase [Sign 99.0 3.3E-10 7.2E-15 106.9 3.9 108 49-159 544-653 (889)
37 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.6E-14 68.1 4.2 59 51-109 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3.1E-14 68.5 3.5 60 74-134 1-60 (61)
39 KOG1259 Nischarin, modulator o 98.8 5E-10 1.1E-14 90.4 0.2 133 95-235 281-414 (490)
40 KOG2982 Uncharacterized conser 98.8 1.7E-09 3.6E-14 87.2 1.7 187 71-258 68-263 (418)
41 PF08263 LRRNT_2: Leucine rich 98.7 1.3E-08 2.7E-13 59.0 3.7 41 5-46 1-43 (43)
42 KOG1859 Leucine-rich repeat pr 98.7 2.2E-10 4.7E-15 102.3 -5.7 181 91-282 102-292 (1096)
43 COG5238 RNA1 Ran GTPase-activa 98.7 1.9E-09 4E-14 85.9 -0.1 234 49-282 29-316 (388)
44 KOG0531 Protein phosphatase 1, 98.7 6.6E-10 1.4E-14 97.9 -3.3 128 73-209 71-199 (414)
45 KOG2982 Uncharacterized conser 98.7 1.5E-09 3.2E-14 87.5 -1.5 213 71-285 42-265 (418)
46 KOG2120 SCF ubiquitin ligase, 98.7 3.6E-10 7.8E-15 91.0 -5.1 179 75-256 186-375 (419)
47 KOG2120 SCF ubiquitin ligase, 98.7 2.2E-10 4.8E-15 92.2 -6.4 178 99-279 186-373 (419)
48 KOG0531 Protein phosphatase 1, 98.7 2.3E-09 4.9E-14 94.5 -1.9 223 52-286 74-322 (414)
49 KOG4658 Apoptotic ATPase [Sign 98.6 6.8E-08 1.5E-12 91.6 5.0 105 74-181 545-651 (889)
50 COG5238 RNA1 Ran GTPase-activa 98.5 4.5E-08 9.8E-13 78.2 2.2 214 70-283 26-286 (388)
51 KOG1859 Leucine-rich repeat pr 98.2 1.5E-08 3.2E-13 91.0 -7.0 196 51-257 85-292 (1096)
52 KOG1644 U2-associated snRNP A' 98.2 3E-06 6.4E-11 65.0 6.0 105 74-182 42-150 (233)
53 KOG4579 Leucine-rich repeat (L 98.2 9.9E-08 2.1E-12 68.5 -1.9 60 99-161 54-113 (177)
54 KOG3665 ZYG-1-like serine/thre 98.2 4.7E-07 1E-11 83.9 1.5 212 51-277 61-283 (699)
55 KOG4341 F-box protein containi 98.2 1.3E-07 2.7E-12 79.8 -2.3 86 49-134 137-227 (483)
56 PF12799 LRR_4: Leucine Rich r 98.1 3.9E-06 8.5E-11 48.6 3.5 36 75-111 2-37 (44)
57 KOG1644 U2-associated snRNP A' 98.1 7E-06 1.5E-10 63.0 5.4 126 77-207 22-151 (233)
58 KOG3665 ZYG-1-like serine/thre 98.1 1.4E-06 2.9E-11 80.9 1.8 133 74-209 122-263 (699)
59 PF13306 LRR_5: Leucine rich r 98.0 1.7E-05 3.7E-10 57.9 6.7 83 69-156 7-89 (129)
60 PF13306 LRR_5: Leucine rich r 98.0 1.8E-05 3.9E-10 57.7 6.6 9 195-203 80-88 (129)
61 KOG4579 Leucine-rich repeat (L 98.0 6.4E-07 1.4E-11 64.4 -1.2 84 72-160 51-135 (177)
62 PRK15386 type III secretion pr 98.0 5.2E-05 1.1E-09 65.5 9.0 51 51-108 53-104 (426)
63 PF12799 LRR_4: Leucine Rich r 97.9 6.4E-06 1.4E-10 47.7 2.3 36 221-257 2-37 (44)
64 KOG1947 Leucine rich repeat pr 97.7 4.8E-06 1E-10 74.9 -0.8 64 96-159 241-306 (482)
65 PRK15386 type III secretion pr 97.7 0.00048 1E-08 59.7 10.6 136 70-230 48-187 (426)
66 KOG2123 Uncharacterized conser 97.6 2.5E-06 5.4E-11 68.7 -4.0 102 49-154 18-123 (388)
67 KOG2123 Uncharacterized conser 97.5 3.6E-06 7.9E-11 67.7 -3.9 100 97-202 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 97.5 4.1E-05 8.9E-10 61.2 1.6 87 70-161 39-129 (260)
69 KOG4341 F-box protein containi 97.3 2.2E-05 4.7E-10 66.7 -1.9 227 50-279 190-436 (483)
70 KOG1947 Leucine rich repeat pr 97.3 2.7E-05 5.8E-10 70.1 -2.1 113 72-184 186-307 (482)
71 KOG2739 Leucine-rich acidic nu 97.1 0.00029 6.2E-09 56.4 2.4 106 49-158 42-153 (260)
72 PF00560 LRR_1: Leucine Rich R 96.8 0.00073 1.6E-08 32.6 1.5 20 270-290 1-20 (22)
73 PF13504 LRR_7: Leucine rich r 95.8 0.0042 9.2E-08 27.7 0.8 17 269-286 1-17 (17)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0082 1.8E-07 28.8 0.7 10 77-86 3-12 (22)
75 smart00370 LRR Leucine-rich re 95.1 0.011 2.5E-07 29.6 1.1 21 269-290 2-22 (26)
76 smart00369 LRR_TYP Leucine-ric 95.1 0.011 2.5E-07 29.6 1.1 21 269-290 2-22 (26)
77 KOG3864 Uncharacterized conser 94.5 0.0069 1.5E-07 46.9 -0.9 80 174-253 103-185 (221)
78 KOG4308 LRR-containing protein 94.2 0.00018 3.8E-09 64.2 -11.8 182 76-258 89-304 (478)
79 KOG4308 LRR-containing protein 94.1 0.00067 1.5E-08 60.6 -8.4 183 100-282 89-303 (478)
80 KOG3864 Uncharacterized conser 91.8 0.039 8.4E-07 42.9 -0.5 81 51-131 102-184 (221)
81 smart00369 LRR_TYP Leucine-ric 91.4 0.19 4.2E-06 24.9 2.0 21 123-144 2-22 (26)
82 smart00370 LRR Leucine-rich re 91.4 0.19 4.2E-06 24.9 2.0 21 123-144 2-22 (26)
83 PF13516 LRR_6: Leucine Rich r 91.4 0.094 2E-06 25.5 0.8 16 244-259 2-17 (24)
84 smart00364 LRR_BAC Leucine-ric 89.5 0.2 4.3E-06 25.0 1.0 18 269-287 2-19 (26)
85 KOG0473 Leucine-rich repeat pr 88.4 0.0082 1.8E-07 47.6 -6.7 84 49-136 41-124 (326)
86 smart00368 LRR_RI Leucine rich 85.1 0.63 1.4E-05 23.6 1.4 21 244-264 2-22 (28)
87 KOG3763 mRNA export factor TAP 79.6 1.4 2.9E-05 39.8 2.2 79 195-275 217-307 (585)
88 KOG0473 Leucine-rich repeat pr 79.2 0.039 8.5E-07 43.9 -6.5 85 146-233 40-124 (326)
89 smart00365 LRR_SD22 Leucine-ri 76.4 2.7 5.8E-05 21.0 1.8 14 74-87 2-15 (26)
90 KOG3763 mRNA export factor TAP 65.1 4.4 9.6E-05 36.7 2.0 12 97-108 243-254 (585)
91 smart00367 LRR_CC Leucine-rich 64.6 5.3 0.00012 19.6 1.5 11 74-84 2-12 (26)
92 KOG4242 Predicted myosin-I-bin 62.5 9 0.0002 34.2 3.3 60 149-208 215-280 (553)
93 PF02083 Urotensin_II: Urotens 26.4 22 0.00048 14.0 0.0 7 285-291 3-9 (12)
94 PF11239 DUF3040: Protein of u 21.9 1.1E+02 0.0024 20.0 2.7 23 3-25 2-25 (82)
95 TIGR00864 PCC polycystin catio 21.9 60 0.0013 36.0 2.1 32 80-111 1-32 (2740)
96 cd00938 HisRS_RNA HisRS_RNA bi 21.4 1.2E+02 0.0027 17.4 2.4 18 5-22 27-44 (45)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-34 Score=280.03 Aligned_cols=278 Identities=38% Similarity=0.683 Sum_probs=214.2
Q ss_pred CCHHHHHHHHHHHHHhccCCCCccCCCccCCCCccccceeEeecCCCceEEEEecCccccccCcccccCCCCCCEEeCCC
Q 035904 4 INTTDQQALLALKARITSDPSNLLAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSH 83 (291)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (291)
..++|.++++++++.+ .+|.+++.. |+...++|.|.|+.|+. ..+++.|+++++.+.+.++..+..+++|+.|++++
T Consensus 26 ~~~~~~~~l~~~~~~~-~~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 26 LHAEELELLLSFKSSI-NDPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCHHHHHHHHHHHHhC-CCCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 4678999999999999 578777776 98888999999999975 56999999999999999999999999999999999
Q ss_pred CccccccCcccc-CCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccc
Q 035904 84 NQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG 162 (291)
Q Consensus 84 ~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 162 (291)
|++.+.+|..+. .+.+|++|++++|++++.+|. ..+++|++|++++|.+.+.++..+ ..+++|++|++++|.+..
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccc
Confidence 999887887665 888999999999988766665 457778888888887775666554 367777888887777766
Q ss_pred cCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccC
Q 035904 163 QIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFN 242 (291)
Q Consensus 163 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 242 (291)
..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+.+..|..+..
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 66777777777777777777776666777777777777777777776666777777777777777777776666666666
Q ss_pred CCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCC
Q 035904 243 LTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 243 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|..+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhH
Confidence 677777777777666666655544 6666666666666666666543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.4e-28 Score=234.96 Aligned_cols=239 Identities=38% Similarity=0.555 Sum_probs=174.1
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|++|++++|.+++.+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+ ..+++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEE
Confidence 3467777777777766777777777777777777777776777777777777777777777776666654 677777777
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+.+.++..+ ..+++|++|++.+|.+....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 218 ~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 218 YLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred ECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 777777776666554 3677777777777777666677777777777777777777666676777777777777777777
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
.+.+|..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|+.
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChh
Confidence 7677777777777777777777777666666777777777777777777666665544 677777777777777777765
Q ss_pred CC
Q 035904 289 LW 290 (291)
Q Consensus 289 ~~ 290 (291)
++
T Consensus 376 ~~ 377 (968)
T PLN00113 376 LC 377 (968)
T ss_pred Hh
Confidence 53
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-26 Score=197.81 Aligned_cols=207 Identities=24% Similarity=0.272 Sum_probs=133.5
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
...+++|++++|.++..-...|..+.+|-.|.|+.|.++...+..|.++++|+.|++..|.+. .+....|.++++|+.|
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhh
Confidence 457888888888888777777878888888888888887555566667888888888877764 4444445777777777
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
.+..|++. .+..+.|..+.++++|++..|++.......+.++..|+.|+++.|.+...-++.+.-+++|+.|+++.|.+
T Consensus 251 klqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 251 KLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 77777776 66666666777777777777776655555566666666666666666644455555666666666666666
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCccc
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
+...+..|..+..|+.|+++.|++.......|..+++|++|||++|.++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 6544555555555555555555554333333444444444444444433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=5.8e-26 Score=194.81 Aligned_cols=235 Identities=23% Similarity=0.278 Sum_probs=163.5
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.+++++|++.+|.++..-...+..++.|++|||+.|.|+..-...|..-.+|++|++.+|.|+ .+..+.|..+.+|.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheee
Confidence 357999999999998877788888888999999988888444456666678888888888887 6666666777888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCc------------------------cccccCCCCcEEEcccCcC
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP------------------------STLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------------~~l~~~~~L~~L~l~~~~~ 184 (291)
.++.|+++ .+|...|.++++|+.|++..|++...-- ..|..+.++++|++..|.+
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 88888888 8888888778888888887777652212 3344444555555555555
Q ss_pred cCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHH
Q 035904 185 TGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDL 264 (291)
Q Consensus 185 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~ 264 (291)
...-..++-+++.|+.|+++.|.|....++....+++|+.|+++.|+++...++.|..+.+|++|+|++|.++ .+.+..
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGA 360 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhH
Confidence 5333445555666666666666666555555666666777777777776666666666677777777777766 444555
Q ss_pred HhhCccccEEEeecceeeeeCC
Q 035904 265 CQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 265 ~~~~~~L~~L~l~~n~l~~~ip 286 (291)
+..+++|++|||+.|.++..|-
T Consensus 361 f~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEe
Confidence 5556777777777777765443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8.1e-24 Score=183.42 Aligned_cols=235 Identities=27% Similarity=0.403 Sum_probs=168.7
Q ss_pred CCceEEEEecCccccc-cCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccE
Q 035904 49 THRVTALNISYFGLTG-TISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 127 (291)
.++|+++++..|++.. -+|..+-.+..|..|||++|+++ ++|..+...+++-.|++++|+|. .||...+.+++.|-.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 3456666666665533 24555666777777777777776 66776777777777777777776 677777777777777
Q ss_pred EEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCc-CccCccCCCCCCccEEEcCCC
Q 035904 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFT-GAIPKEIGNLTKLTELYLGYN 206 (291)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 206 (291)
|++++|++. .+|+... .+..|++|.+++|.+....-..+..+.+|+.|.+++..-+ ..+|..+..+.+|..++++.|
T Consensus 155 LDLS~NrLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hccccchhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 777777776 6666654 6677777777777765443344455566666777665543 246777778888888899988
Q ss_pred cccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee-eeC
Q 035904 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT-GSI 285 (291)
Q Consensus 207 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-~~i 285 (291)
.+. ..|+.+..+.+|+.|++++|.+++ +......+.+|++|++|+|+++ .+|..++. +++|++|.+.+|+++ .-|
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCC
Confidence 887 778888888999999999998874 3334556788899999999988 78888888 889999999988653 148
Q ss_pred CCCCCC
Q 035904 286 PHNLWQ 291 (291)
Q Consensus 286 p~~~~~ 291 (291)
|+.|.+
T Consensus 309 PSGIGK 314 (1255)
T KOG0444|consen 309 PSGIGK 314 (1255)
T ss_pred ccchhh
Confidence 877653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.1e-23 Score=182.59 Aligned_cols=233 Identities=24% Similarity=0.404 Sum_probs=195.5
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccc-cccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFS-GTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.+|++|.+++|.+.... ..+..++.|+.+.+.+|++. .-+|..+.++..|+.|+++.|++. ..|... ..-+++-.|
T Consensus 55 qkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVL 131 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEE
Confidence 36777888888776433 33677888888888888776 347888889999999999999998 888876 888899999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.|. .+|..+|.++.-|-.|++++|++. .+|...+.+..|++|++++|.+....-..+..+++|+.|++++.+-
T Consensus 132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 99999998 999999999999999999999988 6778889999999999999988643344566788899999998765
Q ss_pred c-CCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 209 Q-GEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 209 ~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
+ ..+|..+..+.+|..++++.|++. ..|..+..+++|+.|+||+|+|+ .+...... ..+|+.|+++.|+++ .+|+
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~-W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE-WENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH-Hhhhhhhccccchhc-cchH
Confidence 5 357888889999999999999998 78899999999999999999998 44433333 789999999999999 9999
Q ss_pred CCCC
Q 035904 288 NLWQ 291 (291)
Q Consensus 288 ~~~~ 291 (291)
++|+
T Consensus 286 avcK 289 (1255)
T KOG0444|consen 286 AVCK 289 (1255)
T ss_pred HHhh
Confidence 9875
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=4.6e-23 Score=169.95 Aligned_cols=227 Identities=30% Similarity=0.497 Sum_probs=186.8
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
.-++.++++++++. .+|.+++.+..++.+++++|++. ++|+.++.+.++..++++.|.+. .++..+ ..+..+..++
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~ 143 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLD 143 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhh
Confidence 35777888888777 56667788888888888888887 77888888888888888888876 677766 7777888888
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCccc
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
..+|+++ .+|++.+ .+.++..+.+.+|++... |+..-.+++|++++...|.+. .+|+.++.+.+|..|++..|++.
T Consensus 144 ~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred ccccccc-cCchHHH-HHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 8888887 7777765 778888889999988844 444445899999999888887 67888999999999999999997
Q ss_pred CCccccccCCCCCceEEccCccccCCCCc-cccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 210 GEIPQDLGNLAELEWLSLPQSFLTGTIPS-SIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
..| .|.++..|..++++.|.+. .+|. ...+++++..||+.+|++. +.|..++. +.+|.+||+++|.++ .+|..
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~s 293 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYS 293 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcc
Confidence 666 7889999999999999987 4454 4458999999999999998 78888888 899999999999999 78876
Q ss_pred CC
Q 035904 289 LW 290 (291)
Q Consensus 289 ~~ 290 (291)
..
T Consensus 294 Lg 295 (565)
T KOG0472|consen 294 LG 295 (565)
T ss_pred cc
Confidence 54
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-21 Score=159.73 Aligned_cols=132 Identities=21% Similarity=0.300 Sum_probs=107.7
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeec-ccCcCCCchhhhhcCCCccE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGD-NQLSGSFPSFIISNMSSIRA 127 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~ 127 (291)
....++|+|..|.|+...+.+|+.+++|++|||++|.|+...|.+|.++..+..|-+++ |+|+ .+|..+|.++..|+.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 46889999999999988888999999999999999999988899999999999998888 7777 899999999999999
Q ss_pred EEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccC
Q 035904 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSIN 182 (291)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 182 (291)
|.+.-|++. -+....+..++++..|.+..|.+..+-...+..+..++.+.+..|
T Consensus 145 LllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 145 LLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 988888887 777777888888888888777665322224455555555544433
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.3e-17 Score=153.86 Aligned_cols=254 Identities=24% Similarity=0.384 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCc--cCCCccCCCCccccce----------------eEeec----------------
Q 035904 2 NNINTTDQQALLALKARITSDPSNL--LAKNWTSITSVCSWIG----------------ITCDV---------------- 47 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~~~c~~~~----------------~~~~~---------------- 47 (291)
+.-+++|++.++++...+ +.|... ...+|...+++|.... +.|..
T Consensus 58 ~~~~~~~~~~~~~~~~~l-~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~ 136 (754)
T PRK15370 58 ETASPEEIKSKFECLRML-AFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASS 136 (754)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccccccccc
Confidence 456788999999999999 555553 3344888888885333 23321
Q ss_pred ---------------------------------------CCCceEEEEecCccccccCcccccCCCCCCEEeCCCCcccc
Q 035904 48 ---------------------------------------STHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSG 88 (291)
Q Consensus 48 ---------------------------------------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 88 (291)
...+.+.|++++++++. +|..+ .+.|+.|++++|+++
T Consensus 137 ~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt- 212 (754)
T PRK15370 137 ASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK- 212 (754)
T ss_pred CCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-
Confidence 01234455555555542 33322 235666666666666
Q ss_pred ccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCcccc
Q 035904 89 TIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTL 168 (291)
Q Consensus 89 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 168 (291)
.+|..+. .+|+.|++++|++. .+|..+ ..+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+
T Consensus 213 sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l 281 (754)
T PRK15370 213 SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENL 281 (754)
T ss_pred cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-cccccc
Confidence 4444332 36667777766665 555533 235666666666665 5555432 35666666666665 334333
Q ss_pred ccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCE
Q 035904 169 SNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLE 248 (291)
Q Consensus 169 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 248 (291)
. ++|+.|++++|.+.. +|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.++. +|..+. ++|+.
T Consensus 282 ~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~ 350 (754)
T PRK15370 282 P--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQV 350 (754)
T ss_pred C--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccE
Confidence 2 356666666666652 232221 234444444444431 22211 1344444444444442 222221 34445
Q ss_pred EEccCCcccccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 249 LDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 249 L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
|++++|.+. .+|..+ .++|+.|++++|.++ .+|+
T Consensus 351 L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 351 LDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPE 384 (754)
T ss_pred EECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCH
Confidence 555555444 233322 234444444444444 3443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=5.9e-22 Score=163.48 Aligned_cols=227 Identities=26% Similarity=0.401 Sum_probs=203.1
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 130 (291)
.+..+.+++|.++.. -+.+..+..|.++++++|++. +.|++++.+..++.++.+.|++. .+|+.+ ..+.++.++++
T Consensus 46 ~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhc
Confidence 578899999998844 444889999999999999998 88999999999999999999998 889887 88999999999
Q ss_pred cCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccC
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQG 210 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 210 (291)
++|.+. +++++++ .+-.++.++..+|++. .+|+.+..+.++..+++.+|.+....|+.+ .|..|++++...|.++
T Consensus 122 s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-
Confidence 999998 8888876 7778999999999998 678888899999999999999985555544 4999999999999987
Q ss_pred CccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 211 EIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 211 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
.+|..++.+.+|..|++..|.+. ..| .|.+|..|++|.++.|.|. .+|...++.++++..||+++|+++ ..|+.+|
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 78999999999999999999997 666 7899999999999999998 889999988999999999999999 8998875
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=7.4e-17 Score=157.58 Aligned_cols=226 Identities=23% Similarity=0.234 Sum_probs=112.2
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
.+|+.|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+ ..+++|++|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh-hccCCCCEEe
Confidence 35555666665554 3444455666666666666543334443 5556666666666665444555544 5666666666
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccC--------------------cccc---------------------
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQI--------------------PSTL--------------------- 168 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------~~~l--------------------- 168 (291)
+++|.....+|... .+++|+.|++.+|.....+ |..+
T Consensus 688 L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 688 MSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 66654333444432 3445555555444321111 1110
Q ss_pred ---------ccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCcc
Q 035904 169 ---------SNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSS 239 (291)
Q Consensus 169 ---------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 239 (291)
...++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|.....++..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 011234444444444433445555555555555555553322344332 3445555555554332222221
Q ss_pred ccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecc-eeeeeCCC
Q 035904 240 IFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNN-HFTGSIPH 287 (291)
Q Consensus 240 l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~~ip~ 287 (291)
.++|+.|++++|.+. .+|..+.. +++|+.|++++| .++ .+|.
T Consensus 845 ---~~nL~~L~Ls~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~-~l~~ 887 (1153)
T PLN03210 845 ---STNISDLNLSRTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQ-RVSL 887 (1153)
T ss_pred ---ccccCEeECCCCCCc-cChHHHhc-CCCCCEEECCCCCCcC-ccCc
Confidence 245666666666665 45554443 677777777764 444 4554
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2.4e-17 Score=152.14 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=142.4
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
...++.|++++|+++ .+|..+ .++|+.|++++|+++ .+|..+. +.|+.|++++|.+. .+|..+ ..+|++|
T Consensus 198 p~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l---~s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERL---PSALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhH---hCCCCEE
Confidence 357999999999998 455544 358999999999988 5666443 47999999999987 777755 3578999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.+
T Consensus 268 ~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L 337 (754)
T PRK15370 268 DLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENAL 337 (754)
T ss_pred ECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcc
Confidence 99999888 6776543 478999999988873 443332 357777777777763 34332 25677777777777
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
+. +|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|+
T Consensus 338 t~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 338 TS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred cc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCch
Confidence 63 454332 56777777777766 3444332 46777777777776 4554432 24666667777666 5554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=1.9e-16 Score=154.70 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=92.3
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
.+++.|.+.++.+. .+|..+ ...+|+.|++.++++. .++..+..+++|+.|+++++.....+|. +..+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEE
Confidence 35677777776654 455545 4678899999988887 5677778889999999988765556765 46789999999
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcC
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 184 (291)
+++|.....+|..+ ..+++|+.|++.+|.....+|..+ .+++|+.|++++|..
T Consensus 664 L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 664 LSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred ecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 99887655777664 478899999998875443455443 566777777766643
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.7e-19 Score=162.58 Aligned_cols=224 Identities=28% Similarity=0.399 Sum_probs=166.7
Q ss_pred CCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccE
Q 035904 48 STHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127 (291)
Q Consensus 48 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 127 (291)
....++.++++++.++ .+|..+..+.+|+.++..+|.+. .+|..++...+|+.|.+..|.+. .+|... .++..|++
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l-e~~~sL~t 314 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL-EGLKSLRT 314 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc-cccceeee
Confidence 3668999999999888 45577888999999998888885 55555555555555555555554 444432 44555555
Q ss_pred EEccCCccccccChhh-------------------------hccccCccEEEcccccccccCccccccCCCCcEEEcccC
Q 035904 128 IDCNYNSLSGELPANI-------------------------FSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSIN 182 (291)
Q Consensus 128 L~l~~~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 182 (291)
|++..|.+. .+|..+ -..++.|+.|++.+|.+++.....+..++.|+.|++++|
T Consensus 315 LdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 315 LDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 555555544 333322 123455788888888888766667888999999999999
Q ss_pred cCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCch
Q 035904 183 DFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRD 262 (291)
Q Consensus 183 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 262 (291)
.+.......+.+++.|++|++++|+++ .+|+.+..+..|++|...+|++. ..| .+..+++|+.+|++.|.++.....
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 998555567888999999999999998 78888999999999999999987 666 678899999999999998853333
Q ss_pred HHHhhCccccEEEeecce
Q 035904 263 DLCQRIPLLQRFYMTNNH 280 (291)
Q Consensus 263 ~~~~~~~~L~~L~l~~n~ 280 (291)
.... .|+|++||++||.
T Consensus 471 ~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 471 EALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhCC-CcccceeeccCCc
Confidence 2222 3799999999986
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5.6e-18 Score=144.14 Aligned_cols=231 Identities=24% Similarity=0.262 Sum_probs=117.5
Q ss_pred ceEEEEecCcccccc----CcccccCCCCCCEEeCCCCcccc------ccCccccCCCCccEEEeecccCcCCCchhhhh
Q 035904 51 RVTALNISYFGLTGT----ISSQVGNLSSLQTLDLSHNQFSG------TIPSSIFSISTLKILILGDNQLSGSFPSFIIS 120 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 120 (291)
.++.|+++++.+++. ++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+ .
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-E 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH-H
Confidence 366666666665432 33444555666666666655441 123344556666666666666653233222 3
Q ss_pred cCCC---ccEEEccCCccccccChh---hhccc-cCccEEEcccccccc----cCccccccCCCCcEEEcccCcCcCc--
Q 035904 121 NMSS---IRAIDCNYNSLSGELPAN---IFSYL-PFLKSLALSANNFHG----QIPSTLSNCKQLQMLSLSINDFTGA-- 187 (291)
Q Consensus 121 ~l~~---L~~L~l~~~~~~~~~~~~---~~~~~-~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~-- 187 (291)
.+.. |++|++++|.+.+..... .+..+ ++|++|++.+|.+.. .....+..+.+|++|++++|.+.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 3333 666666666654211111 11233 566666666666552 1223344555666666666666521
Q ss_pred --cCccCCCCCCccEEEcCCCcccCC----ccccccCCCCCceEEccCccccCCCCcccc-----CCCCCCEEEccCCcc
Q 035904 188 --IPKEIGNLTKLTELYLGYNKLQGE----IPQDLGNLAELEWLSLPQSFLTGTIPSSIF-----NLTSLLELDFSNNSL 256 (291)
Q Consensus 188 --~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~n~i 256 (291)
++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 222333445666666666665432 223344556666666666665532111111 235666666666666
Q ss_pred cccCchH---HHhhCccccEEEeecceee
Q 035904 257 TGSFRDD---LCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 257 ~~~~~~~---~~~~~~~L~~L~l~~n~l~ 282 (291)
++..... ....+++|+.+++++|.++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 5222211 2222456666666666664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=2.4e-16 Score=145.04 Aligned_cols=208 Identities=25% Similarity=0.294 Sum_probs=108.0
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhh------------
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFI------------ 118 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------ 118 (291)
+++.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|++.+|.+. .+|...
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCc
Confidence 56777777776663 333 2466777777777666 33432 234445544444443 222210
Q ss_pred ----hhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCC-
Q 035904 119 ----ISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIG- 193 (291)
Q Consensus 119 ----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~- 193 (291)
...+++|++|++++|.+. .++.. ..+|+.|++.+|.+.. +|. -..+|++|++++|.+.. +|....
T Consensus 294 Lt~LP~~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~lp~~ 363 (788)
T PRK15387 294 LTSLPVLPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS-LPTLPSE 363 (788)
T ss_pred cccccccccccceeECCCCccc-cCCCC----cccccccccccCcccc-ccc---cccccceEecCCCccCC-CCCCCcc
Confidence 001244555555555554 22220 1122233333333221 111 01245556665555552 221110
Q ss_pred ----------------CCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCccc
Q 035904 194 ----------------NLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 194 ----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
...+|+.|++++|.++ .+|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.++
T Consensus 364 L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 364 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred cceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc
Confidence 0134556666666655 23322 2456677777777663 3432 245677888888877
Q ss_pred ccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 258 GSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 258 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
.+|..++. +++|+.|++++|++++.+|.
T Consensus 436 -~LP~sl~~-L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 436 -RLPESLIH-LSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -ccChHHhh-ccCCCeEECCCCCCCchHHH
Confidence 67777665 88899999999998877654
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4e-19 Score=131.01 Aligned_cols=164 Identities=32% Similarity=0.551 Sum_probs=118.6
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
+-.+.+.+.|.+++|+++ .+|+.+..+.+|+.|++.+|.+. .+|..+ ..+++|++|+++-|++. .+|.++. .+|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfg-s~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFG-SFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccC-CCch
Confidence 335667777888888887 66777788888888888888877 677766 77777888887777776 6666643 7777
Q ss_pred ccEEEcccccccc-cCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEcc
Q 035904 150 LKSLALSANNFHG-QIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228 (291)
Q Consensus 150 L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 228 (291)
|+.|++.+|.+.+ .+|..|..+..|+.|.+++|.+. .+|..++++++|+.|.+..|.+. .+|..++.+.+|+.|++.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 7777777777653 45666777777777777777776 56666777777777777777765 567777777777777777
Q ss_pred CccccCCCCcccc
Q 035904 229 QSFLTGTIPSSIF 241 (291)
Q Consensus 229 ~~~~~~~~~~~l~ 241 (291)
+|+++ .+|..++
T Consensus 182 gnrl~-vlppel~ 193 (264)
T KOG0617|consen 182 GNRLT-VLPPELA 193 (264)
T ss_pred cceee-ecChhhh
Confidence 77776 5554443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=7.6e-18 Score=143.31 Aligned_cols=233 Identities=22% Similarity=0.223 Sum_probs=167.2
Q ss_pred CCceEEEEecCccccc------cCcccccCCCCCCEEeCCCCccccccCccccCCCC---ccEEEeecccCcCCCch---
Q 035904 49 THRVTALNISYFGLTG------TISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSIST---LKILILGDNQLSGSFPS--- 116 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~~~~~~--- 116 (291)
.+.+++++++++.+.. .++..+..+++|+.|++++|.+....+..+..+.+ |+.|++++|++.+....
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 4569999999987762 34456778999999999999987555555555544 99999999988631111
Q ss_pred hhhhcC-CCccEEEccCCccccccChh---hhccccCccEEEccccccccc----CccccccCCCCcEEEcccCcCcCc-
Q 035904 117 FIISNM-SSIRAIDCNYNSLSGELPAN---IFSYLPFLKSLALSANNFHGQ----IPSTLSNCKQLQMLSLSINDFTGA- 187 (291)
Q Consensus 117 ~~~~~l-~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~- 187 (291)
..+..+ ++|+.|++++|.+++..... .+..+++|++|++++|.+... ++..+..++.|++|++++|.+.+.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 123456 89999999999987433222 244567899999999988732 334456667999999999988633
Q ss_pred ---cCccCCCCCCccEEEcCCCcccCCcccccc-----CCCCCceEEccCccccCC----CCccccCCCCCCEEEccCCc
Q 035904 188 ---IPKEIGNLTKLTELYLGYNKLQGEIPQDLG-----NLAELEWLSLPQSFLTGT----IPSSIFNLTSLLELDFSNNS 255 (291)
Q Consensus 188 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~ 255 (291)
+...+..+++|+.|++++|.+++.....+. ..+.|+.|++.+|.+++. +...+..+++|+++++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 344567789999999999998753222222 247899999999998632 23445567899999999999
Q ss_pred ccccCchHHH---hhC-ccccEEEeeccee
Q 035904 256 LTGSFRDDLC---QRI-PLLQRFYMTNNHF 281 (291)
Q Consensus 256 i~~~~~~~~~---~~~-~~L~~L~l~~n~l 281 (291)
+++.....+. ... +.|+.+++.+|++
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 290 FGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 9865332222 224 6899999988764
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=3.4e-18 Score=141.09 Aligned_cols=212 Identities=22% Similarity=0.277 Sum_probs=173.0
Q ss_pred CCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccC-CccccccChhhhccccCccEE
Q 035904 75 SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNY-NSLSGELPANIFSYLPFLKSL 153 (291)
Q Consensus 75 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L 153 (291)
.-..++|..|+|+...+.+|..+++|+.|++++|.|+ .|.+.+|.+++++..|-+.+ |+|+ .++...|.++.+++.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5678899999999777889999999999999999998 78888889999998877766 8998 9999999999999999
Q ss_pred EcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc-------------------------
Q 035904 154 ALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL------------------------- 208 (291)
Q Consensus 154 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------- 208 (291)
.+.-|++.-.....+..++++..|.+.+|.+.......|..+..++.+++.-|.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9999998878888999999999999999988633223566666666655544431
Q ss_pred ------------------------------------cCCcc-ccccCCCCCceEEccCccccCCCCccccCCCCCCEEEc
Q 035904 209 ------------------------------------QGEIP-QDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDF 251 (291)
Q Consensus 209 ------------------------------------~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 251 (291)
....| ..|..+++|+.|++++|.++.+-..+|.....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 00111 23455789999999999999888899999999999999
Q ss_pred cCCcccccCchHHHhhCccccEEEeecceeeeeCCCCC
Q 035904 252 SNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 252 ~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
..|++. .+....+.++..|+.|++.+|+|+...|..|
T Consensus 306 ~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 306 TRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred CcchHH-HHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 999987 5566677779999999999999996655544
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=2e-18 Score=127.30 Aligned_cols=163 Identities=31% Similarity=0.547 Sum_probs=142.0
Q ss_pred ccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCC
Q 035904 94 IFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQ 173 (291)
Q Consensus 94 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 173 (291)
+..+.+++.|.++.|+++ .+|+.+ ..+.+|+.|++.+|++. .+|..+. .+++|++|++.-|++. .+|..|..++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCch
Confidence 556788999999999998 888887 88999999999999998 8888764 8999999999999887 78999999999
Q ss_pred CcEEEcccCcCcC-ccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEcc
Q 035904 174 LQMLSLSINDFTG-AIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFS 252 (291)
Q Consensus 174 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 252 (291)
|+.||+.+|.+.+ ..|..|-.+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+. ..|..++.+++|++|.++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 9999999999874 46777888899999999999987 78888999999999999999887 678888889999999999
Q ss_pred CCcccccCchHH
Q 035904 253 NNSLTGSFRDDL 264 (291)
Q Consensus 253 ~n~i~~~~~~~~ 264 (291)
+|+++ .+|..+
T Consensus 182 gnrl~-vlppel 192 (264)
T KOG0617|consen 182 GNRLT-VLPPEL 192 (264)
T ss_pred cceee-ecChhh
Confidence 99988 555443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=2.9e-18 Score=154.74 Aligned_cols=224 Identities=32% Similarity=0.378 Sum_probs=179.4
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+++.|..++|.++...+. ..-.+|+++++++++++ .+|.-+..+.+|+.+....|.+. .+|..+ ..+++|+.|
T Consensus 218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri-~~~~~L~~l 292 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRI-SRITSLVSL 292 (1081)
T ss_pred CcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHH-hhhhhHHHH
Confidence 67888899999988733221 23457999999999999 67788899999999999999997 888876 778999999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccc-------------------------cCCCCcEEEcccCc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLS-------------------------NCKQLQMLSLSIND 183 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------------------------~~~~L~~L~l~~~~ 183 (291)
.+..|.+. .+++... ....|++|++..|.+....+..+. .++.|+.|.+.+|.
T Consensus 293 ~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred Hhhhhhhh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 99999998 7777643 688999999999988732221111 12346677778888
Q ss_pred CcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchH
Q 035904 184 FTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDD 263 (291)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 263 (291)
+++..-..+.++.+|+.|++++|++.......+.++..|+.|+++||.++ .+|..+..|..|++|....|.+. .+| .
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 87665556788899999999999998555567788899999999999998 66788888999999999999888 677 5
Q ss_pred HHhhCccccEEEeecceeee
Q 035904 264 LCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 264 ~~~~~~~L~~L~l~~n~l~~ 283 (291)
+.. ++.|+.+|++.|+++.
T Consensus 448 ~~~-l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 448 LAQ-LPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhh-cCcceEEecccchhhh
Confidence 555 8999999999998864
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=2.2e-15 Score=138.70 Aligned_cols=206 Identities=28% Similarity=0.325 Sum_probs=119.3
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|. ..++|++|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 34567899999998 5776664 48999999999998 4564 3589999999999998 6664 245677777
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcC-------------------ccCc
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTG-------------------AIPK 190 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------------------~~~~ 190 (291)
+++|.+. .++. ...+|+.|++.+|.+. .+|. ..++|+.|++++|.+.. .+|.
T Consensus 269 Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~ 339 (788)
T PRK15387 269 IFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT 339 (788)
T ss_pred ccCCchh-hhhh----chhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCCcccccccccccCccccccc
Confidence 7777665 4433 1234555555555544 2222 12345555555554442 1221
Q ss_pred cCCCCCCccEEEcCCCcccCCccccccC-----------------CCCCceEEccCccccCCCCccccCCCCCCEEEccC
Q 035904 191 EIGNLTKLTELYLGYNKLQGEIPQDLGN-----------------LAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSN 253 (291)
Q Consensus 191 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 253 (291)
. ..+|+.|++++|.++. +|..... ..+|+.|++++|.+.. +|.. .++|+.|++++
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSG 411 (788)
T ss_pred c---ccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccC
Confidence 1 1367778888877763 3322111 1234444444444442 2211 13455566666
Q ss_pred CcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 254 NSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 254 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
|.+. .+|.. +.+|+.|++++|+++ .||+.|+
T Consensus 412 N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~ 442 (788)
T PRK15387 412 NRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLI 442 (788)
T ss_pred CcCC-CCCcc----hhhhhhhhhccCccc-ccChHHh
Confidence 6555 33321 235666677777766 6666543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=1.6e-14 Score=132.63 Aligned_cols=148 Identities=32% Similarity=0.543 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHhccCCCCccCCCccCCCCcc-----ccceeEeecCC----CceEEEEecCccccccCcccccCCCC
Q 035904 5 NTTDQQALLALKARITSDPSNLLAKNWTSITSVC-----SWIGITCDVST----HRVTALNISYFGLTGTISSQVGNLSS 75 (291)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~~l~~ 75 (291)
.++|.++|+.+|..+. ++.. .. |.. ++| .|.|+.|.... ..++.|+|+++.+.+.+|..+..+++
T Consensus 370 ~~~~~~aL~~~k~~~~-~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 370 LLEEVSALQTLKSSLG-LPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred CchHHHHHHHHHHhcC-Cccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 4568999999999984 3322 24 865 566 69999996322 25999999999999999999999999
Q ss_pred CCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEc
Q 035904 76 LQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLAL 155 (291)
Q Consensus 76 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 155 (291)
|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..+++|++|++++|.+.+.+|..+.....++..+++
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 9999999999999999999999999999999999998888876 899999999999999999999877644456677777
Q ss_pred cccc
Q 035904 156 SANN 159 (291)
Q Consensus 156 ~~~~ 159 (291)
.+|.
T Consensus 523 ~~N~ 526 (623)
T PLN03150 523 TDNA 526 (623)
T ss_pred cCCc
Confidence 7764
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=6.2e-14 Score=114.42 Aligned_cols=233 Identities=19% Similarity=0.242 Sum_probs=168.6
Q ss_pred CCceEEEEecCcccccc----CcccccCCCCCCEEeCCCC---ccccccCc-------cccCCCCccEEEeecccCcCCC
Q 035904 49 THRVTALNISYFGLTGT----ISSQVGNLSSLQTLDLSHN---QFSGTIPS-------SIFSISTLKILILGDNQLSGSF 114 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~---~~~~~~~~-------~l~~l~~L~~L~l~~~~~~~~~ 114 (291)
...++.|++++|.+... +...+.+.++|+..++++- .....+|. ++-.+++|+.+++++|-+.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 45799999999988653 5556778889999998864 22233443 3456789999999999875333
Q ss_pred chh---hhhcCCCccEEEccCCccccccChh------------hhccccCccEEEcccccccc----cCccccccCCCCc
Q 035904 115 PSF---IISNMSSIRAIDCNYNSLSGELPAN------------IFSYLPFLKSLALSANNFHG----QIPSTLSNCKQLQ 175 (291)
Q Consensus 115 ~~~---~~~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~ 175 (291)
+.. ++..+..|++|.+.+|++....... ....-++|+++...+|++.. .....+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 322 3567899999999999986221111 12234689999999998763 2345677788999
Q ss_pred EEEcccCcCcCc----cCccCCCCCCccEEEcCCCcccCC----ccccccCCCCCceEEccCccccCCCCcccc-----C
Q 035904 176 MLSLSINDFTGA----IPKEIGNLTKLTELYLGYNKLQGE----IPQDLGNLAELEWLSLPQSFLTGTIPSSIF-----N 242 (291)
Q Consensus 176 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~ 242 (291)
.+.+..|.+... ....+..+++|+.|++.+|.++.. +...+..+++|+.+++++|.+.......+. .
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 999999988522 235677899999999999988743 345667788999999999998765544332 4
Q ss_pred CCCCCEEEccCCcccccCchHHH---hhCccccEEEeeccee
Q 035904 243 LTSLLELDFSNNSLTGSFRDDLC---QRIPLLQRFYMTNNHF 281 (291)
Q Consensus 243 ~~~L~~L~l~~n~i~~~~~~~~~---~~~~~L~~L~l~~n~l 281 (291)
.+.|+.|.+.+|.|+......+. ...|.|..|+|++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 68999999999998853332221 2367899999999988
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.1e-13 Score=111.27 Aligned_cols=209 Identities=22% Similarity=0.213 Sum_probs=114.3
Q ss_pred CCceEEEEecCccccccCc-ccccCCCCCCEEeCCCCccc--cccCccccCCCCccEEEeecccCcCCCchhhhhcCCCc
Q 035904 49 THRVTALNISYFGLTGTIS-SQVGNLSSLQTLDLSHNQFS--GTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSI 125 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 125 (291)
..+|+++.+.++.+..... .....|++++.|||++|=+. ..+......+|+|+.|+++.|++..-.....-..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3466777777765543221 34556777777777776444 12333444567777777777766422222222356667
Q ss_pred cEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCcc-CccCCCCCCccEEEcC
Q 035904 126 RAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAI-PKEIGNLTKLTELYLG 204 (291)
Q Consensus 126 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~ 204 (291)
+.|.++.|++++.-...+...+|+|+.|++..|............+..|+.|++++|.+-... -.....++.|..|.++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 777777777764444444446677777777776421122222334556777777777664221 1234556666666776
Q ss_pred CCcccCC-cccc-----ccCCCCCceEEccCccccCC-CCccccCCCCCCEEEccCCccc
Q 035904 205 YNKLQGE-IPQD-----LGNLAELEWLSLPQSFLTGT-IPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 205 ~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
.+.+.+. .|+. ....++|++|++..|++.+. ....+..+++|+.|.+..|.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666532 2222 22345666666666666421 1123334455666665565554
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.9e-13 Score=111.75 Aligned_cols=210 Identities=20% Similarity=0.201 Sum_probs=149.9
Q ss_pred cCCCCCCEEeCCCCccccccC--ccccCCCCccEEEeecccCcCCCc--hhhhhcCCCccEEEccCCccccccChhhhcc
Q 035904 71 GNLSSLQTLDLSHNQFSGTIP--SSIFSISTLKILILGDNQLSGSFP--SFIISNMSSIRAIDCNYNSLSGELPANIFSY 146 (291)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 146 (291)
.++.+|+.+.|.++.+. ..+ .....|++++.|+++.|=+. .+. ..+...+++|+.|+++.|++.-......-..
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 46788999999988776 222 45667999999999998665 322 2345789999999999998863333322235
Q ss_pred ccCccEEEcccccccc-cCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCc-cccccCCCCCce
Q 035904 147 LPFLKSLALSANNFHG-QIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEI-PQDLGNLAELEW 224 (291)
Q Consensus 147 ~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 224 (291)
++.|+.|.++.|.++. .+-..+..+|+|+.|.+..|...........-+..|+.|++++|.+.+.. ......++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 6889999999998873 22344567899999999999532232333445678999999999886331 245677889999
Q ss_pred EEccCccccCCCC-cc-----ccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 225 LSLPQSFLTGTIP-SS-----IFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 225 L~l~~~~~~~~~~-~~-----l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
|+++.+.+.+... .. ...++.|++|++..|+|.++-...-...+++|+.|.+..|.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 9999998875422 21 2357899999999999975433333333788888888888775
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.7e-13 Score=118.44 Aligned_cols=195 Identities=28% Similarity=0.482 Sum_probs=137.7
Q ss_pred CCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccE
Q 035904 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKS 152 (291)
Q Consensus 73 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 152 (291)
+.--...|++.|++. ++|..+..+-.|+.+.++.|.+- .+|..+ +.+..|++++++.|+++ .+|..++ .+| |+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhh-cCChhhh-cCc-cee
Confidence 334456677777777 67777777777888888877775 666665 77778888888888877 7777665 444 777
Q ss_pred EEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccc
Q 035904 153 LALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFL 232 (291)
Q Consensus 153 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 232 (291)
|.++.|+++ .+|..+.....|..|+.+.|.+. ..|..+..+.+|+.|.+..|.+. .+|..+..+ .|..||++.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 777777777 56666667777788888888776 45666777777887878777776 456555543 477888888877
Q ss_pred cCCCCccccCCCCCCEEEccCCcccccCchHHHhh--CccccEEEeecc
Q 035904 233 TGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQR--IPLLQRFYMTNN 279 (291)
Q Consensus 233 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~~L~~L~l~~n 279 (291)
. .+|-.|.++.+|++|-|.+|++. ..|..+|.. ..-.++|+++-|
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 6 67777777888888888888877 556555531 223456666665
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.7e-11 Score=107.48 Aligned_cols=176 Identities=36% Similarity=0.556 Sum_probs=92.0
Q ss_pred CCCCCCEEeCCCCccccccCccccCCC-CccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCc
Q 035904 72 NLSSLQTLDLSHNQFSGTIPSSIFSIS-TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFL 150 (291)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 150 (291)
.++.++.+++.+++++ .++....... +|+.|++++|.+. .++..+ ..+++|+.|++++|++. .++.... ..++|
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L 188 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLS-DLPKLLS-NLSNL 188 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCchhh-hhhhhhh-hhhhh
Confidence 3455666666666655 4444444442 6666666666655 443222 55666666666666665 4444321 45556
Q ss_pred cEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCc
Q 035904 151 KSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS 230 (291)
Q Consensus 151 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 230 (291)
+.|++++|.+. .+|........|+++.+++|... ..+..+..+.++..+.+.++++. ..+..+..++.+++|++++|
T Consensus 189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence 66666666655 33333333344566666665432 23333445555555555555554 22444555555666666666
Q ss_pred cccCCCCccccCCCCCCEEEccCCccc
Q 035904 231 FLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
.+..... +....+++.|+++++.+.
T Consensus 266 ~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 266 QISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccc--ccccCccCEEeccCcccc
Confidence 6553222 455556666666665554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.2e-11 Score=108.37 Aligned_cols=197 Identities=32% Similarity=0.506 Sum_probs=152.0
Q ss_pred EEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCC-CccEEEccCCccccccChhhhccccCccEEEcc
Q 035904 78 TLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMS-SIRAIDCNYNSLSGELPANIFSYLPFLKSLALS 156 (291)
Q Consensus 78 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 156 (291)
.+++..+.+. .....+...+.++.|++.++.++ .++... ..+. +|+.|++++|.+. .++..+ ..+++|+.|++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchh-hhhhhh-hccccccccccC
Confidence 4666666664 23444556688999999999998 777654 5564 9999999999998 665443 389999999999
Q ss_pred cccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCC
Q 035904 157 ANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236 (291)
Q Consensus 157 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 236 (291)
.|++. ..+......+.|+.|++++|.+. .+|........|+.+.+++|... ..+..+..++++..+.+.+|++. ..
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 99998 44555558899999999999998 55554445667999999999644 45667788888999999998886 33
Q ss_pred CccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 237 PSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 237 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
+..+..++.+++|++++|.++. ++. .....+++.|+++++.++...|
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cchhccccccceeccccccccc-ccc--ccccCccCEEeccCccccccch
Confidence 5667788889999999999984 433 3348899999999998874444
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=2.1e-11 Score=93.17 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=33.8
Q ss_pred ceEEEEecCccccccCccccc-CCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 51 RVTALNISYFGLTGTISSQVG-NLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
++++|+++++.++.. +.+. .+.+|+.|++++|.++ .+. .+..+++|+.|++++|.+. .+...+...+++|++|.
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 456666666666532 1233 3556666666666665 222 3455666666666666665 44433323456666666
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccC---ccccccCCCCcEEE
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQI---PSTLSNCKQLQMLS 178 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~ 178 (291)
+++|++...-.-.....+++|+.|++.+|.+.... ...+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66666542212122335556666666655554210 11234455555554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=3.1e-12 Score=102.92 Aligned_cols=202 Identities=23% Similarity=0.269 Sum_probs=127.6
Q ss_pred CCceEEEEecCcc--------ccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcC---CCchh
Q 035904 49 THRVTALNISYFG--------LTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSG---SFPSF 117 (291)
Q Consensus 49 ~~~l~~L~l~~~~--------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~ 117 (291)
..+++.|..++.. +...+|-.+..+++|+.+.+++|.-. .+......-|.|+++.+.+..+.. -+|+.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~ 259 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPET 259 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchh
Confidence 3478888888752 11234445667889999999988654 233333344778888887765431 12221
Q ss_pred hh-------------------hcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEE
Q 035904 118 II-------------------SNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLS 178 (291)
Q Consensus 118 ~~-------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 178 (291)
.. ...+.|+.+++++|.++ .+.+++- -.|.++.|++++|.+... ..+..+++|+.||
T Consensus 260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LD 335 (490)
T KOG1259|consen 260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLD 335 (490)
T ss_pred hhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEee
Confidence 10 11234777777777776 6666542 457777788877777632 3467777777888
Q ss_pred cccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCC-CCccccCCCCCCEEEccCCccc
Q 035904 179 LSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGT-IPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
+++|.++ ....+-..+.+++.|.+++|.+.. .+.+..+-+|..|++.+|+|... ....++.+|.|+.+.|.+|++.
T Consensus 336 LS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 336 LSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8777776 334444466777777777777652 23345556677777777777642 2355667777777777777776
Q ss_pred c
Q 035904 258 G 258 (291)
Q Consensus 258 ~ 258 (291)
+
T Consensus 413 ~ 413 (490)
T KOG1259|consen 413 G 413 (490)
T ss_pred c
Confidence 3
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.5e-11 Score=93.97 Aligned_cols=109 Identities=28% Similarity=0.407 Sum_probs=33.1
Q ss_pred cCCCCCCEEeCCCCccccccCcccc-CCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 71 GNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
.+...++.|+|.+|.|+ .+. .+. .+.+|+.|++++|.+. .++. +..+++|++|++++|.++ .+...+...+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 34456677777777776 332 243 4667777777777776 4443 356777777777777776 554444445677
Q ss_pred ccEEEcccccccccC-ccccccCCCCcEEEcccCcCc
Q 035904 150 LKSLALSANNFHGQI-PSTLSNCKQLQMLSLSINDFT 185 (291)
Q Consensus 150 L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 185 (291)
|++|++++|.+.... -..+..+++|+.|++.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777777765321 134555666666666666665
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=6.4e-13 Score=114.99 Aligned_cols=169 Identities=29% Similarity=0.451 Sum_probs=96.2
Q ss_pred EEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCC
Q 035904 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133 (291)
Q Consensus 54 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 133 (291)
..|++.|.+. .+|..+..|-.|+.+.+++|.+. .+|..+..+..|++++++.|.+. .+|..+ +.++ |+.|.+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL-CDLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh-hcCc-ceeEEEecC
Confidence 3444444444 44555555555666666666555 55666666666666666666665 555544 4343 566666666
Q ss_pred ccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCcc
Q 035904 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIP 213 (291)
Q Consensus 134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 213 (291)
+++ .+|..+. ..+.|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+. .+|+.+..+ .|..||+++|++. .+|
T Consensus 154 kl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 665 5555554 5556666666666655 34445556666666666666655 334434422 3556666666665 556
Q ss_pred ccccCCCCCceEEccCcccc
Q 035904 214 QDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 214 ~~~~~~~~L~~L~l~~~~~~ 233 (291)
-.|..+++|++|-|.+|.+.
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 56666666666666666655
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=5.4e-12 Score=103.26 Aligned_cols=216 Identities=20% Similarity=0.260 Sum_probs=158.4
Q ss_pred cccccCCCCCCEEeCCCCccccc----cCccccCCCCccEEEeecccCcC----CCchh------hhhcCCCccEEEccC
Q 035904 67 SSQVGNLSSLQTLDLSHNQFSGT----IPSSIFSISTLKILILGDNQLSG----SFPSF------IISNMSSIRAIDCNY 132 (291)
Q Consensus 67 ~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~------~~~~l~~L~~L~l~~ 132 (291)
-+.+..+..++.++|++|.+... +...+.+.+.|+..++++- ++| .+|.. ++..+++|++|++++
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34466788999999999988733 4455566778888888753 222 33333 245678999999999
Q ss_pred CccccccCh---hhhccccCccEEEcccccccccC-------------ccccccCCCCcEEEcccCcCcCc----cCccC
Q 035904 133 NSLSGELPA---NIFSYLPFLKSLALSANNFHGQI-------------PSTLSNCKQLQMLSLSINDFTGA----IPKEI 192 (291)
Q Consensus 133 ~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l~~~~~~~~----~~~~~ 192 (291)
|-+....+. .+.+.+..|++|++.+|.+...- ......-+.|+++..+.|.+.+. ....|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 987644443 34567889999999999876321 12234457899999999988642 33457
Q ss_pred CCCCCccEEEcCCCcccCC----ccccccCCCCCceEEccCccccCC----CCccccCCCCCCEEEccCCcccccCch--
Q 035904 193 GNLTKLTELYLGYNKLQGE----IPQDLGNLAELEWLSLPQSFLTGT----IPSSIFNLTSLLELDFSNNSLTGSFRD-- 262 (291)
Q Consensus 193 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~-- 262 (291)
...+.|+.+.+..|.|... +...+..+++|+.|++.+|.++.. +...+..+++|++|++++|.+......
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 7788999999999987632 345678899999999999998753 334556789999999999998865443
Q ss_pred --HHHhhCccccEEEeecceeee
Q 035904 263 --DLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 263 --~~~~~~~~L~~L~l~~n~l~~ 283 (291)
.+....|+|+.|.+.+|.++.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHHhccCCCCceeccCcchhHH
Confidence 344457899999999998863
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=1.9e-10 Score=105.94 Aligned_cols=113 Identities=35% Similarity=0.513 Sum_probs=93.6
Q ss_pred CcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccC
Q 035904 174 LQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSN 253 (291)
Q Consensus 174 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 253 (291)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888999999999988888888888888999999999988888888888888999999999
Q ss_pred CcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 254 NSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 254 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
|.+.+.+|..+.....++..+++.+|...+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 998888888776544567788888885443444
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=3.3e-10 Score=106.93 Aligned_cols=108 Identities=25% Similarity=0.270 Sum_probs=85.8
Q ss_pred CCceEEEEecCcc--ccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCcc
Q 035904 49 THRVTALNISYFG--LTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIR 126 (291)
Q Consensus 49 ~~~l~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 126 (291)
.++++.|-+..+. +.......|..+|.|+.||+++|.-.+.+|..++.+-+|++|+++++.+. .+|.++ .++..|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHHhhh
Confidence 4468888888885 55455566888999999999987665689999999999999999999987 888887 8899999
Q ss_pred EEEccCCccccccChhhhccccCccEEEccccc
Q 035904 127 AIDCNYNSLSGELPANIFSYLPFLKSLALSANN 159 (291)
Q Consensus 127 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (291)
+|++..++.. .....+...+++|++|.+....
T Consensus 622 ~Lnl~~~~~l-~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRL-ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eecccccccc-ccccchhhhcccccEEEeeccc
Confidence 9999888765 3335555568899999886554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.7e-09 Score=68.15 Aligned_cols=59 Identities=31% Similarity=0.457 Sum_probs=32.8
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeeccc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQ 109 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 109 (291)
+|++|++++|.++...+..|..+++|++|++++|++....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555566555554444455555555555555555554444555555555555555554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.4e-09 Score=68.47 Aligned_cols=60 Identities=33% Similarity=0.536 Sum_probs=33.2
Q ss_pred CCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCc
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNS 134 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 134 (291)
|+|++|++++|++....+..|.++++|++|++++|++. .++...|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 34556666666555333445555666666666655554 4454445555555555555554
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=5e-10 Score=90.39 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=106.2
Q ss_pred cCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCC
Q 035904 95 FSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQL 174 (291)
Q Consensus 95 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 174 (291)
..+..|+.+++++|.|+ .+.+.. +-.|.++.|+++.|++. .+.. .+.+++|++|++++|.++ .....-.++-++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-eehh--hhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 34567999999999998 777776 77899999999999997 5444 457899999999999887 333344567789
Q ss_pred cEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCC-ccccccCCCCCceEEccCccccCC
Q 035904 175 QMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGE-IPQDLGNLAELEWLSLPQSFLTGT 235 (291)
Q Consensus 175 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 235 (291)
++|.++.|.+... ..++.+.+|..|++.+|++... --..+++++.|+++.+.+|++...
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999999988632 3467788999999999998732 234578889999999999998743
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.7e-09 Score=87.23 Aligned_cols=187 Identities=18% Similarity=0.184 Sum_probs=110.1
Q ss_pred cCCCCCCEEeCCCCccc--cccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhcccc
Q 035904 71 GNLSSLQTLDLSHNQFS--GTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLP 148 (291)
Q Consensus 71 ~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 148 (291)
..++.++.+||.+|.|. .++...+.++|.|++|+++.|.+...+... .....+|+.|.+.++++.+.-...+...+|
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 35677888888888777 345556667888888888888775222221 135667888888888887766666667777
Q ss_pred CccEEEcccccccccCc--ccc-ccCCCCcEEEcccCcCcC--ccCccCCCCCCccEEEcCCCcccCCc-cccccCCCCC
Q 035904 149 FLKSLALSANNFHGQIP--STL-SNCKQLQMLSLSINDFTG--AIPKEIGNLTKLTELYLGYNKLQGEI-PQDLGNLAEL 222 (291)
Q Consensus 149 ~L~~L~l~~~~~~~~~~--~~l-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 222 (291)
.+++|+++.|.+..... ... ...+.+++|.+..|.... .......-++++..+.+..|.+.... ...+...+.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 88888777774431110 001 112344555555544321 01111223466777777777664322 1233344556
Q ss_pred ceEEccCccccCCC-CccccCCCCCCEEEccCCcccc
Q 035904 223 EWLSLPQSFLTGTI-PSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 223 ~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
..|+++.+++.... ...+.++++|+.|.++++++.+
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 67777777765321 2455567777777777777764
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.74 E-value=1.3e-08 Score=58.96 Aligned_cols=41 Identities=46% Similarity=0.975 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHhccCCCCccCCCccCC--CCccccceeEee
Q 035904 5 NTTDQQALLALKARITSDPSNLLAKNWTSI--TSVCSWIGITCD 46 (291)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~~~ 46 (291)
+++|.++|++||+++.++|...+.. |+.. .++|.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 4789999999999997778777777 9997 799999999995
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=2.2e-10 Score=102.33 Aligned_cols=181 Identities=28% Similarity=0.323 Sum_probs=99.7
Q ss_pred CccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccc----------cccChhhhccccCccEEEcccccc
Q 035904 91 PSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLS----------GELPANIFSYLPFLKSLALSANNF 160 (291)
Q Consensus 91 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------~~~~~~~~~~~~~L~~L~l~~~~~ 160 (291)
|-.+..+..|+.|.+.+|.+.. ..++..--..|++|...+. ++ |.+.... .+..|.+.+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP--VWNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence 4456666777777777776641 1111111123444433211 11 1111111 123455666666666
Q ss_pred cccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccc
Q 035904 161 HGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSI 240 (291)
Q Consensus 161 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 240 (291)
. .+..++.-++.+++|+++.|.+.... .+..++.|++||++.|.+. .+|..-..-..|+.|.+.+|.++.. ..+
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhH
Confidence 5 44556666677777777777776332 5666777777777777766 3343222223477777777766532 234
Q ss_pred cCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 241 FNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 241 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
.++.+|+.||+++|.+.+.--......+..|+.|+|.||++.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 566777777777777665332223333566777777777764
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.73 E-value=1.9e-09 Score=85.90 Aligned_cols=234 Identities=17% Similarity=0.187 Sum_probs=138.6
Q ss_pred CCceEEEEecCcccccc----CcccccCCCCCCEEeCCCCccc---cccC-------ccccCCCCccEEEeecccCcCCC
Q 035904 49 THRVTALNISYFGLTGT----ISSQVGNLSSLQTLDLSHNQFS---GTIP-------SSIFSISTLKILILGDNQLSGSF 114 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~~~-------~~l~~l~~L~~L~l~~~~~~~~~ 114 (291)
...++++++++|.+... +...+.+-++|+..+++.--.. ..++ +++.+||+|+..++++|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 34688899999988654 4445566788888888764221 2222 44567899999999998876455
Q ss_pred chhh---hhcCCCccEEEccCCccccc----cChhh--------hccccCccEEEccccccccc----CccccccCCCCc
Q 035904 115 PSFI---ISNMSSIRAIDCNYNSLSGE----LPANI--------FSYLPFLKSLALSANNFHGQ----IPSTLSNCKQLQ 175 (291)
Q Consensus 115 ~~~~---~~~l~~L~~L~l~~~~~~~~----~~~~~--------~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~ 175 (291)
|+.. +...+.|.+|.+++|++... +...+ ...-|.|+++...+|++... ....+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 5433 45667889999998887521 11111 12346678887777776521 112233445677
Q ss_pred EEEcccCcCcCcc-----CccCCCCCCccEEEcCCCcccCC----ccccccCCCCCceEEccCccccCCCCcccc-----
Q 035904 176 MLSLSINDFTGAI-----PKEIGNLTKLTELYLGYNKLQGE----IPQDLGNLAELEWLSLPQSFLTGTIPSSIF----- 241 (291)
Q Consensus 176 ~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----- 241 (291)
.+.+..|.+.... ...+..+.+|+.|++.+|.++.. +..++..++.|+.|.+.+|-+......++.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 7777777764221 11223456777777777776632 233445566677777777766544333221
Q ss_pred -CCCCCCEEEccCCcccccCch------HHHhhCccccEEEeecceee
Q 035904 242 -NLTSLLELDFSNNSLTGSFRD------DLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 242 -~~~~L~~L~l~~n~i~~~~~~------~~~~~~~~L~~L~l~~n~l~ 282 (291)
..++|..|...+|.+.+.+.. -.-...|-|..|.+.+|.+.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 246667777777655432221 11123455666666666654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=6.6e-10 Score=97.87 Aligned_cols=128 Identities=30% Similarity=0.470 Sum_probs=58.0
Q ss_pred CCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccE
Q 035904 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKS 152 (291)
Q Consensus 73 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 152 (291)
+..++.+.+..|.+. .....+..+.+|+.+++++|++. .+... +..+++|++|++++|.++ .+.. ...++.|+.
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccc-hhhhhcchheeccccccc-cccc--hhhccchhh
Confidence 344444444444444 22233444555555555555554 22221 144555555555555554 2222 123444555
Q ss_pred EEcccccccccCccccccCCCCcEEEcccCcCcCccC-ccCCCCCCccEEEcCCCccc
Q 035904 153 LALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIP-KEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 153 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 209 (291)
|++.+|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 55555555421 233335555555555555543222 1 234445555555555443
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.5e-09 Score=87.54 Aligned_cols=213 Identities=18% Similarity=0.153 Sum_probs=126.7
Q ss_pred cCCCCCCEEeCCCCcccc--ccCccccCCCCccEEEeecccCcCCCc--hhhhhcCCCccEEEccCCccccccChhhhcc
Q 035904 71 GNLSSLQTLDLSHNQFSG--TIPSSIFSISTLKILILGDNQLSGSFP--SFIISNMSSIRAIDCNYNSLSGELPANIFSY 146 (291)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 146 (291)
.....++.+.+-++.|.. .....-..+..++.+++.+|.++ ... ..++.++|.|+.|+++.|.+...+ ..+...
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p 119 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLP 119 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccc
Confidence 344455566666665552 12222234667888888888876 222 234577888888888888776222 222125
Q ss_pred ccCccEEEcccccccc-cCccccccCCCCcEEEcccCcCcCc--cCccCCCC-CCccEEEcCCCcccC--CccccccCCC
Q 035904 147 LPFLKSLALSANNFHG-QIPSTLSNCKQLQMLSLSINDFTGA--IPKEIGNL-TKLTELYLGYNKLQG--EIPQDLGNLA 220 (291)
Q Consensus 147 ~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~~~~~~ 220 (291)
..+|++|.+.+..+.- .....+..+|.++.|+++.|.+... ..+..... +.+++|+...|.... ........++
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 5678888887776542 2334556777788888888754321 11222222 356666666665431 1111122346
Q ss_pred CCceEEccCccccCCC-CccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeC
Q 035904 221 ELEWLSLPQSFLTGTI-PSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSI 285 (291)
Q Consensus 221 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 285 (291)
++..+.+..|++.... ......++.+..|+|+.+.|..+...+-..+++.|..|+++++++..++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 6777777777765432 2345566777778888888877666666666888888888888776443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.6e-10 Score=91.03 Aligned_cols=179 Identities=21% Similarity=0.220 Sum_probs=98.0
Q ss_pred CCCEEeCCCCccc-cccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCC-ccccccChhhhccccCccE
Q 035904 75 SLQTLDLSHNQFS-GTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN-SLSGELPANIFSYLPFLKS 152 (291)
Q Consensus 75 ~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~ 152 (291)
.|++|||+...++ ..+...++.|.+|+.|.++++.+.+.+-..+ .+-.+|+.|+++.+ +++.....-++.+|..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4666777666665 2334455566667777777766654444433 55566777776664 3332233334556666777
Q ss_pred EEccccccccc-Ccccccc-CCCCcEEEcccCcCc---CccCccCCCCCCccEEEcCCCcc-cCCccccccCCCCCceEE
Q 035904 153 LALSANNFHGQ-IPSTLSN-CKQLQMLSLSINDFT---GAIPKEIGNLTKLTELYLGYNKL-QGEIPQDLGNLAELEWLS 226 (291)
Q Consensus 153 L~l~~~~~~~~-~~~~l~~-~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~ 226 (291)
|+++.|.+... +...+.+ -+.|+.|+++++.-. ..+.-....+++|.+||+++|.. +.....+|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77766654421 1111111 134556666654321 01111233567777777777643 333334556667777777
Q ss_pred ccCccccCCCCc---cccCCCCCCEEEccCCcc
Q 035904 227 LPQSFLTGTIPS---SIFNLTSLLELDFSNNSL 256 (291)
Q Consensus 227 l~~~~~~~~~~~---~l~~~~~L~~L~l~~n~i 256 (291)
++.|.. ..|. .+...+.|.+|++.++--
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 777753 2232 334567788888777643
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.2e-10 Score=92.21 Aligned_cols=178 Identities=21% Similarity=0.178 Sum_probs=122.7
Q ss_pred CccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEccccc-ccc-cCccccccCCCCcE
Q 035904 99 TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANN-FHG-QIPSTLSNCKQLQM 176 (291)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~L~~ 176 (291)
+|++|++++..++..--..++..+.+|+.|.+.++++.+.+...+. +-.+|+.|+++.+. +++ ...-.+..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5888999988887555666778889999999999988866665554 66789999998765 221 12234568889999
Q ss_pred EEcccCcCcCcc-CccCC-CCCCccEEEcCCCccc---CCccccccCCCCCceEEccCcc-ccCCCCccccCCCCCCEEE
Q 035904 177 LSLSINDFTGAI-PKEIG-NLTKLTELYLGYNKLQ---GEIPQDLGNLAELEWLSLPQSF-LTGTIPSSIFNLTSLLELD 250 (291)
Q Consensus 177 L~l~~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~ 250 (291)
|+++.|.+.... ...+. --++|..|+++|+.-. ..+......+++|..||+++|. +.......+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999998875321 11111 1257888888887422 1333445678999999999884 4444445667889999999
Q ss_pred ccCCcccccCchHH--HhhCccccEEEeecc
Q 035904 251 FSNNSLTGSFRDDL--CQRIPLLQRFYMTNN 279 (291)
Q Consensus 251 l~~n~i~~~~~~~~--~~~~~~L~~L~l~~n 279 (291)
++.|... +|..+ +.+.|+|.+|++.++
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 9998543 33322 234788999998876
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=2.3e-09 Score=94.50 Aligned_cols=223 Identities=25% Similarity=0.320 Sum_probs=117.1
Q ss_pred eEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEcc
Q 035904 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131 (291)
Q Consensus 52 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 131 (291)
+..+++..+.+.. .-..+..+++|+.+++.+|.+. .+...+..+++|++|++++|.|. .+.. +..++.|+.|+++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccc--hhhccchhhheec
Confidence 3344444444432 2223556677777777777666 33333556677777777777766 3332 2455557777777
Q ss_pred CCccccccChhhhccccCccEEEcccccccccCc-cccccCCCCcEEEcccCcCcCccC--------------------c
Q 035904 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIP-STLSNCKQLQMLSLSINDFTGAIP--------------------K 190 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--------------------~ 190 (291)
+|.+. .+.. +..+++|+.+++.+|.+...-. . ...+.+++.+.+.+|.+..... .
T Consensus 149 ~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 149 GNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence 77665 3332 2236666677777766653322 1 3555566666666665532100 0
Q ss_pred cCCCCCC--ccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCccccc---CchHHH
Q 035904 191 EIGNLTK--LTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGS---FRDDLC 265 (291)
Q Consensus 191 ~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~---~~~~~~ 265 (291)
.+..... |+.+++.++.+. ..+..+..+..+..+++.++.+... ..+.....+..+....+++... ......
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYIT 301 (414)
T ss_pred CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccc
Confidence 0111111 566666666665 2223445556677777776666422 1233445555666666655421 111112
Q ss_pred hhCccccEEEeecceeeeeCC
Q 035904 266 QRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 266 ~~~~~L~~L~l~~n~l~~~ip 286 (291)
...+.++.+.+.+++.....+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 302 SAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccCccccccc
Confidence 335667777777776654333
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=6.8e-08 Score=91.56 Aligned_cols=105 Identities=27% Similarity=0.313 Sum_probs=48.7
Q ss_pred CCCCEEeCCCCc--cccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCcc
Q 035904 74 SSLQTLDLSHNQ--FSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLK 151 (291)
Q Consensus 74 ~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 151 (291)
+.|++|-+..|. +.......|..++.|+.|++++|.-.+.+|..+ +.+.+|++|+++++.+. .+|.++. ++..|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~LP~~l~-~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HLPSGLG-NLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-ccchHHH-HHHhhh
Confidence 345555554443 222222234445555555555544433555544 45555555555555554 4554443 445555
Q ss_pred EEEcccccccccCccccccCCCCcEEEccc
Q 035904 152 SLALSANNFHGQIPSTLSNCKQLQMLSLSI 181 (291)
Q Consensus 152 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 181 (291)
+|++..+.-....+.....+.+|++|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 555544433222233334455555555443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=4.5e-08 Score=78.15 Aligned_cols=214 Identities=18% Similarity=0.195 Sum_probs=148.4
Q ss_pred ccCCCCCCEEeCCCCccccccCc----cccCCCCccEEEeecccCc---CCCchh------hhhcCCCccEEEccCCccc
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPS----SIFSISTLKILILGDNQLS---GSFPSF------IISNMSSIRAIDCNYNSLS 136 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~---~~~~~~------~~~~l~~L~~L~l~~~~~~ 136 (291)
+..+..+..++|++|.|..+... -+.+-.+|+..+++.-... +.++.. ++-+||+|+.+++++|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 44588899999999998854433 3445567888777754221 122222 2468899999999999887
Q ss_pred cccChh---hhccccCccEEEcccccccccCc-------------cccccCCCCcEEEcccCcCcCc----cCccCCCCC
Q 035904 137 GELPAN---IFSYLPFLKSLALSANNFHGQIP-------------STLSNCKQLQMLSLSINDFTGA----IPKEIGNLT 196 (291)
Q Consensus 137 ~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~ 196 (291)
...++. +.+....|.+|.+++|.+-.+.- .....-|.|+++..+.|.+..- ....+....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 665553 44566789999999998652211 1123457899999999987521 122344446
Q ss_pred CccEEEcCCCcccCCc-----cccccCCCCCceEEccCccccCC----CCccccCCCCCCEEEccCCcccccCchHHHhh
Q 035904 197 KLTELYLGYNKLQGEI-----PQDLGNLAELEWLSLPQSFLTGT----IPSSIFNLTSLLELDFSNNSLTGSFRDDLCQR 267 (291)
Q Consensus 197 ~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~ 267 (291)
+|+.+.+..|.|.... -..+..+.+|+.|++.+|.++.. ....+..++.|++|.+.+|.++......++..
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 8999999999886331 11234678999999999988743 33455678889999999998886665555443
Q ss_pred -----CccccEEEeecceeee
Q 035904 268 -----IPLLQRFYMTNNHFTG 283 (291)
Q Consensus 268 -----~~~L~~L~l~~n~l~~ 283 (291)
.|+|..|...||.+.+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhcCCCccccccchhhhcC
Confidence 5788999999987654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=1.5e-08 Score=90.96 Aligned_cols=196 Identities=24% Similarity=0.288 Sum_probs=109.2
Q ss_pred ceEEEEecCccccccC-cccccCCCCCCEEeCCCCccccccCccccCC-CCccEEEeecccCcCCCchhh-------hh-
Q 035904 51 RVTALNISYFGLTGTI-SSQVGNLSSLQTLDLSHNQFSGTIPSSIFSI-STLKILILGDNQLSGSFPSFI-------IS- 120 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~-------~~- 120 (291)
+.+.+.+-...-.+-. |-.+-.++.|++|.+.++++.. ... +..+ ..|++|...+. +. .+...+ ..
T Consensus 85 kt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~G-L~~lr~qLe~LIC~~S-l~-Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 85 KTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKG-LQELRHQLEKLICHNS-LD-ALRHVFASCGGDISNS 160 (1096)
T ss_pred hheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhh-hHHHHHhhhhhhhhcc-HH-HHHHHHHHhccccccc
Confidence 4455555444322211 4456678899999999988872 111 1111 23455544321 11 111100 00
Q ss_pred -cCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCcc
Q 035904 121 -NMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLT 199 (291)
Q Consensus 121 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 199 (291)
....|...++++|.+. .....+ .-++.++.|+|++|++... ..+..++.|++||+++|.+. .+|..-..-..|+
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQ 235 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhhe
Confidence 1123566667777664 333333 3567777788888777632 36777777888888887776 3333222222377
Q ss_pred EEEcCCCcccCCccccccCCCCCceEEccCccccCCCC-ccccCCCCCCEEEccCCccc
Q 035904 200 ELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP-SSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 200 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~i~ 257 (291)
.|.+.+|.++. ...+.++++|..||++.|-+.+.-- .-+..+..|+.|+|.+|++-
T Consensus 236 ~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77777777762 2345667777777877776653211 12234556777777777775
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.23 E-value=3e-06 Score=65.00 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccCh-hhhccccCccE
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPA-NIFSYLPFLKS 152 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~ 152 (291)
.+...+||++|++. . -..|.++++|++|.+.+|.|+ .+.+.+...+++|+.|.+.+|.+. .+.. .=...+|+|++
T Consensus 42 d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchh-h-cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 34566667666665 1 223556667777777777776 555555455666777777766654 2211 11235666666
Q ss_pred EEccccccccc---CccccccCCCCcEEEcccC
Q 035904 153 LALSANNFHGQ---IPSTLSNCKQLQMLSLSIN 182 (291)
Q Consensus 153 L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~ 182 (291)
|.+-+|.+.+. -...+..+++|+.||+..-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66666665421 1123456666666666543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=9.9e-08 Score=68.50 Aligned_cols=60 Identities=25% Similarity=0.467 Sum_probs=25.5
Q ss_pred CccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEccccccc
Q 035904 99 TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFH 161 (291)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (291)
.|+..++++|.+. .+|..+..+.+.++.|++.+|.+. .+|.. +..++.|+.|+++.|.+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccc
Confidence 3444444444443 444444333444444444444444 44443 224444444444444433
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.21 E-value=4.7e-07 Score=83.87 Aligned_cols=212 Identities=18% Similarity=0.200 Sum_probs=116.0
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhh--hcCCCccEE
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFII--SNMSSIRAI 128 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L 128 (291)
.++.+++.+..........+.+.. |+++.+.+........... ....+. .+-..++ ..-.+|++|
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~-----------~~idi~-~lL~~~Ln~~sr~nL~~L 127 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDD-----------ATIDII-SLLKDLLNEESRQNLQHL 127 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhh-----------hhccHH-HHHHHHHhHHHHHhhhhc
Confidence 566666666665544444444444 7777776643331111100 000111 0111110 122456777
Q ss_pred EccCCccc-cccChhhhccccCccEEEcccccccc-cCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCC
Q 035904 129 DCNYNSLS-GELPANIFSYLPFLKSLALSANNFHG-QIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206 (291)
Q Consensus 129 ~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 206 (291)
++++.... ..-+..+...+|+|+.|.+.+-.+.. .+......+++|..||+++++++.. ..++.+.+|+.|.+.+=
T Consensus 128 dI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 128 DISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNL 205 (699)
T ss_pred CccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCC
Confidence 77664322 12223445566777777776655431 2233445667777777777777633 44666777777766665
Q ss_pred cccC-CccccccCCCCCceEEccCccccCCC--C----ccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEee
Q 035904 207 KLQG-EIPQDLGNLAELEWLSLPQSFLTGTI--P----SSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMT 277 (291)
Q Consensus 207 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~----~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~ 277 (291)
.+.. ..-..+..+++|+.||++........ . +.-..+|.|+.||.|+..+.+.+...+...-|+|+.+.+-
T Consensus 206 e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 206 EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 5442 22234566778888888775443211 1 1112478899999998888877777766656777766544
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=1.3e-07 Score=79.84 Aligned_cols=86 Identities=10% Similarity=0.143 Sum_probs=56.6
Q ss_pred CCceEEEEecCcccccc--CcccccCCCCCCEEeCCCC-ccccccCccc-cCCCCccEEEeeccc-CcCCCchhhhhcCC
Q 035904 49 THRVTALNISYFGLTGT--ISSQVGNLSSLQTLDLSHN-QFSGTIPSSI-FSISTLKILILGDNQ-LSGSFPSFIISNMS 123 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~ 123 (291)
..++++|.+.++.-.+. +-..-..+|++++|.+.++ +++.....++ ..+++|+++++..|. ++...-..+...++
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 35788999988843321 2233467899999988887 4443333333 357888888888864 44333333446788
Q ss_pred CccEEEccCCc
Q 035904 124 SIRAIDCNYNS 134 (291)
Q Consensus 124 ~L~~L~l~~~~ 134 (291)
+|++|+++.+.
T Consensus 217 kL~~lNlSwc~ 227 (483)
T KOG4341|consen 217 KLKYLNLSWCP 227 (483)
T ss_pred hHHHhhhccCc
Confidence 88888888764
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.9e-06 Score=48.56 Aligned_cols=36 Identities=36% Similarity=0.632 Sum_probs=19.1
Q ss_pred CCCEEeCCCCccccccCccccCCCCccEEEeecccCc
Q 035904 75 SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLS 111 (291)
Q Consensus 75 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 111 (291)
+|++|++++|+++ .++..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555556555555 34444555556666666555554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=7e-06 Score=63.01 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=85.7
Q ss_pred CEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcc
Q 035904 77 QTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALS 156 (291)
Q Consensus 77 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 156 (291)
+.+++.+.++. .+...-.-......+++++|.+. .++. |..+++|.+|.+.+|+++ .+.+.+...+|+|..|.+.
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchh-hccc--CCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 45556555554 22221112346677888888875 3332 367888999999999998 8888877778889999999
Q ss_pred cccccccC-ccccccCCCCcEEEcccCcCcCcc---CccCCCCCCccEEEcCCCc
Q 035904 157 ANNFHGQI-PSTLSNCKQLQMLSLSINDFTGAI---PKEIGNLTKLTELYLGYNK 207 (291)
Q Consensus 157 ~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 207 (291)
+|.+.... -..+..+++|++|.+-+|.+...- ...+..+|+|+.||+..-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88876321 234667888899988888876432 1235567888888887654
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.4e-06 Score=80.87 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=61.4
Q ss_pred CCCCEEeCCCCccc-cccCcccc-CCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCcc
Q 035904 74 SSLQTLDLSHNQFS-GTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLK 151 (291)
Q Consensus 74 ~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 151 (291)
.+|++|++++...- ...+..++ .+|.|+.|.+.+-.+...--......+++|..||++++.++ .+ .+ .+.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HH-HhccccHH
Confidence 45666666664222 22233333 35666666666544431111122345666666666666654 32 11 23555666
Q ss_pred EEEcccccccc-cCccccccCCCCcEEEcccCcCcCc------cCccCCCCCCccEEEcCCCccc
Q 035904 152 SLALSANNFHG-QIPSTLSNCKQLQMLSLSINDFTGA------IPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 152 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
+|.+.+-.+.. ..-..+..+++|+.||++....... .-+.-..+|+|+.||.++..+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 65554433321 1112344556666666655443211 0111223455555555555544
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.04 E-value=1.7e-05 Score=57.88 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=32.2
Q ss_pred cccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhcccc
Q 035904 69 QVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLP 148 (291)
Q Consensus 69 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 148 (291)
+|..+++|+.+.+.. .+.......|.++.+|+.+.+.++ +. .++..++..+++++.+.+.. .+. .++...|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 345555555555543 333233344555555555555543 33 44444445554555555543 222 33344444445
Q ss_pred CccEEEcc
Q 035904 149 FLKSLALS 156 (291)
Q Consensus 149 ~L~~L~l~ 156 (291)
+|+.+.+.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 55555543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.03 E-value=1.8e-05 Score=57.75 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=3.1
Q ss_pred CCCccEEEc
Q 035904 195 LTKLTELYL 203 (291)
Q Consensus 195 ~~~L~~L~l 203 (291)
+++++.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 333333333
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=6.4e-07 Score=64.42 Aligned_cols=84 Identities=26% Similarity=0.365 Sum_probs=40.5
Q ss_pred CCCCCCEEeCCCCccccccCcccc-CCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCc
Q 035904 72 NLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFL 150 (291)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 150 (291)
+...|+..+|++|.+. ..|+.|. ..+.++.|++.+|.+. .+|.. +..++.|+.|+++.|.+. ..+.-++ .+.++
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~-~L~~l 125 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLN-AEPRVIA-PLIKL 125 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccc-cchHHHH-HHHhH
Confidence 3444455555555554 2333332 2345555555555554 44444 255555555555555554 3333333 34555
Q ss_pred cEEEcccccc
Q 035904 151 KSLALSANNF 160 (291)
Q Consensus 151 ~~L~l~~~~~ 160 (291)
..|+...|..
T Consensus 126 ~~Lds~~na~ 135 (177)
T KOG4579|consen 126 DMLDSPENAR 135 (177)
T ss_pred HHhcCCCCcc
Confidence 5555544443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=5.2e-05 Score=65.49 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=24.8
Q ss_pred ceEEEEecCccccccCcccccCCC-CCCEEeCCCCccccccCccccCCCCccEEEeecc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLS-SLQTLDLSHNQFSGTIPSSIFSISTLKILILGDN 108 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 108 (291)
.++.|++++|.++ .+| .+| +|++|.+++|.-...+|..+ .++|+.|++.+|
T Consensus 53 ~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4556666666544 223 122 46666665543222344332 235666666655
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=6.4e-06 Score=47.66 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=16.7
Q ss_pred CCceEEccCccccCCCCccccCCCCCCEEEccCCccc
Q 035904 221 ELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
+|++|++++|+++ .++..+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 23333445555555555555544
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.74 E-value=4.8e-06 Score=74.86 Aligned_cols=64 Identities=23% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCCCccEEEeeccc-CcCCCchhhhhcCCCccEEEccCCc-cccccChhhhccccCccEEEccccc
Q 035904 96 SISTLKILILGDNQ-LSGSFPSFIISNMSSIRAIDCNYNS-LSGELPANIFSYLPFLKSLALSANN 159 (291)
Q Consensus 96 ~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (291)
.+.+|+.++++.+. +++..-..+...+++|++|.+.++. +++.....+...+++|++|+++.|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555555 3322222222335555555555554 3434444444455556666555544
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00048 Score=59.65 Aligned_cols=136 Identities=17% Similarity=0.210 Sum_probs=82.9
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCC-ccccccChhhhcccc
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN-SLSGELPANIFSYLP 148 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~ 148 (291)
+..+++++.|++++|.++ .+|. -.++|+.|.+++|.-...+|..+ ..+|++|.+++| .+. .+| +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP-------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP-------E 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc-------c
Confidence 556799999999999887 5562 23469999999876544666543 358999999988 443 333 3
Q ss_pred CccEEEcccccccccCccccccC-CCCcEEEcccCcCc--CccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceE
Q 035904 149 FLKSLALSANNFHGQIPSTLSNC-KQLQMLSLSINDFT--GAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWL 225 (291)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 225 (291)
.|+.|.+..+.... +..+ ++|+.|.+.++... ...+..+ .++|+.|.+.+|... ..|..+. .+|+.|
T Consensus 113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ccceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 57777776554321 1222 24566666432211 0111111 257888888887754 3343322 567888
Q ss_pred EccCc
Q 035904 226 SLPQS 230 (291)
Q Consensus 226 ~l~~~ 230 (291)
.++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 87665
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=2.5e-06 Score=68.66 Aligned_cols=102 Identities=26% Similarity=0.268 Sum_probs=79.9
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
...++.|+.-+|.++++.. ..+|+.|++|.|+-|+|+ .-..+..|.+|+.|+|..|.|.+--.-..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4467888888998876433 568999999999999998 345578999999999999999833344457899999999
Q ss_pred EccCCccccccCh----hhhccccCccEEE
Q 035904 129 DCNYNSLSGELPA----NIFSYLPFLKSLA 154 (291)
Q Consensus 129 ~l~~~~~~~~~~~----~~~~~~~~L~~L~ 154 (291)
-+..|...|..+. .+...+|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999887765554 3455678888876
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=3.6e-06 Score=67.72 Aligned_cols=100 Identities=23% Similarity=0.190 Sum_probs=59.4
Q ss_pred CCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccC-ccccccCCCCc
Q 035904 97 ISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQI-PSTLSNCKQLQ 175 (291)
Q Consensus 97 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~ 175 (291)
+.+.+.|++-+|.+. ...+..+|+.|+.|.++-|+++ .+.. +..|.+|++|+|..|.+.++. -.-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 445666777777665 2233466777777777777776 4444 446777777777777766321 12345677777
Q ss_pred EEEcccCcCcCccCc-----cCCCCCCccEEE
Q 035904 176 MLSLSINDFTGAIPK-----EIGNLTKLTELY 202 (291)
Q Consensus 176 ~L~l~~~~~~~~~~~-----~~~~~~~L~~L~ 202 (291)
.|++..|.-.+..+. .+..+|+|++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777665433221 233456666653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=4.1e-05 Score=61.17 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=39.5
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecc--cCcCCCchhhhhcCCCccEEEccCCccccccChhh--hc
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDN--QLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANI--FS 145 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~ 145 (291)
...+..|+.+++.+..++ ....+-.+++|+.|.++.| ++.+.++.-+ ..+++|+++++++|++.. ...+ ..
T Consensus 39 ~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~--lstl~pl~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKD--LSTLRPLK 113 (260)
T ss_pred cccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccc--ccccchhh
Confidence 334444555554444443 1122334555666666665 4433333333 444666666666665531 1110 12
Q ss_pred cccCccEEEccccccc
Q 035904 146 YLPFLKSLALSANNFH 161 (291)
Q Consensus 146 ~~~~L~~L~l~~~~~~ 161 (291)
.+++|..|++..|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 3444555555555433
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.34 E-value=2.2e-05 Score=66.67 Aligned_cols=227 Identities=20% Similarity=0.106 Sum_probs=105.2
Q ss_pred CceEEEEecCc-cccccCcc-cccCCCCCCEEeCCCCc-cccc-cCccccCCCCccEEEeecccCcCCCchhhh----hc
Q 035904 50 HRVTALNISYF-GLTGTISS-QVGNLSSLQTLDLSHNQ-FSGT-IPSSIFSISTLKILILGDNQLSGSFPSFII----SN 121 (291)
Q Consensus 50 ~~l~~L~l~~~-~~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~ 121 (291)
.++++|++..| .+++..-. .-..|++|++|++++|. +.+. +...+.++..++.+...+|.-. +...+ ..
T Consensus 190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---~le~l~~~~~~ 266 (483)
T KOG4341|consen 190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---ELEALLKAAAY 266 (483)
T ss_pred chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---cHHHHHHHhcc
Confidence 47899999995 56654433 34578999999999884 4432 2334456666777766666321 11111 22
Q ss_pred CCCccEEEccCCc-cccccChhhhccccCccEEEcccccc-cccCc-cccccCCCCcEEEcccCcC-cCcc-CccCCCCC
Q 035904 122 MSSIRAIDCNYNS-LSGELPANIFSYLPFLKSLALSANNF-HGQIP-STLSNCKQLQMLSLSINDF-TGAI-PKEIGNLT 196 (291)
Q Consensus 122 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~-~~l~~~~~L~~L~l~~~~~-~~~~-~~~~~~~~ 196 (291)
+..+..+++..|. +++.-...+...+.+|+.+..+++.- ++... ....+..+|+.|.+..+.- ++.. ...-.+++
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 3334444444432 22111112223344555555544321 11111 1123445566665555542 1111 11122445
Q ss_pred CccEEEcCCCccc--CCccccccCCCCCceEEccCcccc-CCC----CccccCCCCCCEEEccCCcccccCchHHHhhCc
Q 035904 197 KLTELYLGYNKLQ--GEIPQDLGNLAELEWLSLPQSFLT-GTI----PSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIP 269 (291)
Q Consensus 197 ~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~-~~~----~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 269 (291)
.|+.+++.++... +.+...-.+++.|+.+.++.|... +.. ...-.....++.+.+++++............++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 5666665555432 112222234555666666555332 111 111123345555556665443222222333355
Q ss_pred cccEEEeecc
Q 035904 270 LLQRFYMTNN 279 (291)
Q Consensus 270 ~L~~L~l~~n 279 (291)
+|+.+++-++
T Consensus 427 ~Leri~l~~~ 436 (483)
T KOG4341|consen 427 NLERIELIDC 436 (483)
T ss_pred ccceeeeech
Confidence 6666555554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.30 E-value=2.7e-05 Score=70.06 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCCCCCEEeCCCCc-cccc-cCccccCCCCccEEEeecc-cCcCCCc---hhhhhcCCCccEEEccCCc-cccccChhhh
Q 035904 72 NLSSLQTLDLSHNQ-FSGT-IPSSIFSISTLKILILGDN-QLSGSFP---SFIISNMSSIRAIDCNYNS-LSGELPANIF 144 (291)
Q Consensus 72 ~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~ 144 (291)
.++.|+.+.+..+. +... .......++.|+.|+++++ ......+ ......+.+|+.|+++.+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46888888887763 3321 3345567888888888873 2211111 2233566788888888877 5545555555
Q ss_pred ccccCccEEEccccc-cccc-CccccccCCCCcEEEcccCcC
Q 035904 145 SYLPFLKSLALSANN-FHGQ-IPSTLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 145 ~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~~~~ 184 (291)
..+++|++|.+..|. ++.. +......++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 557888888877666 4432 223345677788888887765
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00029 Score=56.44 Aligned_cols=106 Identities=24% Similarity=0.359 Sum_probs=72.1
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCC--ccccccCccccCCCCccEEEeecccCcC--CCchhhhhcCCC
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHN--QFSGTIPSSIFSISTLKILILGDNQLSG--SFPSFIISNMSS 124 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~ 124 (291)
...+..+++.++.++.. ..+-.+++|+.|.++.| .+.+.+......+|+|+++++++|++.. .+++ +..+.+
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN 117 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence 44566666777666532 22557899999999999 5555555556677999999999998852 2222 367888
Q ss_pred ccEEEccCCcccc--ccChhhhccccCccEEEcccc
Q 035904 125 IRAIDCNYNSLSG--ELPANIFSYLPFLKSLALSAN 158 (291)
Q Consensus 125 L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 158 (291)
|..|++.+|..+. .--..+|..+++|++|+-...
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8899998887762 112245556777777765443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.84 E-value=0.00073 Score=32.55 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.7
Q ss_pred cccEEEeecceeeeeCCCCCC
Q 035904 270 LLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 270 ~L~~L~l~~n~l~~~ip~~~~ 290 (291)
+|+.|++++|+++ .||+.|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 5788999999998 8998864
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.82 E-value=0.0042 Score=27.73 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=8.3
Q ss_pred ccccEEEeecceeeeeCC
Q 035904 269 PLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 269 ~~L~~L~l~~n~l~~~ip 286 (291)
++|+.|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 35667777777766 554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.23 E-value=0.0082 Score=28.80 Aligned_cols=10 Identities=50% Similarity=0.660 Sum_probs=3.7
Q ss_pred CEEeCCCCcc
Q 035904 77 QTLDLSHNQF 86 (291)
Q Consensus 77 ~~L~l~~~~~ 86 (291)
++|++++|++
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3333333333
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.10 E-value=0.011 Score=29.55 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=12.9
Q ss_pred ccccEEEeecceeeeeCCCCCC
Q 035904 269 PLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 269 ~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
++|+.|++++|+++ .||+..|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665544
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.10 E-value=0.011 Score=29.55 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=12.9
Q ss_pred ccccEEEeecceeeeeCCCCCC
Q 035904 269 PLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 269 ~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
++|+.|++++|+++ .||+..|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665544
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.0069 Score=46.92 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=32.8
Q ss_pred CcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCC-cccccc-CCCCCceEEccCc-cccCCCCccccCCCCCCEEE
Q 035904 174 LQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGE-IPQDLG-NLAELEWLSLPQS-FLTGTIPSSIFNLTSLLELD 250 (291)
Q Consensus 174 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~ 250 (291)
++.++-+++.+..+.-+.+..++.++.|.+.+|.--+. ..+-++ ..++|+.|++++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44444444444433333344444555555544432111 001111 2244555555554 34433333344444555444
Q ss_pred ccC
Q 035904 251 FSN 253 (291)
Q Consensus 251 l~~ 253 (291)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.17 E-value=0.00018 Score=64.23 Aligned_cols=182 Identities=25% Similarity=0.278 Sum_probs=84.2
Q ss_pred CCEEeCCCCcccc----ccCccccCCCCccEEEeecccCcCCCchhhhhcC----CCccEEEccCCccccccCh----hh
Q 035904 76 LQTLDLSHNQFSG----TIPSSIFSISTLKILILGDNQLSGSFPSFIISNM----SSIRAIDCNYNSLSGELPA----NI 143 (291)
Q Consensus 76 L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~----~~ 143 (291)
+..+.|.+|.+.. .+...+...+.|+.|++++|.+.+.--..+...+ ..+++|++..|.++..... .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666666552 2233444566666677776666521111111111 2345556665655533222 22
Q ss_pred hccccCccEEEcccccccc----cCccccc----cCCCCcEEEcccCcCcCc----cCccCCCCCC-ccEEEcCCCcccC
Q 035904 144 FSYLPFLKSLALSANNFHG----QIPSTLS----NCKQLQMLSLSINDFTGA----IPKEIGNLTK-LTELYLGYNKLQG 210 (291)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~ 210 (291)
. ....++++++..|.+.. ..+..+. ...++++|.+.++.++.. ....+...+. +..+++..|.+.+
T Consensus 169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 2 24455666666555431 1112222 244556666666555421 1112222333 4445666665543
Q ss_pred C----ccccccCC-CCCceEEccCccccCCC----CccccCCCCCCEEEccCCcccc
Q 035904 211 E----IPQDLGNL-AELEWLSLPQSFLTGTI----PSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 211 ~----~~~~~~~~-~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
. ....+..+ ..++.+++..|.+++.. ...+..+++++++.++.|++.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 11222233 44566666666665432 2333455566666666666554
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.07 E-value=0.00067 Score=60.59 Aligned_cols=183 Identities=23% Similarity=0.266 Sum_probs=121.2
Q ss_pred ccEEEeecccCcCCCchh---hhhcCCCccEEEccCCccccccChhhhccc----cCccEEEccccccccc----Ccccc
Q 035904 100 LKILILGDNQLSGSFPSF---IISNMSSIRAIDCNYNSLSGELPANIFSYL----PFLKSLALSANNFHGQ----IPSTL 168 (291)
Q Consensus 100 L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~----~~~~l 168 (291)
+..+.+.+|.+....... .+...+.|+.|++++|.+.+.....+...+ ..+++|.+..|.++.. ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 778888888886443322 245678899999999998754443333222 3467777777776632 34455
Q ss_pred ccCCCCcEEEcccCcCcC----ccCccC----CCCCCccEEEcCCCcccCCc----cccccCCCC-CceEEccCccccCC
Q 035904 169 SNCKQLQMLSLSINDFTG----AIPKEI----GNLTKLTELYLGYNKLQGEI----PQDLGNLAE-LEWLSLPQSFLTGT 235 (291)
Q Consensus 169 ~~~~~L~~L~l~~~~~~~----~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~ 235 (291)
.....++.++++.|.+.. ..+..+ ....++++|.+.+|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667788899999888742 122333 34678999999999887321 223334444 66699999888754
Q ss_pred CC----ccccCC-CCCCEEEccCCcccccCchHHHh---hCccccEEEeecceee
Q 035904 236 IP----SSIFNL-TSLLELDFSNNSLTGSFRDDLCQ---RIPLLQRFYMTNNHFT 282 (291)
Q Consensus 236 ~~----~~l~~~-~~L~~L~l~~n~i~~~~~~~~~~---~~~~L~~L~l~~n~l~ 282 (291)
.. ..+... +.++.++++.|.+.+.....+.. .++.++.+.++.|++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22 233344 67799999999998765554443 3568899999988875
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.039 Score=42.88 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=40.8
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccc-cccCcccc-CCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFS-GTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.++.++=+++.+..+--+.+..++.++.|.+.+|+-- .-.-..++ -.++|+.|++++|.-...---..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4666666666666555556666666666666665332 11111111 245666666666642212222223455555555
Q ss_pred Ecc
Q 035904 129 DCN 131 (291)
Q Consensus 129 ~l~ 131 (291)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.40 E-value=0.19 Score=24.91 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=10.0
Q ss_pred CCccEEEccCCccccccChhhh
Q 035904 123 SSIRAIDCNYNSLSGELPANIF 144 (291)
Q Consensus 123 ~~L~~L~l~~~~~~~~~~~~~~ 144 (291)
++|++|++++|++. .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34455555555554 4444433
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.40 E-value=0.19 Score=24.91 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=10.0
Q ss_pred CCccEEEccCCccccccChhhh
Q 035904 123 SSIRAIDCNYNSLSGELPANIF 144 (291)
Q Consensus 123 ~~L~~L~l~~~~~~~~~~~~~~ 144 (291)
++|++|++++|++. .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34455555555554 4444433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.40 E-value=0.094 Score=25.53 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=8.0
Q ss_pred CCCCEEEccCCccccc
Q 035904 244 TSLLELDFSNNSLTGS 259 (291)
Q Consensus 244 ~~L~~L~l~~n~i~~~ 259 (291)
++|++|++++|.|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4566666666665543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.52 E-value=0.2 Score=24.99 Aligned_cols=18 Identities=39% Similarity=0.766 Sum_probs=14.1
Q ss_pred ccccEEEeecceeeeeCCC
Q 035904 269 PLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 269 ~~L~~L~l~~n~l~~~ip~ 287 (291)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888887 7876
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.37 E-value=0.0082 Score=47.64 Aligned_cols=84 Identities=21% Similarity=0.174 Sum_probs=66.1
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+++.||++.+.+. .+...++.++.|..|+++-|.+. ..|..+.....+..++.++|... ..|... +..++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~-~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ-KKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc-cccCCcchh
Confidence 568999999988765 34445777888888899888777 67888888888888888888876 667665 788888888
Q ss_pred EccCCccc
Q 035904 129 DCNYNSLS 136 (291)
Q Consensus 129 ~l~~~~~~ 136 (291)
+..++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888765
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.12 E-value=0.63 Score=23.64 Aligned_cols=21 Identities=48% Similarity=0.463 Sum_probs=12.2
Q ss_pred CCCCEEEccCCcccccCchHH
Q 035904 244 TSLLELDFSNNSLTGSFRDDL 264 (291)
Q Consensus 244 ~~L~~L~l~~n~i~~~~~~~~ 264 (291)
++|++|+|++|.+.......+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456777777777664433333
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.60 E-value=1.4 Score=39.84 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=40.7
Q ss_pred CCCccEEEcCCCcccCC--ccccccCCCCCceEEccCc--cccCCCCcccc--CCCCCCEEEccCCcccccCch------
Q 035904 195 LTKLTELYLGYNKLQGE--IPQDLGNLAELEWLSLPQS--FLTGTIPSSIF--NLTSLLELDFSNNSLTGSFRD------ 262 (291)
Q Consensus 195 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~--~~~~L~~L~l~~n~i~~~~~~------ 262 (291)
.+.+..+.+++|++... +.+.....++|..|+|++| .+.. ...+. ....|++|.+.+|++......
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 45566666777766421 2222234567777777777 2221 11111 223567777777777653321
Q ss_pred HHHhhCccccEEE
Q 035904 263 DLCQRIPLLQRFY 275 (291)
Q Consensus 263 ~~~~~~~~L~~L~ 275 (291)
.+...+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 1222466666553
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.17 E-value=0.039 Score=43.94 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred cccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceE
Q 035904 146 YLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWL 225 (291)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 225 (291)
.....+.|+++.|++- -+-..++.+..+..|+++.|.+. ..|..+.+...++.++...|..+ ..|..+...++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3444555555555443 12233444455555555555554 34444555555555555555544 445555555555555
Q ss_pred EccCcccc
Q 035904 226 SLPQSFLT 233 (291)
Q Consensus 226 ~l~~~~~~ 233 (291)
+.-++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 55555543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.41 E-value=2.7 Score=21.00 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=8.0
Q ss_pred CCCCEEeCCCCccc
Q 035904 74 SSLQTLDLSHNQFS 87 (291)
Q Consensus 74 ~~L~~L~l~~~~~~ 87 (291)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.09 E-value=4.4 Score=36.70 Aligned_cols=12 Identities=42% Similarity=0.421 Sum_probs=6.5
Q ss_pred CCCccEEEeecc
Q 035904 97 ISTLKILILGDN 108 (291)
Q Consensus 97 l~~L~~L~l~~~ 108 (291)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 455555555555
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.56 E-value=5.3 Score=19.60 Aligned_cols=11 Identities=45% Similarity=0.558 Sum_probs=5.8
Q ss_pred CCCCEEeCCCC
Q 035904 74 SSLQTLDLSHN 84 (291)
Q Consensus 74 ~~L~~L~l~~~ 84 (291)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.50 E-value=9 Score=34.18 Aligned_cols=60 Identities=33% Similarity=0.268 Sum_probs=27.9
Q ss_pred CccEEEcccccccccCccccccC---CCCcEEEcccCcCcC---ccCccCCCCCCccEEEcCCCcc
Q 035904 149 FLKSLALSANNFHGQIPSTLSNC---KQLQMLSLSINDFTG---AIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
.+.+++++.|......+..+..+ ..++.++.+...+.- ..+-..+..+++...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 45666666666554444333222 235555555554431 1122233344555555655543
No 93
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=26.45 E-value=22 Score=14.05 Aligned_cols=7 Identities=14% Similarity=0.695 Sum_probs=4.7
Q ss_pred CCCCCCC
Q 035904 285 IPHNLWQ 291 (291)
Q Consensus 285 ip~~~~~ 291 (291)
-+++||+
T Consensus 3 ~~~CFWK 9 (12)
T PF02083_consen 3 KSECFWK 9 (12)
T ss_pred ccchhhh
Confidence 4677875
No 94
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=21.90 E-value=1.1e+02 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHhcc-CCCC
Q 035904 3 NINTTDQQALLALKARITS-DPSN 25 (291)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~ 25 (291)
+++|.|.+.|.++.+.+.. ||.-
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~DP~f 25 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADDPRF 25 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcCcHH
Confidence 4789999999999999954 5643
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.89 E-value=60 Score=35.98 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=25.3
Q ss_pred eCCCCccccccCccccCCCCccEEEeecccCc
Q 035904 80 DLSHNQFSGTIPSSIFSISTLKILILGDNQLS 111 (291)
Q Consensus 80 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 111 (291)
||++|+|....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888555667778889999999988774
No 96
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=21.36 E-value=1.2e+02 Score=17.39 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHhccC
Q 035904 5 NTTDQQALLALKARITSD 22 (291)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (291)
.++++..|+++|+.++++
T Consensus 27 i~~eV~~LL~LKaqlg~~ 44 (45)
T cd00938 27 IAEEVAKLLELKAQLGGD 44 (45)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 367889999999999665
Done!